Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 35 of 222
Found at i:10538699 original size:20 final size:20
Alignment explanation
Indices: 10538636--10538699 Score: 64
Period size: 20 Copynumber: 3.3 Consensus size: 20
10538626 GATAACTTTA
10538636 TTTTATTATGTTTTATCATA-
1 TTTTATTA-GTTTTATCATAT
*
10538656 TTTTATT--TATTTAT-TTAT
1 TTTTATTAGT-TTTATCATAT
*
10538674 TATTATTAGTTTTATCATAT
1 TTTTATTAGTTTTATCATAT
10538694 TTTTAT
1 TTTTAT
10538700 CTTAAATAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
17 3 0.09
18 11 0.31
19 5 0.14
20 16 0.46
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.69
Consensus pattern (20 bp):
TTTTATTAGTTTTATCATAT
Found at i:10540934 original size:23 final size:25
Alignment explanation
Indices: 10540905--10540950 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
10540895 CTTGATTCTT
10540905 AAAAA-TTTAAAA-TTAATTTTTTA
1 AAAAATTTTAAAAGTTAATTTTTTA
*
10540928 AAAAATTTTAAAAGTTTATTTTT
1 AAAAATTTTAAAAGTTAATTTTT
10540951 CAATTAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 5 0.25
24 7 0.35
25 8 0.40
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (25 bp):
AAAAATTTTAAAAGTTAATTTTTTA
Found at i:10541079 original size:20 final size:20
Alignment explanation
Indices: 10541056--10541104 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
10541046 ATTTATTTAT
*
10541056 TAAAATAATAATTTTATAAA
1 TAAAATAATAATCTTATAAA
10541076 TAAAATAATAATCTTATAAA
1 TAAAATAATAATCTTATAAA
*
10541096 CAAAATAAT
1 TAAAATAAT
10541105 TCAAGGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (20 bp):
TAAAATAATAATCTTATAAA
Found at i:10547275 original size:10 final size:10
Alignment explanation
Indices: 10547238--10547280 Score: 59
Period size: 10 Copynumber: 4.3 Consensus size: 10
10547228 AATAAGGCGC
*
10547238 ATACATATAT
1 ATACACATAT
*
10547248 ATACACACAT
1 ATACACATAT
*
10547258 ACACACATAT
1 ATACACATAT
10547268 ATACACATAT
1 ATACACATAT
10547278 ATA
1 ATA
10547281 TTACATTATT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 28 1.00
ACGTcount: A:0.51, C:0.21, G:0.00, T:0.28
Consensus pattern (10 bp):
ATACACATAT
Found at i:10550646 original size:20 final size:20
Alignment explanation
Indices: 10550621--10550661 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
10550611 TGGTTGTTTA
10550621 TAGTCATCATAAGTAGCAAG
1 TAGTCATCATAAGTAGCAAG
10550641 TAGTCATCATAAGTAGCAAG
1 TAGTCATCATAAGTAGCAAG
10550661 T
1 T
10550662 TGTACTGTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.27
Consensus pattern (20 bp):
TAGTCATCATAAGTAGCAAG
Found at i:10553345 original size:18 final size:18
Alignment explanation
Indices: 10553324--10553359 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
10553314 CCCACACTTA
10553324 GAATCGTCCTCGCACTCT
1 GAATCGTCCTCGCACTCT
10553342 GAATCGTCCTCGCACTCT
1 GAATCGTCCTCGCACTCT
10553360 ATCAATGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.39, G:0.17, T:0.28
Consensus pattern (18 bp):
GAATCGTCCTCGCACTCT
Found at i:10557161 original size:26 final size:26
Alignment explanation
Indices: 10557114--10557166 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
10557104 TTAAAATTTT
* *
10557114 TTCGAATCGAGTCGAGTGGAATAGAA
1 TTCGAATCGAGTCGAATCGAATAGAA
* * *
10557140 TTCGATTCGATTCGAATCGAATTGAA
1 TTCGAATCGAGTCGAATCGAATAGAA
10557166 T
1 T
10557167 ATATTTGTTC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (26 bp):
TTCGAATCGAGTCGAATCGAATAGAA
Found at i:10557332 original size:9 final size:9
Alignment explanation
Indices: 10557318--10557342 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
10557308 AGTCCAAGTA
10557318 AACAACAAT
1 AACAACAAT
10557327 AACAACAAT
1 AACAACAAT
10557336 AACAACA
1 AACAACA
10557343 CAACAAGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (9 bp):
AACAACAAT
Found at i:10559895 original size:70 final size:70
Alignment explanation
Indices: 10559782--10559922 Score: 282
Period size: 70 Copynumber: 2.0 Consensus size: 70
10559772 AAGTAAACAA
10559782 AGAAATTTAACAATAGTAAAGTATTTAATCATGTCACGTATGAAAAGGTGAATCCTATCATCGAC
1 AGAAATTTAACAATAGTAAAGTATTTAATCATGTCACGTATGAAAAGGTGAATCCTATCATCGAC
10559847 CTTAG
66 CTTAG
10559852 AGAAATTTAACAATAGTAAAGTATTTAATCATGTCACGTATGAAAAGGTGAATCCTATCATCGAC
1 AGAAATTTAACAATAGTAAAGTATTTAATCATGTCACGTATGAAAAGGTGAATCCTATCATCGAC
10559917 CTTAG
66 CTTAG
10559922 A
1 A
10559923 AATCTTGATT
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 71 1.00
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.30
Consensus pattern (70 bp):
AGAAATTTAACAATAGTAAAGTATTTAATCATGTCACGTATGAAAAGGTGAATCCTATCATCGAC
CTTAG
Found at i:10562488 original size:22 final size:23
Alignment explanation
Indices: 10562463--10562508 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
10562453 AGGGTACCTA
*
10562463 AAAATTAAATC-TCTAAGATTGC
1 AAAATCAAATCTTCTAAGATTGC
*
10562485 AAAATCATATCTTCTAAGATTGC
1 AAAATCAAATCTTCTAAGATTGC
10562508 A
1 A
10562509 TTTCATATCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.43, C:0.15, G:0.09, T:0.33
Consensus pattern (23 bp):
AAAATCAAATCTTCTAAGATTGC
Found at i:10563368 original size:132 final size:132
Alignment explanation
Indices: 10562956--10563368 Score: 616
Period size: 131 Copynumber: 3.1 Consensus size: 132
10562946 AATTGGTAAT
* * *
10562956 TTCAACCTGCTCCACTG-TAACTTCAGGGAGATAAGG-TTGGTGGCTTAAATCTGCTTCTCTACT
1 TTCAACCTACTCCACTGCT-AC-TCAGGGAGAT-AGGACTGGTGGCTTAAATCTGCTTCCCTACT
* * *
10563019 TCCTCGGGAAGATAAGACTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATATA
63 ACCTCGGGAAGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTA
10563084 CAATC
128 CAATC
* * * *
10563089 TTCAACCTACTCCACTACTGCTCAGGGAGATAGAACTGGTGGCTTAAATCTGCTTCCC-ACTATC
1 TTCAACCTACTCCACTGCTACTCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACC
* * * * *
10563153 TCGGGAAGATAAGATTCGCCGTCTTCGATCTGATTCACTATTGCTTAAGGAGACAGGATCTACAA
66 TCGGGAAGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAA
*
10563218 TT
131 TC
10563220 TTCAACCTACTCCACTGCTACTCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACC
1 TTCAACCTACTCCACTGCTACTCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACC
* *
10563285 TTGGGAAGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTACAA
66 TCGGGAAGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAA
10563350 TC
131 TC
10563352 TTCAACCTACTCCACTG
1 TTCAACCTACTCCACTG
10563369 TAAACTCAGA
Statistics
Matches: 249, Mismatches: 28, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
131 120 0.48
132 112 0.45
133 16 0.06
134 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (132 bp):
TTCAACCTACTCCACTGCTACTCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACC
TCGGGAAGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAA
TC
Found at i:10563551 original size:89 final size:89
Alignment explanation
Indices: 10563361--10563565 Score: 221
Period size: 89 Copynumber: 2.3 Consensus size: 89
10563351 CTTCAACCTA
* * * * * *
10563361 CTCCACTGTAAACTCAGAGAGGCAAGGCTGGTGTTTTCGATCTGCTTCACTGCTAGTACAGGAAG
1 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTACTTCACTGCTAATACAAGAAG
* * * *
10563426 ACAAGATCTGCTGTTTTCAGTCTG
66 ACAAGATCTGCTATCTTCAATATG
*** * * * ** *
10563450 CTTTGCTACAAACTCAGGGGGGCAAGGTTGGTGTCTTCGATCTACTTCGTTGTTAATACAAGAAG
1 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTACTTCACTGCTAATACAAGAAG
* *
10563515 ACAAGATTTGTTATCTTCAATATG
66 ACAAGATCTGCTATCTTCAATATG
10563539 CTCCACTGCAAACTCAGGGAGGCAAGG
1 CTCCACTGCAAACTCAGGGAGGCAAGG
10563566 ATTTGTAGCT
Statistics
Matches: 90, Mismatches: 26, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
89 90 1.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (89 bp):
CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTACTTCACTGCTAATACAAGAAG
ACAAGATCTGCTATCTTCAATATG
Found at i:10563603 original size:45 final size:45
Alignment explanation
Indices: 10563517--10564319 Score: 426
Period size: 45 Copynumber: 18.2 Consensus size: 45
10563507 ACAAGAAGAC
* * * **
10563517 AAGATTTGTTATCTTCAATATGCTCCACTGCAAAC-TCAGGGAGGC
1 AAGATTTGCTAGCTTCAATCTGCTCCACTGC-AACTTCAGGGAGAT
* * *
10563562 AAGGATTTG-TAGCTTCAATCTGTTCTACTGCAACTTTAGGGAGAT
1 AA-GATTTGCTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGAT
* * * * *
10563607 AAGATTCGCTATCTTCAGTTTGCTCTACTGCAACTTCAGGGAGAT
1 AAGATTTGCTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGAT
* * *
10563652 AAGATTAT--TGGCTTTAATCTGCTCCACTGCAACTTTAGGGAGAT
1 AAGATT-TGCTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGAT
* * * *
10563696 AAGATTTGC---CAT-GATCTGCTCTACTGCAACTTCAGAGAGAT
1 AAGATTTGCTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGAT
* * * * * * *
10563737 AAGATCTGTGATTTATAGCTTTAATCTGTTTCACTGTAATTTCAGGGAAAT
1 AAGAT-T-TG----CTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGAT
* * * * * *
10563788 AAGAATCGCTATCTTCAGA-CTGCTCCACTACAACTTTAGAGAGAT
1 AAGATTTGCTAGCTTCA-ATCTGCTCCACTGCAACTTCAGGGAGAT
* * * * ***
10563833 AAGACTTG-TAACTTTAATCTGCTCCACTGCAACCTCAAAAAGAT
1 AAGATTTGCTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGAT
* * * * *
10563877 AGGATTAT--TGGCTTTAATCTGCTCTACTACAACTTCAGGGAGAT
1 AAGATT-TGCTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGAT
* * * * * *
10563921 AAGATTTACCATCTTCAGTCTAC-CCTACTGCAACTTCAGGGGGAT
1 AAGATTTGCTAGCTTCAATCTGCTCC-ACTGCAACTTCAGGGAGAT
* * * ** * *
10563966 AATACTTGTTTTCTTCAGTCTACTCCACTGCAACTTCAGGGAGAT
1 AAGATTTGCTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGAT
* * * *
10564011 AAGACTTG-TAACTTCAAT-TCGCTCCATTGCAACTTCAGAGAGAT
1 AAGATTTGCTAGCTTCAATCT-GCTCCACTGCAACTTCAGGGAGAT
* * *
10564055 AGGATTAT--TGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGAT
1 AAGATT-TGCTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGAT
* * * * * *
10564099 AAGATTTGCCATCTTCAGTTTGTTCCACTGCAACTTCAGGGGGAT
1 AAGATTTGCTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGAT
* * ** * * * ** *
10564144 AATAGTTGCTTTCTTCAGTATGCTTCACTATAACTTCAGGGGGAT
1 AAGATTTGCTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGAT
* ** * *
10564189 AAGACTTGCTTTCTTCAGTTTGCTCCACTGCAACTTCAGGGAGAT
1 AAGATTTGCTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGAT
*
10564234 -A-A---G--A-CTTC---C-GCTCCACTGCAACTTCAGGAAGAT
1 AAGATTTGCTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGAT
* * * * *
10564267 AGGATTAT--TGGCTTTAATCTGCTCCACTACAACTTTAGGGAGAT
1 AAGATT-TGCTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGAT
10564311 AAGATTTGC
1 AAGATTTGC
10564320 CATCTTCTTC
Statistics
Matches: 582, Mismatches: 134, Indels: 84
0.73 0.17 0.10
Matches are distributed among these distances:
33 23 0.04
35 1 0.00
37 4 0.01
40 4 0.01
41 30 0.05
42 3 0.01
43 10 0.02
44 201 0.35
45 268 0.46
46 9 0.02
49 1 0.00
50 3 0.01
51 25 0.04
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (45 bp):
AAGATTTGCTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGAT
Found at i:10563631 original size:90 final size:89
Alignment explanation
Indices: 10563517--10564326 Score: 285
Period size: 89 Copynumber: 9.2 Consensus size: 89
10563507 ACAAGAAGAC
* * *
10563517 AAGATTTGTTATCTTCAATATGCTCCACTGCAAAC-TCAGGGAGGCAAGGATT-TGTAGCTTCAA
1 AAGATTCGCTATCTTCAATATGCTCCACTGC-AACTTCAGGGAGACAA-GATTAT-TAGCTTCAA
* *
10563580 TCTGTTCTACTGCAACTTTAGGGAGAT
63 TCTGCTCCACTGCAACTTTAGGGAGAT
* * * * * *
10563607 AAGATTCGCTATCTTCAGTTTGCTCTACTGCAACTTCAGGGAGATAAGATTATTGGCTTTAATCT
1 AAGATTCGCTATCTTCAATATGCTCCACTGCAACTTCAGGGAGACAAGATTATTAGCTTCAATCT
10563672 GCTCCACTGCAACTTTAGGGAGAT
66 GCTCCACTGCAACTTTAGGGAGAT
* * * * * * *
10563696 AAGATTTGC---CAT-GATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTATAGCT
1 AAGATTCGCTATCTTCAATATGCTCCACTGCAACTTCAGGGAGACAAGA--T-T-A--T-TAGCT
* * * * *
10563757 TTAATCTGTTTCACTGTAA-TTTCAGGGAAAT
59 TCAATCTGCTCCACTGCAACTTT-AGGGAGAT
* * * * * * * * *
10563788 AAGAATCGCTATCTTCAGA-CTGCTCCACTACAACTTTAGAGAGATAAGACTT-GTAACTTTAAT
1 AAGATTCGCTATCTTCA-ATATGCTCCACTGCAACTTCAGGGAGACAAGA-TTATTAGCTTCAAT
* * ***
10563851 CTGCTCCACTGCAACCTCAAAAAGAT
64 CTGCTCCACTGCAACTTTAGGGAGAT
* ** ** * * * * * ** * *
10563877 AGGATT-ATTGGCTTTAATCTGCTCTACTACAACTTCAGGGAGATAAGATTTACCATCTTCAGTC
1 AAGATTCGCTATCTTCAATATGCTCCACTGCAACTTCAGGGAGACAAGA-TTATTAGCTTCAATC
* * *
10563941 TAC-CCTACTGCAACTTCAGGGGGAT
65 TGCTCC-ACTGCAACTTTAGGGAGAT
* * * * * * * * *
10563966 AATACTT-GTTTTCTTCAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTT-GTAACTTCAAT
1 AAGA-TTCGCTATCTTCAATATGCTCCACTGCAACTTCAGGGAGACAAGA-TTATTAGCTTCAAT
* * *
10564029 -TCGCTCCATTGCAACTTCAGAGAGAT
64 CT-GCTCCACTGCAACTTTAGGGAGAT
* ** ** * * * * * *
10564055 AGGATT-ATTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-TGCCATCTTCAGT
1 AAGATTCGCTATCTTCAATATGCTCCACTGCAACTTCAGGGAGACAAGATTAT--TAGCTTCAAT
* * * *
10564118 TTGTTCCACTGCAACTTCAGGGGGAT
64 CTGCTCCACTGCAACTTTAGGGAGAT
* * * * ** * * * * *
10564144 AATAGTT-GCTTTCTTCAGTATGCTTCACTATAACTTCAGGGGGATAAGACTTGCTT-TCTTCAG
