Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 28 of 222
Found at i:8402366 original size:22 final size:22
Alignment explanation
Indices: 8402341--8402387 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
8402331 CAGAGTTACA
*
8402341 TAATTTACATTTAAAAAAA-TAT
1 TAATTTAC-TATAAAAAAATTAT
8402363 TAA-TTACTATAAAAAAATTAT
1 TAATTTACTATAAAAAAATTAT
8402384 TAAT
1 TAAT
8402388 ATGATAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
20 9 0.41
21 10 0.45
22 3 0.14
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.40
Consensus pattern (22 bp):
TAATTTACTATAAAAAAATTAT
Found at i:8402980 original size:14 final size:15
Alignment explanation
Indices: 8402961--8402993 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8402951 TAAGTAAGAA
8402961 ATAATATA-AAATTT
1 ATAATATATAAATTT
*
8402975 ATAATATATAACTTT
1 ATAATATATAAATTT
8402990 ATAA
1 ATAA
8402994 AAAAGTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (15 bp):
ATAATATATAAATTT
Found at i:8405714 original size:11 final size:11
Alignment explanation
Indices: 8405698--8405730 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
8405688 TTAACCCTCA
8405698 AAAAAATAATT
1 AAAAAATAATT
8405709 AAAAAAT-ATT
1 AAAAAATAATT
*
8405719 ATAAAATAATT
1 AAAAAATAATT
8405730 A
1 A
8405731 CGAGCTAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (11 bp):
AAAAAATAATT
Found at i:8417594 original size:18 final size:17
Alignment explanation
Indices: 8417550--8417595 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
8417540 TAAAATTTTT
*
8417550 TTTATATTTTTTTAAAA
1 TTTAAATTTTTTTAAAA
* *
8417567 TTTGATTTTTTTTAATAA
1 TTTAAATTTTTTTAA-AA
8417585 TTTAAATTTTT
1 TTTAAATTTTT
8417596 GTTATTGAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
17 12 0.52
18 11 0.48
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (17 bp):
TTTAAATTTTTTTAAAA
Found at i:8419163 original size:8 final size:9
Alignment explanation
Indices: 8419146--8419170 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
8419136 ATAATAATAA
8419146 TAATTTTTT
1 TAATTTTTT
8419155 TAATTTTTT
1 TAATTTTTT
8419164 TAATTTT
1 TAATTTT
8419171 AAAATACTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (9 bp):
TAATTTTTT
Found at i:8419202 original size:21 final size:21
Alignment explanation
Indices: 8419158--8419202 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
8419148 ATTTTTTTAA
*
8419158 TTTTTTTAATTTTAAAATACT
1 TTTTTTTAATTTTAAAAAACT
8419179 TTTTTTTAATTTTAAAAAA-T
1 TTTTTTTAATTTTAAAAAACT
8419199 TTTT
1 TTTT
8419203 AAATTTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (21 bp):
TTTTTTTAATTTTAAAAAACT
Found at i:8419236 original size:9 final size:9
Alignment explanation
Indices: 8419222--8419263 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
8419212 TAAAAAATAC
8419222 TTTTTAAAT
1 TTTTTAAAT
8419231 TTTTTAAA-
1 TTTTTAAAT
*
8419239 TTTTAAAAT
1 TTTTTAAAT
*
8419248 GTTTTTAAAA
1 -TTTTTAAAT
8419258 TTTTTA
1 TTTTTA
8419264 TTTTAATTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
8 7 0.25
9 14 0.50
10 7 0.25
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (9 bp):
TTTTTAAAT
Found at i:8419255 original size:11 final size:10
Alignment explanation
Indices: 8419188--8419262 Score: 50
Period size: 10 Copynumber: 7.4 Consensus size: 10
8419178 TTTTTTTTAA
* *
8419188 TTTTAAAAAA
1 TTTTTAAAAT
*
8419198 TTTTTAAATT
1 TTTTTAAAAT
8419208 TTTTTAAAAAAT
1 TTTTT--AAAAT
8419220 ACTTTTT-AAAT
1 --TTTTTAAAAT
8419231 TTTTT-AAA-
1 TTTTTAAAAT
8419239 -TTTTAAAAT
1 TTTTTAAAAT
8419248 GTTTTTAAAAT
1 -TTTTTAAAAT
8419259 TTTT
1 TTTT
8419263 ATTTTAATTT
Statistics
Matches: 53, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
7 4 0.08
8 3 0.06
9 8 0.15
10 16 0.30
11 13 0.25
12 4 0.08
14 5 0.09
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.57
Consensus pattern (10 bp):
TTTTTAAAAT
Found at i:8420245 original size:5 final size:5
Alignment explanation
Indices: 8420235--8420261 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
8420225 TGTTAAATAT
8420235 TAAAA TAAAA TAAAA TAAAA TAAAA TA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TA
8420262 TTTTTAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
TAAAA
Found at i:8426737 original size:13 final size:13
Alignment explanation
Indices: 8426719--8426745 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8426709 AAACACACAC
8426719 AAAAAAAGAAAAA
1 AAAAAAAGAAAAA
8426732 AAAAAAAGAAAAA
1 AAAAAAAGAAAAA
8426745 A
1 A
8426746 GTAGAAGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (13 bp):
AAAAAAAGAAAAA
Found at i:8428052 original size:221 final size:222
Alignment explanation
Indices: 8427778--8428312 Score: 637
Period size: 221 Copynumber: 2.4 Consensus size: 222
8427768 GGAAAAGAGA
* * * *
8427778 AGAATAAATAAAAATAGCTTGCCAACTGAATTTT-ACAATTTATTGATCAGGTTCATGGTTCAGA
1 AGAATAAATGAACATAGCTTGCTAACTGAATTTTAACATTTTATTGATCAGGTTCATGGTTCAGA
* *
8427842 GTACT-ACATCAATGCTTTAT-TGGTTAG-TCCTTATTGAATTTAACAGCTGTTATGTGTTGATG
66 GT-CTGACATCAATGCTTTATGT-GTT-GTTCCTTATTGAACTTAACAGCTGTTATGTGTTGATA
* * * *
8427904 CGAGAGAATGCATCCTTAAGATTACCTGA-CGGGAGA-GAGAATTAAGTTTAGGCAAAATGATAC
128 CGAGAGAATGAATCCTTAAGAATACCTGAGAGGGA-ATAAGAATTAAGTTTAGGCAAAATGATAC
*
8427967 CTGGATTGTATTACCAGGAAAAGAAAAAAAAT
192 CCGGATTGTATTACCAGGAAAA-AAAAAAAAT
* *
8427999 AGAATAAATGAACATAGCTTGCTAACCGAATTTTAACATTTTATAGA-CAGGTTCATGGTTCAGA
1 AGAATAAATGAACATAGCTTGCTAACTGAATTTTAACATTTTATTGATCAGGTTCATGGTTCAGA
* **
8428063 GTCTGACATCTATGCTTTATGTGTTGTTCCTTATTGAACTTGGCAGCTGTTATGTGTTGATACGA
66 GTCTGACATCAATGCTTTATGTGTTGTTCCTTATTGAACTTAACAGCTGTTATGTGTTGATACGA
* * **
8428128 GAGAGTGAATCCTTAATAATACCTGAGAGGGAATTAAGTTTTAAGTTTAGGCAAAATGATACCCG
131 GAGAATGAATCCTTAAGAATACCTGAGAGGGAA-TAAGAATTAAGTTTAGGCAAAATGATACCCG
** * *
8428193 GATTGTATTTTCAGGAAAAAACAAGAAT
195 GATTGTATTACCAGGAAAAAAAAAAAAT
* * *
8428221 A-AAT-AA-G--CATA-CTTACTGACTGAATTGTAACATTTTATTGATCAGGTTCATGGTTCAGA
1 AGAATAAATGAACATAGCTTGCTAACTGAATTTTAACATTTTATTGATCAGGTTCATGGTTCAGA
* ** * *
8428280 GTCAGACATTGATGCTTTATGTGTCGGTCCTTA
66 GTCTGACATCAATGCTTTATGTGTTGTTCCTTA
8428313 CTTTGCCACC
Statistics
Matches: 272, Mismatches: 34, Indels: 20
0.83 0.10 0.06
Matches are distributed among these distances:
216 25 0.09
217 49 0.18
219 1 0.00
220 5 0.02
221 126 0.46
222 23 0.08
223 43 0.16
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.33
Consensus pattern (222 bp):
AGAATAAATGAACATAGCTTGCTAACTGAATTTTAACATTTTATTGATCAGGTTCATGGTTCAGA
GTCTGACATCAATGCTTTATGTGTTGTTCCTTATTGAACTTAACAGCTGTTATGTGTTGATACGA
GAGAATGAATCCTTAAGAATACCTGAGAGGGAATAAGAATTAAGTTTAGGCAAAATGATACCCGG
ATTGTATTACCAGGAAAAAAAAAAAAT
Found at i:8434501 original size:23 final size:23
Alignment explanation
Indices: 8434475--8434519 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
8434465 TTTCTTACTA
8434475 TAGTAATTTTCAGGG-TATTACAG
1 TAGTAATTTTC-GGGATATTACAG
8434498 TAGTAATTTTCGGGATATTACA
1 TAGTAATTTTCGGGATATTACA
8434520 ATTTGCTGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 3 0.14
23 18 0.86
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (23 bp):
TAGTAATTTTCGGGATATTACAG
Found at i:8436430 original size:220 final size:217
Alignment explanation
Indices: 8436006--8436763 Score: 698
Period size: 220 Copynumber: 3.5 Consensus size: 217
8435996 ACCGATACAA
* * ** *
8436006 AAAGCATCGATGTC--TAACTTTGAACCATGAACCTGATCAATAAAATGTTACAATTCAGTCAGT
1 AAAGCATCGATGTCAGT-ACTTTGAACCATGAACCTGATCAATAAAATGTTAAAATTTAGTTGGC
* * * *
8436069 AAG-TATGCTTATTTATTC--TTGTTT-TTTTCGTGGAAATATAATCCGGGTATCATTTTGCCTA
65 AAGCTATG-TTATTTATTCTTTTTTTTCTTTTCCTGGTAATACAATCC-GGTATCATTTTGCCTA
* * *
8436130 AACTTAAAACTTAAT-TCCCTCCCC-GGTAATCTTAAGGATTCATTATCTCGTATCAACACATAA
128 AACTT--AA-TTACTCTCCC-CCCCAGGTAATCTTAAGGATGCATTCTCTCGTATCAACACATAA
** *
8436193 CAGCTGCCAAGTTCAGTAATGAACAACGCAT
189 CAGCTGTTAAATTCAGTAA-GAACAAC-CAT
**
8436224 AAAGCATATATGTCAG-ACTTTGAACCATGAACCTG-TCAATAAAATGTTAAAATTTAGTTGGCA
1 AAAGCATCGATGTCAGTACTTTGAACCATGAACCTGATCAATAAAATGTTAAAATTTAGTTGGCA
8436287 AGCTATGTTCATTTATTCTATTTTTTTCTTTTCCTGGTAATACAATCCAGGTATCATTTTGCCTA
66 AGCTATGTT-ATTTATTCT-TTTTTTTCTTTTCCTGGTAATACAATCC-GGTATCATTTTGCCTA
*
8436352 AACTTAATT-CTCTCCCCCGCCAGGTAATCTTAAGGATGCATTCTCTCGCATCAACACATAACAG
128 AACTTAATTACTCTCCCCC-CCAGGTAATCTTAAGGATGCATTCTCTCGTATCAACACATAACAG
8436416 CTGTTAAATTCAGTAAGAACTAACCGAT
192 CTGTTAAATTCAGTAAGAAC-AACC-AT
* * *
8436444 AAAGCATCGATGT-AGTACTTTGAACCATGAACCTAATCAATAAATTG-TAAAATTTAGTTGACA
1 AAAGCATCGATGTCAGTACTTTGAACCATGAACCTGATCAATAAAATGTTAAAATTTAGTTGGCA
* * *
8436507 AGCTATGTTTATTTATTC----TTCTCTTTTCCCT-GTCAATACAATTCGAGTACCATTTTGCCT
66 AGCTATG-TTATTTATTCTTTTTTTTCTTTT-CCTGGT-AATACAATCCG-GTATCATTTTGCCT
* * ** * *
8436567 AAACCTT-ATTGC-CT------CAGGTAATCTCAACAATGCACTCTCTCGTATCAACACATAACT
127 AAA-CTTAATTACTCTCCCCCCCAGGTAATCTTAAGGATGCATTCTCTCGTATCAACACATAACA
* *
8436624 GCTGTTAAAATCAGTAAGGACCAAGATCAATACAT
191 GCTGTTAAATTCAGTAA-G----A-A-CAA-CCAT
* * *
8436659 AAAGCACCGATGTC-GTACTTTGAACCATGAACTTGATCAATAAATTGTT-AAATTTAGTTGGCA
1 AAAGCATCGATGTCAGTACTTTGAACCATGAACCTGATCAATAAAATGTTAAAATTTAGTTGGCA
*
8436722 AGCTACGTTTATTTATTCTTTTGTTTTC----CCTGGTAATACAAT
66 AGCTATG-TTATTTATTCTTTT-TTTTCTTTTCCTGGTAATACAAT
8436764 TTGAATATCG
Statistics
Matches: 462, Mismatches: 41, Indels: 77
0.80 0.07 0.13
Matches are distributed among these distances:
209 53 0.11
210 1 0.00
214 1 0.00
215 100 0.22
216 38 0.08
217 31 0.07
218 46 0.10
219 15 0.03
220 122 0.26
221 17 0.04
222 38 0.08
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.34
Consensus pattern (217 bp):
AAAGCATCGATGTCAGTACTTTGAACCATGAACCTGATCAATAAAATGTTAAAATTTAGTTGGCA
AGCTATGTTATTTATTCTTTTTTTTCTTTTCCTGGTAATACAATCCGGTATCATTTTGCCTAAAC
TTAATTACTCTCCCCCCCAGGTAATCTTAAGGATGCATTCTCTCGTATCAACACATAACAGCTGT
TAAATTCAGTAAGAACAACCAT
Found at i:8436780 original size:215 final size:209
Alignment explanation
Indices: 8436022--8436946 Score: 631
Period size: 215 Copynumber: 4.3 Consensus size: 209
8436012 TCGATGTCTA
* * ** * *
8436022 ACTTTGAACCATGAACCTGATCAATAAAATGTTACAATTCAGTCAGTAAG-TATGCTTATTTATT
1 ACTTTGAACCATGAACCTGATCAATAAATTGTTA-AATTTAGTTGGCAAGCTATGTTTATTTATT
* * * * * * *
8436086 CTTGTTTTTTTCGTGGAAATATAATCCGGGTATCATTTTGCCTAAACTTAAAACTTAATTCCCTC
65 CTT-TTTTTTCCCTGGTAATACAATTCGAGTATCATTTTG-C----C-T-AAACTTAATTCTCT-
* * ** * * * * ** **
8436151 CCCGGTAATCTTAAGGATTCATTATCTCGTATCAACACATAACAGCTGCCAAGTTCAGTAATG-A
121 CCAGGTAATCTCAACAATGCACTCTCTCGCATCAACACATAACAGCTGTTAAAATCAGTAA-GAA
* ***
8436215 A-CAACGCATAAAGCATATATGTCAG-
185 ATAAACG-ATAAAGCACCGATGT-AGT
* *
8436240 ACTTTGAACCATGAACCTG-TCAATAAAATGTTAAAATTTAGTTGGCAAGCTATGTTCATTTATT
1 ACTTTGAACCATGAACCTGATCAATAAATTGTT-AAATTTAGTTGGCAAGCTATGTTTATTTATT
*
8436304 CTATTTTTTTCTTTTCCTGGTAATACAA-TCCAGGTATCATTTTGCCTAAACTTAATTCTCTCCC
65 CT-TTTTTTTC----CCTGGTAATACAATTCGA-GTATCATTTTGCCTAAACTTAATTCTCT---
* ** * *
8436368 CCGCCAGGTAATCTTAAGGATGCATTCTCTCGCATCAACACATAACAGCTGTTAAATTCAGTAAG
121 ---CCAGGTAATCTCAACAATGCACTCTCTCGCATCAACACATAACAGCTGTTAAAATCAGTAAG
* * *
8436433 AACTAACCGATAAAGCATCGATGTAGT
183 AAATAAACGATAAAGCACCGATGTAGT
* * *
8436460 ACTTTGAACCATGAACCTAATCAATAAATTGTAAAATTTAGTTGACAAGCTATGTTTATTTATTC
