Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 36 of 222
Found at i:10752062 original size:26 final size:25
Alignment explanation
Indices: 10751742--10752088 Score: 179
Period size: 26 Copynumber: 13.4 Consensus size: 25
10751732 CCTTTTTCTC
10751742 ATATATTATTTATTTTAAATTGTTTT
1 ATATATTA-TTATTTTAAATTGTTTT
* **
10751768 AT-TATTATTTATTTTAAGTT-TTCC
1 ATATATTA-TTATTTTAAATTGTTTT
* * * * *
10751792 ACATATCATGTATTTTAAACTATTTC
1 ATATATTAT-TATTTTAAATTGTTTT
* *
10751818 AAACTATTATCCATTTTAAATT-TTTT
1 ATA-TATTAT-TATTTTAAATTGTTTT
* * **
10751844 ATATATTATTTATTTTTAAACTATCAT
1 ATATATTA-TTA-TTTTAAATTGTTTT
*
10751871 ATATATTATTTATTTTGAATTGTTTTTTTT
1 ATATATTA-TTATTTTAAATTG----TTTT
* *
10751901 ATATATATCATTTATTTTTTAACTGTTTT
1 ATATAT-T-A-TTA-TTTTAAATTGTTTT
* *
10751930 GTATATTATTTATTTTAAACT-TTTT
1 ATATATTA-TTATTTTAAATTGTTTT
* *
10751955 ATATATTA-T-TTTTAAACTGTCTT
1 ATATATTATTATTTTAAATTGTTTT
* *
10751978 ATATGTTATTTATTTTAAATTGCTTT
1 ATATATTA-TTATTTTAAATTGTTTT
* *
10752004 GTATATTATTTATTTTAATTTGTTTT
1 ATATATTA-TTATTTTAAATTGTTTT
* *
10752030 ACATATTATTACTTTAAATTGTTTT
1 ATATATTATTATTTTAAATTGTTTT
* * * *
10752055 ATACTA-T-TTACTTCAAATTGCTCT
1 ATA-TATTATTATTTTAAATTGTTTT
10752079 ATATATTATT
1 ATATATTATT
10752089 TTGTTTCGTT
Statistics
Matches: 254, Mismatches: 46, Indels: 43
0.74 0.13 0.13
Matches are distributed among these distances:
22 9 0.04
23 13 0.05
24 22 0.09
25 68 0.27
26 77 0.30
27 33 0.13
28 1 0.00
29 9 0.04
30 8 0.03
31 1 0.00
32 5 0.02
33 8 0.03
ACGTcount: A:0.30, C:0.07, G:0.04, T:0.59
Consensus pattern (25 bp):
ATATATTATTATTTTAAATTGTTTT
Found at i:10752063 original size:75 final size:74
Alignment explanation
Indices: 10751927--10752089 Score: 195
Period size: 75 Copynumber: 2.2 Consensus size: 74
10751917 TTTTAACTGT
* ** *
10751927 TTTGTATATTATTTATTTTAAACTTTTTATATATTATTTTTAAACTGTCTTATATGTTATTTATT
1 TTTGTATATTATTTATTTTAAACTTTTTACATATTATTTTTAAACTGTCTTATATACTATTTACT
*
10751992 TTAAATTGC
66 TCAAATTGC
** *
10752001 TTTGTATATTATTTATTTTAATTTGTTTTACATATTATTACTTTAAATTGT-TT-TATACTATTT
1 TTTGTATATTATTTATTTTAAACT-TTTTACATATTATT--TTTAAACTGTCTTATATACTATTT
10752064 ACTTCAAATTGC
63 ACTTCAAATTGC
* *
10752076 TCTATATATTATTT
1 TTTGTATATTATTT
10752090 TGTTTCGTTT
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
74 22 0.29
75 43 0.57
76 2 0.03
77 9 0.12
ACGTcount: A:0.28, C:0.07, G:0.05, T:0.60
Consensus pattern (74 bp):
TTTGTATATTATTTATTTTAAACTTTTTACATATTATTTTTAAACTGTCTTATATACTATTTACT
TCAAATTGC
Found at i:10752081 original size:24 final size:23
Alignment explanation
Indices: 10752038--10752085 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
10752028 TTACATATTA
* * *
10752038 TTACTTTAAATTGTTTTATACTAT
1 TTACTTCAAATTGCTCTATA-TAT
10752062 TTACTTCAAATTGCTCTATATAT
1 TTACTTCAAATTGCTCTATATAT
10752085 T
1 T
10752086 ATTTTGTTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 4 0.19
24 17 0.81
ACGTcount: A:0.29, C:0.12, G:0.04, T:0.54
Consensus pattern (23 bp):
TTACTTCAAATTGCTCTATATAT
Found at i:10752085 original size:49 final size:51
Alignment explanation
Indices: 10751977--10752088 Score: 120
Period size: 49 Copynumber: 2.2 Consensus size: 51
10751967 TAAACTGTCT
* * * * * * * *
10751977 TATATGTTATTTATTTTAAATTGCTTTGTATATTATTTATTTTAATTTGTTT
1 TATATATTA-TTACTTTAAATTGCTTTGTATACTATTTACTTCAAATTGCTC
*
10752029 TACATATTATTACTTTAAATTG-TTT-TATACTATTTACTTCAAATTGCTC
1 TATATATTATTACTTTAAATTGCTTTGTATACTATTTACTTCAAATTGCTC
10752078 TATATATTATT
1 TATATATTATT
10752089 TTGTTTCGTT
Statistics
Matches: 50, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
49 28 0.56
50 3 0.06
51 12 0.24
52 7 0.14
ACGTcount: A:0.29, C:0.07, G:0.05, T:0.59
Consensus pattern (51 bp):
TATATATTATTACTTTAAATTGCTTTGTATACTATTTACTTCAAATTGCTC
Found at i:10754931 original size:3 final size:3
Alignment explanation
Indices: 10754923--10754948 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
10754913 AGAAAGGCAC
10754923 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
10754949 GGTCATAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:10755954 original size:17 final size:18
Alignment explanation
Indices: 10755934--10755969 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
10755924 AATCATAATC
10755934 TTTAAAAAAATT-TAAAA
1 TTTAAAAAAATTCTAAAA
*
10755951 TTTAAAAAATTTCTAAAA
1 TTTAAAAAAATTCTAAAA
10755969 T
1 T
10755970 AGTAATTTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (18 bp):
TTTAAAAAAATTCTAAAA
Found at i:10759217 original size:24 final size:24
Alignment explanation
Indices: 10759137--10759269 Score: 126
Period size: 26 Copynumber: 5.3 Consensus size: 24
10759127 GCTCTTTCAT
*
10759137 TATTATTTATTTTAAGTTTTTTTTCATA
1 TATTATTTA-TTTAA--ATTTTTT-ATA
*
10759165 TATTATTTATTTGAAATTGTTTTACA
1 TATTATTTATTT-AAATT-TTTTATA
10759191 TATTATTTATTTAAATTTTTTATA
1 TATTATTTATTTAAATTTTTTATA
* * *
10759215 TATTTTTTATTTTAAACTATTATATA
1 TATTATTTA-TTTAAA-TTTTTTATA
*
10759241 TATTATCT-TTTAAA-TTTTTATA
1 TATTATTTATTTAAATTTTTTATA
10759263 TATTATT
1 TATTATT
10759270 CTTTTTTAAA
Statistics
Matches: 90, Mismatches: 11, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
22 12 0.13
24 20 0.22
25 11 0.12
26 29 0.32
27 7 0.08
28 11 0.12
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (24 bp):
TATTATTTATTTAAATTTTTTATA
Found at i:10759217 original size:50 final size:50
Alignment explanation
Indices: 10759137--10759269 Score: 144
Period size: 50 Copynumber: 2.6 Consensus size: 50
10759127 GCTCTTTCAT
* * * *
10759137 TATTATTTATTTTAAGTTTTTTTTCATATATTATTTATTTGAAATTGTTTTACA
1 TATTATTTA-TTTAA--ATTTTTT-ATATATTATTTATTTGAAACTATTATACA
* * *
10759191 TATTATTTATTTAAATTTTTTATATATTTTTTATTTTAAACTATTATATA
1 TATTATTTATTTAAATTTTTTATATATTATTTATTTGAAACTATTATACA
*
10759241 TATTATCT-TTTAAA-TTTTTATATATTATT
1 TATTATTTATTTAAATTTTTTATATATTATT
10759270 CTTTTTTAAA
Statistics
Matches: 70, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
48 14 0.20
49 6 0.09
50 30 0.43
51 6 0.09
53 5 0.07
54 9 0.13
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (50 bp):
TATTATTTATTTAAATTTTTTATATATTATTTATTTGAAACTATTATACA
Found at i:10759275 original size:24 final size:24
Alignment explanation
Indices: 10759137--10759275 Score: 111
Period size: 24 Copynumber: 5.5 Consensus size: 24
10759127 GCTCTTTCAT
*
10759137 TATTATTTATTTTAAGTTTTTTTTCATA
1 TATTATTT-TTTTAA--ATTTTTT-ATA
* *
10759165 TATTATTTATTTGAAATTGTTTTACA
1 TATTATTT-TTTTAAATT-TTTTATA
*
10759191 TATTATTTATTTAAATTTTTTATA
1 TATTATTTTTTTAAATTTTTTATA
* * *
10759215 TATTTTTTATTTTAAACTATTATATA
1 TATTATTT-TTTTAAA-TTTTTTATA
*
10759241 TATTA-TCTTTTAAA-TTTTTATA
1 TATTATTTTTTTAAATTTTTTATA
10759263 TATTATTCTTTTT
1 TATTATT-TTTTT
10759276 TAAAAACTGT
Statistics
Matches: 91, Mismatches: 15, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
22 11 0.12
23 1 0.01
24 24 0.26
25 14 0.15
26 23 0.25
27 4 0.04
28 14 0.15
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (24 bp):
TATTATTTTTTTAAATTTTTTATA
Found at i:10759318 original size:88 final size:88
Alignment explanation
Indices: 10759208--10759387 Score: 208
Period size: 88 Copynumber: 2.0 Consensus size: 88
10759198 TATTTAAATT
*
10759208 TTTTATATATTTTTTATTTTAAACTATTATATATATTA-TC-TTTTAAATTTTTATATATTATTC
1 TTTTATATATTATTTATTTTAAACTATTATAT-TATTATTCATTTTAAATTTTTATATA-TATT-
10759271 TTTT-TTAAAAACTGTTTTA-TATGTTA
63 TTTTATTAAAAACT-TTTTATTAT-TTA
* * * * *
10759297 TTTT-TATATTATTTATTTTAAATTGTTTTATTATTATTCATTTTAAGTTTTTTTATATATTTTT
1 TTTTATATATTATTTATTTTAAACTATTATATTATTATTCATTTTAAATTTTTATATATATTTTT
**
10759361 TATTTGAAACTTTTTATTATTTA
66 TATTAAAAACTTTTTATTATTTA
10759384 TTTT
1 TTTT
10759388 GAATTGTTCT
Statistics
Matches: 79, Mismatches: 8, Indels: 10
0.81 0.08 0.10
Matches are distributed among these distances:
87 21 0.27
88 39 0.49
89 19 0.24
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.66
Consensus pattern (88 bp):
TTTTATATATTATTTATTTTAAACTATTATATTATTATTCATTTTAAATTTTTATATATATTTTT
TATTAAAAACTTTTTATTATTTA
Found at i:10759325 original size:25 final size:25
Alignment explanation
Indices: 10759297--10759417 Score: 90
Period size: 25 Copynumber: 4.9 Consensus size: 25
10759287 TTATATGTTA
10759297 TTTTTATATTATTTATTTTAAATTG
1 TTTTTATATTATTTATTTTAAATTG
* * *
10759322 -TTTTATTATTATTCATTTTAAGTTT
1 TTTTTA-TATTATTTATTTTAAATTG
* *
10759347 TTTTATATATTTTTTATTTGAAA---
1 TTTT-TATATTATTTATTTTAAATTG
* *
10759370 CTTTT-TATTATTTATTTTGAATTG
1 TTTTTATATTATTTATTTTAAATTG
* *
10759394 TTCTTATGAATTATTTATCTTAAA
1 TTTTTAT--ATTATTTATTTTAAA
10759418 CTATTATTTA
Statistics
Matches: 72, Mismatches: 15, Indels: 16
0.70 0.15 0.16
Matches are distributed among these distances:
21 13 0.18
22 1 0.01
23 3 0.04
24 8 0.11
25 17 0.24
26 15 0.21
27 15 0.21
ACGTcount: A:0.27, C:0.03, G:0.05, T:0.64
Consensus pattern (25 bp):
TTTTTATATTATTTATTTTAAATTG
Found at i:10759417 original size:138 final size:138
Alignment explanation
Indices: 10759163--10759417 Score: 324
Period size: 138 Copynumber: 1.8 Consensus size: 138
10759153 TTTTTTTTCA
* *
10759163 TATATTATTTATTTGAAATTGTTTTACATATTATTTATTTAAATTTTTTATATATTTTTTATTTT
1 TATATTATTTATTTGAAATTGTTTTACATATTATTCATTTAAATTTTTTATATATTTTTTATTTG
* * *
10759228 AAACTATTATATATATTATCTTTTAAATTTTTATATATTATTCTTTTTTAAAAACTGTTTTATAT
66 AAACTATTATATATATTATCTTTGAAATTTTTATATATTATTCTATCTTAAAAACTGTTTTATAT
10759293 GTTATTTT
131 GTTATTTT
* * *
10759301 TATATTATTTATTTTAAATTGTTTTA-TTATTATTCATTTTAAGTTTTTTTATATATTTTTTATT
1 TATATTATTTATTTGAAATTGTTTTACATATTATTCA-TTTAA-ATTTTTTATATATTTTTTATT
* *
10759365 TGAAACT-TTTTAT-TATTTAT-TTTGAATTGTTCTTATGA-ATTATT-TATCTTAAA
64 TGAAACTATTATATATA-TTATCTTTGAAAT-TT-TTAT-ATATTATTCTATCTTAAA
10759418 CTATTATTTA
Statistics
Matches: 101, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
137 16 0.16
138 48 0.48
139 36 0.36
140 1 0.01
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.63
Consensus pattern (138 bp):
TATATTATTTATTTGAAATTGTTTTACATATTATTCATTTAAATTTTTTATATATTTTTTATTTG
AAACTATTATATATATTATCTTTGAAATTTTTATATATTATTCTATCTTAAAAACTGTTTTATAT
GTTATTTT
Found at i:10764495 original size:14 final size:15
Alignment explanation
Indices: 10764469--10764501 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
10764459 TGTCAAATTG
*
10764469 GGAAGGACCTTATGT
1 GGAAGGACCTTATCT
10764484 GGAAGG-CCTTATCT
1 GGAAGGACCTTATCT
10764498 GGAA
1 GGAA
10764502 AAACGTTGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.24
Consensus pattern (15 bp):
GGAAGGACCTTATCT
Found at i:10765534 original size:44 final size:45
Alignment explanation
Indices: 10765470--10766082 Score: 315
Period size: 44 Copynumber: 13.5 Consensus size: 45
10765460 AGCAAACCTT
*
10765470 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTA-CAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAGCAA
* * * *** *
10765514 GTCTTATCTCCTTGAAGTTGCAGTGGAGTAGACAAAAGATAGCAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAGCAA
* * * * * *
10765559 ATCTTATTTTCCTGAAGTTGTAGTGGAACAGATTAAAGCTATAAATTGCAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-T-T--A--GCAA
** * *
10765610 ATCTTATCTTTCTGAAGTTGCAGTAGAGCATATT--A--TAGCAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAGCAA
* * * * *
10765651 ACCTTATCTCCCTAAAGTTGTAGCGGAGCAGGTTGAAGTTA-CAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAGCAA
* * * *
10765695 GTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGATAGCAAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAGC-AA
* * * *
10765741 AT-TTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTATAAATTACAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-T-T--A--GCAA
