Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 46 of 222
Found at i:13712627 original size:16 final size:16
Alignment explanation
Indices: 13712603--13712637 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
13712593 TTGTGTTTTG
*
13712603 TTTTGACTGCATGACA
1 TTTTCACTGCATGACA
*
13712619 TTTTCACTGCATGGCA
1 TTTTCACTGCATGACA
13712635 TTT
1 TTT
13712638 CATTATAGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.20, C:0.20, G:0.17, T:0.43
Consensus pattern (16 bp):
TTTTCACTGCATGACA
Found at i:13716343 original size:17 final size:17
Alignment explanation
Indices: 13716321--13716355 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
13716311 TTTGACTCGT
*
13716321 ATGCTTTGATGTAAGTG
1 ATGCTTCGATGTAAGTG
13716338 ATGCTTCGATGTAAGTG
1 ATGCTTCGATGTAAGTG
13716355 A
1 A
13716356 AAGCCTAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.26, C:0.09, G:0.29, T:0.37
Consensus pattern (17 bp):
ATGCTTCGATGTAAGTG
Found at i:13738153 original size:14 final size:14
Alignment explanation
Indices: 13738134--13738164 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
13738124 ATAAAAAACC
*
13738134 CAACAAATTCTAAA
1 CAACAAATACTAAA
13738148 CAACAAATACTAAA
1 CAACAAATACTAAA
13738162 CAA
1 CAA
13738165 GGATTTGTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.61, C:0.23, G:0.00, T:0.16
Consensus pattern (14 bp):
CAACAAATACTAAA
Found at i:13740065 original size:15 final size:15
Alignment explanation
Indices: 13740037--13740074 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
13740027 AGAATGTGGA
13740037 CTATTAA-T-TTTTT
1 CTATTAATTCTTTTT
13740050 CTATTAATTCTTTTT
1 CTATTAATTCTTTTT
13740065 CTATTAATTC
1 CTATTAATTC
13740075 CTTAATTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 7 0.30
14 1 0.04
15 15 0.65
ACGTcount: A:0.24, C:0.13, G:0.00, T:0.63
Consensus pattern (15 bp):
CTATTAATTCTTTTT
Found at i:13740993 original size:14 final size:14
Alignment explanation
Indices: 13740958--13740995 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
13740948 GAATTCCTCC
*
13740958 TTGCAAACTGGACA
1 TTGCAAATTGGACA
13740972 TTGCAAATTGGACA
1 TTGCAAATTGGACA
13740986 TTGCAAATTG
1 TTGCAAATTG
13740996 TCAATCAGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (14 bp):
TTGCAAATTGGACA
Found at i:13741648 original size:117 final size:117
Alignment explanation
Indices: 13741268--13741670 Score: 422
Period size: 117 Copynumber: 3.4 Consensus size: 117
13741258 CTTGTTCTCT
* ** ** * *
13741268 AATTTCATTT-TCATCGGAACTAAGGCTTCTATGCCTTCCACGATGCTCAAAGGGATTGCTTACA
1 AATTTCATTTCT-ATCGGAACTATGGCTTCTACACCTTTGACGATGCTCAAGGGGATTACTTACA
* * *
13741332 GATCCAGCTCCTAAGAAATGATGCCTGA-GAAGAGGCCAGCC-GAAAGGTTCTTG
65 GATTCAGCTCCCAAGAAATGACGCCTGAGGAA-AGGCCAGCCTG-AAGGTTCTTG
* * * ** *
13741385 ATTTTCATTT-TGACCGGAACTACGGAAGT-TACACCTTTGACGATGCTCAAGGGGATTATTTAC
1 AATTTCATTTCT-ATCGGAACTATGG-CTTCTACACCTTTGACGATGCTCAAGGGGATTACTTAC
* * *
13741448 AGATTCAGCTCCC-AGAAAATGACGCCTGAGGAAAGGCCGGCCTAAAGATTCTTG
64 AGATTCAGCTCCCAAG-AAATGACGCCTGAGGAAAGGCCAGCCTGAAGGTTCTTG
* * * * * * *
13741502 AACTTCATTTCCATTGGAACCATGTCTTCTACACCTTTGACGATGCTCAGGGGGATTACTTATAG
1 AATTTCATTTCTATCGGAACTATGGCTTCTACACCTTTGACGATGCTCAAGGGGATTACTTACAG
* *
13741567 ATTCTGCTCCCAAGAAATGACGCCTGAGGAAAGGCCAACCTGAAGGTTCTTG
66 ATTCAGCTCCCAAGAAATGACGCCTGAGGAAAGGCCAGCCTGAAGGTTCTTG
** * *
13741619 AATTTCATTTCTATCATAACTATGGCTTCTACGCCTTTGACAATGCTCAAGG
1 AATTTCATTTCTATCGGAACTATGGCTTCTACACCTTTGACGATGCTCAAGG
13741671 AAATGAAGCC
Statistics
Matches: 232, Mismatches: 47, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
116 3 0.01
117 223 0.96
118 6 0.03
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (117 bp):
AATTTCATTTCTATCGGAACTATGGCTTCTACACCTTTGACGATGCTCAAGGGGATTACTTACAG
ATTCAGCTCCCAAGAAATGACGCCTGAGGAAAGGCCAGCCTGAAGGTTCTTG
Found at i:13754392 original size:14 final size:14
Alignment explanation
Indices: 13754373--13754403 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
13754363 ATAAAAAACC
*
13754373 CAACAAATTCTAAA
1 CAACAAATACTAAA
13754387 CAACAAATACTAAA
1 CAACAAATACTAAA
13754401 CAA
1 CAA
13754404 GGATTTGTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.61, C:0.23, G:0.00, T:0.16
Consensus pattern (14 bp):
CAACAAATACTAAA
Found at i:13756297 original size:15 final size:15
Alignment explanation
Indices: 13756269--13756306 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
13756259 AGAATGTGGA
13756269 CTATTAA-T-TTTTT
1 CTATTAATTCTTTTT
13756282 CTATTAATTCTTTTT
1 CTATTAATTCTTTTT
13756297 CTATTAATTC
1 CTATTAATTC
13756307 CTTAATTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 7 0.30
14 1 0.04
15 15 0.65
ACGTcount: A:0.24, C:0.13, G:0.00, T:0.63
Consensus pattern (15 bp):
CTATTAATTCTTTTT
Found at i:13757223 original size:14 final size:14
Alignment explanation
Indices: 13757188--13757225 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
13757178 GAATTCCTCC
*
13757188 TTGCAAACTGGACA
1 TTGCAAATTGGACA
13757202 TTGCAAATTGGACA
1 TTGCAAATTGGACA
13757216 TTGCAAATTG
1 TTGCAAATTG
13757226 TCAATCAGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (14 bp):
TTGCAAATTGGACA
Found at i:13757878 original size:117 final size:117
Alignment explanation
Indices: 13757498--13757900 Score: 422
Period size: 117 Copynumber: 3.4 Consensus size: 117
13757488 CTTGTTCTCT
* ** ** * *
13757498 AATTTCATTT-TCATCGGAACTAAGGCTTCTATGCCTTCCACGATGCTCAAAGGGATTGCTTACA
1 AATTTCATTTCT-ATCGGAACTATGGCTTCTACACCTTTGACGATGCTCAAGGGGATTACTTACA
* * *
13757562 GATCCAGCTCCTAAGAAATGATGCCTGA-GAAGAGGCCAGCC-GAAAGGTTCTTG
65 GATTCAGCTCCCAAGAAATGACGCCTGAGGAA-AGGCCAGCCTG-AAGGTTCTTG
* * * ** *
13757615 ATTTTCATTT-TGACCGGAACTACGGAAGT-TACACCTTTGACGATGCTCAAGGGGATTATTTAC
1 AATTTCATTTCT-ATCGGAACTATGG-CTTCTACACCTTTGACGATGCTCAAGGGGATTACTTAC
* * *
13757678 AGATTCAGCTCCC-AGAAAATGACGCCTGAGGAAAGGCCGGCCTAAAGATTCTTG
64 AGATTCAGCTCCCAAG-AAATGACGCCTGAGGAAAGGCCAGCCTGAAGGTTCTTG
* * * * * * *
13757732 AACTTCATTTCCATTGGAACCATGTCTTCTACACCTTTGACGATGCTCAGGGGGATTACTTATAG
1 AATTTCATTTCTATCGGAACTATGGCTTCTACACCTTTGACGATGCTCAAGGGGATTACTTACAG
* *
13757797 ATTCTGCTCCCAAGAAATGACGCCTGAGGAAAGGCCAACCTGAAGGTTCTTG
66 ATTCAGCTCCCAAGAAATGACGCCTGAGGAAAGGCCAGCCTGAAGGTTCTTG
** * *
13757849 AATTTCATTTCTATCATAACTATGGCTTCTACGCCTTTGACAATGCTCAAGG
1 AATTTCATTTCTATCGGAACTATGGCTTCTACACCTTTGACGATGCTCAAGG
13757901 AAATGAAGCC
Statistics
Matches: 232, Mismatches: 47, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
116 3 0.01
117 223 0.96
118 6 0.03
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (117 bp):
AATTTCATTTCTATCGGAACTATGGCTTCTACACCTTTGACGATGCTCAAGGGGATTACTTACAG
ATTCAGCTCCCAAGAAATGACGCCTGAGGAAAGGCCAGCCTGAAGGTTCTTG
Found at i:13758182 original size:144 final size:144
Alignment explanation
Indices: 13757965--13758237 Score: 345
Period size: 144 Copynumber: 1.9 Consensus size: 144
13757955 ACATGTTCTT
*** * *
13757965 GTTCTCTAATTTCACTTCCATGGGAACTATGGCTTCTATACTTTCGACGATGCTCAAAGGGATTA
1 GTTCTCTAATTTCACTTCCATCAAAACTATGGCTTCTAGACTTTCGAAGATGCTCAAAGGGATTA
* *
13758030 TTTACAGATTCGACTCCCAATAAACGACT-TCTGAGCAAAGGCCAACCTAAAGGTTCTTGATTAT
