Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 27 of 222
Found at i:8085299 original size:10 final size:9
Alignment explanation
Indices: 8085254--8085298 Score: 51
Period size: 9 Copynumber: 5.2 Consensus size: 9
8085244 AGAAAAAAAA
8085254 TTAAAA-TT
1 TTAAAATTT
8085262 TT-AAATTCT
1 TTAAAATT-T
*
8085271 TT-ACATTT
1 TTAAAATTT
8085279 TTAAAATTT
1 TTAAAATTT
8085288 TTAAAATTT
1 TTAAAATTT
8085297 TT
1 TT
8085299 TTAATTTTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
7 3 0.09
8 6 0.19
9 23 0.72
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (9 bp):
TTAAAATTT
Found at i:8086859 original size:15 final size:14
Alignment explanation
Indices: 8086839--8086889 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
8086829 CCATATTTTT
8086839 AATATTTAAATATTC
1 AATATTTAAAT-TTC
*
8086854 AATATTATAATTTTC
1 AATATT-TAAATTTC
*
8086869 TAAAATTTAAATTT-
1 -AATATTTAAATTTC
8086883 AATATTT
1 AATATTT
8086890 TTATTTTAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
13 6 0.20
15 15 0.50
16 9 0.30
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (14 bp):
AATATTTAAATTTC
Found at i:8087282 original size:85 final size:85
Alignment explanation
Indices: 8087139--8087311 Score: 328
Period size: 85 Copynumber: 2.0 Consensus size: 85
8087129 AAGATAAAAA
8087139 CATACTTATAATAATATTTGTTGTTTTTTAACTGATTTCTAATTATCGTTCATCTTAGTTAAGAT
1 CATACTTATAATAATATTTGTTGTTTTTTAACTGATTTCTAATTATCGTTCATCTTAGTTAAGAT
8087204 TTTAAAATAACATATTTATG
66 TTTAAAATAACATATTTATG
* *
8087224 CATACTTATAATAATATTTGTTGTTTTTTAACTGATTTTTAATTATCGTTTATCTTAGTTAAGAT
1 CATACTTATAATAATATTTGTTGTTTTTTAACTGATTTCTAATTATCGTTCATCTTAGTTAAGAT
8087289 TTTAAAATAACATATTTATG
66 TTTAAAATAACATATTTATG
8087309 CAT
1 CAT
8087312 TATCGATTTT
Statistics
Matches: 86, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 86 1.00
ACGTcount: A:0.33, C:0.09, G:0.08, T:0.50
Consensus pattern (85 bp):
CATACTTATAATAATATTTGTTGTTTTTTAACTGATTTCTAATTATCGTTCATCTTAGTTAAGAT
TTTAAAATAACATATTTATG
Found at i:8088858 original size:56 final size:56
Alignment explanation
Indices: 8088743--8088858 Score: 142
Period size: 56 Copynumber: 2.1 Consensus size: 56
8088733 GTTTTTTTTC
* * * * *
8088743 TTTTTTGGTCACATAACCATGAAAAGTTATAAAATGGTCACTCAATTATTAGTATT
1 TTTTTTGGTCACACAACCATGAAAAGTTACAAAATGGTCACCCAACTATTAGGATT
* * * *
8088799 TTTTTTTGTCACCCAACTATGAAAAGTTACAAAATGGTCACCCAACTATCTTGGATT
1 TTTTTTGGTCACACAACCATGAAAAGTTACAAAATGGTCACCCAACTAT-TAGGATT
8088856 TTT
1 TTT
8088859 GGGTGTTCCG
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
56 42 0.84
57 8 0.16
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (56 bp):
TTTTTTGGTCACACAACCATGAAAAGTTACAAAATGGTCACCCAACTATTAGGATT
Found at i:8089076 original size:23 final size:24
Alignment explanation
Indices: 8089050--8089094 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
8089040 TAATAATTAT
8089050 ATATTTTAGAA-TTTTATAAAAAA
1 ATATTTTAGAACTTTTATAAAAAA
* *
8089073 ATATTTTTGAACTTTTTTAAAA
1 ATATTTTAGAACTTTTATAAAA
8089095 TATATTATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.49
Consensus pattern (24 bp):
ATATTTTAGAACTTTTATAAAAAA
Found at i:8089099 original size:23 final size:23
Alignment explanation
Indices: 8089048--8089100 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
8089038 ATTAATAATT
8089048 ATATATTTTAGAATTTTATAAAA
1 ATATATTTTAGAATTTTATAAAA
* * *
8089071 AAATATTTTTGAACTTTT-TTAAA
1 ATATATTTTAGAA-TTTTATAAAA
8089094 ATATATT
1 ATATATT
8089101 ATATGATTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
23 21 0.84
24 4 0.16
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (23 bp):
ATATATTTTAGAATTTTATAAAA
Found at i:8089998 original size:25 final size:25
Alignment explanation
Indices: 8089962--8090052 Score: 130
Period size: 25 Copynumber: 3.6 Consensus size: 25
8089952 TTATTATGCA
*
8089962 CTAATGAA-CAGAGAGCACTGACATG
1 CTAAT-AATCAGAGAGCACTGACGTG
*
8089987 CTAATAATCAGAGAGCACTAACGTG
1 CTAATAATCAGAGAGCACTGACGTG
*
8090012 TTAATAATCAGAGAGCACTGACGTG
1 CTAATAATCAGAGAGCACTGACGTG
*
8090037 CTATTAATCAGAGAGC
1 CTAATAATCAGAGAGC
8090053 GCGCTTAGGT
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
24 2 0.03
25 57 0.97
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.21
Consensus pattern (25 bp):
CTAATAATCAGAGAGCACTGACGTG
Found at i:8090591 original size:13 final size:13
Alignment explanation
Indices: 8090570--8090601 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
8090560 TTTGATTAAT
*
8090570 TAATGTAATATAA
1 TAATATAATATAA
8090583 TAATATAATATAA
1 TAATATAATATAA
8090596 TAATAT
1 TAATAT
8090602 TTTAATCTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (13 bp):
TAATATAATATAA
Found at i:8091080 original size:13 final size:14
Alignment explanation
Indices: 8091037--8091083 Score: 60
Period size: 14 Copynumber: 3.3 Consensus size: 14
8091027 ATATTTAATA
8091037 TTATAATTTTCTATT
1 TTATAATTTT-TATT
8091052 TTATAATTTTTATT
1 TTATAATTTTTATT
*
8091066 TTA-AATTTATTTTT
1 TTATAATTT-TTATT
8091080 TTAT
1 TTAT
8091084 TTTAAATAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
13 5 0.17
14 14 0.48
15 10 0.34
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (14 bp):
TTATAATTTTTATT
Found at i:8093709 original size:11 final size:11
Alignment explanation
Indices: 8093672--8093724 Score: 52
Period size: 11 Copynumber: 4.6 Consensus size: 11
8093662 AATAAACACC
8093672 AAAAATTATTTT
1 AAAAA-TATTTT
***
8093684 AAAAATAAAAAT
1 AAAAAT-ATTTT
*
8093696 AAAAGTATTTT
1 AAAAATATTTT
8093707 AAAAATATTTT
1 AAAAATATTTT
8093718 AAAAATA
1 AAAAATA
8093725 AAAAATAAAA
Statistics
Matches: 32, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
11 20 0.62
12 12 0.38
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:8093735 original size:13 final size:13
Alignment explanation
Indices: 8093717--8093744 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
8093707 AAAAATATTT
8093717 TAAAAATAAAAAA
1 TAAAAATAAAAAA
8093730 TAAAAATAAAAAA
1 TAAAAATAAAAAA
8093743 TA
1 TA
8093745 TATTTATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (13 bp):
TAAAAATAAAAAA
Found at i:8094202 original size:7 final size:7
Alignment explanation
Indices: 8094190--8094219 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
8094180 AAAATTTCAC
8094190 TTACAAG
1 TTACAAG
8094197 TTACAAG
1 TTACAAG
8094204 TTACAAG
1 TTACAAG
8094211 TTACAAG
1 TTACAAG
8094218 TT
1 TT
8094220 GTAGCCTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (7 bp):
TTACAAG
Found at i:8106937 original size:21 final size:21
Alignment explanation
Indices: 8106908--8106984 Score: 68
Period size: 21 Copynumber: 3.7 Consensus size: 21
8106898 GTGCAAAGGA
*
8106908 TATGAGTTTCCGTTTAACCTT
1 TATGGGTTTCCGTTTAACCTT
* *
8106929 TATGGGTTTCC-ATTAAGCTCT
1 TATGGGTTTCCGTTTAACCT-T
* * *
8106950 T-TGGAGCTTCAGTTTAACCCT
1 TATGG-GTTTCCGTTTAACCTT
8106971 TATGGGTTTCCGTT
1 TATGGGTTTCCGTT
8106985 CAGCTCTTAC
Statistics
Matches: 42, Mismatches: 10, Indels: 8
0.70 0.17 0.13
Matches are distributed among these distances:
20 9 0.21
21 25 0.60
22 8 0.19
ACGTcount: A:0.17, C:0.19, G:0.19, T:0.44
Consensus pattern (21 bp):
TATGGGTTTCCGTTTAACCTT
Found at i:8106978 original size:42 final size:42
Alignment explanation
Indices: 8106919--8107022 Score: 136
Period size: 42 Copynumber: 2.5 Consensus size: 42
8106909 ATGAGTTTCC
* **
8106919 GTTTAACCTTTATGGGTTTCCATTAAGCTCTTTGGAGCTTCA
1 GTTTAACCCTTATGGGTTTCCATTAAGCTCTTACGAGCTTCA
* *
8106961 GTTTAACCCTTATGGGTTTCCGTTCAGCTCTTACGAGCTTCA
1 GTTTAACCCTTATGGGTTTCCATTAAGCTCTTACGAGCTTCA
* * *
8107003 GTTCAACCCGTATGAGTTTC
1 GTTTAACCCTTATGGGTTTC
8107023 TGTTTAGAAT
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 54 1.00
ACGTcount: A:0.18, C:0.23, G:0.19, T:0.39
Consensus pattern (42 bp):
GTTTAACCCTTATGGGTTTCCATTAAGCTCTTACGAGCTTCA
Found at i:8113103 original size:67 final size:67
Alignment explanation
Indices: 8112995--8113122 Score: 220
Period size: 67 Copynumber: 1.9 Consensus size: 67
8112985 TTTCCAATTT
* ** *
8112995 AGAGAGCACACTCTCGCGAACCTCATTTCTTACAGTGGGATTACCAGTCCATGCTAAATCCTTTG
1 AGAGAGCACACTCCCGCGAACCTCATTTCTTACAGCAGGATTACCAGTCCAGGCTAAATCCTTTG
8113060 CA
66 CA
8113062 AGAGAGCACACTCCCGCGAACCTCATTTCTTACAGCAGGATTACCAGTCCAGGCTAAATCC
1 AGAGAGCACACTCCCGCGAACCTCATTTCTTACAGCAGGATTACCAGTCCAGGCTAAATCC
8113123 CCTGTAATAT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 57 1.00
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.23
Consensus pattern (67 bp):
AGAGAGCACACTCCCGCGAACCTCATTTCTTACAGCAGGATTACCAGTCCAGGCTAAATCCTTTG
CA
Found at i:8117924 original size:17 final size:18
Alignment explanation
Indices: 8117892--8117934 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
8117882 TCTAAATTAA
*
8117892 TAATTTCATTCAATATAT
1 TAATTTCATACAATATAT
8117910 TAATTT-ATACAATATA-
1 TAATTTCATACAATATAT
*
8117926 AAATTTCAT
1 TAATTTCAT