1 ACTTTGAACCATGAACCTGATCAATAAATTGTTAAATTTAGTTGGCAAGCTATGTTTATTTATTC
* *
8436525 TTCTCTTTTCCCT-GTCAATACAATTCGAGTACCATTTTGCCTAAACCTT-ATTGC-CT-CAGGT
66 TT-TTTTTTCCCTGGT-AATACAATTCGAGTATCATTTTGCCTAAA-CTTAATT-CTCTCCAGGT
* *
8436586 AATCTCAACAATGCACTCTCTCGTATCAACACATAACTGCTGTTAAAATCAGTAAGGACCAAGAT
127 AATCTCAACAATGCACTCTCTCGCATCAACACATAACAGCTGTTAAAATCAGTAA-G---AA-AT
*
8436651 CAATAC-ATAAAGCACCGATGTCGT
187 -AA-ACGATAAAGCACCGATGTAGT
* *
8436675 ACTTTGAACCATGAACTTGATCAATAAATTGTTAAATTTAGTTGGCAAGCTACGTTTATTTATTC
1 ACTTTGAACCATGAACCTGATCAATAAATTGTTAAATTTAGTTGGCAAGCTATGTTTATTTATTC
* * * * * * *
8436740 TTTTGTTTTCCCTGGTAATACAATTTGAATATCGTTTTGCC-AGAACCTATTTCCCTCCCACGTA
66 TTTT-TTTTCCCTGGTAATACAATTCGAGTATCATTTTGCCTA-AACTTAATTCTCT-CCAGGTA
* ** * * * * * * * * * *
8436804 GTCTCGAGTAA-GAACTCTCTGGTATCAACACATAGCAGTTGTCAAAATGAGTAGGACCA-ACAC
128 ATCTC-AACAATGCACTCTCTCGCATCAACACATAACAGCTGTTAAAATCAGTAAGA-AATAAAC
* * * *
8436867 G-TAAAGCATCAATGTTGG
191 GATAAAGCACCGATGTAGT
* * * * * *
8436885 ACTCTAAACCAAGAACCTGATC-ATCAATTTGATAAATTTAGTTGGCAAGCTATATTTATTTA
1 ACTTTGAACCATGAACCTGATCAAT-AAATTGTTAAATTTAGTTGGCAAGCTATGTTTATTTA
8436947 CCCTTTTCTC
Statistics
Matches: 583, Mismatches: 84, Indels: 88
0.77 0.11 0.12
Matches are distributed among these distances:
209 55 0.09
210 67 0.11
211 1 0.00
213 4 0.01
214 6 0.01
215 130 0.22
216 36 0.06
217 76 0.13
218 43 0.07
219 5 0.01
220 123 0.21
221 16 0.03
222 21 0.04
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (209 bp):
ACTTTGAACCATGAACCTGATCAATAAATTGTTAAATTTAGTTGGCAAGCTATGTTTATTTATTC
TTTTTTTTCCCTGGTAATACAATTCGAGTATCATTTTGCCTAAACTTAATTCTCTCCAGGTAATC
TCAACAATGCACTCTCTCGCATCAACACATAACAGCTGTTAAAATCAGTAAGAAATAAACGATAA
AGCACCGATGTAGT
Found at i:8437552 original size:6 final size:6
Alignment explanation
Indices: 8437541--8437578 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
8437531 TCCTCTTCCA
*
8437541 TTTTCT TCTTCT TTTTCT TTTTC- TTTTCT TTTT-T TTTT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTT
8437579 GTGTTTGGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
5 10 0.34
6 19 0.66
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTCT
Found at i:8438657 original size:40 final size:40
Alignment explanation
Indices: 8438558--8438676 Score: 159
Period size: 39 Copynumber: 3.0 Consensus size: 40
8438548 TACACAAGTG
* **
8438558 ACCCGTGCATCGTATAAAAATACAAACTAATAATTATATA
1 ACCCATGCATCGTATAAAAATACAAACTAGCAATTATATA
* *
8438598 A-CCATGCATCGCATAAAAATACAAATTAGCAATTATATA
1 ACCCATGCATCGTATAAAAATACAAACTAGCAATTATATA
* * *
8438637 ACCCCTGCATCGTACAAAAATACAAACTAGCAACTATATA
1 ACCCATGCATCGTATAAAAATACAAACTAGCAATTATATA
8438677 CCTTTTCACT
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
39 34 0.50
40 34 0.50
ACGTcount: A:0.47, C:0.21, G:0.08, T:0.24
Consensus pattern (40 bp):
ACCCATGCATCGTATAAAAATACAAACTAGCAATTATATA
Found at i:8457005 original size:31 final size:31
Alignment explanation
Indices: 8456970--8457032 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 31
8456960 TGCATGCAAC
*
8456970 TGAATCAAAGTTAAAA-TTTCATGTGTACAAT
1 TGAATCAAA-ATAAAAGTTTCATGTGTACAAT
* *
8457001 TGAATCAAAATAAAAGTTTTATGTGTATAAT
1 TGAATCAAAATAAAAGTTTCATGTGTACAAT
8457032 T
1 T
8457033 ACACCATATC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 5 0.18
31 23 0.82
ACGTcount: A:0.43, C:0.06, G:0.13, T:0.38
Consensus pattern (31 bp):
TGAATCAAAATAAAAGTTTCATGTGTACAAT
Found at i:8459273 original size:6 final size:6
Alignment explanation
Indices: 8459262--8459286 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
8459252 CTAATGTAAT
8459262 GATGAA GATGAA GATGAA GATGAA G
1 GATGAA GATGAA GATGAA GATGAA G
8459287 TACATTAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.36, T:0.16
Consensus pattern (6 bp):
GATGAA
Found at i:8460946 original size:19 final size:20
Alignment explanation
Indices: 8460922--8460959 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8460912 CTGCAATGTC
*
8460922 ATACAT-AAATTTTGATTTT
1 ATACATGAAATTCTGATTTT
8460941 ATACATGAAATTCTGATTT
1 ATACATGAAATTCTGATTT
8460960 GATTCCATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.37, C:0.08, G:0.08, T:0.47
Consensus pattern (20 bp):
ATACATGAAATTCTGATTTT
Found at i:8467573 original size:20 final size:20
Alignment explanation
Indices: 8467545--8467584 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
8467535 TTAAATAAAT
*
8467545 TTTACGTTAAAAATTTTTAA
1 TTTAAGTTAAAAATTTTTAA
**
8467565 TTTAAGTTAGCAATTTTTAA
1 TTTAAGTTAAAAATTTTTAA
8467585 GAGAGTTTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.05, G:0.07, T:0.50
Consensus pattern (20 bp):
TTTAAGTTAAAAATTTTTAA
Found at i:8467868 original size:16 final size:16
Alignment explanation
Indices: 8467847--8467877 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8467837 CATATTGCAG
8467847 CATATAAATTTGAAAC
1 CATATAAATTTGAAAC
*
8467863 CATATATATTTGAAA
1 CATATAAATTTGAAA
8467878 ACTTTTTCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.10, G:0.06, T:0.35
Consensus pattern (16 bp):
CATATAAATTTGAAAC
Found at i:8473780 original size:149 final size:149
Alignment explanation
Indices: 8473380--8473783 Score: 501
Period size: 152 Copynumber: 2.7 Consensus size: 149
8473370 TTTTTAATAT
* * * * * *
8473380 ATATATATTTTAAACATTAATTTTATTAT-AGATTCTTATTATATTTGTTAC-TTGTTGATACAA
1 ATATATATATTAAACATTAATATCATTATAAG-TTCTTATAATATCTGCT-CTTTGTTGATACAA
* * * * * *
8473443 TATCTAGAATTACCCATAGTCTCT-TCTCAATTCTTAAATAGGAGGACAATACCCATACCAATCG
64 TATATAGAACTATCCATAGTCTCTCT-TCAAATCTTAAATAAGAGGACAACACCCATACCAATCG
* *
8473507 AGTTAAGACTCAACCGGCTTAC
128 AGCTAAGACTCAACCAGCTTAC
* * *
8473529 ATATATATAGTAAACTTTAATATGATCATTATAAGTTCTTATCATATCTGCTCTTTGTTGATACA
1 ATATATATATTAAACATT-A-AT-ATCATTATAAGTTCTTATAATATCTGCTCTTTGTTGATACA
* * *
8473594 ATATATAGAACTATCCATAGTCTCTC-CCCAATCCTTAAATAAGAGGACAACATCCATACCAATC
63 ATATATAGAACTATCCATAGTCTCTCTTCAAAT-CTTAAATAAGAGGACAACACCCATACCAATC
*
8473658 GAGCTAAGACTCAACCAGTTTAC
127 GAGCTAAGACTCAACCAGCTTAC
* *
8473681 ATATATATATTAAACATTAATCTCATTATAAGTTCTCATAATATCTGCTCTTTGTTGATACAATA
1 ATATATATATTAAACATTAATATCATTATAAGTTCTTATAATATCTGCTCTTTGTTGATACAATA
*
8473746 TATAGAACTATCCACAGTCTCTCTTCAAATCTTAAATA
66 TATAGAACTATCCATAGTCTCTCTTCAAATCTTAAATA
8473784 GAAAGATAAT
Statistics
Matches: 219, Mismatches: 28, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
149 86 0.39
150 7 0.03
151 7 0.03
152 117 0.53
153 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.37
Consensus pattern (149 bp):
ATATATATATTAAACATTAATATCATTATAAGTTCTTATAATATCTGCTCTTTGTTGATACAATA
TATAGAACTATCCATAGTCTCTCTTCAAATCTTAAATAAGAGGACAACACCCATACCAATCGAGC
TAAGACTCAACCAGCTTAC
Found at i:8476259 original size:15 final size:15
Alignment explanation
Indices: 8476226--8476258 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8476216 TTTTTAGTAG
*
8476226 TTTTAAAAAATTTTA
1 TTTTAAAAAATTATA
8476241 TTTTAAAAAA-TATA
1 TTTTAAAAAATTATA
8476255 TTTT
1 TTTT
8476259 TTGAATTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
TTTTAAAAAATTATA
Found at i:8479572 original size:21 final size:21
Alignment explanation
Indices: 8479548--8479588 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8479538 CACCTATAGT
8479548 GGTATCGCGATATCAACCTTA
1 GGTATCGCGATATCAACCTTA
* *
8479569 GGTATCGTGATATCCACCTT
1 GGTATCGCGATATCAACCTT
8479589 CCGAGGGGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (21 bp):
GGTATCGCGATATCAACCTTA
Found at i:8482908 original size:30 final size:30
Alignment explanation
Indices: 8482874--8482933 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
8482864 TATTTTATAT
8482874 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
*
8482904 TTAATTTTGTTATTATTTTAGAGGCATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
8482934 CTTGTTAAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.25, C:0.03, G:0.15, T:0.57
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGGCATTTG
Found at i:8495084 original size:17 final size:17
Alignment explanation
Indices: 8495062--8495095 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
8495052 AGAAAAAGAA
8495062 AACCACGCAAATCATAT
1 AACCACGCAAATCATAT
8495079 AACCACGCAAATCATAT
1 AACCACGCAAATCATAT
8495096 CATCTTTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.29, G:0.06, T:0.18
Consensus pattern (17 bp):
AACCACGCAAATCATAT
Found at i:8497965 original size:26 final size:26
Alignment explanation
Indices: 8497936--8497987 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
8497926 CGGGTCTGAC
*
8497936 GATCGGGCTGGGTTAGGGGTGTTACA
1 GATCGGGCCGGGTTAGGGGTGTTACA
8497962 GATCGGGCCGGGTTAGGGGTGTTACA
1 GATCGGGCCGGGTTAGGGGTGTTACA
8497988 ATGTCTTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.15, C:0.13, G:0.46, T:0.25
Consensus pattern (26 bp):
GATCGGGCCGGGTTAGGGGTGTTACA
Found at i:8528498 original size:25 final size:25
Alignment explanation
Indices: 8528465--8528514 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
8528455 GGTGAAAAGA
8528465 CCAAATTGTAAAGAAAGCAAAACTT
1 CCAAATTGTAAAGAAAGCAAAACTT
*
8528490 CCAATTTGTAAAGAAAGCAAAACTT
1 CCAAATTGTAAAGAAAGCAAAACTT
8528515 TCTTTCTTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.50, C:0.16, G:0.12, T:0.22
Consensus pattern (25 bp):
CCAAATTGTAAAGAAAGCAAAACTT
Found at i:8529142 original size:23 final size:23
Alignment explanation
Indices: 8529101--8529145 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
8529091 TTTCTTACTG
*
8529101 TAGTAATTTTCAGGGTATTACAA
1 TAGTAATTTTCAGGATATTACAA
8529124 TAGTAATTTTC-GAGATATTACA
1 TAGTAATTTTCAG-GATATTACA
8529146 TTTTCTTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 1 0.05
23 19 0.95
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.40
Consensus pattern (23 bp):
TAGTAATTTTCAGGATATTACAA
Found at i:8532074 original size:87 final size:87
Alignment explanation
Indices: 8531971--8532234 Score: 456
Period size: 87 Copynumber: 3.0 Consensus size: 87
8531961 GGCTATAGAC
8531971 CTCTTACTTTCTGTCAATGTTAGGTTCTGACTTAGTTTCAAAATTGTCTTTAACTAAATGTTTGA
1 CTCTTACTTTCTGTCAATGTTAGGTTCTGACTTAGTTTCAAAATTGTCTTTAACTAAATGTTTGA
8532036 ACTATGTTTCAATACTTGAGCA
66 ACTATGTTTCAATACTTGAGCA
* * *
8532058 TTCTTACTTTCTGTCAATGTTAGGTTCTGACTTAGTTTCAAAATTGTCTTTCACTAAATGTTTAA
1 CTCTTACTTTCTGTCAATGTTAGGTTCTGACTTAGTTTCAAAATTGTCTTTAACTAAATGTTTGA
*
8532123 ACTGTGTTTCAATACTTGAGCA
66 ACTATGTTTCAATACTTGAGCA
* * *
8532145 CTCTTACTTTCCGTCAATGTTAGGTTCTGACTTAGCTTCAAAATTTTCTTTAACTAAATGTTTGA
1 CTCTTACTTTCTGTCAATGTTAGGTTCTGACTTAGTTTCAAAATTGTCTTTAACTAAATGTTTGA
*
8532210 ACTATGTTTCAATACTTGAGAA
66 ACTATGTTTCAATACTTGAGCA
8532232 CTC
1 CTC
8532235 CAAAAAGATT
Statistics
Matches: 165, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 165 1.00
ACGTcount: A:0.26, C:0.17, G:0.13, T:0.44
Consensus pattern (87 bp):
CTCTTACTTTCTGTCAATGTTAGGTTCTGACTTAGTTTCAAAATTGTCTTTAACTAAATGTTTGA
ACTATGTTTCAATACTTGAGCA
Found at i:8533595 original size:19 final size:19
Alignment explanation
Indices: 8533552--8533596 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
8533542 GAATTTTGTT
*
8533552 TTTACTTTTTTTAAAAATG
1 TTTACTTTTTTCAAAAATG