** * * ** *
10765791 ATCTTATCTCTTTGAAGTTGCAGTAGATCAGA--CCA--TATCAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAGCAA
* ** * * ** *
10765832 A-CATTATCTCCCTGAAGTTACAGTGGAATAGGTTAAAAATA-AATCA
1 ATC-TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAGCA--A
* * * *
10765878 ATCTTATCACCCTGAAGTTGCAGTAGAGTAGATTGAAGATAGGCTACAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-G---CAA
* * * **
10765927 ATCTTATCTCCCTGAAGTTACAGTGGAGTAGATTAAAGCCA-CAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAGCAA
* * * *
10765971 ACCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAA-TATA-CCA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGT-TAGCAA
* * * * **
10766015 ATCTTATCTCCCTGAAGTTACAATGGAGTAGATTGAAGCTA-TTA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAGCAA
* *
10766059 ATCCTATCTCCCTGAGGTTGCAGT
1 ATCTTATCTCCCTGAAGTTGCAGT
10766083 AGGTCGAATT
Statistics
Matches: 430, Mismatches: 104, Indels: 70
0.71 0.17 0.12
Matches are distributed among these distances:
40 1 0.00
41 54 0.13
43 4 0.01
44 162 0.38
45 69 0.16
46 36 0.08
47 3 0.01
49 40 0.09
50 4 0.01
51 57 0.13
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (45 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAGCAA
Found at i:10765776 original size:181 final size:182
Alignment explanation
Indices: 10765472--10765965 Score: 618
Period size: 181 Copynumber: 2.7 Consensus size: 182
10765462 CAAACCTTAT
*
10765472 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCTTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAG
** * *
10765537 TGGAGTAGACAAAAGATAGC-AAATCTTATTTTCCTGAAGTTGTAGTGGAACAGATTAAAGCTAT
66 TGGAGTAGACTGAAGATAGCAAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTAT
* * * **
10765601 AAATTGCAGATCTTATCT-TTCTGAAGTTGCAGTAGAGCATATTATAGCAAAC
131 AAATTACAAATCTTATCTCTT-TGAAGTTGCAGTAGAGCAGACCATAGCAAAC
* * * *
10765653 CTTATCTCCCTAAAGTTGTAGCGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTAAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAG
*
10765718 TGGAGCAGACTGAAGATAGCAAAAT-TTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTAT
66 TGGAGTAGACTGAAGATAGCAAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTAT
* *
10765782 AAATTACAAATCTTATCTCTTTGAAGTTGCAGTAGATCAGACCATATCAAAC
131 AAATTACAAATCTTATCTCTTTGAAGTTGCAGTAGAGCAGACCATAGCAAAC
* * ** * * * *
10765834 ATTATCTCCCTGAAGTTACAGTGGAATAGGTTAAAAATAAATCAA-TCTTATCACCCTGAAGTTG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTT-GAAGT-TA-CAAGTCTTATCTCCCTGAAGTTG
* * * * **
10765898 CAGTAGAGTAGATTGAAGATAGGCTACAAATCTTATCTCCCTGAAGTTACAGTGGAGTAGATTAA
63 CAGTGGAGTAGACTGAAGATA-GC-A-AAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAA
10765963 AGC
125 AGC
10765966 CACAAACCTT
Statistics
Matches: 268, Mismatches: 36, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
181 181 0.68
182 9 0.03
183 36 0.13
184 5 0.02
185 1 0.00
186 4 0.01
187 32 0.12
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (182 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAG
TGGAGTAGACTGAAGATAGCAAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTAT
AAATTACAAATCTTATCTCTTTGAAGTTGCAGTAGAGCAGACCATAGCAAAC
Found at i:10767706 original size:28 final size:25
Alignment explanation
Indices: 10767668--10767760 Score: 116
Period size: 24 Copynumber: 3.6 Consensus size: 25
10767658 GCTCTTTCAT
10767668 TATTATTTATTTTAAGTTTTTTTTCATA
1 TATTATTTATTTTAA--TTTTTTT-ATA
* * *
10767696 TATTATTTATTTTAAACTGTTTTACA
1 TATTATTTATTTT-AATTTTTTTATA
10767722 TATTATTTA-TTTAATTTTTTTATA
1 TATTATTTATTTTAATTTTTTTATA
10767746 TATTATTTATTTTAA
1 TATTATTTATTTTAA
10767761 ACTATTATAT
Statistics
Matches: 57, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
24 18 0.32
25 8 0.14
26 11 0.19
27 5 0.09
28 13 0.23
29 2 0.04
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.66
Consensus pattern (25 bp):
TATTATTTATTTTAATTTTTTTATA
Found at i:10767718 original size:31 final size:27
Alignment explanation
Indices: 10767662--10767760 Score: 109
Period size: 28 Copynumber: 3.8 Consensus size: 27
10767652 AAAAAAGCTC
10767662 TTTCATTATTATTTATTTTAAGTTTTT
1 TTTCATTATTATTTATTTTAAGTTTTT
** *
10767689 TTTCATATATTATTTATTTTAAACTGTT
1 TTTCAT-TATTATTTATTTTAAGTTTTT
*
10767717 TTACA-TATTATTTA-TTTAA--TTTT
1 TTTCATTATTATTTATTTTAAGTTTTT
10767740 TTT-ATATATTATTTATTTTAA
1 TTTCAT-TATTATTTATTTTAA
10767761 ACTATTATAT
Statistics
Matches: 62, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
22 1 0.02
23 5 0.08
24 9 0.15
25 10 0.16
26 9 0.15
27 6 0.10
28 22 0.35
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (27 bp):
TTTCATTATTATTTATTTTAAGTTTTT
Found at i:10767748 original size:24 final size:25
Alignment explanation
Indices: 10767668--10767777 Score: 114
Period size: 26 Copynumber: 4.2 Consensus size: 25
10767658 GCTCTTTCAT
*
10767668 TATTATTTATTTTAAGTTTTTTTTCATA
1 TATTATTTATTTTAA--CTTTTTT-ATA
* *
10767696 TATTATTTATTTTAAACTGTTTTACA
1 TATTATTTATTTT-AACTTTTTTATA
*
10767722 TATTATTTA-TTTAATTTTTTTATA
1 TATTATTTATTTTAACTTTTTTATA
* *
10767746 TATTATTTATTTTAAACTATTATATA
1 TATTATTTATTTT-AACTTTTTTATA
10767772 TATTAT
1 TATTAT
10767778 CTTTTAAATT
Statistics
Matches: 70, Mismatches: 9, Indels: 8
0.80 0.10 0.09
Matches are distributed among these distances:
24 18 0.26
25 6 0.09
26 26 0.37
27 5 0.07
28 13 0.19
29 2 0.03
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.64
Consensus pattern (25 bp):
TATTATTTATTTTAACTTTTTTATA
Found at i:10767749 original size:50 final size:50
Alignment explanation
Indices: 10767668--10767810 Score: 164
Period size: 50 Copynumber: 2.8 Consensus size: 50
10767658 GCTCTTTCAT
* *
10767668 TATTATTTATTTTAAGTTTTTTTTCATATATTATTTATTTTAAACTGTTTTACA
1 TATTATTTA-TTTAA--TTTTTTT-ATATATTATTTATTTTAAACTATTATACA
*
10767722 TATTATTTATTTAATTTTTTTATATATTATTTATTTTAAACTATTATATA
1 TATTATTTATTTAATTTTTTTATATATTATTTATTTTAAACTATTATACA
* * * *
10767772 TATTATCT-TTTAA-ATTTGTATATATTATTCTTTTTTAAA
1 TATTATTTATTTAATTTTTTTATATATTATT-TATTTTAAA
10767811 AATTGTTTTA
Statistics
Matches: 81, Mismatches: 7, Indels: 7
0.85 0.07 0.07
Matches are distributed among these distances:
48 14 0.17
49 13 0.16
50 33 0.41
51 7 0.09
53 5 0.06
54 9 0.11
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (50 bp):
TATTATTTATTTAATTTTTTTATATATTATTTATTTTAAACTATTATACA
Found at i:10767777 original size:22 final size:20
Alignment explanation
Indices: 10767740--10767800 Score: 59
Period size: 22 Copynumber: 2.8 Consensus size: 20
10767730 ATTTAATTTT
10767740 TTTATATATTATTTATTTTAAA
1 TTTATATA-TA-TTATTTTAAA
10767762 CTATTATATATATTATCTTTTAAA
1 -T-TTATATATATTA--TTTTAAA
*
10767786 TTTGTATATATTATT
1 TTTATATATATTATT
10767801 CTTTTTTAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
20 2 0.06
22 14 0.41
23 4 0.12
24 14 0.41
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (20 bp):
TTTATATATATTATTTTAAA
Found at i:10767806 original size:24 final size:25
Alignment explanation
Indices: 10767688--10767806 Score: 102
Period size: 24 Copynumber: 4.8 Consensus size: 25
10767678 TTTAAGTTTT
*
10767688 TTTTCATATATTATTTATTTTAAACTG
1 TTTT-ATATATTATTT-TTTTAAACTA
* * * *
10767715 TTTTACATATTATTTATTT-AATTT
1 TTTTATATATTATTTTTTTAAACTA
10767739 TTTTATATATTATTTATTTTAAACTA
1 TTTTATATATTATTT-TTTTAAACTA
* *
10767765 TTATATATATTA-TCTTTTAAA-T-
1 TTTTATATATTATTTTTTTAAACTA
*
10767787 TTGTATATATTATTCTTTTT
1 TTTTATATATTATT-TTTTT
10767807 TAAAAATTGT
Statistics
Matches: 76, Mismatches: 12, Indels: 11
0.77 0.12 0.11
Matches are distributed among these distances:
22 11 0.14
23 2 0.03
24 28 0.37
25 7 0.09
26 24 0.32
27 4 0.05
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.63
Consensus pattern (25 bp):
TTTTATATATTATTTTTTTAAACTA
Found at i:10767816 original size:26 final size:25
Alignment explanation
Indices: 10767742--10767816 Score: 68
Period size: 26 Copynumber: 3.0 Consensus size: 25
10767732 TTAATTTTTT
* *
10767742 TATATATTATT-TATTTTAAACTATTA
1 TATATATTATTCT-TTTTAAA-AATTG
*
10767768 TATATATTA-TC-TTTT-AAATTTG
1 TATATATTATTCTTTTTAAAAATTG
10767790 TATATATTATTCTTTTTTAAAAATTG
1 TATATATTATTC-TTTTTAAAAATTG
10767816 T
1 T
10767817 TTTATATGTT
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
22 11 0.28
23 4 0.10
24 4 0.10
25 5 0.12
26 16 0.40
ACGTcount: A:0.35, C:0.04, G:0.03, T:0.59
Consensus pattern (25 bp):
TATATATTATTCTTTTTAAAAATTG
Found at i:10767856 original size:25 final size:24
Alignment explanation
Indices: 10767828--10767916 Score: 87
Period size: 24 Copynumber: 3.8 Consensus size: 24
10767818 TTATATGTTA
10767828 TTTTTATATTATTTATTTTAAACT
1 TTTTTATATTATTTATTTTAAACT
* * *
10767852 GTTTTACTATTATTCATTTT-AAGT
1 TTTTTA-TATTATTTATTTTAAACT
* *
10767876 TTTTATATATTGTTTATTTGAAAC-
1 TTTT-TATATTATTTATTTTAAACT
10767900 -TTTT-TATTATTTATTTT
1 TTTTTATATTATTTATTTT
10767917 GAATTGTTCT
Statistics
Matches: 52, Mismatches: 10, Indels: 9
0.73 0.14 0.13
Matches are distributed among these distances:
21 11 0.21
22 1 0.02
23 3 0.06
24 21 0.40
25 16 0.31
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.65
Consensus pattern (24 bp):
TTTTTATATTATTTATTTTAAACT
Found at i:10767894 original size:24 final size:26
Alignment explanation
Indices: 10767828--10767948 Score: 80
Period size: 25 Copynumber: 5.0 Consensus size: 26
10767818 TTATATGTTA
10767828 TTTT-TATATTATTTATTTTAAACTG
1 TTTTATATATTATTTATTTTAAACTG
* * *
10767853 TTTTA-CTATTATTCATTTT-AAGT-
1 TTTTATATATTATTTATTTTAAACTG
* *
10767876 TTTTATATATTGTTTATTTGAAAC--
1 TTTTATATATTATTTATTTTAAACTG
* *
10767900 -TTT-T-TATTATTTATTTTGAATTG
1 TTTTATATATTATTTATTTTAAACTG
* **
10767923 TTCTTATAAATTATTTAGCTTAAACT
1 TT-TTATATATTATTTATTTTAAACT
10767949 ATTATTTACT
Statistics
Matches: 70, Mismatches: 17, Indels: 16
0.68 0.17 0.16
Matches are distributed among these distances:
21 13 0.19
22 1 0.01
23 8 0.11
24 14 0.20
25 20 0.29
26 1 0.01
27 13 0.19
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.60
Consensus pattern (26 bp):
TTTTATATATTATTTATTTTAAACTG
Found at i:10787289 original size:12 final size:12
Alignment explanation
Indices: 10787272--10787342 Score: 56
Period size: 14 Copynumber: 5.6 Consensus size: 12
10787262 AAGTCGTGGG
10787272 TTCTTTTTTCTT
1 TTCTTTTTTCTT
10787284 TTC-TTTTTCTTT
1 TTCTTTTTTC-TT
10787296 TTCTTTCTTTCTGT
1 TTCTTT-TTTCT-T
* *
10787310 TTCGTTTTGCTTT
1 TTCTTTTTTC-TT
10787323 TGTCTTTCTTT-TT
1 T-TCTTT-TTTCTT
10787336 TTCTTTT
1 TTCTTTT
10787343 ATTACTATAA
Statistics
Matches: 48, Mismatches: 4, Indels: 15
0.72 0.06 0.22
Matches are distributed among these distances:
11 7 0.15
12 13 0.27
13 11 0.23
14 15 0.31
15 2 0.04
ACGTcount: A:0.00, C:0.17, G:0.06, T:0.77
Consensus pattern (12 bp):
TTCTTTTTTCTT
Found at i:10787291 original size:6 final size:6
Alignment explanation
Indices: 10787276--10787342 Score: 57
Period size: 6 Copynumber: 10.7 Consensus size: 6
10787266 CGTGGGTTCT
* *
10787276 TTTTTC -TTTTC TTTTTC TTTTTC TTTCTTTC TGTTTC GTTTTGC TTTTGTC
1 TTTTTC TTTTTC TTTTTC TTTTTC -TT-TTTC TTTTTC -TTTTTC TTTT-TC
10787327 TTTCTT- TTTTTC TTTT
1 TTT-TTC TTTTTC TTTT
10787343 ATTACTATAA
Statistics
Matches: 50, Mismatches: 4, Indels: 14
0.74 0.06 0.21
Matches are distributed among these distances:
5 7 0.14
6 26 0.52
7 12 0.24
8 5 0.10
ACGTcount: A:0.00, C:0.16, G:0.06, T:0.78
Consensus pattern (6 bp):
TTTTTC
Found at i:10790576 original size:541 final size:543
Alignment explanation
Indices: 10788205--10790922 Score: 4429
Period size: 544 Copynumber: 5.0 Consensus size: 543
10788195 TAACAATGTC
* ** *
10788205 TTCCGTTTCATGAATTAA-TTAAGCCCGATCATTCTTCTTTCACTAAATTTCATCCAACAAACAA
1 TTCCGTTTCTTGAATTAATTTCGGCCCGATCATTCTTCTTTCACTCAATTTCATCCAACAAACAA
** *
10788269 GCGATCGACACTTACGACCATATAAGGCTTCATACGGAGCCATTTGAATACTCGATTGAAAACTA