8117935 TTCATACAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 5 0.23
17 11 0.50
18 6 0.27
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (18 bp):
TAATTTCATACAATATAT
Found at i:8125548 original size:28 final size:28
Alignment explanation
Indices: 8125496--8125549 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
8125486 AATTAATACC
***
8125496 ATTACCATATATACAATTTTTTTTAAAT
1 ATTACCATATATACAATTAAATTTAAAT
8125524 ATTACCATATATACAATTAAATTTAA
1 ATTACCATATATACAATTAAATTTAA
8125550 GAAAATAAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (28 bp):
ATTACCATATATACAATTAAATTTAAAT
Found at i:8131840 original size:103 final size:104
Alignment explanation
Indices: 8131596--8131861 Score: 410
Period size: 103 Copynumber: 2.6 Consensus size: 104
8131586 GTTGTACATA
** *
8131596 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
8131661 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
*
8131700 GAGGGGTTGCTAAGTGCTGATTCCCC-AGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
8131764 TCTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
65 TCTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * * *
8131803 AAGGGGTTGCTAAGTGATGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
8131862 AATAACGGTT
Statistics
Matches: 148, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
103 82 0.55
104 66 0.45
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:8144765 original size:3 final size:3
Alignment explanation
Indices: 8144752--8144784 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
8144742 ATCTAACAAA
8144752 TTG TT- TTG TTG TTG TTG TTG TTG TTG TTG TTG T
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG T
8144785 GAGTGTAGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 27 0.93
ACGTcount: A:0.00, C:0.00, G:0.30, T:0.70
Consensus pattern (3 bp):
TTG
Found at i:8152022 original size:21 final size:20
Alignment explanation
Indices: 8151998--8152063 Score: 51
Period size: 21 Copynumber: 3.1 Consensus size: 20
8151988 TAGAGTTTTT
*
8151998 GTTTAACCCTATTGGGTTTCC
1 GTTTAACACT-TTGGGTTTCC
* * * * *
8152019 GTTTAGCTCTTTTGAGCTTCT
1 GTTTAACAC-TTTGGGTTTCC
8152040 GTTTAACACTTATGGGTTTCC
1 GTTTAACACTT-TGGGTTTCC
8152061 GTT
1 GTT
8152064 CAGCTCTTTT
Statistics
Matches: 33, Mismatches: 10, Indels: 4
0.70 0.21 0.09
Matches are distributed among these distances:
20 2 0.06
21 30 0.91
22 1 0.03
ACGTcount: A:0.14, C:0.20, G:0.20, T:0.47
Consensus pattern (20 bp):
GTTTAACACTTTGGGTTTCC
Found at i:8152056 original size:42 final size:41
Alignment explanation
Indices: 8151997--8152175 Score: 187
Period size: 42 Copynumber: 4.3 Consensus size: 41
8151987 ATAGAGTTTT
*
8151997 TGTTTAACCCTATTGGGTTTCCGTTTAGCTCTTTTGAGCTTC
1 TGTTTAACCTTA-TGGGTTTCCGTTTAGCTCTTTTGAGCTTC
*
8152039 TGTTTAACACTTATGGGTTTCCGTTCAGCTCTTTTGAGCTTC
1 TGTTTAAC-CTTATGGGTTTCCGTTTAGCTCTTTTGAGCTTC
** *
8152081 TAATTAACCCTTATGGGTTTCCGTTTAGCTCTTATGAGCTTC
1 TGTTTAA-CCTTATGGGTTTCCGTTTAGCTCTTTTGAGCTTC
* * * * * * * *
8152123 CGTTCGATCCTTACGGGTTTCTGTTTAGCACTTATGTGCTTC
1 TGTT-TAACCTTATGGGTTTCCGTTTAGCTCTTTTGAGCTTC
* *
8152165 AGTTTAGCCTT
1 TGTTTAACCTT
8152176 CGGGCTTTTG
Statistics
Matches: 116, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
41 5 0.04
42 106 0.91
43 5 0.04
ACGTcount: A:0.15, C:0.22, G:0.19, T:0.45
Consensus pattern (41 bp):
TGTTTAACCTTATGGGTTTCCGTTTAGCTCTTTTGAGCTTC
Found at i:8152116 original size:21 final size:21
Alignment explanation
Indices: 8152010--8152172 Score: 85
Period size: 21 Copynumber: 7.8 Consensus size: 21
8152000 TTAACCCTAT
* *
8152010 TGGGTTTCCGTTTAGCTCTTT
1 TGGGCTTCCGTTTAGCTCTTA
* * * *
8152031 TGAGCTTCTGTTTAACACTTA
1 TGGGCTTCCGTTTAGCTCTTA
* * *
8152052 TGGGTTTCCGTTCAGCTCTTT
1 TGGGCTTCCGTTTAGCTCTTA
* *** * *
8152073 TGAGCTTCTAATTAACCCTTA
1 TGGGCTTCCGTTTAGCTCTTA
*
8152094 TGGGTTTCCGTTTAGCTCTTA
1 TGGGCTTCCGTTTAGCTCTTA
* * *
8152115 TGAGCTTCCG-TTCGATCCTTA
1 TGGGCTTCCGTTTAGCT-CTTA
* * * *
8152136 CGGGTTTCTGTTTAGCACTTA
1 TGGGCTTCCGTTTAGCTCTTA
* *
8152157 TGTGCTTCAGTTTAGC
1 TGGGCTTCCGTTTAGC
8152173 CTTCGGGCTT
Statistics
Matches: 96, Mismatches: 44, Indels: 4
0.67 0.31 0.03
Matches are distributed among these distances:
20 4 0.04
21 89 0.93
22 3 0.03
ACGTcount: A:0.14, C:0.21, G:0.20, T:0.44
Consensus pattern (21 bp):
TGGGCTTCCGTTTAGCTCTTA
Found at i:8152164 original size:84 final size:84
Alignment explanation
Indices: 8152000--8152164 Score: 208
Period size: 84 Copynumber: 2.0 Consensus size: 84
8151990 GAGTTTTTGT
* * * *
8152000 TTAACCCTATTGGGTTTCCGTTTAGCTCTTTTGAGCTTCTGTTTAACACTTATGGGTTTCCGTTC
1 TTAACCCTATTGGGTTTCCGTTTAGCTCTTATGAGCTTCCGTTGAACACTTACGGGTTTCCGTTC
* *
8152065 AGCTCTTTTGAGCTTCTAA
66 AGCACTTATGAGCTTCTAA
* *
8152084 TTAACCCT-TATGGGTTTCCGTTTAGCTCTTATGAGCTTCCGTTCGATC-CTTACGGGTTTCTGT
1 TTAACCCTAT-TGGGTTTCCGTTTAGCTCTTATGAGCTTCCGTT-GAACACTTACGGGTTTCCGT
* *
8152147 TTAGCACTTATGTGCTTC
64 TCAGCACTTATGAGCTTC
8152165 AGTTTAGCCT
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
83 1 0.01
84 66 0.96
85 2 0.03
ACGTcount: A:0.15, C:0.22, G:0.19, T:0.44
Consensus pattern (84 bp):
TTAACCCTATTGGGTTTCCGTTTAGCTCTTATGAGCTTCCGTTGAACACTTACGGGTTTCCGTTC
AGCACTTATGAGCTTCTAA
Found at i:8153006 original size:17 final size:17
Alignment explanation
Indices: 8152984--8153034 Score: 77
Period size: 17 Copynumber: 3.0 Consensus size: 17
8152974 CAGATTATCA
8152984 GAAGCTTGATTGGGTTG
1 GAAGCTTGATTGGGTTG
*
8153001 GAAGCTCGATTGGGTTG
1 GAAGCTTGATTGGGTTG
8153018 GAAGCTTG-TTGGAGTTG
1 GAAGCTTGATTGG-GTTG
8153035 TATCACACTA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.13
17 27 0.87
ACGTcount: A:0.18, C:0.08, G:0.41, T:0.33
Consensus pattern (17 bp):
GAAGCTTGATTGGGTTG
Found at i:8183812 original size:66 final size:64
Alignment explanation
Indices: 8183726--8183933 Score: 163
Period size: 63 Copynumber: 3.3 Consensus size: 64
8183716 AAATATATTT
* *
8183726 AATATTAATTATTTCAAATTTTTTTTTATAGTATCAAATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTA-TTAAAATTTTTTTTTA-AGTATCATATATTATGATTTGAGTAAATTCATATAA
8183791 G
64 G
* * * * * *
8183792 ACTATTAATTATTAAGAA--TTTTATTAA--ATTATATATT-TTAATT-A-T-AATAT-ATTTAA
1 AATATTAATTATTAA-AATTTTTTTTTAAGTATCATATATTATGATTTGAGTAAAT-TCATATAA
*
8183848 T
64 G
*
8183849 AATTATT-ATT-TT--AATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTCATATA
1 AA-TATTAATTATTAAAATTT-TTTTTTA-AGTATCATATATTATGATTTGAGTAAATTCATATA
8183910 AG
63 AG
8183912 AATATTAATTATTAAGAATTTT
1 AATATTAATTATTAA-AATTTT
8183934 ATTAAATTAT
Statistics
Matches: 106, Mismatches: 17, Indels: 38
0.66 0.11 0.24
Matches are distributed among these distances:
53 2 0.02
55 1 0.01
56 7 0.07
57 13 0.12
58 6 0.06
59 10 0.09
60 8 0.08
61 9 0.08
62 6 0.06
63 14 0.13
64 9 0.08
65 3 0.03
66 13 0.12
67 5 0.05
ACGTcount: A:0.41, C:0.03, G:0.06, T:0.50
Consensus pattern (64 bp):
AATATTAATTATTAAAATTTTTTTTTAAGTATCATATATTATGATTTGAGTAAATTCATATAAG
Found at i:8183814 original size:120 final size:120
Alignment explanation
Indices: 8183688--8183977 Score: 476
Period size: 120 Copynumber: 2.4 Consensus size: 120
8183678 AATTATTTTA
* *
8183688 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTT-TTTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATTT-AAATTTATATTT
* *
8183752 TATAGTATCAAATATTATGATTTGAGTAAATTCATATAAGACTATTAATTATTAAG
65 TACAGTATCAAATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
8183808 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATT-ATTATTTTAATTTATATTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAAT-ATTAATTATTTAAATTTATATTT
*
8183872 TACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TACAGTATCAAATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
8183928 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTAT
8183978 GTTTAAATAT
Statistics
Matches: 158, Mismatches: 9, Indels: 6
0.91 0.05 0.03
Matches are distributed among these distances:
119 7 0.04
120 148 0.94
121 3 0.02
ACGTcount: A:0.43, C:0.03, G:0.04, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATTTAAATTTATATTTT
ACAGTATCAAATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:8183870 original size:15 final size:14
Alignment explanation
Indices: 8183818--8183873 Score: 55
Period size: 15 Copynumber: 4.1 Consensus size: 14
8183808 AATTTTATTA
8183818 AATTATA-TATTTT
1 AATTATATTATTTT
*
8183831 AATTATAATATATTT
1 AATTATATTAT-TTT
*
8183846 AATAATTATTATTTT
1 AATTA-TATTATTTT
8183861 AATT-TA-TATTTT
1 AATTATATTATTTT
8183873 A
1 A
8183874 CAGTATCATA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
12 7 0.19
13 9 0.24
14 3 0.08
15 13 0.35
16 5 0.14
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
AATTATATTATTTT
Found at i:8183957 original size:18 final size:17
Alignment explanation
Indices: 8183929--8183963 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8183919 ATTATTAAGA