8533571 TCTTACTTTTTTCATAAAA-G
1 T-TTACTTTTTTCA-AAAATG
8533591 TTTACT
1 TTTACT
8533597 CATCCTTCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 6 0.26
20 13 0.57
21 4 0.17
ACGTcount: A:0.29, C:0.11, G:0.04, T:0.56
Consensus pattern (19 bp):
TTTACTTTTTTCAAAAATG
Found at i:8539292 original size:20 final size:20
Alignment explanation
Indices: 8539267--8539308 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
8539257 TTCGATCAAT
*
8539267 CCATCAAATAAGATCCCAAC
1 CCATCAAATAAGATCCAAAC
8539287 CCATCAAATAAGATCCAAAC
1 CCATCAAATAAGATCCAAAC
8539307 CC
1 CC
8539309 TAACAGCGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.45, C:0.36, G:0.05, T:0.14
Consensus pattern (20 bp):
CCATCAAATAAGATCCAAAC
Found at i:8544500 original size:43 final size:43
Alignment explanation
Indices: 8544437--8544630 Score: 280
Period size: 43 Copynumber: 4.5 Consensus size: 43
8544427 TGTCCCAGAC
* * **
8544437 ATGGTCTTACATGGGAATCTCGTATCGATGCCAATAGCCCAGCT
1 ATGGTCTTACA-CGAAATCTCAAATCGATGCCAATAGCCCAGCT
* *
8544481 ATGGTCTTACACGAAATCTCAAATCGATGGCAATAGCCTAGCT
1 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCT
* *
8544524 ATGGCCTTACACGAAATCTCAAATCGATGCCAATAGCCCAACT
1 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCT
* *
8544567 ATGGTCTTAAACGAAATCTCAAATCGATGCCAGTAGCCCAGCT
1 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCT
*
8544610 ATGGTCTTACTCGAAATCTCA
1 ATGGTCTTACACGAAATCTCA
8544631 CCTCGAAAGT
Statistics
Matches: 134, Mismatches: 16, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
43 123 0.92
44 11 0.08
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCT
Found at i:8544787 original size:31 final size:30
Alignment explanation
Indices: 8544751--8544857 Score: 144
Period size: 31 Copynumber: 3.5 Consensus size: 30
8544741 TGCTCAAATC
8544751 AATTCGGCAATATATATCCATAAACAATTCA
1 AATTCGGCAATATATAT-CATAAACAATTCA
*
8544782 AATTCGACAATATATATTCATAAACAATTCA
1 AATTCGGCAATATATA-TCATAAACAATTCA
* * *
8544813 AATTCGGCAATGTATAT-ATATACAAATCA
1 AATTCGGCAATATATATCATAAACAATTCA
*
8544842 AATTCGGCAATGTATA
1 AATTCGGCAATATATA
8544858 AAACATATAC
Statistics
Matches: 70, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
29 26 0.37
30 1 0.01
31 42 0.60
32 1 0.01
ACGTcount: A:0.45, C:0.16, G:0.08, T:0.31
Consensus pattern (30 bp):
AATTCGGCAATATATATCATAAACAATTCA
Found at i:8545847 original size:11 final size:11
Alignment explanation
Indices: 8545831--8545858 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
8545821 TCTAAATAGC
8545831 TCATTTATATA
1 TCATTTATATA
8545842 TCATTTATATA
1 TCATTTATATA
8545853 TCATTT
1 TCATTT
8545859 GTTCATTAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.32, C:0.11, G:0.00, T:0.57
Consensus pattern (11 bp):
TCATTTATATA
Found at i:8546901 original size:14 final size:14
Alignment explanation
Indices: 8546882--8546908 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8546872 CATAAAATTC
8546882 TTTTGCTTTTCCCA
1 TTTTGCTTTTCCCA
8546896 TTTTGCTTTTCCC
1 TTTTGCTTTTCCC
8546909 CTTTATATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.04, C:0.30, G:0.07, T:0.59
Consensus pattern (14 bp):
TTTTGCTTTTCCCA
Found at i:8552113 original size:26 final size:24
Alignment explanation
Indices: 8552067--8552139 Score: 67
Period size: 29 Copynumber: 2.8 Consensus size: 24
8552057 AGCATTATTA
*
8552067 TTTAAAAATAATATATTAATATGATTACT
1 TTTAAAAATAATA-A--AATAT-A-TAAT
8552096 TTTAAAAATAATAAAATATATAAT
1 TTTAAAAATAATAAAATATATAAT
8552120 TTTATTAAAATAA-AAAATAT
1 TTTA--AAAATAATAAAATAT
8552140 TTAAGTATAT
Statistics
Matches: 41, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
24 7 0.17
25 8 0.20
26 12 0.29
28 1 0.02
29 13 0.32
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.41
Consensus pattern (24 bp):
TTTAAAAATAATAAAATATATAAT
Found at i:8552155 original size:25 final size:26
Alignment explanation
Indices: 8552100--8552154 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 26
8552090 ATTACTTTTA
* *
8552100 AAAATAATAAAATATATAATTTTATT
1 AAAATAATAAAATATATAAGTATATT
*
8552126 AAAATAA-AAAATATTTAAGTATATAT
1 AAAATAATAAAATATATAAGTATAT-T
8552152 AAA
1 AAA
8552155 TTAGTTTCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (26 bp):
AAAATAATAAAATATATAAGTATATT
Found at i:8552723 original size:26 final size:26
Alignment explanation
Indices: 8552673--8552725 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
8552663 AATATTAAGA
*
8552673 TAAACAATATTTATCTTAATAATAAT
1 TAAACAATATTTATATTAATAATAAT
* * *
8552699 TAAATAATATTTATATTTATGATAAT
1 TAAACAATATTTATATTAATAATAAT
8552725 T
1 T
8552726 TATATATTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (26 bp):
TAAACAATATTTATATTAATAATAAT
Found at i:8553392 original size:20 final size:20
Alignment explanation
Indices: 8553369--8553437 Score: 57
Period size: 20 Copynumber: 3.3 Consensus size: 20
8553359 AAAAATAATT
*
8553369 ATAATTTAATAGAAATCGTG
1 ATAATTTAATAGAAATAGTG
* * *
8553389 ATAATTATACATTAAAAATAATT
1 ATAATT-TA-A-TAGAAATAGTG
* *
8553412 ATAGTTTAATAGAAATTGTG
1 ATAATTTAATAGAAATAGTG
8553432 ATAATT
1 ATAATT
8553438 ACACAGTTAA
Statistics
Matches: 36, Mismatches: 10, Indels: 6
0.69 0.19 0.12
Matches are distributed among these distances:
20 18 0.50
21 3 0.08
22 3 0.08
23 12 0.33
ACGTcount: A:0.48, C:0.03, G:0.10, T:0.39
Consensus pattern (20 bp):
ATAATTTAATAGAAATAGTG
Found at i:8553420 original size:43 final size:44
Alignment explanation
Indices: 8553332--8553463 Score: 189
Period size: 43 Copynumber: 3.0 Consensus size: 44
8553322 ATTAAAATAA
* *
8553332 AATAGAAGTTGTGATAATTATACATTTAAAAATAATTATAATTT
1 AATAGAAATTGTGATAATTATACAGTTAAAAATAATTATAATTT
* *
8553376 AATAGAAATCGTGATAATTATACA-TTAAAAATAATTATAGTTT
1 AATAGAAATTGTGATAATTATACAGTTAAAAATAATTATAATTT
*
8553419 AATAGAAATTGTGATAATTACACAGTTAAAAA-AATTCA-AATTT
1 AATAGAAATTGTGATAATTATACAGTTAAAAATAATT-ATAATTT
8553462 AA
1 AA
8553464 ATTAAAATTA
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
43 50 0.62
44 30 0.38
ACGTcount: A:0.50, C:0.05, G:0.09, T:0.36
Consensus pattern (44 bp):
AATAGAAATTGTGATAATTATACAGTTAAAAATAATTATAATTT
Found at i:8556464 original size:30 final size:30
Alignment explanation
Indices: 8556430--8556490 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
8556420 CACAAGCTAG
8556430 TGCATTTAAATATAGCCTTTTTCGAATTAA
1 TGCATTTAAATATAGCCTTTTTCGAATTAA
*
8556460 TGCATTTAAATATAGCCTTTTTTGAATTAA
1 TGCATTTAAATATAGCCTTTTTCGAATTAA
8556490 T
1 T
8556491 CACATGATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.33, C:0.11, G:0.10, T:0.46
Consensus pattern (30 bp):
TGCATTTAAATATAGCCTTTTTCGAATTAA
Found at i:8558032 original size:25 final size:25
Alignment explanation
Indices: 8558004--8558092 Score: 99
Period size: 25 Copynumber: 3.6 Consensus size: 25
8557994 TTCCAAGCCA
*
8558004 TATAACGGGAAGCTCATGTGAGTTG
1 TATAACGGGAAGCTCATGCGAGTTG
* * *
8558029 TATAACGGGAAGCTCTTGCCAGCTG
1 TATAACGGGAAGCTCATGCGAGTTG
* *
8558054 -AGTATCGGGAAGCTCATACGAGTTG
1 TA-TAACGGGAAGCTCATGCGAGTTG
*
8558079 TATAACAGGAAGCT
1 TATAACGGGAAGCT
8558093 TAAGAGAGCC
Statistics
Matches: 51, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
24 1 0.02
25 49 0.96
26 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (25 bp):
TATAACGGGAAGCTCATGCGAGTTG
Found at i:8558114 original size:25 final size:25
Alignment explanation
Indices: 8558086--8558193 Score: 94
Period size: 25 Copynumber: 4.3 Consensus size: 25
8558076 TTGTATAACA
*
8558086 GGAAGCTTAAGAGAGCC-ATTAATCG
1 GGAAGCTCAAGAGAGCCAATT-ATCG
*
8558111 GGAAGCTCATGAGAGCCAATTATCG
1 GGAAGCTCAAGAGAGCCAATTATCG
* * *
8558136 GGAAGCTCATGCGAGCCAAATATCG
1 GGAAGCTCAAGAGAGCCAATTATCG
* * * * *
8558161 AGATGCTCATA-AGAGCTAAATAACG
1 GGAAGCTCA-AGAGAGCCAATTATCG
8558186 GGAAGCTC
1 GGAAGCTC
8558194 GTGAGAGCTG
Statistics
Matches: 69, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
25 66 0.96
26 3 0.04
ACGTcount: A:0.35, C:0.19, G:0.27, T:0.19
Consensus pattern (25 bp):
GGAAGCTCAAGAGAGCCAATTATCG
Found at i:8558202 original size:25 final size:25
Alignment explanation
Indices: 8558107--8558201 Score: 118
Period size: 25 Copynumber: 3.8 Consensus size: 25
8558097 AGAGCCATTA
*
8558107 ATCGGGAAGCTCATGAGAGCCAATT
1 ATCGGGAAGCTCATGAGAGCCAAAT
*
8558132 ATCGGGAAGCTCATGCGAGCCAAAT
1 ATCGGGAAGCTCATGAGAGCCAAAT
* * * *
8558157 ATCGAGATGCTCATAAGAGCTAAAT
1 ATCGGGAAGCTCATGAGAGCCAAAT
* *
8558182 AACGGGAAGCTCGTGAGAGC
1 ATCGGGAAGCTCATGAGAGC
8558202 TGTGGTGTGT
Statistics
Matches: 58, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 58 1.00
ACGTcount: A:0.34, C:0.20, G:0.28, T:0.18
Consensus pattern (25 bp):
ATCGGGAAGCTCATGAGAGCCAAAT
Found at i:8580162 original size:4 final size:4
Alignment explanation
Indices: 8580155--8580196 Score: 84
Period size: 4 Copynumber: 10.5 Consensus size: 4
8580145 AGATATAGAT
8580155 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG AT
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG AT
8580197 GGTCATGCAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.24, T:0.26
Consensus pattern (4 bp):
ATAG
Found at i:8611248 original size:6 final size:6
Alignment explanation
Indices: 8611234--8611269 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
8611224 AGAAGAAGCA
*
8611234 TTTCGC TTTCTC TTTCTC TTTCTC TTTCTC TTTCTC
1 TTTCTC TTTCTC TTTCTC TTTCTC TTTCTC TTTCTC
8611270 ATTCCGATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.00, C:0.33, G:0.03, T:0.64
Consensus pattern (6 bp):
TTTCTC
Found at i:8619412 original size:18 final size:18
Alignment explanation
Indices: 8619389--8619425 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
8619379 TACACGAGTC
8619389 TAGCTATACATGCCATTA
1 TAGCTATACATGCCATTA
8619407 TAGCTATACATGCCATTA
1 TAGCTATACATGCCATTA
8619425 T
1 T
8619426 CCAACCGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.22, G:0.11, T:0.35
Consensus pattern (18 bp):
TAGCTATACATGCCATTA
Found at i:8631019 original size:24 final size:25
Alignment explanation
Indices: 8630993--8631043 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
8630983 AGCAAAAGAT
8630993 AAAGAAAA-ATAAAGAAAAAAAGTTA
1 AAAGAAAATA-AAAGAAAAAAAGTTA
*
8631018 AAAGAACATAAAAGAAAAAAA-TTA
1 AAAGAAAATAAAAGAAAAAAAGTTA
8631042 AA
1 AA
8631044 TTACTTAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 5 0.21
25 18 0.75
26 1 0.04
ACGTcount: A:0.76, C:0.02, G:0.10, T:0.12
Consensus pattern (25 bp):
AAAGAAAATAAAAGAAAAAAAGTTA
Found at i:8633395 original size:40 final size:41
Alignment explanation
Indices: 8633350--8633456 Score: 117
Period size: 41 Copynumber: 2.6 Consensus size: 41
8633340 TGGCGCTAAC
* *
8633350 GAAAAACG-CGCAATAGGTAAATCATTAGCGGCGTTTATGA
1 GAAAAACGTCGCAAAAGGTAAAGCATTAGCGGCGTTTATGA
* * * *
8633390 GAAAAATGTCGCAAAAGGTCAAGCATTGGTGGCGTTTATGA
1 GAAAAACGTCGCAAAAGGTAAAGCATTAGCGGCGTTTATGA
* * *
8633431 GAAAAAAGGCTGCAAAAGGTCAAGCA
1 GAAAAACGTC-GCAAAAGGTAAAGCA
8633457 CTAACGACGC
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
40 7 0.12
41 35 0.61
42 15 0.26
ACGTcount: A:0.39, C:0.14, G:0.27, T:0.20
Consensus pattern (41 bp):
GAAAAACGTCGCAAAAGGTAAAGCATTAGCGGCGTTTATGA
Found at i:8635007 original size:39 final size:39