66 TTTACAGATTCGACTCCCAATAAACGA-TGCCCGAGCAAAGGCCAACCTAAAGGTTCTTGATTAT
13758094 CAAAACGTTGTGCAG
130 CAAAACGTTGTGCAG
** * *
13758109 GTTCTCTAATTTCGTTTCCATCAAAACTATGGCTTCTACGCCTTT-GAAGA-GACTCAAGGGGAT
1 GTTCTCTAATTTCACTTCCATCAAAACTATGGCTTCTA-GACTTTCGAAGATG-CTCAAAGGGAT
** * * * *
13758172 TATTTACAGATTCGGGTCCTAGTAAACGATGCCCGAGCAAAGGCCAACTTACAGGTTCTTGATTA
64 TATTTACAGATTCGACTCCCAATAAACGATGCCCGAGCAAAGGCCAACCTAAAGGTTCTTGATTA
13758237 T
129 T
13758238 TGGAACAATC
Statistics
Matches: 109, Mismatches: 17, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
143 2 0.02
144 103 0.94
145 4 0.04
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (144 bp):
GTTCTCTAATTTCACTTCCATCAAAACTATGGCTTCTAGACTTTCGAAGATGCTCAAAGGGATTA
TTTACAGATTCGACTCCCAATAAACGATGCCCGAGCAAAGGCCAACCTAAAGGTTCTTGATTATC
AAAACGTTGTGCAG
Found at i:13771605 original size:40 final size:40
Alignment explanation
Indices: 13771522--13771744 Score: 213
Period size: 40 Copynumber: 5.6 Consensus size: 40
13771512 TTGAATGCTG
* * * * *
13771522 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGA-T-ACTAAA
* * *
13771562 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGATACTAAA
* **
13771602 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
**
13771642 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGA-ATTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGA-TACTAAA
* * *
13771682 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
* *
13771721 TCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
13771745 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 18, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
39 34 0.21
40 114 0.72
41 10 0.06
42 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
Found at i:13771659 original size:80 final size:79
Alignment explanation
Indices: 13771522--13771746 Score: 242
Period size: 80 Copynumber: 2.8 Consensus size: 79
13771512 TTGAATGCTG
* * * * * *
13771522 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCCT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTG-ATAAATCCGGGTTAAG-TCCCGAAGGCAT
13771585 TTGTGCGAGA-TACTAAA
63 TTGTGCGA-ATTACTAAA
* *
13771602 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTGATAAATCCGGGTTAAGTCCCGAAGGCATTT
**
13771667 GTGCGAATTGTTAAA
65 GTGCGAATTACTAAA
* * * *
13771682 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTT-ACTAAATCCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTGA-TAAATCCGGGTTAAGTCCCGAAGGCATTT
13771746 G
65 G
13771747 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
79 37 0.30
80 81 0.65
81 6 0.05
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTGATAAATCCGGGTTAAGTCCCGAAGGCATTTG
TGCGAATTACTAAA
Found at i:13771764 original size:79 final size:80
Alignment explanation
Indices: 13771597--13771779 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
13771587 GTGCGAGATA
** *
13771597 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
** **
13771662 CATTCGTGCGAATTG
66 CATTCGAACGAAGAG
* * * *
13771677 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
* *
13771741 CATTTGAACGAGGAG
66 CATTCGAACGAAGAG
* *
13771756 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
13771780 TACGTGATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.16
79 45 0.52
80 27 0.31
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
CATTCGAACGAAGAG
Found at i:13771764 original size:119 final size:120
Alignment explanation
Indices: 13771522--13771779 Score: 281
Period size: 119 Copynumber: 2.2 Consensus size: 120
13771512 TTGAATGCTG
* * * * *
13771522 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTTT
1 TCCGGGTTAAGTCCCGAAGGCTTCGTGCGAAGTGAATAAATCCGGATTAAGATCCGAAGGCCATT
* ** ** *
13771587 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
66 GTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
* * * *
13771642 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTG-TTAAATCCGGGTTATG-TCCCGAAGG-CA
1 TCCGGGTTAAGTCCCGAAGGC-TTCGTGCGAAGTGAATAAATCCGGATTAAGAT-CCGAAGGCCA
* * * * *
13771704 TTGTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATA
64 TTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
*
13771761 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
13771780 TACGTGATTT
Statistics
Matches: 115, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
118 15 0.13
119 51 0.44
120 39 0.34
121 10 0.09
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCTTCGTGCGAAGTGAATAAATCCGGATTAAGATCCGAAGGCCATT
GTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
Found at i:13774379 original size:2 final size:2
Alignment explanation
Indices: 13774372--13774413 Score: 50
Period size: 2 Copynumber: 20.5 Consensus size: 2
13774362 TTATTTTGTT
*
13774372 TA TA TA TA TA TA TA TA TA TA TGA TT TGA TA -A TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA T-A TA T-A TA TA TA TA TA TA TA T
13774414 CTATTGAGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
1 1 0.03
2 31 0.89
3 3 0.09
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (2 bp):
TA
Found at i:13776567 original size:13 final size:13
Alignment explanation
Indices: 13776549--13776580 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
13776539 CTGTAGGGGT
13776549 CACACGACTGAGG
1 CACACGACTGAGG
*
13776562 CACACGGCTGAGG
1 CACACGACTGAGG
13776575 CACACG
1 CACACG
13776581 CCTATGTCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.28, C:0.34, G:0.31, T:0.06
Consensus pattern (13 bp):
CACACGACTGAGG
Found at i:13777622 original size:19 final size:19
Alignment explanation
Indices: 13777576--13777631 Score: 94
Period size: 21 Copynumber: 2.8 Consensus size: 19
13777566 AATCTTCAAG
13777576 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
13777595 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
13777616 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
13777632 AGATATGATT
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
19 16 0.46
21 19 0.54
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:13777653 original size:23 final size:22
Alignment explanation
Indices: 13777576--13777654 Score: 78
Period size: 19 Copynumber: 3.7 Consensus size: 22
13777566 AATCTTCAAG
*
13777576 GATATGCAATCTTAG-ATATGAT
1 GATATGCAATCTTAGAAGAT-AT
13777598 -ATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
13777616 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
13777638 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
13777655 GATTTAATTT
Statistics
Matches: 49, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
18 2 0.04
19 15 0.31
21 12 0.24
22 8 0.16
23 12 0.24
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:13777902 original size:23 final size:23
Alignment explanation
Indices: 13777858--13777902 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
13777848 TCTTATTTTG
* *
13777858 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
**
13777881 TTGATTTGTATATTGTTGATTT
1 TTGATTTGTATATAATTGATTT
13777903 CAAATCTCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:13778105 original size:23 final size:23
Alignment explanation