66 GTTATCGACACCTACGACCATATAAGGCTTCATACGGAGCCATTTGAATACTCGATTGAAAACTA
* ** * * *
10788334 TTTTTGTATACAAATTCGGCCATCGGTAAGTAACGCTCACAACCTAATTCAAAATCAATAACATA
131 TTGTTGTATACAAATTCGGCCAAAGGTAAGTAACGCTCCCAACCTGATTCAAAATCAATAACACA
* *
10788399 AGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTTAGATTGTCCATCAATCTGCTGGTGAA
196 AGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTCAGATTGTCCATCAGTCTGCTGGTGAA
* * *
10788464 AAGCTGTGCTAAAATTAAGTCGTGTACCAAGAGATTCGTACAACTGTTTCCAAAATCTTGAAGTG
261 AAGCTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGTGCAACTGTTTCCAAAATCTCGAAGTG
* * * *
10788529 AACCACGGATCTCGATCTGAAATTATTAACATAGGGAAACCGTGCAATCTTAATATTTCTTAAAT
326 AACCGCGGATCTCGATCAGAAATTATTAACATAGGGACACCGTGCAATCTTACTATTTCTTAAAT
10788594 ATAAACTTCAGCAAGCTTTTGAAGTGACCAATTTGTCCTGGCTACAATGAAATGAGCCGATTTCG
391 ATAAACTTCAGCAAGCTTTTGAAGTGACCAATTTGTCCTGGCTACAATGAAATGAGCCGATTTCG
*
10788659 TAAGTCGATCAACAATCACCCATACAGTATTTTTCTTACTTGCCGATAAAGGTAACCCTGTTACA
456 TAAGTCGATCAACAATCACCCATACAGCATTTTTCTTACTTGCCGATAAAGGTAACCCTGTTACA
10788724 AAATCCATTGTGATACAATCCCA
521 AAATCCATTGTGATACAATCCCA
* * * *
10788747 TTCCGTTTCTTGAATTAATTTCGACTCGATCATTCTTCTTTCACTCAATTTCGTCCAGCAAACAA
1 TTCCGTTTCTTGAATTAATTTCGGCCCGATCATTCTTCTTTCACTCAATTTCATCCAACAAACAA
*
10788812 GTTATCGACACCTACGACCATATAAGGCTTCATACGAAGCCATTTGAATACTCGATTGAAAACTA
66 GTTATCGACACCTACGACCATATAAGGCTTCATACGGAGCCATTTGAATACTCGATTGAAAACTA
* *
10788877 TTGTTGTATACAAATTTGGCCAAAGGTAAATAACGCTCCCAACCTGATTCAAAATCAATAACACA
131 TTGTTGTATACAAATTCGGCCAAAGGTAAGTAACGCTCCCAACCTGATTCAAAATCAATAACACA
10788942 AGTACGAAGCATGTCTTCCAAAATCTGAATAA-ATTGCTCAGATTGTCCATCAGTCTGCTGGTGA
196 AGTACGAAGCATGTCTTCCAAAATCTGAATAACA-TGCTCAGATTGTCCATCAGTCTGCTGGTGA
* *
10789006 AAAGCTGTGCTAAAATTAAGTCGCGTACCAAGAGAGTCGTGCAACTGTTTCTAAAATCTCGAAGT
260 AAAGCTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGTGCAACTGTTTCCAAAATCTCGAAGT
* * * *
10789071 GAACCGTGAATCTCAATCAGAAATTATTAACATAGGGGACACCGTGAAATCTTACTATTTCTTAA
325 GAACCGCGGATCTCGATCAGAAATTATTAACATA-GGGACACCGTGCAATCTTACTATTTCTTAA
* * * *
10789136 ATATAAACTTCAACAAGCTTTTGAAGTGACCAATTTTTCCTGGCTACAATAAAATGAGACGATTT
389 ATATAAACTTCAGCAAGCTTTTGAAGTGACCAATTTGTCCTGGCTACAATGAAATGAGCCGATTT
* * * *
10789201 CGTAAGTCGATCAACAATCACCCATACAGTATTTTCCTTACTTGCCAATAAAGGTAACCCTATTA
454 CGTAAGTCGATCAACAATCACCCATACAGCATTTTTCTTACTTGCCGATAAAGGTAACCCTGTTA
10789266 CAAAATCCATTGTGATACAATCCCA
519 CAAAATCCATTGTGATACAATCCCA
* *
10789291 TTCCGTTTTTTGAATTAATTTCGGCCCAATCATTCTTCTTTCACTCAATTTCATCCAACAAACAA
1 TTCCGTTTCTTGAATTAATTTCGGCCCGATCATTCTTCTTTCACTCAATTTCATCCAACAAACAA
* *
10789356 GTTATCGACACCTACGACCATATAAAGCTCCATACGGAGCCATTTGAATACTCGATTGAAAACTA
66 GTTATCGACACCTACGACCATATAAGGCTTCATACGGAGCCATTTGAATACTCGATTGAAAACTA
* *
10789421 TTATTGTATACAAATTTGGCCAAAGGTAAGTAACGCTCCCAACCTGATTCAAAATCAATAACACA
131 TTGTTGTATACAAATTCGGCCAAAGGTAAGTAACGCTCCCAACCTGATTCAAAATCAATAACACA
*
10789486 ACTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTCAGATTGTCCATCAGTCTGCTGGTGAA
196 AGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTCAGATTGTCCATCAGTCTGCTGGTGAA
* *
10789551 AAGCTGTGCTAAAATTAAGTCGCGTACCAAGAGAGTCGTGCAACTGTTTCTAAAATCTCGAAGTG
261 AAGCTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGTGCAACTGTTTCCAAAATCTCGAAGTG
* *
10789616 AACCGCGAATCTC-AGTCAGAAATTATTGACATAGGGGACACCGTGCAATCTTACTATTTCTTAA
326 AACCGCGGATCTCGA-TCAGAAATTATTAACATA-GGGACACCGTGCAATCTTACTATTTCTTAA
10789680 ATATAAACTTCAGCAAGCTTTTGAAGTGACCAATTTGTCCTGGCTACAATGAAATGAGCCGATTT
389 ATATAAACTTCAGCAAGCTTTTGAAGTGACCAATTTGTCCTGGCTACAATGAAATGAGCCGATTT
* * *
10789745 CATAAGTCGATCAATAATCACCCACACAGCATTTTTCTTACTTGCCGATAAAGGTAACCCTGTTA
454 CGTAAGTCGATCAACAATCACCCATACAGCATTTTTCTTACTTGCCGATAAAGGTAACCCTGTTA
* *
10789810 CAAAATCCATTATGATACAATCTCA
519 CAAAATCCATTGTGATACAATCCCA
* * * *
10789835 TTCCGTTTCTTGAATTAATTTCAGCCCGATCATTCTTCTTTCACTCAATTCCATCTAACAAATAA
1 TTCCGTTTCTTGAATTAATTTCGGCCCGATCATTCTTCTTTCACTCAATTTCATCCAACAAACAA
* *
10789900 GTTATCGACACCTACGACCATATAAGGCTTCATACGGAGCCATTTGGATACTCTATTGAAAACTA
66 GTTATCGACACCTACGACCATATAAGGCTTCATACGGAGCCATTTGAATACTCGATTGAAAACTA
* * *
10789965 TTGTTGTATACAAATTCGGCCAAAGGTAAGTAACGCTCCCAACCTGCTTCGAAATCTATAACACA
131 TTGTTGTATACAAATTCGGCCAAAGGTAAGTAACGCTCCCAACCTGATTCAAAATCAATAACACA
*
10790030 AGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTCAGATTGTCCGTCAGTCTGCTGGTGAA
196 AGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTCAGATTGTCCATCAGTCTGCTGGTGAA
* * *
10790095 AAGCTGTGCTAAAATTAAGTCGCGTACCAAGAGATTTGTGTAACAGTTTCCAAAATCTCGAAGTG
261 AAGCTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGTGCAACTGTTTCCAAAATCTCGAAGTG
* * *
10790160 AACCACGGATCTCGATCAGAAATTATTAACATAGGGACACCATACAATCTTACTATTTCTTAAAT
326 AACCGCGGATCTCGATCAGAAATTATTAACATAGGGACACCGTGCAATCTTACTATTTCTTAAAT
* * * *
10790225 ATAAACTTCAGCAAGCTTTTGAAGTGACCAATTTGTCCCGGCTACAATGAAGT-AGCTGATTTCA
391 ATAAACTTCAGCAAGCTTTTGAAGTGACCAATTTGTCCTGGCTACAATGAAATGAGCCGATTTCG
*
10790289 TAAGTCGATCAACAATCACCTATACAGCATTTTTCTTACTTGCCGATAAAGGTAACCCTGTTACA
456 TAAGTCGATCAACAATCACCCATACAGCATTTTTCTTACTTGCCGATAAAGGTAACCCTGTTACA
10790354 AAATCCATTGTGATACAATCCCA
521 AAATCCATTGTGATACAATCCCA
* * *
10790377 TTCCCTTTCTTGAATTAA-TTCGGCCCGGTCATTCTTCTTTCACTCAATTCCATCCAACAAACAA
1 TTCCGTTTCTTGAATTAATTTCGGCCCGATCATTCTTCTTTCACTCAATTTCATCCAACAAACAA
10790441 GTTATCGACACCTACGACCATATAAGGCTTCATACGGAGCCATTTGAATACTCGATTGAAAACTA
66 GTTATCGACACCTACGACCATATAAGGCTTCATACGGAGCCATTTGAATACTCGATTGAAAACTA
* *
10790506 TTGTTGTATACAAATTCGGCCAAAGGTAAGTAACGCTCCCAACCTGACTCAAAATCAATAACATA
131 TTGTTGTATACAAATTCGGCCAAAGGTAAGTAACGCTCCCAACCTGATTCAAAATCAATAACACA
* * * ** *
10790571 AGTACGAAGCATGTCTTTCAAAATCTGAATAACATACTTAGATTACCCGTCAGTCTGCTGGTGAA
196 AGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTCAGATTGTCCATCAGTCTGCTGGTGAA
* ** *
10790636 AAGTTGTGCTAAAATTAAGTCGTATACCAAGAGATTCGTGCAATTGTTTCCAAAATCTCGAAGTG
261 AAGCTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGTGCAACTGTTTCCAAAATCTCGAAGTG
* *
10790701 AACCGCGGATCTCGATCAGAAATTATTGACATAGGGACACCGTGCAATCTTACTATTTCTTAAAA
326 AACCGCGGATCTCGATCAGAAATTATTAACATAGGGACACCGTGCAATCTTACTATTTCTTAAAT
* *
10790766 ATAAACTTCAGCAAGCTTTTGAAGTGAACAATTTGTCCTAGCTACAATGAAATGAGCCGATTTCG
391 ATAAACTTCAGCAAGCTTTTGAAGTGACCAATTTGTCCTGGCTACAATGAAATGAGCCGATTTCG
* * *
10790831 TAAGTCGATCAACAATCACTCATACAACATTTTTCTTACTTACCGATAAAGGTAACCCTGTTACA
456 TAAGTCGATCAACAATCACCCATACAGCATTTTTCTTACTTGCCGATAAAGGTAACCCTGTTACA
*
10790896 AAATCCATTGTGATACAATCTCA
521 AAATCCATTGTGATACAATCCCA
10790919 TTCC
1 TTCC
10790923 CATTCAGAAA
Statistics
Matches: 2024, Mismatches: 145, Indels: 14
0.93 0.07 0.01
Matches are distributed among these distances:
541 392 0.19
542 224 0.11
543 388 0.19
544 1018 0.50
545 2 0.00
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.30
Consensus pattern (543 bp):
TTCCGTTTCTTGAATTAATTTCGGCCCGATCATTCTTCTTTCACTCAATTTCATCCAACAAACAA
GTTATCGACACCTACGACCATATAAGGCTTCATACGGAGCCATTTGAATACTCGATTGAAAACTA
TTGTTGTATACAAATTCGGCCAAAGGTAAGTAACGCTCCCAACCTGATTCAAAATCAATAACACA
AGTACGAAGCATGTCTTCCAAAATCTGAATAACATGCTCAGATTGTCCATCAGTCTGCTGGTGAA
AAGCTGTGCTAAAATTAAGTCGCGTACCAAGAGATTCGTGCAACTGTTTCCAAAATCTCGAAGTG
AACCGCGGATCTCGATCAGAAATTATTAACATAGGGACACCGTGCAATCTTACTATTTCTTAAAT
ATAAACTTCAGCAAGCTTTTGAAGTGACCAATTTGTCCTGGCTACAATGAAATGAGCCGATTTCG
TAAGTCGATCAACAATCACCCATACAGCATTTTTCTTACTTGCCGATAAAGGTAACCCTGTTACA
AAATCCATTGTGATACAATCCCA
Found at i:10796043 original size:19 final size:20
Alignment explanation
Indices: 10796006--10796046 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
10795996 TACAACACGA
*
10796006 TTCAATTTCATATTGAATAT
1 TTCAATTTCATATTCAATAT
*
10796026 TTCAATTT-TTATTCAATAT
1 TTCAATTTCATATTCAATAT
10796045 TT
1 TT
10796047 GCCTAAATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.32, C:0.10, G:0.02, T:0.56
Consensus pattern (20 bp):
TTCAATTTCATATTCAATAT
Found at i:10799595 original size:16 final size:16
Alignment explanation
Indices: 10799574--10799611 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
10799564 TGAATTATAA
10799574 TCTAATCCAATACACC
1 TCTAATCCAATACACC
10799590 TCTAATCCAATACACC
1 TCTAATCCAATACACC
*
10799606 TTTAAT
1 TCTAAT
10799612 TATCATATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.37, C:0.32, G:0.00, T:0.32
Consensus pattern (16 bp):
TCTAATCCAATACACC
Found at i:10800976 original size:21 final size:21
Alignment explanation
Indices: 10800950--10800989 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
10800940 AATAAATACC
*
10800950 AAAAAATTATTTTAAAAATTA
1 AAAAAAGTATTTTAAAAATTA
10800971 AAAAAAGTATTTTAAAAAT
1 AAAAAAGTATTTTAAAAAT
10800990 ATTTTAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (21 bp):
AAAAAAGTATTTTAAAAATTA
Found at i:10800992 original size:11 final size:11
Alignment explanation
Indices: 10800951--10801079 Score: 75
Period size: 11 Copynumber: 12.4 Consensus size: 11
10800941 ATAAATACCA
10800951 AAAAATTATTTT
1 AAAAA-TATTTT
**
10800963 -AAAA-ATTAA
1 AAAAATATTTT
10800972 AAAAAGTATTTT
1 AAAAA-TATTTT
10800984 AAAAATATTTT
1 AAAAATATTTT
10800995 AAAAATA----
1 AAAAATATTTT
*
10801002 AAAAA-ATTTA
1 AAAAATATTTT
10801012 AAAAAGTATTTT
1 AAAAA-TATTTT
10801024 AAAAATATTTT
1 AAAAATATTTT
10801035 --AAA-A--TT
1 AAAAATATTTT
* **
10801041 AACAAATAATAA
1 AA-AAATATTTT
10801053 AAAAAGTATTTT
1 AAAAA-TATTTT
10801065 AAAAATATTTT
1 AAAAATATTTT
10801076 AAAA
1 AAAA
10801080 TTAAAAAATT
Statistics
Matches: 91, Mismatches: 10, Indels: 33
0.68 0.07 0.25
Matches are distributed among these distances:
6 3 0.03
7 5 0.05
8 1 0.01
9 9 0.10
10 10 0.11
11 36 0.40
12 27 0.30
ACGTcount: A:0.61, C:0.01, G:0.02, T:0.36
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:10801015 original size:40 final size:40
Alignment explanation
Indices: 10800963--10801096 Score: 207
Period size: 40 Copynumber: 3.3 Consensus size: 40
10800953 AAATTATTTT
10800963 AAAAATTAAAAAAAGTATTTTAAAAATATTTTAAAAATAA
1 AAAAATTAAAAAAAGTATTTTAAAAATATTTTAAAAATAA
* *
10801003 AAAAATTTAAAAAAGTATTTTAAAAATATTTTAAAATTAA
1 AAAAATTAAAAAAAGTATTTTAAAAATATTTTAAAAATAA
*
10801043 CAAATAA-TAAAAAAAGTATTTTAAAAATATTTTAAAATTAA
1 -AAA-AATTAAAAAAAGTATTTTAAAAATATTTTAAAAATAA
*
10801084 AAAATTTAAAAAA
1 AAAAATTAAAAAA
10801097 TAAATATATT
Statistics
Matches: 87, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
39 1 0.01
40 48 0.55
41 36 0.41
42 2 0.02
ACGTcount: A:0.63, C:0.01, G:0.02, T:0.34
Consensus pattern (40 bp):
AAAAATTAAAAAAAGTATTTTAAAAATATTTTAAAAATAA
Found at i:10801016 original size:17 final size:17
Alignment explanation
Indices: 10800983--10801016 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
10800973 AAAAGTATTT
* *
10800983 TAAAAATATTTTAAAAA
1 TAAAAAAATTTAAAAAA
10801000 TAAAAAAATTTAAAAAA
1 TAAAAAAATTTAAAAAA
10801017 GTATTTTAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAAAAATTTAAAAAA
Found at i:10801056 original size:41 final size:40
Alignment explanation
Indices: 10800961--10801086 Score: 195
Period size: 41 Copynumber: 3.2 Consensus size: 40
10800951 AAAAATTATT
10800961 TTAAAAAT--TAAAAAAAGTATTTTAAAAATATTTTAAAA
1 TTAAAAATAATAAAAAAAGTATTTTAAAAATATTTTAAAA
* *
10800999 ATAAAAA-AATTTAAAAAAGTATTTTAAAAATATTTTAAAA
1 TTAAAAATAA-TAAAAAAAGTATTTTAAAAATATTTTAAAA
10801039 TTAACAAATAATAAAAAAAGTATTTTAAAAATATTTTAAAA
1 TTAA-AAATAATAAAAAAAGTATTTTAAAAATATTTTAAAA
10801080 TTAAAAA
1 TTAAAAA
10801087 ATTTAAAAAA
Statistics
Matches: 79, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
38 6 0.08
40 35 0.44
41 36 0.46
42 2 0.03
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.35
Consensus pattern (40 bp):
TTAAAAATAATAAAAAAAGTATTTTAAAAATATTTTAAAA