*
8183929 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
8183946 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
8183964 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:8184077 original size:147 final size:149
Alignment explanation
Indices: 8183917--8184191 Score: 509
Period size: 147 Copynumber: 1.9 Consensus size: 149
8183907 ATAAGAATAT
*
8183917 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
8183982 AAATATGATTAAATTATTTATTATTGAT-ATTAATAATCTTATTAAAATTTAAATAA-AATAATT
66 AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
8184045 TACCAAAACAAATTTCTGC
131 TACCAAAACAAATTTCTGC
8184064 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
8184129 AAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
8184192 CAATAATCAT
Statistics
Matches: 123, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
147 91 0.74
148 27 0.22
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (149 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
TACCAAAACAAATTTCTGC
Found at i:8184104 original size:18 final size:17
Alignment explanation
Indices: 8184076--8184110 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8184066 ATTATTAAGA
*
8184076 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
8184093 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
8184111 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:8184321 original size:44 final size:45
Alignment explanation
Indices: 8184272--8184366 Score: 129
Period size: 45 Copynumber: 2.1 Consensus size: 45
8184262 TTACACCTCT
* * *
8184272 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACATCTATTCC
** *
8184316 ATTACATTCAACCAAACAGTTGATTTGCTATTACACATCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACATCTATTCC
8184361 ATTACA
1 ATTACA
8184367 CCTCTAATCC
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 18 0.41
45 26 0.59
ACGTcount: A:0.34, C:0.26, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACATCTATTCC
Found at i:8184366 original size:16 final size:16
Alignment explanation
Indices: 8184347--8184398 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
8184337 GATTTGCTAT
* * *
8184347 TACACATCTATTCCAT
1 TACACCTCTAATCCAA
8184363 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
8184379 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
8184395 TACA
1 TACA
8184399 GCGAACCAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.37, C:0.35, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:8187028 original size:102 final size:102
Alignment explanation
Indices: 8186852--8187058 Score: 414
Period size: 102 Copynumber: 2.0 Consensus size: 102
8186842 GTCTTTCAAA
8186852 TTTATTGCATATTGTTACATTCTCTTCAGGGAATGGTTAGATTCATGATTAAAAATCGTTGTTCA
1 TTTATTGCATATTGTTACATTCTCTTCAGGGAATGGTTAGATTCATGATTAAAAATCGTTGTTCA
8186917 ATCATAAGTAAACATGATATTAACTCTTGAAATTTTT
66 ATCATAAGTAAACATGATATTAACTCTTGAAATTTTT
8186954 TTTATTGCATATTGTTACATTCTCTTCAGGGAATGGTTAGATTCATGATTAAAAATCGTTGTTCA
1 TTTATTGCATATTGTTACATTCTCTTCAGGGAATGGTTAGATTCATGATTAAAAATCGTTGTTCA
8187019 ATCATAAGTAAACATGATATTAACTCTTGAAATTTTT
66 ATCATAAGTAAACATGATATTAACTCTTGAAATTTTT
8187056 TTT
1 TTT
8187059 CACGATACTG
Statistics
Matches: 105, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
102 105 1.00
ACGTcount: A:0.32, C:0.12, G:0.14, T:0.43
Consensus pattern (102 bp):
TTTATTGCATATTGTTACATTCTCTTCAGGGAATGGTTAGATTCATGATTAAAAATCGTTGTTCA
ATCATAAGTAAACATGATATTAACTCTTGAAATTTTT
Found at i:8188849 original size:14 final size:13
Alignment explanation
Indices: 8188828--8188868 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
8188818 TTTTAATATT
*
8188828 TTTATTTTTTTAC
1 TTTATTTTTTTTC
*
8188841 TTTATTTTTCTCTC
1 TTTATTTTT-TTTC
8188855 TTTATTTTTTTTC
1 TTTATTTTTTTTC
8188868 T
1 T
8188869 ATTTTTTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 13 0.54
14 11 0.46
ACGTcount: A:0.10, C:0.12, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTATTTTTTTTC
Found at i:8189114 original size:21 final size:20
Alignment explanation
Indices: 8189086--8189125 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
8189076 ATAACACAAT
**
8189086 TATAAAATTTGTAAAAAATA
1 TATAAAATTACTAAAAAATA
8189106 TATACAAATTACTAAAAAAT
1 TATA-AAATTACTAAAAAAT
8189126 TATTTAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.33
Consensus pattern (20 bp):
TATAAAATTACTAAAAAATA
Found at i:8191715 original size:16 final size:16
Alignment explanation
Indices: 8191691--8191729 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
8191681 TTATAATCAT
8191691 TATATTTTATTTAATAA
1 TATA-TTTATTTAATAA
* *
8191708 TTTATTTATTTATTAA
1 TATATTTATTTAATAA
8191724 TATATT
1 TATATT
8191730 AATTATGATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 16 0.84
17 3 0.16
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
TATATTTATTTAATAA
Found at i:8191746 original size:6 final size:6
Alignment explanation
Indices: 8191729--8191765 Score: 65
Period size: 6 Copynumber: 6.2 Consensus size: 6
8191719 ATTAATATAT
*
8191729 TAATTA TGATTA TAATTA TAATTA TAATTA TAATTA T
1 TAATTA TAATTA TAATTA TAATTA TAATTA TAATTA T
8191766 GACTGGGGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (6 bp):
TAATTA
Found at i:8195346 original size:376 final size:376
Alignment explanation
Indices: 8194653--8195408 Score: 1503
Period size: 376 Copynumber: 2.0 Consensus size: 376
8194643 ATAGCTAACG
8194653 TTAACCCGAATTTCTCGACTAAGAGTCGATGAGTGCTAGACACACTTTTACTTCGGTTATACCAA
1 TTAACCCGAATTTCTCGACTAAGAGTCGATGAGTGCTAGACACACTTTTACTTCGGTTATACCAA
8194718 TGAGCGCATAGCACAATTTATTTACTTCGGATTTATCTGAAGAGGCACCGAGTAACAAATCGATG
66 TGAGCGCATAGCACAATTTATTTACTTCGGATTTATCTGAAGAGGCACCGAGTAACAAATCGATG
8194783 TGATTAGTTGGATCCGTGTATCCGTTCGAGTTTGAGCCAGGTTAATAGGGAATAAAAATGTGAAA
131 TGATTAGTTGGATCCGTGTATCCGTTCGAGTTTGAGCCAGGTTAATAGGGAATAAAAATGTGAAA
8194848 TGGACAATGATATATGAATGATCATTGTTGTGAAAAAATTATGTAAACCAGATTTATAAATTCAA
196 TGGACAATGATATATGAATGATCATTGTTGTGAAAAAATTATGTAAACCAGATTTATAAATTCAA
8194913 AAGATTGGGACAAAATTGAAATAAAATGACCAAATTGATTCAATATATGTGATATTAAAGTGTTA
261 AAGATTGGGACAAAATTGAAATAAAATGACCAAATTGATTCAATATATGTGATATTAAAGTGTTA
8194978 TACGTATACACTAGTTAAATAAACATACATGAAACCATTATAGATTGTATA
326 TACGTATACACTAGTTAAATAAACATACATGAAACCATTATAGATTGTATA
8195029 TTAACCCGAATTTCTCGACTAAGAGTCGATGAGTGCTAGACACACTTTTACTTCGGTTATACCAA
1 TTAACCCGAATTTCTCGACTAAGAGTCGATGAGTGCTAGACACACTTTTACTTCGGTTATACCAA
*
8195094 TGAGCGCATAGCACAATTTATTTACTTCGGATTTATCTGAAGAGGCACCGAGTAACAAATTGATG
66 TGAGCGCATAGCACAATTTATTTACTTCGGATTTATCTGAAGAGGCACCGAGTAACAAATCGATG
8195159 TGATTAGTTGGATCCGTGTATCCGTTCGAGTTTGAGCCAGGTTAATAGGGAATAAAAATGTGAAA
131 TGATTAGTTGGATCCGTGTATCCGTTCGAGTTTGAGCCAGGTTAATAGGGAATAAAAATGTGAAA
8195224 TGGACAATGATATATGAATGATCATTGTTGTGAAAAAATTATGTAAACCAGATTTATAAATTCAA
196 TGGACAATGATATATGAATGATCATTGTTGTGAAAAAATTATGTAAACCAGATTTATAAATTCAA
8195289 AAGATTGGGACAAAATTGAAATAAAATGACCAAATTGATTCAATATATGTGATATTAAAGTGTTA
261 AAGATTGGGACAAAATTGAAATAAAATGACCAAATTGATTCAATATATGTGATATTAAAGTGTTA
8195354 TACGTATACACTAGTTAAATAAACATACATGAAACCATTATAGATTGTATA
326 TACGTATACACTAGTTAAATAAACATACATGAAACCATTATAGATTGTATA
8195405 TTAA
1 TTAA
8195409 TACCTTAGAT
Statistics
Matches: 379, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
376 379 1.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (376 bp):
TTAACCCGAATTTCTCGACTAAGAGTCGATGAGTGCTAGACACACTTTTACTTCGGTTATACCAA
TGAGCGCATAGCACAATTTATTTACTTCGGATTTATCTGAAGAGGCACCGAGTAACAAATCGATG
TGATTAGTTGGATCCGTGTATCCGTTCGAGTTTGAGCCAGGTTAATAGGGAATAAAAATGTGAAA
TGGACAATGATATATGAATGATCATTGTTGTGAAAAAATTATGTAAACCAGATTTATAAATTCAA
AAGATTGGGACAAAATTGAAATAAAATGACCAAATTGATTCAATATATGTGATATTAAAGTGTTA
TACGTATACACTAGTTAAATAAACATACATGAAACCATTATAGATTGTATA
Found at i:8197388 original size:17 final size:17
Alignment explanation
Indices: 8197358--8197391 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8197348 TTGTATGTGC
* *
8197358 TTGTATATATATATATA
1 TTGTAAATACATATATA
8197375 TTGTAAATACATATATA
1 TTGTAAATACATATATA
8197392 CACAGTTTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (17 bp):
TTGTAAATACATATATA
Found at i:8201641 original size:35 final size:35
Alignment explanation
Indices: 8201595--8201662 Score: 127
Period size: 35 Copynumber: 1.9 Consensus size: 35
8201585 ATAAAAATAG
*
8201595 TTTGGATTTGAATCCTAATTATATTTTAAACCCAA
1 TTTGGATTTGAATCCTAACTATATTTTAAACCCAA
8201630 TTTGGATTTGAATCCTAACTATATTTTAAACCC
1 TTTGGATTTGAATCCTAACTATATTTTAAACCC
8201663 CATATAATTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.32, C:0.16, G:0.09, T:0.43
Consensus pattern (35 bp):
TTTGGATTTGAATCCTAACTATATTTTAAACCCAA
Found at i:8202418 original size:59 final size:60
Alignment explanation
Indices: 8202314--8202437 Score: 144
Period size: 59 Copynumber: 2.1 Consensus size: 60
8202304 AAGCAAAAAT
* * ** * * *