Indices: 13778057--13778106 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
13778047 ATTTGTTATT
** *
13778057 TTATTTTTTTATTATTAAATTAA
1 TTATTTTAATATTATTAAACTAA
13778080 TTATTTTAATATTATTAATACT-A
1 TTATTTTAATATTATTAA-ACTAA
13778103 TTAT
1 TTAT
13778107 GTGGCATCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 21 0.91
24 2 0.09
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (23 bp):
TTATTTTAATATTATTAAACTAA
Found at i:13778391 original size:21 final size:20
Alignment explanation
Indices: 13778367--13778405 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
13778357 ATTCACATAC
*
13778367 ACATATATTTTTCTTATATGT
1 ACATATATATTT-TTATATGT
13778388 ACATATATATTTTTATAT
1 ACATATATATTTTTATAT
13778406 TTTATGATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.33, C:0.08, G:0.03, T:0.56
Consensus pattern (20 bp):
ACATATATATTTTTATATGT
Found at i:13783583 original size:10 final size:9
Alignment explanation
Indices: 13783568--13783618 Score: 57
Period size: 9 Copynumber: 5.4 Consensus size: 9
13783558 TCCAATTCAA
13783568 AAAAAAATCC
1 AAAAAAA-CC
13783578 AAAAAAACAC
1 AAAAAAAC-C
13783588 AAAAAAACC
1 AAAAAAACC
**
13783597 AAAAAAAAG
1 AAAAAAACC
*
13783606 AAAAAAATC
1 AAAAAAACC
13783615 AAAA
1 AAAA
13783619 TCAAAATTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
9 20 0.56
10 16 0.44
ACGTcount: A:0.80, C:0.14, G:0.02, T:0.04
Consensus pattern (9 bp):
AAAAAAACC
Found at i:13783624 original size:20 final size:19
Alignment explanation
Indices: 13783568--13783644 Score: 59
Period size: 20 Copynumber: 3.9 Consensus size: 19
13783558 TCCAATTCAA
*
13783568 AAAAAAATCCAAAA-AAACAC
1 AAAAAAAT-CAAAATAAA-AG
*
13783588 AAAAAAACCAAAA-AAAAG
1 AAAAAAATCAAAATAAAAG
*
13783606 AAAAAAATCAAAATCAAAAT
1 AAAAAAATCAAAAT-AAAAG
* *
13783626 TAAAAAATAAAAATGAAAA
1 AAAAAAATCAAAAT-AAAA
13783645 AAGAAAAGGA
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
18 13 0.27
19 8 0.17
20 27 0.56
ACGTcount: A:0.78, C:0.10, G:0.03, T:0.09
Consensus pattern (19 bp):
AAAAAAATCAAAATAAAAG
Found at i:13785014 original size:44 final size:44
Alignment explanation
Indices: 13784942--13785269 Score: 403
Period size: 44 Copynumber: 7.9 Consensus size: 44
13784932 AGTGGAATAG
* *
13784942 GTGAATCCTATCTCCTTGGTCAGCAGTGGAATAGGTTGAAGATC
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
* * *
13784986 GTGAGTCCTATCTCCCTAGTCAGTAGTGG-A-A---T--AG---
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
13785020 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
*
13785064 GTGAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
*
13785108 GT-AAGTCATATCTCCCTGGTCAGCAGTGG-A-A---T--AG---
1 GTGAA-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
*
13785142 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATTGGTTGAAGATT
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
13785186 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
*
13785230 GTGAATCCTATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAA
1 GTGAATCCTATCTCCCTG-GTCAGCAGTGGAATAGGTTGAA
13785270 AATTACAAAT
Statistics
Matches: 247, Mismatches: 14, Indels: 46
0.80 0.05 0.15
Matches are distributed among these distances:
34 51 0.21
35 4 0.02
36 1 0.00
37 4 0.02
39 4 0.02
41 4 0.02
42 2 0.01
43 3 0.01
44 173 0.70
45 1 0.00
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (44 bp):
GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
Found at i:13785045 original size:78 final size:78
Alignment explanation
Indices: 13784916--13785265 Score: 371
Period size: 78 Copynumber: 4.4 Consensus size: 78
13784906 CACAAAGCTT
*
13784916 TATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCTATCTCCTTGGTCAGCAGTGGAATAGGTTGA
1 TATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGA
*
13784981 AGATCGTGAGTCC
66 AGATTGTGAGTCC
* *
13784994 TATCTCCCTAGTCAGTAGTGGAATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGA
1 TATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGA
13785059 AGATTGTGAGTCC
66 AGATTGTGAGTCC
*
13785072 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGG
1 TATCTCCCTGGTCAGCAGTGGAATA----G--G--TG-AA-TCCTATCTCCCTGGTCAGCAGTGG
13785137 AATAGG-T---GA-----A-TCC
56 AATAGGTTGAAGATTGTGAGTCC
13785150 TATCTCCCTGGTCAGCAGTGGAATTGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGG
1 TATCTCCCTGGTCAGCAGTGGAA-----T--AG---GTGAATCCTATCTCCCTGGTCAGCAGTGG
*
13785215 AATAGGTTGAAGATTGTGAATCC
56 AATAGGTTGAAGATTGTGAGTCC
*
13785238 TATCTCCCTGAG-CAGCAGTGGAGTAGGT
1 TATCTCCCTG-GTCAGCAGTGGAATAGGT
13785266 TGAAAATTAC
Statistics
Matches: 232, Mismatches: 11, Indels: 58
0.77 0.04 0.19
Matches are distributed among these distances:
78 154 0.66
79 4 0.02
80 2 0.01
81 3 0.01
82 4 0.02
83 2 0.01
84 3 0.01
85 1 0.00
86 2 0.01
87 4 0.02
88 52 0.22
89 1 0.00
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (78 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGA
AGATTGTGAGTCC
Found at i:13785164 original size:122 final size:122
Alignment explanation
Indices: 13784942--13785265 Score: 535
Period size: 122 Copynumber: 2.7 Consensus size: 122
13784932 AGTGGAATAG
* * * *
13784942 GTGAATCCTATCTCCTTGGTCAGCAGTGGAATAGGTTGAAGATCGTGAGTCCTATCTCCCTAGTC
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTC
*
13785007 AGTAGTGGAATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
66 AGCAGTGGAATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
* *
13785064 GTGAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTC
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTC
*
13785129 AGCAGTGGAATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATTGGTTGAAGATT
66 AGCAGTGGAATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
13785186 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGAG
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCTG-G
*
13785250 -CAGCAGTGGAGTAGGT
64 TCAGCAGTGGAATAGGT
13785266 TGAAAATTAC
Statistics
Matches: 189, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
122 186 0.98
123 3 0.02
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (122 bp):
GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTC
AGCAGTGGAATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
Found at i:13785296 original size:44 final size:44
Alignment explanation
Indices: 13785145--13785506 Score: 173
Period size: 44 Copynumber: 8.2 Consensus size: 44
13785135 GGAATAGGTG
* * * * **
13785145 AATCCTATCTCCCT-GGTCAGCAGTGGAATTGGTTGAAGATTGTG
1 AATCTTATCTCCCTAAG-CAGCAGTGGAGTAGGTTGAAGATTGCA
* * * **
13785189 AATCCTATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTG
1 AATCTTATCTCCCTAAG-CAGCAGTGGAGTAGGTTGAAGATTGCA
* * * *
13785233 AATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACA
1 AATCTTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAGATTGCA
* * * * ** *
13785277 AATCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGACGGCG
1 AATCTTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAGATTGCA
* * * * * * * * *
13785321 AATATTATCTTCCC-AAGGTAGTAGAGAAGCAGATTTAAGCCACTAGC-
1 AATCTTATC-TCCCTAA-GCAGCAGTGGAGTAGGTTGAAG--A-TTGCA
* * * *
13785368 --T-TTATTTCCCTGAGCAGCTA-TGGAATAGGTTGAAGATTGTA