Found at i:10801090 original size:16 final size:17
Alignment explanation
Indices: 10801063--10801108 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
10801053 AAAAAGTATT
*
10801063 TTAAAAATATTTTAAAA
1 TTAAAAATATTTAAAAA
10801080 TTAAAAA-ATTTAAAAA
1 TTAAAAATATTTAAAAA
* *
10801096 ATAAATATATTTA
1 TTAAAAATATTTA
10801109 TTATATCGGG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 13 0.52
17 12 0.48
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
TTAAAAATATTTAAAAA
Found at i:10811082 original size:16 final size:16
Alignment explanation
Indices: 10811061--10811112 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
10811051 TTTGGTTCGC
*
10811061 TGTATTAGATTAGAGG
1 TGTATTGGATTAGAGG
10811077 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
10811093 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
10811109 TGTA
1 TGTA
10811113 ATAGCAAATC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.31, C:0.00, G:0.35, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:10811329 original size:18 final size:17
Alignment explanation
Indices: 10811308--10811342 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
10811298 TTATTATTAA
*
10811308 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
10811326 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
10811343 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:10811395 original size:156 final size:145
Alignment explanation
Indices: 10811196--10811499 Score: 455
Period size: 156 Copynumber: 2.0 Consensus size: 145
10811186 TAGAATACTC
* *
10811196 TTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTAATAAGATTATTAT
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTAATAAGATTATTAA
*
10811261 TATCAATAATAAATAAGTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAAT
66 TATCAATAATAAATAA-TTAATCATATTT--A-A-AA-TATTATT--ATATATTATAATT-AAA-
10811326 ATATAATTTAATAAAATTCTTAATAA
121 ATAT-ATTTAATAAAATTCTTAATAA
* *
10811352 TTAGCAGAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTATAAGATTATTAA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTAATAAGATTATTAA
*
10811417 TATCAATAATAAATAATTTATCATATTTAAAATATTATTATATATTATAATTAAAATATATTTAA
66 TATCAATAATAAATAATTAATCATATTTAAAATATTATTATATATTATAATTAAAATATATTTAA
10811482 TAAAATTCTTAATAA
131 TAAAATTCTTAATAA
10811497 TTA
1 TTA
10811500 ATATTCTTAT
Statistics
Matches: 142, Mismatches: 6, Indels: 11
0.89 0.04 0.07
Matches are distributed among these distances:
145 24 0.17
146 4 0.03
147 3 0.02
148 12 0.08
150 7 0.05
151 2 0.01
152 1 0.01
153 1 0.01
155 11 0.08
156 77 0.54
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.48
Consensus pattern (145 bp):
TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTAATAAGATTATTAA
TATCAATAATAAATAATTAATCATATTTAAAATATTATTATATATTATAATTAAAATATATTTAA
TAAAATTCTTAATAA
Found at i:10811485 original size:14 final size:16
Alignment explanation
Indices: 10811456--10811500 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
10811446 AAATATTATT
10811456 ATATATTATAATTAAA
1 ATATATTATAATTAAA
10811472 ATATATT-TAA-TAAA
1 ATATATTATAATTAAA
*
10811486 AT-TCTTAATAATTAA
1 ATATATT-ATAATTAA
10811501 TATTCTTATA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
13 3 0.12
14 6 0.24
15 6 0.24
16 10 0.40
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (16 bp):
ATATATTATAATTAAA
Found at i:10811528 original size:17 final size:15
Alignment explanation
Indices: 10811508--10811788 Score: 62
Period size: 15 Copynumber: 18.9 Consensus size: 15
10811498 TAATATTCTT
10811508 ATATAATTATCAATATA
1 ATAT-ATTAT-AATATA
*
10811525 ATATATTATATTA-A
1 ATATATTATAATATA
*
10811539 ATATATTATTATATA
1 ATATATTATAATATA
*
10811554 ATATA-TATTAATAAA
1 ATATATTA-TAATATA
*
10811569 AT-TCTTAATAAT-TA
1 ATATATT-ATAATATA
*
10811583 ATAT-TTAT-AT-GA
1 ATATATTATAATATA
* *
10811595 ATTTACTA-AATCATA
1 ATATATTATAAT-ATA
* *
10811610 ATATATGATACTATAAA
1 ATATATTATA--ATATA
* *
10811627 AAAAATT-TAA-ATA
1 ATATATTATAATATA
10811640 ATTAATATTA-AATATA
1 A-T-ATATTATAATATA
* *
10811656 TTA-ATTAAAATATA
1 ATATATTATAATATA
* * * *
10811670 TGATTTAATAAAATTTA
1 --ATATATTATAATATA
*
10811687 AAATAATTATAATATA
1 ATAT-ATTATAATATA
*
10811703 ATTATATT-TTATATA
1 A-TATATTATAATATA
*
10811718 ATTTA-TA-AATATA
1 ATATATTATAATATA
* *
10811731 ATTATAATATAATTTA
1 A-TATATTATAATATA
*
10811747 AAATA-TA-AAT-TA
1 ATATATTATAATATA
10811759 A-ATAATTATTAATATA
1 ATAT-ATTA-TAATATA
10811775 AT-TATATATAATAT
1 ATATAT-TATAATAT
10811789 TATAATAATA
Statistics
Matches: 193, Mismatches: 38, Indels: 68
0.65 0.13 0.23
Matches are distributed among these distances:
11 2 0.01
12 10 0.05
13 25 0.13
14 36 0.19
15 60 0.31
16 37 0.19
17 21 0.11
18 2 0.01
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.44
Consensus pattern (15 bp):
ATATATTATAATATA
Found at i:10811541 original size:14 final size:16
Alignment explanation
Indices: 10811520--10811563 Score: 58
Period size: 14 Copynumber: 2.9 Consensus size: 16
10811510 ATAATTATCA
10811520 ATAT-AATATATTA-T
1 ATATAAATATATTATT
10811534 AT-TAAATATATTATT
1 ATATAAATATATTATT
10811549 ATATAATATATATTA
1 ATATAA-ATATATTA
10811564 ATAAAATTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
13 1 0.04
14 11 0.42
15 3 0.12
16 3 0.12
17 8 0.31
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
ATATAAATATATTATT
Found at i:10811561 original size:19 final size:18
Alignment explanation
Indices: 10811507--10811561 Score: 57
Period size: 17 Copynumber: 3.3 Consensus size: 18
10811497 TTAATATTCT
*
10811507 TATATA-ATTAT-CAATA
1 TATATATATTATATAATA
10811523 TA-ATATATTATATTAA-A
1 TATATATATTATA-TAATA
10811540 TATAT-TATTATATAATA
1 TATATATATTATATAATA
10811557 TATAT
1 TATAT
10811562 TAATAAAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
15 3 0.09
16 10 0.30
17 16 0.48
18 4 0.12
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (18 bp):
TATATATATTATATAATA
Found at i:10811584 original size:29 final size:29
Alignment explanation
Indices: 10811459--10811586 Score: 92
Period size: 30 Copynumber: 4.6 Consensus size: 29
10811449 TATTATTATA
*
10811459 TATT-ATAATTAAAATATATTTAATAAAAT
1 TATTAATAATTAATATATA-TTAATAAAAT
* * *
10811488 TCTTAATAATTAATAT-TCTT-ATATAAT
1 TATTAATAATTAATATATATTAATAAAAT
* *
10811515 TATCAAT-A-T-A-ATATATTATATTAAAT
1 TATTAATAATTAATATATATTA-ATAAAAT
*
10811541 ATATT-ATTATATAATATATATTAATAAAAT
1 -TATTAATAAT-TAATATATATTAATAAAAT
*
10811571 TCTTAATAATTAATAT
1 TATTAATAATTAATAT
10811587 TTATATGAAT
Statistics
Matches: 75, Mismatches: 13, Indels: 22
0.68 0.12 0.20
Matches are distributed among these distances:
23 2 0.03
24 4 0.05
25 1 0.01
26 8 0.11
27 15 0.20
28 2 0.03
29 14 0.19
30 21 0.28
31 8 0.11
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (29 bp):
TATTAATAATTAATATATATTAATAAAAT
Found at i:10811652 original size:14 final size:15
Alignment explanation
Indices: 10811633--10811670 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
10811623 TAAAAAAAAT
10811633 TTAAATA-ATTAATA
1 TTAAATATATTAATA
10811647 TTAAATATATTAAT-
1 TTAAATATATTAATA
*
10811661 TAAAATATAT
1 TTAAATATAT
10811671 GATTTAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 16 0.73
15 6 0.27
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATATTAATA
Found at i:10811704 original size:26 final size:28
Alignment explanation
Indices: 10811675--10811732 Score: 66
Period size: 26 Copynumber: 2.1 Consensus size: 28
10811665 ATATATGATT
10811675 TAATAAAATTTAAAATAA-TTAT-AATA
1 TAATAAAATTTAAAATAATTTATAAATA
* * * *
10811701 TAATTATATTTTATATAATTTATAAATA
1 TAATAAAATTTAAAATAATTTATAAATA
10811729 TAAT
1 TAAT
10811733 TATAATATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 14 0.54
27 4 0.15
28 8 0.31
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (28 bp):
TAATAAAATTTAAAATAATTTATAAATA
Found at i:10811745 original size:24 final size:24
Alignment explanation
Indices: 10811713--10811801 Score: 100
Period size: 24 Copynumber: 3.9 Consensus size: 24
10811703 ATTATATTTT
10811713 ATATAATTTATAAATATAATTATA
1 ATATAATTTATAAATATAATTATA
*
10811737 ATATAATTTA-AAATATAAAT-TA
1 ATATAATTTATAAATATAATTATA
*
10811759 A-ATAA-TTATTAATATAATTAT-
1 ATATAATTTATAAATATAATTATA
10811780 ATATAATATTAT-AATAATAATT
1 ATATAAT-TTATAAAT-ATAATT
10811802 CTTAATAATA
Statistics
Matches: 56, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
20 3 0.05
21 13 0.23
22 8 0.14
23 12 0.21
24 20 0.36
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (24 bp):
ATATAATTTATAAATATAATTATA
Found at i:10811764 original size:60 final size:59
Alignment explanation
Indices: 10811575--10811767 Score: 150
Period size: 61 Copynumber: 3.2 Consensus size: 59
10811565 TAAAATTCTT
* *
10811575 AATAATTA-ATATTTATATGAATTTACTAAATCATAA-TAT-ATGATACTATAAAAA-AAATTTA
1 AATAATTATAT-TTTATAT-AATTTA-TAAAT-ATAATTATAAT-ATAATTTAAAAATAAA-TTA
* * *
10811636 AATAATTAATATTAAATATATTAA-TTA-AAATATATGATT-TAATAAAATTT-AAAATAATTAT
1 AATAATT-ATATT--TTATA-TAATTTATAAATATA--ATTATAATATAATTTAAAAATAAAT-T
10811697 A
59 A
10811698 ATATAATTATATTTTATATAATTTATAAATATAATTATAATATAATTTAAAATATAAATTA
1 A-ATAATTATATTTTATATAATTTATAAATATAATTATAATATAATTTAAAA-ATAAATTA
10811759 AATAATTAT
1 AATAATTAT
10811768 TAATATAATT
Statistics
Matches: 107, Mismatches: 8, Indels: 35
0.71 0.05 0.23
Matches are distributed among these distances:
59 6 0.06
60 28 0.26
61 29 0.27
62 23 0.21
63 14 0.13
64 6 0.06
65 1 0.01
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (59 bp):
AATAATTATATTTTATATAATTTATAAATATAATTATAATATAATTTAAAAATAAATTA
Found at i:10811796 original size:33 final size:33
Alignment explanation
Indices: 10811692--10811837 Score: 107
Period size: 33 Copynumber: 4.5 Consensus size: 33
10811682 ATTTAAAATA
10811692 ATTATAATATAATTAT-AT-T--T-TATATAAT
1 ATTATAATATAATTATAATATAATATATATAAT
*
10811720 -TTATAAATATAATTATAATATAAT-T-TAAAAT
1 ATTAT-AATATAATTATAATATAATATATATAAT
*
10811751 ATAAATTAA-ATAATTATTAATATAATTATATATAAT
1 AT-TA-TAATATAATTA-TAATATAA-TATATATAAT
* *
10811787 ATTATAATAATAATTCTTA-ATAATATATATAAT
1 ATTATAAT-ATAATTATAATATAATATATATAAT
*
10811820 -TTATAAAATAATATATAA
1 ATTATAATATAAT-TATAA
10811838 AAAAAAAAAA
Statistics
Matches: 94, Mismatches: 9, Indels: 26
0.73 0.07 0.20
Matches are distributed among these distances:
27 4 0.04
28 11 0.12
29 2 0.02
30 1 0.01
31 10 0.11
32 19 0.20
33 21 0.22
34 9 0.10
35 4 0.04
36 13 0.14
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (33 bp):
ATTATAATATAATTATAATATAATATATATAAT
Found at i:10811842 original size:1 final size:1
Alignment explanation
Indices: 10811836--10811911 Score: 80
Period size: 1 Copynumber: 76.0 Consensus size: 1
10811826 AATAATATAT
* * * * * * *
10811836 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAATAAAAAAAATAATAAATATAAAAAAAAAAATA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
10811901 AATAAAAAAAA
1 AAAAAAAAAAA
10811912 TAATAAAATT
Statistics
Matches: 59, Mismatches: 16, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 59 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (1 bp):
A
Found at i:10811892 original size:46 final size:47
Alignment explanation
Indices: 10811824--10811919 Score: 140
Period size: 46 Copynumber: 2.1 Consensus size: 47
10811814 TATAATTTAT
*
10811824 AAAATAATATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAATA
1 AAAAAAATATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAATA
* * * *
10811871 AAAAAAATA-ATAAATATAAAAAAAAAAATAAATAAAAAAAATAATA
1 AAAAAAATATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAATA
10811917 AAA
1 AAA
10811920 TTCTATAATA
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
46 36 0.82
47 8 0.18
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (47 bp):
AAAAAAATATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAATA
Found at i:10811912 original size:34 final size:34
Alignment explanation
Indices: 10811834--10811919 Score: 126
Period size: 34 Copynumber: 2.6 Consensus size: 34
10811824 AAAATAATAT
10811834 ATAAA-AAAAAAAA-AA-AAAAAAAAAAAAAAAA
1 ATAAATAAAAAAAATAATAAAAAAAAAAAAAAAA
* *
10811865 AT-AATAAAAAAAATAATAAATATAAAAAAAAAA
1 ATAAATAAAAAAAATAATAAAAAAAAAAAAAAAA
10811898 ATAAATAAAAAAAATAATAAAA
1 ATAAATAAAAAAAATAATAAAA
10811920 TTCTATAATA
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
30 2 0.04
31 10 0.21
32 2 0.04
33 16 0.33
34 18 0.38
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (34 bp):
ATAAATAAAAAAAATAATAAAAAAAAAAAAAAAA
Found at i:10811916 original size:12 final size:12
Alignment explanation
Indices: 10811824--10811919 Score: 94
Period size: 12 Copynumber: 8.2 Consensus size: 12
10811814 TATAATTTAT
*
10811824 AAAATAATATATA
1 AAAAAAATA-ATA
10811837 AAAAAAA-AA-A
1 AAAAAAATAATA
* *
10811847 AAAAAAAAAAAA
1 AAAAAAATAATA
10811859 AAAAAAATAATA
1 AAAAAAATAATA
10811871 AAAAAAATAAT-
1 AAAAAAATAATA
* *
10811882 --AAATATAAAA
1 AAAAAAATAATA
10811892 AAAAAAATAAATA
1 AAAAAAAT-AATA
10811905 AAAAAAATAATA
1 AAAAAAATAATA
10811917 AAA
1 AAA
10811920 TTCTATAATA
Statistics
Matches: 70, Mismatches: 7, Indels: 13
0.78 0.08 0.14
Matches are distributed among these distances:
9 7 0.10
10 8 0.11
11 3 0.04
12 35 0.50
13 17 0.24
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (12 bp):
AAAAAAATAATA
Found at i:10813439 original size:11 final size:11
Alignment explanation
Indices: 10813425--10813451 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
10813415 AAAAATCAAT
10813425 ACAAAAGTTTC
1 ACAAAAGTTTC
10813436 ACAAAAGTTTC
1 ACAAAAGTTTC
10813447 ACAAA
1 ACAAA
10813452 CTAATTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.52, C:0.19, G:0.07, T:0.22
Consensus pattern (11 bp):
ACAAAAGTTTC
Found at i:10815669 original size:13 final size:13
Alignment explanation
Indices: 10815651--10815675 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10815641 AACTAATTTG
10815651 TATGTACTCTTTA
1 TATGTACTCTTTA
10815664 TATGTACTCTTT
1 TATGTACTCTTT
10815676 CACTAATAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.16, G:0.08, T:0.56
Consensus pattern (13 bp):
TATGTACTCTTTA
Found at i:10819697 original size:17 final size:18
Alignment explanation
Indices: 10819675--10819716 Score: 54
Period size: 16 Copynumber: 2.5 Consensus size: 18
10819665 TAGCTTTGTA
10819675 ATATTTTTAAAAA-AAAT
1 ATATTTTTAAAAACAAAT
*
10819692 ATA-TTTTAAAAACACAT
1 ATATTTTTAAAAACAAAT
10819709 -TATTTTTA
1 ATATTTTTA
10819717 TTTTATTTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 11 0.50
17 11 0.50
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (18 bp):
ATATTTTTAAAAACAAAT
Found at i:10830634 original size:29 final size:29
Alignment explanation
Indices: 10830565--10830632 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
10830555 AAAATGTACT
* * *
10830565 AACTTTTAAAGGGCCTAAGTTTTTTTTTT
1 AACTTTTAAAGGGCCAAAATTTTTTTTTC
* *
10830594 AGCTTTTAAAGGTCCAAAATTTTTTTTATC
1 AACTTTTAAAGGGCCAAAATTTTTTTT-TC
10830624 AACTTTTAA
1 AACTTTTAA
10830633 GGAATCTAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
29 23 0.72
30 9 0.28
ACGTcount: A:0.29, C:0.12, G:0.10, T:0.49
Consensus pattern (29 bp):
AACTTTTAAAGGGCCAAAATTTTTTTTTC
Found at i:10834149 original size:11 final size:11
Alignment explanation
Indices: 10834133--10834162 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
10834123 TTCCCTTTAA
10834133 ATTTTTTATTT
1 ATTTTTTATTT
*
10834144 ATTTTTAATTT
1 ATTTTTTATTT
10834155 ATTTTTTA
1 ATTTTTTA
10834163 AAAAGCAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (11 bp):
ATTTTTTATTT
Found at i:10846482 original size:85 final size:85
Alignment explanation
Indices: 10846304--10846654 Score: 352
Period size: 85 Copynumber: 4.0 Consensus size: 85
10846294 AAACAGGCTA
* * * *
10846304 TTAGCGGCGCT-TTTTCACATAAACGTCGCTAAAGAGCATGACCTCTTTAGCGGTGCTTATATCA
1 TTAGCGGCGCTATTTT-AC--AAACGCCGCTAAAGAACATGA-C-CTTTAGCGGCGCTTTTATCA
10846368 CAAACGCCGCTAAAGATCATGTTCT
61 CAAACGCCGCTAAAGATCATGTTCT
* * *
10846393 TTAGCGGCGCTAATTTTTCAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTT-TCATACA
1 TTAGCGGCGCT-ATTTTACAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTATCACAAA
* * *
10846457 TGCCGCTAAAGGTGATGTTCT
65 CGCCGCTAAAGATCATGTTCT
* *** * *
10846478 TTAGCGGCGCTATTGTTACAAACGCCGCTAAATG-TCATGTTTTTTAGCGGCGCTTTTCACCATA
1 TTAGCGGCGCTATT-TTACAAACGCCGCTAAA-GAACATGACCTTTAGCGGCGCTTTT-ATCACA
* *
10846542 AACGCCGCTAAAGACCATG-ACAT
63 AACGCCGCTAAAGATCATGTTC-T
* *
10846565 TTAGCGGCGCT-TTTTACCACAATCACCGCTAAAGAACATCACCTTTAGCGGCGCTTTTATCACA
1 TTAGCGGCGCTATTTTA-CA-AA-CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTATCACA
* *
10846629 AACGCCGCTAAAGGTAATGTTCT
63 AACGCCGCTAAAGATCATGTTCT
10846652 TTA
1 TTA
10846655 CAGTGCTTTA
Statistics
Matches: 216, Mismatches: 34, Indels: 26
0.78 0.12 0.09
Matches are distributed among these distances:
84 3 0.01
85 72 0.33
86 20 0.09
87 58 0.27
88 47 0.22
89 11 0.05
90 1 0.00
91 4 0.02
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.29
Consensus pattern (85 bp):
TTAGCGGCGCTATTTTACAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTATCACAAAC
GCCGCTAAAGATCATGTTCT
Found at i:10846568 original size:44 final size:43
Alignment explanation
Indices: 10846304--10846641 Score: 290
Period size: 43 Copynumber: 7.8 Consensus size: 43
10846294 AAACAGGCTA
* *
10846304 TTAGCGGCGCTTTT-TCACATAAACGTCGCTAAAGAGCATGACCTCT
1 TTAGCGGCGCTTTTATCAC--AAACGCCGCTAAAGATCATGA-C-CT
* * **
10846350 TTAGCGGTGCTTATATCACAAACGCCGCTAAAGATCATGTTCT
1 TTAGCGGCGCTTTTATCACAAACGCCGCTAAAGATCATGACCT
* *
10846393 TTAGCGGCGCTAATTT-T-TCAAACGCCGCTAAAGAACATGACCT
1 TTAGCGGCGCT--TTTATCACAAACGCCGCTAAAGATCATGACCT
* * * * * **
10846436 TTAGCGGCGCTTTT-TCATACATGCCGCTAAAGGTGATGTTCT
1 TTAGCGGCGCTTTTATCACAAACGCCGCTAAAGATCATGACCT
* * * ***
10846478 TTAGCGGCGCTATTGTTACAAACGCCGCTAAATG-TCATGTTTT
1 TTAGCGGCGCTTTTATCACAAACGCCGCTAAA-GATCATGACCT
* * * *
10846521 TTAGCGGCGCTTTTCACCATAAACGCCGCTAAAGACCATGACAT
1 TTAGCGGCGCTTTT-ATCACAAACGCCGCTAAAGATCATGACCT
* * * * *
10846565 TTAGCGGCGCTTTTTACCACAATCACCGCTAAAGAACATCACCT
1 TTAGCGGCGC-TTTTATCACAAACGCCGCTAAAGATCATGACCT
10846609 TTAGCGGCGCTTTTATCACAAACGCCGCTAAAG
1 TTAGCGGCGCTTTTATCACAAACGCCGCTAAAG
10846642 GTAATGTTCT
Statistics
Matches: 237, Mismatches: 46, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
41 4 0.02
42 30 0.13
43 99 0.42
44 64 0.27
45 24 0.10
46 12 0.05
47 4 0.02
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (43 bp):
TTAGCGGCGCTTTTATCACAAACGCCGCTAAAGATCATGACCT
Found at i:10846993 original size:21 final size:21
Alignment explanation
Indices: 10846965--10847014 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
10846955 TTCTGCTCTG
*
10846965 CTCTGCTTCCCTCGCTGCTGC
1 CTCTGCTTCCCACGCTGCTGC
*
10846986 CTTTGCTTCCCACGCTGCTGC
1 CTCTGCTTCCCACGCTGCTGC
10847007 CTCTGCTT
1 CTCTGCTT
10847015 TAAGTTGTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.02, C:0.44, G:0.18, T:0.36
Consensus pattern (21 bp):
CTCTGCTTCCCACGCTGCTGC
Found at i:10847082 original size:66 final size:66
Alignment explanation
Indices: 10847001--10847141 Score: 255
Period size: 66 Copynumber: 2.1 Consensus size: 66
10846991 CTTCCCACGC
*
10847001 TGCTGCCTCTGCTTTAAGTTGTAGCTGGAGTGCTTCATATTTTCTTTGAACCTCAGCTTCTCTCG
1 TGCTGCCTCTACTTTAAGTTGTAGCTGGAGTGCTTCATATTTTCTTTGAACCTCAGCTTCTCTCG
10847066 A
66 A
* *
10847067 TGTTGCCTCTACTTTAAGTTGTAGCTGGAGTGCTTCATATTTTCTTTGAACCTCAGCTTCTCTTG
1 TGCTGCCTCTACTTTAAGTTGTAGCTGGAGTGCTTCATATTTTCTTTGAACCTCAGCTTCTCTCG
10847132 A
66 A
10847133 TGCTGCCTC
1 TGCTGCCTC
10847142 CTTTTTTGAT
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 71 1.00
ACGTcount: A:0.15, C:0.24, G:0.19, T:0.42
Consensus pattern (66 bp):
TGCTGCCTCTACTTTAAGTTGTAGCTGGAGTGCTTCATATTTTCTTTGAACCTCAGCTTCTCTCG
A
Found at i:10850355 original size:14 final size:14
Alignment explanation
Indices: 10850332--10850380 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
10850322 ATAAATTATA
10850332 AACCCCTAACCCTT
1 AACCCCTAACCCTT
* *
10850346 AACCCTTAACTCTT
1 AACCCCTAACCCTT
*
10850360 AACCCCTAACACCTA
1 AACCCCTAAC-CCTT
10850375 AACCCC
1 AACCCC
10850381 AAGTACTAAC
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 21 0.72
15 8 0.28
ACGTcount: A:0.33, C:0.47, G:0.00, T:0.20
Consensus pattern (14 bp):
AACCCCTAACCCTT
Found at i:10850530 original size:14 final size:14
Alignment explanation
Indices: 10850513--10850556 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
10850503 GCACCTAAAA
10850513 CTTAAACCCTAACC
1 CTTAAACCCTAACC
* *
10850527 CTTAAACCATAATC
1 CTTAAACCCTAACC
10850541 CTTAAACCCCTAACC
1 CTTAAA-CCCTAACC
10850556 C
1 C
10850557 ATATCACTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
14 18 0.72
15 7 0.28
ACGTcount: A:0.36, C:0.41, G:0.00, T:0.23
Consensus pattern (14 bp):
CTTAAACCCTAACC
Found at i:10850548 original size:22 final size:22
Alignment explanation
Indices: 10850523--10850572 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
10850513 CTTAAACCCT
10850523 AACCCTTAAACCATAATC-CTTA
1 AACCCTTAAACCAT-ATCACTTA
* *
10850545 AACCCCTAACCCATATCACTTA
1 AACCCTTAAACCATATCACTTA
10850567 AACCCT
1 AACCCT
10850573 GAATCATAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 3 0.12
22 21 0.88
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.24
Consensus pattern (22 bp):
AACCCTTAAACCATATCACTTA
Found at i:10850617 original size:39 final size:38
Alignment explanation
Indices: 10850562--10850648 Score: 129
Period size: 39 Copynumber: 2.2 Consensus size: 38
10850552 AACCCATATC
* *
10850562 ACTTAAACCCTGAATCATAGAACATATATAAACTATAA
1 ACTTAAACCCTAAATCATAAAACATATATAAACTATAA
*
10850600 ACCTTAAACCCTAAATCATAAAACATATATAAACTCTAA
1 A-CTTAAACCCTAAATCATAAAACATATATAAACTATAA
10850639 ACTCTAAACC
1 ACT-TAAACC
10850649 TTCCTTAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
38 3 0.07
39 41 0.93
ACGTcount: A:0.49, C:0.23, G:0.02, T:0.25
Consensus pattern (38 bp):
ACTTAAACCCTAAATCATAAAACATATATAAACTATAA
Found at i:10851024 original size:114 final size:112
Alignment explanation
Indices: 10850784--10851387 Score: 438
Period size: 114 Copynumber: 5.4 Consensus size: 112
10850774 AAAAAGCACA
* * * * *
10850784 GCTAATGCTTGACTTCTACGGCGTTTTTCTA-AAAGCGCCATTAATGTGTCTAAAG-TTAAAAAA
1 GCTAATGCTTGACTTTTGCGGCG-TTTTCTAGAAAGCGCCACTAATGTCTCTAAAGCTAAAAAAA
* * * *
10850847 AAATG-TCGTCGTTCGCTTAAAAACTTCTGCGGCGC-TACCCA-AAAGGCGCC
65 AAACGAT-GTCGTTTGCTT-AAAACTTTTGCGGCGCTTA--GAGAAAGG-GCC
* *
10850897 GCTAGTGCTTGACTTTTGCGGCATTTTCTAGAAAGCGCCACTAATGTCTCTAAAGCTAAAAAATA
1 GCTAATGCTTGACTTTTGCGGCGTTTTCTAGAAAGCGCCACTAATGTCTCTAAAGCTAAAAAA-A
* *
10850962 AAACGATGTCGTTTGCTTAACACTTTTGCGGCGCGTTAGGGAAAGGGCC
65 AAACGATGTCGTTTGCTTAAAACTTTTGCGGCGC-TTAGAGAAAGGGCC
* * * *
10851011 GCTACTGCTTGACTTTTGCGGCGTTTT-TTGAAAAGGGCCACTAATGTCTCTAAAGCTTAACAAA
1 GCTAATGCTTGACTTTTGCGGCGTTTTCTAG-AAAGCGCCACTAATGTCTCTAAAGC-TAAAAAA
** * * * ***
10851075 AAAACGACATCGCTTGCTTAAAACTTTTGTGACGCTT---------TTT
64 AAAACGATGTCGTTTGCTTAAAACTTTTGCGGCGCTTAGAGAAAGGGCC
* * * *
10851115 GCTAATACTTGACTTTTTGCGACGTTTTCTAAAAAGTGCCACTAATGTCTCTAAAGCT---AAAA
1 GCTAATGCTTGAC-TTTTGCGGCGTTTTCTAGAAAGCGCCACTAATGTCTCTAAAGCTAAAAAAA
* * * *
10851177 AAACGATGTCGTTTGCTTAGAACTTTTGCAGCGCTTTTGAGAAAGTGCC
65 AAACGATGTCGTTTGCTTAAAACTTTTGCGGCGC-TTAGAGAAAGGGCC
* * * * * * * **
10851226 GCTAATACTTGACTTTTGCGGCG-TTTCTTGAAAGCACCACTAACGTCTTTGAAGCTTAACAAGT
1 GCTAATGCTTGACTTTTGCGGCGTTTTCTAGAAAGCGCCACTAATGTCTCTAAAGC-TAAAAAAA