Alignment explanation
Indices: 8634953--8635027 Score: 150
Period size: 39 Copynumber: 1.9 Consensus size: 39
8634943 CCTAGAGGTA
8634953 TTTAATGTTGCTACTTGTTCTTGGTTGATTCTTTAAGTG
1 TTTAATGTTGCTACTTGTTCTTGGTTGATTCTTTAAGTG
8634992 TTTAATGTTGCTACTTGTTCTTGGTTGATTCTTTAA
1 TTTAATGTTGCTACTTGTTCTTGGTTGATTCTTTAA
8635028 CAATAGAGGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.16, C:0.11, G:0.19, T:0.55
Consensus pattern (39 bp):
TTTAATGTTGCTACTTGTTCTTGGTTGATTCTTTAAGTG
Found at i:8635293 original size:30 final size:31
Alignment explanation
Indices: 8635229--8635293 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 31
8635219 AATAAATTTA
*
8635229 TTTTTTTTATTTTAAAATATTTTAAAATACT
1 TTTTTTTTATTTTAAAATATTTTAAAATAAT
** *
8635260 TTTTTTTTATTTT-TTAT-TTTTAAAATAAA
1 TTTTTTTTATTTTAAAATATTTTAAAATAAT
8635289 TTTTT
1 TTTTT
8635294 GGTGTTTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 15 0.50
30 2 0.07
31 13 0.43
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.68
Consensus pattern (31 bp):
TTTTTTTTATTTTAAAATATTTTAAAATAAT
Found at i:8637996 original size:35 final size:35
Alignment explanation
Indices: 8637929--8637996 Score: 86
Period size: 35 Copynumber: 1.9 Consensus size: 35
8637919 AATTGTGTTA
*
8637929 TTAATTTATTATTTTAAATTCTAAATTTAAATTCG
1 TTAATTTATTATTTTAAATTCTAAATTAAAATTCG
*
8637964 TTAATTT-TTATATTT-AATTTTAAAGTTAAAATT
1 TTAATTTATTAT-TTTAAATTCTAAA-TTAAAATT
8637997 TTATAGAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
34 12 0.41
35 17 0.59
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (35 bp):
TTAATTTATTATTTTAAATTCTAAATTAAAATTCG
Found at i:8638350 original size:13 final size:14
Alignment explanation
Indices: 8638307--8638359 Score: 63
Period size: 14 Copynumber: 3.9 Consensus size: 14
8638297 ACAAATTTAT
* *
8638307 AAATTAAAAGAGTA
1 AAATTTAAAGATTA
* *
8638321 TAATTAAAAGATTA
1 AAATTTAAAGATTA
8638335 AAATTTAAAG-TTA
1 AAATTTAAAGATTA
8638348 AAATTTAAAGAT
1 AAATTTAAAGAT
8638360 GATAATCATA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
13 13 0.38
14 21 0.62
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.32
Consensus pattern (14 bp):
AAATTTAAAGATTA
Found at i:8638424 original size:9 final size:9
Alignment explanation
Indices: 8638410--8638543 Score: 109
Period size: 9 Copynumber: 15.3 Consensus size: 9
8638400 AACTTTGGAT
*
8638410 CATAACGTA
1 CATAACTTA
8638419 CATAACTTA
1 CATAACTTA
8638428 CATAACTTA
1 CATAACTTA
*
8638437 CATGA--TA
1 CATAACTTA
*
8638444 CATAA-ATA
1 CATAACTTA
* * *
8638452 TATATCATA
1 CATAACTTA
8638461 TCATAACTTA
1 -CATAACTTA
*
8638471 CATCACTTA
1 CATAACTTA
8638480 CATAACTTA
1 CATAACTTA
8638489 CATAA-TT-
1 CATAACTTA
*
8638496 CATAA-ATA
1 CATAACTTA
* * *
8638504 TATATCATA
1 CATAACTTA
8638513 TCATAACTTA
1 -CATAACTTA
8638523 CATAACTTA
1 CATAACTTA
8638532 CATAACTTA
1 CATAACTTA
8638541 CAT
1 CAT
8638544 TATACATAAA
Statistics
Matches: 103, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
7 12 0.12
8 10 0.10
9 69 0.67
10 12 0.12
ACGTcount: A:0.45, C:0.19, G:0.01, T:0.34
Consensus pattern (9 bp):
CATAACTTA
Found at i:8638479 original size:52 final size:52
Alignment explanation
Indices: 8638408--8638579 Score: 299
Period size: 52 Copynumber: 3.3 Consensus size: 52
8638398 AAAACTTTGG
* *
8638408 ATCATAACGTACATAACTTACATAACTTACATGATACATAAATATATATCAT
1 ATCATAACTTACATAACTTACATAACTTACATAATACATAAATATATATCAT
* *
8638460 ATCATAACTTACATCACTTACATAACTTACATAATTCATAAATATATATCAT
1 ATCATAACTTACATAACTTACATAACTTACATAATACATAAATATATATCAT
*
8638512 ATCATAACTTACATAACTTACATAACTTACATTATACATAAATATATATCAT
1 ATCATAACTTACATAACTTACATAACTTACATAATACATAAATATATATCAT
8638564 ATCATAACTTACATAA
1 ATCATAACTTACATAA
8638580 AACTTTGGAT
Statistics
Matches: 113, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 113 1.00
ACGTcount: A:0.46, C:0.18, G:0.01, T:0.35
Consensus pattern (52 bp):
ATCATAACTTACATAACTTACATAACTTACATAATACATAAATATATATCAT
Found at i:8640429 original size:9 final size:9
Alignment explanation
Indices: 8640415--8640463 Score: 62
Period size: 9 Copynumber: 5.4 Consensus size: 9
8640405 TTTGGTTAAC
8640415 AATTAACCG
1 AATTAACCG
8640424 AATTAACCG
1 AATTAACCG
*
8640433 AATTACCCG
1 AATTAACCG
*
8640442 AATTACCCG
1 AATTAACCG
* *
8640451 ATTTATCCG
1 AATTAACCG
8640460 AATT
1 AATT
8640464 GAATCTCTAC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.29
Consensus pattern (9 bp):
AATTAACCG
Found at i:8640503 original size:37 final size:37
Alignment explanation
Indices: 8640462--8640536 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
8640452 TTTATCCGAA
* *
8640462 TTGAATCTCTACATAATTAAAAATATGACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATGACATAAGTCT
* *
8640499 TTGAATCACTACATAATTAAAAACATTACATAATTCT
1 TTGAATCACTACATAATTAAAAACATGACATAAGTCT
8640536 T
1 T
8640537 GAAATTAACA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.44, C:0.15, G:0.05, T:0.36
Consensus pattern (37 bp):
TTGAATCACTACATAATTAAAAACATGACATAAGTCT
Found at i:8640747 original size:39 final size:39
Alignment explanation
Indices: 8640665--8640773 Score: 184
Period size: 39 Copynumber: 2.8 Consensus size: 39
8640655 ACTTAAGAGT
*
8640665 TAGACTTTAGTTTTATTTTTATTGGGTT-GGTAATTAGG
1 TAGACTTTAGTTTTAGTTTTATTGGGTTGGGTAATTAGG
* *
8640703 TAGACTTTAGTTTTAGTTTTATTTGGTTGGGTAATTGGG
1 TAGACTTTAGTTTTAGTTTTATTGGGTTGGGTAATTAGG
8640742 TAGACTTTAGTTTTAGTTTTATTGGGTTGGGT
1 TAGACTTTAGTTTTAGTTTTATTGGGTTGGGT
8640774 GGGATAATTT
Statistics
Matches: 66, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
38 26 0.39
39 40 0.61
ACGTcount: A:0.18, C:0.03, G:0.27, T:0.52
Consensus pattern (39 bp):
TAGACTTTAGTTTTAGTTTTATTGGGTTGGGTAATTAGG
Found at i:8644976 original size:66 final size:65
Alignment explanation
Indices: 8644864--8645006 Score: 171
Period size: 66 Copynumber: 2.2 Consensus size: 65
8644854 GCAAATTGCT
* * * *
8644864 CAACTTAAAGCGGAGACAACATCGAGAGAAGTAGAGGCTCAAAGAAAATATGAAGAACTCCAGCT
1 CAACTTAAAACGGAGACAACAGCGAGAGAAGCAGAGGC-CAAAGAAAATATGAAGAACTCCAACT
8644929 A
65 A
* * *
8644930 CAACTTAAAACGGAGGCAACAGCGAGGGAAGCAGAGG-CAAGTAGAAAATATGACGAACTCCAAC
1 CAACTTAAAACGGAGACAACAGCGAGAGAAGCAGAGGCCAA--AGAAAATATGAAGAACTCCAAC
8644994 TA
64 TA
*
8644996 CAGCTTCAAAA
1 CAACTT-AAAA
8645007 TATGATGAAA
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
64 3 0.05
66 59 0.89
67 4 0.06
ACGTcount: A:0.45, C:0.20, G:0.23, T:0.13
Consensus pattern (65 bp):
CAACTTAAAACGGAGACAACAGCGAGAGAAGCAGAGGCCAAAGAAAATATGAAGAACTCCAACTA
Found at i:8645377 original size:43 final size:43
Alignment explanation
Indices: 8645311--8645526 Score: 236
Period size: 43 Copynumber: 5.0 Consensus size: 43
8645301 AAACATGACT
*
8645311 TTTAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAGGTCATGTTC
1 TTTAGCGGCGTTTATGGGAAAAGCGCCGCTAAAGGTCATGTTC
* * * *
8645354 TTTA-CTGGCATTTGTGGGGAAAGCGTCGCTAAAGGTCATGTTC
1 TTTAGC-GGCGTTTATGGGAAAAGCGCCGCTAAAGGTCATGTTC
* **
8645397 TTTAGCGGTGTTTATGGGAAAATTGCCGCTAAAGGTCATGTTC
1 TTTAGCGGCGTTTATGGGAAAAGCGCCGCTAAAGGTCATGTTC
** * *
8645440 CATAGCGGCGTTTATGGGGAAAGCGCCGCTAAGGGTCATGTTC
1 TTTAGCGGCGTTTATGGGAAAAGCGCCGCTAAAGGTCATGTTC
** * * * ** *
8645483 TTTAGCGGTATTTTTGTGAGAAGCATCGCTAAATGTCATGTTC
1 TTTAGCGGCGTTTATGGGAAAAGCGCCGCTAAAGGTCATGTTC
8645526 T
1 T
8645527 ATAGTGAAAT
Statistics
Matches: 141, Mismatches: 30, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
42 1 0.01
43 139 0.99
44 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (43 bp):
TTTAGCGGCGTTTATGGGAAAAGCGCCGCTAAAGGTCATGTTC
Found at i:8645458 original size:86 final size:86
Alignment explanation
Indices: 8645311--8645525 Score: 261
Period size: 86 Copynumber: 2.5 Consensus size: 86
8645301 AAACATGACT
* * ** *
8645311 TTTAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAGGTCATGTTCTTTACTGGCATTTGTGGGGAAA
1 TTTAGCGGTGTTTATGGGAAAAGCGCCGCTAAAGGTCATGTTCCATACTGGCATTTATGGGGAAA
*
8645376 GCGTCGCTAAAGGTCATGTTC
66 GCGCCGCTAAAGGTCATGTTC
** *
8645397 TTTAGCGGTGTTTATGGGAAAATTGCCGCTAAAGGTCATGTTCCATAGC-GGCGTTTATGGGGAA
1 TTTAGCGGTGTTTATGGGAAAAGCGCCGCTAAAGGTCATGTTCCATA-CTGGCATTTATGGGGAA
*
8645461 AGCGCCGCTAAGGGTCATGTTC
65 AGCGCCGCTAAAGGTCATGTTC
* * * * ** *
8645483 TTTAGCGGTATTTTTGTGAGAAGCATCGCTAAATGTCATGTTC
1 TTTAGCGGTGTTTATGGGAAAAGCGCCGCTAAAGGTCATGTTC
8645526 TATAGTGAAA
Statistics
Matches: 109, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
86 108 0.99
87 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (86 bp):
TTTAGCGGTGTTTATGGGAAAAGCGCCGCTAAAGGTCATGTTCCATACTGGCATTTATGGGGAAA
GCGCCGCTAAAGGTCATGTTC
Found at i:8645547 original size:129 final size:129
Alignment explanation
Indices: 8645313--8645581 Score: 308
Period size: 129 Copynumber: 2.1 Consensus size: 129
8645303 ACATGACTTT
* *
8645313 TAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAGGTCATGTTCTTTACTGGCATTTGTGGGGAAAGC
1 TAGCGGCGTTTATGGGAAAAGCGCCGCTAAAGGTCATGTTCTTTACTGGCATTTGTGGAGAAAGC
* * *** **
8645378 GTCGCTAAAGGTCATGTTCTTTAGCGGTGTTTATGGGAAAATTGCCGCTAAAGGTCATGTTCCA
66 ATCGCTAAAGGTCATGTTCTATAGCGAAATTTATGGGAAAAACGCCGCTAAAGGTCATGTTCCA
* * * *
8645442 TAGCGGCGTTTATGGGGAAAGCGCCGCTAAGGGTCATGTTCTTTAGC-GGTATTTTTGTGAG-AA
1 TAGCGGCGTTTATGGGAAAAGCGCCGCTAAAGGTCATGTTCTTTA-CTGGCATTTGTG-GAGAAA
* * * * ** * *
8645505 GCATCGCTAAATGTCATGTTCTATAGTGAAATTTTTGTGAAAAACGTTGCTAAATGTCATGTTCT
64 GCATCGCTAAAGGTCATGTTCTATAGCGAAATTTATGGGAAAAACGCCGCTAAAGGTCATGTTCC
8645570 A
129 A
*
8645571 TAGCGACGTTT
1 TAGCGGCGTTT
8645582 TTCCACATAA
Statistics
Matches: 116, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
129 113 0.97
130 3 0.03
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.33
Consensus pattern (129 bp):
TAGCGGCGTTTATGGGAAAAGCGCCGCTAAAGGTCATGTTCTTTACTGGCATTTGTGGAGAAAGC
ATCGCTAAAGGTCATGTTCTATAGCGAAATTTATGGGAAAAACGCCGCTAAAGGTCATGTTCCA
Found at i:8645583 original size:43 final size:43
Alignment explanation
Indices: 8645321--8645583 Score: 186
Period size: 43 Copynumber: 6.1 Consensus size: 43
8645311 TTTAGCGGCG
* * * *
8645321 TTTTTGGGAAAAGCGCCGCTAAAGGTCATGTTCTTTA-CTGGCA
1 TTTTTGTGAAAAGCGTCGCTAAAGGTCATGTTCTATAGC-GACA
* * * * ***
8645364 TTTGTGGGGAAAGCGTCGCTAAAGGTCATGTTCTTTAGCGGTG
1 TTTTTGTGAAAAGCGTCGCTAAAGGTCATGTTCTATAGCGACA
* * ** * * * *
8645407 TTTATGGGAAAATTGCCGCTAAAGGTCATGTTCCATAGCGGCG
1 TTTTTGTGAAAAGCGTCGCTAAAGGTCATGTTCTATAGCGACA
* * * * * * **
8645450 TTTATGGGGAAAGCGCCGCTAAGGGTCATGTTCTTTAGCGGTA
1 TTTTTGTGAAAAGCGTCGCTAAAGGTCATGTTCTATAGCGACA
* * * * *
8645493 TTTTTGTGAGAAGCATCGCTAAATGTCATGTTCTATAGTGAAA
1 TTTTTGTGAAAAGCGTCGCTAAAGGTCATGTTCTATAGCGACA
* * * *
8645536 TTTTTGTGAAAAACGTTGCTAAATGTCATGTTCTATAGCGACG
1 TTTTTGTGAAAAGCGTCGCTAAAGGTCATGTTCTATAGCGACA
8645579 TTTTT
1 TTTTT
8645584 CCACATAAAC
Statistics
Matches: 179, Mismatches: 40, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
43 178 0.99
44 1 0.01
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (43 bp):
TTTTTGTGAAAAGCGTCGCTAAAGGTCATGTTCTATAGCGACA
Found at i:8649103 original size:25 final size:25
Alignment explanation
Indices: 8649041--8649097 Score: 105
Period size: 25 Copynumber: 2.3 Consensus size: 25
8649031 AAAGAAAAGA
*
8649041 TTTTAATTTTATATTATCATTCAAG
1 TTTTAATTTTATATTATCATGCAAG