1 AATCTTATCTCCCTAAGCAGC-AGTGGAGTAGGTTGAAGATTGCA
* * * * *
13785409 GACCTTATCTCCCTAAGAAGCAGTGGAGTAGGTTGAAAATTACA
1 AATCTTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAGATTGCA
* * * * * * *
13785453 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCG
1 AATCTTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAGATTGCA
13785497 AATCTTATCT
1 AATCTTATCT
13785507 TCCCAAGGTA
Statistics
Matches: 248, Mismatches: 57, Indels: 26
0.75 0.17 0.08
Matches are distributed among these distances:
40 2 0.01
41 1 0.00
43 17 0.07
44 202 0.81
45 23 0.09
47 1 0.00
48 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.28
Consensus pattern (44 bp):
AATCTTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAGATTGCA
Found at i:13785302 original size:88 final size:88
Alignment explanation
Indices: 13785142--13785479 Score: 224
Period size: 88 Copynumber: 3.8 Consensus size: 88
13785132 AGTGGAATAG
* * * * *** * *
13785142 GTGAATCCTATCTCCCT-GGTCAGCAGTGGAATTGGTTGAAGATTGTGAATCCTATCTCCCT-GG
1 GTGAATCCTATCTCCCTAAG-CAGCAGTGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAG
*
13785205 TCAGCAGTGGAATAGGTTGAAGATT
65 -CAGTAGTGGAATAGGTTGAAGATT
*
13785230 GTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAGC
1 GTGAATCCTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAGC
** * * **
13785295 AGTAGTGGAGCAGATAGAAGACG
66 AGTAGTGGAATAGGTTGAAGATT
* ** * * * * * * * *** * * * *
13785318 GCGAATATTATCTTCCC-AAGGTAGTAGAGAAGCAGATT-TAAGCCAC-TAGCTTTATTTCCCTG
1 GTGAATCCTATC-TCCCTAA-GCAGCAGTGGAGTAGGTTGAAAATTACAAATC-TTATCTCCCTA
13785380 AGCAGCTA-TGGAATAGGTTGAAGATT
63 AGCAG-TAGTGGAATAGGTTGAAGATT
* *
13785406 GT-AGA-CCTTATCTCCCTAAGAAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAA
1 GTGA-ATCC-TATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAA
13785469 GCAGTAGTGGA
64 GCAGTAGTGGA
13785480 GCAGATCGAA
Statistics
Matches: 181, Mismatches: 57, Indels: 24
0.69 0.22 0.09
Matches are distributed among these distances:
87 21 0.12
88 138 0.76
89 22 0.12
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (88 bp):
GTGAATCCTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAGC
AGTAGTGGAATAGGTTGAAGATT
Found at i:13785507 original size:176 final size:176
Alignment explanation
Indices: 13785194--13785601 Score: 597
Period size: 176 Copynumber: 2.3 Consensus size: 176
13785184 TTGTGAATCC
** * *
13785194 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-GAATCC-TATCTCCCTGAGCAGCAGT
1 TATCTCCCTGAACAGCAGTGGAATAGGTTGAAGATTGTAG-A-CCTTATCTCCCTAAGAAGCAGT
13785257 GGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGACGGCGA
64 GGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGACGGCGA
* *
13785322 ATATTATCTTCCCAAGGTAGTAGAGAAGCAGATTTAAGCCACTAGCTT
129 ATATTATCTTCCCAAGGTAGTAGAGAAGCAAATTTAAGCCACTAGCCT
* *
13785370 TATTTCCCTGAGCAGCTA-TGGAATAGGTTGAAGATTGTAGACCTTATCTCCCTAAGAAGCAGTG
1 TATCTCCCTGAACAGC-AGTGGAATAGGTTGAAGATTGTAGACCTTATCTCCCTAAGAAGCAGTG
* * *
13785434 GAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAA
65 GAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGACGGCGAA
* *
13785499 TCTTATCTTCCCAAGGTAGTAGGGAAGCAAATTTAAGCCACTAGCCT
130 TATTATCTTCCCAAGGTAGTAGAGAAGCAAATTTAAGCCACTAGCCT
* * ** **
13785546 TATCTCCCTGAACAGCAGTGGAGTAGGTTGAAAATTAAAGATTTTATCTCCCTAAG
1 TATCTCCCTGAACAGCAGTGGAATAGGTTGAAGATTGTAGACCTTATCTCCCTAAG
13785602 TTGCAATGGA
Statistics
Matches: 208, Mismatches: 20, Indels: 8
0.88 0.08 0.03
Matches are distributed among these distances:
175 3 0.01
176 203 0.98
177 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (176 bp):
TATCTCCCTGAACAGCAGTGGAATAGGTTGAAGATTGTAGACCTTATCTCCCTAAGAAGCAGTGG
AGTAGGTTGAAAATTACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGACGGCGAAT
ATTATCTTCCCAAGGTAGTAGAGAAGCAAATTTAAGCCACTAGCCT
Found at i:13785548 original size:88 final size:88
Alignment explanation
Indices: 13785280--13785568 Score: 241
Period size: 88 Copynumber: 3.3 Consensus size: 88
13785270 AATTACAAAT
* *
13785280 CTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGACGGCGAATATTATCTTCCCAAGGTAGTAG
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGATGGCGAATCTTATCTTCCCAAGGTAGTAG
*
13785345 AGAAGCAGATTTAAGCCACTAGC
66 GGAAGCAGATTTAAGCCACTAGC
* * * ** * * * * * *
13785368 TTTATTTCCCTGAGCAGCTA-TGGAATAGGTTGAAGATTG-TAGACCTTATC-TCCCTAA-GAAG
1 CTTATCTCCCTAAGCAG-TAGTGGAGCAGATAGAAGATGGCGA-ATCTTATCTTCCC-AAGGTAG
* * * * *** *
13785429 CAGTGG-AGTAGGTTGAAAATTAC-AGAT
63 TAG-GGAAGCAGATT-TAAGCCACTAG-C
*
13785456 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCAAGGTAGTAG
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGATGGCGAATCTTATCTTCCCAAGGTAGTAG
*
13785521 GGAAGCAAATTTAAGCCACTAGC
66 GGAAGCAGATTTAAGCCACTAGC
*
13785544 CTTATCTCCCTGAA-CAGCAGTGGAG
1 CTTATCTCCCT-AAGCAGTAGTGGAG
13785569 TAGGTTGAAA
Statistics
Matches: 145, Mismatches: 43, Indels: 26
0.68 0.20 0.12
Matches are distributed among these distances:
87 20 0.14
88 104 0.72
89 21 0.14
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.26
Consensus pattern (88 bp):
CTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGATGGCGAATCTTATCTTCCCAAGGTAGTAG
GGAAGCAGATTTAAGCCACTAGC
Found at i:13786316 original size:22 final size:22
Alignment explanation
Indices: 13786256--13786313 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 22
13786246 AATCTTCAAG
13786256 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
13786275 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
13786297 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
13786314 GATTTAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.39
22 8 0.24
23 12 0.36
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:13786559 original size:23 final size:23
Alignment explanation
Indices: 13786515--13786559 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
13786505 TCTTATTTTG
* *
13786515 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
*
13786538 TTGATTTGTATATTATTGATTT
1 TTGATTTGTATATAATTGATTT
13786560 CAAATCTCTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.24, C:0.00, G:0.13, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:13789550 original size:22 final size:23
Alignment explanation
Indices: 13789520--13789565 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
13789510 TTTTTCCTAA
13789520 TATGTAAATTGGATTGAAA-TGAG
1 TATGTAAATTGGATT-AAATTGAG
*
13789543 TATG-AAATTGTATTAAATTGAG
1 TATGTAAATTGGATTAAATTGAG
13789565 T
1 T
13789566 TAATTTACTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 3 0.14
22 14 0.67
23 4 0.19
ACGTcount: A:0.39, C:0.00, G:0.22, T:0.39
Consensus pattern (23 bp):
TATGTAAATTGGATTAAATTGAG
Found at i:13792604 original size:14 final size:14
Alignment explanation
Indices: 13792577--13792619 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
13792567 TAGCCATGCG
13792577 TTCTC-CTTTGCTTT
1 TTCTCTCTTT-CTTT
13792591 TTCTCTCTTTCTTT
1 TTCTCTCTTTCTTT
*
13792605 TTCTTTCTTTTCTTT
1 TTCTCTC-TTTCTTT
13792620 GATAAATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 15 0.58
15 11 0.42
ACGTcount: A:0.00, C:0.26, G:0.02, T:0.72