8202314 AAAAGATTAGATATCAAATTAGGAAAAAGTGTCGAGTTTATGTACTAAATGGGACC-CAA
1 AAAAGATTAAATATCAAATTAAGAAAAAGTGTAAAATTCAAGTACTAAATGGGACCACAA
* *
8202373 AAAAGATTAAATATCAAATTAAGAAAATA-TGTAAAATTCAAGTACTAAATTGGACCATAA
1 AAAAGATTAAATATCAAATTAAGAAAA-AGTGTAAAATTCAAGTACTAAATGGGACCACAA
8202433 AAAAG
1 AAAAG
8202438 TCAAGGTACC
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
59 46 0.85
60 8 0.15
ACGTcount: A:0.51, C:0.09, G:0.15, T:0.25
Consensus pattern (60 bp):
AAAAGATTAAATATCAAATTAAGAAAAAGTGTAAAATTCAAGTACTAAATGGGACCACAA
Found at i:8205718 original size:19 final size:19
Alignment explanation
Indices: 8205694--8205737 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
8205684 TAAAAGTAAC
8205694 ACAACATCAATCCAAATAA
1 ACAACATCAATCCAAATAA
* *
8205713 ACAACATGATTCCAAATAA
1 ACAACATCAATCCAAATAA
8205732 ACAACA
1 ACAACA
8205738 AAAAAATACA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.57, C:0.25, G:0.02, T:0.16
Consensus pattern (19 bp):
ACAACATCAATCCAAATAA
Found at i:8207681 original size:29 final size:29
Alignment explanation
Indices: 8207649--8207707 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
8207639 TAATTTTTAA
*
8207649 ATGTAGTGTTTTTTAAAAATAAAAAATAT
1 ATGTAGTGTATTTTAAAAATAAAAAATAT
*
8207678 ATGTGGTGTATTTTAAAAATAAAAAATAT
1 ATGTAGTGTATTTTAAAAATAAAAAATAT
8207707 A
1 A
8207708 GTTTATATTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.39
Consensus pattern (29 bp):
ATGTAGTGTATTTTAAAAATAAAAAATAT
Found at i:8209795 original size:32 final size:32
Alignment explanation
Indices: 8209754--8209818 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
8209744 ATTGAAAATT
*
8209754 TCACAATCTCAAATTGATATCGGATTACTTAG
1 TCACAATCTCAAATTGATATCGAATTACTTAG
8209786 TCACAATCTCAAATTGATATCGAATTACTTAG
1 TCACAATCTCAAATTGATATCGAATTACTTAG
8209818 T
1 T
8209819 ACTTACACAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.35
Consensus pattern (32 bp):
TCACAATCTCAAATTGATATCGAATTACTTAG
Found at i:8215466 original size:47 final size:46
Alignment explanation
Indices: 8215345--8215483 Score: 130
Period size: 44 Copynumber: 3.1 Consensus size: 46
8215335 GAATTTGGGC
8215345 CATTACAATTATATTTAATATTAATTA-TTT-TAAATTATATAAATT
1 CATTA-AATTATATTTAATATTAATTATTTTATAAATTATATAAATT
* * * ** *
8215390 CATATAAGA--AAATTTATTATCAAGAATTTTATGAAATTATATATCATT
1 CAT-TAA-ATTATATTTAATATTAATTATTTTAT-AAATTATATA-AATT
8215438 -ATTAAATTATATTTAATATTAATTA-TTT-TAAATTATATAAATT
1 CATTAAATTATATTTAATATTAATTATTTTATAAATTATATAAATT
8215481 CAT
1 CAT
8215484 ATAAGAAAAT
Statistics
Matches: 73, Mismatches: 12, Indels: 19
0.70 0.12 0.18
Matches are distributed among these distances:
43 3 0.04
44 24 0.33
45 9 0.12
46 10 0.14
47 24 0.33
48 3 0.04
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.48
Consensus pattern (46 bp):
CATTAAATTATATTTAATATTAATTATTTTATAAATTATATAAATT
Found at i:8215510 original size:47 final size:45
Alignment explanation
Indices: 8215366--8215533 Score: 166
Period size: 47 Copynumber: 3.6 Consensus size: 45
8215356 TATTTAATAT
8215366 TAATTATTTTAAATTATATAAATTCATATAAGAAAATTTATTATCAA
1 TAATTATTTTAAATTATATAAA-TCATATAAGAAAATTTATTAT-AA
* * ** *
8215413 GAATT-TTATGAAATTATAT--ATCAT-T-ATTAAATTATATTTAATAT
1 TAATTATT-TTAAATTATATAAATCATATAAGAAAATT-TA-TT-ATAA
8215457 TAATTATTTTAAATTATATAAATTCATATAAGAAAATTTATTAGTAA
1 TAATTATTTTAAATTATATAAA-TCATATAAGAAAATTTATTA-TAA
*
8215504 TAATTATTTTAAATTTTATTAAATCATATA
1 TAATTATTTTAAATTATA-TAAATCATATA
8215534 TTTTAATTAA
Statistics
Matches: 98, Mismatches: 11, Indels: 24
0.74 0.08 0.18
Matches are distributed among these distances:
42 6 0.06
43 3 0.03
44 21 0.21
45 5 0.05
46 4 0.04
47 46 0.47
48 7 0.07
49 6 0.06
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (45 bp):
TAATTATTTTAAATTATATAAATCATATAAGAAAATTTATTATAA
Found at i:8216155 original size:15 final size:15
Alignment explanation
Indices: 8216120--8216161 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
8216110 TTAAGAATTT
*
8216120 TATTAAATTAT-ATA
1 TATTTAATTATAATA
8216134 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
8216148 TATTTAATAATAAT
1 TATTTAATTATAAT
8216162 TATGTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:8216170 original size:120 final size:120
Alignment explanation
Indices: 8215515--8216160 Score: 1161
Period size: 120 Copynumber: 5.4 Consensus size: 120
8215505 AATTATTTTA
* * *
8215515 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAAATATCTCAAATTATATTTT
1 AATTTTATTAAATCATATATTTTAATTAAATTTTATTTAATAATAAATATTTCAAATTATATTTT
*
8215580 ATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
8215635 AATTTTATTAAATCATATATTTTAATTAAATTTTATTTAATAATAAATATTTCAAATTATATTTT
1 AATTTTATTAAATCATATATTTTAATTAAATTTTATTTAATAATAAATATTTCAAATTATATTTT
*
8215700 ATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
8215755 AATTTTATTAAATCATATATTTTAATTAAATTTTATTTAATAATAAATATTTCAAATTATATTTT
1 AATTTTATTAAATCATATATTTTAATTAAATTTTATTTAATAATAAATATTTCAAATTATATTTT
8215820 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
8215875 AATTTTATTAAATCATATATTTTAATTAAATTTTATTTAATAATAAATATTTCAAATTATATTTT
1 AATTTTATTAAATCATATATTTTAATTAAATTTTATTTAATAATAAATATTTCAAATTATATTTT
8215940 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
* * * *
8215995 AATTTTATTAAATTATATATTTTAATTAAAATGTATTTAATAATAATTATATT-AAATTATATTT
1 AATTTTATTAAATCATATATTTTAATTAAATTTTATTTAATAATAAATAT-TTCAAATTATATTT
8216059 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
* *
8216115 AATTTTATTAAATTATATATTTTAATTATAA-TATATTTAATAATAA
1 AATTTTATTAAATCATATATTTTAATTA-AATTTTATTTAATAATAA
8216161 TTATGTTAAA
Statistics
Matches: 515, Mismatches: 9, Indels: 4
0.98 0.02 0.01
Matches are distributed among these distances:
120 511 0.99
121 4 0.01
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.48
Consensus pattern (120 bp):
AATTTTATTAAATCATATATTTTAATTAAATTTTATTTAATAATAAATATTTCAAATTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
Found at i:8217238 original size:16 final size:16
Alignment explanation
Indices: 8217219--8217251 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
8217209 TTCATGTTAC
*
8217219 TTTGGTTATCCTTTGT
1 TTTGCTTATCCTTTGT
8217235 TTTGCTTATCCTTTGT
1 TTTGCTTATCCTTTGT
8217251 T
1 T
8217252 ATATTGTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.15, G:0.15, T:0.64
Consensus pattern (16 bp):
TTTGCTTATCCTTTGT
Found at i:8219532 original size:33 final size:33
Alignment explanation
Indices: 8219495--8219563 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 33
8219485 TTTAAATTAT
* * *
8219495 ATTTTATAGTATTATGTATTATGATTTTAGTAA
1 ATTTTATAGTATCATATATTATGATTTGAGTAA
8219528 ATTTTATAGTATCATATATTATGATTTGAGTAA
1 ATTTTATAGTATCATATATTATGATTTGAGTAA
8219561 ATT
1 ATT
8219564 CATATAAGAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.35, C:0.01, G:0.12, T:0.52
Consensus pattern (33 bp):
ATTTTATAGTATCATATATTATGATTTGAGTAA
Found at i:8219623 original size:16 final size:16
Alignment explanation
Indices: 8219602--8219643 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
8219592 TTATTAAATT
*
8219602 ATATATTTTAATTATA
1 ATATATTTTAATAATA
8219618 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
8219633 AT-TATGTTTAA
1 ATATAT-TTTAA
8219644 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:8219628 original size:15 final size:15
Alignment explanation
Indices: 8219593--8219634 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
8219583 TTAAGAATTT
*
8219593 TATTAAATTAT-ATA
1 TATTTAATTATAATA
8219607 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
8219621 TATTTAATAATAAT
1 TATTTAATTATAAT
8219635 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:8219814 original size:39 final size:40
Alignment explanation
Indices: 8219771--8219875 Score: 113
Period size: 44 Copynumber: 2.5 Consensus size: 40
8219761 TTCCATTATG
8219771 CTATTACACCTCTATTCCATTCAACCAAACACAAGA-TTA
1 CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
* *** *
8219810 CTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATTTG
1 CTATTACACCTCTATT-C----CATTCAACCAAACACAAGATTTA
8219855 CTATTACACCTCTATTCCATT
1 CTATTACACCTCTATTCCATT
8219876 ACACCTCTAA
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
39 15 0.28
40 5 0.09
44 17 0.31
45 17 0.31
ACGTcount: A:0.31, C:0.30, G:0.05, T:0.34
Consensus pattern (40 bp):
CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
Found at i:8219869 original size:45 final size:44
Alignment explanation
Indices: 8219769--8219878 Score: 131
Period size: 45 Copynumber: 2.6 Consensus size: 44
8219759 TTTTCCATTA
8219769 TGCTATTACACCTCTATT-C----CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
* * ***
8219808 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGA-T
8219853 TGCTATTACACCTCTATTCCATTACA
1 TGCTATTACACCTCTATTCCATTACA
8219879 CCTCTAATCC
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
44 16 0.28