8649066 TTTTAATTTTATATTATCATGCAAG
1 TTTTAATTTTATATTATCATGCAAG
8649091 TTTTAAT
1 TTTTAAT
8649098 GATATAATCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (25 bp):
TTTTAATTTTATATTATCATGCAAG
Found at i:8649107 original size:23 final size:24
Alignment explanation
Indices: 8649041--8649108 Score: 75
Period size: 25 Copynumber: 2.8 Consensus size: 24
8649031 AAAGAAAAGA
* *
8649041 TTTTAATTTTATATTATCATTCAAG
1 TTTTAA-TTGATATTATCATGCAAG
*
8649066 TTTTAATTTTATATTATCATGCAAG
1 TTTTAA-TTGATATTATCATGCAAG
*
8649091 TTTTAA-TGATATAATCAT
1 TTTTAATTGATATTATCAT
8649109 ATCAATTAGT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
23 10 0.25
25 30 0.75
ACGTcount: A:0.34, C:0.07, G:0.06, T:0.53
Consensus pattern (24 bp):
TTTTAATTGATATTATCATGCAAG
Found at i:8649617 original size:19 final size:19
Alignment explanation
Indices: 8649593--8649629 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
8649583 TCCAGTTCTT
*
8649593 ATATTTTTAATTTTAAATA
1 ATATTTTTAATTTCAAATA
8649612 ATATTTTTAATTTCAAAT
1 ATATTTTTAATTTCAAAT
8649630 TATCTCACTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.57
Consensus pattern (19 bp):
ATATTTTTAATTTCAAATA
Found at i:8660100 original size:15 final size:16
Alignment explanation
Indices: 8660064--8660099 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
8660054 CAAAAGGTAT
8660064 AAAAATTCTTAGCAAA
1 AAAAATTCTTAGCAAA
*
8660080 AAAAATTCTTAGTAAA
1 AAAAATTCTTAGCAAA
8660096 AAAA
1 AAAA
8660100 TGGAAAAAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.61, C:0.08, G:0.06, T:0.25
Consensus pattern (16 bp):
AAAAATTCTTAGCAAA
Found at i:8662659 original size:38 final size:38
Alignment explanation
Indices: 8662607--8662686 Score: 108
Period size: 38 Copynumber: 2.1 Consensus size: 38
8662597 TTTAATTAAG
* * *
8662607 TTTTTAAAATTTAAAAAT-TTTAAAAAGTTATAAAACTA
1 TTTTTAAAAATTAAAAATCATTAAAAA-TTATAAAAATA
*
8662645 TTTTTAAAAATTAAACATCATTAAAAATTATAAAAATA
1 TTTTTAAAAATTAAAAATCATTAAAAATTATAAAAATA
8662683 TTTT
1 TTTT
8662687 CTTAATAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
38 30 0.81
39 7 0.19
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (38 bp):
TTTTTAAAAATTAAAAATCATTAAAAATTATAAAAATA
Found at i:8662986 original size:9 final size:9
Alignment explanation
Indices: 8662972--8663058 Score: 56
Period size: 9 Copynumber: 9.7 Consensus size: 9
8662962 CATAATAAAA
8662972 TTTTAATAT
1 TTTTAATAT
8662981 TTTTAATAT
1 TTTTAATAT
8662990 TTTTAATA-
1 TTTTAATAT
*
8662998 -ATTAATA-
1 TTTTAATAT
*
8663005 ATTTATATAT
1 TTTTA-ATAT
* **
8663015 TATTACCAT
1 TTTTAATAT
8663024 TTTTAATAAT
1 TTTTAAT-AT
8663034 TTTTAGA-AT
1 TTTTA-ATAT
*
8663043 TATTTAACAT
1 T-TTTAATAT
8663053 TTTTAA
1 TTTTAA
8663059 GAATAGATTA
Statistics
Matches: 62, Mismatches: 9, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
7 6 0.10
8 3 0.05
9 35 0.56
10 17 0.27
11 1 0.02
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.57
Consensus pattern (9 bp):
TTTTAATAT
Found at i:8663054 original size:29 final size:27
Alignment explanation
Indices: 8662999--8663058 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 27
8662989 TTTTTAATAA
* *
8662999 TTAATAATTTATATATTATTACCATTT
1 TTAATAATTTATAAATTATTAACATTT
*
8663026 TTAATAATTTTTAGAATTATTTAACATTT
1 TTAATAATTTATA-AATTA-TTAACATTT
8663055 TTAA
1 TTAA
8663059 GAATAGATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 12 0.43
28 4 0.14
29 12 0.43
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.55
Consensus pattern (27 bp):
TTAATAATTTATAAATTATTAACATTT
Found at i:8673438 original size:16 final size:16
Alignment explanation
Indices: 8673413--8673447 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
8673403 TTGTGTTTTG
*
8673413 TTTTGGCTGCATGACA
1 TTTTGACTGCATGACA
*
8673429 TTTTGACTGCATGGCA
1 TTTTGACTGCATGACA
8673445 TTT
1 TTT
8673448 CATCATAGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.17, C:0.17, G:0.23, T:0.43
Consensus pattern (16 bp):
TTTTGACTGCATGACA
Found at i:8676565 original size:52 final size:52
Alignment explanation
Indices: 8676508--8676855 Score: 434
Period size: 52 Copynumber: 6.9 Consensus size: 52
8676498 ATCAAGTGAC
* *
8676508 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATTTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
* ** *
8676560 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
* * *
8676612 AAAGTGATAAGTAATAGC-TTCGACTATACTTATCTGATCAAGTGAC------
1 AAAGTGATAAGTGATAGCTTTAG-CTACACTTATCTGATCAAGTGACAAGTGG
*
8676658 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
* ** *
8676710 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC------
1 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
** *
8676756 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
*
8676808 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAA
1 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAA
8676856 AGTGATAAGT
Statistics
Matches: 260, Mismatches: 22, Indels: 28
0.84 0.07 0.09
Matches are distributed among these distances:
46 82 0.32
47 3 0.01
51 2 0.01
52 173 0.67
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (52 bp):
AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
Found at i:8676676 original size:98 final size:98
Alignment explanation
Indices: 8676560--8676866 Score: 499
Period size: 98 Copynumber: 3.1 Consensus size: 98
8676550 TGACAAGTGG
* *
8676560 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
8676625 ATAGCTTCGACTATACTTATCTGATCAAGTGAC
66 ATAGCTTCGACTATACTTATCTGATCAAGTGAC
* **
8676658 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
*
8676723 ATAGCTTCGGCTATACTTATCTGATCAAGTGAC
66 ATAGCTTCGACTATACTTATCTGATCAAGTGAC
* *
8676756 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
* * *
8676821 ATAGCTT-TAGCTACACTTATCTGATCAAGAGAC
66 ATAGCTTCGA-CTATACTTATCTGATCAAGTGAC
8676854 AAAGTGATAAGTG
1 AAAGTGATAAGTG
8676867 GCTACACTTA
Statistics
Matches: 193, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
98 193 1.00
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.29
Consensus pattern (98 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
ATAGCTTCGACTATACTTATCTGATCAAGTGAC
Found at i:8676714 original size:150 final size:144
Alignment explanation
Indices: 8676494--8676855 Score: 562
Period size: 150 Copynumber: 2.4 Consensus size: 144
8676484 TTTGAGTACT
*
8676494 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATTTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
8676559 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGT
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC------AAAGTGATAAGT
*
8676624 AATAGCTTCGACTATACTTA
125 AATAGCTTCGACTACACTTA
8676644 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
8676709 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGATAGC
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTAATAGC
*
8676774 TTCGGCTACACTTA
131 TTCGACTACACTTA
* *
8676788 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
1 TCTGATCAAGTGAC------AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGA
8676853 CAA
60 CAA
8676856 AGTGATAAGT
Statistics
Matches: 200, Mismatches: 6, Indels: 12
0.92 0.03 0.06
Matches are distributed among these distances:
144 43 0.22
150 157 0.79
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (144 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTAATAGC
TTCGACTACACTTA
Found at i:8676874 original size:37 final size:37
Alignment explanation
Indices: 8676830--8677049 Score: 381
Period size: 37 Copynumber: 6.0 Consensus size: 37
8676820 GATAGCTTTA
*
8676830 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
8676867 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
8676904 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
8676941 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
8676978 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
8677015 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
8677050 ATCATACGTA
Statistics
Matches: 176, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
35 11 0.06
36 4 0.02
37 161 0.91
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:8679180 original size:6 final size:6
Alignment explanation
Indices: 8679169--8679202 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
8679159 AAAAATAAAA
*
8679169 AAAATT ACAATT AAAATT AAAATT AAAATT AAAA
1 AAAATT AAAATT AAAATT AAAATT AAAATT AAAA
8679203 AATAAAATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (6 bp):
AAAATT
Found at i:8679223 original size:20 final size:23
Alignment explanation
Indices: 8679201--8679253 Score: 69
Period size: 20 Copynumber: 2.5 Consensus size: 23
8679191 TTAAAATTAA
8679201 AAAAT-AAAATAATCAAAA-C--
1 AAAATAAAAATAATCAAAATCGA
8679220 AAAATAAAAATAATCAAAATCGA
1 AAAATAAAAATAATCAAAATCGA
*
8679243 AAAATGAAAAT
1 AAAATAAAAAT
8679254 GATGAAAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 5 0.17
20 13 0.45
21 1 0.03
23 10 0.34
ACGTcount: A:0.72, C:0.08, G:0.04, T:0.17
Consensus pattern (23 bp):
AAAATAAAAATAATCAAAATCGA
Found at i:8680295 original size:14 final size:11
Alignment explanation
Indices: 8680261--8680285 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
8680251 CTTTGAATAC
8680261 AAAAAAATAAT
1 AAAAAAATAAT
8680272 AAAAAAATAAT
1 AAAAAAATAAT
8680283 AAA
1 AAA
8680286 CCAAAAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAAAAATAAT
Found at i:8681612 original size:46 final size:47
Alignment explanation
Indices: 8681545--8681914 Score: 347
Period size: 46 Copynumber: 7.6 Consensus size: 47
8681535 GCAGTGGAGC
** * *
8681545 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCTTTGGTGTCGCAGT-
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTTGCAGTA
* ** *
8681591 AGATTAAAGTTGAAGGCAGCGAATCTTATTTCTATGGTG-TGACAGTGGAA
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTTG-CAGT---A
* * * * *
8681641 CAGATTAAAGTTGAAGGTAACGAATATTTTTTCCCTGGCGTTGCAGT-
1 -AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTTGCAGTA
* *
8681688 AGATTAAAGCTGAAGGCAGCGAATCTTTTTTCCTTGGCGTTGCAGTGGAA
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTTGCAGT---A
*
8681738 CAGATTAAAGCTGAAGGCAGCAAATCTT-TTTCCCTGGCGTTGCAGTGGAA
1 -AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTTGCAGT---A
* *
8681788 CAGATTAAAGCTGAAGGCAGTGAATCTT-TTTCCCTAGCGTTGCAGT-
1 -AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTTGCAGTA
*
8681834 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCTCTGGCGTTGCAGTGGAA
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTTGCAGT---A
* * *
8681884 CAGATTAAAGCTAAAGGTAGCGACTCTTATT
1 -AGATTAAAGCTGAAGGCAGCGAATCTTATT
8681915 CTTTTGGCGT
Statistics
Matches: 280, Mismatches: 26, Indels: 31
0.83 0.08 0.09
Matches are distributed among these distances:
45 27 0.10
46 98 0.35
50 64 0.23
51 89 0.32
52 2 0.01
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (47 bp):
AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTTGCAGTA
Found at i:8681687 original size:97 final size:95
Alignment explanation
Indices: 8681528--8681950 Score: 385
Period size: 97 Copynumber: 4.3 Consensus size: 95