Consensus pattern (14 bp):
TTCTCTCTTTCTTT
Found at i:13795687 original size:25 final size:24
Alignment explanation
Indices: 13795653--13795738 Score: 84
Period size: 25 Copynumber: 3.5 Consensus size: 24
13795643 GACACACCAT
*
13795653 AGCTCGTATGAGCTTCCTGATTTAC
1 AGCTCGTATGAGCTT-CTGATTCAC
*
13795678 AGCTCGTATGATCTTCTCGATTCAC
1 AGCTCGTATGAGCTTCT-GATTCAC
* * *
13795703 AGCTCATGA-GAGCATACTGATTCAT
1 AGCTCGT-ATGAGC-TTCTGATTCAC
13795728 AGCTCGTATGA
1 AGCTCGTATGA
13795739 ACATACATGA
Statistics
Matches: 50, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
24 3 0.06
25 43 0.86
26 4 0.08
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (24 bp):
AGCTCGTATGAGCTTCTGATTCAC
Found at i:13802050 original size:25 final size:25
Alignment explanation
Indices: 13802013--13802072 Score: 93
Period size: 25 Copynumber: 2.4 Consensus size: 25
13802003 GTAGACACAC
*
13802013 CACAGCTCATATGAGCTTCCCGATT
1 CACAGCTCGTATGAGCTTCCCGATT
**
13802038 TGCAGCTCGTATGAGCTTCCCGATT
1 CACAGCTCGTATGAGCTTCCCGATT
13802063 CACAGCTCGT
1 CACAGCTCGT
13802073 GAAAGCATAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.20, C:0.32, G:0.20, T:0.28
Consensus pattern (25 bp):
CACAGCTCGTATGAGCTTCCCGATT
Found at i:13807964 original size:37 final size:36
Alignment explanation
Indices: 13807882--13807953 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
13807872 TTTTTTGTCT
*
13807882 AAACTCATTTTTTGAGCTTATATTTTTGCCCAAAAC
1 AAACCCATTTTTTGAGCTTATATTTTTGCCCAAAAC
13807918 AAACCCATTTTTTG-GACTTATATTTTTGCCCAAAAC
1 AAACCCATTTTTTGAG-CTTATATTTTTGCCCAAAAC
13807954 CTCTCACATT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
35 1 0.03
36 33 0.97
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.40
Consensus pattern (36 bp):
AAACCCATTTTTTGAGCTTATATTTTTGCCCAAAAC
Found at i:13811035 original size:11 final size:11
Alignment explanation
Indices: 13811021--13811071 Score: 57
Period size: 11 Copynumber: 4.6 Consensus size: 11
13811011 TCTTTTGTTG
*
13811021 TTATTTCGCTA
1 TTATTTTGCTA
13811032 TTATTTTGCTA
1 TTATTTTGCTA
* **
13811043 TCATTTTATTA
1 TTATTTTGCTA
*
13811054 TTATATTGCTA
1 TTATTTTGCTA
13811065 TTATTTT
1 TTATTTT
13811072 ATTGTTATTA
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
11 31 1.00
ACGTcount: A:0.22, C:0.10, G:0.06, T:0.63
Consensus pattern (11 bp):
TTATTTTGCTA
Found at i:13811055 original size:22 final size:22
Alignment explanation
Indices: 13811030--13811080 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
13811020 GTTATTTCGC
13811030 TATTATTTTGCTATCATTTTAT
1 TATTATTTTGCTATCATTTTAT
* *
13811052 TATTATATTGCTATTATTTTAT
1 TATTATTTTGCTATCATTTTAT
*
13811074 TGTTATT
1 TATTATT
13811081 ATTTGAATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.24, C:0.06, G:0.06, T:0.65
Consensus pattern (22 bp):
TATTATTTTGCTATCATTTTAT
Found at i:13811084 original size:14 final size:14
Alignment explanation
Indices: 13811048--13811084 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
13811038 TGCTATCATT
*
13811048 TTATTATTATATTG
1 TTATTATTTTATTG
*
13811062 CTATTATTTTATTG
1 TTATTATTTTATTG
13811076 TTATTATTT
1 TTATTATTT
13811085 GAATATTGTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.24, C:0.03, G:0.05, T:0.68
Consensus pattern (14 bp):
TTATTATTTTATTG
Found at i:13812109 original size:8 final size:8
Alignment explanation
Indices: 13812098--13812141 Score: 70
Period size: 8 Copynumber: 5.5 Consensus size: 8
13812088 TAAAAATTAC
13812098 AAAAAAAT
1 AAAAAAAT
13812106 AAAAAAAT
1 AAAAAAAT
* *
13812114 TATAAAAT
1 AAAAAAAT
13812122 AAAAAAAT
1 AAAAAAAT
13812130 AAAAAAAT
1 AAAAAAAT
13812138 AAAA
1 AAAA
13812142 TCAACAAATA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 32 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (8 bp):
AAAAAAAT
Found at i:13812133 original size:21 final size:21
Alignment explanation
Indices: 13812090--13812151 Score: 56
Period size: 21 Copynumber: 3.0 Consensus size: 21
13812080 AAGACTGATA
* *
13812090 AAAATTACAAAA-AAATAAA-
1 AAAATTATAAAATAAAAAAAT
13812109 AAAATTATAAAATAAAAAAAT
1 AAAATTATAAAATAAAAAAAT
** * *
13812130 AAAAAAATAAAATCAACAAAT
1 AAAATTATAAAATAAAAAAAT
13812151 A
1 A
13812152 TTAAAAATAT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
19 11 0.31
20 6 0.17
21 18 0.51
ACGTcount: A:0.77, C:0.05, G:0.00, T:0.18
Consensus pattern (21 bp):
AAAATTATAAAATAAAAAAAT
Found at i:13812157 original size:21 final size:21
Alignment explanation
Indices: 13812098--13812160 Score: 63
Period size: 21 Copynumber: 2.8 Consensus size: 21
13812088 TAAAAATTAC
13812098 AAAAAAATAAAAAAATTATAAAAT
1 AAAAAAAT-AAAAAA--ATAAAAT
13812122 AAAAAAATAAAAAAATAAAAT
1 AAAAAAATAAAAAAATAAAAT
* * *
13812143 CAACAAATATTAAAAATA
1 AAAAAAATA-AAAAAATA
13812161 TTAAAATTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
21 14 0.40
22 7 0.20
23 6 0.17
24 8 0.23
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (21 bp):
AAAAAAATAAAAAAATAAAAT
Found at i:13814613 original size:29 final size:30
Alignment explanation
Indices: 13814552--13814615 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 30
13814542 TGAAATTAAT
*
13814552 AATATATTAATATATATATGCATACTAAAA
1 AATATATTAATATATATATGCATAATAAAA
13814582 AATATATT-ATATATAT-T-CATATATACAAA
1 AATATATTAATATATATATGCATA-ATA-AAA
13814611 AATAT
1 AATAT
13814616 GAGATATTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
27 4 0.13
28 3 0.10
29 16 0.52
30 8 0.26
ACGTcount: A:0.53, C:0.06, G:0.02, T:0.39
Consensus pattern (30 bp):
AATATATTAATATATATATGCATAATAAAA
Found at i:13816458 original size:27 final size:29
Alignment explanation
Indices: 13816428--13816494 Score: 77
Period size: 27 Copynumber: 2.4 Consensus size: 29
13816418 GAATTCTTTG
13816428 AAAATAATAAAAATTG-TAAAAAATAAA-
1 AAAATAATAAAAATTGTTAAAAAATAAAT
* **
13816455 AAAAT-ATTAAAATTGTTATGAAATAAAT
1 AAAATAATAAAAATTGTTAAAAAATAAAT
13816483 AATAATAATAAA
1 AA-AATAATAAA
13816495 TAGGAGAGCA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
26 9 0.28
27 14 0.44
28 2 0.06
29 3 0.09
30 4 0.12
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.28
Consensus pattern (29 bp):
AAAATAATAAAAATTGTTAAAAAATAAAT
Found at i:13819781 original size:13 final size:14
Alignment explanation
Indices: 13819765--13819798 Score: 52
Period size: 13 Copynumber: 2.4 Consensus size: 14
13819755 AATAAATATA
13819765 TATTTTTT-ATTTT
1 TATTTTTTAATTTT
13819778 TATTTTTTAATTTT
1 TATTTTTTAATTTT
13819792 TAATTTT
1 T-ATTTT
13819799 AAAATACTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 8 0.42
14 6 0.32
15 5 0.26
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (14 bp):
TATTTTTTAATTTT
Found at i:13820414 original size:9 final size:9
Alignment explanation
Indices: 13820400--13820433 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
13820390 TTAATTGGGA
13820400 AATTAATTT
1 AATTAATTT
*
13820409 AGTTAATTT
1 AATTAATTT
*
13820418 AATTAATTA
1 AATTAATTT
13820427 AATTAAT
1 AATTAAT
13820434 AAATTAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (9 bp):
AATTAATTT
Found at i:13822749 original size:20 final size:20
Alignment explanation
