Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 33 of 222
Found at i:9865617 original size:19 final size:20
Alignment explanation
Indices: 9865583--9865620 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
9865573 TATTATAAAT
9865583 TATTATAAATTGTAAAAAAC
1 TATTATAAATTGTAAAAAAC
*
9865603 TATTA-AAATTTTAAAAAA
1 TATTATAAATTGTAAAAAA
9865621 TAGTCAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.37
Consensus pattern (20 bp):
TATTATAAATTGTAAAAAAC
Found at i:9865629 original size:18 final size:19
Alignment explanation
Indices: 9865589--9865631 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
9865579 AAATTATTAT
* *
9865589 AAATTGTAAAAAACTATTA
1 AAATTTTAAAAAACTAGTA
*
9865608 AAATTTTAAAAAA-TAGTC
1 AAATTTTAAAAAACTAGTA
9865626 AAATTT
1 AAATTT
9865632 GTTGTATCTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.35
Consensus pattern (19 bp):
AAATTTTAAAAAACTAGTA
Found at i:9865733 original size:11 final size:11
Alignment explanation
Indices: 9865719--9865803 Score: 59
Period size: 11 Copynumber: 7.7 Consensus size: 11
9865709 TATACCAAAA
9865719 AATATTTTAAT
1 AATATTTTAAT
*
9865730 AATAATTTAAT
1 AATATTTTAAT
9865741 ACAT-TTTTAAAT
1 A-ATATTTT-AAT
*
9865753 TATATATTTAAT
1 AATAT-TTTAAT
*** *
9865765 AATA-CCAAAA
1 AATATTTTAAT
9865775 AATATTTTAAT
1 AATATTTTAAT
*
9865786 AATAATTTAAT
1 AATATTTTAAT
9865797 -ATATTTT
1 AATATTTT
9865804 TTAAATTATA
Statistics
Matches: 55, Mismatches: 14, Indels: 11
0.69 0.17 0.14
Matches are distributed among these distances:
10 12 0.22
11 28 0.51
12 12 0.22
13 3 0.05
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (11 bp):
AATATTTTAAT
Found at i:9868421 original size:21 final size:22
Alignment explanation
Indices: 9868395--9868437 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
9868385 GAATTGAATT
9868395 TAAAGTTATGAAT-TAT-ATATA
1 TAAAGTT-TGAATGTATGATATA
9868416 TAAAGTTTGAATGTATGATATA
1 TAAAGTTTGAATGTATGATATA
9868438 AGTTCTTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 5 0.25
21 10 0.50
22 5 0.25
ACGTcount: A:0.44, C:0.00, G:0.14, T:0.42
Consensus pattern (22 bp):
TAAAGTTTGAATGTATGATATA
Found at i:9868436 original size:20 final size:21
Alignment explanation
Indices: 9868395--9868438 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
9868385 GAATTGAATT
*
9868395 TAAAGTTATGAATTATATATA
1 TAAAGTTATGAATTATAGATA
9868416 TAAAGTT-TGAATGTAT-GATA
1 TAAAGTTATGAAT-TATAGATA
9868436 TAA
1 TAA
9868439 GTTCTTTGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (21 bp):
TAAAGTTATGAATTATAGATA
Found at i:9868571 original size:63 final size:62
Alignment explanation
Indices: 9868432--9868589 Score: 196
Period size: 63 Copynumber: 2.5 Consensus size: 62
9868422 TTGAATGTAT
* *
9868432 GATAT-AAGTTCTTTGAGCTGAATTTAATGTATGAATTTTACATACATATGGTTCGAATATA
1 GATATCAAATTCTTTGAGCTGAATTTAATGTATGAATTTCACATACATATGGTTCGAATATA
* *
9868493 TATATTTCAAGTTC-TTGAGCTGAATTTAATGTATGAATTTCACATACATATGTGGTTCGAATAT
1 GATA--TCAAATTCTTTGAGCTGAATTTAATGTATGAATTTCACATACATA--TGGTTCGAATAT
9868557 A
62 A
*
9868558 GGCTA-CAAATTCTTTGAGCTGAATTTTAATGT
1 -GATATCAAATTCTTTGAGCTGAA-TTTAATGT
9868590 TGTAAATTAT
Statistics
Matches: 84, Mismatches: 5, Indels: 12
0.83 0.05 0.12
Matches are distributed among these distances:
61 3 0.04
63 42 0.50
64 16 0.19
65 21 0.25
66 2 0.02
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.41
Consensus pattern (62 bp):
GATATCAAATTCTTTGAGCTGAATTTAATGTATGAATTTCACATACATATGGTTCGAATATA
Found at i:9868789 original size:41 final size:41
Alignment explanation
Indices: 9868732--9868888 Score: 183
Period size: 41 Copynumber: 3.8 Consensus size: 41
9868722 TTTGAGATTT
* * * * *
9868732 TCAGGCTTAATGCCTAGCAGACTTGATGTCGGTGGATTACA
1 TCAGGCTTTATGCCTAGCAGGCTTGATGCCGGTGAATTATA
9868773 TCAGGCTTTATGCCTAGCAGGCTT-AGTGCCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTGA-TGCCGGTGAATTATA
* * * *
9868814 TCAGACTTTATGTCTAGCAGGCTTTG-TGCCGGTGAAATGTA
1 TCAGGCTTTATGCCTAGCAGGC-TTGATGCCGGTGAATTATA
* *
9868855 TCAGGCTTTGTGCCTAGCAGGCTTTATGCCGGTG
1 TCAGGCTTTATGCCTAGCAGGCTTGATGCCGGTG
9868889 TTTTATACAA
Statistics
Matches: 99, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
40 3 0.03
41 94 0.95
42 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.32
Consensus pattern (41 bp):
TCAGGCTTTATGCCTAGCAGGCTTGATGCCGGTGAATTATA
Found at i:9868902 original size:41 final size:40
Alignment explanation
Indices: 9868733--9868907 Score: 149
Period size: 41 Copynumber: 4.3 Consensus size: 40
9868723 TTGAGATTTT
* * * * *
9868733 CAGGCTTAATGCCTAGCAGACTTGATGTCGGTGGA-TTACA
1 CAGGCTTTATGCCTAGCAGGCTTTATGCCGGT-GATTTATA
*
9868773 TCAGGCTTTATGCCTAGCAGGC-TTAGTGCCGGTGAATTATA
1 -CAGGCTTTATGCCTAGCAGGCTTTA-TGCCGGTGATTTATA
* * * *
9868814 TCAGACTTTATGTCTAGCAGGCTTTGTGCCGGTGAAATGTAT-
1 -CAGGCTTTATGCCTAGCAGGCTTTATGCCGGTG--ATTTATA
* *
9868856 CAGGCTTTGTGCCTAGCAGGCTTTATGCCGGTGTTTTATA
1 CAGGCTTTATGCCTAGCAGGCTTTATGCCGGTGATTTATA
*
9868896 CAAGGCTCTATG
1 C-AGGCTTTATG
9868908 TTCTATAAAT
Statistics
Matches: 109, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
39 4 0.04
40 5 0.05
41 94 0.86
42 2 0.02
43 4 0.04
ACGTcount: A:0.21, C:0.19, G:0.27, T:0.33
Consensus pattern (40 bp):
CAGGCTTTATGCCTAGCAGGCTTTATGCCGGTGATTTATA
Found at i:9870664 original size:21 final size:21
Alignment explanation
Indices: 9870640--9870707 Score: 86
Period size: 21 Copynumber: 3.3 Consensus size: 21
9870630 ATGTTTTACT
*
9870640 TTCTATTCAGCTCTTACGAGC
1 TTCTGTTCAGCTCTTACGAGC
*
9870661 TTCTGTTTAGCTCTTACGAGC
1 TTCTGTTCAGCTCTTACGAGC
* *
9870682 TTCTGTTCAACT-TT-TGAGC
1 TTCTGTTCAGCTCTTACGAGC
9870701 TTCTGTT
1 TTCTGTT
9870708 GGCGTATTCG
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
19 11 0.26
20 2 0.05
21 29 0.69
ACGTcount: A:0.15, C:0.24, G:0.16, T:0.46
Consensus pattern (21 bp):
TTCTGTTCAGCTCTTACGAGC
Found at i:9870905 original size:21 final size:21
Alignment explanation
Indices: 9870879--9870927 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
9870869 AATAGAAGTT
9870879 GTGAATGACAAGAAATTGACA
1 GTGAATGACAAGAAATTGACA
* *
9870900 GTGAATGACAGGGAATTGACA
1 GTGAATGACAAGAAATTGACA
9870921 -TGAATGA
1 GTGAATGA
9870928 TTTTATTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 7 0.27
21 19 0.73
ACGTcount: A:0.43, C:0.08, G:0.29, T:0.20
Consensus pattern (21 bp):
GTGAATGACAAGAAATTGACA
Found at i:9872380 original size:20 final size:21
Alignment explanation
Indices: 9872357--9872410 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
9872347 ATTTTCTATT
9872357 TTTTAATAATTTTTTT-AAAA
1 TTTTAATAATTTTTTTGAAAA
*
9872377 TTTTAA-ATATTTTTTTGTAAA
1 TTTTAATA-ATTTTTTTGAAAA
9872398 TTTTAAT-ATTTTT
1 TTTTAATAATTTTT
9872411 ATTTTTGAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
19 1 0.03
20 20 0.67
21 9 0.30
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (21 bp):
TTTTAATAATTTTTTTGAAAA
Found at i:9873024 original size:11 final size:11
Alignment explanation
Indices: 9873008--9873034 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
9872998 GCTGTCTATC
9873008 TTTCTATTTCT
1 TTTCTATTTCT
9873019 TTTCTATTTCT
1 TTTCTATTTCT
9873030 TTTCT
1 TTTCT
9873035 TTACCTTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.07, C:0.19, G:0.00, T:0.74
Consensus pattern (11 bp):
TTTCTATTTCT
Found at i:9873287 original size:19 final size:20
Alignment explanation
Indices: 9873249--9873287 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
9873239 AATTTCTTTG
9873249 GATCTTGCCAAATCCTTGAT
1 GATCTTGCCAAATCCTTGAT
9873269 GATCTTGCCAAAT-CTTGAT
1 GATCTTGCCAAATCCTTGAT
9873288 ACCAATCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (20 bp):
GATCTTGCCAAATCCTTGAT
Found at i:9876512 original size:22 final size:24
Alignment explanation
Indices: 9876469--9876512 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
9876459 TAACTAAGCT
9876469 TACTTACTTTTCTAGCTTAATTCA
1 TACTTACTTTTCTAGCTTAATTCA
*
9876493 TACTT-CTTTTCT-TCTTAATT
1 TACTTACTTTTCTAGCTTAATT
9876513 TCTTGCCATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
23 7 0.37
24 5 0.26
ACGTcount: A:0.20, C:0.20, G:0.02, T:0.57
Consensus pattern (24 bp):
TACTTACTTTTCTAGCTTAATTCA
Found at i:9876899 original size:18 final size:19
Alignment explanation
Indices: 9876878--9876913 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
9876868 GTTTTCGTTT
9876878 TGTTC-TCTGTTTCTTTTC
1 TGTTCTTCTGTTTCTTTTC
*
9876896 TGTTCTTTTGTTTCTTTT
1 TGTTCTTCTGTTTCTTTT
9876914 TCTTTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.00, C:0.17, G:0.11, T:0.72
Consensus pattern (19 bp):
TGTTCTTCTGTTTCTTTTC
Found at i:9879522 original size:72 final size:71
Alignment explanation
Indices: 9879397--9879631 Score: 267
Period size: 72 Copynumber: 3.3 Consensus size: 71
9879387 CGCTGGCCAC
* * *
9879397 TAAAACCGACAAATGAGTGTG-TCAGCACTGGTCGGTATAACCAAAAAATAAATGCGCCCTGTGC
1 TAAAACTGACAAATGAGTGTGCCCAGCACTGGTCGGTATAACC-AAAAATAAATGCGCCCTGCGC
*
9879461 TAGTTAG
65 TAGTCAG
* * *
9879468 TAAAACTGAAAAATGAGTGTGCCCAGAACTGGTCGGTATAACCAAAAAGTAAATGCGCCTTGCGC
1 TAAAACTGACAAATGAGTGTGCCCAGCACTGGTCGGTATAACCAAAAA-TAAATGCGCCCTGCGC
* *
9879533 TGGTCGG
65 TAGTCAG
* * *
9879540 TAAAACAT-ACAAATGAGTGTGCCTAGCACTGGCCGGTATAACCGAAAAATAAATGAGCCCTGCG
1 TAAAAC-TGACAAATGAGTGTGCCCAGCACTGGTCGGTATAACC-AAAAATAAATGCGCCCTGCG
* *
9879604 CTGGCCAG
64 CTAGTCAG
* **
9879612 TGAAACCAACAAATGAGTGT
1 TAAAACTGACAAATGAGTGT
9879632 TCATTCATTT
Statistics
Matches: 140, Mismatches: 19, Indels: 9
0.83 0.11 0.05
Matches are distributed among these distances:
71 24 0.17
72 110 0.79
73 6 0.04
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.20
Consensus pattern (71 bp):
TAAAACTGACAAATGAGTGTGCCCAGCACTGGTCGGTATAACCAAAAATAAATGCGCCCTGCGCT
AGTCAG
Found at i:9879609 original size:36 final size:36
Alignment explanation
Indices: 9879424--9879607 Score: 120
Period size: 36 Copynumber: 5.1 Consensus size: 36
9879414 TGTGTCAGCA
* *
9879424 CTGGTCGGTATAACCAAAAAATAAATGCGCCCTGTG
1 CTGGTCGGTATAACCGAAAAATAAATGCGCCCTGCG
* ** * * * * * * **
9879460 CTAGTTAGTAAAACTGAAAAATGAGTGTGCCCAGAA
1 CTGGTCGGTATAACCGAAAAATAAATGCGCCCTGCG
*
9879496 CTGGTCGGTATAACC-AAAAAGTAAATGCGCCTTGCG
1 CTGGTCGGTATAACCGAAAAA-TAAATGCGCCCTGCG
* ** * * * * *
9879532 CTGGTCGGTAAAACATACAAATGAGTGTG-CCTAGCA
1 CTGGTCGGTATAACCGAAAAATAAATGCGCCCT-GCG
* *
9879568 CTGGCCGGTATAACCGAAAAATAAATGAGCCCTGCG
1 CTGGTCGGTATAACCGAAAAATAAATGCGCCCTGCG
9879604 CTGG
1 CTGG
9879608 CCAGTGAAAC
Statistics
Matches: 103, Mismatches: 41, Indels: 8
0.68 0.27 0.05
Matches are distributed among these distances:
35 7 0.07
36 89 0.86
37 7 0.07
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (36 bp):
CTGGTCGGTATAACCGAAAAATAAATGCGCCCTGCG
Found at i:9880213 original size:22 final size:23
Alignment explanation
Indices: 9880134--9880226 Score: 107