1 AAGA-TTCGCTATCTTCAATATGCTCCACTGCAACTTCAGGGAGACAAGA-TT-ATTAGCTTCAA
* *
10564207 TTTGCTCCACTGCAACTTCAGGGAGAT
63 TCTGCTCCACTGCAACTTTAGGGAGAT
* * * * *
10564234 AAGA----CT-TC--C-----GCTCCACTGCAACTTCAGGAAGATAGGATTATTGGCTTTAATCT
1 AAGATTCGCTATCTTCAATATGCTCCACTGCAACTTCAGGGAGACAAGATTATTAGCTTCAATCT
*
10564287 GCTCCACTACAACTTTAGGGAGAT
66 GCTCCACTGCAACTTTAGGGAGAT
* *
10564311 AAGATTTGCCATCTTC
1 AAGATTCGCTATCTTC
10564327 TTCAATCCAT
Statistics
Matches: 555, Mismatches: 128, Indels: 80
0.73 0.17 0.10
Matches are distributed among these distances:
76 2 0.00
77 34 0.06
78 22 0.04
81 1 0.00
82 2 0.00
83 1 0.00
84 1 0.00
85 31 0.06
86 4 0.01
87 4 0.01
88 76 0.14
89 156 0.28
90 147 0.26
91 6 0.01
92 34 0.06
93 1 0.00
94 1 0.00
95 4 0.01
96 27 0.05
97 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (89 bp):
AAGATTCGCTATCTTCAATATGCTCCACTGCAACTTCAGGGAGACAAGATTATTAGCTTCAATCT
GCTCCACTGCAACTTTAGGGAGAT
Found at i:10564015 original size:178 final size:178
Alignment explanation
Indices: 10563799--10564222 Score: 573
Period size: 178 Copynumber: 2.4 Consensus size: 178
10563789 AGAATCGCTA
* * * *
10563799 TCTTCAGACTGCTCCACTACAACTTTAGAGAGATAAGACTTGTAACTTTAA-TCTGCTCCACTGC
1 TCTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTCAATTC-GCTCCACTGC
*
10563863 AACCTCAAAAAGATAGGATTATTGGCTTTAATCTGCTCTACTACAACTTCAGGGAGATAAGATTT
65 AACCTCAAAAAGATAGGATTATTGGCTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGATTT
*
10563928 ACCATCTTCAGTCT-ACCCTACTGCAACTTCAGGGGGATAATACTTGTTT
130 ACCATCTTCAGTCTGACCC-ACTGCAACTTCAGGGGGATAATACTTGCTT
* * *
10563977 TCTTCAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAATTCGCTCCATTGCA
1 TCTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTCAATTCGCTCCACTGCA
* * * * *
10564042 ACTTCAGAGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG
66 ACCTCAAAAAGATAGGATTATTGGCTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTA
* ** *
10564107 CCATCTTCAGTTTGTTCCACTGCAACTTCAGGGGGATAATAGTTGCTT
131 CCATCTTCAGTCTGACCCACTGCAACTTCAGGGGGATAATACTTGCTT
* * * * ** * *
10564155 TCTTCAGTATGCTTCACTATAACTTCAGGGGGATAAGACTTGCTTTCTTCAGTTTGCTCCACTGC
1 TCTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTTG-TAACTTCAATTCGCTCCACTGC
10564220 AAC
65 AAC
10564223 TTCAGGGAGA
Statistics
Matches: 214, Mismatches: 29, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
178 190 0.89
179 24 0.11
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (178 bp):
TCTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTCAATTCGCTCCACTGCA
ACCTCAAAAAGATAGGATTATTGGCTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTA
CCATCTTCAGTCTGACCCACTGCAACTTCAGGGGGATAATACTTGCTT
Found at i:10564672 original size:24 final size:24
Alignment explanation
Indices: 10564645--10564723 Score: 131
Period size: 24 Copynumber: 3.3 Consensus size: 24
10564635 AGATTGCCCA
*
10564645 CACTGTAATCTTTAAGGTTCAATC
1 CACTGTAATCTTCAAGGTTCAATC
*
10564669 CACTGTAATCTTCAAGGATCAATC
1 CACTGTAATCTTCAAGGTTCAATC
*
10564693 TACTGTAATCTTCAAGGTTCAATC
1 CACTGTAATCTTCAAGGTTCAATC
10564717 CACTGTA
1 CACTGTA
10564724 CTTTTGGGAC
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.34
Consensus pattern (24 bp):
CACTGTAATCTTCAAGGTTCAATC
Found at i:10565666 original size:15 final size:14
Alignment explanation
Indices: 10565635--10565677 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
10565625 GCCTCTCCTC
*
10565635 TTTTTCTTTTTTCTT
1 TTTTTATTTTTT-TT
10565650 TTTTTATTTATTTTT
1 TTTTTATTT-TTTTT
*
10565665 TTTTGATTTTTTT
1 TTTTTATTTTTTT
10565678 GTCTTAAGGC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 4 0.16
15 18 0.72
16 3 0.12
ACGTcount: A:0.07, C:0.05, G:0.02, T:0.86
Consensus pattern (14 bp):
TTTTTATTTTTTTT
Found at i:10570936 original size:16 final size:16
Alignment explanation
Indices: 10570900--10570936 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
10570890 AAAACATCTT
10570900 AAAAATAAATAGTATA
1 AAAAATAAATAGTATA
* *
10570916 TAAAATAGATAGTATA
1 AAAAATAAATAGTATA
10570932 AAAAA
1 AAAAA
10570937 ATTTGCAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (16 bp):
AAAAATAAATAGTATA
Found at i:10571561 original size:23 final size:22
Alignment explanation
Indices: 10571518--10571575 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
10571508 AAAGGGTATC
* *
10571518 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
10571539 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
10571562 TACATATCATATCT
1 TACAAATCATATCT
10571576 AAGATTGCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.09
22 18 0.56
23 11 0.34
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:10571578 original size:19 final size:20
Alignment explanation
Indices: 10571531--10571588 Score: 64
Period size: 19 Copynumber: 2.8 Consensus size: 20
10571521 AAATTAAATC
*
10571531 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-ATATCATA--T
10571554 TCTAAGATTACATATCATA-
1 TCTAAGATTACATATCATAT
*
10571573 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
10571589 CTTGAAGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.45
22 7 0.21
23 11 0.33
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (20 bp):
TCTAAGATTACATATCATAT
Found at i:10573313 original size:25 final size:26
Alignment explanation
Indices: 10573269--10573320 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
10573259 TAATTTTACC
*
10573269 TATGACAATTTTACCTCTGGTAAAAT
1 TATGACAATTTTACCCCTGGTAAAAT
10573295 TATGACAA-TTTACCCCTGGTAAAAT
1 TATGACAATTTTACCCCTGGTAAAAT
10573320 T
1 T
10573321 TCAAGAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.37
Consensus pattern (26 bp):
TATGACAATTTTACCCCTGGTAAAAT
Found at i:10573467 original size:6 final size:6
Alignment explanation
Indices: 10573453--10573487 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
10573443 AATCCATGTT
* *
10573453 CATTAC CATTTC CATTTT CATTTC CATTTC CATTT
1 CATTTC CATTTC CATTTC CATTTC CATTTC CATTT
10573488 TGAGAAAACC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.20, C:0.29, G:0.00, T:0.51
Consensus pattern (6 bp):
CATTTC
Found at i:10573472 original size:18 final size:18
Alignment explanation
Indices: 10573445--10573488 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
10573435 TTTTGAGAAA
*
10573445 TCCATGTTCATTACCATT
1 TCCATTTTCATTACCATT
*
10573463 TCCATTTTCATTTCCATT
1 TCCATTTTCATTACCATT
10573481 TCCATTTT
1 TCCATTTT
10573489 GAGAAAACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.18, C:0.27, G:0.02, T:0.52
Consensus pattern (18 bp):
TCCATTTTCATTACCATT
Found at i:10575821 original size:74 final size:74
Alignment explanation
Indices: 10575742--10575978 Score: 259
Period size: 74 Copynumber: 3.3 Consensus size: 74
10575732 TTGACGGAGG
* * *
10575742 TTGCGCCTAGCGCTAGCCGGATAAATTGACGAATAATTAGTGAGCCCAGCTCTAGTTGGATAAAC
1 TTGCGCCCAGCGCTAGTCGGATAAACTGACGAATAATTAGTGAGCCCAGCTCTAGTTGGATAAAC
10575807 CAACGATAT
66 CAACGATAT
* * * * * * * * **
10575816 TTGCGCCTAGTGCTAGTTGGATAGACCGACG---AA-T-GTGTGCCCAACACTAGTCAGATAAAC
1 TTGCGCCCAGCGCTAGTCGGATAAACTGACGAATAATTAGTGAGCCCAGCTCTAGTTGGATAAAC
** * *
10575876 TGACGAAAG
66 CAACGATAT
* * *
10575885 TTGCGCCCAGCGCTAATCGAATAAACTGACGAATAATTAGTGAGCCCAGCTCTAATTGGATAAAC
1 TTGCGCCCAGCGCTAGTCGGATAAACTGACGAATAATTAGTGAGCCCAGCTCTAGTTGGATAAAC
10575950 CAACGATAT
66 CAACGATAT
10575959 TTGCGCCCAGCGCTAGTCGG
1 TTGCGCCCAGCGCTAGTCGG
10575979 GCGAATCAAC
Statistics
Matches: 124, Mismatches: 34, Indels: 10
0.74 0.20 0.06
Matches are distributed among these distances:
69 50 0.40
70 1 0.01
71 2 0.02
72 2 0.02
73 1 0.01
74 68 0.55
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.23
Consensus pattern (74 bp):
TTGCGCCCAGCGCTAGTCGGATAAACTGACGAATAATTAGTGAGCCCAGCTCTAGTTGGATAAAC
CAACGATAT
Found at i:10575881 original size:34 final size:35
Alignment explanation
Indices: 10575843--10575918 Score: 84
Period size: 35 Copynumber: 2.2 Consensus size: 35
10575833 TGGATAGACC
* *
10575843 GACGAATG-TGTGCCCAACACTAGTC-AGATAAACT
1 GACGAATGTTGCGCCCAACACTAATCGA-ATAAACT
* * *
10575877 GACGAAAGTTGCGCCCAGCGCTAATCGAATAAACT
1 GACGAATGTTGCGCCCAACACTAATCGAATAAACT
10575912 GACGAAT
1 GACGAAT
10575919 AATTAGTGAG
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
34 7 0.21
35 26 0.76
36 1 0.03
ACGTcount: A:0.36, C:0.24, G:0.22, T:0.18
Consensus pattern (35 bp):
GACGAATGTTGCGCCCAACACTAATCGAATAAACT
Found at i:10575916 original size:69 final size:69
Alignment explanation
Indices: 10575673--10575918 Score: 204
Period size: 69 Copynumber: 3.5 Consensus size: 69
10575663 GCCAAAGAGT
** * * * *
10575673 TTGCGCCTAGATCTAGTTGGATAAACCGACAAATGTGTGCCCAGCACTAGCCAGATAAATTGACG
1 TTGCGCCTAGCGCTAGTCGGATAAACCGACGAATGTGTGCCCAGCACTAGTCAGATAAACTGACG
* *
10575738 GAGG
66 AAAG
* ** * * **
10575742 TTGCGCCTAGCGCTAGCCGGATAAATTGACGAATAATTAGTGAGCCCAGCTCTAGTTGGATAAAC
1 TTGCGCCTAGCGCTAGTCGGATAAACCGACG---AA-T-GTGTGCCCAGCACTAGTCAGATAAAC
** * *
10575807 CAACGATAT
61 TGACGAAAG
* * * *
10575816 TTGCGCCTAGTGCTAGTTGGATAGACCGACGAATGTGTGCCCAACACTAGTCAGATAAACTGACG
1 TTGCGCCTAGCGCTAGTCGGATAAACCGACGAATGTGTGCCCAGCACTAGTCAGATAAACTGACG
10575881 AAAG
66 AAAG
* * * *
10575885 TTGCGCCCAGCGCTAATCGAATAAACTGACGAAT
1 TTGCGCCTAGCGCTAGTCGGATAAACCGACGAAT
10575919 AATTAGTGAG
Statistics
Matches: 131, Mismatches: 41, Indels: 10
0.72 0.23 0.05
Matches are distributed among these distances:
69 77 0.59
70 1 0.01
71 2 0.02
72 2 0.02
73 1 0.01
74 48 0.37
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.22
Consensus pattern (69 bp):
TTGCGCCTAGCGCTAGTCGGATAAACCGACGAATGTGTGCCCAGCACTAGTCAGATAAACTGACG
AAAG
Found at i:10575930 original size:143 final size:143
Alignment explanation
Indices: 10575672--10575975 Score: 457
Period size: 143 Copynumber: 2.1 Consensus size: 143
10575662 CGCCAAAGAG
* *
10575672 TTTGCGCCTAGAT-CTAGTTGGATAAACCGACAAATGTGTGCCCAGCACTAGCCAGATAAATTGA
1 TTTGCGCCTAG-TGCTAGTTGGATAAACCGACAAATGTGTGCCCAACACTAGCCAGATAAACTGA
* * * * * * *
10575736 CGGAGGTTGCGCCTAGCGCTAGCCGGATAAATTGACGAATAATTAGTGAGCCCAGCTCTAGTTGG
65 CGAAAGTTGCGCCCAGCGCTAACCGAATAAACTGACGAATAATTAGTGAGCCCAGCTCTAATTGG
10575801 ATAAACCAACGATA
130 ATAAACCAACGATA
* * *
10575815 TTTGCGCCTAGTGCTAGTTGGATAGACCGACGAATGTGTGCCCAACACTAGTCAGATAAACTGAC
1 TTTGCGCCTAGTGCTAGTTGGATAAACCGACAAATGTGTGCCCAACACTAGCCAGATAAACTGAC
*
10575880 GAAAGTTGCGCCCAGCGCTAATCGAATAAACTGACGAATAATTAGTGAGCCCAGCTCTAATTGGA
66 GAAAGTTGCGCCCAGCGCTAACCGAATAAACTGACGAATAATTAGTGAGCCCAGCTCTAATTGGA
10575945 TAAACCAACGATA
131 TAAACCAACGATA
* *
10575958 TTTGCGCCCAGCGCTAGT
1 TTTGCGCCTAGTGCTAGT
10575976 CGGGCGAATC
Statistics
Matches: 145, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
142 1 0.01
143 144 0.99
ACGTcount: A:0.31, C:0.23, G:0.24, T:0.23
Consensus pattern (143 bp):
TTTGCGCCTAGTGCTAGTTGGATAAACCGACAAATGTGTGCCCAACACTAGCCAGATAAACTGAC
GAAAGTTGCGCCCAGCGCTAACCGAATAAACTGACGAATAATTAGTGAGCCCAGCTCTAATTGGA
TAAACCAACGATA
Found at i:10578551 original size:54 final size:54
Alignment explanation
Indices: 10578433--10578551 Score: 150
Period size: 54 Copynumber: 2.2 Consensus size: 54
10578423 ACTTTCGAAG
* * *
10578433 TTGGGACACACGGTCGTGTCTCAGTCCGTGTCCTTACCCGTGTAAGTCACTGAC
1 TTGGGACACACGGTCATGTCTCAGACCGTGTCCTTACCCGTGTAACTCACTGAC
* * * *
10578487 TTGAGACACACGGTCATGTCTCA-ACCTGTGTCTTTGCCCGTGTAACTCCCTGAC
1 TTGGGACACACGGTCATGTCTCAGACC-GTGTCCTTACCCGTGTAACTCACTGAC
*
10578541 TTGGGTCACAC
1 TTGGGACACAC
10578552 AGCCGTGTGT
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
53 2 0.04
54 53 0.96
ACGTcount: A:0.18, C:0.30, G:0.24, T:0.29
Consensus pattern (54 bp):
TTGGGACACACGGTCATGTCTCAGACCGTGTCCTTACCCGTGTAACTCACTGAC
Found at i:10578790 original size:11 final size:11
Alignment explanation
Indices: 10578774--10578798 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
10578764 AACATACTTA
10578774 ATTGGTACCAC
1 ATTGGTACCAC
10578785 ATTGGTACCAC
1 ATTGGTACCAC
10578796 ATT
1 ATT
10578799 TTATAAGTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (11 bp):
ATTGGTACCAC
Found at i:10582402 original size:27 final size:27
Alignment explanation
Indices: 10582306--10582402 Score: 106
Period size: 27 Copynumber: 3.6 Consensus size: 27
10582296 ATACAATTGA
**
10582306 AGGGTAAAATGACT-ATTTTACCCCTAAT
1 AGGGTAAAATGACTGA-AATACCCCT-AT
*
10582334 AGGGTAAAATGACCGAAATACCCCTAT
1 AGGGTAAAATGACTGAAATACCCCTAT
* * *
10582361 AGGATAAAATTACTGAAATATCCCTAT
1 AGGGTAAAATGACTGAAATACCCCTAT
*
10582388 AGGGTAAAACGACTG
1 AGGGTAAAATGACTG
10582403 TTATACCTCT
Statistics
Matches: 58, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
27 37 0.64
28 20 0.34
29 1 0.02
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.25
Consensus pattern (27 bp):
AGGGTAAAATGACTGAAATACCCCTAT
Found at i:10582708 original size:109 final size:109
Alignment explanation
Indices: 10582517--10582738 Score: 381
Period size: 109 Copynumber: 2.0 Consensus size: 109
10582507 TGTCACGACA
*
10582517 TGTTGCATGGGGTTGGGTTGTTATATTTGGAGGAAATGTACTGTACTGTTAAGGTCGCACGGGTC