8681518 CTTATACCCC
* * * * ** * *
8681528 TGGCGTGGCAGTGGAGCAGATTAAAGCTGAAGGCAGCGAATCTTATTTCTTTGGTGTCGCAGTAG
1 TGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATATTTTTTCCCTGGCGTTGCAGTAG
*
8681593 ATTAAAGTTGAAGGCAGCGAATCTTATTTCT
66 ATTAAAGCTGAAGGCAGCGAATCTT-TTTCT
* * * *
8681624 ATGGTG-TGACAGTGGAACAGATTAAAGTTGAAGGTAACGAATATTTTTTCCCTGGCGTTGCAGT
1 -TGGCGTTG-CAGTGGAACAGATTAAAGCTGAAGGCAGCGAATATTTTTTCCCTGGCGTTGCAGT
8681688 AGATTAAAGCTGAAGGCAGCGAATCTTTTTTCCT
64 AGATTAAAGCTGAAGGCAGCGAATC-TTTTT-CT
8681722 TGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGC-AA-ATCTTTTTCCCTGGCGTTGCAGTG
1 TGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATAT-TTTTTCCCTGGCGTTGCAGT-
* *
8681785 GAACAGATTAAAGCTGAAGGCAGTGAATCTTTTTCCC
64 ----AGATTAAAGCTGAAGGCAGCGAATCTTTTT-CT
* * * *
8681822 TAGCGTTGCAGT-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCTCTGGCGTTGCAGTGG
1 TGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATATTTTTTCCCTGGCGTTGCAGT--
* * * *
8681882 AACAGATTAAAGCTAAAGGTAGCGACTCTTATTCTTT
64 ---AGATTAAAGCTGAAGGCAGCGAATCTT-TT-TCT
* * *
8681919 TGGCGTTGCAATGGAATATATTAAAGCTGAAG
1 TGGCGTTGCAGTGGAACAGATTAAAGCTGAAG
8681951 TAGAGCGGAT
Statistics
Matches: 275, Mismatches: 32, Indels: 33
0.81 0.09 0.10
Matches are distributed among these distances:
95 22 0.08
96 71 0.26
97 119 0.43
98 7 0.03
100 18 0.07
101 24 0.09
102 14 0.05
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.30
Consensus pattern (95 bp):
TGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATATTTTTTCCCTGGCGTTGCAGTAG
ATTAAAGCTGAAGGCAGCGAATCTTTTTCT
Found at i:8681758 original size:51 final size:51
Alignment explanation
Indices: 8681528--8681950 Score: 413
Period size: 51 Copynumber: 8.6 Consensus size: 51
8681518 CTTATACCCC
* * * *
8681528 TGGCGTGGCAGTGGAGCAGATTAAAGCTGAAGGCAGCGAATCTTATTTCTT
1 TGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTTTTTCCT
* * * *
8681579 TGGTGTCGCAGT-----AGATTAAAGTTGAAGGCAGCGAATCTTATTT-CT
1 TGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTTTTTCCT
* * * * * *
8681624 ATGGTG-TGACAGTGGAACAGATTAAAGTTGAAGGTAACGAATATTTTTTCCC
1 -TGGCGTTG-CAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTTTTTCCT
8681676 TGGCGTTGCAGT-----AGATTAAAGCTGAAGGCAGCGAATCTTTTTTCCT
1 TGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTTTTTCCT
* *
8681722 TGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCAAATC-TTTTTCCC
1 TGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTTTTTCCT
* *
8681772 TGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGTGAATC-TTTTTCCC
1 TGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTTTTTCCT
* *
8681822 TAGCGTTGCAGT-----AGATTAAAGCTGAAGGCAGCGAATCTTATTT-CT
1 TGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTTTTTCCT
* * *
8681867 CTGGCGTTGCAGTGGAACAGATTAAAGCTAAAGGTAGCGACTCTTATTCTT--T
1 -TGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTT-TT-TTCCT
* * *
8681919 TGGCGTTGCAATGGAATATATTAAAGCTGAAG
1 TGGCGTTGCAGTGGAACAGATTAAAGCTGAAG
8681951 TAGAGCGGAT
Statistics
Matches: 316, Mismatches: 33, Indels: 46
0.80 0.08 0.12
Matches are distributed among these distances:
45 27 0.09
46 95 0.30
50 66 0.21
51 121 0.38
52 5 0.02
53 2 0.01
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.30
Consensus pattern (51 bp):
TGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTTTTTCCT
Found at i:8682040 original size:51 final size:51
Alignment explanation
Indices: 8681958--8682087 Score: 134
Period size: 51 Copynumber: 2.5 Consensus size: 51
8681948 AAGTAGAGCG
* * * * * * **
8681958 GATTAAAGTTGAAGGCAGCGAATCCTATTTCCTTGGCGTTACAGTGGAACA
1 GATTAAAGCTAAAGGTAGCGAATCTTATTTCCCTAGCGTTACAACGGAACA
* * * * *
8682009 TATTAAAGCTAAATGTAGCGAATCTTGTTTCCCTAGCGTTGCAACGGAGCA
1 GATTAAAGCTAAAGGTAGCGAATCTTATTTCCCTAGCGTTACAACGGAACA
*
8682060 GATTAAAGCTGAAGGTAGCGAATCTTAT
1 GATTAAAGCTAAAGGTAGCGAATCTTAT
8682088 CTCACTGTGC
Statistics
Matches: 62, Mismatches: 17, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (51 bp):
GATTAAAGCTAAAGGTAGCGAATCTTATTTCCCTAGCGTTACAACGGAACA
Found at i:8682065 original size:123 final size:123
Alignment explanation
Indices: 8681835--8682325 Score: 509
Period size: 123 Copynumber: 3.9 Consensus size: 123
8681825 CGTTGCAGTA
* * *
8681835 GATTAAAGCTGAAGGCAGCGAATCTTATTT-CTCTGGCGTTGCAGTGGAACAGATTAAAGCTAAA
1 GATTAAAGTTGAAGGCAGCGAATCCTATTTCCT-TGGCGTTACAGTGGAACAGATTAAAGCTAAA
* * ** * * * *
8681899 GGTAGCGACTCTT-ATTCTTTTGGCGTTGCAATGGAATATATTAAAGCTGAAGTAGAGCG
65 GGTAGCGAATCTTGTTTC-CCTAGCGTTGCAACGGAACAGATTAAAGCTGAAGTAGAGCG
* *
8681958 GATTAAAGTTGAAGGCAGCGAATCCTATTTCCTTGGCGTTACAGTGGAACATATTAAAGCTAAAT
1 GATTAAAGTTGAAGGCAGCGAATCCTATTTCCTTGGCGTTACAGTGGAACAGATTAAAGCTAAAG
* * *
8682023 GTAGCGAATCTTGTTTCCCTAGCGTTGCAACGGAGCAGATTAAAGCTGAAGGTAGCGAATCT
66 GTAGCGAATCTTGTTTCCCTAGCGTTGCAACGGAACAGATTAAAGCTGAA-GTA--G-AGCG
* ** * * * *
8682085 TATCTCACTGTGCTGAATGCAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCT
1 GAT-T-AAAGT--TGAAGGCAGCGAATCCTATTTCCTTGGCGTTACAGTGGAACAGATTAAAGCT
* * * * * * *
8682150 AAAGGTAGCAAATATTATTTCCCTAGCGTTACAACGGAATAGATTAAAGTTGAAGCAGAGCG
62 AAAGGTAGCGAATCTTGTTTCCCTAGCGTTGCAACGGAACAGATTAAAGCTGAAGTAGAGCG
* ** * * * * *
8682212 GATTAAAGTCGTGGGCAGCGAATCCTATCTCTTTGGCATTAAAGTGGAACAGATTAAAGCTTAAG
1 GATTAAAGTTGAAGGCAGCGAATCCTATTTCCTTGGCGTTACAGTGGAACAGATTAAAGCTAAAG
* * *
8682277 GTAGCGAATCTTGTTTCCCTAGCGTTGTAGCGGAGCAGATTAAAGCTGA
66 GTAGCGAATCTTGTTTCCCTAGCGTTGCAACGGAACAGATTAAAGCTGA
8682326 GGGCAGCGAC
Statistics
Matches: 299, Mismatches: 59, Indels: 20
0.79 0.16 0.05
Matches are distributed among these distances:
123 178 0.60
124 8 0.03
125 3 0.01
126 2 0.01
127 8 0.03
128 2 0.01
129 3 0.01
130 2 0.01
131 93 0.31
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (123 bp):
GATTAAAGTTGAAGGCAGCGAATCCTATTTCCTTGGCGTTACAGTGGAACAGATTAAAGCTAAAG
GTAGCGAATCTTGTTTCCCTAGCGTTGCAACGGAACAGATTAAAGCTGAAGTAGAGCG
Found at i:8682158 original size:80 final size:80
Alignment explanation
Indices: 8682020--8682167 Score: 215
Period size: 80 Copynumber: 1.9 Consensus size: 80
8682010 ATTAAAGCTA
* * * * * *
8682020 AATGTAGCGAATCTTGTTTCCCTAGCGTTGCAACGGAGCAGATTAAAGCTGAAGGTAGCGAATCT
1 AATGCAGCGAATCTTATTTCCCTAGCGTTGCAACGGAACAGATTAAAGCTAAAGGTAGCAAATAT
8682085 TATCTCACTGTGCTG
66 TATCTCACTGTGCTG
* **
8682100 AATGCAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTAAAGGTAGCAAATAT
1 AATGCAGCGAATCTTATTTCCCTAGCGTTGCAACGGAACAGATTAAAGCTAAAGGTAGCAAATAT
8682165 TAT
66 TAT
8682168 TTCCCTAGCG
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
80 59 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (80 bp):
AATGCAGCGAATCTTATTTCCCTAGCGTTGCAACGGAACAGATTAAAGCTAAAGGTAGCAAATAT
TATCTCACTGTGCTG
Found at i:8682298 original size:254 final size:254
Alignment explanation
Indices: 8681842--8682344 Score: 729
Period size: 254 Copynumber: 2.0 Consensus size: 254
8681832 GTAGATTAAA
* *
8681842 GCTGAAGGCAGCGAATCTTATTTCTCTGGCGTTGCAGTGGAACAGATTAAAGCTAAAGGTAGCGA
1 GCTGAAGGCAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTAAAGGTAGCAA
* * ** * * * * * *
8681907 CTCTTATTCTTTTGGCGTTGCAATGGAATATATTAAAGCTGAAGTAGAGCGGATTAAAGTTGAAG
66 ATATTATTCTCCTAGCGTTACAACGGAATAGATTAAAGCTGAAGCAGAGCGGATTAAAGTCGAAG
* * * * *
8681972 GCAGCGAATCCTATTTCCTTGGCGTTACAGTGGAACATATTAAAGCTAAATGTAGCGAATCTTGT
131 GCAGCGAATCCTATCTCCTTGGCATTAAAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGT
* *
8682037 TTCCCTAGCGTTGCAACGGAGCAGATTAAAGCTGAAGGTAGCGAATCTTATCTCACTGT
196 TTCCCTAGCGTTGCAACGGAGCAGATTAAAGCTGAAGGCAGCGAATCTAATCTCACTGT
*
8682096 GCTGAATGCAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTAAAGGTAGCAA
1 GCTGAAGGCAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTAAAGGTAGCAA
* **
8682161 ATATTATT-TCCCTAGCGTTACAACGGAATAGATTAAAGTTGAAGCAGAGCGGATTAAAGTCGTG
66 ATATTATTCT-CCTAGCGTTACAACGGAATAGATTAAAGCTGAAGCAGAGCGGATTAAAGTCGAA
* *
8682225 GGCAGCGAATCCTATCTCTTTGGCATTAAAGTGGAACAGATTAAAGCTTAAGGTAGCGAATCTTG
130 GGCAGCGAATCCTATCTCCTTGGCATTAAAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTG
* * * *
8682290 TTTCCCTAGCGTTGTAGCGGAGCAGATTAAAGCTGAGGGCAGCGACTCTAATCTC
195 TTTCCCTAGCGTTGCAACGGAGCAGATTAAAGCTGAAGGCAGCGAATCTAATCTC
8682345 CCTGACGTTA
Statistics
Matches: 219, Mismatches: 29, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
253 1 0.00
254 218 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (254 bp):
GCTGAAGGCAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTAAAGGTAGCAA
ATATTATTCTCCTAGCGTTACAACGGAATAGATTAAAGCTGAAGCAGAGCGGATTAAAGTCGAAG
GCAGCGAATCCTATCTCCTTGGCATTAAAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGT
TTCCCTAGCGTTGCAACGGAGCAGATTAAAGCTGAAGGCAGCGAATCTAATCTCACTGT
Found at i:8682409 original size:169 final size:169
Alignment explanation
Indices: 8682210--8682683 Score: 668
Period size: 169 Copynumber: 2.8 Consensus size: 169
8682200 TGAAGCAGAG
* *
8682210 CGGATTAAAG-TCGTGGGCAGCGAATCCTATCTCTTTGGCATTAAAGTGGAACAGATTAAAGCTT
1 CGGATTAAAGCT-GTGGGCAGCGAATCCTATCTCTTTGGCATTACAGTGGAACAGATTAAAGCTA
* *
8682274 AAGGTAGCGAATCTTGTTTCCCTAGCGTTGTAGCGGAGCAGATTAAAGCTGAGGGCAGCGACTCT
65 AAGGTAGCGAATCTTGTTTCCCTGGCGTTGTAGCGGAGCAGATTAAAGCTGAGGGCAGCGAATCT
*
8682339 AATCTCCCT-GACGTTAAGACTT-GAAATGGCTGAAGTGGAA
130 AATCTCCCTAGA-GTTAAGACTTAG-AATAGCTGAAGTGGAA
*
8682379 CGGATTAAAGCTGTGGGCAGCGAATCCTATCTCTTTGGCATTACAGTGAAACAGATTAAAGCTAA
1 CGGATTAAAGCTGTGGGCAGCGAATCCTATCTCTTTGGCATTACAGTGGAACAGATTAAAGCTAA
* * * * ** *
8682444 AGGTAGCGAATTTTATTTCCCGGGTGTTAAAGCGGAGCAGATTAAAGCTGAGGGCAACGAATC-A
66 AGGTAGCGAATCTTGTTTCCCTGGCGTTGTAGCGGAGCAGATTAAAGCTGAGGGCAGCGAATCTA
* * *
8682508 TTTCTCCCTAGAGTTAATACTTAGAATAGCTGAAGTGGAG
131 -ATCTCCCTAGAGTTAAGACTTAGAATAGCTGAAGTGGAA
*
8682548 CGGATTAAAGCTGTGGGCAGCGAATCCTATCTCTTTGGCATTACAGTAGAACAGATTAAAGCTAA
1 CGGATTAAAGCTGTGGGCAGCGAATCCTATCTCTTTGGCATTACAGTGGAACAGATTAAAGCTAA
* * * * * * *
8682613 AGGTAGCGAGTCTGGTTTCCCTGGCATTGTAGCGGAGTAGATTAAAGTTGAAGGCAGCGAATCTC
66 AGGTAGCGAATCTTGTTTCCCTGGCGTTGTAGCGGAGCAGATTAAAGCTGAGGGCAGCGAATCTA
8682678 ATCTCC
131 ATCTCC
8682684 TTGGTGTTAA
Statistics
Matches: 267, Mismatches: 33, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
168 1 0.00
169 262 0.98
170 4 0.01
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.26
Consensus pattern (169 bp):
CGGATTAAAGCTGTGGGCAGCGAATCCTATCTCTTTGGCATTACAGTGGAACAGATTAAAGCTAA
AGGTAGCGAATCTTGTTTCCCTGGCGTTGTAGCGGAGCAGATTAAAGCTGAGGGCAGCGAATCTA
ATCTCCCTAGAGTTAAGACTTAGAATAGCTGAAGTGGAA
Found at i:8683001 original size:89 final size:89
Alignment explanation
Indices: 8682850--8683022 Score: 240
Period size: 89 Copynumber: 1.9 Consensus size: 89
8682840 TCTTATCTCC
* * * *
8682850 CTGAGTTTACAGCGGAACAGACTGAAGATAACAGATCTTGTCTTCCTGTATTGACAACGAAGCAA
1 CTGAGTTTACAGCGGAACAGACTGAAAACAACAAATCTTGTCTTCCTGTATAGACAACGAAGCAA
*
8682915 ATCGAAGACACCAGCCTTGCCTCT
66 ATCGAAAACACCAGCCTTGCCTCT
* * **
8682939 CTGAGTTTACAGCGGAGCAGACTGAAAACAACAAATCTTGTCTTCTTGTACTAG-CAGTGAAGCA
1 CTGAGTTTACAGCGGAACAGACTGAAAACAACAAATCTTGTCTTCCTGTA-TAGACAACGAAGCA
*
8683003 GATCGAAAACACCAGCCTTG
65 AATCGAAAACACCAGCCTTG
8683023 TCTCCTTGAG
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
89 71 0.97