Period size: 23 Copynumber: 4.1 Consensus size: 23
9880124 AAATGTCTAC
* *
9880134 TTGGACAACACTTAAAACATGCT
1 TTGGACAACATTTAAAACATACT
** *
9880157 TTGGATGACATTTAAAACATATT
1 TTGGACAACATTTAAAACATACT
*
9880180 TTGGACAACATTTAAAACTTACT
1 TTGGACAACATTTAAAACATACT
* *
9880203 TT-GACAGCATTTGAAACATACT
1 TTGGACAACATTTAAAACATACT
9880225 TT
1 TT
9880227 TGCTGGCACT
Statistics
Matches: 58, Mismatches: 12, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
22 19 0.33
23 39 0.67
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34
Consensus pattern (23 bp):
TTGGACAACATTTAAAACATACT
Found at i:9889297 original size:16 final size:16
Alignment explanation
Indices: 9889276--9889308 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
9889266 CGCTGTATTG
9889276 GAATAGAGGCGTAATA
1 GAATAGAGGCGTAATA
9889292 GAATAGAGGCGTAATA
1 GAATAGAGGCGTAATA
9889308 G
1 G
9889309 CAATTCAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.06, G:0.33, T:0.18
Consensus pattern (16 bp):
GAATAGAGGCGTAATA
Found at i:9889381 original size:44 final size:45
Alignment explanation
Indices: 9889286--9889382 Score: 119
Period size: 45 Copynumber: 2.2 Consensus size: 45
9889276 GAATAGAGGC
* *
9889286 GTAATAGAATAGAGGCGTAATAGCAATTCAATTGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATAGCAATTCAATTGTTTGGTTAAAT
* *
9889331 GTAATGGAATAGAGGCGTAATAG-TATTC-TTGTGTTTGGTTAAAT
1 GTAATGGAATAGAGGCGTAATAGCAATTCAAT-TGTTTGGTTAAAT
9889375 AG-AATGGA
1 -GTAATGGA
9889383 GGTGTAATAG
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
43 1 0.02
44 22 0.48
45 23 0.50
ACGTcount: A:0.34, C:0.05, G:0.27, T:0.34
Consensus pattern (45 bp):
GTAATGGAATAGAGGCGTAATAGCAATTCAATTGTTTGGTTAAAT
Found at i:9889564 original size:26 final size:28
Alignment explanation
Indices: 9889496--9889564 Score: 76
Period size: 26 Copynumber: 2.6 Consensus size: 28
9889486 TATTAATATC
*
9889496 AATAATAAATAATTT-AATCATATTTTA
1 AATAATATATAATTTAAATCATATTTTA
*
9889523 ACATAAT-TATTA-TTAAAT-ATATTTT-
1 A-ATAATATATAATTTAAATCATATTTTA
9889548 AATAATATATAATTTAA
1 AATAATATATAATTTAA
9889565 TAAAATTCTT
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
24 5 0.14
25 5 0.14
26 13 0.37
27 7 0.20
28 5 0.14
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (28 bp):
AATAATATATAATTTAAATCATATTTTA
Found at i:9889677 original size:18 final size:17
Alignment explanation
Indices: 9889656--9889690 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
9889646 TTATTATTAA
*
9889656 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
9889674 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
9889691 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:9889729 original size:120 final size:120
Alignment explanation
Indices: 9889519--9890075 Score: 1032
Period size: 120 Copynumber: 4.7 Consensus size: 120
9889509 TTAATCATAT
9889519 TTTAACATAATTATTATTAAATATATTTTAA-T--AATATATAATTTAATAAAATTCTTAATAAT
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
9889581 CAATATTCTTATATAAATTTACTAAAATCATAATATATGATACTATAAAATATAA
66 CAATATTCTTATATAAATTTACTAAAATCATAATATATGATACTATAAAATATAA
9889636 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
9889701 CAATATTCTTATATAAATTTACTAAAATCATAATATATGATACTATAAAATATAA
66 CAATATTCTTATATAAATTTACTAAAATCATAATATATGATACTATAAAATATAA
9889756 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
* *
9889821 CAATATTCTTATATAAATTTACTAAAATAATAATATATGATACTTTAAAATATAA
66 CAATATTCTTATATAAATTTACTAAAATCATAATATATGATACTATAAAATATAA
*
9889876 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTTATAAT
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
* *
9889941 CAATATTATTATATAAATTTACGAAAATCATAATATATGATACTATAAAATATAA
66 CAATATTCTTATATAAATTTACTAAAATCATAATATATGATACTATAAAATATAA
*
9889996 CTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
9890061 CAATATTCTTA-ATAA
66 CAATATTCTTATATAA
9890076 TCAATATTCT
Statistics
Matches: 427, Mismatches: 10, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
117 31 0.07
118 1 0.00
119 4 0.01
120 391 0.92
ACGTcount: A:0.50, C:0.06, G:0.01, T:0.44
Consensus pattern (120 bp):
TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
CAATATTCTTATATAAATTTACTAAAATCATAATATATGATACTATAAAATATAA
Found at i:9889797 original size:18 final size:17
Alignment explanation
Indices: 9889776--9889810 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
9889766 TTATTATTAA
*
9889776 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
9889794 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
9889811 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:9889917 original size:18 final size:17
Alignment explanation
Indices: 9889896--9889930 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
9889886 TTATTATTAA
*
9889896 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
9889914 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
9889931 TCTTTATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:9890037 original size:18 final size:17
Alignment explanation
Indices: 9890016--9890050 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
9890006 TTATTATTAA
*
9890016 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
9890034 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
9890051 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:9890070 original size:16 final size:16
Alignment explanation
Indices: 9890049--9890087 Score: 78
Period size: 16 Copynumber: 2.4 Consensus size: 16
9890039 ATTTAATAAA
9890049 ATTCTTAATAATCAAT
1 ATTCTTAATAATCAAT
9890065 ATTCTTAATAATCAAT
1 ATTCTTAATAATCAAT
9890081 ATTCTTA
1 ATTCTTA
9890088 TAACAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.41, C:0.13, G:0.00, T:0.46
Consensus pattern (16 bp):
ATTCTTAATAATCAAT
Found at i:9898933 original size:21 final size:22
Alignment explanation
Indices: 9898909--9898950 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
9898899 CATTTCAATG
*
9898909 CCTT-ATAAAGCATATCAAAAA
1 CCTTGATAAACCATATCAAAAA
*
9898930 CCTTGTTAAACCATATCAAAA
1 CCTTGATAAACCATATCAAAA
9898951 TCTTACCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.48, C:0.21, G:0.05, T:0.26
Consensus pattern (22 bp):
CCTTGATAAACCATATCAAAAA
Found at i:9899725 original size:23 final size:23
Alignment explanation
Indices: 9899681--9899795 Score: 92
Period size: 23 Copynumber: 4.9 Consensus size: 23
9899671 AAACTCCTCC
*
9899681 TGAGCTGATAAACAGTAGGCTCTAT
1 TGAGCTG--AAACAGTAAGCTCTAT
*
9899706 TGAGCTGAAACGGTAAGCTCTGA-
1 TGAGCTGAAACAGTAAGCTCT-AT
*
9899729 CGAGCTG-AACAGTAAGCTC-AT
1 TGAGCTGAAACAGTAAGCTCTAT
* * * *
9899750 ACGAGCTAAAACGGTAAGCTCTAA
1 -TGAGCTGAAACAGTAAGCTCTAT
*
9899774 TGAGCTGAAAACAGTAGGCTCT
1 TGAGCTG-AAACAGTAAGCTCT
9899796 TACAAGCTGA
Statistics
Matches: 73, Mismatches: 11, Indels: 13
0.75 0.11 0.13
Matches are distributed among these distances:
20 1 0.01
22 17 0.23
23 34 0.47
24 14 0.19
25 7 0.10
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (23 bp):
TGAGCTGAAACAGTAAGCTCTAT
Found at i:9899756 original size:45 final size:45
Alignment explanation
Indices: 9899690--9899830 Score: 133
Period size: 45 Copynumber: 3.0 Consensus size: 45
9899680 CTGAGCTGAT
* *
9899690 AAACAGTAGGCTC-TATTGAGCTGAAACGGTAAGCTCTGACGAGCTG
1 AAACAGTAAGCTCATA-CGAGCTGAAACGGTAAGCTCT-ACGAGCTG
* *
9899736 -AACAGTAAGCTCATACGAGCTAAAACGGTAAGCTCTAATGAGCTG
1 AAACAGTAAGCTCATACGAGCTGAAACGGTAAGCTCT-ACGAGCTG
* * *
9899781 AAAACAGTAGGCTCTTACAAGCTGAAATATCGGTAAGCTCATACGAGCTG
1 -AAACAGTAAGCTCATACGAGCTG-AA-A-CGGTAAGCTC-TACGAGCTG
9899831 TGGTGAGTCC
Statistics
Matches: 78, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
45 37 0.47
46 2 0.03
47 18 0.23
48 2 0.03
49 1 0.01
50 17 0.22
51 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (45 bp):
AAACAGTAAGCTCATACGAGCTGAAACGGTAAGCTCTACGAGCTG
Found at i:9900084 original size:67 final size:67
Alignment explanation
Indices: 9899977--9900368 Score: 604
Period size: 67 Copynumber: 5.8 Consensus size: 67
9899967 AATAATTCAA
* *
9899977 TTTCTCAAATCACATATATATATAATCTATTCAATTAAATACATACATTTAAATACTCAATTCGC
1 TTTCTCAAATCAC--ATACATATAATCAATTCAATTAAATACATACATTTAAATACTCAATTCGC
9900042 ATAC
64 ATAC
* * * *
9900046 CTTCTCAAATCACATATATATAATCGATTTAATTAAATACATACATTTAAATACTCAATTCGCAT
1 TTTCTCAAATCACATACATATAATCAATTCAATTAAATACATACATTTAAATACTCAATTCGCAT
9900111 AC
66 AC
* *
9900113 TTTCTCAAATCATATACATATAATCAATTCAATTAAATACATACATTTAATTACTCAATTCGCAT
1 TTTCTCAAATCACATACATATAATCAATTCAATTAAATACATACATTTAAATACTCAATTCGCAT
9900178 AC
66 AC
* * *
9900180 TTTCTCAAATTACATACATATAATCGATTTAATTAAATACATACATTTAAATACTCAATTCGCAT
1 TTTCTCAAATCACATACATATAATCAATTCAATTAAATACATACATTTAAATACTCAATTCGCAT
9900245 AC
66 AC
* ** * *
9900247 TTTCTCAAATCATATACATACCATCAATTTAATTAAATACATACATTTAATTACTCAATTCGCAT
1 TTTCTCAAATCACATACATATAATCAATTCAATTAAATACATACATTTAAATACTCAATTCGCAT
9900312 AC
66 AC
* *
9900314 TTTCTCAAATCACATTCATATAATCAATTCAATTAAATATATACATTTAAATACT
1 TTTCTCAAATCACATACATATAATCAATTCAATTAAATACATACATTTAAATACT
9900369 ATTGCAATTG
Statistics
Matches: 296, Mismatches: 27, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
67 284 0.96
69 12 0.04
ACGTcount: A:0.42, C:0.19, G:0.02, T:0.38
Consensus pattern (67 bp):
TTTCTCAAATCACATACATATAATCAATTCAATTAAATACATACATTTAAATACTCAATTCGCAT
AC
Found at i:9903219 original size:25 final size:25
Alignment explanation
Indices: 9903191--9903239 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
9903181 ACTTATTTGA
9903191 GTCTGCCATTTTGGCACGTTTCTTC
1 GTCTGCCATTTTGGCACGTTTCTTC
* *
9903216 GTCTGTCGTTTTGGCACGTTTCTT
1 GTCTGCCATTTTGGCACGTTTCTT
9903240 ATTGGTTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.06, C:0.24, G:0.22, T:0.47
Consensus pattern (25 bp):
GTCTGCCATTTTGGCACGTTTCTTC
Found at i:9909096 original size:15 final size:15
Alignment explanation
Indices: 9909051--9909098 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 15
9909041 TATTAATCTT
9909051 TTAATAATAAATATTTA
1 TTAATAATAAATA--TA
*
9909068 TTACAATTATAAATATA
1 TT--AATAATAAATATA
9909085 TTAATAATAAATAT
1 TTAATAATAAATAT
9909099 CTTGTAGTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
15 11 0.41
17 6 0.22
19 10 0.37
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
TTAATAATAAATATA
Found at i:9913195 original size:30 final size:31
Alignment explanation
Indices: 9913130--9913197 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 31
9913120 ACTGTTAATC
* * *
9913130 AGTGACTGTTTTGTCACTTTTTTATAACGTT
1 AGTGACTATTTTGTCACTTTTTCATAAAGTT
*
9913161 AGTGACTATTTTGTTA-TTTTTCA-AAAGTT
1 AGTGACTATTTTGTCACTTTTTCATAAAGTT
9913190 AAGTGACT
1 -AGTGACT
9913198 GAAATGAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 5 0.16
30 13 0.41
31 14 0.44
ACGTcount: A:0.25, C:0.10, G:0.16, T:0.49