45 25 0.43
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (44 bp):
TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
Found at i:8219898 original size:32 final size:32
Alignment explanation
Indices: 8219857--8219919 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
8219847 TTGATTTGCT
8219857 ATTACACCTCTATTCCATTACACCTCTAATCC
1 ATTACACCTCTATTCCATTACACCTCTAATCC
**
8219889 ATTACACCTCTATTCCATTATGCCTCTAATC
1 ATTACACCTCTATTCCATTACACCTCTAATC
8219920 TAATACAGCG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.27, C:0.35, G:0.02, T:0.37
Consensus pattern (32 bp):
ATTACACCTCTATTCCATTACACCTCTAATCC
Found at i:8219916 original size:16 final size:16
Alignment explanation
Indices: 8219857--8219908 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
8219847 TTGATTTGCT
8219857 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
8219873 ATTACACCTCTAATCC
1 ATTACACCTCTATTCC
8219889 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
8219905 ATTA
1 ATTA
8219909 TGCCTCTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.29, C:0.35, G:0.00, T:0.37
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:8219975 original size:7 final size:7
Alignment explanation
Indices: 8219965--8219991 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
8219955 GTAAAAATAA
8219965 ATATATG
1 ATATATG
8219972 ATATATG
1 ATATATG
8219979 ATATATG
1 ATATATG
8219986 ATATAT
1 ATATAT
8219992 TGTAGAAGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (7 bp):
ATATATG
Found at i:8220089 original size:20 final size:20
Alignment explanation
Indices: 8220054--8220122 Score: 56
Period size: 20 Copynumber: 3.5 Consensus size: 20
8220044 TTAGACCCAT
*
8220054 ATATAATA-AT-TGATTATA
1 ATATAATATATATTATTATA
8220072 ATATAATATATATTATTAGT-
1 ATATAATATATATTATTA-TA
*
8220092 ATA-AATATAATATTATTTTA
1 ATATAATAT-ATATTATTATA
*
8220112 AAATCAATATA
1 ATAT-AATATA
8220123 GGGGTATAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
18 8 0.20
19 8 0.20
20 18 0.44
21 2 0.05
22 5 0.12
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (20 bp):
ATATAATATATATTATTATA
Found at i:8220099 original size:17 final size:18
Alignment explanation
Indices: 8220073--8220106 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
8220063 TTGATTATAA
*
8220073 TATAATATATATTATTAG
1 TATAATATATAATATTAG
8220091 TATAA-ATATAATATTA
1 TATAATATATAATATTA
8220107 TTTTAAAATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (18 bp):
TATAATATATAATATTAG
Found at i:8220120 original size:22 final size:24
Alignment explanation
Indices: 8220071--8220122 Score: 63
Period size: 22 Copynumber: 2.2 Consensus size: 24
8220061 AATTGATTAT
**
8220071 AATATAATATATATTATTAGTATA
1 AATATAATATATATTATTAAAATA
*
8220095 AATATAATAT-TATT-TTAAAATC
1 AATATAATATATATTATTAAAATA
8220117 AATATA
1 AATATA
8220123 GGGGTATAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 11 0.44
23 4 0.16
24 10 0.40
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (24 bp):
AATATAATATATATTATTAAAATA
Found at i:8225108 original size:35 final size:34
Alignment explanation
Indices: 8225062--8225135 Score: 85
Period size: 34 Copynumber: 2.1 Consensus size: 34
8225052 GTAATTAACA
* *
8225062 AATCCCCATTTTGATGGCGGAGAGAAAAAAAAACT
1 AATCCACATTTT-ATGGCCGAGAGAAAAAAAAACT
* * *
8225097 AATCCACATTTTCTGGCCGAGTGAAAAAACAACT
1 AATCCACATTTTATGGCCGAGAGAAAAAAAAACT
*
8225131 GATCC
1 AATCC
8225136 TCATCCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
34 22 0.67
35 11 0.33
ACGTcount: A:0.39, C:0.22, G:0.18, T:0.22
Consensus pattern (34 bp):
AATCCACATTTTATGGCCGAGAGAAAAAAAAACT
Found at i:8234362 original size:22 final size:23
Alignment explanation
Indices: 8234323--8234369 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
8234313 CTAATGGAAT
*
8234323 AAAATTATTTAAAGTTAAATTAA
1 AAAATTATATAAAGTTAAATTAA
*
8234346 AAAATTATATACA-TTAAATTAA
1 AAAATTATATAAAGTTAAATTAA
8234368 AA
1 AA
8234370 TTTTGTTATC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (23 bp):
AAAATTATATAAAGTTAAATTAA
Found at i:8234612 original size:18 final size:19
Alignment explanation
Indices: 8234591--8234631 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
8234581 AATTTGAAAA
*
8234591 TTTTATAAA-TATTTGGAT
1 TTTTAAAAATTATTTGGAT
*
8234609 TTTTAAAAATTATTTTGAT
1 TTTTAAAAATTATTTGGAT
8234628 TTTT
1 TTTT
8234632 TTTTGAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.32, C:0.00, G:0.07, T:0.61
Consensus pattern (19 bp):
TTTTAAAAATTATTTGGAT
Found at i:8236936 original size:29 final size:30
Alignment explanation
Indices: 8236894--8236972 Score: 88
Period size: 29 Copynumber: 2.6 Consensus size: 30
8236884 GAACTGGATC
* *
8236894 AAATTAAAATTTCATGTATAAAACTATACA-
1 AAATT-AAAGTTCATGTATAAAACTACACAT
* *
8236924 AAATTAAAGTTCATGTATACAATTACACATT
1 AAATTAAAGTTCATGTATAAAACTACACA-T
*
8236955 AAATTATAGTTCATGTAT
1 AAATTAAAGTTCATGTAT
8236973 TTTTTTTAGA
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
29 20 0.48
30 5 0.12
31 17 0.40
ACGTcount: A:0.47, C:0.10, G:0.06, T:0.37
Consensus pattern (30 bp):
AAATTAAAGTTCATGTATAAAACTACACAT
Found at i:8237473 original size:22 final size:22
Alignment explanation
Indices: 8237448--8237490 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
8237438 TATCTAAATA
8237448 ATAACAACAAAAT-AGTAGCAAT
1 ATAACAACAAAATGA-TAGCAAT
* *
8237470 ATAATAGCAAAATGATAGCAA
1 ATAACAACAAAATGATAGCAA
8237491 AACTGCAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 17 0.94
23 1 0.06
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATGATAGCAAT
Found at i:8238819 original size:28 final size:28
Alignment explanation
Indices: 8238779--8238836 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
8238769 TATCAGAGTT
8238779 AGTCTCTTTTTGATAGTTTAACAACCAA
1 AGTCTCTTTTTGATAGTTTAACAACCAA
8238807 AGTCTCTTTTTGATAGTTTAACAACCAA
1 AGTCTCTTTTTGATAGTTTAACAACCAA
8238835 AG
1 AG
8238837 AGAATATCCG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (28 bp):
AGTCTCTTTTTGATAGTTTAACAACCAA
Found at i:8240051 original size:25 final size:25
Alignment explanation
Indices: 8240020--8240067 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
8240010 GAGGATGCGG
8240020 AGATATGTTTGTGTAGCCTCTGAAA
1 AGATATGTTTGTGTAGCCTCTGAAA
8240045 AGATATGTTTGTGTAGCCTCTGA
1 AGATATGTTTGTGTAGCCTCTGA
8240068 TAGGGAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.38
Consensus pattern (25 bp):
AGATATGTTTGTGTAGCCTCTGAAA
Found at i:8242615 original size:22 final size:22
Alignment explanation
Indices: 8242583--8242636 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
8242573 ATATTTATGC
*
8242583 ATTTATTATTATAA-TTGTAATT
1 ATTTATAATTA-AAGTTGTAATT
* *
8242605 ATTTTTAATTAAAGTTTTAATT
1 ATTTATAATTAAAGTTGTAATT
8242627 ATTTATAATT
1 ATTTATAATT
8242637 TTGTACAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 2 0.07
22 25 0.93
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (22 bp):
ATTTATAATTAAAGTTGTAATT
Found at i:8246913 original size:15 final size:15
Alignment explanation
Indices: 8246888--8246922 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
8246878 AACTCTATTT
*
8246888 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
8246902 TAATTAATATTAAGA
1 TAATTAATATTAAGA
8246917 TAATTA
1 TAATTA
8246923 TTAAGGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:8249298 original size:19 final size:19
Alignment explanation
Indices: 8249272--8249322 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
8249262 AAGTTGATAA
*
8249272 TTTTATTTCTT-TTGTTAT
1 TTTTATTTATTATTGTTAT
*
8249290 TTATTATTTATTATTTTTAT
1 TT-TTATTTATTATTGTTAT
8249310 TTTTATTT-TTATT
1 TTTTATTTATTATT
8249323 TCTCTTTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 7 0.24
19 14 0.48
20 8 0.28
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.78
Consensus pattern (19 bp):
TTTTATTTATTATTGTTAT
Found at i:8249318 original size:5 final size:6
Alignment explanation
Indices: 8249272--8249323 Score: 61
Period size: 6 Copynumber: 8.3 Consensus size: 6
8249262 AAGTTGATAA
*
8249272 TTTTAT TTCTT-T TGTTAT TTATTAT TTATTAT TTTTAT TTTTAT TTTTAT
1 TTTTAT TT-TTAT TTTTAT TT-TTAT TT-TTAT TTTTAT TTTTAT TTTTAT
8249322 TT
1 TT
8249324 CTCTTTATAC
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
5 2 0.05
6 24 0.59
7 15 0.37
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (6 bp):
TTTTAT
Found at i:8259787 original size:20 final size:20
Alignment explanation
Indices: 8259762--8259801 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
8259752 CGTAAAATGA
*
8259762 TTTTTGGAAAATGTTTTACT
1 TTTTTGGAAAATGATTTACT
*
8259782 TTTTTGTAAAATGATTTACT
1 TTTTTGGAAAATGATTTACT
8259802 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.05, G:0.12, T:0.55
Consensus pattern (20 bp):
TTTTTGGAAAATGATTTACT
Found at i:8259878 original size:32 final size:32
Alignment explanation