1 TGTTGCATGGGGTTGGGTTGTTATATTTGGAGGAAATGTACTGTACTGTTAAGGTCGCACAGGTC
* *
10582582 GCCCAAGGCGACTGTGGACCTACTAGTGGCTTTGCTACATATAC
66 GCCCAAGACGACTGTGGACCTACTAGTGGCTTTGCCACATATAC
* *
10582626 TGTTGCATGGGGTTGGGTTGTTCTATTTGGAGGAAGTGTACTGTACTGTTAAGGTCGCACAGGTC
1 TGTTGCATGGGGTTGGGTTGTTATATTTGGAGGAAATGTACTGTACTGTTAAGGTCGCACAGGTC
* *
10582691 GCGCAAGACGACTGTGGACCTACTGGTGGCTTTGCCACATATAC
66 GCCCAAGACGACTGTGGACCTACTAGTGGCTTTGCCACATATAC
10582735 TGTT
1 TGTT
10582739 ACTGGCAGCT
Statistics
Matches: 106, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
109 106 1.00
ACGTcount: A:0.19, C:0.18, G:0.32, T:0.32
Consensus pattern (109 bp):
TGTTGCATGGGGTTGGGTTGTTATATTTGGAGGAAATGTACTGTACTGTTAAGGTCGCACAGGTC
GCCCAAGACGACTGTGGACCTACTAGTGGCTTTGCCACATATAC
Found at i:10582767 original size:26 final size:26
Alignment explanation
Indices: 10582731--10582782 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
10582721 TTTGCCACAT
* *
10582731 ATACTGTTACTGGCAGCTTTGTTGCG
1 ATACTATTACTGGCAGCTTTGCTGCG
10582757 ATACTATTACTGGCAGCTTTGCTGCG
1 ATACTATTACTGGCAGCTTTGCTGCG
10582783 TATTGGTGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.17, C:0.21, G:0.25, T:0.37
Consensus pattern (26 bp):
ATACTATTACTGGCAGCTTTGCTGCG
Found at i:10582929 original size:28 final size:28
Alignment explanation
Indices: 10582889--10583008 Score: 190
Period size: 28 Copynumber: 4.3 Consensus size: 28
10582879 TGCACTGCAT
10582889 TGTTACTGTATTGGGCTAAGGCCCACAC
1 TGTTACTGTATTGGGCTAAGGCCCACAC
* *
10582917 TGTTACTATATTGGGTTAAGGCCCACAC
1 TGTTACTGTATTGGGCTAAGGCCCACAC
10582945 TGATT-CTGTATTGGGCTAAGGCCCACAC
1 TG-TTACTGTATTGGGCTAAGGCCCACAC
*
10582973 TTTTACTGTATTGGGCTAAGGCCCACAC
1 TGTTACTGTATTGGGCTAAGGCCCACAC
10583001 TG-TACTGT
1 TGTTACTGT
10583009 CACTAAATAG
Statistics
Matches: 84, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
27 8 0.10
28 74 0.88
29 2 0.02
ACGTcount: A:0.22, C:0.23, G:0.23, T:0.32
Consensus pattern (28 bp):
TGTTACTGTATTGGGCTAAGGCCCACAC
Found at i:10584935 original size:27 final size:27
Alignment explanation
Indices: 10584906--10585205 Score: 327
Period size: 27 Copynumber: 11.2 Consensus size: 27
10584896 AAATAGATAA
* *
10584906 AATGACTGAAATACCCCCATAAGGTTA-
1 AATGACCGAAATACCCCCAT-AGGGTAG
*
10584933 AATGATCGAAATACCCCCATAGGGTAG
1 AATGACCGAAATACCCCCATAGGGTAG
* *
10584960 AATGATCGAAATA-CCTCATAGGGTAG
1 AATGACCGAAATACCCCCATAGGGTAG
* *
10584986 AATGACCAAAATACCCCCACAGGGTAG
1 AATGACCGAAATACCCCCATAGGGTAG
* *
10585013 AATGACCAAAATACCCCTATAGGGTAG
1 AATGACCGAAATACCCCCATAGGGTAG
* * *
10585040 AATGACTGAAATACCCTCATAGAGTAG
1 AATGACCGAAATACCCCCATAGGGTAG
* *
10585067 AATGACCAAAATACCCCAATAGGGTAG
1 AATGACCGAAATACCCCCATAGGGTAG
* * * *
10585094 AATGAACG-AATATCCCTATAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAG
10585120 AATGACCGAAATACCCCCATAGGGTAG
1 AATGACCGAAATACCCCCATAGGGTAG
* * ** *
10585147 AATGACTGAAATACCCCTATAAAGTAA
1 AATGACCGAAATACCCCCATAGGGTAG
** * *
10585174 AATGACCGAAATACTTCCATAGGATAA
1 AATGACCGAAATACCCCCATAGGGTAG
10585201 AATGA
1 AATGA
10585206 TTGTTATACT
Statistics
Matches: 229, Mismatches: 41, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
26 50 0.22
27 179 0.78
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.19
Consensus pattern (27 bp):
AATGACCGAAATACCCCCATAGGGTAG
Found at i:10585025 original size:80 final size:79
Alignment explanation
Indices: 10584914--10585163 Score: 308
Period size: 80 Copynumber: 3.1 Consensus size: 79
10584904 AAAATGACTG
* * *
10584914 AAATACCCCCATAAGGTTA-AATGATCGAAATACCCCCATAGGGTAGAATGATCGAAATA-CCTC
1 AAATACCCCCA-AAGGGTAGAATGAAC-AAATACCCCTATAGGGTAGAATGA-CGAAATACCCTC
10584977 ATAGGGTAGAATGACCA
63 ATAGGGTAGAATGACCA
* *
10584994 AAATACCCCCACAGGGTAGAATGACCAAAATACCCCTATAGGGTAGAATGACTGAAATACCCTCA
1 AAATACCCCCAAAGGGTAGAATGAAC-AAATACCCCTATAGGGTAGAATGAC-GAAATACCCTCA
*
10585059 TAGAGTAGAATGACCA
64 TAGGGTAGAATGACCA
* * * *
10585075 AAATA-CCCCAATAGGGTAGAATGAACGAATATCCCTATAGGGTAAAATGACCGAAATACCCCCA
1 AAATACCCCCAA-AGGGTAGAATGAACAAATACCCCTATAGGGTAGAATGA-CGAAATACCCTCA
**
10585139 TAGGGTAGAATGACTG
64 TAGGGTAGAATGACCA
10585155 AAATACCCC
1 AAATACCCC
10585164 TATAAAGTAA
Statistics
Matches: 149, Mismatches: 15, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
79 6 0.04
80 101 0.68
81 42 0.28
ACGTcount: A:0.40, C:0.22, G:0.19, T:0.18
Consensus pattern (79 bp):
AAATACCCCCAAAGGGTAGAATGAACAAATACCCCTATAGGGTAGAATGACGAAATACCCTCATA
GGGTAGAATGACCA
Found at i:10585117 original size:107 final size:106
Alignment explanation
Indices: 10584903--10585205 Score: 342
Period size: 107 Copynumber: 2.8 Consensus size: 106
10584893 TCAAAATAGA
** * * *
10584903 TAAAATGACTGAAATACCCCCATAAGGTTA-AATGA-TCGAAATACCCCCATAGGGTAGAATGAT
1 TAAAATGACCAAAATACCCCCAT-AGGGTAGAATGACT-GAAATA-CCCCATAGAGTAGAATGAC
* *
10584966 CGAAATACCTCATAGGGTAGAATGACCAAAATACCCCCACAGGG
63 CGAAATACCCCATAGGGTAGAATGAACAAAATACCCCCACAGGG
* * *
10585010 TAGAATGACCAAAATACCCCTATAGGGTAGAATGACTGAAATACCCTCATAGAGTAGAATGACCA
1 TAAAATGACCAAAATACCCCCATAGGGTAGAATGACTGAAATACCC-CATAGAGTAGAATGACCG
* * * *
10585075 AAATACCCCAATAGGGTAGAATGAAC-GAATATCCCTATAGGG
65 AAATACCCC-ATAGGGTAGAATGAACAAAATACCCCCACAGGG
* * *
10585117 TAAAATGACCGAAATACCCCCATAGGGTAGAATGACTGAAATACCCCTATAAAGTAAAATGACCG
1 TAAAATGACCAAAATACCCCCATAGGGTAGAATGACTGAAATACCCC-ATAGAGTAGAATGACCG
* * *
10585182 AAATACTTCCATAGGATAAAATGA
65 AAATAC-CCCATAGGGTAGAATGA
10585206 TTGTTATACT
Statistics
Matches: 167, Mismatches: 23, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
106 9 0.05
107 140 0.84
108 18 0.11
ACGTcount: A:0.42, C:0.20, G:0.18, T:0.19
Consensus pattern (106 bp):
TAAAATGACCAAAATACCCCCATAGGGTAGAATGACTGAAATACCCCATAGAGTAGAATGACCGA
AATACCCCATAGGGTAGAATGAACAAAATACCCCCACAGGG
Found at i:10585205 original size:134 final size:133
Alignment explanation
Indices: 10584903--10585205 Score: 378
Period size: 134 Copynumber: 2.3 Consensus size: 133
10584893 TCAAAATAGA
* * * * *
10584903 TAAAATGACTGAAATACCCCCATAAGG-TTAAATGATCGAAATACCCCCATAGGGTAGAATGATC
1 TAAAATGACTGAAATA-CCCCAT-AGGATAAAATGACCAAAATACCCCAATAGGGTAGAATGAAC
*
10584967 GAAATACCTCATAGGGTAGAATGACCAAAATACCCCCACAGGGTAGAATGACCAAAATACCCCTA
64 GAAATACCTCATAGGGTAAAATGACCAAAATACCCCCACAGGGTAGAATGACCAAAATACCCCTA
**
10585032 TAGGG
129 TAAAG
* *
10585037 TAGAATGACTGAAATACCCTCATA-GAGTAGAATGACCAAAATACCCCAATAGGGTAGAATGAAC
1 TAAAATGACTGAAATACCC-CATAGGA-TAAAATGACCAAAATACCCCAATAGGGTAGAATGAAC
* * * **
10585101 GAATATCCCT-ATAGGGTAAAATGACCGAAATACCCCCATAGGGTAGAATGACTGAAATACCCCT
64 GAA-ATACCTCATAGGGTAAAATGACCAAAATACCCCCACAGGGTAGAATGACCAAAATACCCCT
10585165 ATAAAG
128 ATAAAG
* *
10585171 TAAAATGACCGAAATACTTCCATAGGATAAAATGA
1 TAAAATGACTGAAATAC-CCCATAGGATAAAATGA
10585206 TTGTTATACT
Statistics
Matches: 144, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
132 1 0.01
133 4 0.03
134 131 0.91
135 8 0.06
ACGTcount: A:0.42, C:0.20, G:0.18, T:0.19
Consensus pattern (133 bp):
TAAAATGACTGAAATACCCCATAGGATAAAATGACCAAAATACCCCAATAGGGTAGAATGAACGA
AATACCTCATAGGGTAAAATGACCAAAATACCCCCACAGGGTAGAATGACCAAAATACCCCTATA
AAG
Found at i:10589284 original size:62 final size:62
Alignment explanation
Indices: 10589154--10589290 Score: 168
Period size: 62 Copynumber: 2.2 Consensus size: 62
10589144 ATGGGCAACA
* * *** *
10589154 GACAC-GGATGTGTGTCTAGGCCGTGTAACTCACTGTTTCTGGTATAAGACCACATGGCCAGG
1 GACACGGGA-GTGTGTCTAGGCCGCGTAACTCACTGTTTCTGGTATAAAACCACACAACCAAG
* * *
10589216 GTCACGGGAGTGTGTCTTGGCCGCGTAACTCACTGTTTGTGGTATAAAACCACACAACCAAG
1 GACACGGGAGTGTGTCTAGGCCGCGTAACTCACTGTTTCTGGTATAAAACCACACAACCAAG
*
10589278 GACACGGGTGTGT
1 GACACGGGAGTGT
10589291 ACCCAAGTCG
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
62 60 0.95
63 3 0.05
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (62 bp):
GACACGGGAGTGTGTCTAGGCCGCGTAACTCACTGTTTCTGGTATAAAACCACACAACCAAG
Found at i:10590510 original size:28 final size:28
Alignment explanation
Indices: 10590479--10590556 Score: 102
Period size: 28 Copynumber: 2.8 Consensus size: 28
10590469 AATTTTGAGT
* * *
10590479 CAAAACCATAAAATCTAAAAAACAGTGG
1 CAAAACTATAAAATATAAAAAACAATGG
* * *
10590507 CAAAACTATGAAATTTAATAAACAATGG
1 CAAAACTATAAAATATAAAAAACAATGG
10590535 CAAAACTATAAAATATAAAAAA
1 CAAAACTATAAAATATAAAAAA
10590557 TAGGGGACAC
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.60, C:0.13, G:0.08, T:0.19
Consensus pattern (28 bp):
CAAAACTATAAAATATAAAAAACAATGG
Found at i:10592007 original size:29 final size:30
Alignment explanation
Indices: 10591947--10592014 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 30
10591937 ATTTTTTTAA
* *
10591947 ATTTTAAAAAATCAAAAATTTATGAAAATT
1 ATTTTAAAAAATCAAAAAATCATGAAAATT
* * *
10591977 ATTTTTAAAAAT-AAAAAATCATTAAAGTT
1 ATTTTAAAAAATCAAAAAATCATGAAAATT
10592006 A-TTTAAAAA
1 ATTTTAAAAA
10592015 TGATAAAAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
28 7 0.22
29 14 0.44
30 11 0.34
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.37
Consensus pattern (30 bp):
ATTTTAAAAAATCAAAAAATCATGAAAATT
Found at i:10592013 original size:20 final size:20
Alignment explanation
Indices: 10591990--10592035 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
10591980 TTTAAAAATA
* **
10591990 AAAAATCATTAAAGTTATTT
1 AAAAATCATAAAAAATATTT
*
10592010 AAAAATGATAAAAAATATTT
1 AAAAATCATAAAAAATATTT
10592030 AAAAAT
1 AAAAAT
10592036 TTTAAAAATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (20 bp):
AAAAATCATAAAAAATATTT
Found at i:10592051 original size:20 final size:20
Alignment explanation
Indices: 10592008--10592052 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
10591998 TTAAAGTTAT
*
10592008 TTAAAAATGATAAAAAATAT
1 TTAAAAATGATAAAAAATAA
** *
10592028 TTAAAAATTTTAAAAATTAA
1 TTAAAAATGATAAAAAATAA
10592048 TTAAA
1 TTAAA
10592053 TGCTGACATG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (20 bp):
TTAAAAATGATAAAAAATAA
Found at i:10597050 original size:25 final size:25
Alignment explanation
Indices: 10597013--10597075 Score: 99
Period size: 25 Copynumber: 2.5 Consensus size: 25
10597003 TTTTGTACAT
10597013 GTATGCTCACACGAGCTATAAATCG
1 GTATGCTCACACGAGCTATAAATCG
* *
10597038 GTATGCTCTCACGAGCTGTAAATCG
1 GTATGCTCACACGAGCTATAAATCG
*
10597063 GTATGCTTACACG
1 GTATGCTCACACG
10597076 TGTTGTGGGT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (25 bp):
GTATGCTCACACGAGCTATAAATCG
Found at i:10601384 original size:5 final size:5
Alignment explanation
Indices: 10601374--10601419 Score: 83
Period size: 5 Copynumber: 9.2 Consensus size: 5
10601364 TTTTTATGCT
*
10601374 TTATA TTATA TTATA TTATA TTATA TTATA TTGTA TTATA TTATA T
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA T
10601420 AAGTAAAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 39 1.00
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (5 bp):
TTATA
Found at i:10608792 original size:5 final size:5
Alignment explanation
Indices: 10608777--10608821 Score: 74
Period size: 5 Copynumber: 9.2 Consensus size: 5
10608767 TTTTTATGCT
*
10608777 TTATA -TATA TTATA TTATA TTATA TTATA TTGTA TTATA TTATA T
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA T
10608822 AAGTAAAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
4 4 0.11
5 33 0.89
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (5 bp):
TTATA
Found at i:10609638 original size:3 final size:3
Alignment explanation
Indices: 10609630--10609675 Score: 56
Period size: 3 Copynumber: 15.3 Consensus size: 3
10609620 TGAATAAAAA
* * * *
10609630 TAT TAT TAT TAT TAT TAT TGT TAA TAT AAT TAT AAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
10609676 TTAATGATTA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:10612770 original size:300 final size:299
Alignment explanation
Indices: 10612223--10612806 Score: 893
Period size: 300 Copynumber: 1.9 Consensus size: 299
10612213 GGGATCAGTG
* * *
10612223 AAATGGATAGACAAGAATTTAATTAGGCTTCATGGTCAAGTGTTAAAGAATCCTCCCTAGAGACC
1 AAATAGATAGACAAGAATTGAATTAGGCTTCATGGTAAAGTGTTAAAGAATCCTCCCTAGAGACC
* *
10612288 CAAGTTTGAGCTCCCTTCCTCCCATTTCCTTCCTTTTATTTTCGATAACCTAGGGTAAAAGCCAC
66 CAAGTTTGAGCTCCCTTCCTCCCATTTCCTTCCTTTTATTTTCGACAACCTAGGGTAAAAGCAAC
* * *
10612353 ACCTAAAACATATACAGTAAGGAATTAAAATTGAACAAGAAATAGGCTTCAGGCCTAATGGTTAA
131 ACCTAAAACATATAAAGCAAGGAATTAAAACTGAACAAGAAATAGGCTTCAGGCCTAATGGTTAA
* * * * *
10612418 GAGTTAGCTTCCCTTCCTTGTGACCCTCGGTTTGAACCACTCCTTCCCCAAAAGTATTCCTTTCA
196 GAGTTAGCTTCCATCCCTTGTGACCCTCGGTTCGAACCACTCATTCCCCAAAAATA-TCCTTTCA
10612483 TTTTCAGCCAAATTTTGGGATATTTGTCGTTGACACCCTA
260 TTTTCAGCCAAATTTTGGGATATTTGTCGTTGACACCCTA
* *
10612523 AAATAGATAGACAAGAATTGAATTAGGCTTCATGGTAAAGTGTTAGAGAATCCTCCTTAGAGACC
1 AAATAGATAGACAAGAATTGAATTAGGCTTCATGGTAAAGTGTTAAAGAATCCTCCCTAGAGACC
* * *
10612588 CAAGTTTGAGCTCCTTTCCTCCCATTTCCTTCCTTTTATTTTTGGCAACCTAGGGTAAAAGCAAC
66 CAAGTTTGAGCTCCCTTCCTCCCATTTCCTTCCTTTTATTTTCGACAACCTAGGGTAAAAGCAAC
* * *
10612653 ACTTAAAATATATAAAGCCAA-GAATTAAAACTGAACAAGAAAT-GGACTTTAGGCCTAATGGTT