* ** ** * * *
10851290 AAACAACATCGTTTGGCTTAACTCTTTTGCGACGCTTTTGAGAAAGCGCC
65 AAACGATGTCGTTT-GCTTAAAACTTTTGCGGCGC-TTAGAGAAAGGGCC
* * * * *
10851340 GCTAATGCTTGACTTTTGTGGCTTTTTTTA-AAGGCACCACTAATGTCT
1 GCTAATGCTTGACTTTTGCGGCGTTTTCTAGAAAGCGCCACTAATGTCT
10851388 TTGAAGCGCA
Statistics
Matches: 395, Mismatches: 69, Indels: 53
0.76 0.13 0.10
Matches are distributed among these distances:
101 31 0.08
102 2 0.01
104 12 0.03
105 37 0.09
106 1 0.00
109 25 0.06
110 10 0.03
111 13 0.03
112 7 0.02
113 58 0.15
114 166 0.42
115 30 0.08
116 3 0.01
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (112 bp):
GCTAATGCTTGACTTTTGCGGCGTTTTCTAGAAAGCGCCACTAATGTCTCTAAAGCTAAAAAAAA
AACGATGTCGTTTGCTTAAAACTTTTGCGGCGCTTAGAGAAAGGGCC
Found at i:10851326 original size:215 final size:216
Alignment explanation
Indices: 10850904--10851328 Score: 561
Period size: 215 Copynumber: 2.0 Consensus size: 216
10850894 GCCGCTAGTG
* *
10850904 CTTGACTTTTGCGGCATTTTCTAGAAAGCGCCACTAATGTCTCTAAAGCTAAAAAATAAAACGAT
1 CTTGACTTTTGCGACATTTTCTAAAAAGCGCCACTAATGTCTCTAAAGCT--AAAATAAAACGAT
* * * *
10850969 GTCGTTTGCTTAACACTTTTGCGGCGCGTTAGGGAAAGGGCCGCTACTGCTTGACTTTTGCGGCG
64 GTCGTTTGCTTAACACTTTTGCAGCGCGTTAGAGAAAGGGCCGCTAATACTTGACTTTTGCGGCG
* ** * *
10851034 TTTTTTGAAAAGGGCCACTAATGTCTCTAAAGCTTAACAAAAAAACGACATCGCTTGCTTAAAAC
129 TTTCTTGAAAAGCACCACTAACGTCTCTAAAGCTTAACAAAAAAACAACATCGCTTGCTTAAAAC
*
10851099 TTTTGTGACGCTTTTTGCTAATA
194 TTTTGCGACGCTTTTTGCTAATA
* *
10851122 CTTGACTTTTTGCGACGTTTTCTAAAAAGTGCCACTAATGTCTCTAAAGCT-AAA-AAAACGATG
1 CTTGAC-TTTTGCGACATTTTCTAAAAAGCGCCACTAATGTCTCTAAAGCTAAAATAAAACGATG
* * *
10851185 TCGTTTGCTTAGA-ACTTTTGCAGCGCTTTTGAGAAAGTGCCGCTAATACTTGACTTTTGCGGCG
65 TCGTTTGCTTA-ACACTTTTGCAGCGCGTTAGAGAAAGGGCCGCTAATACTTGACTTTTGCGGCG
* * ** * **
10851249 TTTCTTG-AAAGCACCACTAACGTCTTTGAAGCTTAACAAGTAAACAACATCGTTTGGCTTAACT
129 TTTCTTGAAAAGCACCACTAACGTCTCTAAAGCTTAACAAAAAAACAACATCGCTT-GCTTAAAA
10851313 CTTTTGCGACGCTTTT
193 CTTTTGCGACGCTTTT
10851329 GAGAAAGCGC
Statistics
Matches: 180, Mismatches: 24, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
214 39 0.22
215 91 0.51
216 4 0.02
218 6 0.03
219 40 0.22
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.33
Consensus pattern (216 bp):
CTTGACTTTTGCGACATTTTCTAAAAAGCGCCACTAATGTCTCTAAAGCTAAAATAAAACGATGT
CGTTTGCTTAACACTTTTGCAGCGCGTTAGAGAAAGGGCCGCTAATACTTGACTTTTGCGGCGTT
TCTTGAAAAGCACCACTAACGTCTCTAAAGCTTAACAAAAAAACAACATCGCTTGCTTAAAACTT
TTGCGACGCTTTTTGCTAATA
Found at i:10851391 original size:114 final size:114
Alignment explanation
Indices: 10851199--10851478 Score: 359
Period size: 114 Copynumber: 2.5 Consensus size: 114
10851189 TTGCTTAGAA
* *
10851199 CTTTTGC-AGCGCTTTTGAGAAAGTGCCGCTAATACTTGACTTTTGCGGCGTTTCTTGAAAGCAC
1 CTTTTGCGA-CGCTTTTGAGAAAGCGCCGCTAATGCTTGACTTTTGCGGCGTTTCTTGAAAGCAC
** * *
10851263 CACTAACGTCTTTGAAGCTTAACAAGTAAACAACATCGTTTGGCTTAACT
65 CACTAACGTCTTTGAAGCGCAACAAGAAAACAACATCATTTGGCTTAACT
* * *
10851313 CTTTTGCGACGCTTTTGAGAAAGCGCCGCTAATGCTTGACTTTTGTGGC-TTTTTTTAAAGGCAC
1 CTTTTGCGACGCTTTTGAGAAAGCGCCGCTAATGCTTGACTTTTGCGGCGTTTCTTGAAA-GCAC
* *
10851377 CACTAATGTCTTTGAAGCGCAACAAGAAAACGACATCATTTGGCTTAACT
65 CACTAACGTCTTTGAAGCGCAACAAGAAAACAACATCATTTGGCTTAACT
** * * * *
10851427 CTTTTGCGGTGCTTTTGGGGAAGCGCCGCTATTGCTT-ATATTTTGCGGCGTT
1 CTTTTGCGACGCTTTTGAGAAAGCGCCGCTAATGCTTGA-CTTTTGCGGCGTT
10851479 CATTTAATTT
Statistics
Matches: 144, Mismatches: 18, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
113 9 0.06
114 132 0.92
115 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.34
Consensus pattern (114 bp):
CTTTTGCGACGCTTTTGAGAAAGCGCCGCTAATGCTTGACTTTTGCGGCGTTTCTTGAAAGCACC
ACTAACGTCTTTGAAGCGCAACAAGAAAACAACATCATTTGGCTTAACT
Found at i:10854269 original size:27 final size:28
Alignment explanation
Indices: 10854232--10854285 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 28
10854222 CTGAAATGTG
10854232 AAGGGGATTGCTAAGTGCTGATTCCCCC
1 AAGGGGATTGCTAAGTGCTGATTCCCCC
**
10854260 AAGGGG-TTGCTGTGTGCTGATTCCCC
1 AAGGGGATTGCTAAGTGCTGATTCCCC
10854286 GATTCATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 18 0.75
28 6 0.25
ACGTcount: A:0.17, C:0.24, G:0.31, T:0.28
Consensus pattern (28 bp):
AAGGGGATTGCTAAGTGCTGATTCCCCC
Found at i:10854284 original size:102 final size:102
Alignment explanation
Indices: 10854158--10854627 Score: 832
Period size: 102 Copynumber: 4.6 Consensus size: 102
10854148 ATTGCATATA
10854158 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATC
1 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATC
*
10854223 TGAAATGTGAAGGGGATTGCTAAGTGCTGATTCCCCC
66 TGAAATGTGAAGGGGGTTGCTAAGTGCTGATTCCCCC
10854260 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATC
1 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATC
10854325 TGAAATGTGAAGGGGGTTGCTAAGTGCTGATTCCCCC
66 TGAAATGTGAAGGGGGTTGCTAAGTGCTGATTCCCCC
* *
10854362 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATT
1 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATC
*
10854427 TTAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCCC
66 TGAAATGTG-AAGGGGGTTGCTAAGTGCTGATTCCCCC
* ** *
10854465 GAGGGGTTGCTAAGTGCTGATTCCCCTATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATC
1 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATC
*
10854530 TGAAATGTGAAGGGGGTTGCTAAGTGCTGATTTCCCC
66 TGAAATGTGAAGGGGGTTGCTAAGTGCTGATTCCCCC
* *
10854567 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCGGAATCCACCG
1 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCG
10854628 ATAACGGTTA
Statistics
Matches: 349, Mismatches: 18, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
102 254 0.73
103 95 0.27
ACGTcount: A:0.18, C:0.21, G:0.30, T:0.31
Consensus pattern (102 bp):
AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATC
TGAAATGTGAAGGGGGTTGCTAAGTGCTGATTCCCCC
Found at i:10854517 original size:205 final size:204
Alignment explanation
Indices: 10854158--10854627 Score: 832
Period size: 205 Copynumber: 2.3 Consensus size: 204
10854148 ATTGCATATA
10854158 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATC
1 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATC
**
10854223 TGAAATGTGAAGGGGATTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTGTGTGCTGATTCCCCGA
66 TGAAATGTGAAGGGGATTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGA
10854288 TTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATCTGAAATGTGAAGGGGGTTGCTAAGTGCT
131 TTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATCTGAAATGTGAAGGGGGTTGCTAAGTGCT
10854353 GATTCCCCC
196 GATTCCCCC
* *
10854362 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATT
1 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATC
* * * *
10854427 TTAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTCCCCT
66 TGAAATGTG-AAGGGGATTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCG
10854492 ATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATCTGAAATGTGAAGGGGGTTGCTAAGTGC
130 ATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATCTGAAATGTGAAGGGGGTTGCTAAGTGC
*
10854557 TGATTTCCCC
195 TGATTCCCCC
* *
10854567 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCGGAATCCACCG
1 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCG
10854628 ATAACGGTTA
Statistics
Matches: 254, Mismatches: 11, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
204 71 0.28
205 183 0.72
ACGTcount: A:0.18, C:0.21, G:0.30, T:0.31
Consensus pattern (204 bp):
AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATC
TGAAATGTGAAGGGGATTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGA
TTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATCTGAAATGTGAAGGGGGTTGCTAAGTGCT
GATTCCCCC
Found at i:10854572 original size:27 final size:26
Alignment explanation
Indices: 10854542--10854592 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
10854532 AAATGTGAAG
10854542 GGGGTTGCTAAGTGCTGATTTCCCCAA
1 GGGGTTGCTAAGTGCTGA-TTCCCCAA
**
10854569 GGGGTTGCTGTGTGCTGATTCCCC
1 GGGGTTGCTAAGTGCTGATTCCCC
10854593 GATTCATTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 6 0.27
27 16 0.73
ACGTcount: A:0.12, C:0.24, G:0.33, T:0.31
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCAA
Found at i:10862411 original size:29 final size:29
Alignment explanation
Indices: 10862369--10862427 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
10862359 CTGTACTTAT
*
10862369 TGGCTAAACCAAAAATTCTGAAAATTTTA
1 TGGCTAAACCAAAAATTCTAAAAATTTTA
10862398 TGGCTAAACCAAAAATTCTAAAAATTTTA
1 TGGCTAAACCAAAAATTCTAAAAATTTTA
10862427 T
1 T
10862428 AGTAAGAAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.46, C:0.14, G:0.08, T:0.32
Consensus pattern (29 bp):
TGGCTAAACCAAAAATTCTAAAAATTTTA
Found at i:10871558 original size:15 final size:15
Alignment explanation
Indices: 10871533--10871567 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
10871523 GACTCTATTT
*
10871533 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
10871547 TAATTAATATTAAGA
1 TAATTAATATTAAGA
10871562 TAATTA
1 TAATTA
10871568 TTAAGGATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:10884134 original size:47 final size:48
Alignment explanation
Indices: 10884082--10884176 Score: 149
Period size: 49 Copynumber: 2.0 Consensus size: 48
10884072 ATGCCAAAAT
*
10884082 TATTTAAGCAACT-A-AAAATTCAAAACAACTTAATTAATTAAACTAAG
1 TATTTAAGCAACTAAGAAAATT-AAAACAACTGAATTAATTAAACTAAG
10884129 TATTTAAGCAACTAAAGAAAATTAAAACAACTGAATTAATTAAACTAA
1 TATTTAAGCAACT-AAGAAAATTAAAACAACTGAATTAATTAAACTAA
10884177 ACATATTAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
47 13 0.30
49 25 0.57
50 6 0.14
ACGTcount: A:0.55, C:0.12, G:0.05, T:0.28
Consensus pattern (48 bp):
TATTTAAGCAACTAAGAAAATTAAAACAACTGAATTAATTAAACTAAG
Found at i:10900466 original size:27 final size:28
Alignment explanation
Indices: 10900404--10900466 Score: 65
Period size: 28 Copynumber: 2.3 Consensus size: 28
10900394 CTTATTTTCC
* * **
10900404 TAAATTTTTAAAAAATTAGTCTATTTTG
1 TAAAATTTTAAAAAAATAAACTATTTTG
* *
10900432 TAATATTTTAAAAAAATAAACTTTTTTG
1 TAAAATTTTAAAAAAATAAACTATTTTG
10900460 -AAAATTT
1 TAAAATTT
10900467 AGTCCGAACA
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
27 6 0.21
28 22 0.79
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (28 bp):
TAAAATTTTAAAAAAATAAACTATTTTG
Found at i:10901147 original size:17 final size:18
Alignment explanation
Indices: 10901126--10901164 Score: 55
Period size: 16 Copynumber: 2.3 Consensus size: 18
10901116 TTAGTTATTC
*
10901126 TAAAAGATT-AAAAAAA-
1 TAAAAAATTCAAAAAAAT
10901142 TAAAAAATTCAAAAAAAT
1 TAAAAAATTCAAAAAAAT
10901160 TAAAA
1 TAAAA
10901165 TTCAAAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 8 0.40
17 7 0.35
18 5 0.25
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (18 bp):
TAAAAAATTCAAAAAAAT
Found at i:10901892 original size:33 final size:33
Alignment explanation
Indices: 10901853--10901915 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
10901843 TTATTATATA
*
10901853 AATTTGT-AAATG-TTAGTTTATTATTTATTACTT
1 AATTTGTGAAA-GATTA-TTTATTATGTATTACTT
10901886 AATTTGTGAAAGATTATTTATTATGTATTA
1 AATTTGTGAAAGATTATTTATTATGTATTA
10901916 TATATGTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 21 0.78
34 6 0.22
ACGTcount: A:0.33, C:0.02, G:0.11, T:0.54
Consensus pattern (33 bp):
AATTTGTGAAAGATTATTTATTATGTATTACTT
Found at i:10906942 original size:16 final size:18
Alignment explanation
Indices: 10906915--10906947 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
10906905 TAGAATTGGG
10906915 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
10906932 TTGAG-AAATTAATTTA