Indices: 8259803--8259881 Score: 95
Period size: 33 Copynumber: 2.4 Consensus size: 32
8259793 TGATTTACTG
* ** **
8259803 GAAAATATTTTCTGGTGTTTGATTGAATCTGT
1 GAAAATATTTTCTGCTGTTTGACAGAATCCCT
*
8259835 GTAAAATATTTTCTGCTGTTTGACAGATTCCCT
1 G-AAAATATTTTCTGCTGTTTGACAGAATCCCT
8259868 GAAAATATTTTCTG
1 GAAAATATTTTCTG
8259882 AAAAAGTTGT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
32 14 0.35
33 26 0.65
ACGTcount: A:0.27, C:0.11, G:0.18, T:0.44
Consensus pattern (32 bp):
GAAAATATTTTCTGCTGTTTGACAGAATCCCT
Found at i:8260924 original size:17 final size:17
Alignment explanation
Indices: 8260904--8260936 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8260894 TATAAATTAA
*
8260904 TTAAATATATTTTTATT
1 TTAAATATATATTTATT
8260921 TTAAATATATATTTAT
1 TTAAATATATATTTAT
8260937 AAATATTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TTAAATATATATTTATT
Found at i:8260946 original size:13 final size:12
Alignment explanation
Indices: 8260916--8260949 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
8260906 AAATATATTT
8260916 TTATTTTAAATA
1 TTATTTTAAATA
8260928 TATATTTATAAATA
1 T-TATTT-TAAATA
8260942 TTATTTTA
1 TTATTTTA
8260950 TATTATTATC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
12 3 0.15
13 10 0.50
14 7 0.35
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
TTATTTTAAATA
Found at i:8261305 original size:14 final size:13
Alignment explanation
Indices: 8261272--8261313 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 13
8261262 TACAGTGATA
8261272 AATTTAA-TTTTT
1 AATTTAATTTTTT
8261284 AATGTTTATATTTTTT
1 AA--TTTA-ATTTTTT
8261300 AATTTAATTTTTT
1 AATTTAATTTTTT
8261313 A
1 A
8261314 TTTTTTAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
12 2 0.08
13 8 0.31
14 8 0.31
15 1 0.04
16 7 0.27
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (13 bp):
AATTTAATTTTTT
Found at i:8261315 original size:20 final size:21
Alignment explanation
Indices: 8261281--8261321 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
8261271 AAATTTAATT
8261281 TTTAATGTTTATATTTTTTAA
1 TTTAATGTTTATATTTTTTAA
*
8261302 TTTAAT-TTTTTATTTTTTAA
1 TTTAATGTTTATATTTTTTAA
8261322 ATAATTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (21 bp):
TTTAATGTTTATATTTTTTAA
Found at i:8263113 original size:15 final size:15
Alignment explanation
Indices: 8263093--8263123 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
8263083 AGTGTTGGCA
8263093 TTTTTTACTATGAAT
1 TTTTTTACTATGAAT
8263108 TTTTTTACTATGAAT
1 TTTTTTACTATGAAT
8263123 T
1 T
8263124 AATGTTTAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.06, G:0.06, T:0.61
Consensus pattern (15 bp):
TTTTTTACTATGAAT
Found at i:8263525 original size:24 final size:24
Alignment explanation
Indices: 8263493--8263546 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
8263483 AATGTGAGGT
*
8263493 ATTTGGGGAGAATGATTTTTAACA
1 ATTTGGGGAGAATGATTTATAACA
* *
8263517 ATTTGGGGAGAGTGGTTTATAACA
1 ATTTGGGGAGAATGATTTATAACA
8263541 ATTTGG
1 ATTTGG
8263547 CTTCAATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.30, C:0.04, G:0.30, T:0.37
Consensus pattern (24 bp):
ATTTGGGGAGAATGATTTATAACA
Found at i:8264254 original size:26 final size:26
Alignment explanation
Indices: 8264199--8264254 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
8264189 CCTAATTTAA
* **
8264199 TTAATTCTTAAATATATTTTTAATTT
1 TTAACTCTTAAATATATTTTTAATAC
*
8264225 TTAACTCTTAAGTATATTTTTTAA-AC
1 TTAACTCTTAAATATA-TTTTTAATAC
8264251 TTAA
1 TTAA
8264255 TTAAAAAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
26 18 0.72
27 7 0.28
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.55
Consensus pattern (26 bp):
TTAACTCTTAAATATATTTTTAATAC
Found at i:8264271 original size:9 final size:9
Alignment explanation
Indices: 8264257--8264281 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
8264247 AAACTTAATT
8264257 AAAAAATAA
1 AAAAAATAA
8264266 AAAAAATAA
1 AAAAAATAA
8264275 AAAAAAT
1 AAAAAAT
8264282 CAACTGGCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (9 bp):
AAAAAATAA
Found at i:8265835 original size:2 final size:2
Alignment explanation
Indices: 8265828--8265865 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
8265818 ATCGGTATAT
8265828 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
8265866 AGCTCCTTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:8274277 original size:15 final size:15
Alignment explanation
Indices: 8274257--8274292 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
8274247 TCAAAATCTT
* *
8274257 TTTTTTCTATATATA
1 TTTTTTATAGATATA
8274272 TTTTTTATAGATATA
1 TTTTTTATAGATATA
8274287 TTTTTT
1 TTTTTT
8274293 TACACAAACT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.69
Consensus pattern (15 bp):
TTTTTTATAGATATA
Found at i:8282681 original size:35 final size:35
Alignment explanation
Indices: 8282635--8282707 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
8282625 CCTATAAACT
8282635 TTTGGCCACTAACGTTACATGTTTTGTCAAAATGA
1 TTTGGCCACTAACGTTACATGTTTTGTCAAAATGA
8282670 TTTGGCCACTAACGTTACATGTTTTGTCAAAATGA
1 TTTGGCCACTAACGTTACATGTTTTGTCAAAATGA
8282705 TTT
1 TTT
8282708 TAATTGTATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (35 bp):
TTTGGCCACTAACGTTACATGTTTTGTCAAAATGA
Found at i:8286226 original size:125 final size:126
Alignment explanation
Indices: 8286005--8286244 Score: 383
Period size: 125 Copynumber: 1.9 Consensus size: 126
8285995 TATCAAATTA
*
8286005 TTTTTTATACTATTCGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCAACTATAGTAAA
1 TTTTTTATACTATTCGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCAACTATAGCAAA
8286070 AGCACGTCCACGTGGGCACGATTTTAGAAATTCTTCTAATAAAGCATCTTGCTTGAAGCAT
66 AGCACGTCCACGTGGGCACGATTTTAGAAATTCTTCTAATAAAGCATCTTGCTTGAAGCAT
** * * *
8286131 TTTTTTATACTATTTTCTCGGAAACGTCAACTTGAAATTA-TTTTTCAGGACCAACTGTAGCAAA
1 TTTTTTATACTATTCGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCAACTATAGCAAA
* * * *
8286195 AGCGCGTCCTCGTGGGCGCGATTTTAGAAATTCTTCTGATAAAGCATCTT
66 AGCACGTCCACGTGGGCACGATTTTAGAAATTCTTCTAATAAAGCATCTT
8286245 AAACCCGAAA
Statistics
Matches: 104, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
125 68 0.65
126 36 0.35
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.35
Consensus pattern (126 bp):
TTTTTTATACTATTCGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCAACTATAGCAAA
AGCACGTCCACGTGGGCACGATTTTAGAAATTCTTCTAATAAAGCATCTTGCTTGAAGCAT
Found at i:8286338 original size:21 final size:22
Alignment explanation
Indices: 8286295--8286340 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
8286285 TTTTTCTCTA
* *
8286295 AACCCTAAAAACCTTAAACCCT
1 AACCCTAAAAACCTCAAAACCT
*
8286317 AACCTTAAAAA-CTCAAAACCT
1 AACCCTAAAAACCTCAAAACCT
8286338 AAC
1 AAC
8286341 GGTGGAGAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.50, C:0.33, G:0.00, T:0.17
Consensus pattern (22 bp):
AACCCTAAAAACCTCAAAACCT
Found at i:8286774 original size:17 final size:19
Alignment explanation
Indices: 8286748--8286782 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
8286738 CACTCCCACT
8286748 TTTTTCGG-TTTTACTTTA
1 TTTTTCGGTTTTTACTTTA
8286766 TTTTT-GGTTTTTACTTT
1 TTTTTCGGTTTTTACTTT
8286783 TAAAAATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 2 0.12
18 14 0.88
ACGTcount: A:0.09, C:0.09, G:0.11, T:0.71
Consensus pattern (19 bp):
TTTTTCGGTTTTTACTTTA
Found at i:8287409 original size:3 final size:3
Alignment explanation
Indices: 8287401--8287436 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
8287391 CAAACCTTTG
* *
8287401 TCT TCT TCT TCT TCT TCC TCT TCT TCT CCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
8287437 GCTGTGTTTG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (3 bp):
TCT
Found at i:8288855 original size:11 final size:10
Alignment explanation
Indices: 8288844--8288964 Score: 63
Period size: 10 Copynumber: 11.9 Consensus size: 10
8288834 AAAAAAGTAT
8288844 TTTTAAAATA
1 TTTTAAAATA
8288854 TTTT-AAA-A
1 TTTTAAAATA
*
8288862 TTTAAAAATTA
1 TTTTAAAA-TA
8288873 TTTTTAAAATA
1 -TTTTAAAATA
8288884 TTTTAAAAT-
1 TTTTAAAATA
***
8288893 TAAAAAAATTA
1 TTTTAAAA-TA
****
8288904 AAAAAAAAGTA
1 TTTTAAAA-TA
8288915 TTTTTAAAATA
1 -TTTTAAAATA
8288926 TTTT-AAA-A
1 TTTTAAAATA
*
8288934 TTTAAAAATTA
1 TTTTAAAA-TA
8288945 TTTTTAAAATA
1 -TTTTAAAATA
8288956 TTTTAAAAT
1 TTTTAAAAT
8288965 TAAAAAAATA
Statistics
Matches: 87, Mismatches: 13, Indels: 22
0.71 0.11 0.18
Matches are distributed among these distances:
8 8 0.09
9 17 0.20
10 27 0.31
11 17 0.20
12 18 0.21
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (10 bp):
TTTTAAAATA
Found at i:8288875 original size:30 final size:30
Alignment explanation
Indices: 8288834--8288971 Score: 132
Period size: 30 Copynumber: 4.2 Consensus size: 30
8288824 AAAATTAAAA
*
8288834 AAAAAAGTATTTTTAAAATATTTTAAAATT