Indices: 13822721--13822761 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
13822711 CTTGTACGGG
13822721 TTTGCACTTTGGTGCCTCTA
1 TTTGCACTTTGGTGCCTCTA
* *
13822741 TTTGTACTTTGGTGTCTCTA
1 TTTGCACTTTGGTGCCTCTA
13822761 T
1 T
13822762 ACAACACTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.10, C:0.20, G:0.20, T:0.51
Consensus pattern (20 bp):
TTTGCACTTTGGTGCCTCTA
Found at i:13827126 original size:26 final size:24
Alignment explanation
Indices: 13827088--13827138 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 24
13827078 TTTATAATTT
* *
13827088 TTTTTATAATTTATTAGTTTTTTA
1 TTTTTATAATTTATAAGTTTATTA
13827112 TTTTTATAATTTTTATAAGTTTATTA
1 TTTTTATAA--TTTATAAGTTTATTA
13827138 T
1 T
13827139 AAAAAATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 9 0.39
26 14 0.61
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (24 bp):
TTTTTATAATTTATAAGTTTATTA
Found at i:13827140 original size:11 final size:9
Alignment explanation
Indices: 13826990--13827140 Score: 60
Period size: 9 Copynumber: 16.0 Consensus size: 9
13826980 CCAATTCAAG
*
13826990 TTTTTATTA
1 TTTTTATAA
13826999 TATTTTATAA
1 T-TTTTATAA
*
13827009 TTTTTATGA
1 TTTTTATAA
13827018 TTTTTATAGAA
1 TTTTTAT--AA
* * *
13827029 TTCTAATACG
1 TTTTTATA-A
13827039 TTTTTATAAA
1 TTTTTAT-AA
*
13827049 ATTTTA-AA
1 TTTTTATAA
13827057 TATTTTATTAA
1 T-TTTTA-TAA
* *
13827068 CTTATAT-A
1 TTTTTATAA
*
13827076 TATTTATAA
1 TTTTTATAA
13827085 TTTTTTTTATAA
1 ---TTTTTATAA
* *
13827097 TTTAT-TAG
1 TTTTTATAA
13827105 TTTTT-T-A
1 TTTTTATAA
13827112 TTTTTATAA
1 TTTTTATAA
13827121 TTTTTATAA
1 TTTTTATAA
13827130 GTTTATTATAA
1 -TTT-TTATAA
13827141 AAAATTAATA
Statistics
Matches: 105, Mismatches: 21, Indels: 30
0.67 0.13 0.19
Matches are distributed among these distances:
7 5 0.05
8 15 0.14
9 37 0.35
10 25 0.24
11 15 0.14
12 8 0.08
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (9 bp):
TTTTTATAA
Found at i:13837984 original size:18 final size:19
Alignment explanation
Indices: 13837944--13837984 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 19
13837934 CGAATTAAAT
13837944 TATT-ACCAGATGAGATTA
1 TATTCACCAGATGAGATTA
*
13837962 -GTTCACCA-ATGAGATTA
1 TATTCACCAGATGAGATTA
13837979 TATTCA
1 TATTCA
13837985 ATGATATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 4
0.76 0.08 0.16
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.34
Consensus pattern (19 bp):
TATTCACCAGATGAGATTA
Found at i:13844961 original size:46 final size:45
Alignment explanation
Indices: 13844888--13845342 Score: 554
Period size: 46 Copynumber: 10.6 Consensus size: 45
13844878 TTTGAGTACT
*
13844888 TCTGATCAAGTGATAAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGA-CAAAGTGATAAGTGGTAGC-TTAGCTACACTTA
13844935 TCTGATCAAGTGACAAAGTGATAA---GT-GC-TA--T--ACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTA
*
13844971 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAG-CTTAGCTACACTTA
*
13845017 TCTGATCAAGTGAGAAAGTGATAAGTGGTAGCATTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-TTAGCTACACTTA
*
13845063 TCTGATCAAGTGAAAAAGTGAT-A-----AG--T-GCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTA
*
13845099 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-TTAGCTACACTTA
13845145 TCTGATCAAGTGACAAAGTGATAA---GT-GC-TA--T--ACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTA
*
13845181 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAG-CTTAGCTACACTTA
* *
13845227 TCTGATCAAGTGAGAAAGTGATAAGTGGTAGCCTTAGCTACTCTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAG-CTTAGCTACACTTA
*
13845273 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTA
*
13845318 TCTGATC-AGGGAC-AAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
13845343 ATCATATGTA
Statistics
Matches: 361, Mismatches: 16, Indels: 66
0.81 0.04 0.15
Matches are distributed among these distances:
36 88 0.24
37 2 0.01
38 2 0.01
39 2 0.01
40 8 0.02
41 2 0.01
42 10 0.03
43 16 0.04
44 7 0.02
45 22 0.06
46 189 0.52
47 13 0.04
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (45 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTA
Found at i:13844997 original size:82 final size:86
Alignment explanation
Indices: 13844888--13845342 Score: 438
Period size: 82 Copynumber: 5.3 Consensus size: 86
13844878 TTTGAGTACT
13844888 TCTGATCAAGTGATAAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAG
1 TCTGATCAAGTGA-AAAAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATCAAGTGACAAAG
13844953 TGATAA-GT-GC-TA-T-ACTTA
64 TGATAAGGTAGCTTACTAACTTA
* * *
13844971 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCCTTAGCTACACTTATCTGATCAAGTGAGAAAGT
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAG-CTTAGCTACACTTATCTGATCAAGTGACAAAGT
13845036 GATAAGTGGTAGCATTAGCTACACTTA
65 GATAA--GGTAGC-TTA-CTA-ACTTA
*
13845063 TCTGATCAAGTGAAAAAGTGAT-A-----AG--T-GCTACACTTATCTGATCAAGAGACAAAGTG
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAAGTGACAAAGTG
13845119 ATAAGTGGTAGCTTTAGCTACACTTA
66 ATAA--GGTAGC-TTA-CTA-ACTTA
*
13845145 TCTGATCAAGTGACAAAGTGATAA---GT-GC-TA--T--ACTTATCTGATCAAGTGACAAAGTG
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAAGTGACAAAGTG
13845201 ATAAGTGTTAGCCTTAGCTACACTTA
66 ATAAG-G-TAG-CTTA-CTA-ACTTA
* *
13845227 TCTGATCAAGTGAGAAAGTGATAAGTGGTAGCCTTAGCTACTCTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAG-CTTAGCTACACTTATCTGATCAAGTGACAAAGT
*
13845292 GATAAGTGGTAGCCTAGCTACACTTA
65 GATAA--GGTAGCTTA-CTA-ACTTA
* *
13845318 TCTGATC-AG-GGACAAGTGATAAGTG
1 TCTGATCAAGTGAAAAAGTGATAAGTG
13845343 ATCATATGTA
Statistics
Matches: 326, Mismatches: 15, Indels: 56
0.82 0.04 0.14
Matches are distributed among these distances:
80 1 0.00
81 1 0.00
82 193 0.59
83 17 0.05
84 2 0.01
85 5 0.02
86 5 0.02
87 1 0.00
88 4 0.01
89 13 0.04
90 4 0.01
91 21 0.06
92 57 0.17
93 1 0.00
94 1 0.00
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (86 bp):
TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAAGTGACAAAGTG
ATAAGGTAGCTTACTAACTTA
Found at i:13845074 original size:128 final size:127
Alignment explanation
Indices: 13844888--13845342 Score: 617
Period size: 128 Copynumber: 3.6 Consensus size: 127
13844878 TTTGAGTACT
*
13844888 TCTGATCAAGTGATAAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAG
1 TCTGATCAAGTGA-CAAAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATCAAGTGACAAAG
*
13844953 TGATAAGTGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGTTAGCCTTAGCTACACTTA
64 TGATAAGTGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
* *
13845017 TCTGATCAAGTGAGAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATCAAGTGACAAAGT
* * *
13845082 GATAAGTGCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
65 GATAAGTGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
13845145 TCTGATCAAGTGACAAAGTGATAA---GT-GC-TA--T--ACTTATCTGATCAAGTGACAAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAAGTGACAAAGTG
*
13845201 ATAAGTGTTAGCCTTAGCTACACTTATCTGATCAAGTGAGAAAGTGATAAGTGGTAGCCTTAGCT
66 ATAA--G-T-G-C-TA--T--ACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCT
*
13845266 ACTCTTA
121 ACACTTA
* *