1 TTGAGAAAATTAATTTA
10906948 GTTAATTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.42
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:10909555 original size:15 final size:15
Alignment explanation
Indices: 10909533--10909567 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
10909523 CTAAATTTTG
10909533 AAAATTTAAAA-TAA
1 AAAATTTAAAATTAA
10909547 AAAAGTTTAAAATTAA
1 AAAA-TTTAAAATTAA
10909563 AAAAT
1 AAAAT
10909568 AGACTAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 4 0.21
15 8 0.42
16 7 0.37
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.29
Consensus pattern (15 bp):
AAAATTTAAAATTAA
Found at i:10911309 original size:3 final size:3
Alignment explanation
Indices: 10911236--10911295 Score: 111
Period size: 3 Copynumber: 20.0 Consensus size: 3
10911226 AGTTAGTAAG
*
10911236 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAG TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
10911284 TAA TAA TAA TAA
1 TAA TAA TAA TAA
10911296 AAGGTTAATA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:10912581 original size:5 final size:5
Alignment explanation
Indices: 10912573--10912598 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
10912563 TGTTTAATTG
10912573 TTTAT TTTAT TTTAT TTTAT TTTAT T
1 TTTAT TTTAT TTTAT TTTAT TTTAT T
10912599 AAAGGGCCGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:10916058 original size:11 final size:11
Alignment explanation
Indices: 10916044--10916084 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
10916034 TGTTTTCTCC
10916044 CTATTTTGCTA
1 CTATTTTGCTA
*
10916055 CTATTTTTCTA
1 CTATTTTGCTA
* *
10916066 TTATGTTGCTA
1 CTATTTTGCTA
10916077 CTATTTTG
1 CTATTTTG
10916085 TTGTTATTAT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.17, C:0.15, G:0.10, T:0.59
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:10916155 original size:30 final size:30
Alignment explanation
Indices: 10916121--10916183 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
10916111 ACTTATTTTA
*
10916121 TTGTTAATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
*
10916151 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
10916181 TTG
1 TTG
10916184 CTTGTTGAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.25, C:0.03, G:0.14, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:10916656 original size:28 final size:26
Alignment explanation
Indices: 10916616--10916667 Score: 77
Period size: 28 Copynumber: 1.9 Consensus size: 26
10916606 TTTAATAAAT
10916616 TTAGATATCAAATTGAACCAAAAAAAAC
1 TTAGATATCAAATTGAA--AAAAAAAAC
*
10916644 TTAGGTATCAAATTGAAAAAAAAA
1 TTAGATATCAAATTGAAAAAAAAA
10916668 TCAAGTTCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 7 0.30
28 16 0.70
ACGTcount: A:0.58, C:0.10, G:0.10, T:0.23
Consensus pattern (26 bp):
TTAGATATCAAATTGAAAAAAAAAAC
Found at i:10923793 original size:12 final size:12
Alignment explanation
Indices: 10923766--10923804 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
10923756 ATGCAAATGA
10923766 AATAATTTAA-T
1 AATAATTTAATT
10923777 AATAATTTAATT
1 AATAATTTAATT
10923789 AATAATATT-ATT
1 AATAAT-TTAATT
10923801 AATA
1 AATA
10923805 TAACAATTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
11 10 0.38
12 14 0.54
13 2 0.08
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (12 bp):
AATAATTTAATT
Found at i:10924975 original size:76 final size:76
Alignment explanation
Indices: 10924863--10925007 Score: 184
Period size: 76 Copynumber: 1.9 Consensus size: 76
10924853 TGGAATGTCC
* * * *
10924863 TGAAGTAAGTAGATTGTGCCCAACGCTCATCAGTTTAACCGAAGTAGTAATTGTG-CTCAACACT
1 TGAAGCAAGTAGATTGCGCCCAACGCTCATCAGTTTAACCAAAGTAATAATTGTGTC-CAACACT
10924927 CATCGAAATGTT
65 CATCGAAATGTT
* ** ** *
10924939 TGAAGCAAGTAGATTGCGCGCAACGCTCATTGGTTTAATTAAAGTAATAATTGTGTCCAGCACTC
1 TGAAGCAAGTAGATTGCGCCCAACGCTCATCAGTTTAACCAAAGTAATAATTGTGTCCAACACTC
10925004 ATCG
66 ATCG
10925008 CATATAGTTG
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
76 57 0.98
77 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (76 bp):
TGAAGCAAGTAGATTGCGCCCAACGCTCATCAGTTTAACCAAAGTAATAATTGTGTCCAACACTC
ATCGAAATGTT
Found at i:10926721 original size:54 final size:54
Alignment explanation
Indices: 10926663--10926784 Score: 147
Period size: 54 Copynumber: 2.3 Consensus size: 54
10926653 GTCTTCACCT
* **
10926663 GTGTAACTCACTGAGATGCC-CTACACACTCGTGTGTTAGGCCGTGTGCTAGACC
1 GTGTAACTCACTGAGATGCCAC-ACACACCCGTGTGCCAGGCCGTGTGCTAGACC
* * * * * *
10926717 GTGTAACTCTCTGAGTTGCCACACACGCCCGTGTGCCAGGCCGTGTGCTTGGCT
1 GTGTAACTCACTGAGATGCCACACACACCCGTGTGCCAGGCCGTGTGCTAGACC
10926771 GTGTAACTCACTGA
1 GTGTAACTCACTGA
10926785 CTTGAACGCT
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
54 56 0.98
55 1 0.02
ACGTcount: A:0.18, C:0.29, G:0.27, T:0.26
Consensus pattern (54 bp):
GTGTAACTCACTGAGATGCCACACACACCCGTGTGCCAGGCCGTGTGCTAGACC
Found at i:10927540 original size:40 final size:39
Alignment explanation
Indices: 10927473--10927669 Score: 214
Period size: 40 Copynumber: 4.9 Consensus size: 39
10927463 GATTTAGGAT
* *
10927473 TACCAAAGTACTAACAAGGGCACGTATGTGCATTCAGTGG
1 TACCGAAGTACAAACAAGGGCACGTATGTGCATTCAG-GG
* * *
10927513 TATCGAAGTACAAACAAGGACATGTATGTGCATTCAAGGG
1 TACCGAAGTACAAACAAGGGCACGTATGTGCATTC-AGGG
* * *
10927553 TACCGAAATACAAACAGGGGCACATATGTGCATTCAGGG
1 TACCGAAGTACAAACAAGGGCACGTATGTGCATTCAGGG
* * * * *
10927592 TTACCAAAGTACAAACAATGACACATATGTACATTCAGGGG
1 -TACCGAAGTACAAACAAGGGCACGTATGTGCATTCA-GGG
* * *
10927633 TATCGAAATACAAACAGGGGCACGTATGTGCATTCAG
1 TACCGAAGTACAAACAAGGGCACGTATGTGCATTCAG
10927670 ATAATAATTA
Statistics
Matches: 129, Mismatches: 25, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
39 5 0.04
40 119 0.92
41 5 0.04
ACGTcount: A:0.37, C:0.19, G:0.23, T:0.21
Consensus pattern (39 bp):
TACCGAAGTACAAACAAGGGCACGTATGTGCATTCAGGG
Found at i:10927627 original size:80 final size:80
Alignment explanation
Indices: 10927485--10927669 Score: 264
Period size: 80 Copynumber: 2.3 Consensus size: 80
10927475 CCAAAGTACT
* * * ** *
10927485 AACAAGGGCACGTATGTGCATTCAGTGGTATCGAAGTACAAACAAGGACATGTATGTGCATTCAA
1 AACAGGGGCACGTATGTGCATTCAGTGGTACCAAAGTACAAACAAGGACACATATGTACATTCAA
10927550 GGGTACCGAAATACA
66 GGGTACCGAAATACA
* *
10927565 AACAGGGGCACATATGTGCATTCAG-GGTTACCAAAGTACAAACAATGACACATATGTACATTCA
1 AACAGGGGCACGTATGTGCATTCAGTGG-TACCAAAGTACAAACAAGGACACATATGTACATTCA
* *
10927629 GGGGTATCGAAATACA
65 AGGGTACCGAAATACA
10927645 AACAGGGGCACGTATGTGCATTCAG
1 AACAGGGGCACGTATGTGCATTCAG
10927670 ATAATAATTA
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
79 2 0.02
80 91 0.98
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.21
Consensus pattern (80 bp):
AACAGGGGCACGTATGTGCATTCAGTGGTACCAAAGTACAAACAAGGACACATATGTACATTCAA
GGGTACCGAAATACA
Found at i:10928322 original size:32 final size:32
Alignment explanation
Indices: 10928282--10928346 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
10928272 CAACGATCTC
10928282 AAAAACATAAAAATTACAAGAAATATGTGAGA
1 AAAAACATAAAAATTACAAGAAATATGTGAGA
10928314 AAAAACATAAAAATTACAAGAAATATGTGAGA
1 AAAAACATAAAAATTACAAGAAATATGTGAGA
10928346 A
1 A
10928347 TTGAGCTCAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.63, C:0.06, G:0.12, T:0.18
Consensus pattern (32 bp):
AAAAACATAAAAATTACAAGAAATATGTGAGA
Found at i:10930240 original size:9 final size:9
Alignment explanation
Indices: 10930229--10930304 Score: 98
Period size: 9 Copynumber: 8.4 Consensus size: 9
10930219 TTTGGTTAAA
*
10930229 AATTAACCA
1 AATTAACCG
10930238 AATTAACCG
1 AATTAACCG
10930247 AATTAACCG
1 AATTAACCG
* *
10930256 AATTACCCA
1 AATTAACCG
10930265 AATTAACCG
1 AATTAACCG
*
10930274 AATTAACTG
1 AATTAACCG
*
10930283 AATTACCCG
1 AATTAACCG
*
10930292 AATTAACCA
1 AATTAACCG
10930301 AATT
1 AATT
10930305 GAATCACTAC
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 57 1.00
ACGTcount: A:0.46, C:0.22, G:0.07, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:10930260 original size:27 final size:27
Alignment explanation
Indices: 10930229--10930304 Score: 116
Period size: 27 Copynumber: 2.8 Consensus size: 27
10930219 TTTGGTTAAA
*
10930229 AATTAACCAAATTAACCGAATTAACCG
1 AATTACCCAAATTAACCGAATTAACCG
*
10930256 AATTACCCAAATTAACCGAATTAACTG
1 AATTACCCAAATTAACCGAATTAACCG
* *
10930283 AATTACCCGAATTAACCAAATT
1 AATTACCCAAATTAACCGAATT
10930305 GAATCACTAC
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.46, C:0.22, G:0.07, T:0.25
Consensus pattern (27 bp):
AATTACCCAAATTAACCGAATTAACCG
Found at i:10930451 original size:18 final size:18
Alignment explanation
Indices: 10930411--10930454 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
10930401 TAATTTTATG
**
10930411 ATTGGGTTGGGTTGGGTA
1 ATTGGGTTGGGTTGAATA
10930429 ATTGGGTTGGGTTGAATA
1 ATTGGGTTGGGTTGAATA
*
10930447 CTTGGGTT
1 ATTGGGTT
10930455 TAGATTGGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.14, C:0.02, G:0.43, T:0.41
Consensus pattern (18 bp):
ATTGGGTTGGGTTGAATA
Found at i:10940131 original size:19 final size:20
Alignment explanation
Indices: 10940107--10940144 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
10940097 TTGAAAAGTT
10940107 AAAATTGATT-TTTT-TTTAA
1 AAAATT-ATTCTTTTATTTAA
10940126 AAAATTATTCTTTTATTTA
1 AAAATTATTCTTTTATTTA
10940145 TTTTTATTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 3 0.18
19 10 0.59
20 4 0.24
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.58
Consensus pattern (20 bp):
AAAATTATTCTTTTATTTAA
Found at i:10940310 original size:27 final size:28
Alignment explanation
Indices: 10940257--10940316 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 28
10940247 AGATAATTGT
* *
10940257 ATTAATTTATTTTATTTAAAATAAATAG
1 ATTAAATTATTTTATTTAAAATAAATAA
*
10940285 ATTAAATTA-TTTATTTGTAAAT-AATAA
1 ATTAAATTATTTTATTT-AAAATAAATAA
10940312 ATTAA
1 ATTAA
10940317 CTTTTGTTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 16 0.57
28 12 0.43
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (28 bp):
ATTAAATTATTTTATTTAAAATAAATAA
Found at i:10940892 original size:23 final size:23
Alignment explanation
Indices: 10940837--10940886 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
10940827 ATATATATAT
*
10940837 AAAAACTATTCATATTCTTTGAG
1 AAAAACTATTCAAATTCTTTGAG
*
10940860 AAAAACTATTCAAATT-TTTTAG
1 AAAAACTATTCAAATTCTTTGAG
10940882 AAAAA
1 AAAAA
10940887 TTTATTGAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 10 0.40
23 15 0.60
ACGTcount: A:0.48, C:0.10, G:0.06, T:0.36
Consensus pattern (23 bp):
AAAAACTATTCAAATTCTTTGAG
Found at i:10942671 original size:45 final size:45
Alignment explanation
Indices: 10942607--10942696 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
10942597 CTTGTTTCAA
*
10942607 AACCTAAAAATAACCATTAGATAAGAGGGAGCATTTAGTCAAGCT
1 AACCTAAAAATAACCATTAGATAAGAGGGAGCATTCAGTCAAGCT
10942652 AACCTAAAAATAACCATTAGATAAGAGGGAGCATTCAGTCAAGCT
1 AACCTAAAAATAACCATTAGATAAGAGGGAGCATTCAGTCAAGCT
10942697 TGTGTTGATT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.44, C:0.17, G:0.18, T:0.21
Consensus pattern (45 bp):
AACCTAAAAATAACCATTAGATAAGAGGGAGCATTCAGTCAAGCT
Found at i:10949795 original size:24 final size:25
Alignment explanation
Indices: 10949768--10949822 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 25
10949758 AAGCCATAAA
10949768 CGGGAA-GCTCATA-CGAGCCAATAT
1 CGGGAAGGCTCA-AGCGAGCCAATAT
*
10949792 CGGGAAGGTTCAAGCGAGCCAATAT
1 CGGGAAGGCTCAAGCGAGCCAATAT
10949817 CGGGAA
1 CGGGAA
10949823 CCTATGGAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 7 0.25
25 21 0.75
ACGTcount: A:0.33, C:0.22, G:0.31, T:0.15
Consensus pattern (25 bp):
CGGGAAGGCTCAAGCGAGCCAATAT
Found at i:10950254 original size:22 final size:23