Consensus pattern (31 bp):
AGTGACTATTTTGTCACTTTTTCATAAAGTT
Found at i:9918781 original size:16 final size:16
Alignment explanation
Indices: 9918757--9918789 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
9918747 TGTATTGGGT
*
9918757 TGGATTAGAGGTGTAA
1 TGGAATAGAGGTGTAA
9918773 TGGAATAGAGGTGTAA
1 TGGAATAGAGGTGTAA
9918789 T
1 T
9918790 AGCAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.36, T:0.30
Consensus pattern (16 bp):
TGGAATAGAGGTGTAA
Found at i:9918834 original size:45 final size:44
Alignment explanation
Indices: 9918768--9918862 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 44
9918758 GGATTAGAGG
*
9918768 TGTAATGGAATAGAGGTGTAATAGCAAATCAAT-TGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAA--AATGTGTTTGGTTGAA
* *
9918813 TGTAATGGAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAAATGTGTTTGGTTGAA
9918857 TGTAAT
1 TGTAAT
9918863 AGAGGTGTAA
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
43 2 0.04
44 18 0.39
45 26 0.57
ACGTcount: A:0.35, C:0.04, G:0.27, T:0.34
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAAATGTGTTTGGTTGAA
Found at i:9919044 original size:18 final size:17
Alignment explanation
Indices: 9919023--9919057 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
9919013 TTATTATTTA
*
9919023 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
9919041 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
9919058 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:9919051 original size:28 final size:27
Alignment explanation
Indices: 9918980--9919053 Score: 78
Period size: 27 Copynumber: 2.7 Consensus size: 27
9918970 TATTTATTAT
*
9918980 CAAAATAAATAATTTAATCATATTTAAA
1 CAAAATATATAATTTAAT-ATATTTAAA
* * *
9919008 CATAAT-TATTATTTAATATATTTTAAT
1 CAAAATATATAATTTAATATA-TTTAAA
*
9919035 TAAAATATATAATTTAATA
1 CAAAATATATAATTTAATA
9919054 AAATTCTTAA
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
26 3 0.08
27 18 0.49
28 16 0.43
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (27 bp):
CAAAATATATAATTTAATATATTTAAA
Found at i:9919185 original size:16 final size:17
Alignment explanation
Indices: 9919159--9919200 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
9919149 AAACATAATT
9919159 ATTATAAATATAT-TTTA
1 ATTA-AAATATATATTTA
9919176 ATTAAAATATATAATTTA
1 ATTAAAATATAT-ATTTA
9919194 A-TAAAAT
1 ATTAAAAT
9919201 TCTTAATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 8 0.35
17 10 0.43
18 5 0.22
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
ATTAAAATATATATTTA
Found at i:9919193 original size:18 final size:17
Alignment explanation
Indices: 9919166--9919200 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
9919156 ATTATTATAA
*
9919166 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
9919184 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
9919201 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:9919211 original size:143 final size:146
Alignment explanation
Indices: 9918943--9919212 Score: 476
Period size: 143 Copynumber: 1.9 Consensus size: 146
9918933 ATGATTATTG
9918943 TTATTGTTATTTAAATTTTAATAAGATTATTTATTATCAAAATAAATAATTTAATCATATTTAAA
1 TTATTGTTATTTAAATTTTAATAAGATTA--TATTATCAAAATAAATAATTTAATCATATTTAAA
*
9919008 CATAATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCA
64 CATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCA
9919073 GAAATTTGTTTTGGTAAA
129 GAAATTTGTTTTGGTAAA
9919091 TTATT-TTATTTAAATTTTAATAAGATTA-A-TATCAATAATAAATAATTTAATCATATTTAAAC
1 TTATTGTTATTTAAATTTTAATAAGATTATATTATCAA-AATAAATAATTTAATCATATTTAAAC
9919153 ATAATTATTA-TAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
65 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
9919213 ATATTCTTAT
Statistics
Matches: 120, Mismatches: 1, Indels: 7
0.94 0.01 0.05
Matches are distributed among these distances:
143 55 0.46
144 37 0.31
147 23 0.19
148 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (146 bp):
TTATTGTTATTTAAATTTTAATAAGATTATATTATCAAAATAAATAATTTAATCATATTTAAACA
TAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAGA
AATTTGTTTTGGTAAA
Found at i:9919388 original size:17 final size:16
Alignment explanation
Indices: 9919366--9919412 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
9919356 ACTCAAATCA
9919366 TAATATATGATTATAAC
1 TAATATATGATT-TAAC
*
9919383 T-A-ATATGATTTAAT
1 TAATATATGATTTAAC
9919397 TAAATATATGATTTAA
1 T-AATATATGATTTAA
9919413 TAAAATTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 4 0.15
15 8 0.31
16 2 0.08
17 12 0.46
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (16 bp):
TAATATATGATTTAAC
Found at i:9919413 original size:17 final size:17
Alignment explanation
Indices: 9919385--9919418 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
9919375 ATTATAACTA
*
9919385 ATATGATTTAATTAAAT
1 ATATGATTTAATAAAAT
9919402 ATATGATTTAATAAAAT
1 ATATGATTTAATAAAAT
9919419 TTAAAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
ATATGATTTAATAAAAT
Found at i:9919621 original size:91 final size:92
Alignment explanation
Indices: 9919451--9919643 Score: 293
Period size: 91 Copynumber: 2.1 Consensus size: 92
9919441 GATTATAGTT
* *
9919451 TATGAATTTGTATAATTTAAAATAATAATTATTACATATAATTTAATAATAATATATAATTTCAT
1 TATGAATTTATACAATTTAAAATAATAATTATTACATATAATTTAATAATAATATATAATTTCAT
* *
9919516 AAAATTCTTGATAATAAAATTTTCTTA
66 AAAATTCTTAATAATAAAATGTTCTTA
* *
9919543 TATGAATTTATACAATTTAAAATAATTAA-TATTA-ATATAA-TTATATAGTGATATATAATTTC
1 TATGAATTTATACAATTTAAAATAA-TAATTATTACATATAATTTA-ATAATAATATATAATTTC
9919605 ATAAAATTCTTAATAATAAAATGTTCTTA
64 ATAAAATTCTTAATAATAAAATGTTCTTA
9919634 TATGAATTTA
1 TATGAATTTA
9919644 CTAAAATCAA
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
90 3 0.03
91 59 0.63
92 28 0.30
93 3 0.03
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (92 bp):
TATGAATTTATACAATTTAAAATAATAATTATTACATATAATTTAATAATAATATATAATTTCAT
AAAATTCTTAATAATAAAATGTTCTTA
Found at i:9933529 original size:21 final size:22
Alignment explanation
Indices: 9933481--9933529 Score: 52
Period size: 20 Copynumber: 2.4 Consensus size: 22
9933471 CGTATCAAAA
9933481 TAATTTTAAATATATTTTTTTG
1 TAATTTTAAATATATTTTTTTG
*
9933503 T-A-TTT-AATCTAATTTTTTT-
1 TAATTTTAAATAT-ATTTTTTTG
9933522 TAATTTTA
1 TAATTTTA
9933530 GTAGAATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 8
0.71 0.03 0.26
Matches are distributed among these distances:
19 5 0.23
20 12 0.55
21 4 0.18
22 1 0.05
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (22 bp):
TAATTTTAAATATATTTTTTTG
Found at i:9933958 original size:21 final size:20
Alignment explanation
Indices: 9933932--9933998 Score: 55
Period size: 22 Copynumber: 3.1 Consensus size: 20
9933922 TTTTAAGTAG
9933932 TTTTAATGTTATTTAATTATT
1 TTTTAAT-TTATTTAATTATT
*
9933953 TTTTAAATTCTA-TTAACTATGT
1 TTTT-AATT-TATTTAATTAT-T
* *
9933975 TTTTAAACTTGTTTAATTATT
1 TTTT-AATTTATTTAATTATT
9933996 TTT
1 TTT
9933999 AAAAAAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
21 17 0.45
22 21 0.55
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.63
Consensus pattern (20 bp):
TTTTAATTTATTTAATTATT
Found at i:9933990 original size:22 final size:20
Alignment explanation
Indices: 9933943--9933998 Score: 67
Period size: 22 Copynumber: 2.6 Consensus size: 20
9933933 TTTAATGTTA
9933943 TTTAATTATTTTTTAAATTC
1 TTTAATTATTTTTTAAATTC
* *
9933963 TATTAACTATGTTTTTAAACTTG
1 T-TTAATTAT-TTTTTAAA-TTC
9933986 TTTAATTATTTTT
1 TTTAATTATTTTT
9933999 AAAAAAATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
20 1 0.03
21 11 0.37
22 15 0.50
23 3 0.10
ACGTcount: A:0.29, C:0.05, G:0.04, T:0.62
Consensus pattern (20 bp):
TTTAATTATTTTTTAAATTC
Found at i:9956754 original size:11 final size:11
Alignment explanation
Indices: 9956740--9956774 Score: 70
Period size: 11 Copynumber: 3.2 Consensus size: 11
9956730 TTTATTTTTT
9956740 TATTTTTAAAA
1 TATTTTTAAAA
9956751 TATTTTTAAAA
1 TATTTTTAAAA
9956762 TATTTTTAAAA
1 TATTTTTAAAA
9956773 TA
1 TA
9956775 CTTTATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (11 bp):
TATTTTTAAAA
Found at i:9961857 original size:17 final size:15
Alignment explanation
Indices: 9961827--9961934 Score: 50
Period size: 15 Copynumber: 7.3 Consensus size: 15
9961817 TAAATTAATA
9961827 TAAAAATAATTATAT
1 TAAAAATAATTATAT
9961842 TAAAAAT-A-T-TAT
1 TAAAAATAATTATAT
* *
9961854 TATATATTAATTTATAT
1 TA-AAAATAA-TTATAT
9961871 TAAAAAT-A-T-TAT
1 TAAAAATAATTATAT
* *
9961883 TAAATATTATATTATTT
1 TAAA-AATA-ATTATAT
* **
9961900 TTATTA-AATTATATT
1 TAAAAATAATTATA-T
*
9961915 TAATAATAATTATAT
1 TAAAAATAATTATAT
9961930 TAAAA
1 TAAAA
9961935 TATGATTAAA
Statistics
Matches: 67, Mismatches: 14, Indels: 24
0.64 0.13 0.23
Matches are distributed among these distances:
12 12 0.18
13 7 0.10
14 7 0.10
15 20 0.30
16 12 0.18
17 9 0.13
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
TAAAAATAATTATAT
Found at i:9961857 original size:29 final size:29
Alignment explanation
Indices: 9961820--9961884 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 29
9961810 TTTAATATAA
*
9961820 ATTAATATAAAAATAA-TTATATTAAAAAT
1 ATTATTAT-AAAATAATTTATATTAAAAAT
* *
9961849 ATTATTATATATTAATTTATATTAAAAAT
1 ATTATTATAAAATAATTTATATTAAAAAT
9961878 ATTATTA
1 ATTATTA
9961885 AATATTATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
28 5 0.16
29 27 0.84
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (29 bp):
ATTATTATAAAATAATTTATATTAAAAAT
Found at i:9961897 original size:29 final size:28
Alignment explanation
Indices: 9961833--9961945 Score: 113
Period size: 29 Copynumber: 3.9 Consensus size: 28
9961823 AATATAAAAA
*
9961833 TAATTATATTAAAAATATTATTATATAT
1 TAATTATATTAAAAATATTATTAAATAT
9961861 TAATTTATATTAAAAATATTATTAAATAT
1 TAA-TTATATTAAAAATATTATTAAATAT
* * * *
9961890 TATATTATTTTTATTAAAT-TATATTTAATAA
1 TA-ATTA-TATTA-AAAATAT-TATTAAATAT
*
9961921 TAATTATATT-AAAATATGATTAAAT
1 TAATTATATTAAAAATATTATTAAAT
9961946 TATTTTTAAT
Statistics
Matches: 70, Mismatches: 9, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
27 10 0.14
28 4 0.06
29 32 0.46
30 10 0.14
31 14 0.20
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (28 bp):
TAATTATATTAAAAATATTATTAAATAT
Found at i:9961947 original size:37 final size:37
Alignment explanation
Indices: 9961902--9961972 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
9961892 TATTATTTTT
*
9961902 ATTAAATTATATTTAATAATAATTATATTAAAATATG
1 ATTAAATTATATTTAATAATAATCATATTAAAATATG
* *
9961939 ATTAAATTATTTTTAATAATAATCCTATTAAAAT
1 ATTAAATTATATTTAATAATAATCATATTAAAAT
9961973 TTAATAACAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.46
Consensus pattern (37 bp):
ATTAAATTATATTTAATAATAATCATATTAAAATATG
Found at i:9962151 original size:16 final size:16
Alignment explanation
Indices: 9962130--9962185 Score: 76