90 2 0.03
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23
Consensus pattern (89 bp):
CTGAGTTTACAGCGGAACAGACTGAAAACAACAAATCTTGTCTTCCTGTATAGACAACGAAGCAA
ATCGAAAACACCAGCCTTGCCTCT
Found at i:8685256 original size:19 final size:19
Alignment explanation
Indices: 8685234--8685272 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
8685224 AGTCGATCCC
8685234 ATTTTTCA-AAATAAAAATA
1 ATTTTTCACAAA-AAAAATA
*
8685253 ATTTTTTACAAAAAAAATA
1 ATTTTTCACAAAAAAAATA
8685272 A
1 A
8685273 AATAAAATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 15 0.83
20 3 0.17
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (19 bp):
ATTTTTCACAAAAAAAATA
Found at i:8693899 original size:48 final size:48
Alignment explanation
Indices: 8693810--8693903 Score: 120
Period size: 48 Copynumber: 2.0 Consensus size: 48
8693800 TTTCTTGGCT
* * *
8693810 TAAAAACGCCTAAGTCAGCCTAACTTCCACCGATAATGGATTCAACCG
1 TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
*
8693858 TAAAAACGGCTAAGTCAG-CTCAAC-TCGCAACAATAAAGGATTCAAC
1 TAAAAACGCCTAAGTCAGCCT-AACTTC-CAACAATAAAGGATTCAAC
8693904 AGAATTCCCT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
47 4 0.10
48 36 0.90
ACGTcount: A:0.39, C:0.27, G:0.15, T:0.19
Consensus pattern (48 bp):
TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
Found at i:8694430 original size:18 final size:20
Alignment explanation
Indices: 8694407--8694448 Score: 61
Period size: 18 Copynumber: 2.2 Consensus size: 20
8694397 CTCATTATTG
*
8694407 TAATTATTTT-T-ATATTAA
1 TAATTATTTTATAATAGTAA
8694425 TAATTATTTTATAATAGTAA
1 TAATTATTTTATAATAGTAA
8694445 TAAT
1 TAAT
8694449 AAGCTTTAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 10 0.48
19 1 0.05
20 10 0.48
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (20 bp):
TAATTATTTTATAATAGTAA
Found at i:8694445 original size:17 final size:18
Alignment explanation
Indices: 8694406--8694445 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
8694396 TCTCATTATT
*
8694406 GTAATTATTTTTATATTA
1 GTAATTATTTTTATAATA
*
8694424 ATAATTA-TTTTATAATA
1 GTAATTATTTTTATAATA
8694441 GTAAT
1 GTAAT
8694446 AATAAGCTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (18 bp):
GTAATTATTTTTATAATA
Found at i:8706585 original size:28 final size:29
Alignment explanation
Indices: 8706526--8706583 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 29
8706516 AAATATTTTT
* * *
8706526 AATTAATAATTTTGTTATTTATATAAATA
1 AATTAATAATTATGATAGTTATATAAATA
8706555 AATTAATAATTAT-ATAGTTATAT-AATA
1 AATTAATAATTATGATAGTTATATAAATA
8706582 AA
1 AA
8706584 ATATATCATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 6 0.23
28 8 0.31
29 12 0.46
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (29 bp):
AATTAATAATTATGATAGTTATATAAATA
Found at i:8706638 original size:17 final size:18
Alignment explanation
Indices: 8706612--8706650 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
8706602 TATCATTGTG
*
8706612 ATAAATATATTTATTT-T
1 ATAAAAATATTTATTTAT
8706629 ATAAAAATATTTATTTAT
1 ATAAAAATATTTATTTAT
8706647 ATAA
1 ATAA
8706651 TAAAAAAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
ATAAAAATATTTATTTAT
Found at i:8707748 original size:20 final size:21
Alignment explanation
Indices: 8707704--8707748 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
8707694 AACCCTGCTA
* *
8707704 TTTTGATGTGGTTTTTTCATG
1 TTTTGATGTGGTTTTTCCATC
8707725 TTTTGATGTGGTTTTTCCA-C
1 TTTTGATGTGGTTTTTCCATC
8707745 TTTT
1 TTTT
8707749 TGCCATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.09, C:0.09, G:0.20, T:0.62
Consensus pattern (21 bp):
TTTTGATGTGGTTTTTCCATC
Found at i:8707750 original size:21 final size:21
Alignment explanation
Indices: 8707704--8707743 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
8707694 AACCCTGCTA
*
8707704 TTTTGATGTGGTTTTTTCATG
1 TTTTGATGTGGTTTTTCCATG
8707725 TTTTGATGTGGTTTTTCCA
1 TTTTGATGTGGTTTTTCCA
8707744 CTTTTTGCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.10, C:0.07, G:0.23, T:0.60
Consensus pattern (21 bp):
TTTTGATGTGGTTTTTCCATG
Found at i:8708990 original size:10 final size:10
Alignment explanation
Indices: 8708967--8709004 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
8708957 AATTAAAAAT
8708967 TAAAAA-ATA
1 TAAAAATATA
*
8708976 CAAAAATATA
1 TAAAAATATA
*
8708986 TAAAAACATA
1 TAAAAATATA
8708996 TAAAAATAT
1 TAAAAATAT
8709005 TTTAAAATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
9 5 0.21
10 19 0.79
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (10 bp):
TAAAAATATA
Found at i:8709011 original size:20 final size:20
Alignment explanation
Indices: 8708965--8709011 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
8708955 AAAATTAAAA
8708965 ATTAAAAAATACAAAAATAT
1 ATTAAAAAATACAAAAATAT
*
8708985 A-TAAAAACATATAAAAATAT
1 ATTAAAAA-ATACAAAAATAT
*
8709005 TTTAAAA
1 ATTAAAA
8709012 TTTTAAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 6 0.26
20 12 0.52
21 5 0.22
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.28
Consensus pattern (20 bp):
ATTAAAAAATACAAAAATAT
Found at i:8714936 original size:31 final size:31
Alignment explanation
Indices: 8714878--8714936 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 31
8714868 AAACCCTAAA
* * *
8714878 GCCTTAATGTAAGAATAATTGCAAAGTTTAG
1 GCCTCAATGTAAGAACAACTGCAAAGTTTAG
* *
8714909 GCCTCAATGTGAGAACAACTGCCAAGTT
1 GCCTCAATGTAAGAACAACTGCAAAGTT
8714937 CAGGGACTAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 23 1.00
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (31 bp):
GCCTCAATGTAAGAACAACTGCAAAGTTTAG
Found at i:8715958 original size:16 final size:17
Alignment explanation
Indices: 8715931--8715971 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 17
8715921 TGGTAAAGTA
8715931 AATAAA-AAAGT-AAAT
1 AATAAATAAAGTAAAAT
8715946 AATAAATAAAGTAAAAT
1 AATAAATAAAGTAAAAT
8715963 ATATAAATA
1 A-ATAAATA
8715972 TATAATAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.26
16 5 0.22
17 5 0.22
18 7 0.30
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (17 bp):
AATAAATAAAGTAAAAT
Found at i:8720577 original size:12 final size:13
Alignment explanation
Indices: 8720553--8720581 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
8720543 GAGCTATAAC
8720553 TATTGCATTTATT
1 TATTGCATTTATT
8720566 TATTGC-TTTATT
1 TATTGCATTTATT
8720578 TATT
1 TATT
8720582 CATATATGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (13 bp):
TATTGCATTTATT
Found at i:8733597 original size:30 final size:32
Alignment explanation
Indices: 8733561--8733619 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
8733551 TTATAGAGGG
* *
8733561 AAGCCC-TTTT-TTATCTAATAGTTACAAGGC
1 AAGCCCTTTTTCTTATCCAATAGTCACAAGGC
8733591 AAGCCCTTTTTCTTATCCAATAGTCACAA
1 AAGCCCTTTTTCTTATCCAATAGTCACAA
8733620 TTAATCTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 6 0.24
31 4 0.16
32 15 0.60
ACGTcount: A:0.31, C:0.24, G:0.10, T:0.36
Consensus pattern (32 bp):
AAGCCCTTTTTCTTATCCAATAGTCACAAGGC
Found at i:8734046 original size:2 final size:2
Alignment explanation
Indices: 8734039--8734068 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8734029 TCTTCCCATT
8734039 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
8734069 ACACACACAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:8734769 original size:63 final size:62
Alignment explanation
Indices: 8734666--8734826 Score: 225
Period size: 63 Copynumber: 2.5 Consensus size: 62
8734656 TGCACCAGGT
* * *
8734666 GAATCAAATGCCTGCTTTGCAACATCCTTCTGCTCTAAGTTCTGTTTGTTGGAAGGAGGAGGA
1 GAATCAAATGCC-GCTTTGCAACATCCTTCTGCTCTAAGTTATGTTCGTTGGAAGCAGGAGGA
* *
8734729 GAATCAAATGCTCGCTTCGCAACATCCTTCTGTTGC-AAGTTATGTTCGTTGGAAGCAGGAGGA
1 GAATCAAATGC-CGCTTTGCAACATCCTTCTGCT-CTAAGTTATGTTCGTTGGAAGCAGGAGGA
*
8734792 GAATCAAATGCCCGCTTTGCAACATCCTTCCGCTC
1 GAATCAAATG-CCGCTTTGCAACATCCTTCTGCTC
8734827 ATAGCTGTGA
Statistics
Matches: 87, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
62 1 0.01
63 83 0.95
64 3 0.03
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.29
Consensus pattern (62 bp):
GAATCAAATGCCGCTTTGCAACATCCTTCTGCTCTAAGTTATGTTCGTTGGAAGCAGGAGGA
Found at i:8734996 original size:6 final size:6
Alignment explanation
Indices: 8734987--8735017 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
8734977 CCGACTCCCA
8734987 CTACGG CTACGG CTACGG CTACGG CTACGG C
1 CTACGG CTACGG CTACGG CTACGG CTACGG C
8735018 GCCAAGTTCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.16, C:0.35, G:0.32, T:0.16
Consensus pattern (6 bp):
CTACGG
Found at i:8735336 original size:30 final size:31
Alignment explanation
Indices: 8735280--8735393 Score: 95
Period size: 33 Copynumber: 3.6 Consensus size: 31
8735270 CGAAGCCACT
**
8735280 ATCCCTCATACCACCACGACTGCCAAA-ACC
1 ATCCCTCATACCACCACGACCACCAAACACC
* * * *
8735310 ATCTCTCATGCCACCACGCCCACCAAAGCCCCC
1 ATCCCTCATACCACCACGACCACCAAA--CACC
* * *
8735343 ATCCCTCATTCCACCACGGCCACCAAAGCCTCC
1 ATCCCTCATACCACCACGACCACCAAA--CACC
*
8735376 ATCCCTCATTCCACCACG
1 ATCCCTCATACCACCACG
8735394 GCCTCCAGAA
Statistics
Matches: 71, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
30 22 0.31
33 49 0.69
ACGTcount: A:0.26, C:0.51, G:0.08, T:0.15
Consensus pattern (31 bp):
ATCCCTCATACCACCACGACCACCAAACACC
Found at i:8735394 original size:33 final size:33
Alignment explanation
Indices: 8735308--8735396 Score: 142
Period size: 33 Copynumber: 2.7 Consensus size: 33
8735298 ACTGCCAAAA
* * *
8735308 CCATCTCTCATGCCACCACGCCCACCAAAGCCC
1 CCATCCCTCATTCCACCACGGCCACCAAAGCCC
*
8735341 CCATCCCTCATTCCACCACGGCCACCAAAGCCT
1 CCATCCCTCATTCCACCACGGCCACCAAAGCCC
8735374 CCATCCCTCATTCCACCACGGCC
1 CCATCCCTCATTCCACCACGGCC
8735397 TCCAGAATCC
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 52 1.00
ACGTcount: A:0.22, C:0.54, G:0.09, T:0.15
Consensus pattern (33 bp):
CCATCCCTCATTCCACCACGGCCACCAAAGCCC
Found at i:8738087 original size:216 final size:217
Alignment explanation
Indices: 8737696--8738127 Score: 787
Period size: 216 Copynumber: 2.0 Consensus size: 217
8737686 TTCAAATCTT
*
8737696 ATGAATGGTGCTGGAACGTTGTCTCCCTATGCAATTTAATAAACAATCAAAGTCATGAATAATCT
1 ATGAATGGTGCTGAAACGTTGTCTCCCTATGCAATTTAATAAACAATCAAAGTCATGAATAATCT
* * *
8737761 TGAATTGGCAAAATGAATCATTTCTTCACCATTAAAACAAAGACAGCTCTTCAAATATTGTAATG
66 TAAATTGGCAAAATGAATCATTTCTTCACCATTAAAACAAAAACAACTCTTCAAATATTGTAATG
8737826 GAAGAACAATTAAGTGAGAATTAAAAAGAACAAGGCACAAAGCAAGAGATTTTCAAAAAATGATA
131 GAAGAACAATTAAGTGAGAATTAAAAAGAACAAGGCACAAAGCAAGAGATTTTCAAAAAATGATA
8737891 TTTATCCAACCCCCTTCCCCTC
196 TTTATCCAACCCCCTTCCCCTC
*
8737913 ATGAATGGTGCTGAAACGTTGTCTCCCTATGCAATTTAATAAA-AGTCAAAGTCATGAATAATCT
1 ATGAATGGTGCTGAAACGTTGTCTCCCTATGCAATTTAATAAACAATCAAAGTCATGAATAATCT
8737977 TAAATTGGCAAAATGAA-CATTTCTTCACCATTAAAACAAAAACAACTCTTCAAATATTGTAATG
66 TAAATTGGCAAAATGAATCATTTCTTCACCATTAAAACAAAAACAACTCTTCAAATATTGTAATG
*
8738041 GAAGAACAATTAAGTGAGAAATTAAAAAGAACAAGGCGCAAAGCAAGAGATTTTCAAAAAATGAT
131 GAAGAACAATTAAGTGAG-AATTAAAAAGAACAAGGCACAAAGCAAGAGATTTTCAAAAAATGAT
8738106 ATTTATCCAACCCCCTTCCCCT
195 ATTTATCCAACCCCCTTCCCCT
8738128 TCAGCAGTTT
Statistics
Matches: 208, Mismatches: 6, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