Alignment explanation
Indices: 10950202--10950254 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 23
10950192 ACATGGCACT
*
10950202 TATAC-ATTTCAAACACATAACA
1 TATACAATTTAAAACACATAACA
*
10950224 T-T-CAATTTAAAACATATAA-A
1 TATACAATTTAAAACACATAACA
10950244 TATACAATTTA
1 TATACAATTTA
10950255 GTTACACGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
20 3 0.12
21 15 0.58
22 8 0.31
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.34
Consensus pattern (23 bp):
TATACAATTTAAAACACATAACA
Found at i:10954989 original size:24 final size:24
Alignment explanation
Indices: 10954962--10955011 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
10954952 TATAAAAACA
10954962 CATAAACAGGAAGCTCATAAGAGC
1 CATAAACAGGAAGCTCATAAGAGC
** *
10954986 CATACTCAGGAAGCTCATACGAGC
1 CATAAACAGGAAGCTCATAAGAGC
10955010 CA
1 CA
10955012 ATAAGGGGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.40, C:0.26, G:0.20, T:0.14
Consensus pattern (24 bp):
CATAAACAGGAAGCTCATAAGAGC
Found at i:10955067 original size:25 final size:23
Alignment explanation
Indices: 10955039--10955097 Score: 55
Period size: 25 Copynumber: 2.5 Consensus size: 23
10955029 AGATCCATTA
* *
10955039 ATCGGGAAGCTCTAGATAGCCATAT
1 ATCGGGAAGCTCAAGAGAGCC--AT
* * *
10955064 ATCGAGAAGTTCAAGCGAGCCAT
1 ATCGGGAAGCTCAAGAGAGCCAT
10955087 ATCGGGAAGCT
1 ATCGGGAAGCT
10955098 TCGAAGAGCC
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
23 11 0.41
25 16 0.59
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.20
Consensus pattern (23 bp):
ATCGGGAAGCTCAAGAGAGCCAT
Found at i:10956122 original size:26 final size:26
Alignment explanation
Indices: 10956086--10956140 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
10956076 TTCTTTTCCC
10956086 TTAGCTAGGGTTTCCATGAAAATAAT
1 TTAGCTAGGGTTTCCATGAAAATAAT
10956112 TTAGCTAGGGTTTCCATGAAAATAAT
1 TTAGCTAGGGTTTCCATGAAAATAAT
10956138 TTA
1 TTA
10956141 AGGAAAGATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.36
Consensus pattern (26 bp):
TTAGCTAGGGTTTCCATGAAAATAAT
Found at i:10963829 original size:18 final size:18
Alignment explanation
Indices: 10963806--10963842 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
10963796 ATAAAAGAGG
10963806 CCCCTACCTCTACCCCTA
1 CCCCTACCTCTACCCCTA
*
10963824 CCCCTACTTCTACCCCTA
1 CCCCTACCTCTACCCCTA
10963842 C
1 C
10963843 AACATTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.16, C:0.59, G:0.00, T:0.24
Consensus pattern (18 bp):
CCCCTACCTCTACCCCTA
Found at i:10964003 original size:11 final size:11
Alignment explanation
Indices: 10963987--10964016 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
10963977 TTCAATTGTT
10963987 AGGCATAAGAA
1 AGGCATAAGAA
10963998 AGGCATAAGAA
1 AGGCATAAGAA
*
10964009 AGGGATAA
1 AGGCATAA
10964017 CTACCTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.53, C:0.07, G:0.30, T:0.10
Consensus pattern (11 bp):
AGGCATAAGAA
Found at i:10965971 original size:21 final size:19
Alignment explanation
Indices: 10965943--10966005 Score: 63
Period size: 21 Copynumber: 3.1 Consensus size: 19
10965933 GTGATAAAAA
10965943 ATAAAAATCAATAAAATTTAT
1 ATAAAAAT-AATAAAATTT-T
* *
10965964 ATTAAAATATTAAAATTTT
1 ATAAAAATAATAAAATTTT
10965983 ATAAAAATTATATAAAATATTT
1 ATAAAAA-TA-ATAAAAT-TTT
10966005 A
1 A
10966006 AATTTTATTA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
19 7 0.20
20 11 0.31
21 13 0.37
22 4 0.11
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.40
Consensus pattern (19 bp):
ATAAAAATAATAAAATTTT
Found at i:10965998 original size:29 final size:30
Alignment explanation
Indices: 10965953--10966021 Score: 104
Period size: 30 Copynumber: 2.3 Consensus size: 30
10965943 ATAAAAATCA
*
10965953 ATAAAATTTATATTAAAATATTAAAATTTT
1 ATAAAAATTATATTAAAATATTAAAATTTT
*
10965983 ATAAAAATTATA-TAAAATATTTAAATTTT
1 ATAAAAATTATATTAAAATATTAAAATTTT
10966012 ATTAAAAATT
1 A-TAAAAATT
10966022 GAAAAAATTA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
29 17 0.47
30 19 0.53
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (30 bp):
ATAAAAATTATATTAAAATATTAAAATTTT
Found at i:10966032 original size:19 final size:20
Alignment explanation
Indices: 10966010--10966058 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
10966000 TATTTAAATT
*
10966010 TTATTAAAAATTGA-AAAAA
1 TTATTAAAAATTCACAAAAA
*
10966029 TTA-TAAAAAATCACAAAAA
1 TTATTAAAAATTCACAAAAA
*
10966048 TTATAAAAAAT
1 TTATTAAAAAT
10966059 CTTAAATAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 8 0.33
19 11 0.46
20 5 0.21
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (20 bp):
TTATTAAAAATTCACAAAAA
Found at i:10966036 original size:9 final size:9
Alignment explanation
Indices: 10965981--10966123 Score: 60
Period size: 10 Copynumber: 14.9 Consensus size: 9
10965971 TATTAAAATT
10965981 TTATAAAAA
1 TTATAAAAA
10965990 TTATATAAAA
1 TTATA-AAAA
* **
10966000 TATTTAAATT
1 T-TATAAAAA
10966010 TTATTAAAAA
1 TTA-TAAAAA
10966020 TTGA-AAAAA
1 TT-ATAAAAA
10966029 TTATAAAAAA
1 TTAT-AAAAA
* *
10966039 TCACAAAAA
1 TTATAAAAA
10966048 TTATAAAAAA
1 TTAT-AAAAA
10966058 TCT-TAAATAA
1 T-TATAAA-AA
10966068 TT-TATAAAA
1 TTATA-AAAA
* *
10966077 TTGTAAATA
1 TTATAAAAA
*
10966086 -TATAAAAT
1 TTATAAAAA
*
10966094 TGTAAAAAGATA
1 T-TATAAA-A-A
10966106 TTATAAAAAA
1 TTAT-AAAAA
10966116 TTATAAAA
1 TTATAAAA
10966124 TCAAGTAGAG
Statistics
Matches: 101, Mismatches: 17, Indels: 32
0.67 0.11 0.21
Matches are distributed among these distances:
8 6 0.06
9 37 0.37
10 45 0.45
11 9 0.09
12 4 0.04
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (9 bp):
TTATAAAAA
Found at i:10966194 original size:4 final size:4
Alignment explanation
Indices: 10966185--10966222 Score: 58
Period size: 4 Copynumber: 9.5 Consensus size: 4
10966175 TGGGGAGTAT
* *
10966185 TACA TACA TACA TACA CACA TACA TACA TGCA TACA TA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TA
10966223 TTCACTATAG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.47, C:0.26, G:0.03, T:0.24
Consensus pattern (4 bp):
TACA
Found at i:10966604 original size:20 final size:17
Alignment explanation
Indices: 10966578--10966620 Score: 50
Period size: 19 Copynumber: 2.4 Consensus size: 17
10966568 ATTTTTACAA
*
10966578 AATTTTACAGTTTCTTTAT
1 AATTTTA-AGATTC-TTAT
10966597 ATATTTTAAGATTCTTAT
1 A-ATTTTAAGATTCTTAT
10966615 AATTTT
1 AATTTT
10966621 TTTATAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 5 0.23
18 5 0.23
19 6 0.27
20 6 0.27
ACGTcount: A:0.30, C:0.07, G:0.05, T:0.58
Consensus pattern (17 bp):
AATTTTAAGATTCTTAT
Found at i:11007375 original size:41 final size:41
Alignment explanation
Indices: 11007318--11007398 Score: 126
Period size: 41 Copynumber: 2.0 Consensus size: 41
11007308 GTGGAACAAC
11007318 AATTGTGTATATTATGTTTCTAACTAAGTTGGTGTTACGAT
1 AATTGTGTATATTATGTTTCTAACTAAGTTGGTGTTACGAT
* * **
11007359 AATTGTGTGTATTATGTTTTTAGTTAAGTTGGTGTTACGA
1 AATTGTGTATATTATGTTTCTAACTAAGTTGGTGTTACGA
11007399 GTCAATTAAG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.25, C:0.05, G:0.22, T:0.48
Consensus pattern (41 bp):
AATTGTGTATATTATGTTTCTAACTAAGTTGGTGTTACGAT
Found at i:11010551 original size:20 final size:20
Alignment explanation
Indices: 11010526--11010565 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
11010516 ATCTCGAACT
11010526 TTGAACCCCAAACCTCAAAC
1 TTGAACCCCAAACCTCAAAC
**
11010546 TTGAACCTTAAACCTCAAAC
1 TTGAACCCCAAACCTCAAAC
11010566 GTCAAACCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.40, C:0.35, G:0.05, T:0.20
Consensus pattern (20 bp):
TTGAACCCCAAACCTCAAAC
Found at i:11010589 original size:14 final size:14
Alignment explanation
Indices: 11010555--11010589 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
11010545 CTTGAACCTT
* *
11010555 AAACCTCAAACGTC
1 AAACCTTAAACATC
11010569 AAACCTTAAACATC
1 AAACCTTAAACATC
11010583 AAACCTT
1 AAACCTT
11010590 GAACCCTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.46, C:0.31, G:0.03, T:0.20
Consensus pattern (14 bp):
AAACCTTAAACATC
Found at i:11010594 original size:21 final size:21
Alignment explanation
Indices: 11010526--11010600 Score: 80
Period size: 21 Copynumber: 3.6 Consensus size: 21
11010516 ATCTCGAACT
*
11010526 TTGAACCCCAAACCTCAAA-C
1 TTGAACCCTAAACCTCAAACC
* *
11010546 TTGAACCTTAAACCTCAAACG
1 TTGAACCCTAAACCTCAAACC
** * *
11010567 TCAAACCTTAAACATCAAACC
1 TTGAACCCTAAACCTCAAACC
11010588 TTGAACCCTAAAC
1 TTGAACCCTAAAC
11010601 TTTAGACCTC
Statistics
Matches: 44, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
20 17 0.39
21 27 0.61
ACGTcount: A:0.41, C:0.33, G:0.05, T:0.20
Consensus pattern (21 bp):
TTGAACCCTAAACCTCAAACC
Found at i:11011735 original size:13 final size:13
Alignment explanation
Indices: 11011717--11011752 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
11011707 CTTCGTAATT
11011717 TAATTTAAACAAA
1 TAATTTAAACAAA
11011730 TAATTTAAACAAA
1 TAATTTAAACAAA
*
11011743 TAATATAAAC
1 TAATTTAAAC
11011753 CAGACTAGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.61, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TAATTTAAACAAA
Found at i:11014430 original size:37 final size:37
Alignment explanation
Indices: 11014389--11014564 Score: 298
Period size: 37 Copynumber: 4.8 Consensus size: 37
11014379 TTTGAGTACT
11014389 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
11014426 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
11014463 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
11014500 TCTGATCAAGAGACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
** *
11014537 TCTGATCAAGTGATAAAGTGATAAGTGG
1 TCTGATCAAGAAACAAAGTGATAAGTGG
11014565 TAGCTTCAGC
Statistics
Matches: 134, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 134 1.00
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.26
Consensus pattern (37 bp):
TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
Found at i:11014636 original size:45 final size:46
Alignment explanation
Indices: 11014527--11014650 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
11014517 GTGATAAGTG
* *
11014527 GCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTCA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
*
11014573 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGCCT-A
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
11014618 GCTACACTTATCTGATCAAG-GAC-AAGTGATAAG
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAG
11014651 AGGTCATATG
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 10 0.14
44 2 0.03
45 21 0.28
46 41 0.55
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (46 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
Found at i:11023015 original size:9 final size:9
Alignment explanation
Indices: 11022986--11023025 Score: 53
Period size: 9 Copynumber: 4.2 Consensus size: 9
11022976 GTTCTTGGCA
11022986 TTTTATTTT
1 TTTTATTTT
*
11022995 TTTTCCTCTTT
1 TTTT-AT-TTT
11023006 TTTTATTTT
1 TTTTATTTT
11023015 TTTTATTTT
1 TTTTATTTT
11023024 TT
1 TT
11023026 ATATAATTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
9 18 0.67
10 2 0.07
11 7 0.26
ACGTcount: A:0.07, C:0.07, G:0.00, T:0.85
Consensus pattern (9 bp):
TTTTATTTT
Found at i:11023570 original size:31 final size:31
Alignment explanation
Indices: 11023522--11023580 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
11023512 AATAACTCAC
*
11023522 TAAATTTTACTACAACCATGTTAGATTTAAG
1 TAAAGTTTACTACAACCATGTTAGATTTAAG
*
11023553 TAAAGTTTAGTACAACCATGTTAGATTT
1 TAAAGTTTACTACAACCATGTTAGATTT
11023581 CAAAAAAACA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39
Consensus pattern (31 bp):
TAAAGTTTACTACAACCATGTTAGATTTAAG
Done.