Period size: 16 Copynumber: 3.5 Consensus size: 16
9962120 TGAATTACTG
* *
9962130 ATTACAGCTCTATTTC
1 ATTACAACTCTATTAC
9962146 ATTACAACTCTATTAC
1 ATTACAACTCTATTAC
* *
9962162 ATTATAACTCTATTCC
1 ATTACAACTCTATTAC
9962178 ATTACAAC
1 ATTACAAC
9962186 GAACCAAACG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.34, C:0.25, G:0.02, T:0.39
Consensus pattern (16 bp):
ATTACAACTCTATTAC
Found at i:9973661 original size:15 final size:17
Alignment explanation
Indices: 9973641--9973672 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
9973631 ACACATGGTC
9973641 GTGTGTC-CAAG-CCGT
1 GTGTGTCACAAGACCGT
9973656 GTGTGTCACAAGACCGT
1 GTGTGTCACAAGACCGT
9973673 ATGACCAAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 4 0.27
17 4 0.27
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (17 bp):
GTGTGTCACAAGACCGT
Found at i:9977342 original size:26 final size:26
Alignment explanation
Indices: 9977313--9977375 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
9977303 ACGAATTTTC
* *
9977313 TCAAAATTTTACCGGGAGTAAAATCG
1 TCAAAATTTTACCGAGAGTAAAATCA
*
9977339 TCAAAATTTTACTGAGAGTAAAATCA
1 TCAAAATTTTACCGAGAGTAAAATCA
*
9977365 TTAAAATTTTA
1 TCAAAATTTTA
9977376 TAATGGGTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.33
Consensus pattern (26 bp):
TCAAAATTTTACCGAGAGTAAAATCA
Found at i:9979594 original size:37 final size:37
Alignment explanation
Indices: 9979553--9979623 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
9979543 CTCAAAATGG
9979553 GGTTTAAATTTTCTTTTTGCCTAAATTAGTTCTTGAA
1 GGTTTAAATTTTCTTTTTGCCTAAATTAGTTCTTGAA
* *
9979590 GGTTTAAATTTTCTTTTTGTCTAAGTTAGTTCTT
1 GGTTTAAATTTTCTTTTTGCCTAAATTAGTTCTT
9979624 AAACTTAGCA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.21, C:0.10, G:0.14, T:0.55
Consensus pattern (37 bp):
GGTTTAAATTTTCTTTTTGCCTAAATTAGTTCTTGAA
Found at i:9980155 original size:6 final size:6
Alignment explanation
Indices: 9980144--9980240 Score: 194
Period size: 6 Copynumber: 16.2 Consensus size: 6
9980134 TAAATAATAA
9980144 TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT
1 TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT
9980192 TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT
1 TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT
9980240 T
1 T
9980241 AAATCACTAA
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 91 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (6 bp):
TTATAT
Found at i:9980504 original size:9 final size:10
Alignment explanation
Indices: 9980460--9980509 Score: 64
Period size: 10 Copynumber: 4.7 Consensus size: 10
9980450 AGAATTTTTA
9980460 TTTTAATGTTT
1 TTTTAATG-TT
*
9980471 TTTTAGTGTAT
1 TTTTAATGT-T
9980482 ATTTTAATGTT
1 -TTTTAATGTT
9980493 TTTTAATGTT
1 TTTTAATGTT
9980503 TTTTAAT
1 TTTTAAT
9980510 ATAATAAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
10 18 0.51
11 9 0.26
12 8 0.23
ACGTcount: A:0.22, C:0.00, G:0.10, T:0.68
Consensus pattern (10 bp):
TTTTAATGTT
Found at i:9981183 original size:192 final size:192
Alignment explanation
Indices: 9980849--9981232 Score: 637
Period size: 192 Copynumber: 2.0 Consensus size: 192
9980839 TCAGGATTAA
9980849 AAAAATCAATTTTTTAGCGGAGCCATGTAGAATAGCGTCACCTATATAAATACCAAGAAAATACT
1 AAAAATCAATTTTTTAGCGGAGCCATGTAGAATAGCGTCACCTATATAAATACCAAGAAAATACT
* ** *
9980914 GTAATTTTTAAAAAATAAGGAGACTTTTAAAAAAATCATTTTCTGATAGAGTTAAATAAATTAGA
66 ATAATTTTTAAAAAATAAGGAGACTAATAAAAAAATCATTTTCTGATAGAGCTAAATAAATTAGA
*
9980979 GCCACCAGTTTCCAAAGCTACCTATCTCCTTTTGCAACACTTTTTTAATATATTTAAAATTT
131 GCCACCAGTTTCCAAAGCTACCTATCTCCTTTTACAACACTTTTTTAATATATTTAAAATTT
* * *
9981041 AAAAATTAATTTTTTGGCGGAGCCATGTAGAATAGTGTCACCTATATAAATACCAAGAAAATACT
1 AAAAATCAATTTTTTAGCGGAGCCATGTAGAATAGCGTCACCTATATAAATACCAAGAAAATACT
*
9981106 ATAATTTTTAAAAAAATAAGGAGACTAAT-AAAAAATCATTTTCTGATAGAGCCT-AATAAATTG
66 ATAATTTTT-AAAAAATAAGGAGACTAATAAAAAAATCATTTTCTGATAGAG-CTAAATAAATTA
* *
9981169 GCGCCACCAGTTTCCAAAGCTGCCTATCTCCTTTTACAACACTTTTTTAATATATTTAAAATTT
129 GAGCCACCAGTTTCCAAAGCTACCTATCTCCTTTTACAACACTTTTTTAATATATTTAAAATTT
9981233 TTAAAAAAAA
Statistics
Matches: 179, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
192 161 0.90
193 18 0.10
ACGTcount: A:0.40, C:0.15, G:0.11, T:0.34
Consensus pattern (192 bp):
AAAAATCAATTTTTTAGCGGAGCCATGTAGAATAGCGTCACCTATATAAATACCAAGAAAATACT
ATAATTTTTAAAAAATAAGGAGACTAATAAAAAAATCATTTTCTGATAGAGCTAAATAAATTAGA
GCCACCAGTTTCCAAAGCTACCTATCTCCTTTTACAACACTTTTTTAATATATTTAAAATTT
Found at i:9995413 original size:15 final size:17
Alignment explanation
Indices: 9995376--9995415 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
9995366 CAATAAAGAC
9995376 TAAAATATTATAAACAA
1 TAAAATATTATAAACAA
9995393 -ATAAATATT-T-AACAA
1 TA-AAATATTATAAACAA
9995408 TAAAATAT
1 TAAAATAT
9995416 GTCATGCCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
15 11 0.52
16 3 0.14
17 7 0.33
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (17 bp):
TAAAATATTATAAACAA
Found at i:9995678 original size:25 final size:25
Alignment explanation
Indices: 9995645--9995699 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
9995635 CAGGTTCAAA
*
9995645 TGCA-TGGACAACCATTTGTCTAGG
1 TGCATTGGACAACCATTCGTCTAGG
*
9995669 TGCATTGGACAATCATTCGTCTAGG
1 TGCATTGGACAACCATTCGTCTAGG
*
9995694 TTCATT
1 TGCATT
9995700 ATTGTGCAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 4 0.15
25 23 0.85
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.35
Consensus pattern (25 bp):
TGCATTGGACAACCATTCGTCTAGG
Found at i:9996475 original size:18 final size:18
Alignment explanation
Indices: 9996452--9996490 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
9996442 TAACAGATCA
9996452 ATTAACCAAATTCAA-TCG
1 ATTAACCAAATT-AATTCG
9996470 ATTAACCAAATTAATTCG
1 ATTAACCAAATTAATTCG
9996488 ATT
1 ATT
9996491 TTACCTATCT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 2 0.10
18 18 0.90
ACGTcount: A:0.44, C:0.18, G:0.05, T:0.33
Consensus pattern (18 bp):
ATTAACCAAATTAATTCG
Found at i:9998330 original size:29 final size:27
Alignment explanation
Indices: 9998282--9998336 Score: 92
Period size: 29 Copynumber: 2.0 Consensus size: 27
9998272 CGAATTCGAA
9998282 TAAAAACTATATTTTTTATTTTTAAAT
1 TAAAAACTATATTTTTTATTTTTAAAT
9998309 TAAAATACATATATTTTTTATTTTTAAA
1 TAAAA-AC-TATATTTTTTATTTTTAAA
9998337 AGTTAAAAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 5 0.19
28 2 0.08
29 19 0.73
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.55
Consensus pattern (27 bp):
TAAAAACTATATTTTTTATTTTTAAAT
Found at i:10006448 original size:24 final size:25
Alignment explanation
Indices: 10006421--10006473 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 25
10006411 AAATTTAGCT
* *
10006421 TTTAACATTTATTTCTTTT-ATCAC
1 TTTAAAATTTATTTATTTTAATCAC
10006445 TTTAAAATTTATTTATTTTAATCAC
1 TTTAAAATTTATTTATTTTAATCAC
10006470 TTTA
1 TTTA
10006474 GCTCTTAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 17 0.65
25 9 0.35
ACGTcount: A:0.30, C:0.11, G:0.00, T:0.58
Consensus pattern (25 bp):
TTTAAAATTTATTTATTTTAATCAC
Found at i:10009155 original size:18 final size:18
Alignment explanation
Indices: 10009115--10009153 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
10009105 TTAATAATAA
*
10009115 TTTTATTTTGTTTTTATC
1 TTTTATTTTGATTTTATC
*
10009133 TTTTATTTT-ATTTTATG
1 TTTTATTTTGATTTTATC
10009150 TTTT
1 TTTT
10009154 TAATATTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.13, C:0.03, G:0.05, T:0.79
Consensus pattern (18 bp):
TTTTATTTTGATTTTATC
Found at i:10013719 original size:39 final size:39
Alignment explanation
Indices: 10013676--10013752 Score: 118
Period size: 39 Copynumber: 2.0 Consensus size: 39
10013666 CCCCAGTCAG
* *
10013676 TCAACAAAATGCAAAATTTACTAGAATGCTTAGTGGGAT
1 TCAACAAAATGCAAAATTAACCAGAATGCTTAGTGGGAT
* *
10013715 TCAACAAAATGGAAAATTAACCAGAATTCTTAGTGGGA
1 TCAACAAAATGCAAAATTAACCAGAATGCTTAGTGGGA
10013753 CTGAAAGGAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.43, C:0.13, G:0.18, T:0.26
Consensus pattern (39 bp):
TCAACAAAATGCAAAATTAACCAGAATGCTTAGTGGGAT
Found at i:10027645 original size:30 final size:30
Alignment explanation
Indices: 10027610--10027669 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
10027600 ACCCAAATTG
10027610 GCCTTAGTCGTGTGATCCATTTTTAATATA
1 GCCTTAGTCGTGTGATCCATTTTTAATATA
10027640 GCCTTAGTCGTGTGATCCATTTTTAATATA
1 GCCTTAGTCGTGTGATCCATTTTTAATATA
10027670 ACCCATGCTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.43
Consensus pattern (30 bp):
GCCTTAGTCGTGTGATCCATTTTTAATATA
Found at i:10029351 original size:37 final size:37
Alignment explanation
Indices: 10029290--10029509 Score: 372
Period size: 37 Copynumber: 6.0 Consensus size: 37
10029280 TACGTATGAT
* *
10029290 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
10029325 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
10029362 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
10029399 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
10029436 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
* *
10029473 CACTTATCACTCTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
10029510 TAAAGCTATC
Statistics
Matches: 175, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
35 9 0.05
36 3 0.02
37 163 0.93
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:10029552 original size:52 final size:52
Alignment explanation
Indices: 10029473--10029937 Score: 570
Period size: 52 Copynumber: 9.2 Consensus size: 52
10029463 TAAGTGTAGC
* * **
10029473 CACTTATCACTCTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTAT
1 CACTTTTCACT-TGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
10029526 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* *
10029578 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* ** *
10029624 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* *
10029676 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
** *
10029722 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* *
10029774 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* * *
10029820 CACTTTCCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* ** *
10029872 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
10029924 CACTTTGTCACTTG
1 CACTTT-TCACTTG
10029938 ATCAGAAGTA
Statistics
Matches: 358, Mismatches: 35, Indels: 38
0.83 0.08 0.09
Matches are distributed among these distances:
46 123 0.34
49 3 0.01
52 216 0.60
53 16 0.04
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
Found at i:10029614 original size:98 final size:98
Alignment explanation
Indices: 10029472--10029937 Score: 680
Period size: 98 Copynumber: 4.7 Consensus size: 98
10029462 ATAAGTGTAG
* * * ** *
10029472 CCACTTATCACTCTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACT
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTTCACT
*
10029537 TGTCACTTGATCAGATAAGTGTAGCCGAAGCTA
66 TGTCACTTGATCAGATAAGTGTAGCCAAAGCTA
* *
10029570 TCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTTCACT
*
10029635 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
66 TGTCACTTGATCAGATAAGTGTAGCCAAAGCTA
10029668 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTTCACT
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTTCACT
*
10029733 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
66 TGTCACTTGATCAGATAAGTGTAGCCAAAGCTA
*
10029766 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTTCACT
* *
10029831 TGTCACTTGATCAGATAAGTATAGCCGAAGCTA
66 TGTCACTTGATCAGATAAGTGTAGCCAAAGCTA
** * ** **
10029864 TTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTT
1 CCACTTATCAC--T----TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTT
10029929 TGTCACTTG
60 T-TCACTTG
10029938 ATCAGAAGTA
Statistics
Matches: 337, Mismatches: 24, Indels: 7
0.92 0.07 0.02
Matches are distributed among these distances:
98 287 0.85
100 1 0.00
104 43 0.13
105 6 0.02
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (98 bp):
CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTTCACT
TGTCACTTGATCAGATAAGTGTAGCCAAAGCTA
Found at i:10029648 original size:150 final size:151
Alignment explanation
Indices: 10029473--10029929 Score: 598
Period size: 150 Copynumber: 3.0 Consensus size: 151
10029463 TAAGTGTAGC
*
10029473 CACTTATCACTCTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTT
1 CACTT-TCACT-TGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTT
* *
10029538 GTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCAC-T-TTGTCACTTGATCAGATAA
64 GTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTCTTGTCACTTGATCAGATAA
* ** **
10029601 GTATAGCCGAAGCTATTACTTAT
129 GTGTAGCTAAAGCTACCACTTAT
*
10029624 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC---T---TTG
1 CACTTT-CACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTTG
10029683 TCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTTCACTTGTCACTTGATCAGA
65 TCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCAC--TT--CTTGTCACTTGATCAGA
10029748 TAAGTGTAGCTAAAGCTACCACTTAT
126 TAAGTGTAGCTAAAGCTACCACTTAT
* ** * *
10029774 CAC--T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTTGT
1 CACTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTTGT
10029834 CACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTTGTCACTTGATCAGAT
66 CACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCAC-TT---CTTGTCACTTGATCAGAT
10029899 AAGTGTAGCTAAAGCTACCACTTAT
127 AAGTGTAGCTAAAGCTACCACTTAT
10029924 CACTTT
1 CACTTT
10029930 GTCACTTGAT
Statistics
Matches: 275, Mismatches: 15, Indels: 31
0.86 0.05 0.10
Matches are distributed among these distances:
144 83 0.30
147 2 0.01
148 1 0.00
149 3 0.01
150 176 0.64
151 9 0.03
152 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (151 bp):
CACTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTTGT
CACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTCTTGTCACTTGATCAGATAAGT
GTAGCTAAAGCTACCACTTAT
Found at i:10033124 original size:49 final size:50
Alignment explanation
Indices: 10033069--10033272 Score: 241
Period size: 49 Copynumber: 4.0 Consensus size: 50
10033059 TTCGTTTTCT
*
10033069 CGATGCCATAGTCCAACTATGGTCTTACACGTAATCACA-AATCACATAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
* * *
10033118 CGATGCCATAGCCCAACTATGGTCTTACACGAAATCACA-TATCACTTAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
* *
10033167 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACACATATCACTTAC
1 CGATGCCATAGCCCAACTATGGTCTTACAC-G--T---A-ATCACACA-ATCACATAC
* * *
10033225 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCACAT
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACAT
10033273 GTTCACATGT
Statistics
Matches: 136, Mismatches: 10, Indels: 17
0.83 0.06 0.10
Matches are distributed among these distances:
49 74 0.54
50 7 0.05
51 7 0.05
52 1 0.01
55 1 0.01
56 6 0.04
57 1 0.01
58 39 0.29
ACGTcount: A:0.32, C:0.30, G:0.14, T:0.24
Consensus pattern (50 bp):
CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
Found at i:10033239 original size:58 final size:59
Alignment explanation
Indices: 10033153--10033271 Score: 231
Period size: 58 Copynumber: 2.0 Consensus size: 59
10033143 TACACGAAAT
10033153 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAT-ATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
10033211 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
10033270 CA
1 CA
10033272 TGTTCACATG
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
58 54 0.90
59 6 0.10
ACGTcount: A:0.32, C:0.31, G:0.13, T:0.24
Consensus pattern (59 bp):
CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
Found at i:10033252 original size:28 final size:28
Alignment explanation
Indices: 10033162--10033252 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 28
10033152 TCACATATCA
10033162 CTTACCGATGCCATAGCCCAGCTATGGT
1 CTTACCGATGCCATAGCCCAGCTATGGT
* * **
10033190 CTTACACGGAAT-CACATATCACA-CATAT-CA
1 CTTAC-C-G-ATGC-CATAGCCCAGC-TATGGT
10033220 CTTACCGATGCCATAGCCCAGCTATGGT
1 CTTACCGATGCCATAGCCCAGCTATGGT
10033248 CTTAC
1 CTTAC
10033253 ACGGAATCAC
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
27 12 0.26
28 13 0.28
29 2 0.04
30 8 0.17
31 12 0.26
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.25
Consensus pattern (28 bp):
CTTACCGATGCCATAGCCCAGCTATGGT
Found at i:10034586 original size:37 final size:37
Alignment explanation
Indices: 10034525--10034744 Score: 372
Period size: 37 Copynumber: 6.0 Consensus size: 37
10034515 TACGTATGAT
* *
10034525 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
10034560 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
10034597 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
10034634 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
10034671 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
* *
10034708 CACTTATCACTCTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
10034745 TAAAGCTATC
Statistics
Matches: 175, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
35 9 0.05
36 3 0.02
37 163 0.93
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:10034787 original size:52 final size:52
Alignment explanation
Indices: 10034708--10035172 Score: 570
Period size: 52 Copynumber: 9.2 Consensus size: 52
10034698 TAAGTGTAGC
* * **
10034708 CACTTATCACTCTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTAT
1 CACTTTTCACT-TGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
10034761 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* *
10034813 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* ** *
10034859 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* *
10034911 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
** *
10034957 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* *
10035009 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* * *
10035055 CACTTTCCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* ** *
10035107 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
10035159 CACTTTGTCACTTG
1 CACTTT-TCACTTG
10035173 ATCAGAAGTA
Statistics
Matches: 358, Mismatches: 35, Indels: 38
0.83 0.08 0.09
Matches are distributed among these distances:
46 123 0.34
49 3 0.01
52 216 0.60
53 16 0.04
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
Found at i:10034849 original size:98 final size:98
Alignment explanation
Indices: 10034707--10035172 Score: 680
Period size: 98 Copynumber: 4.7 Consensus size: 98
10034697 ATAAGTGTAG
* * * ** *
10034707 CCACTTATCACTCTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACT
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTTCACT
*
10034772 TGTCACTTGATCAGATAAGTGTAGCCGAAGCTA
66 TGTCACTTGATCAGATAAGTGTAGCCAAAGCTA
* *
10034805 TCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTTCACT
*
10034870 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
66 TGTCACTTGATCAGATAAGTGTAGCCAAAGCTA
10034903 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTTCACT
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTTCACT
*
10034968 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
66 TGTCACTTGATCAGATAAGTGTAGCCAAAGCTA
*
10035001 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTTCACT
* *
10035066 TGTCACTTGATCAGATAAGTATAGCCGAAGCTA
66 TGTCACTTGATCAGATAAGTGTAGCCAAAGCTA
** * ** **
10035099 TTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTT
1 CCACTTATCAC--T----TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTT
10035164 TGTCACTTG
60 T-TCACTTG
10035173 ATCAGAAGTA
Statistics
Matches: 337, Mismatches: 24, Indels: 7
0.92 0.07 0.02
Matches are distributed among these distances:
98 287 0.85
100 1 0.00
104 43 0.13
105 6 0.02
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (98 bp):
CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTTCACT
TGTCACTTGATCAGATAAGTGTAGCCAAAGCTA
Found at i:10034883 original size:150 final size:151
Alignment explanation
Indices: 10034708--10035164 Score: 598
Period size: 150 Copynumber: 3.0 Consensus size: 151
10034698 TAAGTGTAGC
*
10034708 CACTTATCACTCTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTT
1 CACTT-TCACT-TGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTT
* *
10034773 GTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCAC-T-TTGTCACTTGATCAGATAA
64 GTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTCTTGTCACTTGATCAGATAA
* ** **
10034836 GTATAGCCGAAGCTATTACTTAT
129 GTGTAGCTAAAGCTACCACTTAT
*
10034859 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC---T---TTG
1 CACTTT-CACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTTG
10034918 TCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTTCACTTGTCACTTGATCAGA
65 TCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCAC--TT--CTTGTCACTTGATCAGA
10034983 TAAGTGTAGCTAAAGCTACCACTTAT
126 TAAGTGTAGCTAAAGCTACCACTTAT
* ** * *
10035009 CAC--T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTTGT
1 CACTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTTGT
10035069 CACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTTGTCACTTGATCAGAT
66 CACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCAC-TT---CTTGTCACTTGATCAGAT
10035134 AAGTGTAGCTAAAGCTACCACTTAT
127 AAGTGTAGCTAAAGCTACCACTTAT
10035159 CACTTT
1 CACTTT
10035165 GTCACTTGAT
Statistics
Matches: 275, Mismatches: 15, Indels: 31
0.86 0.05 0.10
Matches are distributed among these distances:
144 83 0.30
147 2 0.01
148 1 0.00
149 3 0.01
150 176 0.64
151 9 0.03
152 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (151 bp):
CACTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTTGT
CACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTCTTGTCACTTGATCAGATAAGT
GTAGCTAAAGCTACCACTTAT
Found at i:10038460 original size:58 final size:57
Alignment explanation
Indices: 10038398--10038515 Score: 145
Period size: 57 Copynumber: 2.1 Consensus size: 57
10038388 ATAGAAGTGG
*
10038398 TGAAAATAGAGAAAT-GATAATCATTTTG-AAATG-AT-TATGATTTTCTCCAAAATGAAAA
1 TGAAAATAGAGAAATGGA-AA-CA-TTTGAAAATGAATGTA-G-TTTTCTCCAAAATCAAAA
*
10038456 TGAAAATGGAGAAATGGAAACATTTGAAAATGAATGTAGTTTTCTCCAAAATCAAAA
1 TGAAAATAGAGAAATGGAAACATTTGAAAATGAATGTAGTTTTCTCCAAAATCAAAA
10038513 TGA
1 TGA
10038516 CTTGAAAATT
Statistics
Matches: 54, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
56 4 0.07
57 27 0.50
58 19 0.35
59 4 0.07
ACGTcount: A:0.47, C:0.08, G:0.16, T:0.30
Consensus pattern (57 bp):
TGAAAATAGAGAAATGGAAACATTTGAAAATGAATGTAGTTTTCTCCAAAATCAAAA
Found at i:10039110 original size:10 final size:10
Alignment explanation
Indices: 10039095--10039195 Score: 79
Period size: 10 Copynumber: 10.2 Consensus size: 10
10039085 CTAAAGTTAA
10039095 AATATATTAT
1 AATATATTAT
10039105 AATATA--AT
1 AATATATTAT
10039113 AATATTATT-T
1 AATA-TATTAT
10039123 AA-A-ATT-T
1 AATATATTAT
10039130 AAGTATATATAT
1 AA-TATAT-TAT
*
10039142 TATATATTAT
1 AATATATTAT
10039152 ATATTATATTAT
1 A-A-TATATTAT
*
10039164 ATTATATTAT
1 AATATATTAT
*
10039174 ATTATATTAT
1 AATATATTAT
*
10039184 ATTATATTAT
1 AATATATTAT
10039194 AA
1 AA
10039196 AAACAAACAA
Statistics
Matches: 77, Mismatches: 4, Indels: 20
0.76 0.04 0.20
Matches are distributed among these distances:
7 6 0.08
8 6 0.08
9 4 0.05
10 43 0.56
11 7 0.09
12 11 0.14
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (10 bp):
AATATATTAT
Found at i:10039145 original size:7 final size:7
Alignment explanation
Indices: 10039135--10039190 Score: 62
Period size: 7 Copynumber: 7.7 Consensus size: 7
10039125 AATTTAAGTA
10039135 TATATAT
1 TATATAT
10039142 TATATAT
1 TATATAT
10039149 TATATAT
1 TATATAT
10039156 TATAT-T
1 TATATAT
10039162 ATATTATAT
1 -TA-TATAT
10039171 TATAT-T
1 TATATAT
10039177 ATATTATAT
1 -TA-TATAT
10039186 TATAT
1 TATAT
10039191 TATAAAAACA
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
6 2 0.05
7 29 0.67
8 10 0.23
9 2 0.05
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
TATATAT
Found at i:10039152 original size:5 final size:5
Alignment explanation
Indices: 10039133--10039194 Score: 94
Period size: 5 Copynumber: 12.8 Consensus size: 5
10039123 AAAATTTAAG
10039133 TATA- TATAT TATA- TAT-T ATATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT -TATAT TATAT TATAT TATAT TATAT TATAT
10039181 TATAT TATAT TATA
1 TATAT TATAT TATA
10039195 AAAACAAACA
Statistics
Matches: 54, Mismatches: 0, Indels: 7
0.89 0.00 0.11
Matches are distributed among these distances:
4 7 0.13
5 46 0.85
6 1 0.02
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TATAT
Found at i:10040183 original size:25 final size:25
Alignment explanation
Indices: 10040135--10040183 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
10040125 TTTAGTGCGC
* **
10040135 TCTCTGATTATTAGCACGTTAGTGA
1 TCTCTGATTACTAGCACGACAGTGA
10040160 TCTCTGATTACTAGCACGACAGTG
1 TCTCTGATTACTAGCACGACAGTG
10040184 CTATCCGTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.35
Consensus pattern (25 bp):
TCTCTGATTACTAGCACGACAGTGA
Found at i:10040228 original size:22 final size:21
Alignment explanation
Indices: 10040180--10040236 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
10040170 CTAGCACGAC
* *
10040180 AGTGCTATCCGTTTAGCATAT
1 AGTGCTCTCTGTTTAGCATAT
*
10040201 ATGTGCTCTCTGTTTAGCACTTT
1 A-GTGCTCTCTGTTTAGCA-TAT
*
10040224 AGTGCTCTTTGTT
1 AGTGCTCTCTGTT
10040237 CATTAGTGCA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 1 0.03
22 26 0.87
23 3 0.10
ACGTcount: A:0.16, C:0.19, G:0.19, T:0.46
Consensus pattern (21 bp):
AGTGCTCTCTGTTTAGCATAT
Found at i:10051041 original size:25 final size:25
Alignment explanation
Indices: 10051012--10051081 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
10051002 TTACCAATTC
*
10051012 CAACTCTTATGAGCTTACCGATACT
1 CAACTCGTATGAGCTTACCGATACT
* *
10051037 CAACTCGTATGAGCTTATCGATATT
1 CAACTCGTATGAGCTTACCGATACT
* *
10051062 CAACTCGGAGGAGCTTACCG
1 CAACTCGTATGAGCTTACCG
10051082 TTTATCGCTC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.29
Consensus pattern (25 bp):
CAACTCGTATGAGCTTACCGATACT
Found at i:10052902 original size:21 final size:20
Alignment explanation
Indices: 10052876--10052918 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
10052866 TAAAACAACT
10052876 AAAGAA-AACAAATTCAAGAAC
1 AAAGAATAA-AAATTCAA-AAC
*
10052897 AAAGAATAAAGATTCAAAAC
1 AAAGAATAAAAATTCAAAAC
10052917 AA
1 AA
10052919 TAAACAAAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 5 0.25
21 13 0.65
22 2 0.10
ACGTcount: A:0.67, C:0.12, G:0.09, T:0.12
Consensus pattern (20 bp):
AAAGAATAAAAATTCAAAAC
Found at i:10054254 original size:33 final size:33
Alignment explanation
Indices: 10054217--10054310 Score: 116
Period size: 33 Copynumber: 2.8 Consensus size: 33
10054207 AGGGTCTTAG
* *
10054217 TGCTCATTTTCATGCATAATTAGATTCCATCAT
1 TGCTCATTTTCATGCACAATTAGATTCCATCAC
*
10054250 TGCTCATTTTGATGCACAATTAGATTCCATCAC
1 TGCTCATTTTCATGCACAATTAGATTCCATCAC
* * * * *
10054283 TGCTTATTTTGATACACGATTTGATTCC
1 TGCTCATTTTCATGCACAATTAGATTCC
10054311 TTCTCTACTC
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 54 1.00
ACGTcount: A:0.26, C:0.21, G:0.12, T:0.41
Consensus pattern (33 bp):
TGCTCATTTTCATGCACAATTAGATTCCATCAC
Found at i:10057573 original size:21 final size:24
Alignment explanation
Indices: 10057549--10057596 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
10057539 TTTGTGTTTA
*
10057549 GTTGAAGA-GAA-AA-CAAATTTT
1 GTTGAAGATGAATAACCAAATGTT
10057570 GTTGAAGATGAATAACCAAATGTT
1 GTTGAAGATGAATAACCAAATGTT
10057594 GTT
1 GTT
10057597 TGTATACGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 8 0.35
22 3 0.13
23 2 0.09
24 10 0.43
ACGTcount: A:0.42, C:0.06, G:0.21, T:0.31
Consensus pattern (24 bp):
GTTGAAGATGAATAACCAAATGTT
Found at i:10060426 original size:14 final size:13
Alignment explanation
Indices: 10060409--10060451 Score: 54
Period size: 12 Copynumber: 3.4 Consensus size: 13
10060399 TTCATATGAA
10060409 ATTATAATTTTTT
1 ATTATAATTTTTT
10060422 CATTATAATTTTTT
1 -ATTATAATTTTTT
*
10060436 A-TATGATTTTTT
1 ATTATAATTTTTT
10060448 -TTAT
1 ATTAT
10060452 TTCTTATATG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
12 13 0.48
13 1 0.04
14 13 0.48
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (13 bp):
ATTATAATTTTTT
Found at i:10060444 original size:12 final size:14
Alignment explanation
Indices: 10060409--10060447 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
10060399 TTCATATGAA
10060409 ATTATAATTTTTTC
1 ATTATAATTTTTTC
10060423 ATTATAATTTTTT-
1 ATTATAATTTTTTC
*
10060436 A-TATGATTTTTT
1 ATTATAATTTTTT
10060448 TTATTTCTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 10 0.42
13 1 0.04
14 13 0.54
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.67
Consensus pattern (14 bp):
ATTATAATTTTTTC
Found at i:10060487 original size:95 final size:88
Alignment explanation
Indices: 10060388--10060617 Score: 278
Period size: 84 Copynumber: 2.6 Consensus size: 88
10060378 ATTTTTCATT
10060388 AAGTGAAATTTTTCATATGAAATTATAATTTTTTCATTATAATTTTTTATATGATTTTTTTTATT
1 AAGTGAAATTTTT-ATATGAAATTATAATTTTTTCATTATAATTTTTTATATGA------TTATT
*
10060453 TCTTATATGAAAATATTGTTACAATTGATA
59 TCTTATATGAAAATATTGTAACAATTGATA
10060483 AAGTGAAAATTTTTATATGAAATTATAATTTTTTCATTATAA--TTTT-T-T-ATTATTTCTTAT
1 AAGTG-AAATTTTTATATGAAATTATAATTTTTTCATTATAATTTTTTATATGATTATTTCTTAT
* *
10060543 ATGAAAATATTGTAATATTTGATA
65 ATGAAAATATTGTAACAATTGATA
* *
10060567 ATGTGGAAATTTTTATATGAAATTATAA-TTTTTC--TATGATTTTTTATATGA
1 AAGT-GAAATTTTTATATGAAATTATAATTTTTTCATTATAATTTTTTATATGA
10060618 AAATATTGTA
Statistics
Matches: 123, Mismatches: 5, Indels: 23
0.81 0.03 0.15
Matches are distributed among these distances:
81 4 0.03
83 10 0.08
84 58 0.47
85 2 0.02
86 1 0.01
90 1 0.01
91 1 0.01
92 1 0.01
93 4 0.03
95 33 0.27
96 8 0.07
ACGTcount: A:0.36, C:0.03, G:0.08, T:0.53
Consensus pattern (88 bp):
AAGTGAAATTTTTATATGAAATTATAATTTTTTCATTATAATTTTTTATATGATTATTTCTTATA
TGAAAATATTGTAACAATTGATA
Found at i:10060508 original size:81 final size:82
Alignment explanation
Indices: 10060423--10060613 Score: 287
Period size: 84 Copynumber: 2.3 Consensus size: 82
10060413 TAATTTTTTC
*
10060423 ATTATAATTTTTTATATGATTTTTT-TTATTTCTTATATGAAAATATTGTTACAATTGATAAAGT
1 ATTATAATTTTTTATATGATTTTTTATTATTTCTTATATGAAAATATTGTAACAATTGATAAAGT
10060487 GAAAATTTTTATATGAA
66 GAAAATTTTTATATGAA
* * * *
10060504 ATTATAATTTTTTCATTATAATTTTTTATTATTTCTTATATGAAAATATTGTAATATTTGATAAT
1 ATTATAATTTTTT-A-TATGATTTTTTATTATTTCTTATATGAAAATATTGTAACAATTGATAAA
*
10060569 GTGGAAATTTTTATATGAA
64 GTGAAAATTTTTATATGAA
*
10060588 ATTATAA-TTTTTCTATGATTTTTTAT
1 ATTATAATTTTTTATATGATTTTTTAT
10060614 ATGAAAATAT
Statistics
Matches: 99, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
81 25 0.25
82 1 0.01
83 15 0.15
84 58 0.59
ACGTcount: A:0.35, C:0.03, G:0.08, T:0.54
Consensus pattern (82 bp):
ATTATAATTTTTTATATGATTTTTTATTATTTCTTATATGAAAATATTGTAACAATTGATAAAGT
GAAAATTTTTATATGAA
Found at i:10060534 original size:13 final size:14
Alignment explanation
Indices: 10060504--10060535 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
10060494 TTTATATGAA
10060504 ATTATAATTTTTTC
1 ATTATAATTTTTTC
10060518 ATTATAATTTTTT-
1 ATTATAATTTTTTC
10060531 ATTAT
1 ATTAT
10060536 TTCTTATATG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (14 bp):
ATTATAATTTTTTC
Found at i:10063572 original size:46 final size:46
Alignment explanation
Indices: 10063471--10063796 Score: 394
Period size: 46 Copynumber: 7.6 Consensus size: 46
10063461 TACGTATGAT
*
10063471 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCT-AGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
10063514 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
10063560 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
* *
10063606 CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAGGCTAA
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
*
10063652 CACTTATCACTTTGTCACTTGATCATATAA--GTA--T-A-G----
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
* *
10063688 CACTTAACACTTTTTCACTTGATCAGATAA--GTA--T-A-G----
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
* *
10063724 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
*
10063770 CACTTATCACTTTATCTA-TTGATCAGA
1 CACTTATCACTTTGTC-ACTTGATCAGA
10063797 AGTACTCAAA
Statistics
Matches: 259, Mismatches: 10, Indels: 25