215 63 0.30
216 103 0.50
217 42 0.20
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.27
Consensus pattern (217 bp):
ATGAATGGTGCTGAAACGTTGTCTCCCTATGCAATTTAATAAACAATCAAAGTCATGAATAATCT
TAAATTGGCAAAATGAATCATTTCTTCACCATTAAAACAAAAACAACTCTTCAAATATTGTAATG
GAAGAACAATTAAGTGAGAATTAAAAAGAACAAGGCACAAAGCAAGAGATTTTCAAAAAATGATA
TTTATCCAACCCCCTTCCCCTC
Found at i:8741484 original size:392 final size:392
Alignment explanation
Indices: 8740549--8741722 Score: 2212
Period size: 390 Copynumber: 3.0 Consensus size: 392
8740539 ATTTTTCAAT
8740549 CAGTAGCAATTCAGACTACTAGTCATATATCAATTAATAAGACCCTAAAACAAGAATTACATAAA
1 CAGTAGCAATTCAGACTACTAGTCATATATCAATTAATAAGACCCTAAAACAAGAATTACATAAA
8740614 CAAAGAAACAAGATAATTGAATCTGACATCCAATACACCAAATAGCATTGGTAATACAATTATAC
66 CAAAGAAACAAGATAATTGAATCTGACATCCAATACACCAAATAGCATTGGTAATACAATTATAC
*
8740679 ATACAAGAGAAAGTGAAAATGGACAATCCTATTATTGAACAACAAATCTCAAGTAAAACCTTTTT
131 ATACAAGAGAAAGTGAAAATGGACAAGCCTATTATTGAACAACAAATCTCAAGTAAAACCTTTTT
* * *
8740744 TTCCCTTACCATACATA-ATGGGAGGGTAGAAAACAACAGAACAGCAATTCCTTAATTAAAAGAG
196 TTCCCTTCCCATACTTACATGGGAGGGGAGAAAACAACAGAACAGCAATTCCTTAATTAAAAGAG
* *
8740808 CCAATCAAAACAGATGATAAGATAATCCAAAAAGGGAATCCTATAAGCAAACCACATGGTCAAGA
261 TCAATCAAAAGAGATGATAAGATAATCCAAAAAGGGAATCCTATAAGCAAACCACATGGTCAAGA
*
8740873 AAGAGGCTTCTATCTTCGTTGCTCAAAACCAAAA-CCCCATGAAATAAACAAAAAGGAACAAGAA
326 AAGAGGCTTCTATCTTTGTTGCTCAAAACCAAAACCCCCATGAAATAAACAAAAAGGAACAAGAA
8740937 AA
391 AA
8740939 CAGTAGCAATTCAGACTACTAGTCATATATCAATTAATAAGACCCTAAAACAAGAATTACATAAA
1 CAGTAGCAATTCAGACTACTAGTCATATATCAATTAATAAGACCCTAAAACAAGAATTACATAAA
8741004 CAAAGAAACAAGATAATTGAATCTGACATCCAATACACCAAATAGCATTGGTAATACAATTATAC
66 CAAAGAAACAAGATAATTGAATCTGACATCCAATACACCAAATAGCATTGGTAATACAATTATAC
8741069 ATACAAGAGAAAGTGAAAATGGACAAGCCTATTATTGAACAACAAATCTCAAGTAAAACCTTTTT
131 ATACAAGAGAAAGTGAAAATGGACAAGCCTATTATTGAACAACAAATCTCAAGTAAAACCTTTTT
*
8741134 TTCCCTTCCCATACTTACATGGGAGGGGAGAAAGCAACAGAACAGCAATTCCTTAATTAAAAGAG
196 TTCCCTTCCCATACTTACATGGGAGGGGAGAAAACAACAGAACAGCAATTCCTTAATTAAAAGAG
8741199 TCAATCAAAAGAGATGATAAGATAATCCAAAAAGGGAATCCTATAAGCAAACCACATGGTCAAGA
261 TCAATCAAAAGAGATGATAAGATAATCCAAAAAGGGAATCCTATAAGCAAACCACATGGTCAAGA
8741264 AAGAGGCTTCTATCTTTGTTGCTCAAAACCAAAACCCCCATGAAATAAACAAAAAGGAACAAGAA
326 AAGAGGCTTCTATCTTTGTTGCTCAAAACCAAAACCCCCATGAAATAAACAAAAAGGAACAAGAA
8741329 AA
391 AA
*
8741331 CAGTAGCAATTCAGACTACTAGTCATATATCAATTAATAAGACCCTAAAATAAGAATTACATAAA
1 CAGTAGCAATTCAGACTACTAGTCATATATCAATTAATAAGACCCTAAAACAAGAATTACATAAA
*
8741396 CAAAGAAACAAGATAATTGAATCTGACATCCAATACACCAAATGGCATTGGTAATACAATTATAC
66 CAAAGAAACAAGATAATTGAATCTGACATCCAATACACCAAATAGCATTGGTAATACAATTATAC
*
8741461 ATACAAGAGAAAGTGAAAATGGACAAGCCTATTATTGAACAACAAATCTCAAGTAAAACCTTCTT
131 ATACAAGAGAAAGTGAAAATGGACAAGCCTATTATTGAACAACAAATCTCAAGTAAAACCTTTTT
*
8741526 TTCCCTTCCCATACTTACATGGGATGGGAGAAAACAACAGAACAGCAATTCCTTAATT-AAA-AG
196 TTCCCTTCCCATACTTACATGGGAGGGGAGAAAACAACAGAACAGCAATTCCTTAATTAAAAGAG
8741589 TCAATCAAAAGAGATGATAAGATAATCCAAAAAGGGAATCCTATAAGCAAACCACATGGTCAAGA
261 TCAATCAAAAGAGATGATAAGATAATCCAAAAAGGGAATCCTATAAGCAAACCACATGGTCAAGA
8741654 AAGAGGCTTCTATCTTTGTTGCTCAAAACCAAAACCCCCATGAAATAAACAAAAAGGAACAAGAA
326 AAGAGGCTTCTATCTTTGTTGCTCAAAACCAAAACCCCCATGAAATAAACAAAAAGGAACAAGAA
8741719 AA
391 AA
8741721 CA
1 CA
8741723 ATAGAGAAAA
Statistics
Matches: 769, Mismatches: 13, Indels: 4
0.98 0.02 0.01
Matches are distributed among these distances:
390 345 0.45
391 144 0.19
392 280 0.36
ACGTcount: A:0.46, C:0.19, G:0.14, T:0.21
Consensus pattern (392 bp):
CAGTAGCAATTCAGACTACTAGTCATATATCAATTAATAAGACCCTAAAACAAGAATTACATAAA
CAAAGAAACAAGATAATTGAATCTGACATCCAATACACCAAATAGCATTGGTAATACAATTATAC
ATACAAGAGAAAGTGAAAATGGACAAGCCTATTATTGAACAACAAATCTCAAGTAAAACCTTTTT
TTCCCTTCCCATACTTACATGGGAGGGGAGAAAACAACAGAACAGCAATTCCTTAATTAAAAGAG
TCAATCAAAAGAGATGATAAGATAATCCAAAAAGGGAATCCTATAAGCAAACCACATGGTCAAGA
AAGAGGCTTCTATCTTTGTTGCTCAAAACCAAAACCCCCATGAAATAAACAAAAAGGAACAAGAA
AA
Found at i:8743675 original size:18 final size:18
Alignment explanation
Indices: 8743637--8743675 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
8743627 ATTACTTCTC
* *
8743637 AAAAGCACTTTTGGGACA
1 AAAAACACTTTTGAGACA
*
8743655 AAAAACACTTTTGAGATA
1 AAAAACACTTTTGAGACA
8743673 AAA
1 AAA
8743676 GTATTGATAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.49, C:0.13, G:0.15, T:0.23
Consensus pattern (18 bp):
AAAAACACTTTTGAGACA
Found at i:8743816 original size:17 final size:18
Alignment explanation
Indices: 8743769--8743808 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
8743759 GCTTTTACTT
* *
8743769 AAAAGTACTTTTTGGCCC
1 AAAAATACTTTCTGGCCC
8743787 AAAAATACTTTCTGGCCC
1 AAAAATACTTTCTGGCCC
8743805 AAAA
1 AAAA
8743809 GTGCTTCTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.28
Consensus pattern (18 bp):
AAAAATACTTTCTGGCCC
Found at i:8746574 original size:15 final size:15
Alignment explanation
Indices: 8746556--8746598 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
8746546 ACCCTATGGC
8746556 GAACTCCCTTATGAT
1 GAACTCCCTTATGAT
* *
8746571 GAACTCTCC-TACGGT
1 GAACTC-CCTTATGAT
8746586 GAACTCCCTTATG
1 GAACTCCCTTATG
8746599 GCAAACTCAC
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
14 2 0.09
15 19 0.83
16 2 0.09
ACGTcount: A:0.23, C:0.30, G:0.16, T:0.30
Consensus pattern (15 bp):
GAACTCCCTTATGAT
Found at i:8746592 original size:30 final size:30
Alignment explanation
Indices: 8746548--8746685 Score: 111
Period size: 30 Copynumber: 4.7 Consensus size: 30
8746538 TGTGCATAAC
* * *
8746548 CCTATGGCGAACTCCCTTATGATGAACTCT
1 CCTACGGCGAACTCCCTTATGGTGAACTCA
* **
8746578 CCTACGGTGAACTCCCTTATGGCAAACTCA
1 CCTACGGCGAACTCCCTTATGGTGAACTCA
*
8746608 CCTATGGCGAACTCCC-TATGGTGAACTCA
1 CCTACGGCGAACTCCCTTATGGTGAACTCA
* ** * * *
8746637 CATGTGGCAAACT-ACTCTATGGAGAACTC-
1 CCTACGGCGAACTCCCT-TATGGTGAACTCA
* *
8746666 CCTATGGCGAACTCACTTAT
1 CCTACGGCGAACTCCCTTAT
8746686 CGTTGATCTG
Statistics
Matches: 87, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
28 1 0.01
29 34 0.39
30 52 0.60
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (30 bp):
CCTACGGCGAACTCCCTTATGGTGAACTCA
Found at i:8746605 original size:15 final size:14
Alignment explanation
Indices: 8746587--8746679 Score: 71
Period size: 15 Copynumber: 6.4 Consensus size: 14
8746577 TCCTACGGTG
8746587 AACTCCCTTATGGCA
1 AACTCCC-TATGGCA
*
8746602 AACTCACCTATGGCG
1 AACTC-CCTATGGCA
**
8746617 AACTCCCTATGGTG
1 AACTCCCTATGGCA
* *
8746631 AACTCACATGTGGCA
1 AACTC-CCTATGGCA
*
8746646 AACTACTCTATGG-A
1 AACT-CCCTATGGCA
*
8746660 GAACTCCCTATGGCG
1 -AACTCCCTATGGCA
8746675 AACTC
1 AACTC
8746680 ACTTATCGTT
Statistics
Matches: 62, Mismatches: 11, Indels: 11
0.74 0.13 0.13
Matches are distributed among these distances:
14 26 0.42
15 33 0.53
16 3 0.05
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (14 bp):
AACTCCCTATGGCA
Found at i:8746645 original size:44 final size:44
Alignment explanation
Indices: 8746571--8746681 Score: 143
Period size: 44 Copynumber: 2.5 Consensus size: 44
8746561 CCCTTATGAT
* * * *
8746571 GAACTCTCCTACGGTGAACTCCCTTATGGCAAACTCAC-CTATGGC
1 GAACTC-CCTATGGTGAACTCACATATGGCAAACT-ACTCTATGGA
*
8746616 GAACTCCCTATGGTGAACTCACATGTGGCAAACTACTCTATGGA
1 GAACTCCCTATGGTGAACTCACATATGGCAAACTACTCTATGGA
*
8746660 GAACTCCCTATGGCGAACTCAC
1 GAACTCCCTATGGTGAACTCAC
8746682 TTATCGTTGA
Statistics
Matches: 59, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
43 2 0.03
44 51 0.86
45 6 0.10
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (44 bp):
GAACTCCCTATGGTGAACTCACATATGGCAAACTACTCTATGGA
Found at i:8765481 original size:18 final size:17
Alignment explanation
Indices: 8765449--8765482 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
8765439 AACTATCGTT
8765449 CTTCCACCTTTCATATC
1 CTTCCACCTTTCATATC
*
8765466 CTTCCCCCTATTCATAT
1 CTTCCACCT-TTCATAT
8765483 GCAACATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.18, C:0.41, G:0.00, T:0.41
Consensus pattern (17 bp):
CTTCCACCTTTCATATC
Found at i:8766930 original size:17 final size:17
Alignment explanation
Indices: 8766908--8766941 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
8766898 ATAAATGGAA
8766908 AGAGTGAAATTTGAACC
1 AGAGTGAAATTTGAACC
8766925 AGAGTGAAATTTGAACC
1 AGAGTGAAATTTGAACC
8766942 TATGCTCTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.24, T:0.24
Consensus pattern (17 bp):
AGAGTGAAATTTGAACC
Found at i:8767613 original size:29 final size:29
Alignment explanation
Indices: 8767570--8767666 Score: 86
Period size: 29 Copynumber: 3.3 Consensus size: 29
8767560 GTACATAGTA
*
8767570 CCTGATAAATATAACATTGGCACAGAGTG
1 CCTGATAAATATAACATTGGCACAAAGTG
* * * * *
8767599 CCTGATAATTGTAACATCGGTACAAAGTA
1 CCTGATAAATATAACATTGGCACAAAGTG
* * * *
8767628 TCTGATAAATCTAACCATTGACACATAGTG
1 CCTGATAAATATAA-CATTGGCACAAAGTG
*
8767658 CCTAATAAA
1 CCTGATAAA
8767667 CACTAATGAC
Statistics
Matches: 51, Mismatches: 16, Indels: 1
0.75 0.24 0.01
Matches are distributed among these distances:
29 34 0.67
30 17 0.33
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.27
Consensus pattern (29 bp):
CCTGATAAATATAACATTGGCACAAAGTG
Found at i:8771600 original size:144 final size:144
Alignment explanation
Indices: 8771340--8771627 Score: 576
Period size: 144 Copynumber: 2.0 Consensus size: 144
8771330 ATAAAAAAAC
8771340 ACCAAGGAAGATTGCATTCAACCAAGCTAATAATTAAGGTAATTTAAACATTTTTCTTGTAATTT
1 ACCAAGGAAGATTGCATTCAACCAAGCTAATAATTAAGGTAATTTAAACATTTTTCTTGTAATTT
8771405 TTATAGATTTATGGTTATGGGAGCTTGATTTAGCTAGCTCATGTATCAATTTGATCAATTTTTAA
66 TTATAGATTTATGGTTATGGGAGCTTGATTTAGCTAGCTCATGTATCAATTTGATCAATTTTTAA
8771470 AGTTTTAGCAAGTT
131 AGTTTTAGCAAGTT
8771484 ACCAAGGAAGATTGCATTCAACCAAGCTAATAATTAAGGTAATTTAAACATTTTTCTTGTAATTT
1 ACCAAGGAAGATTGCATTCAACCAAGCTAATAATTAAGGTAATTTAAACATTTTTCTTGTAATTT
8771549 TTATAGATTTATGGTTATGGGAGCTTGATTTAGCTAGCTCATGTATCAATTTGATCAATTTTTAA
66 TTATAGATTTATGGTTATGGGAGCTTGATTTAGCTAGCTCATGTATCAATTTGATCAATTTTTAA
8771614 AGTTTTAGCAAGTT
131 AGTTTTAGCAAGTT
8771628 GCCATTATTT
Statistics
Matches: 144, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
144 144 1.00
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.40
Consensus pattern (144 bp):
ACCAAGGAAGATTGCATTCAACCAAGCTAATAATTAAGGTAATTTAAACATTTTTCTTGTAATTT
TTATAGATTTATGGTTATGGGAGCTTGATTTAGCTAGCTCATGTATCAATTTGATCAATTTTTAA
AGTTTTAGCAAGTT
Found at i:8780074 original size:57 final size:56
Alignment explanation
Indices: 8780013--8780131 Score: 150
Period size: 57 Copynumber: 2.1 Consensus size: 56
8780003 GGTGAAATGG
*
8780013 TGAAATGG-GAAAATAGGAAACATTTGGAAATGATTATAGTGTTCTCCAAAATGAAAA
1 TGAAATGGAG-AAAT-GGAAACATTTCGAAATGATTATAGTGTTCTCCAAAATGAAAA
** * * *
8780070 TGAAAATGGAGAAATGGAGTCATTTCGAAATTATTATAGTTTTCTTCAAAATGAAAA
1 TG-AAATGGAGAAATGGAAACATTTCGAAATGATTATAGTGTTCTCCAAAATGAAAA
8780127 TGAAA
1 TGAAA
8780132 ATGAAAATGA
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
56 3 0.06
57 40 0.74
58 10 0.19
59 1 0.02
ACGTcount: A:0.45, C:0.07, G:0.19, T:0.29
Consensus pattern (56 bp):
TGAAATGGAGAAATGGAAACATTTCGAAATGATTATAGTGTTCTCCAAAATGAAAA
Done.