131 ACCTAAAACATATAAAG-CAAGGAATTAAAACTGAACAAGAAATAGG-CTTCAGGCCTAATGGTT
* * *
10612716 AAGAGTTAGCTTCCATCCCTTGTGACCCTCGGTTCGAGCCACTCATTCCCCAAAAATATCTTTTT
194 AAGAGTTAGCTTCCATCCCTTGTGACCCTCGGTTCGAACCACTCATTCCCCAAAAATATCCTTTC
* *
10612781 ATTTTCGGTCAAATTTTGGGATATTT
259 ATTTTCAGCCAAATTTTGGGATATTT
10612807 ACTGTTGTCG
Statistics
Matches: 256, Mismatches: 26, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
299 31 0.12
300 223 0.87
301 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (299 bp):
AAATAGATAGACAAGAATTGAATTAGGCTTCATGGTAAAGTGTTAAAGAATCCTCCCTAGAGACC
CAAGTTTGAGCTCCCTTCCTCCCATTTCCTTCCTTTTATTTTCGACAACCTAGGGTAAAAGCAAC
ACCTAAAACATATAAAGCAAGGAATTAAAACTGAACAAGAAATAGGCTTCAGGCCTAATGGTTAA
GAGTTAGCTTCCATCCCTTGTGACCCTCGGTTCGAACCACTCATTCCCCAAAAATATCCTTTCAT
TTTCAGCCAAATTTTGGGATATTTGTCGTTGACACCCTA
Found at i:10615444 original size:15 final size:16
Alignment explanation
Indices: 10615426--10615459 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
10615416 ATTATCTTGA
*
10615426 TTTAAA-TTATTATCT
1 TTTAAATTTAATATCT
10615441 TTTAAATTTAATATCT
1 TTTAAATTTAATATCT
10615457 TTT
1 TTT
10615460 CAGAATTACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTAAATTTAATATCT
Found at i:10617331 original size:3 final size:3
Alignment explanation
Indices: 10617325--10617354 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
10617315 CTGATTGTTG
10617325 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
10617355 GGTAAAGTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:10620010 original size:27 final size:26
Alignment explanation
Indices: 10619949--10620015 Score: 91
Period size: 27 Copynumber: 2.6 Consensus size: 26
10619939 GGTTTGAGAG
10619949 AAAGT-AAAAGTTTTGGGAAAAAACA
1 AAAGTAAAAAGTTTTGGGAAAAAACA
* * *
10619974 AAAGGAAAAAGTTTTGGGAGGAAAGCA
1 AAAGTAAAAAGTTTTGGGA-AAAAACA
10620001 AAAGTAAAAAGTTTT
1 AAAGTAAAAAGTTTT
10620016 AAGGGTTTGG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
25 4 0.11
26 13 0.36
27 19 0.53
ACGTcount: A:0.52, C:0.03, G:0.24, T:0.21
Consensus pattern (26 bp):
AAAGTAAAAAGTTTTGGGAAAAAACA
Found at i:10630484 original size:34 final size:34
Alignment explanation
Indices: 10630445--10630584 Score: 84
Period size: 37 Copynumber: 4.2 Consensus size: 34
10630435 AATTTTATCA
10630445 AATTATATATTTTTATTAAATTATATTTAATAAT
1 AATTATATATTTTTATTAAATTATATTTAATAAT
* *
10630479 -A--AT-TA---TT-TTAAATTAT-TTTTATAGT
1 AATTATATATTTTTATTAAATTATATTTAATAAT
* ** *
10630504 -ATTATGTATTATGATTTTAGTAAATTCATATATTTTTATT
1 AATTA--TA-TAT--TTTTATTAAATT-ATAT-TTAATAAT
10630544 AAATTATATATTTTTATTAAATTATATTTAATAAT
1 -AATTATATATTTTTATTAAATTATATTTAATAAT
10630579 AATTAT
1 AATTAT
10630585 GTTAAAATAT
Statistics
Matches: 80, Mismatches: 9, Indels: 34
0.65 0.07 0.28
Matches are distributed among these distances:
25 8 0.10
26 9 0.11
27 3 0.04
29 1 0.01
30 2 0.03
31 4 0.05
33 1 0.01
34 6 0.08
35 5 0.06
36 6 0.08
37 17 0.21
38 2 0.03
39 4 0.05
40 8 0.10
42 4 0.05
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (34 bp):
AATTATATATTTTTATTAAATTATATTTAATAAT
Found at i:10630572 original size:16 final size:18
Alignment explanation
Indices: 10630518--10630570 Score: 88
Period size: 18 Copynumber: 2.9 Consensus size: 18
10630508 TGTATTATGA
*
10630518 TTTTAGTAAATTCATATAT
1 TTTTATTAAATT-ATATAT
10630537 TTTTATTAAATTATATAT
1 TTTTATTAAATTATATAT
10630555 TTTTATTAAATTATAT
1 TTTTATTAAATTATAT
10630571 TTAATAATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
18 22 0.67
19 11 0.33
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (18 bp):
TTTTATTAAATTATATAT
Found at i:10630797 original size:44 final size:46
Alignment explanation
Indices: 10630730--10630822 Score: 136
Period size: 44 Copynumber: 2.1 Consensus size: 46
10630720 TTACACCTTT
*
10630730 ATTCCATTAAACCAAACACAAGAA-TACC-ATTACGCCTCTATTCC
1 ATTCCATTAAACCAAACAAAAGAATTACCTATTACGCCTCTATTCC
* * *
10630774 ATTCCTTTCAACCAAACAAAAGAATTACCTATTACGTCTCTATTCC
1 ATTCCATTAAACCAAACAAAAGAATTACCTATTACGCCTCTATTCC
10630820 ATT
1 ATT
10630823 ACACATCTAT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 21 0.49
45 4 0.09
46 18 0.42
ACGTcount: A:0.37, C:0.29, G:0.04, T:0.30
Consensus pattern (46 bp):
ATTCCATTAAACCAAACAAAAGAATTACCTATTACGCCTCTATTCC
Found at i:10632090 original size:51 final size:51
Alignment explanation
Indices: 10632025--10632540 Score: 552
Period size: 51 Copynumber: 10.5 Consensus size: 51
10632015 GGGAGGAGGT
* *
10632025 GGTGGTGGAGACTTGTACTTGTAAGGGTACTTGGGTGGTGATGGCGGTGGA
1 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGA
* * *
10632076 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGGGATGGAGGTGGT
1 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGA
* * * * *
10632127 GGTGGCGGAGACTTGTACTTGTAAGGATGCTTTGGAGGTGATGGTGGTGGT
1 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGA
* * * *
10632178 GGTGGTGGAGACCTGTACTTATAAGGATGCTTTGGTGGTGATGGTGGTGGA
1 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGA
*
10632229 GGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGA
1 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGA
10632280 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGA
1 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGA
* *
10632331 GGTGGTGGAGACTTATACTTGTAA----AC-TGGAGATGGTG--GG-GGTGGA
1 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGG-G-TGGTGATGGTGGTGGA
* * *** ** ** * * *
10632376 GACT--T-G-TACTTGTAAGGGT--GCTTGGGT-GGTGATGGTGGTGGTGGT
1 G-GTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGA
*
10632421 ----G-GG-GACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGA
1 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGA
* * *
10632466 GGTGGAGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGAGGA
1 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGA
*
10632517 GGTGGTGGAGACTTATACTTGTAA
1 GGTGGTGGAGACTTGTACTTGTAA
10632541 ACAGGAGTTG
Statistics
Matches: 396, Mismatches: 47, Indels: 44
0.81 0.10 0.09
Matches are distributed among these distances:
42 22 0.06
43 2 0.01
44 8 0.02
45 28 0.07
46 6 0.02
47 2 0.01
48 5 0.01
49 1 0.00
50 2 0.01
51 320 0.81
ACGTcount: A:0.16, C:0.07, G:0.47, T:0.31
Consensus pattern (51 bp):
GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGA
Found at i:10632243 original size:153 final size:152
Alignment explanation
Indices: 10632025--10632540 Score: 724
Period size: 153 Copynumber: 3.5 Consensus size: 152
10632015 GGGAGGAGGT
* * *
10632025 GGTGGTGGAGACTTGTACTTGTAAGGGTACTTGGGTGGTGATGGCGGTGGAGGTGGTGGAGACTT
1 GGTGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGAGACTT
* *
10632090 GTACTTGTAAGGGTGCTTGGGTGGGGATGGAGGTGGTGGTGGCGGAGACTTGTACTTGTAAGGAT
66 GTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGTGGTGG-GGAGACTTGTACTTGTAAGGAT
* * *
10632155 GCTTTGGAGGTGATGGTGGTGGT
130 GCTTGGGTGGTGATGGTGGTGGA
* * * *
10632178 GGTGGTGGAGACCTGTACTTATAAGGATGCTTTGGTGGTGATGGTGGTGGAGGTGGTGGGGACTT
1 GGTGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGAGACTT
* *
10632243 GTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGAGACTTGTACTTGTAAGGGT
66 GTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGTGGTGG-GGAGACTTGTACTTGTAAGGAT
10632308 GCTTGGGTGGTGATGGTGGTGGA
130 GCTTGGGTGGTGATGGTGGTGGA
* *
10632331 GGTGGTGGAGACTTATACTTGTAA--A--C-----T-G-GA-GATGGT-G-GG-GGTGGAGACTT
1 GGTGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGAGACTT
10632381 GTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGTGGT-GGG-GACTTGTACTTGTAAGGATG
66 GTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGTGGTGGGGAGACTTGTACTTGTAAGGATG
10632444 CTTGGGTGGTGATGGTGGTGGA
131 CTTGGGTGGTGATGGTGGTGGA
* *
10632466 GGTGGAGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGAGGAGGTGGTGGAGACTT
1 GGTGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGAGACTT
*
10632531 ATACTTGTAA
66 GTACTTGTAA
10632541 ACAGGAGTTG
Statistics
Matches: 321, Mismatches: 27, Indels: 33
0.84 0.07 0.09
Matches are distributed among these distances:
135 63 0.20
136 2 0.01
137 2 0.01
138 49 0.15
139 3 0.01
140 1 0.00
141 5 0.02
142 2 0.01
143 1 0.00
144 2 0.01
145 1 0.00
146 2 0.01
147 4 0.01
148 1 0.00
149 3 0.01
150 20 0.06
151 1 0.00
153 159 0.50
ACGTcount: A:0.16, C:0.07, G:0.47, T:0.31
Consensus pattern (152 bp):
GGTGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGAGACTT
GTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGTGGTGGGGAGACTTGTACTTGTAAGGATG
CTTGGGTGGTGATGGTGGTGGA
Found at i:10632399 original size:87 final size:87
Alignment explanation
Indices: 10632283--10632599 Score: 361
Period size: 87 Copynumber: 3.5 Consensus size: 87
10632273 TGGTGGAGGT
10632283 GGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGAGACTTATA
1 GGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGAGACTTATA
10632348 CTTGTAAACTGGAGATGGTGGG
66 CTTGTAAACTGGAGATGGTGGG
* *
10632370 GGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGT---GGTGGTGGGGACTTGTA
1 GGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGAGACTTATA
*
10632432 CTTGTAAGGATGCTTGGGTGGTGATGGTGGTGG
66 CTTGTAA--A--C-----TGGAGATGGT-G-GG
* *
10632465 AGGTGGAGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGAGGAGGTGGTGGAGACT
1 -GGT---GGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGAGACT
* *
10632530 TATACTTGTAAACAGGAGTTGGTGGG
62 TATACTTGTAAACTGGAGATGGTGGG
* * * * * *
10632556 GGAGGAGATTTGTACTTGTAAGGCTTCTTGTGTGGTGGTGGTGG
1 GGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGG
10632600 AGACTTGTAA
Statistics
Matches: 196, Mismatches: 16, Indels: 36
0.79 0.06 0.15
Matches are distributed among these distances:
84 22 0.11
86 1 0.01
87 81 0.41
88 1 0.01
90 2 0.01
91 2 0.01
92 1 0.01
93 16 0.08
94 1 0.01
95 2 0.01
96 3 0.02
98 1 0.01
99 40 0.20
100 1 0.01
102 22 0.11
ACGTcount: A:0.17, C:0.07, G:0.45, T:0.31
Consensus pattern (87 bp):
GGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGAGACTTATA
CTTGTAAACTGGAGATGGTGGG
Found at i:10632448 original size:186 final size:186
Alignment explanation
Indices: 10632022--10632599 Score: 778
Period size: 186 Copynumber: 3.0 Consensus size: 186
10632012 AACGGGAGGA
* * *
10632022 GGTGGTGGTGGAGACTTGTACTTGTAAGGGTACTTGGGTGGTGATGGCGGTGGAGGTGGTGGAGA
1 GGTGGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGAGA
* * * * *
10632087 CTTGTACTTGTAAGGGTGCTTGGGTGGGGATGGAGGTGGTGGTGGCGGAGACTTGTACTTGTAAG
66 CTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGAGACTTATACTTGTAA-
* * *
10632152 GATGCTTTGGAGGTGATGGTGGTGGTGGTGGTGGAGACCTGTACTTATAAGGATGCTTTGGTGGT
130 -A--C--TGGA---GA---TGGT-G-GG-GGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGT
10632217 GATGGT
181 GATGGT
10632223 GGTGGAGGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGAGGTGGTGG
1 GGT---GGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGAGGTGGTGG
10632288 AGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGAGACTTATACTTGT
63 AGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGAGACTTATACTTGT
*
10632353 AAACTGGAGATGGTGGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGT
128 AAACTGGAGATGGTGGGGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGT
* *
10632412 GGTGGTGGTGGGGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGAGGAGA
1 GGTGGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGAGA
* *
10632477 CTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGAGGAGGTGGTGGAGACTTATACTTGTAAA
66 CTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGAGACTTATACTTGTAAA
* * * * * * * *
10632542 CAGGAGTTGGTGGGGGAGGAGATTTGTACTTGTAAGGCTTCTTGTGTGGTGGTGGT
131 CTGGAGATGGTGGGGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGT
10632598 GG
1 GG
10632600 AGACTTGTAA
Statistics
Matches: 350, Mismatches: 24, Indels: 21
0.89 0.06 0.05
Matches are distributed among these distances:
186 173 0.49
189 41 0.12
190 2 0.01
191 1 0.00
192 4 0.01
195 2 0.01
198 4 0.01
200 1 0.00
201 3 0.01
202 1 0.00
204 118 0.34
ACGTcount: A:0.16, C:0.07, G:0.47, T:0.31
Consensus pattern (186 bp):
GGTGGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGAGA
CTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGAGACTTATACTTGTAAA
CTGGAGATGGTGGGGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGT
Found at i:10632457 original size:135 final size:136
Alignment explanation
Indices: 10632232--10632489 Score: 446
Period size: 135 Copynumber: 1.9 Consensus size: 136
10632222 TGGTGGAGGT
*
10632232 GGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGAGACTTGTA
1 GGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGT-G-GGTGGTGGAGACTTGTA
* *
10632297 CTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGAGACTTATACTTGTAAACTGGAG
64 CTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGAGGAGACTTATACTTGTAAACTGGAG
10632362 ATGGTGGG
129 ATGGTGGG
*
10632370 GGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGT-GGTGGTGGGGACTTGTACT