1 AAAAAATTATTTTTAAAATATTTTAAAATT
*
8288864 TAAAAATTATTTTTAAAATATTTTAAAATT
1 AAAAAATTATTTTTAAAATATTTTAAAATT
*
8288894 AAAAAAATTAAAAAAAAAGTATTTTTAAAATATTTTAAAATT
1 -AAAAAATT--------A-T-TTTTAAAA-TATTTTAAAATT
*
8288936 TAAAAATTATTTTTAAAATATTTTAAAATT
1 AAAAAATTATTTTTAAAATATTTTAAAATT
8288966 AAAAAA
1 AAAAAA
8288972 ATAAAAAAAT
Statistics
Matches: 89, Mismatches: 7, Indels: 24
0.74 0.06 0.20
Matches are distributed among these distances:
30 45 0.51
31 14 0.16
32 1 0.01
33 1 0.01
39 1 0.01
40 1 0.01
41 14 0.16
42 12 0.13
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (30 bp):
AAAAAATTATTTTTAAAATATTTTAAAATT
Found at i:8288876 original size:73 final size:73
Alignment explanation
Indices: 8288790--8288980 Score: 352
Period size: 72 Copynumber: 2.7 Consensus size: 73
8288780 AAAAAAGTAT
*
8288790 TTTAAAAA-TATTTTGAAAATATTTTAAAATTAAAAAAATTAAAAAAAAAAGTATTTTTAAAATA
1 TTTAAAAATTATTTTTAAAATATTTTAAAATTAAAAAAATTAAAAAAAAAAGTATTTTTAAAATA
8288854 TTTTAAAA
66 TTTTAAAA
8288862 TTTAAAAATTATTTTTAAAATATTTTAAAATTAAAAAAATT-AAAAAAAAAGTATTTTTAAAATA
1 TTTAAAAATTATTTTTAAAATATTTTAAAATTAAAAAAATTAAAAAAAAAAGTATTTTTAAAATA
8288926 TTTTAAAA
66 TTTTAAAA
8288934 TTTAAAAATTATTTTTAAAATATTTTAAAATTAAAAAAA-TAAAAAAA
1 TTTAAAAATTATTTTTAAAATATTTTAAAATTAAAAAAATTAAAAAAA
8288981 TAAATATATT
Statistics
Matches: 116, Mismatches: 1, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
71 1 0.01
72 84 0.72
73 31 0.27
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.40
Consensus pattern (73 bp):
TTTAAAAATTATTTTTAAAATATTTTAAAATTAAAAAAATTAAAAAAAAAAGTATTTTTAAAATA
TTTTAAAA
Found at i:8288882 original size:54 final size:53
Alignment explanation
Indices: 8288760--8288872 Score: 164
Period size: 51 Copynumber: 2.2 Consensus size: 53
8288750 AAAAATTTAT
8288760 TTTAAAAATTAAAAAAATT---AAAAAAAGTATTTTAAAAATATTTTGAAAATA
1 TTTAAAAATTAAAAAAATTAAAAAAAAAAGTATTTTAAAAATATTTT-AAAATA
* *
8288811 TTTTAAAATTAAAAAAATTAAAAAAAAAAGTATTTTTAAAATATTTT-AAA-A
1 TTTAAAAATTAAAAAAATTAAAAAAAAAAGTATTTTAAAAATATTTTAAAATA
8288862 TTTAAAAATTA
1 TTTAAAAATTA
8288873 TTTTTAAAAT
Statistics
Matches: 56, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
51 29 0.52
52 3 0.05
54 24 0.43
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (53 bp):
TTTAAAAATTAAAAAAATTAAAAAAAAAAGTATTTTAAAAATATTTTAAAATA
Found at i:8292826 original size:3 final size:3
Alignment explanation
Indices: 8292818--8292859 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
8292808 TTATATTTTT
8292818 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
8292860 CAAAAAAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:8293959 original size:17 final size:17
Alignment explanation
Indices: 8293933--8293966 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8293923 AATTTAATTT
*
8293933 ATATATTTTAATTTTTA
1 ATATAATTTAATTTTTA
*
8293950 ATATAATTTAGTTTTTA
1 ATATAATTTAATTTTTA
8293967 TATTTTTATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (17 bp):
ATATAATTTAATTTTTA
Found at i:8294020 original size:17 final size:18
Alignment explanation
Indices: 8293981--8294021 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
8293971 TTTATAATAT
*
8293981 TTTTAATTAATTTAAACA
1 TTTTAATAAATTTAAACA
*
8293999 -GTTAATAAATTT-AACA
1 TTTTAATAAATTTAAACA
8294015 TTTTAAT
1 TTTTAAT
8294022 TAAAATGTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 3
0.76 0.12 0.12
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (18 bp):
TTTTAATAAATTTAAACA
Found at i:8295422 original size:22 final size:23
Alignment explanation
Indices: 8295379--8295425 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
8295369 AAAAATCTAT
* *
8295379 TTTTTATAAAATAATAAGTATTA
1 TTTTTATAAAATAACAAATATTA
*
8295402 TTTTTAT-AAATACCAAATATTA
1 TTTTTATAAAATAACAAATATTA
8295424 TT
1 TT
8295426 ATTGAGAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (23 bp):
TTTTTATAAAATAACAAATATTA
Found at i:8302073 original size:22 final size:21
Alignment explanation
Indices: 8302009--8302095 Score: 86
Period size: 21 Copynumber: 4.0 Consensus size: 21
8301999 GAATATATAG
* *
8302009 AATAATACATAATAAATTTGAA
1 AATAATATATGATAAATTT-AA
* * *
8302031 GAATGATACATGA-AAACTTAA
1 -AATAATATATGATAAATTTAA
8302052 AATAATTATATGATAAATTTAA
1 AATAA-TATATGATAAATTTAA
*
8302074 AATAATATGTGATAAATTTAA
1 AATAATATATGATAAATTTAA
8302095 A
1 A
8302096 CAACATTCAT
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
20 4 0.07
21 24 0.44
22 17 0.31
23 10 0.18
ACGTcount: A:0.55, C:0.03, G:0.08, T:0.33
Consensus pattern (21 bp):
AATAATATATGATAAATTTAA
Found at i:8303094 original size:20 final size:20
Alignment explanation
Indices: 8303061--8303099 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
8303051 CGAATCCCCC
* * *
8303061 TTTTTTTCTTATTTTCTCTA
1 TTTTTCTCTAATTTGCTCTA
8303081 TTTTTCTCTAATTTGCTCT
1 TTTTTCTCTAATTTGCTCT
8303100 CGATTTCTGC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.10, C:0.18, G:0.03, T:0.69
Consensus pattern (20 bp):
TTTTTCTCTAATTTGCTCTA
Found at i:8305644 original size:18 final size:20
Alignment explanation
Indices: 8305609--8305650 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
8305599 CCCATAATGA
*
8305609 TGAAGATTTTGATCATGACGT
1 TGAAGATTTTGA-CATGACCT
8305630 TGAAGATTTT-A-ATGACCT
1 TGAAGATTTTGACATGACCT
8305648 TGA
1 TGA
8305651 TCTTGGTGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 9 0.45
20 1 0.05
21 10 0.50
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (20 bp):
TGAAGATTTTGACATGACCT
Found at i:8312802 original size:3 final size:3
Alignment explanation
Indices: 8312794--8312820 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
8312784 TAAGAGACAT
8312794 AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG
8312821 CCAATTGATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:8334686 original size:18 final size:20
Alignment explanation
Indices: 8334655--8334694 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
8334645 AAACAGAAAA
8334655 TTTTAGCCTCAAAAATA-TT
1 TTTTAGCCTCAAAAATACTT
8334674 TTTTAGCCT-AAAAATACTT
1 TTTTAGCCTCAAAAATACTT
8334693 TT
1 TT
8334695 GAGAAGTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.35, C:0.15, G:0.05, T:0.45
Consensus pattern (20 bp):
TTTTAGCCTCAAAAATACTT
Found at i:8354812 original size:20 final size:19
Alignment explanation
Indices: 8354774--8354841 Score: 57
Period size: 19 Copynumber: 3.5 Consensus size: 19
8354764 CATAATTAGA
* * *
8354774 AAAATGATTAAATCTAGTT
1 AAAATGTTTCAATCAAGTT
*
8354793 AAAATGGTTTCAATTAAGTT
1 AAAAT-GTTTCAATCAAGTT
*
8354813 AAACAT-TTTCAATCATGTT
1 AAA-ATGTTTCAATCAAGTT
8354832 AAAATTGTTT
1 AAAA-TGTTT
8354842 TTTAAACAAG
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
18 1 0.03
19 20 0.51
20 16 0.41
21 2 0.05
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.41
Consensus pattern (19 bp):
AAAATGTTTCAATCAAGTT
Found at i:8356583 original size:25 final size:25
Alignment explanation
Indices: 8356555--8356619 Score: 103
Period size: 25 Copynumber: 2.6 Consensus size: 25
8356545 TTAGCTCTCA
8356555 TGAGCTTCCTGTTAAATGATTCTTG
1 TGAGCTTCCTGTTAAATGATTCTTG
* *
8356580 TGAGCTTCCCGTTAAATGGTTCTTG
1 TGAGCTTCCTGTTAAATGATTCTTG
*
8356605 TTAGCTTCCTGTTAA
1 TGAGCTTCCTGTTAA
8356620 TAGCTTTTCG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.18, C:0.18, G:0.20, T:0.43
Consensus pattern (25 bp):
TGAGCTTCCTGTTAAATGATTCTTG
Found at i:8356724 original size:25 final size:25
Alignment explanation
Indices: 8356656--8356749 Score: 75
Period size: 25 Copynumber: 3.8 Consensus size: 25
8356646 AGGCTCTTTT
** *
8356656 ATGAGCTTCCCGATAT-TGGCTGGC
1 ATGAGCTTCCCCTTATATGGCTGAC
** * * *
8356680 ATGAGCTTTTCGTTACATGGCTCAC
1 ATGAGCTTCCCCTTATATGGCTGAC
8356705 ATGAGCTTCCCCTTATATGGCTTGA-
1 ATGAGCTTCCCCTTATATGGC-TGAC
*
8356730 AAGAGCTTCCCCTTTATATG
1 ATGAGCTTCCCC-TTATATG
8356750 CTTGTATGAG
Statistics
Matches: 55, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
24 12 0.22
25 34 0.62
26 9 0.16
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.34
Consensus pattern (25 bp):
ATGAGCTTCCCCTTATATGGCTGAC
Found at i:8356765 original size:26 final size:25
Alignment explanation
Indices: 8356705--8356766 Score: 81
Period size: 25 Copynumber: 2.4 Consensus size: 25
8356695 CATGGCTCAC
8356705 ATGAGCTTCCCCTTATATGGCTTGA
1 ATGAGCTTCCCCTTATATGGCTTGA
* *
8356730 AAGAGCTTCCCCTTTATAT-GCTTGT
1 ATGAGCTTCCCC-TTATATGGCTTGA
8356755 ATGAGCATTCCC
1 ATGAGC-TTCCC
8356767 GAATATGAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 21 0.66
26 11 0.34
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.35
Consensus pattern (25 bp):
ATGAGCTTCCCCTTATATGGCTTGA
Found at i:8357545 original size:125 final size:126
Alignment explanation
Indices: 8357319--8357571 Score: 454
Period size: 125 Copynumber: 2.0 Consensus size: 126
8357309 GAGTTAGACA