0.88 0.03 0.09
Matches are distributed among these distances:
36 62 0.24
38 3 0.01
40 2 0.01
41 2 0.01
42 2 0.01
43 10 0.04
44 8 0.03
45 20 0.08
46 149 0.58
47 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.34
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
Found at i:10063693 original size:36 final size:36
Alignment explanation
Indices: 10063652--10063760 Score: 182
Period size: 36 Copynumber: 3.0 Consensus size: 36
10063642 CTAAGGCTAA
* *
10063652 CACTTATCACTTTGTCACTTGATCATATAAGTATAG
1 CACTTATCACTTTTTCACTTGATCAGATAAGTATAG
*
10063688 CACTTAACACTTTTTCACTTGATCAGATAAGTATAG
1 CACTTATCACTTTTTCACTTGATCAGATAAGTATAG
*
10063724 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAG
1 CACTTATCACTTTTTCACTTGATCAGATAAGTATAG
10063760 C
1 C
10063761 TAAAGCTACC
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 68 1.00
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.38
Consensus pattern (36 bp):
CACTTATCACTTTTTCACTTGATCAGATAAGTATAG
Found at i:10068637 original size:24 final size:24
Alignment explanation
Indices: 10068605--10068651 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
10068595 AAACCGATTG
*
10068605 AATTGCAAATCAGTGCTCTAATTA
1 AATTGCAAATCAGTACTCTAATTA
10068629 AATTGCAAATCAGTACTCTAATT
1 AATTGCAAATCAGTACTCTAATT
10068652 GATTTGACCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.34
Consensus pattern (24 bp):
AATTGCAAATCAGTACTCTAATTA
Found at i:10075146 original size:10 final size:9
Alignment explanation
Indices: 10075107--10075214 Score: 53
Period size: 10 Copynumber: 11.7 Consensus size: 9
10075097 CATGTGGCAA
10075107 AAAAATTAT
1 AAAAATTAT
10075116 AAAAA--AT
1 AAAAATTAT
*
10075123 AAAAATCAAT
1 AAAAAT-TAT
*
10075133 AAAAGTTAT
1 AAAAATTAT
10075142 AAAAATTATT
1 AAAAATTA-T
**
10075152 AAATTTTAAT
1 AAAAATT-AT
10075162 AAAAA-TAT
1 AAAAATTAT
*
10075170 AAAAAAATATT
1 -AAAAATTA-T
* *
10075181 TAAAATTAGG
1 AAAAATTA-T
*
10075191 AAAAAATAT
1 AAAAATTAT
10075200 -AAAATGTAT
1 AAAAAT-TAT
10075209 AAAAAT
1 AAAAAT
10075215 GACCCTCTAA
Statistics
Matches: 74, Mismatches: 15, Indels: 19
0.69 0.14 0.18
Matches are distributed among these distances:
7 7 0.09
8 6 0.08
9 23 0.31
10 36 0.49
11 2 0.03
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.30
Consensus pattern (9 bp):
AAAAATTAT
Found at i:10075406 original size:11 final size:10
Alignment explanation
Indices: 10075385--10075561 Score: 88
Period size: 10 Copynumber: 18.3 Consensus size: 10
10075375 CTTTTGGTAC
10075385 TATAA-TTTT
1 TATAATTTTT
10075394 TATAATTTTTT
1 TATAA-TTTTT
*
10075405 TATAA-ATTT
1 TATAATTTTT
10075414 TAT-ATTTCTT
1 TATAATTT-TT
*
10075424 TA-CATTTTT
1 TATAATTTTT
10075433 TATAATTTTCT
1 TATAATTTT-T
* *
10075444 TATGA--CTT
1 TATAATTTTT
**
10075452 TATAAAATTT
1 TATAATTTTT
10075462 TATAATTTTT
1 TATAATTTTT
10075472 T-T-ATATTTT
1 TATAAT-TTTT
**
10075481 TATAAAATTT
1 TATAATTTTT
*
10075491 TACAATTTTTT
1 TATAA-TTTTT
*
10075502 TATAATTTTC
1 TATAATTTTT
*
10075512 TA-AAATTTT
1 TATAATTTTT
* *
10075521 TAAAATTCTT
1 TATAATTTTT
*
10075531 TCTAATTTTT
1 TATAATTTTT
* *
10075541 AATAA-TTTC
1 TATAATTTTT
10075550 TAT-ATTTTT
1 TATAATTTTT
10075559 TAT
1 TAT
10075562 TAAAACTTAA
Statistics
Matches: 125, Mismatches: 28, Indels: 30
0.68 0.15 0.16
Matches are distributed among these distances:
8 9 0.07
9 41 0.33
10 53 0.42
11 22 0.18
ACGTcount: A:0.32, C:0.05, G:0.01, T:0.62
Consensus pattern (10 bp):
TATAATTTTT
Found at i:10075412 original size:12 final size:11
Alignment explanation
Indices: 10075390--10075510 Score: 52
Period size: 11 Copynumber: 12.2 Consensus size: 11
10075380 GGTACTATAA
10075390 TTTTTATAATT
1 TTTTTATAATT
10075401 TTTTTATAA--
1 TTTTTATAATT
*
10075410 ATTTTAT-ATT
1 TTTTTATAATT
* *
10075420 TCTTTA-CA-T
1 TTTTTATAATT
10075429 TTTTTATAATT
1 TTTTTATAATT
* *
10075440 TTCTTATGA--
1 TTTTTATAATT
* *
10075449 -CTTTATAA-A
1 TTTTTATAATT
*
10075458 ATTTTATAATT
1 TTTTTATAATT
10075469 TTTTTAT-A--
1 TTTTTATAATT
*
10075477 TTTTTATAA-A
1 TTTTTATAATT
* *
10075487 ATTTTACAATT
1 TTTTTATAATT
10075498 TTTTTATAATT
1 TTTTTATAATT
10075509 TT
1 TT
10075511 CTAAAATTTT
Statistics
Matches: 81, Mismatches: 18, Indels: 22
0.67 0.15 0.18
Matches are distributed among these distances:
8 13 0.16
9 13 0.16
10 21 0.26
11 34 0.42
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (11 bp):
TTTTTATAATT
Found at i:10075413 original size:21 final size:20
Alignment explanation
Indices: 10075385--10075559 Score: 105
Period size: 19 Copynumber: 9.0 Consensus size: 20
10075375 CTTTTGGTAC
10075385 TATAATTTTTATAATTTTTT
1 TATAATTTTTATAATTTTTT
* *
10075405 TATAAATTTTAT-ATTTCTT
1 TATAATTTTTATAATTTTTT
* * *
10075424 TACATTTTTTATAATTTTCT
1 TATAATTTTTATAATTTTTT
* * **
10075444 TATGA-CTTTATAA-AATTT
1 TATAATTTTTATAATTTTTT
* *
10075462 TATAATTTTT-TTATATTTT
1 TATAATTTTTATAATTTTTT
* *
10075481 TATAAAATTTTACAATTTTTT
1 TAT-AATTTTTATAATTTTTT
*
10075502 TATAATTTTCTA-AA-ATTTT
1 TATAATTTT-TATAATTTTTT
* *
10075521 TAAAATTCTTTCTAA-TTTTT
1 TATAATT-TTTATAATTTTTT
* *
10075541 AATAATTTCTAT-ATTTTTT
1 TATAATTTTTATAATTTTTT
10075560 ATTAAAACTT
Statistics
Matches: 115, Mismatches: 31, Indels: 19
0.70 0.19 0.12
Matches are distributed among these distances:
18 9 0.08
19 51 0.44
20 44 0.38
21 11 0.10
ACGTcount: A:0.32, C:0.05, G:0.01, T:0.62
Consensus pattern (20 bp):
TATAATTTTTATAATTTTTT
Found at i:10075438 original size:48 final size:48
Alignment explanation
Indices: 10075385--10075548 Score: 129
Period size: 49 Copynumber: 3.4 Consensus size: 48
10075375 CTTTTGGTAC
10075385 TATAATTTTTATAATTTTTTTATAAATTTTAT-ATTTCTTTACATTTTT
1 TATAATTTTTATAATTTTTTTATAAATTTTATAATTTCTTTACA-TTTT
*** * *
10075433 TATAATTTTCT-T-ATGACTTTATAAAATTTTATAATTTTTTTATATTTT
1 TATAATTTT-TATAATTTTTTTAT-AAATTTTATAATTTCTTTACATTTT
* * * * * *
10075481 TATAAAATTTTACAATTTTTTTATAATTTTCTAAAATTT-TTAAAATTCTT
1 TAT-AATTTTTATAATTTTTTTATAAATTT-TATAATTTCTTTACATT-TT
*
10075531 TCTAATTTTTAATAATTT
1 TATAATTTTT-ATAATTT
10075549 CTATATTTTT
Statistics
Matches: 90, Mismatches: 17, Indels: 16
0.73 0.14 0.13
Matches are distributed among these distances:
47 7 0.08
48 27 0.30
49 32 0.36
50 24 0.27
ACGTcount: A:0.33, C:0.05, G:0.01, T:0.62
Consensus pattern (48 bp):
TATAATTTTTATAATTTTTTTATAAATTTTATAATTTCTTTACATTTT
Found at i:10075465 original size:29 final size:28
Alignment explanation
Indices: 10075430--10075559 Score: 122
Period size: 29 Copynumber: 4.5 Consensus size: 28
10075420 TCTTTACATT
* *
10075430 TTTTATAATTTTCTTATGACTTTATAAAA
1 TTTTATAATTTTTTTAT-ATTTTATAAAA
10075459 TTTTATAATTTTTTTATATTTTTATAAAA
1 TTTTATAATTTTTTTATA-TTTTATAAAA
* *
10075488 TTTTACAATTTTTTTATAATTTTCTAAAA
1 TTTTATAATTTTTTTAT-ATTTTATAAAA
* *
10075517 TTTTTAAAATTCTTTCTA-ATTTT-TAATAA
1 -TTTTATAATT-TTTTTATATTTTATAA-AA
10075546 TTTCTAT-ATTTTTT
1 TTT-TATAATTTTTT
10075560 ATTAAAACTT
Statistics
Matches: 87, Mismatches: 8, Indels: 14
0.80 0.07 0.13
Matches are distributed among these distances:
27 3 0.03
28 10 0.11
29 59 0.68
30 10 0.11
31 5 0.06
ACGTcount: A:0.32, C:0.05, G:0.01, T:0.62
Consensus pattern (28 bp):
TTTTATAATTTTTTTATATTTTATAAAA
Found at i:10075889 original size:89 final size:85
Alignment explanation
Indices: 10075763--10075976 Score: 243
Period size: 89 Copynumber: 2.5 Consensus size: 85
10075753 AAAAAGTAAG
* * * * * *
10075763 AGCTTAATTACTTTTTTTGAAAAAGTTTGAGGGCCTTTTTCATGCATTTTGAAAGTTCAAGTACT
1 AGCTTAATTGCTTTTTTTGAAAAAGTTTGAGGACCTTTTTCATACATATTAAAAGTTCAAATAC-
* *
10075828 C-AATTGAGTGCAAAAAGAAACAT
65 CAAATTAAATG-AAAAA-AAA-AT
* * * *
10075851 GGGCTTAATTGCTTTTTTTAAAAAAATTTGAGGACCTTTTTTATACATATTAAAAGTTCAAATAC
1 -AGCTTAATTGCTTTTTTTGAAAAAGTTTGAGGACCTTTTTCATACATATTAAAAGTTCAAATAC
10075916 CAAATTAAATGAAAAAAAAAT
65 CAAATTAAATGAAAAAAAAAT
* *
10075937 AGCTTAATTGCTTCTTTTGAAAAAGTTTGCGGA-CTTTTTC
1 AGCTTAATTGCTTTTTTTGAAAAAGTTTGAGGACCTTTTTC
10075977 GTCATTAAGC
Statistics
Matches: 106, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
84 6 0.06
85 28 0.26
86 2 0.02
87 3 0.03
88 6 0.06
89 61 0.58
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (85 bp):
AGCTTAATTGCTTTTTTTGAAAAAGTTTGAGGACCTTTTTCATACATATTAAAAGTTCAAATACC
AAATTAAATGAAAAAAAAAT
Found at i:10078558 original size:18 final size:17
Alignment explanation
Indices: 10078535--10078569 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
10078525 TTGCCGGTAG
10078535 ATACATGCATATGGATGC
1 ATACATGCATA-GGATGC
*
10078553 ATACATGCTTAGGATGC
1 ATACATGCATAGGATGC
10078570 CATTTCCAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (17 bp):
ATACATGCATAGGATGC
Found at i:10087744 original size:20 final size:22
Alignment explanation
Indices: 10087709--10087750 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
10087699 TCTGCTCAAG
10087709 AAATTAGCAAATATTAG-TAAT
1 AAATTAGCAAATATTAGCTAAT
*
10087730 AAATTA-CAGATATTAGCTAAT
1 AAATTAGCAAATATTAGCTAAT
10087751 TGATTTTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.50, C:0.07, G:0.10, T:0.33
Consensus pattern (22 bp):
AAATTAGCAAATATTAGCTAAT
Found at i:10092253 original size:24 final size:24
Alignment explanation
Indices: 10092238--10092289 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
10092228 AATCAAAGTC
10092238 AAATATATTATGCTAATAAATGCT
1 AAATATATTATGCTAATAAATGCT
* * *
10092262 AAATATATTATACTCATAAATACT
1 AAATATATTATGCTAATAAATGCT
10092286 AAAT
1 AAAT
10092290 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.50, C:0.10, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATGCTAATAAATGCT
Found at i:10096417 original size:24 final size:24
Alignment explanation
Indices: 10096408--10096459 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
10096398 AATCAAAGTC
10096408 AAATATATTATGCTAATAAATGCT
1 AAATATATTATGCTAATAAATGCT
* * *
10096432 AAATATATTATACTCATAAATACT
1 AAATATATTATGCTAATAAATGCT
10096456 AAAT
1 AAAT
10096460 CTTATTCTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.50, C:0.10, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATGCTAATAAATGCT
Found at i:10099318 original size:20 final size:20
Alignment explanation
Indices: 10099295--10099333 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
10099285 TTTAAAAACT
10099295 TATTCACTTAAATA-AATAAA
1 TATT-ACTTAAATATAATAAA
*
10099315 TATTATTTAAATATAATAA
1 TATTACTTAAATATAATAA
10099334 TTATAATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (20 bp):
TATTACTTAAATATAATAAA
Found at i:10101834 original size:98 final size:98
Alignment explanation
Indices: 10101673--10101940 Score: 341
Period size: 96 Copynumber: 2.8 Consensus size: 98
10101663 GTTTTTTAAT
* * * *
10101673 TAAATTAATTATAAATTTTTT--AAAATTAGATTAGGGCTTCGCGTTTATGGTTTTTAAGGAAAA
1 TAAATTAATTATAAATTTTTTAAAAAATTAGATTAGGGTTTAGTGTTTAGGGTTTTTAAGGAAAA
* * * *
10101736 AATCAATTAAATTAATATTTA-GGATTACTCGAG