1 GGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGGTGGTGGAGACTTGTACT
*
10632434 TGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGAGGAGACTTGTACTTGTAA
66 TGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGAGGAGACTTATACTTGTAA
10632490 GGATGCTTGG
Statistics
Matches: 115, Mismatches: 5, Indels: 3
0.93 0.04 0.02
Matches are distributed among these distances:
135 71 0.62
138 44 0.38
ACGTcount: A:0.16, C:0.07, G:0.47, T:0.31
Consensus pattern (136 bp):
GGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGGTGGTGGAGACTTGTACT
TGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGAGGAGACTTATACTTGTAAACTGGAGAT
GGTGGG
Found at i:10634049 original size:42 final size:44
Alignment explanation
Indices: 10633972--10634057 Score: 131
Period size: 42 Copynumber: 2.0 Consensus size: 44
10633962 TGAAAAAACA
* * *
10633972 TAATTCAAATATTTGTTAATAGTAAAAAATTATTGATAAATATT
1 TAATTCAAATATTTATTAATAATAAAAAATTATTGAAAAATATT
10634016 TAATTCAAA-ATTTATTAATAAT-AAAAATTATTGAAAAATATT
1 TAATTCAAATATTTATTAATAATAAAAAATTATTGAAAAATATT
10634058 AAATACGTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
42 19 0.49
43 11 0.28
44 9 0.23
ACGTcount: A:0.51, C:0.02, G:0.05, T:0.42
Consensus pattern (44 bp):
TAATTCAAATATTTATTAATAATAAAAAATTATTGAAAAATATT
Found at i:10635829 original size:13 final size:13
Alignment explanation
Indices: 10635811--10635835 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10635801 CAGTTAGCAG
10635811 CAGTTAGTCATAA
1 CAGTTAGTCATAA
10635824 CAGTTAGTCATA
1 CAGTTAGTCATA
10635836 CAAGTATAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
CAGTTAGTCATAA
Found at i:10640914 original size:13 final size:13
Alignment explanation
Indices: 10640896--10640922 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
10640886 ATTGTTAGTA
10640896 AGCAGTTAGTCAT
1 AGCAGTTAGTCAT
10640909 AGCAGTTAGTCAT
1 AGCAGTTAGTCAT
10640922 A
1 A
10640923 CAATTATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (13 bp):
AGCAGTTAGTCAT
Found at i:10641285 original size:75 final size:75
Alignment explanation
Indices: 10641156--10641294 Score: 179
Period size: 75 Copynumber: 1.9 Consensus size: 75
10641146 GCCAACTTGT
* * * *
10641156 TTGGCTTGATAGCATCCCCTTATAGAAAAGGCTCTACCGTATGGCATGAGAGCAATAAAAGTAAC
1 TTGGCTTGATAGCATCCCCTTAGAGAAAAGGCTCTACCATATGACATGAAAGCAATAAAAGTAAC
10641221 ACTCAATTTC
66 ACTCAATTTC
* * * * * * *
10641231 TTGGGTTGATAGCATCTCCTTAGGGAAAAGGGTTTACCATGTGACATGAAAGCAATTAAAGTAA
1 TTGGCTTGATAGCATCCCCTTAGAGAAAAGGCTCTACCATATGACATGAAAGCAATAAAAGTAA
10641295 GAGTAAGATC
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
75 53 1.00
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (75 bp):
TTGGCTTGATAGCATCCCCTTAGAGAAAAGGCTCTACCATATGACATGAAAGCAATAAAAGTAAC
ACTCAATTTC
Found at i:10641824 original size:3 final size:3
Alignment explanation
Indices: 10641816--10641846 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
10641806 TATATAAATT
10641816 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
10641847 CAAATATTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:10644533 original size:19 final size:19
Alignment explanation
Indices: 10644492--10644539 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
10644482 CCAAAAGACT
* * *
10644492 AAATATTTAATAACAAGAGA
1 AAATA-TTAAAAACAAAAAA
10644512 AAATATTAAAAACAAAAAA
1 AAATATTAAAAACAAAAAA
10644531 AAATTATTA
1 AAA-TATTA
10644540 CATCAGACTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.67, C:0.04, G:0.04, T:0.25
Consensus pattern (19 bp):
AAATATTAAAAACAAAAAA
Found at i:10647389 original size:50 final size:50
Alignment explanation
Indices: 10647239--10647480 Score: 371
Period size: 50 Copynumber: 4.8 Consensus size: 50
10647229 GATAATAACA
* ** *
10647239 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTACTCATGTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCT-CTCATCTCGG
** * *
10647290 TGTCC-ATTCCATATCCCAGACATGGTCTTAC-GGGGACCTCTCATCTCGG
1 TG-CCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
10647339 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
10647389 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
10647439 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
10647481 TTACCCAAAT
Statistics
Matches: 177, Mismatches: 11, Indels: 7
0.91 0.06 0.04
Matches are distributed among these distances:
48 2 0.01
49 35 0.20
50 113 0.64
51 25 0.14
52 2 0.01
ACGTcount: A:0.21, C:0.31, G:0.22, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:10647596 original size:13 final size:13
Alignment explanation
Indices: 10647575--10647604 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
10647565 GCTTGGATAA
10647575 TCATCAAATAAAT
1 TCATCAAATAAAT
*
10647588 TCATGAAATAAAT
1 TCATCAAATAAAT
10647601 TCAT
1 TCAT
10647605 AGTTGCTGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.13, G:0.03, T:0.33
Consensus pattern (13 bp):
TCATCAAATAAAT
Found at i:10653371 original size:41 final size:41
Alignment explanation
Indices: 10653197--10653358 Score: 218
Period size: 41 Copynumber: 4.0 Consensus size: 41
10653187 TTATAGTTTA
* * * * *
10653197 ATTCAGTTCACCGGCACTTAGCCTACTAGGCTTGTAG-CCTG
1 ATTCAATTCACCGGCACTTAGCCTGCTAGACGTATAGTCC-G
*
10653238 ATTCAGTTCACCGGCACTTAGCCTGCTAGACGTATAGTCCG
1 ATTCAATTCACCGGCACTTAGCCTGCTAGACGTATAGTCCG
* *
10653279 ATTCAATTCACCGGTATTTAGCCTGCTAGACGTATAGTCCG
1 ATTCAATTCACCGGCACTTAGCCTGCTAGACGTATAGTCCG
* *
10653320 ATTCCATTTACCGGCACTTAGCCTGCTAGACGTATAGTC
1 ATTCAATTCACCGGCACTTAGCCTGCTAGACGTATAGTC
10653359 TGAATAATTT
Statistics
Matches: 109, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
41 107 0.98
42 2 0.02
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (41 bp):
ATTCAATTCACCGGCACTTAGCCTGCTAGACGTATAGTCCG
Found at i:10654220 original size:11 final size:11
Alignment explanation
Indices: 10654197--10654225 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
10654187 CTTGTTGTTC
10654197 TCTTTTC-TTT
1 TCTTTTCTTTT
10654207 TCTTTTCTTTT
1 TCTTTTCTTTT
10654218 TCTTTTCT
1 TCTTTTCT
10654226 ATATTCGGCC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.39
11 11 0.61
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (11 bp):
TCTTTTCTTTT
Found at i:10654220 original size:16 final size:17
Alignment explanation
Indices: 10654194--10654225 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
10654184 AACCTTGTTG
10654194 TTCTCTTTTCTTTTCTT
1 TTCTCTTTTCTTTTCTT
10654211 TTCT-TTTTCTTTTCT
1 TTCTCTTTTCTTTTCT
10654226 ATATTCGGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (17 bp):
TTCTCTTTTCTTTTCTT
Found at i:10660540 original size:41 final size:41
Alignment explanation
Indices: 10660366--10660527 Score: 227
Period size: 41 Copynumber: 4.0 Consensus size: 41
10660356 TTATAGTTTA
* * * * *
10660366 ATTCAGTTCACCGGCACTTAGCCTACTAGGCTTGTAG-CCTG
1 ATTCAATTCACCGGCACTTAGCCTGCTAGACGTATAGTCC-G
*
10660407 ATTCAGTTCACCGGCACTTAGCCTGCTAGACGTATAGTCCG
1 ATTCAATTCACCGGCACTTAGCCTGCTAGACGTATAGTCCG
* *
10660448 ATTCAATTCACCGGTATTTAGCCTGCTAGACGTATAGTCCG
1 ATTCAATTCACCGGCACTTAGCCTGCTAGACGTATAGTCCG
*
10660489 ATTCAATTTACCGGCACTTAGCCTGCTAGACGTATAGTC
1 ATTCAATTCACCGGCACTTAGCCTGCTAGACGTATAGTC
10660528 TGAATAATTT
Statistics
Matches: 110, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
41 108 0.98
42 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (41 bp):
ATTCAATTCACCGGCACTTAGCCTGCTAGACGTATAGTCCG
Found at i:10661395 original size:11 final size:11
Alignment explanation
Indices: 10661372--10661400 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
10661362 CTTGTTGTTC
10661372 TCTTTTC-TTT
1 TCTTTTCTTTT
10661382 TCTTTTCTTTT
1 TCTTTTCTTTT
10661393 TCTTTTCT
1 TCTTTTCT
10661401 ATATTCGGCC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.39
11 11 0.61
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (11 bp):
TCTTTTCTTTT
Found at i:10661395 original size:16 final size:17
Alignment explanation
Indices: 10661369--10661400 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
10661359 AACCTTGTTG
10661369 TTCTCTTTTCTTTTCTT
1 TTCTCTTTTCTTTTCTT
10661386 TTCT-TTTTCTTTTCT
1 TTCTCTTTTCTTTTCT
10661401 ATATTCGGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (17 bp):
TTCTCTTTTCTTTTCTT
Found at i:10662681 original size:13 final size:13
Alignment explanation
Indices: 10662663--10662687 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10662653 TGCTAAAATG
10662663 CACACAAAATAAA
1 CACACAAAATAAA
10662676 CACACAAAATAA
1 CACACAAAATAA
10662688 TATTAATAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (13 bp):
CACACAAAATAAA
Found at i:10664676 original size:50 final size:50
Alignment explanation
Indices: 10664560--10664802 Score: 369
Period size: 50 Copynumber: 4.8 Consensus size: 50
10664550 GATAATAACA
* ** *
10664560 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTACTCATGTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCT-CTCATCTCGG
* ** **
10664611 TGCCCATTCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
10664661 TGCCAATGTCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
10664711 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATTTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
10664761 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
10664803 TTATCCAAAT
Statistics
Matches: 176, Mismatches: 16, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
50 143 0.81
51 33 0.19
ACGTcount: A:0.20, C:0.31, G:0.23, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:10664918 original size:13 final size:13
Alignment explanation
Indices: 10664897--10664926 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
10664887 GCTTGGATAA
10664897 TCATCAAATAAAT
1 TCATCAAATAAAT
*
10664910 TCATGAAATAAAT
1 TCATCAAATAAAT
10664923 TCAT
1 TCAT
10664927 AGTTGCTGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.13, G:0.03, T:0.33
Consensus pattern (13 bp):
TCATCAAATAAAT
Found at i:10665172 original size:29 final size:29
Alignment explanation
Indices: 10665140--10665195 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
10665130 CCTCGACTCT
10665140 AACTTTT-CAAAATTACGATTTTGCCCCTA
1 AACTTTTACAAAATTAC-ATTTTGCCCCTA
* *
10665169 AACTTTTACATAATTACATTTTTCCCC
1 AACTTTTACAAAATTACATTTTGCCCC
10665196 CAAGGCTCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 16 0.67
30 8 0.33
ACGTcount: A:0.30, C:0.25, G:0.04, T:0.41
Consensus pattern (29 bp):
AACTTTTACAAAATTACATTTTGCCCCTA
Found at i:10668865 original size:20 final size:20
Alignment explanation
Indices: 10668795--10668882 Score: 79
Period size: 20 Copynumber: 4.3 Consensus size: 20
10668785 GTATCAATGA
10668795 TGCATAACAGAGGCACCGAAG
1 TGCA-AACAGAGGCACCGAAG
* * *
10668816 TGCAGACAAATGCA-CGAATG
1 TGCAAACAGAGGCACCGAA-G
*
10668836 TGCAATCAGAGGCACCGAAG
1 TGCAAACAGAGGCACCGAAG
* * *
10668856 TGAAAACAGATGCACCAAAG
1 TGCAAACAGAGGCACCGAAG
*
10668876 TACAAAC
1 TGCAAAC
10668883 CCGTACGAGT
Statistics
Matches: 52, Mismatches: 13, Indels: 5
0.74 0.19 0.07
Matches are distributed among these distances:
19 4 0.08
20 40 0.77
21 8 0.15
ACGTcount: A:0.42, C:0.23, G:0.24, T:0.11
Consensus pattern (20 bp):
TGCAAACAGAGGCACCGAAG
Found at i:10670318 original size:23 final size:24
Alignment explanation
Indices: 10670294--10670344 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 24
10670284 TGAGAGAATA
10670294 ATTTTCTTTGTTTAGAAATACTAATC
1 ATTTTCTTTGTTTAGAAATACT-A-C
*
10670320 ATTTTCTTTGTTTAGTAATACTAC
1 ATTTTCTTTGTTTAGAAATACTAC
10670344 A
1 A
10670345 ACTAGAATGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 2 0.08
25 1 0.04
26 21 0.88
ACGTcount: A:0.29, C:0.12, G:0.08, T:0.51
Consensus pattern (24 bp):
ATTTTCTTTGTTTAGAAATACTAC
Found at i:10672244 original size:54 final size:54
Alignment explanation
Indices: 10672171--10672284 Score: 158
Period size: 54 Copynumber: 2.1 Consensus size: 54
10672161 CCAAAATAGG
* *
10672171 TAAAATGATCGAAATACCCCTAT-AGAGTAAAATGACCGAAATACCCCCAAAGGA
1 TAAAATGATCAAAATACCCCTATAAG-GTAAAACGACCGAAATACCCCCAAAGGA
* * **
10672225 TAAAATGATTAAAATACCCCTATAAGGTAAAACGATCGAAATACCCCCGTAGGA
1 TAAAATGATCAAAATACCCCTATAAGGTAAAACGACCGAAATACCCCCAAAGGA
10672279 TAAAAT
1 TAAAAT
10672285 AACTATTATA
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 51 0.96
55 2 0.04
ACGTcount: A:0.46, C:0.20, G:0.14, T:0.19
Consensus pattern (54 bp):
TAAAATGATCAAAATACCCCTATAAGGTAAAACGACCGAAATACCCCCAAAGGA
Found at i:10672282 original size:27 final size:27
Alignment explanation
Indices: 10672166--10672284 Score: 127
Period size: 27 Copynumber: 4.4 Consensus size: 27
10672156 AAGACCCAAA
*
10672166 ATAGG-TAAAATGATCGAAATACCCCT
1 ATAGGATAAAATGATCGAAATACCCCC
*
10672192 ATA-GAGTAAAATGACCGAAATACCCCC
1 ATAGGA-TAAAATGATCGAAATACCCCC
* ** *
10672219 AAAGGATAAAATGATTAAAATACCCCT
1 ATAGGATAAAATGATCGAAATACCCCC
*
10672246 ATAAGG-TAAAACGATCGAAATACCCCC
1 AT-AGGATAAAATGATCGAAATACCCCC
*
10672273 GTAGGATAAAAT