13845273 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTATCTGATC-AGGGAC-AAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAAGTGACAAAGTG
13845336 ATAAGTG
66 ATAAGTG
13845343 ATCATATGTA
Statistics
Matches: 292, Mismatches: 15, Indels: 36
0.85 0.04 0.10
Matches are distributed among these distances:
118 28 0.10
120 2 0.01
121 1 0.00
122 3 0.01
123 1 0.00
124 4 0.01
125 2 0.01
128 202 0.69
129 13 0.04
131 3 0.01
132 3 0.01
133 3 0.01
135 10 0.03
136 5 0.02
137 12 0.04
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (127 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAAGTGACAAAGTG
ATAAGTGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
Found at i:13846344 original size:21 final size:19
Alignment explanation
Indices: 13846318--13846371 Score: 56
Period size: 21 Copynumber: 2.7 Consensus size: 19
13846308 ATACCAGACT
13846318 AAAGTATCAATACTTGATACC
1 AAAGTATCAATACTT-ATA-C
* *
13846339 AAAGTATCGATA-TTTTAC
1 AAAGTATCAATACTTATAC
13846357 AAAGGTATCAATACT
1 AAA-GTATCAATACT
13846372 ATTGAACTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
18 4 0.14
19 10 0.36
20 3 0.11
21 11 0.39
ACGTcount: A:0.43, C:0.15, G:0.11, T:0.31
Consensus pattern (19 bp):
AAAGTATCAATACTTATAC
Found at i:13851536 original size:21 final size:21
Alignment explanation
Indices: 13851488--13851536 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
13851478 GAACCCCAAA
* *
13851488 GGCTGAATAGAAGCACATAAG
1 GGCTAAATAGAAACACATAAG
* *
13851509 TGCTAAATAGAAACCCATAAG
1 GGCTAAATAGAAACACATAAG
*
13851530 GGTTAAA
1 GGCTAAA
13851537 CGGAAGCTTG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.22, T:0.18
Consensus pattern (21 bp):
GGCTAAATAGAAACACATAAG
Found at i:13851607 original size:42 final size:42
Alignment explanation
Indices: 13851517--13851617 Score: 112
Period size: 42 Copynumber: 2.4 Consensus size: 42
13851507 AGTGCTAAAT
* *** *
13851517 AGAAACCCATAAGGGTTAAACGGAAGCTTGTAATAGCTGAAC
1 AGAAACCCATAAGGGTTAAACAGAAGCTCAAAAGAGCTGAAC
* * *
13851559 AAAAACCCATAAGGGTTAAACAGAAGCTCAAAAGAGTTGAAT
1 AGAAACCCATAAGGGTTAAACAGAAGCTCAAAAGAGCTGAAC
* *
13851601 GGAAACCCATTAGGGTT
1 AGAAACCCATAAGGGTT
13851618 GAACGGAAAC
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.43, C:0.16, G:0.23, T:0.19
Consensus pattern (42 bp):
AGAAACCCATAAGGGTTAAACAGAAGCTCAAAAGAGCTGAAC
Found at i:13853294 original size:58 final size:57
Alignment explanation
Indices: 13853227--13853348 Score: 149
Period size: 57 Copynumber: 2.1 Consensus size: 57
13853217 ACAGAAATGG
* *
13853227 TGAAAATGGAGAAATAAGAAACAATTT-GAAAT-AATTATGGTTTTCTCTAAAATGAAAA
1 TGAAAATGGAGAAAT-AG-AACAATTTGGAAATGAA-TATGGTTTTCTCCAAAATAAAAA
* ** *
13853285 TGAATATGGAGAAATAGAATTATTTGGAAATGAATGTGGTTTTCTCCAAAATAAAAA
1 TGAAAATGGAGAAATAGAACAATTTGGAAATGAATATGGTTTTCTCCAAAATAAAAA
13853342 TGAAAAT
1 TGAAAAT
13853349 AACTTGAAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
56 6 0.11
57 33 0.60
58 16 0.29
ACGTcount: A:0.48, C:0.05, G:0.17, T:0.30
Consensus pattern (57 bp):
TGAAAATGGAGAAATAGAACAATTTGGAAATGAATATGGTTTTCTCCAAAATAAAAA
Found at i:13856147 original size:42 final size:42
Alignment explanation
Indices: 13856096--13856382 Score: 443
Period size: 42 Copynumber: 6.8 Consensus size: 42
13856086 GTTTACAAAC
* *
13856096 AAAAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
13856138 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
13856180 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
* *
13856222 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTGTAA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG-AA
* * * *
13856264 AAAAATGCCACTAAAGACCATGTTCTTTAGCGGCGCTTAGGA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
* *
13856306 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTA-AGG
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGA-A
*
13856348 GAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCG
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCG
13856383 TTTTTTTTAT
Statistics
Matches: 226, Mismatches: 16, Indels: 6
0.91 0.06 0.02
Matches are distributed among these distances:
41 3 0.01
42 220 0.97
43 3 0.01
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
Found at i:13856195 original size:84 final size:84
Alignment explanation
Indices: 13856096--13856420 Score: 456
Period size: 84 Copynumber: 3.9 Consensus size: 84
13856086 GTTTACAAAC
* *
13856096 AAAAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGT
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
13856161 TCTTTAGCGGCGCTTAGAA
66 TCTTTAGCGGCGCTTAGAA
*
13856180 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
*
13856245 TCTTTAGCGGCG-TTTGTAA
66 TCTTTAGCGGCGCTTAG-AA
* * *
13856264 AAAAATGCCACTAAAGACCATGTTCTTTAGCGGCGCTTAGGAAAAAACGCCGCTAAAGAACATGT
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
*
13856329 TCTTTAGCGGCGCTTA-AGG
66 TCTTTAGCGGCGCTTAGA-A
* * * **** * *
13856348 GAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTTTTATAATCGCCGCTAAAGAACATG
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCG-CTTAGAAAAAAACGCCGCTAAAGAACATG
13856413 TTCTTTAG
65 TTCTTTAG
13856421 TGGCATTTTT
Statistics
Matches: 216, Mismatches: 21, Indels: 7
0.89 0.09 0.03
Matches are distributed among these distances:
83 4 0.02
84 180 0.83
85 32 0.15
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (84 bp):
AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
TCTTTAGCGGCGCTTAGAA
Found at i:13856385 original size:126 final size:126
Alignment explanation
Indices: 13856096--13856461 Score: 459
Period size: 126 Copynumber: 2.9 Consensus size: 126
13856086 GTTTACAAAC
* * * * *
13856096 AAAAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAG-AAAAAAACGCCGCTAAAGATCATG
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTGTAAAAAAATGCCGCTAAAGAACATG
*
13856160 TTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
65 TTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
* *
13856222 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTGTAAAAAAATGCCACTAAAGACCATGT
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTGTAAAAAAATGCCGCTAAAGAACATGT
* *
13856287 TCTTTAGCGGCGCTTAGGAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTA-AGG
66 TCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGA-A
* * * *** *
13856348 GAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTTTTATAATCGCCGCTAAAGAACATG
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTGTAAAAAAAT-GCCGCTAAAGAACATG
* * **** * *
13856413 TTCTTTAGTGGC-ATTTTTTACAAACGCCGCAAAAGAACATGTTCTTTAG
65 TTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGTTCTTTAG
13856462 TGGCACTTTT
Statistics
Matches: 211, Mismatches: 26, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
125 4 0.02
126 182 0.86
127 25 0.12
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (126 bp):
AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTGTAAAAAAATGCCGCTAAAGAACATGT
TCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
Found at i:13856438 original size:84 final size:82
Alignment explanation
Indices: 13856096--13856461 Score: 419