66 AATAAAATAAAATAAGATTTATGG-TTACTCGAG
*
10101769 TAAATTAATTATAAATTTTTTAAAAAATTAGATTAGGGTTTAATG-TTACGGGTTTTTAAGG-AA
1 TAAATTAATTATAAATTTTTTAAAAAATTAGATTAGGGTTTAGTGTTTA-GGGTTTTTAAGGAAA
* * *
10101832 AAATAAAATAAAATAGGGTTTATGGTTACTTGAG
65 AAATAAAATAAAATAAGATTTATGGTTACTCGAG
* *
10101866 -AAATTAATTATAAATTTTTAAAAAAATTAGGTTAGGGTTTAGTGTTTAGGGTTTTTAAGGAAAA
1 TAAATTAATTATAAATTTTTTAAAAAATTAGATTAGGGTTTAGTGTTTAGGGTTTTTAAGGAAAA
*
10101930 ATTAAAATAAA
66 AATAAAATAAA
10101941 TTAGGGTTTG
Statistics
Matches: 150, Mismatches: 16, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
96 74 0.49
97 45 0.30
98 31 0.21
ACGTcount: A:0.41, C:0.03, G:0.16, T:0.40
Consensus pattern (98 bp):
TAAATTAATTATAAATTTTTTAAAAAATTAGATTAGGGTTTAGTGTTTAGGGTTTTTAAGGAAAA
AATAAAATAAAATAAGATTTATGGTTACTCGAG
Found at i:10101967 original size:96 final size:95
Alignment explanation
Indices: 10101673--10101973 Score: 322
Period size: 96 Copynumber: 3.1 Consensus size: 95
10101663 GTTTTTTAAT
* * * * *
10101673 TAAATTAATTATAAATTTTT-TAAAATTAGATTAGGGCTTCGCGTTTATGGTTTTTAAGGAAAAA
1 TAAATTAATTATAAATTTTTAAAAAATTAGATTAGGGTTTAGTGTTTAGGGTTTTTAAGG-AAAA
* * *** * *
10101737 ATCAATTAAATTAATATTTAGGATTACTCGAG
65 ATAAAATAAATTAGGGTTTAGGGTTA-TAGAG
*
10101769 TAAATTAATTATAAATTTTTTAAAAAATTAGATTAGGGTTTAATG-TTACGGGTTTTTAAGGAAA
1 TAAATTAATTATAAA-TTTTTAAAAAATTAGATTAGGGTTTAGTGTTTA-GGGTTTTTAAGGAAA
* * *
10101833 AATAAAATAAAATAGGGTTTATGGTTACTTGAG
64 AATAAAATAAATTAGGGTTTAGGGTTA-TAGAG
*
10101866 -AAATTAATTATAAATTTTTAAAAAAATTAGGTTAGGGTTTAGTGTTTAGGGTTTTTAAGGAAAA
1 TAAATTAATTATAAATTTTT-AAAAAATTAGATTAGGGTTTAGTGTTTAGGGTTTTTAAGGAAAA
* *
10101930 ATTAAAATAAATTAGGGTTTGGGGTT-TAGGG
65 A-TAAAATAAATTAGGGTTTAGGGTTATAGAG
*
10101961 TTAATTAAATTAT
1 TAAATT-AATTAT
10101974 TTGTTAATTT
Statistics
Matches: 174, Mismatches: 23, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
95 8 0.05
96 72 0.41
97 65 0.37
98 29 0.17
ACGTcount: A:0.40, C:0.03, G:0.18, T:0.40
Consensus pattern (95 bp):
TAAATTAATTATAAATTTTTAAAAAATTAGATTAGGGTTTAGTGTTTAGGGTTTTTAAGGAAAAA
TAAAATAAATTAGGGTTTAGGGTTATAGAG
Found at i:10102232 original size:127 final size:126
Alignment explanation
Indices: 10102002--10102272 Score: 434
Period size: 127 Copynumber: 2.1 Consensus size: 126
10101992 CCCACGTGGA
* *
10102002 TTTGCTACAGTAGTTACTGAAAAAATAATTTTGAGAAGACGTTTCTGAGCAAATAGTGTCAAAAA
1 TTTGCTACAGTAGTTCCTGAAAAAATAATTTCGAGAAGACGTTTCTGAGCAAATAGTGTCAAAAA
*
10102067 CGCTTTAAGCAAGATGCATTGTCAGCAAAAGTAATGAAAGAAGCTCCCACGTGGATGCTCT
66 CGCTTTAAGCAAGATGCATTGTCAGCAAAAGTAATGAAAGAAGCTCCCACGTGGACGCTCT
*
10102128 TTTGCTATAGTAGTTCCTGAAAAAAATAATTTCGAGAAGACGTTTCTGAGCAAATAGTGTCAAAA
1 TTTGCTACAGTAGTTCCTG-AAAAAATAATTTCGAGAAGACGTTTCTGAGCAAATAGTGTCAAAA
* * * * * *
10102193 ACGCTTTAAGTAGGATGCTTTGTTAGCAAAAGTACTGAAAGAAGCTCCCATGTGGACGCTCT
65 ACGCTTTAAGCAAGATGCATTGTCAGCAAAAGTAATGAAAGAAGCTCCCACGTGGACGCTCT
*
10102255 TTTACTACAGTAGTTCCT
1 TTTGCTACAGTAGTTCCT
10102273 ATTTGGCCTG
Statistics
Matches: 132, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
126 17 0.13
127 115 0.87
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.29
Consensus pattern (126 bp):
TTTGCTACAGTAGTTCCTGAAAAAATAATTTCGAGAAGACGTTTCTGAGCAAATAGTGTCAAAAA
CGCTTTAAGCAAGATGCATTGTCAGCAAAAGTAATGAAAGAAGCTCCCACGTGGACGCTCT
Found at i:10104400 original size:55 final size:55
Alignment explanation
Indices: 10104341--10104505 Score: 192
Period size: 55 Copynumber: 3.2 Consensus size: 55
10104331 AAAGAATTTC
10104341 TATTTTATTAAAAATATTAAAGTAAATTATAATTACTTTATTCAAAACAACGTTT
1 TATTTTATTAAAAATATTAAAGTAAATTATAATTACTTTATTCAAAACAACGTTT
* * * * * *
10104396 TATTTTATT---AA-ATGAAA-T-AA-TAT-A--GC-TTATTTAAAAGAA-TTTC
1 TATTTTATTAAAAATATTAAAGTAAATTATAATTACTTTATTCAAAACAACGTTT
10104439 TATTTTATTAAAAATATTAAAGTAAATTATAATTACTTTATTCAAAACAACGTTT
1 TATTTTATTAAAAATATTAAAGTAAATTATAATTACTTTATTCAAAACAACGTTT
10104494 TATTTTATTAAA
1 TATTTTATTAAA
10104506 TAAAATAATA
Statistics
Matches: 86, Mismatches: 12, Indels: 24
0.70 0.10 0.20
Matches are distributed among these distances:
43 11 0.13
44 11 0.13
45 1 0.01
46 2 0.02
47 6 0.07
48 4 0.05
49 4 0.05
50 4 0.05
51 6 0.07
52 2 0.02
53 1 0.01
54 11 0.13
55 23 0.27
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.45
Consensus pattern (55 bp):
TATTTTATTAAAAATATTAAAGTAAATTATAATTACTTTATTCAAAACAACGTTT
Found at i:10104434 original size:98 final size:98
Alignment explanation
Indices: 10104323--10104518 Score: 374
Period size: 98 Copynumber: 2.0 Consensus size: 98
10104313 AAAATATTGC
10104323 CTTATATAAAAGAATTTCTATTTTATTAAAAATATTAAAGTAAATTATAATTACTTTATTCAAAA
1 CTTATATAAAAGAATTTCTATTTTATTAAAAATATTAAAGTAAATTATAATTACTTTATTCAAAA
*
10104388 CAACGTTTTATTTTATTAAATGAAATAATATAG
66 CAACGTTTTATTTTATTAAATAAAATAATATAG
*
10104421 CTTATTTAAAAGAATTTCTATTTTATTAAAAATATTAAAGTAAATTATAATTACTTTATTCAAAA
1 CTTATATAAAAGAATTTCTATTTTATTAAAAATATTAAAGTAAATTATAATTACTTTATTCAAAA
10104486 CAACGTTTTATTTTATTAAATAAAATAATATAG
66 CAACGTTTTATTTTATTAAATAAAATAATATAG
10104519 AAATATTCAA
Statistics
Matches: 96, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
98 96 1.00
ACGTcount: A:0.46, C:0.06, G:0.05, T:0.43
Consensus pattern (98 bp):
CTTATATAAAAGAATTTCTATTTTATTAAAAATATTAAAGTAAATTATAATTACTTTATTCAAAA
CAACGTTTTATTTTATTAAATAAAATAATATAG
Found at i:10104586 original size:58 final size:56
Alignment explanation
Indices: 10104421--10104587 Score: 137
Period size: 58 Copynumber: 2.9 Consensus size: 56
10104411 AATAATATAG
* * *
10104421 CTTATTTAAAAGAATTTCTATTTTATTAAAAATATTAAAGTAAA-TT--ATAATTAC
1 CTTATTTAAAAGAATTTCTATTTTATTATAAATA-AAAAGTAAATTTCAAAAATTAC
* * * * *
10104475 TTTATTCAAAACAACGTTT-TATTTTATTAAATAAAATAATATAG-AAATATTCAAAATATTGC
1 CTTATTTAAAAGAA--TTTCTATTTTATT--AT-AAATAA-AAAGTAAAT-TTCAAAA-ATTAC
10104537 CTTATTTAAAAGAATTTCTATTTTATTATAAATACAAAAGTAAATTTCAAA
1 CTTATTTAAAAGAATTTCTATTTTATTATAAATA-AAAAGTAAATTTCAAA
10104588 GTAAATTACA
Statistics
Matches: 87, Mismatches: 12, Indels: 24
0.71 0.10 0.20
Matches are distributed among these distances:
54 11 0.13
55 9 0.10
56 3 0.03
57 4 0.05
58 22 0.25
59 9 0.10
60 3 0.03
61 11 0.13
62 15 0.17
ACGTcount: A:0.47, C:0.07, G:0.04, T:0.42
Consensus pattern (56 bp):
CTTATTTAAAAGAATTTCTATTTTATTATAAATAAAAAGTAAATTTCAAAAATTAC
Found at i:10105091 original size:18 final size:18
Alignment explanation
Indices: 10105065--10105107 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
10105055 GACTAGAAAA
* * *
10105065 AGGAAACATATAAGGGTT
1 AGGATACATAAAAGGGCT
10105083 AGGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
10105101 AGGATAC
1 AGGATAC
10105108 GGACCTGGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.44, C:0.09, G:0.28, T:0.19
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:10105743 original size:14 final size:14
Alignment explanation
Indices: 10105724--10105761 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
10105714 TTATATACAT
10105724 AATACTAAATCCTA
1 AATACTAAATCCTA
* *
10105738 AATACTGAATACTA
1 AATACTAAATCCTA
10105752 AATAC-AAATC
1 AATACTAAATC
10105762 AACTATCTCA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
13 3 0.15
14 17 0.85
ACGTcount: A:0.53, C:0.18, G:0.03, T:0.26
Consensus pattern (14 bp):
AATACTAAATCCTA
Found at i:10107086 original size:40 final size:40
Alignment explanation
Indices: 10107042--10107169 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
10107032 AAAACGCTTC
10107042 CTCAAGGAAGCGCTTTGTCCACGTGGACACAAAGCGCACT
1 CTCAAGGAAGCGCTTTGTCCACGTGGACACAAAGCGCACT
* * * * *
10107082 CTCAAGGACGTGTTTTCTGTCCATGTGGACA-AAA-CGC-TT
1 CTCAAGGAAGCG-CTT-TGTCCACGTGGACACAAAGCGCACT
10107121 CCTCAAGGAAGCGCTTTGTCCACGTGGACACAAAGCGCACT
1 -CTCAAGGAAGCGCTTTGTCCACGTGGACACAAAGCGCACT
10107162 CTCAAGGA
1 CTCAAGGA
10107170 CGTGTTTTCT
Statistics
Matches: 72, Mismatches: 10, Indels: 12
0.77 0.11 0.13
Matches are distributed among these distances:
38 13 0.18
39 6 0.08
40 34 0.47
41 6 0.08
42 13 0.18
ACGTcount: A:0.27, C:0.28, G:0.24, T:0.21
Consensus pattern (40 bp):
CTCAAGGAAGCGCTTTGTCCACGTGGACACAAAGCGCACT
Found at i:10107110 original size:42 final size:42
Alignment explanation
Indices: 10107057--10107192 Score: 174
Period size: 40 Copynumber: 3.3 Consensus size: 42
10107047 GGAAGCGCTT
10107057 TGTCCACGTGGACACAAAGCGCACTCTCAAGGACGTGTTTTC
1 TGTCCACGTGGACACAAAGCGCACTCTCAAGGACGTGTTTTC
* * * * *
10107099 TGTCCATGTGGACA-AAA-CGC-TTCCTCAAGGAAGCG-CTT-
1 TGTCCACGTGGACACAAAGCGCACT-CTCAAGGACGTGTTTTC
10107137 TGTCCACGTGGACACAAAGCGCACTCTCAAGGACGTGTTTTC
1 TGTCCACGTGGACACAAAGCGCACTCTCAAGGACGTGTTTTC
*
10107179 TGTCCATGTGGACA
1 TGTCCACGTGGACA
10107193 AAGCGCTTCC
Statistics
Matches: 77, Mismatches: 11, Indels: 12
0.77 0.11 0.12
Matches are distributed among these distances:
38 13 0.17
39 6 0.08
40 26 0.34
41 6 0.08
42 26 0.34
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (42 bp):
TGTCCACGTGGACACAAAGCGCACTCTCAAGGACGTGTTTTC
Found at i:10107165 original size:80 final size:80
Alignment explanation
Indices: 10107032--10107213 Score: 337
Period size: 80 Copynumber: 2.3 Consensus size: 80
10107022 CGACACGGGG
10107032 AAAACGCTTCCTCAAGGAAGCGCTTTGTCCACGTGGACACAAAGCGCACTCTCAAGGACGTGTTT
1 AAAACGCTTCCTCAAGGAAGCGCTTTGTCCACGTGGACACAAAGCGCACTCTCAAGGACGTGTTT
10107097 TCTGTCCATGTGGAC
66 TCTGTCCATGTGGAC
10107112 AAAACGCTTCCTCAAGGAAGCGCTTTGTCCACGTGGACACAAAGCGCACTCTCAAGGACGTGTTT
1 AAAACGCTTCCTCAAGGAAGCGCTTTGTCCACGTGGACACAAAGCGCACTCTCAAGGACGTGTTT
10107177 TCTGTCCATGTGGAC
66 TCTGTCCATGTGGAC
* **
10107192 AAAGCGCTTCCTTGAGGAAGCG
1 AAAACGCTTCCTCAAGGAAGCG
10107214 TTTTCCTGCT
Statistics
Matches: 99, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
80 99 1.00
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (80 bp):
AAAACGCTTCCTCAAGGAAGCGCTTTGTCCACGTGGACACAAAGCGCACTCTCAAGGACGTGTTT
TCTGTCCATGTGGAC
Found at i:10107217 original size:40 final size:40
Alignment explanation
Indices: 10107036--10107218 Score: 153
Period size: 40 Copynumber: 4.6 Consensus size: 40
10107026 ACGGGGAAAA
* *
10107036 CGCTTCCTCAAGGAAGCG-CTT-TGTCCACGTGGACACAAAG
1 CGCTTCCTCAAGGAAGCGTTTTCTGTCCATGTGG--ACAAAG
* * * *
10107076 CGC-ACTCTCAAGGACGTGTTTTCTGTCCATGTGGACAAAA
1 CGCTTC-CTCAAGGAAGCGTTTTCTGTCCATGTGGACAAAG
* *
10107116 CGCTTCCTCAAGGAAGCG-CTT-TGTCCACGTGGACACAAAG
1 CGCTTCCTCAAGGAAGCGTTTTCTGTCCATGTGG--ACAAAG
* * *
10107156 CGC-ACTCTCAAGGACGTGTTTTCTGTCCATGTGGACAAAG
1 CGCTTC-CTCAAGGAAGCGTTTTCTGTCCATGTGGACAAAG
**
10107196 CGCTTCCTTGAGGAAGCGTTTTC
1 CGCTTCCTCAAGGAAGCGTTTTC
10107219 CTGCTTTGTC
Statistics
Matches: 111, Mismatches: 22, Indels: 20
0.73 0.14 0.13
Matches are distributed among these distances:
38 10 0.09
39 4 0.04
40 71 0.64
41 6 0.05
42 20 0.18
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (40 bp):
CGCTTCCTCAAGGAAGCGTTTTCTGTCCATGTGGACAAAG
Done.