1 ATAGGATAAAAT
10672285 AACTATTATA
Statistics
Matches: 74, Mismatches: 14, Indels: 9
0.76 0.14 0.09
Matches are distributed among these distances:
25 1 0.01
26 6 0.08
27 62 0.84
28 5 0.07
ACGTcount: A:0.46, C:0.19, G:0.15, T:0.19
Consensus pattern (27 bp):
ATAGGATAAAATGATCGAAATACCCCC
Found at i:10672296 original size:54 final size:54
Alignment explanation
Indices: 10672182--10672300 Score: 150
Period size: 54 Copynumber: 2.2 Consensus size: 54
10672172 AAAATGATCG
* * *
10672182 AAATACCCCTATAGAGTAAAATGACCGAAATACCCCCAAAGGATAAAATGATTA
1 AAATACCCCTATAGAGTAAAACGACCGAAATACCCCCAAAGGATAAAATAACTA
* **
10672236 AAATACCCCTATA-AGGTAAAACGATCGAAATACCCCCGTAGGATAAAATAACTA
1 AAATACCCCTATAGA-GTAAAACGACCGAAATACCCCCAAAGGATAAAATAACTA
**
10672290 TTATACCCCTA
1 AAATACCCCTA
10672301 GAAGATGAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
53 1 0.02
54 55 0.98
ACGTcount: A:0.45, C:0.23, G:0.12, T:0.20
Consensus pattern (54 bp):
AAATACCCCTATAGAGTAAAACGACCGAAATACCCCCAAAGGATAAAATAACTA
Found at i:10672339 original size:26 final size:25
Alignment explanation
Indices: 10672310--10672366 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
10672300 AGAAGATGAA
*
10672310 ATGACTGTTATGGC-CTTATGCTATGT
1 ATGACTGTT-TGGCTC-TATGATATGT
*
10672336 ATGACTGTTTTGCTCTATGATATGT
1 ATGACTGTTTGGCTCTATGATATGT
10672361 ATGACT
1 ATGACT
10672367 ATGGTTGAGC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 18 0.64
26 10 0.36
ACGTcount: A:0.21, C:0.14, G:0.21, T:0.44
Consensus pattern (25 bp):
ATGACTGTTTGGCTCTATGATATGT
Found at i:10676691 original size:25 final size:25
Alignment explanation
Indices: 10676658--10676707 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
10676648 AAAGACGGGT
10676658 TTTCAAAAGGTAAATGTTTTCAAAG
1 TTTCAAAAGGTAAATGTTTTCAAAG
10676683 TTTCAAAAGGTAAATGTTTTCAAAG
1 TTTCAAAAGGTAAATGTTTTCAAAG
10676708 ACACCACGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (25 bp):
TTTCAAAAGGTAAATGTTTTCAAAG
Found at i:10677000 original size:21 final size:21
Alignment explanation
Indices: 10676974--10677016 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
10676964 ATGTGTTTCA
10676974 ACCCTATTATTAGAAACTGAT
1 ACCCTATTATTAGAAACTGAT
10676995 ACCCTATTATTAGAAACTGAT
1 ACCCTATTATTAGAAACTGAT
10677016 A
1 A
10677017 ATGGAAACAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.33
Consensus pattern (21 bp):
ACCCTATTATTAGAAACTGAT
Found at i:10677773 original size:33 final size:33
Alignment explanation
Indices: 10677736--10677798 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
10677726 CAACAAAATT
* * *
10677736 ATATGAAAATGTATCTTATTAAAAGATACATCC
1 ATATGAAAAGGTATCTCATGAAAAGATACATCC
*
10677769 ATATGAAAGGGTATCTCATGAAAAGATACA
1 ATATGAAAAGGTATCTCATGAAAAGATACA
10677799 CCTATTAGAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.46, C:0.11, G:0.14, T:0.29
Consensus pattern (33 bp):
ATATGAAAAGGTATCTCATGAAAAGATACATCC
Found at i:10677967 original size:15 final size:15
Alignment explanation
Indices: 10677949--10677993 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
10677939 TATAACATTA
10677949 TTTTATTTTTCTAAC
1 TTTTATTTTTCTAAC
* *
10677964 TTTTATTTTCCT-AT
1 TTTTATTTTTCTAAC
10677978 TATTTATTTTTCTAAC
1 T-TTTATTTTTCTAAC
10677994 AGCTAGAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
14 2 0.08
15 21 0.88
16 1 0.04
ACGTcount: A:0.20, C:0.13, G:0.00, T:0.67
Consensus pattern (15 bp):
TTTTATTTTTCTAAC
Found at i:10680290 original size:31 final size:32
Alignment explanation
Indices: 10680228--10680292 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 32
10680218 GTATATAAAA
* * *
10680228 ATTAGATTAATTTATATTTTATATATCATTAT
1 ATTAAATTAATTTAAATATTATATATCATTAT
* *
10680260 ATTAAATT-ATTTAAATATTATTTATTATTAT
1 ATTAAATTAATTTAAATATTATATATCATTAT
10680291 AT
1 AT
10680293 ATTTTAATAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
31 21 0.75
32 7 0.25
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (32 bp):
ATTAAATTAATTTAAATATTATATATCATTAT
Found at i:10680308 original size:58 final size:62
Alignment explanation
Indices: 10680240--10680400 Score: 154
Period size: 59 Copynumber: 2.6 Consensus size: 62
10680230 TAGATTAATT
* ** * *
10680240 TATATTTTATATATCATTATATTAAATTATTTAAATATTATTTA-TTATTATATATTT-TAA-
1 TATA-TTTATATATCATTATATTAAATTATTTAAATATTAATTACTTAAAAAATATTTGGAAC
* *
10680300 TA-ATTTATATATCATCTATTTTACAAATAATTT--ATATTAATTACTTAAAAAATATTTGGAAC
1 TATATTTATATATCAT-TATATT--AAATTATTTAAATATTAATTACTTAAAAAATATTTGGAAC
*
10680362 TTATATTTCATGTATCATTATATTAAATTATTTAAATAT
1 -TATATTT-ATATATCATTATATTAAATTATTTAAATAT
10680401 CACATAATTT
Statistics
Matches: 80, Mismatches: 10, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
58 12 0.15
59 15 0.19
60 12 0.15
61 10 0.12
62 8 0.10
63 2 0.03
64 13 0.16
65 8 0.10
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.52
Consensus pattern (62 bp):
TATATTTATATATCATTATATTAAATTATTTAAATATTAATTACTTAAAAAATATTTGGAAC
Found at i:10680321 original size:24 final size:25
Alignment explanation
Indices: 10680269--10680336 Score: 68
Period size: 27 Copynumber: 2.6 Consensus size: 25
10680259 TATTAAATTA
*
10680269 TTTAAATATTATTTAT-TATTATATAT
1 TTTAAATA--ATTTATATATCATATAT
*
10680295 TTT-AATAATTTATATATCATCTAT
1 TTTAAATAATTTATATATCATATAT
10680319 TTTACAAATAATTTATAT
1 TTT--AAATAATTTATAT
10680337 TAATTACTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
23 6 0.17
24 11 0.31
25 4 0.11
26 3 0.08
27 12 0.33
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (25 bp):
TTTAAATAATTTATATATCATATAT
Found at i:10684053 original size:25 final size:29
Alignment explanation
Indices: 10684001--10684054 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
10683991 TAATATCATT
*
10684001 TTATGTTTATATGCTATATACAGAAATAA
1 TTATGTTTATATGCAATATACAGAAATAA
10684030 TTATGTTTAT-T-CAATATA-A-AAATAA
1 TTATGTTTATATGCAATATACAGAAATAA
10684055 ATTGATGTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 6 0.25
26 1 0.04
27 6 0.25
28 1 0.04
29 10 0.42
ACGTcount: A:0.44, C:0.06, G:0.07, T:0.43
Consensus pattern (29 bp):
TTATGTTTATATGCAATATACAGAAATAA
Found at i:10684877 original size:27 final size:27
Alignment explanation
Indices: 10684845--10684902 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
10684835 GATCATATTT
* *
10684845 TTAATATATTATTGAA-AAATATTTATA
1 TTAATATATTAAT-AATAAATATATATA
*
10684872 TTAATATTTTAATAATAAATATATATA
1 TTAATATATTAATAATAAATATATATA
10684899 TTAA
1 TTAA
10684903 AATTTATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 2 0.07
27 25 0.93
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (27 bp):
TTAATATATTAATAATAAATATATATA
Found at i:10684952 original size:37 final size:34
Alignment explanation
Indices: 10684869--10684954 Score: 82
Period size: 37 Copynumber: 2.4 Consensus size: 34
10684859 AAAAATATTT
*
10684869 ATATTAATATTTTAATAATAAATATATATATTAAA
1 ATATAAATA-TTTAATAATAAATATATATATTAAA
* *
10684904 ATTTATAAATATTTAATAATAAATGTTTTATAGTATAAA
1 A--TATAAATATTTAATAATAAAT-ATATATA-T-TAAA
*
10684943 ATATGAATATTT
1 ATATAAATATTT
10684955 TAATTATATA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
35 1 0.02
36 13 0.31
37 22 0.52
38 1 0.02
39 5 0.12
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (34 bp):
ATATAAATATTTAATAATAAATATATATATTAAA
Found at i:10686476 original size:51 final size:50
Alignment explanation
Indices: 10686403--10687159 Score: 674
Period size: 51 Copynumber: 15.5 Consensus size: 50
10686393 TGGAGGAGGA
* * *
10686403 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGGGGTGATGGTGGGGGT
1 GGTGG-GGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGT
* *
10686454 GGTGGGGGTGACTTGTACTTGTAGGGGTGCTTGGGTGGTGACGGT-G-GG-
1 GGTGGGGG-GACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGT
* *
10686502 GGT--GGGGACTTGTACTTGTAAGGATGCTTGGGGGGTGATGGTGGTGGT
1 GGTGGGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGT
* * *
10686550 GGTGGAGGTGACTTGTACTTGTAGGGGTGCTTGGGTGGTGA---CGGTGG-
1 GGTGG-GGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGT
*
10686597 GGT--GGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGACGGTGGTGGT
1 GGTGGGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGT
* *
10686645 GGTGGGGGGACTTGTACTTGT-AGGGATGCTTTGGTGGGGATGGTGGTGGT
1 GGTGGGGGGACTTGTACTTGTAAGGG-TGCTTGGGTGGTGATGGTGGTGGT
*
10686695 GGTGGTGGGGACTTGTACTTGT-AGGGATGCTTAGGTGGTGATGGTGGTGGT
1 GGTGG-GGGGACTTGTACTTGTAAGGG-TGCTTGGGTGGTGATGGTGGTGGT
* * * * *
10686746 GGT--GGAGACTTGTATTTGTAAGGATGCTTTGGTGGTGATGGTGGTGGA
1 GGTGGGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGT
* * * *
10686794 GGTGGTGGGGACTTGTATTTGTAAGGATGCTTTGGTGGTGATGGTGGTGGA
1 GGTGG-GGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGT
* * *
10686845 GGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGACGGAGGTGGA
1 GGTGG-GGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGT
* * * * *
10686896 GGTGGTGGAGACTTATACTTGTAA----ACTGGAGGTGGTG--GG-GGTGGA
1 GGTGG-GGGGACTTGTACTTGTAAGGGTGCTTG-GGTGGTGATGGTGGTGGT
* * * *** ** ** * * * *
10686941 GACT---TGTACTTGTAAGGGT--GCTTGGGT-GGTGATGGTGGGGGTGGG
1 G-GTGGGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGT
* * * *
10686986 GGT-GGC-GACTTGTACTTGTAGGGGTGTTTAGGTGGTGATGGTGGTGGT
1 GGTGGGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGT
* *
10687034 GGTGGTGGGGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGA
1 GGTGG-GGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGT
* * *
10687085 GGTGGAGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGA
1 GGTGG-GGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGT
* *
10687136 GGTGGTGGAGACTTATACTTGTAA
1 GGTGG-GGGGACTTGTACTTGTAA
10687160 ACAGGAGTTG
Statistics
Matches: 596, Mismatches: 74, Indels: 72
0.80 0.10 0.10
Matches are distributed among these distances:
42 14 0.02
44 36 0.06
45 54 0.09
46 7 0.01
47 17 0.03
48 77 0.13
49 10 0.02
50 46 0.08
51 335 0.56
ACGTcount: A:0.13, C:0.06, G:0.49, T:0.31
Consensus pattern (50 bp):
GGTGGGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGT
Found at i:10686545 original size:39 final size:40
Alignment explanation
Indices: 10686448--10686545 Score: 99
Period size: 45 Copynumber: 2.4 Consensus size: 40
10686438 GGGTGATGGT
* * *
10686448 GGGGGTGGTGG-GGGTGACTTGTACTTGTAGGGGTGCTTG
1 GGGGGTGATGGTGGGTGACTTGTACTTGTAAGGATGCTTG
* *
10686487 GGTGGTGACGGTGGGGGTGGGGACTTGTACTTGTAAGGATGCTTG
1 GGGGGTGATGGT--GGGT---GACTTGTACTTGTAAGGATGCTTG
10686532 GGGGGTGATGGTGG
1 GGGGGTGATGGTGG
10686546 TGGTGGTGGA
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
39 8 0.17
42 4 0.09
43 2 0.04
45 32 0.70
ACGTcount: A:0.10, C:0.07, G:0.54, T:0.29
Consensus pattern (40 bp):
GGGGGTGATGGTGGGTGACTTGTACTTGTAAGGATGCTTG
Found at i:10686860 original size:102 final size:102
Alignment explanation
Indices: 10686400--10687159 Score: 830
Period size: 102 Copynumber: 7.8 Consensus size: 102
10686390 AACTGGAGGA
* * * * *
10686400 GGAGGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGGGGTGATGGTGGGGGTGGTGG-GGGTG
1 GGAGGTGGTGGGGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGG-G
* * *
10686464 ACTTGTACTTGTAGGGGTGCTTGGGTGGTGA---CGGT
65 ACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGT
* * * *
10686499 -G-GG-GGTGGGGACTTGTACTTGTAAGGATGCTTGGGGGGTGATGGTGGTGGTGGTGGAGGTGA
1 GGAGGTGGTGGGGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGGGA
* * *
10686561 CTTGTACTTGTAGGGGTGCTTGGGTGGTGA---CGGT
66 CTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGT
* * *
10686595 ---GG-GGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGACGGTGGTGGTGGTGG-GGGGA
1 GGAGGTGGTGGGGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGGGA
* * *
10686655 CTTGTACTTGTAGGGATGCTTTGGTGGGGATGGTGGT
66 CTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGT
* * * *
10686692 GGTGGTGGTGGGGACTTGTACTTGTAGGGATGCTTAGGTGGTGATGGTGGT---GGTGGTGGAGA
1 GGAGGTGGTGGGGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGGGA
* *
10686754 CTTGTATTTGTAAGGATGCTTTGGTGGTGATGGTGGT
66 CTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGT
* *
10686791 GGAGGTGGTGGGGACTTGTATTTGTAAGGATGCTTTGGTGGTGATGGTGGTGGAGGTGGTGGGGA
1 GGAGGTGGTGGGGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGGGA
* * *
10686856 CTTGTACTTGTAAGGGTGCTTGGGTGGTGACGGAGGT
66 CTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGT
* * * *
10686893 GGAGGTGGTGGAGACTTATACTTGTAA--A--C-----T-G-GA-GGTGGTGGGGGT-G-GA-GA
1 GGAGGTGGTGGGGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGGGA
* *
10686943 CTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGG
66 CTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGT
* * * * * * * *
10686980 GGTGGGGGTGGCGACTTGTACTTGTAGGGGTGTTTAGGTGGTGATGGTGGTGGTGGTGGTGGGGA
1 GGAGGTGGTGGGGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGGGA
10687045 CTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGT
66 CTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGT
* * *
10687082 GGAGGTGGAGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGAGA
1 GGAGGTGGTGGGGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGGGA
*
10687147 CTTATACTTGTAA
66 CTTGTACTTGTAA
10687160 ACAGGAGTTG
Statistics
Matches: 574, Mismatches: 60, Indels: 51
0.84 0.09 0.07
Matches are distributed among these distances:
87 58 0.10
88 1 0.00
89 1 0.00
90 11 0.02
91 2 0.00
92 1 0.00
93 1 0.00
94 31 0.05
95 52 0.09
96 87 0.15
97 8 0.01
98 9 0.02
99 96 0.17
100 4 0.01
101 42 0.07
102 170 0.30
ACGTcount: A:0.13, C:0.06, G:0.49, T:0.31
Consensus pattern (102 bp):
GGAGGTGGTGGGGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGGGA
CTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGT
Found at i:10686939 original size:36 final size:36
Alignment explanation
Indices: 10686887--10686955 Score: 111
Period size: 36 Copynumber: 1.9 Consensus size: 36
10686877 GGGTGGTGAC
*
10686887 GGAGGTGGAGGTGGTGGAGACTTATACTTGTAAACT
1 GGAGGTGGAGGGGGTGGAGACTTATACTTGTAAACT
* *
10686923 GGAGGTGGTGGGGGTGGAGACTTGTACTTGTAA
1 GGAGGTGGAGGGGGTGGAGACTTATACTTGTAA
10686956 GGGTGCTTGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.22, C:0.07, G:0.43, T:0.28
Consensus pattern (36 bp):
GGAGGTGGAGGGGGTGGAGACTTATACTTGTAAACT
Found at i:10686941 original size:189 final size:194
Alignment explanation
Indices: 10686400--10687108 Score: 760
Period size: 189 Copynumber: 3.7 Consensus size: 194
10686390 AACTGGAGGA
* * * * *
10686400 GGAGGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGGGGTGATGGTGGGGGTGGTGG-GGGTG
1 GGAGGGGGTGGGGACTTGTACTTGTAAGGGTGCTTTGGTGGTGATGGTGGTGGTGGTGGTGGG-G
* *
10686464 ACTTGTACTTGTAGGGGTGCTTGGGTGGTGACGGT-G-GG-GGT-G-GG-GACTTGTACTTGTAA
65 ACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGAGACTTGTACTTGTAA
* * * *
10686523 GGATGCTTGGGGGGTGATGGTGGTGGTGGTGGAGGTGACTTGTACTTGTAGGGGTGCTTGGGTGG
130 -TA-GC-T----GGTGATGGTGGTGGGGGTGGA---GACTTGTACTTGTAAGGATGCTTGGGTGG
*
10686588 TGACGGT---
185 TGATGGTGGG
* *
10686595 ----GGGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGACGGTGGTGGTGGTGG-GGGGA
1 GGAGGGGGTGGGGACTTGTACTTGTAAGGGTGCTTTGGTGGTGATGGTGGTGGTGGTGGTGGGGA
* * * *
10686655 CTTGTACTTGT-AGGGATGCTTTGGTGGGGATGGTGGTGGTGGTGGTGGGGACTTGTACTTGTAG
66 CTTGTACTTGTAAGGG-TGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGAGACTTGTACTTGTA-
* * * *
10686719 GGATGCTTAGGTGGTGATGGTGGTGGTGGTGGAGACTTGTATTTGTAAGGATGCTTTGGTGGTGA
129 --A----TAGCTGGTGATGGTGGTGGGGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGA
*
10686784 TGGTGGT
188 TGGTGGG
* * * *
10686791 GGAGGTGGTGGGGACTTGTATTTGTAAGGATGCTTTGGTGGTGATGGTGGTGGAGGTGGTGGGGA
1 GGAGGGGGTGGGGACTTGTACTTGTAAGGGTGCTTTGGTGGTGATGGTGGTGGTGGTGGTGGGGA
* * *
10686856 CTTGTACTTGTAAGGGTGCTTGGGTGGTGACGGAGGTGGAGGTGGTGGAGACTTATACTTGTAA-
66 CTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGAGACTTGTACTTGTAAT
*
10686920 A-CT-G-GA-GGTGGTGGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGG
131 AGCTGGTGATGGTGGTGGGGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGG
* * *
10686980 GGTGGGGGTGGCGACTTGTACTTGTAGGGGTG-TTTAGGTGGTGATGGTGGTGGTGGTGGTGGGG
1 GGAGGGGGTGGGGACTTGTACTTGTAAGGGTGCTTT-GGTGGTGATGGTGGTGGTGGTGGTGGGG
* *
10687044 ACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGAGGAGACTTGTACTTGTAA
65 ACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGAGACTTGTACTTGTAA
10687109 GGATGCTTGG
Statistics
Matches: 443, Mismatches: 48, Indels: 52
0.82 0.09 0.10
Matches are distributed among these distances:
188 3 0.01
189 165 0.37
190 30 0.07
191 55 0.12
192 3 0.01
193 35 0.08
194 1 0.00
195 2 0.00
196 35 0.08
198 1 0.00
199 1 0.00
200 50 0.11
201 57 0.13
202 5 0.01
ACGTcount: A:0.13, C:0.06, G:0.49, T:0.31
Consensus pattern (194 bp):
GGAGGGGGTGGGGACTTGTACTTGTAAGGGTGCTTTGGTGGTGATGGTGGTGGTGGTGGTGGGGA
CTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGAGACTTGTACTTGTAAT
AGCTGGTGATGGTGGTGGGGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGG
Found at i:10686956 original size:87 final size:87
Alignment explanation
Indices: 10686839--10687005 Score: 244
Period size: 87 Copynumber: 1.9 Consensus size: 87
10686829 TGGTGATGGT
* * * *
10686839 GGTGGAGGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGACGGAGGTGGAGGTGGTGG
1 GGTGGAGGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGACGGAGGGGGAGGGGGTGG
10686904 AGACTTATACTTGTAAACTGGA
66 AGACTTATACTTGTAAACTGGA
* * * *
10686926 GGTGGTGGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGGGGTGGGGGTGG
1 GGTGGAGGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGACGGAGGGGGAGGGGGTGG
* *
10686991 CGACTTGTACTTGTA
66 AGACTTATACTTGTA
10687006 GGGGTGTTTA
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
87 70 1.00
ACGTcount: A:0.15, C:0.08, G:0.49, T:0.29
Consensus pattern (87 bp):
GGTGGAGGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGACGGAGGGGGAGGGGGTGG
AGACTTATACTTGTAAACTGGA
Found at i:10687044 original size:240 final size:239
Alignment explanation
Indices: 10686689--10687218 Score: 789
Period size: 240 Copynumber: 2.2 Consensus size: 239
10686679 TGGGGATGGT
* * * *
10686689 GGTGGTGGTGGTGGGGACTTGTACTTGT-AGGGATGCTTAGGTGGTGATGGT--GGTGGTGGTGG
1 GGTGGTGGGGGTGGAGACTTGTACTTGTAAGGG-TGCTTGGGTGGTGATGGTGGGGTGGGGGTGG
* *
10686751 AGACTTGTATTTGTAAGGATGCTTTGGTGGTGATGGTGGTGGAGGTGGTGGGGACTTGTATTTGT
65 AGACTTGTACTTGTAAGGATGCTTTGGTGGTGATGGTGGTGGAGGTGGTGGGGACTTGTACTTGT
* * * *
10686816 AAGGATGCTTTGGTGGTGATGGTGGTGGAGGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGT
130 AAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGAGGAGACTTGTACTTGTAAGGATGCTTGGGT
*
10686881 GGTGACGGAGGTGGAGGTGGTGGAGACTTATACTTGTAAACTGGA
195 GGTGACGGAGGTGGAGGTGGTGGAGACTTATACTTGTAAACAGGA
10686926 GGTGGTGGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGGGGTGGGGGTGG
1 GGTGGTGGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGT-GGGGTGGGGGTGG
* * * *
10686991 CGACTTGTACTTGTAGGGGTG-TTTAGGTGGTGATGGTGGTGGTGGTGGTGGGGACTTGTACTTG
65 AGACTTGTACTTGTAAGGATGCTTT-GGTGGTGATGGTGGTGGAGGTGGTGGGGACTTGTACTTG
10687055 TAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGAGGAGACTTGTACTTGTAAGGATGCTTGGG
129 TAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGAGGAGACTTGTACTTGTAAGGATGCTTGGG
* *
10687120 TGGTGATGGTGGTGGAGGTGGTGGAGACTTATACTTGTAAACAGGA
194 TGGTGACGGAGGTGGAGGTGGTGGAGACTTATACTTGTAAACAGGA
* * * * * * *
10687166 GTTGGTGGGGGAGGAGATTTGTACTTGTAAGGTTTCTTGTGTGGTGGTGGTGG
1 GGTGGTGGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGG
10687219 TGGAGGAGAG
Statistics
Matches: 264, Mismatches: 24, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
237 43 0.16
238 4 0.02
239 5 0.02
240 212 0.80
ACGTcount: A:0.15, C:0.06, G:0.47, T:0.32
Consensus pattern (239 bp):
GGTGGTGGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGGGTGGGGGTGGA
GACTTGTACTTGTAAGGATGCTTTGGTGGTGATGGTGGTGGAGGTGGTGGGGACTTGTACTTGTA
AGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGAGGAGACTTGTACTTGTAAGGATGCTTGGGTG
GTGACGGAGGTGGAGGTGGTGGAGACTTATACTTGTAAACAGGA
Found at i:10692173 original size:37 final size:36
Alignment explanation
Indices: 10692107--10692178 Score: 85
Period size: 36 Copynumber: 2.0 Consensus size: 36
10692097 ATTAAATTTA
10692107 TATTAGAAAATTATTTTGTGTATTAATAAAAATTAAG
1 TATTAGAAAATTATTTTGTGTATTAAT-AAAATTAAG
* *
10692144 TATT-GAAAATTAATTTTATTGT-TTGATAAAATTAA
1 TATTAGAAAATT-ATTTT-GTGTATTAATAAAATTAA
10692179 ATTTTTTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
36 15 0.48
37 13 0.42
38 3 0.10
ACGTcount: A:0.44, C:0.00, G:0.10, T:0.46
Consensus pattern (36 bp):
TATTAGAAAATTATTTTGTGTATTAATAAAATTAAG
Found at i:10694515 original size:124 final size:124
Alignment explanation
Indices: 10694295--10694538 Score: 398
Period size: 124 Copynumber: 2.0 Consensus size: 124
10694285 AAATGTTTGT
* * * *
10694295 CAATTAAGCACAAGTAGACAAGAATACACTTAAGCAAAAGAAAGCCAATAAGAGCTCACAGGTGT
1 CAATTAAGCACAAATAGACAAGAACACACTTAAGCAAAAGAAAGACAATAAGAGCTCACAAGTGT
*
10694360 GTACAAGAGAATTATGGAAGTATTAAGTACAAAGGTTGTTTGATTGATAATTTTTTTTC
66 GTACAAGAGAATTATGGAAGTATTAAGTACAAAGGTTGTTTCATTGATAATTTTTTTTC
** * *
10694419 CAATTAAGCACAAATAGACAAGAACACACTTGGGCAAAAGAAAGACGATAAGAGCTCATAAGTGT
1 CAATTAAGCACAAATAGACAAGAACACACTTAAGCAAAAGAAAGACAATAAGAGCTCACAAGTGT
*
10694484 GTACAAGAGAATTATGGAAGTATTGAGTACAAAGGTTGTTTCATTGATAATTTTT
66 GTACAAGAGAATTATGGAAGTATTAAGTACAAAGGTTGTTTCATTGATAATTTTT
10694539 GCTTCAATAT
Statistics
Matches: 110, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
124 110 1.00
ACGTcount: A:0.41, C:0.12, G:0.20, T:0.27
Consensus pattern (124 bp):
CAATTAAGCACAAATAGACAAGAACACACTTAAGCAAAAGAAAGACAATAAGAGCTCACAAGTGT
GTACAAGAGAATTATGGAAGTATTAAGTACAAAGGTTGTTTCATTGATAATTTTTTTTC
Found at i:10698617 original size:10 final size:10
Alignment explanation
Indices: 10698565--10698617 Score: 67
Period size: 10 Copynumber: 5.5 Consensus size: 10
10698555 GTTTTGCAAC
10698565 TTTTTAATTAA
1 TTTTTAA-TAA
10698576 TTTTT-ATAA
1 TTTTTAATAA
10698585 -TTTT-ATAA
1 TTTTTAATAA
*
10698593 TTTTTAATAT
1 TTTTTAATAA
10698603 TTTTTAATAA
1 TTTTTAATAA
10698613 TTTTT
1 TTTTT
10698618 TGTATGTATT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
8 8 0.21
9 7 0.18
10 18 0.47
11 5 0.13
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
TTTTTAATAA
Found at i:10714082 original size:24 final size:24
Alignment explanation
Indices: 10714055--10714109 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
10714045 AAAGAGCCTA
*
10714055 TAACGGGTAGCTCCGAAGATCAAT
1 TAACGGGTAGCTCCGAAGAGCAAT
*
10714079 TAACGAGTAGCTCCGAAGAGCAAT
1 TAACGGGTAGCTCCGAAGAGCAAT
10714103 TAACGGG
1 TAACGGG
10714110 AAGCACTGGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.35, C:0.20, G:0.27, T:0.18
Consensus pattern (24 bp):
TAACGGGTAGCTCCGAAGAGCAAT
Found at i:10714209 original size:26 final size:26
Alignment explanation
Indices: 10714155--10714210 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
10714145 GAGCACTACT
*
10714155 GGGAAGCTCACAAAGAGCCTTTAATC
1 GGGAAGCTCACAAAGAGCCTATAATC
* *
10714181 GGGAAGCTTACGAAGAGCCATATAA-C
1 GGGAAGCTCACAAAGAGCC-TATAATC
10714207 GGGA
1 GGGA
10714211 CACTCATAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.36, C:0.20, G:0.29, T:0.16
Consensus pattern (26 bp):
GGGAAGCTCACAAAGAGCCTATAATC
Found at i:10715760 original size:13 final size:13
Alignment explanation
Indices: 10715742--10715768 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
10715732 TTTCGTCCTC
10715742 GAAAATCTTACTA
1 GAAAATCTTACTA
10715755 GAAAATCTTACTA
1 GAAAATCTTACTA
10715768 G
1 G
10715769 TAAAGAGGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.15, G:0.11, T:0.30
Consensus pattern (13 bp):
GAAAATCTTACTA
Found at i:10723027 original size:5 final size:5
Alignment explanation
Indices: 10723017--10723047 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
10723007 AGCAAAACTT
10723017 TCTTC TCTTC TCTTC TCTTC TCTTC TCTTC T
1 TCTTC TCTTC TCTTC TCTTC TCTTC TCTTC T
10723048 AACGTTGGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (5 bp):
TCTTC
Found at i:10724362 original size:24 final size:24
Alignment explanation
Indices: 10724335--10724389 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
10724325 AAAGAGCCTA
*
10724335 TAACGGGTAGCTCC-AAAAAGTAAT
1 TAACGGGTAGCTCCGAAAAA-CAAT
*
10724359 TAACGGGTAGCTCCGAATAACAAT
1 TAACGGGTAGCTCCGAAAAACAAT
10724383 TAACGGG
1 TAACGGG
10724390 AAGCACCGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 24 0.86
25 4 0.14
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.20
Consensus pattern (24 bp):
TAACGGGTAGCTCCGAAAAACAAT
Found at i:10724470 original size:26 final size:25
Alignment explanation
Indices: 10724431--10724479 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
10724421 AAGCGAGCAC
*
10724431 TAATGGGAATCTCACAAAGAGTCTT
1 TAATGGGAAGCTCACAAAGAGTCTT
*
10724456 TAATCGGGAAGCTCACGAAGAGTC
1 TAAT-GGGAAGCTCACAAAGAGTC
10724480 AGATAACGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 4 0.19
26 17 0.81
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.22
Consensus pattern (25 bp):
TAATGGGAAGCTCACAAAGAGTCTT
Found at i:10726723 original size:140 final size:140
Alignment explanation
Indices: 10726488--10726747 Score: 378
Period size: 140 Copynumber: 1.9 Consensus size: 140
10726478 CTGGGTCGAT
* * * * * *
10726488 AGTTTCCTAAGTGTTGGGATAGACTTGCTAATATATGCTTTGACCAACTCTTTGTATAAGGGTTA
1 AGTTTCCTAAGTGTTGAGATAGACTTCCCAACATACGCTTTGACCAACTCATTGTATAAGGGTTA
* *
10726553 GGATATGCATGCCTAAGGCAACACTTAAATAAGAGTCGGCTTTGTCCATCACTATACCGACACTT
66 GGATATGCATGCCTAAGGCAACACTTAAATAAGAGTCGACTTTGTCCAACACTATACCGACACTT
10726618 TGGGGCTTAC
131 TGGGGCTTAC
* * * *
10726628 AGTTTCCTAAGTGTTGAGATCA-ACTTCCCGACATACGCTTTGGCCAGCTCATTGTATAATGGTT
1 AGTTTCCTAAGTGTTGAGAT-AGACTTCCCAACATACGCTTTGACCAACTCATTGTATAAGGGTT
* *
10726692 GGGATATGCATGCCTAAGGCAACACTTAAATATGAGTCGACTTTGTCCAACACTAT