8357319 TATTTTGATATGTATATGTATGTGTGGCTTAATACGTTTGTTGTGTTTAACGTGGTTGAGTAATG
1 TATTTTGATATGTATATGTATGTGTGGCTTAATA---TTGTTGTGTTTAACGTGGTTGAGTAATG
8357384 GATAATTTATGAAAATGATAATGTATTATTTGAGATAATATGATTGGAGAAATATGCATATAAT
63 GATAATTTATGAAAATGATAATGTATTATTTGAGATAATATGATTGGAGAAATATGCATATAAT
*
8357448 TATTTTGATATGTATATGTATGTGTGGCTTAATA-TGTTGTGTTTAATGTGGTTGAGTAATGGAT
1 TATTTTGATATGTATATGTATGTGTGGCTTAATATTGTTGTGTTTAACGTGGTTGAGTAATGGAT
*
8357512 AATTTATGAATATGATAATGTATTATTTGAGATAATATGATTGGAGAAATATGCATATAA
66 AATTTATGAAAATGATAATGTATTATTTGAGATAATATGATTGGAGAAATATGCATATAA
8357572 GTTTATATGG
Statistics
Matches: 122, Mismatches: 2, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
125 88 0.72
129 34 0.28
ACGTcount: A:0.33, C:0.02, G:0.22, T:0.43
Consensus pattern (126 bp):
TATTTTGATATGTATATGTATGTGTGGCTTAATATTGTTGTGTTTAACGTGGTTGAGTAATGGAT
AATTTATGAAAATGATAATGTATTATTTGAGATAATATGATTGGAGAAATATGCATATAAT
Found at i:8358041 original size:30 final size:30
Alignment explanation
Indices: 8358003--8358061 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
8357993 TTGATTTTTC
*
8358003 AATAATAATTAATACCAAGT-AAAATATAA
1 AATAATAATTAATACCAAATAAAAATATAA
8358032 AATATATAATTAATACCAAATAAAAATATA
1 AATA-ATAATTAATACCAAATAAAAATATA
8358062 GTATTACATT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 4 0.15
30 15 0.56
31 8 0.30
ACGTcount: A:0.63, C:0.07, G:0.02, T:0.29
Consensus pattern (30 bp):
AATAATAATTAATACCAAATAAAAATATAA
Found at i:8363432 original size:59 final size:59
Alignment explanation
Indices: 8363340--8363453 Score: 210
Period size: 59 Copynumber: 1.9 Consensus size: 59
8363330 TTTTTCGAAT
* *
8363340 CAAATCGAGTTTTGCTCTCTCCTACCCAACCCATAAATAATAGGGTAACGCGCTTAAAC
1 CAAATCAAGTTTTGCTCACTCCTACCCAACCCATAAATAATAGGGTAACGCGCTTAAAC
8363399 CAAATCAAGTTTTGCTCACTCCTACCCAACCCATAAATAATAGGGTAACGCGCTT
1 CAAATCAAGTTTTGCTCACTCCTACCCAACCCATAAATAATAGGGTAACGCGCTT
8363454 CAACACACTC
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
59 53 1.00
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.25
Consensus pattern (59 bp):
CAAATCAAGTTTTGCTCACTCCTACCCAACCCATAAATAATAGGGTAACGCGCTTAAAC
Found at i:8371274 original size:5 final size:5
Alignment explanation
Indices: 8371264--8371299 Score: 54
Period size: 5 Copynumber: 6.8 Consensus size: 5
8371254 CTAATTAAGT
8371264 TTTTA TTTTA TTTTA TTTTA TTTTTA TTTTAA TTTT
1 TTTTA TTTTA TTTTA TTTTA -TTTTA TTTT-A TTTT
8371300 GGGTTTCTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
5 19 0.66
6 10 0.34
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:8371277 original size:11 final size:11
Alignment explanation
Indices: 8371263--8371299 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
8371253 ACTAATTAAG
8371263 TTTTTATTTTA
1 TTTTTATTTTA
8371274 -TTTTATTTTA
1 TTTTTATTTTA
8371284 TTTTTATTTTA
1 TTTTTATTTTA
*
8371295 ATTTT
1 TTTTT
8371300 GGGTTTCTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
10 10 0.42
11 14 0.58
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (11 bp):
TTTTTATTTTA
Found at i:8377236 original size:7 final size:7
Alignment explanation
Indices: 8377224--8377253 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
8377214 ATTTTTTATT
8377224 ATATTAA
1 ATATTAA
8377231 ATATTAA
1 ATATTAA
8377238 ATATTAA
1 ATATTAA
*
8377245 ATATAAA
1 ATATTAA
8377252 AT
1 AT
8377254 TTTATATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (7 bp):
ATATTAA
Found at i:8377338 original size:6 final size:6
Alignment explanation
Indices: 8377327--8377352 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
8377317 TTAGTAATTT
8377327 AATATA AATATA AATATA AATATA AA
1 AATATA AATATA AATATA AATATA AA
8377353 ATTATTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (6 bp):
AATATA
Found at i:8378654 original size:18 final size:19
Alignment explanation
Indices: 8378608--8378646 Score: 50
Period size: 16 Copynumber: 2.3 Consensus size: 19
8378598 AATAAAAATC
8378608 TAATAAA-ATAA--TTTAA
1 TAATAAATATAATGTTTAA
8378624 TAATAAATATAATGTTTAA
1 TAATAAATATAATGTTTAA
8378643 -AATA
1 TAATA
8378647 CAATTAATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
16 7 0.35
17 4 0.20
18 4 0.20
19 5 0.25
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (19 bp):
TAATAAATATAATGTTTAA
Found at i:8383642 original size:28 final size:28
Alignment explanation
Indices: 8383581--8383643 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
8383571 GACTATTTTT
*
8383581 TTAAATCTTGAACTCAAAATTCTGAACC
1 TTAAATCTTGAACTCAAAATTATGAACC
**
8383609 CCAAATCTTGAA-TCTAAAATTATGAACC
1 TTAAATCTTGAACTC-AAAATTATGAACC
8383637 TTAAATC
1 TTAAATC
8383644 CTAAATCTTA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
27 2 0.07
28 27 0.93
ACGTcount: A:0.41, C:0.21, G:0.06, T:0.32
Consensus pattern (28 bp):
TTAAATCTTGAACTCAAAATTATGAACC
Found at i:8383649 original size:21 final size:20
Alignment explanation
Indices: 8383633--8383671 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
8383623 TAAAATTATG
*
8383633 AACCTTAAATCCTAAATCTTA
1 AACCTTAAACCCTAAAT-TTA
8383654 AACCTTAAACCCTAAATT
1 AACCTTAAACCCTAAATT
8383672 CTAACTCTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.44, C:0.26, G:0.00, T:0.31
Consensus pattern (20 bp):
AACCTTAAACCCTAAATTTA
Found at i:8383650 original size:28 final size:28
Alignment explanation
Indices: 8383596--8383651 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
8383586 TCTTGAACTC
* * *
8383596 AAAATTCTGAACCCCAAATCTTGAATCT
1 AAAATTATGAACCCCAAATCCTAAATCT
**
8383624 AAAATTATGAACCTTAAATCCTAAATCT
1 AAAATTATGAACCCCAAATCCTAAATCT
8383652 TAAACCTTAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.43, C:0.21, G:0.05, T:0.30
Consensus pattern (28 bp):
AAAATTATGAACCCCAAATCCTAAATCT
Found at i:8390579 original size:19 final size:19
Alignment explanation
Indices: 8390555--8390592 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
8390545 ATTCATATCC
8390555 AAAACCAATCATATTCAAT
1 AAAACCAATCATATTCAAT
8390574 AAAACCAATCATATTCAAT
1 AAAACCAATCATATTCAAT
8390593 CACATTGTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.21, G:0.00, T:0.26
Consensus pattern (19 bp):
AAAACCAATCATATTCAAT
Found at i:8392522 original size:16 final size:16
Alignment explanation
Indices: 8392487--8392521 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
8392477 GCTTTGGGAT
8392487 AAAAGTGTAATTTTTG
1 AAAAGTGTAATTTTTG
*
8392503 AAAAGT-TATTTTTTG
1 AAAAGTGTAATTTTTG
8392518 AAAA
1 AAAA
8392522 ATGGGGATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (16 bp):
AAAAGTGTAATTTTTG
Found at i:8393647 original size:16 final size:16
Alignment explanation
Indices: 8393607--8393648 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
8393597 AATGAGTTAA
*
8393607 ATTAAAGAA-GAACAT
1 ATTAAAGAATGAAAAT
**
8393622 ATTATGGAATGAAAAT
1 ATTAAAGAATGAAAAT
8393638 ATTAAAGAATG
1 ATTAAAGAATG
8393649 TATATGACAT
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
15 7 0.33
16 14 0.67
ACGTcount: A:0.55, C:0.02, G:0.17, T:0.26
Consensus pattern (16 bp):
ATTAAAGAATGAAAAT
Found at i:8398227 original size:236 final size:237
Alignment explanation
Indices: 8397796--8398273 Score: 796
Period size: 236 Copynumber: 2.0 Consensus size: 237
8397786 CTTTTGCACT
*
8397796 TTATACAATTTGGTCCTTACTAACAATTAAACATGAAACCGATAAAATTTTCTTGTCAAAATTTT
1 TTATACAATTTGGTCCTTACTAACAATTAAACATGAAACCGATAAAATTTTCTTATCAAAATTTT
* * *
8397861 CATACGTCTTTCCTATTATAATTCATACCATAAAATAATATTAAAATAATTTTTCTTTATGACAC
66 CATACGTCTTTCCTATTATAATGCAGACAATAAAATAATATTAAAATAATTTTTCTTTATGACAC
* * * *
8397926 AGATTTTTGATCTCGAAACTACTATTCCAATTTCACTGAAAATGGGCTATTACATCACTTGTCTC
131 AGATTTGTGATCTCGAAACCAATATTCCAATTTCACTGAAAATGGGCTATTACATCACCTGTCTC
8397991 TCGTGATTAAAAAAAATAGATTTTTCTTAATGGGTTGATGA-
196 TCGTGATTAAAAAAAATAGATTTTTCTTAATGGGTTGATGAG
* * * *
8398032 TTATGCAATTTGGTCTTTACTAACAATTAAACATGAAATCGGTAAAATTTTCTTATCAAAATTTT
1 TTATACAATTTGGTCCTTACTAACAATTAAACATGAAACCGATAAAATTTTCTTATCAAAATTTT
*
8398097 CATACGTCTTTCCTATTATAATGCAGACAATAAAATAATATTAAAATAATTTTTCTTTATGACTC
66 CATACGTCTTTCCTATTATAATGCAGACAATAAAATAATATTAAAATAATTTTTCTTTATGACAC
* *
8398162 AGATTTGTGATCTCGAAACCAATATTCCAATTTCACTGAAAATGGGCTGTTACGTCACCTGTCTC
131 AGATTTGTGATCTCGAAACCAATATTCCAATTTCACTGAAAATGGGCTATTACATCACCTGTCTC
**
8398227 TCGTGATTAAAAAAAATATTTTTTTCTTAATGGGTTGATGAG
196 TCGTGATTAAAAAAAATAGATTTTTCTTAATGGGTTGATGAG
8398269 TTATA
1 TTATA
8398274 TTACCTCATA
Statistics
Matches: 223, Mismatches: 18, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
236 219 0.98
237 4 0.02
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.39
Consensus pattern (237 bp):
TTATACAATTTGGTCCTTACTAACAATTAAACATGAAACCGATAAAATTTTCTTATCAAAATTTT
CATACGTCTTTCCTATTATAATGCAGACAATAAAATAATATTAAAATAATTTTTCTTTATGACAC
AGATTTGTGATCTCGAAACCAATATTCCAATTTCACTGAAAATGGGCTATTACATCACCTGTCTC
TCGTGATTAAAAAAAATAGATTTTTCTTAATGGGTTGATGAG
Done.