65 AGGATATGCATGCCTAAGGCAACACTTAAATAAGAGTCGACTTTGTCCAACACTAT
10726748 GCCGTGTTTT
Statistics
Matches: 105, Mismatches: 14, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
140 104 0.99
141 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (140 bp):
AGTTTCCTAAGTGTTGAGATAGACTTCCCAACATACGCTTTGACCAACTCATTGTATAAGGGTTA
GGATATGCATGCCTAAGGCAACACTTAAATAAGAGTCGACTTTGTCCAACACTATACCGACACTT
TGGGGCTTAC
Found at i:10728914 original size:16 final size:15
Alignment explanation
Indices: 10728889--10728918 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
10728879 TGCTATGTTG
10728889 TTTTAATATAAATGA
1 TTTTAATATAAATGA
10728904 TTTTGAATATAAATG
1 TTTT-AATATAAATG
10728919 TATCAATGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.47
Consensus pattern (15 bp):
TTTTAATATAAATGA
Found at i:10733091 original size:35 final size:35
Alignment explanation
Indices: 10733052--10733198 Score: 132
Period size: 35 Copynumber: 4.5 Consensus size: 35
10733042 AGACATGTCC
*
10733052 ATCCCAACATTTTTAAGGTTGCCTTAGACGGGTCT
1 ATCCCAACCTTTTTAAGGTTGCCTTAGACGGGTCT
** **
10733087 ATCCCAACCTTTTTAAAATTTTCTTAGACGGG---
1 ATCCCAACCTTTTTAAGGTTGCCTTAGACGGGTCT
*
10733119 -T-----CCTTTTTAAGGTTGCCTTAGACGGGTGT
1 ATCCCAACCTTTTTAAGGTTGCCTTAGACGGGTCT
* * * **
10733148 ATCCCAACTTTTTTAAGGTTGACTTAAACAAGTCT
1 ATCCCAACCTTTTTAAGGTTGCCTTAGACGGGTCT
10733183 ATCCCAACCTTTTTAA
1 ATCCCAACCTTTTTAA
10733199 AGTCACCTTT
Statistics
Matches: 87, Mismatches: 16, Indels: 18
0.72 0.13 0.15
Matches are distributed among these distances:
26 21 0.24
30 1 0.01
31 1 0.01
35 64 0.74
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (35 bp):
ATCCCAACCTTTTTAAGGTTGCCTTAGACGGGTCT
Found at i:10734877 original size:3 final size:3
Alignment explanation
Indices: 10734869--10734918 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
10734859 TTTTATGACC
10734869 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
10734917 AT
1 AT
10734919 GTGTTTTCCT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:10738185 original size:50 final size:48
Alignment explanation
Indices: 10738127--10738281 Score: 135
Period size: 50 Copynumber: 3.2 Consensus size: 48
10738117 TCATCTTGCT
10738127 CCACTGTAACTTCAGGGAGATAAGATCCACCATTGTAGTTTCAATTTGAC
1 CCACTGTAACTTCAGGGAGATAAGAT-CA-CATTGTAGTTTCAATTTGAC
*
10738177 CCACTGTAACTTCAGGG-GTATAGGAT----TTGTAGTTTC-ATCTTG-C
1 CCACTGTAACTTCAGGGAG-ATAAGATCACATTGTAGTTTCAAT-TTGAC
* * * * *
10738220 TTCACTGTAACTTCAAGGAGATAAGATTCACTATGGTAGCTTCAATCTGAC
1 -CCACTGTAACTTCAGGGAGATAAGA-TCAC-ATTGTAGTTTCAATTTGAC
*
10738271 CCACTGCAACT
1 CCACTGTAACT
10738282 CTAGGGGTAT
Statistics
Matches: 84, Mismatches: 9, Indels: 24
0.72 0.08 0.21
Matches are distributed among these distances:
43 3 0.04
44 33 0.39
45 2 0.02
49 1 0.01
50 42 0.50
51 3 0.04
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.32
Consensus pattern (48 bp):
CCACTGTAACTTCAGGGAGATAAGATCACATTGTAGTTTCAATTTGAC
Found at i:10738226 original size:44 final size:44
Alignment explanation
Indices: 10738082--10738247 Score: 149
Period size: 44 Copynumber: 3.6 Consensus size: 44
10738072 TTTAATCCAT
* * * * * *
10738082 TCCACTGCAATTTTAGGGATATAAGTTTTGTAGCTTCATCTTGC
1 TCCACTGTAACTTCAGGGAGATAAGATTTGTAGTTTCATCTTGC
10738126 TCCACTGTAACTTCAGGGAGATAAGATCCACCATTGTAGTTTCAAT-TTGAC
1 TCCACTGTAACTTCAGGGAGATAAGAT------TTGTAGTTTC-ATCTTG-C
*
10738177 -CCACTGTAACTTCAGGG-GTATAGGATTTGTAGTTTCATCTTGC
1 TCCACTGTAACTTCAGGGAG-ATAAGATTTGTAGTTTCATCTTGC
* *
10738220 TTCACTGTAACTTCAAGGAGATAAGATT
1 TCCACTGTAACTTCAGGGAGATAAGATT
10738248 CACTATGGTA
Statistics
Matches: 100, Mismatches: 10, Indels: 24
0.75 0.07 0.18
Matches are distributed among these distances:
43 3 0.03
44 57 0.57
45 1 0.01
49 1 0.01
50 35 0.35
51 3 0.03
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.36
Consensus pattern (44 bp):
TCCACTGTAACTTCAGGGAGATAAGATTTGTAGTTTCATCTTGC
Found at i:10738464 original size:282 final size:282
Alignment explanation
Indices: 10737939--10738778 Score: 981
Period size: 282 Copynumber: 3.0 Consensus size: 282
10737929 TTAATCTGAC
* **
10737939 CCACTGCAACTTTAGGGAGATAAGATT-AGCTATGGTAGTTTAAATCCAACCCACTACAACTCTA
1 CCACTGCAACTTTAGGGAGATAAGATTCA-CTATGGTAGTTTCAATCTGACCCACTACAACTCTA
* * * * * *
10738003 GGGGTATAGGATTTGTAGCTTCATCTTAC-TCTACTGCAACTTTAAAGAGATGAGATTTGTTGTT
65 GGGGTATAGGATTTGTAGCTTCATCTTACTTC-ACTGCAACTTCAAGGAGATAAGATCTGCTATT
* * * * * *
10738067 GTAGTTTTAATCC-ATTCCACTGCAA-TTTTAGGGATATAAGTTTTGTAGCTTCATCTTGCTCCA
129 GTAGTTTCAATCCGA-CCCACTGCAACTTTAAGGG-TATAGGATTTGTAGTTTCATCTTGCTCCA
* * * * * *
10738130 CTGTAACTTCAGGGAGATAAGATCCACCATTGTAGTTTCAATTTGACCCACTGTAACTTCAGGGG
192 CTGCAACTTTAGGGAGATAAGATTCGCCATTGTAGTTTCAATCTGACCCACTGCAACTTCAGGGG
10738195 TATAGGATTTGTAGTTTCATCTTGCT
257 TATAGGATTTGTAGTTTCATCTTGCT
* * * * * *
10738221 TCACTGTAACTTCAAGGAGATAAGATTCACTATGGTAGCTTCAATCTGACCCACTGCAACTCTAG
1 CCACTGCAACTTTAGGGAGATAAGATTCACTATGGTAGTTTCAATCTGACCCACTACAACTCTAG
* **
10738286 GGGTATAGGATTTGTAGCTTCATCTTACTTCACTACAACTTCAAGGAGATAAGATCCACTATTGT
66 GGGTATAGGATTTGTAGCTTCATCTTACTTCACTGCAACTTCAAGGAGATAAGATCTGCTATTGT
* * * * * *
10738351 AATGTCAATCCGACCCACTGCAACTTCAAGGGTATAGGGTTTGTAGTTTCATCTTACTCCGCTGC
131 AGTTTCAATCCGACCCACTGCAACTTTAAGGGTATAGGATTTGTAGTTTCATCTTGCTCCACTGC
* * * * * *
10738416 AACTTTAGGGAGATAAGATTCGCTATGGTAGCTTCAATCCGGCCCACTGCAACTTTAGGGGTATA
196 AACTTTAGGGAGATAAGATTCGCCATTGTAGTTTCAATCTGACCCACTGCAACTTCAGGGGTATA
* *
10738481 GGATTTCTAGCTTCATCTTGCT
261 GGATTTGTAGTTTCATCTTGCT
* * * ** * * *
10738503 CCACTACAACTTTAGGGAGATAAGATCCACCATTCTGGTTTCAATCTGAACCACTACAACTTTAG
1 CCACTGCAACTTTAGGGAGATAAGATTCACTATGGTAGTTTCAATCTGACCCACTACAACTCTAG
* * * * * *
10738568 GGGTATAGGATTTATTGCTTCATCTTGCTCCACTGCAACTTCAAGGGGATAAGATCTGCCATTGT
66 GGGTATAGGATTTGTAGCTTCATCTTACTTCACTGCAACTTCAAGGAGATAAGATCTGCTATTGT
** * *
10738633 AGTTTCAATTTGACCCACTGCAACTTTAAGGGTATAGGATTTATAGCTTT-ATCTTGCTCCACTA
131 AGTTTCAATCCGACCCACTGCAACTTTAAGGGTATAGGATTTGTAG-TTTCATCTTGCTCCACTG
* * *
10738697 CAACTTTAAGGAGATAAGATAT-GCCATTGTAGTTTCAATCTGACCCACTACAACTTCAGGAGTA
195 CAACTTTAGGGAGATAAGAT-TCGCCATTGTAGTTTCAATCTGACCCACTGCAACTTCAGGGGTA
* *
10738761 TAGGGTTTGTGGTTTCAT
259 TAGGATTTGTAGTTTCAT
10738779 TGATCTGTTA
Statistics
Matches: 463, Mismatches: 89, Indels: 12
0.82 0.16 0.02
Matches are distributed among these distances:
282 449 0.97
283 14 0.03
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.33
Consensus pattern (282 bp):
CCACTGCAACTTTAGGGAGATAAGATTCACTATGGTAGTTTCAATCTGACCCACTACAACTCTAG
GGGTATAGGATTTGTAGCTTCATCTTACTTCACTGCAACTTCAAGGAGATAAGATCTGCTATTGT
AGTTTCAATCCGACCCACTGCAACTTTAAGGGTATAGGATTTGTAGTTTCATCTTGCTCCACTGC
AACTTTAGGGAGATAAGATTCGCCATTGTAGTTTCAATCTGACCCACTGCAACTTCAGGGGTATA
GGATTTGTAGTTTCATCTTGCT
Found at i:10738656 original size:50 final size:49
Alignment explanation
Indices: 10738597--10738754 Score: 134
Period size: 50 Copynumber: 3.3 Consensus size: 49
10738587 TCATCTTGCT
*
10738597 CCACTGCAACTTCAAGGGGATAAGATCTGCCATTGTAGTTTCAATTTGAC
1 CCACTACAACTTCAAGGGGATAAGAT-TGCCATTGTAGTTTCAATTTGAC
* * * * *
10738647 CCACTGCAACTTTAAGGGTATAGGA-T----TTATAGCTTT--ATCTTG-C
1 CCACTACAACTTCAAGGGGATAAGATTGCCATTGTAG-TTTCAAT-TTGAC
* * *
10738690 TCCACTACAACTTTAAGGAGATAAGATATGCCATTGTAGTTTCAATCTGAC
1 -CCACTACAACTTCAAGGGGATAAGAT-TGCCATTGTAGTTTCAATTTGAC
10738741 CCACTACAACTTCA
1 CCACTACAACTTCA
10738755 GGAGTATAGG
Statistics
Matches: 85, Mismatches: 11, Indels: 24
0.71 0.09 0.20
Matches are distributed among these distances:
43 3 0.04
44 29 0.34
45 3 0.04
46 1 0.01
48 1 0.01
49 3 0.04
50 42 0.49
51 3 0.04
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (49 bp):
CCACTACAACTTCAAGGGGATAAGATTGCCATTGTAGTTTCAATTTGAC
Found at i:10738752 original size:94 final size:94
Alignment explanation
Indices: 10737939--10738770 Score: 837
Period size: 94 Copynumber: 8.9 Consensus size: 94
10737929 TTAATCTGAC
* * * * ** * *
10737939 CCACTGCAACTTTAGGGAGATAAGAT-TAGCTATGGTAGTTTAAATCCAACCCACTACAACTCTA
1 CCACTGCAACTTTAAGGAGATAAGATCT-GCCATTGTAGTTTCAATCTGACCCACTGCAACTTTA
*
10738003 GGGGTATAGGATTTGTAGCTTCATCTTACT
65 GGGGTATAGGATTTGTAGCTTCATCTTGCT
* * * * *** * * * *
10738033 CTACTGCAACTTTAAAGAGATGAGATTTGTTGTTGTAGTTTTAATC-CATTCCACTGCAATTTTA
1 CCACTGCAACTTTAAGGAGATAAGATCTGCCATTGTAGTTTCAATCTGA-CCCACTGCAACTTTA
* * *
10738097 GGGATATAAGTTTTGTAGCTTCATCTTGCT
65 GGGGTATAGGATTTGTAGCTTCATCTTGCT
* * * ** * * *
10738127 CCACTGTAACTTCAGGGAGATAAGATCCACCATTGTAGTTTCAATTTGACCCACTGTAACTTCAG
1 CCACTGCAACTTTAAGGAGATAAGATCTGCCATTGTAGTTTCAATCTGACCCACTGCAACTTTAG
*
10738192 GGGTATAGGATTTGTAGTTTCATCTTGCT
66 GGGTATAGGATTTGTAGCTTCATCTTGCT
* * * * * *
10738221 TCACTGTAACTTCAAGGAGATAAGAT-T-CACTATGGTAGCTTCAATCTGACCCACTGCAACTCT
1 CCACTGCAACTTTAAGGAGATAAGATCTGC-C-ATTGTAGTTTCAATCTGACCCACTGCAACTTT
*
10738284 AGGGGTATAGGATTTGTAGCTTCATCTTACT
64 AGGGGTATAGGATTTGTAGCTTCATCTTGCT
* * * ** * * * * * *
10738315 TCACTACAACTTCAAGGAGATAAGATCCACTATTGTAATGTCAATCCGACCCACTGCAACTTCAA
1 CCACTGCAACTTTAAGGAGATAAGATCTGCCATTGTAGTTTCAATCTGACCCACTGCAACTTTAG
* * *
10738380 GGGTATAGGGTTTGTAGTTTCATCTTACT
66 GGGTATAGGATTTGTAGCTTCATCTTGCT
* * * * * * *
10738409 CCGCTGCAACTTTAGGGAGATAAGAT-TCGCTATGGTAGCTTCAATCCGGCCCACTGCAACTTTA
1 CCACTGCAACTTTAAGGAGATAAGATCT-GCCATTGTAGTTTCAATCTGACCCACTGCAACTTTA
*
10738473 GGGGTATAGGATTTCTAGCTTCATCTTGCT
65 GGGGTATAGGATTTGTAGCTTCATCTTGCT
* * ** * * * *
10738503 CCACTACAACTTTAGGGAGATAAGATCCACCATTCTGGTTTCAATCTGAACCACTACAACTTTAG
1 CCACTGCAACTTTAAGGAGATAAGATCTGCCATTGTAGTTTCAATCTGACCCACTGCAACTTTAG
* *
10738568 GGGTATAGGATTTATTGCTTCATCTTGCT
66 GGGTATAGGATTTGTAGCTTCATCTTGCT
* * * *
10738597 CCACTGCAACTTCAAGGGGATAAGATCTGCCATTGTAGTTTCAATTTGACCCACTGCAACTTTAA
1 CCACTGCAACTTTAAGGAGATAAGATCTGCCATTGTAGTTTCAATCTGACCCACTGCAACTTTAG
* *
10738662 GGGTATAGGATTTATAGCTTTATCTTGCT
66 GGGTATAGGATTTGTAGCTTCATCTTGCT
* * * *
10738691 CCACTACAACTTTAAGGAGATAAGATATGCCATTGTAGTTTCAATCTGACCCACTACAACTTCAG
1 CCACTGCAACTTTAAGGAGATAAGATCTGCCATTGTAGTTTCAATCTGACCCACTGCAACTTTAG
* *
10738756 GAGTATAGGGTTTGT
66 GGGTATAGGATTTGT
10738771 GGTTTCATTG
Statistics
Matches: 606, Mismatches: 123, Indels: 18
0.81 0.16 0.02
Matches are distributed among these distances:
92 1 0.00
93 2 0.00
94 600 0.99
95 2 0.00
96 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (94 bp):
CCACTGCAACTTTAAGGAGATAAGATCTGCCATTGTAGTTTCAATCTGACCCACTGCAACTTTAG
GGGTATAGGATTTGTAGCTTCATCTTGCT
Found at i:10751918 original size:111 final size:107
Alignment explanation
Indices: 10751794--10751999 Score: 243
Period size: 107 Copynumber: 1.9 Consensus size: 107
10751784 AGTTTTCCAC
*
10751794 ATATCATGTA-TTTTAAACTATTTCAAACTATTATCCATTTTAAATTTTTTATATATTATTTATT
1 ATATCATGTATTTTTAAACTATTTCAAA-TATTATCCATTTTAAA-CTTTT-TATA-TA-TTATT
*
10751858 TTTAAACTATCATATATATTATTTATTTTGAATTGTTTTTTTTATAT
61 TTTAAACTATCATATATATTATTTATTTTAAATTGTTTTTTTTATAT
* * * *** **
10751905 ATATCATTTATTTTTTAACTGTTTTGTATATTATTTATTTTAAACTTTTTATATATTATTTTTAA
1 ATATCATGTATTTTTAAACTATTTCAAATATTATCCATTTTAAACTTTTTATATATTATTTTTAA
* * *
10751970 ACTGTCTTATATGTTATTTATTTTAAATTG
66 ACTATCATATATATTATTTATTTTAAATTG
10752000 CTTTGTATAT
Statistics
Matches: 81, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
107 36 0.44
108 2 0.02
109 4 0.05
110 4 0.05
111 23 0.28
112 12 0.15
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.59
Consensus pattern (107 bp):
ATATCATGTATTTTTAAACTATTTCAAATATTATCCATTTTAAACTTTTTATATATTATTTTTAA
ACTATCATATATATTATTTATTTTAAATTGTTTTTTTTATAT
Found at i:10751965 original size:21 final size:22
Alignment explanation
Indices: 10751939--10751988 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
10751929 TGTATATTAT
*
10751939 TTATTTTAAACT-TTTTATATA
1 TTATTTTAAACTGTCTTATATA
*
10751960 TTATTTTTAAACTGTCTTATATG
1 TTA-TTTTAAACTGTCTTATATA
10751983 TTATTT
1 TTATTT
10751989 ATTTTAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 3 0.12
22 12 0.48
23 10 0.40
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.62
Consensus pattern (22 bp):
TTATTTTAAACTGTCTTATATA
Found at i:10752039 original size:52 final size:51
Alignment explanation
Indices: 10751904--10752064 Score: 145
Period size: 48 Copynumber: 3.2 Consensus size: 51
10751894 TTTTTTTATA
* * ** *
10751904 TATATCATTTATTTTTTAACTGTTTTGTATATTATTTATTTTAAACT--TTT
1 TATAT-ATTTATTTTTAAACTGTCTTACATATTATTTATTTTAAATTGCTTT
* *
10751954 TATATA-TTATTTTTAAACTGTCTTATATGTTATTTATTTTAAATTGCTTT
1 TATATATTTATTTTTAAACTGTCTTACATATTATTTATTTTAAATTGCTTT
** * *
10752004 GTATATTATTTA-TTTTAATTTGTTTTACATATTA-TTACTTTAAATTG-TTT
1 -TATA-TATTTATTTTTAAACTGTCTTACATATTATTTATTTTAAATTGCTTT
10752054 TATACTATTTA
1 TATA-TATTTA
10752065 CTTCAAATTG
Statistics
Matches: 94, Mismatches: 12, Indels: 11
0.80 0.10 0.09
Matches are distributed among these distances:
48 34 0.36
49 11 0.12
50 11 0.12
51 16 0.17
52 19 0.20
53 3 0.03
ACGTcount: A:0.28, C:0.06, G:0.05, T:0.61
Consensus pattern (51 bp):
TATATATTTATTTTTAAACTGTCTTACATATTATTTATTTTAAATTGCTTT
Done.