Period size: 84 Copynumber: 4.4 Consensus size: 82
13856086 GTTTACAAAC
* * *
13856096 AAAAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGT
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
* **
13856161 TCTTTAGCGGCGCTTAGAA
66 TCTTTAGCGGC-ATT-TTA
13856180 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
*
13856245 TCTTTAGCGGCGTTTGTAA
66 TCTTTAGCGGCATTT-T-A
* * * *
13856264 AAAAATGCCACTAAAGACCATGTTCTTTAGCGGCGCTTAGGAAAAAACGCCGCTAAAGAACATGT
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
**
13856329 TCTTTAGCGGC-GCTTA
66 TCTTTAGCGGCATTTTA
* **** * *
13856345 AGGGAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTTTTATAATCGCCGCTAAAGAAC
1 A---AAAACGCCGCTAAAGATCATGTTCTTTAGCGGCG-CTTAGAAAAAAACGCCGCTAAAGAAC
* *
13856410 ATGTTCTTTAGTGGCATTTTTT
62 ATGTTCTTTAGCGGCA-TTTTA
* * *
13856432 ACAAACGCCGCAAAAGAACATGTTCTTTAG
1 AAAAACGCCGCTAAAGATCATGTTCTTTAG
13856462 TGGCACTTTT
Statistics
Matches: 245, Mismatches: 29, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
81 2 0.01
82 1 0.00
83 3 0.01
84 203 0.83
85 33 0.13
87 3 0.01
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (82 bp):
AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
TCTTTAGCGGCATTTTA
Found at i:13856561 original size:14 final size:14
Alignment explanation
Indices: 13856538--13856571 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
13856528 GCCCTCCTGT
*
13856538 AGCAAAATTTCAAA
1 AGCAACATTTCAAA
13856552 AGCAACATTTCAAA
1 AGCAACATTTCAAA
13856566 AGCAAC
1 AGCAAC
13856572 CAATAGCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.53, C:0.21, G:0.09, T:0.18
Consensus pattern (14 bp):
AGCAACATTTCAAA
Found at i:13856844 original size:21 final size:21
Alignment explanation
Indices: 13856797--13856852 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
13856787 TTGCTCTGCT
*
13856797 CTGCTTCTCTT-GCTGCAGCCT
1 CTGCTTC-CTTCGCTGCAGCCG
* *
13856818 CCGCTTCCTTCGCTGCAGTCG
1 CTGCTTCCTTCGCTGCAGCCG
*
13856839 CTGCTTCCCTCGCT
1 CTGCTTCCTTCGCT
13856853 TCCGCCTCTG
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 3 0.10
21 26 0.90
ACGTcount: A:0.04, C:0.43, G:0.20, T:0.34
Consensus pattern (21 bp):
CTGCTTCCTTCGCTGCAGCCG
Found at i:13861708 original size:18 final size:18
Alignment explanation
Indices: 13861685--13861996 Score: 75
Period size: 18 Copynumber: 18.0 Consensus size: 18
13861675 AATTGCAATG
13861685 GTAAGTTATGTAAGTTAT
1 GTAAGTTATGTAAGTTAT
13861703 GTAAGTTAAATGT-A-TTAT
1 GTAAGTT--ATGTAAGTTAT
13861721 GTAAGTTAAATGTAAG-T-T
1 GTAAGTT--ATGTAAGTTAT
*
13861739 GTAAGTTAT-TATGTATTAT
1 GTAAGTTATGTAAG--TTAT
13861758 GTAAG-T-TGTAAGTTAAAT
1 GTAAGTTATGTAAGTT--AT
*
13861776 GT-A-TTGTGTAAG-T-T
1 GTAAGTTATGTAAGTTAT
13861790 GTAAGTTAAATGT-A-TTAT
1 GTAAGTT--ATGTAAGTTAT
13861808 GTAAG-T-TGTAAGTTAT
1 GTAAGTTATGTAAGTTAT
*
13861824 -TATGTATTATGTAAG-T-T
1 GTAAG--TTATGTAAGTTAT
* *
13861841 GTAAGTTAT-TATGTATTGT
1 GTAAGTTATGTAAG--TTAT
13861860 GTAAG-T-TGTAAGTTAAAT
1 GTAAGTTATGTAAGTT--AT
* *
13861878 GT-A-TTATGTCAGTCAAAT
1 GTAAGTTATGTAAGT--TAT
13861896 GT-A-TTATGTAAG-T-T
1 GTAAGTTATGTAAGTTAT
13861910 GTAAGTTAAATGT-A-TTAT
1 GTAAGTT--ATGTAAGTTAT
13861928 GTAAG-T-TGTAAGTTAT
1 GTAAGTTATGTAAGTTAT
* *
13861944 -TATGTATTATGTAAGTAAT
1 GTAAG--TTATGTAAGTTAT
13861963 GTAAGTTAAATGT-A-TTAT
1 GTAAGTT--ATGTAAGTTAT
13861981 GTAAG-T-TGTAAGTTAT
1 GTAAGTTATGTAAGTTAT
13861997 TATGTATTAT
Statistics
Matches: 224, Mismatches: 16, Indels: 110
0.64 0.05 0.31
Matches are distributed among these distances:
14 15 0.07
15 17 0.08
16 26 0.12
17 15 0.07
18 109 0.49
19 31 0.14
20 11 0.05
ACGTcount: A:0.34, C:0.01, G:0.20, T:0.45
Consensus pattern (18 bp):
GTAAGTTATGTAAGTTAT
Found at i:13861733 original size:11 final size:9
Alignment explanation
Indices: 13861685--13861996 Score: 75
Period size: 7 Copynumber: 36.0 Consensus size: 9
13861675 AATTGCAATG
13861685 GTAAGTTAT
1 GTAAGTTAT
13861694 GTAAGTTAT
1 GTAAGTTAT
13861703 GTAAGTTAAAT
1 GTAAGTT--AT
13861714 GT-A-TTAT
1 GTAAGTTAT
13861721 GTAAGTTAAAT
1 GTAAGTT--AT
13861732 GTAAG-T-T
1 GTAAGTTAT
13861739 GTAAGTTAT
1 GTAAGTTAT
*
13861748 -TATGTATTAT
1 GTAAG--TTAT
13861758 GTAAG-T-T
1 GTAAGTTAT
13861765 GTAAGTTAAAT
1 GTAAGTT--AT
*
13861776 GT-A-TTGT
1 GTAAGTTAT
13861783 GTAAG-T-T
1 GTAAGTTAT
13861790 GTAAGTTAAAT
1 GTAAGTT--AT
13861801 GT-A-TTAT
1 GTAAGTTAT
13861808 GTAAG-T-T
1 GTAAGTTAT
13861815 GTAAGTTAT
1 GTAAGTTAT
*
13861824 -TATGTATTAT
1 GTAAG--TTAT
13861834 GTAAG-T-T
1 GTAAGTTAT
13861841 GTAAGTTAT
1 GTAAGTTAT
* *
13861850 -TATGTATTGT
1 GTAAG--TTAT
13861860 GTAAG-T-T
1 GTAAGTTAT
13861867 GTAAGTTAAAT
1 GTAAGTT--AT
13861878 GT-A-TTAT
1 GTAAGTTAT
* *
13861885 GTCAGTCAAAT
1 GTAAGT--TAT
13861896 GT-A-TTAT
1 GTAAGTTAT
13861903 GTAAG-T-T
1 GTAAGTTAT
13861910 GTAAGTTAAAT
1 GTAAGTT--AT
13861921 GT-A-TTAT
1 GTAAGTTAT
13861928 GTAAG-T-T
1 GTAAGTTAT
13861935 GTAAGTTAT
1 GTAAGTTAT
*
13861944 -TATGTATTAT
1 GTAAG--TTAT
*
13861954 GTAAGTAAT
1 GTAAGTTAT
13861963 GTAAGTTAAAT
1 GTAAGTT--AT
13861974 GT-A-TTAT
1 GTAAGTTAT
13861981 GTAAG-T-T
1 GTAAGTTAT
13861988 GTAAGTTAT
1 GTAAGTTAT
13861997 TATGTATTAT
Statistics
Matches: 229, Mismatches: 14, Indels: 120
0.63 0.04 0.33
Matches are distributed among these distances:
7 81 0.35
8 36 0.16
9 46 0.20
10 23 0.10
11 43 0.19
ACGTcount: A:0.34, C:0.01, G:0.20, T:0.45
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:13861785 original size:25 final size:25
Alignment explanation
Indices: 13861730--13862006 Score: 361
Period size: 25 Copynumber: 11.1 Consensus size: 25
13861720 TGTAAGTTAA
*
13861730 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-AATGTATT
13861756 ATGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTAAATGTATT
*
13861781 GTGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTAAATGTATT
*
13861806 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-AATGTATT
*
13861832 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-AATGTATT
*
13861858 GTGTAAGTTGTAAGTTAAATG---T
1 ATGTAAGTTGTAAGTTAAATGTATT
* *
13861880 AT-T-A--TGTCAGTCAAATGTATT
1 ATGTAAGTTGTAAGTTAAATGTATT
13861901 ATGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTAAATGTATT
*
13861926 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-AATGTATT
13861952 ATGTAAGTAATGTAAGTTAAATGTATT
1 ATGTAAGT--TGTAAGTTAAATGTATT
*
13861979 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-AATGTATT
13862005 AT
1 AT
13862007 TTAATAAAAT
Statistics
Matches: 225, Mismatches: 14, Indels: 24
0.86 0.05 0.09
Matches are distributed among these distances:
18 11 0.05
20 1 0.00
21 4 0.02
22 3 0.01
23 1 0.00
25 91 0.40
26 90 0.40
27 15 0.07
28 9 0.04
ACGTcount: A:0.33, C:0.01, G:0.20, T:0.46
Consensus pattern (25 bp):
ATGTAAGTTGTAAGTTAAATGTATT
Found at i:13861897 original size:120 final size:121
Alignment explanation
Indices: 13861772--13862006 Score: 402
Period size: 120 Copynumber: 1.9 Consensus size: 121
13861762 GTTGTAAGTT
*
13861772 AAATGTATTGTGTAAGTTGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATTATGTA
1 AAATGTATTATGTAAGTTGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATTATGTA
* *
13861837 AGT-TGTAAGTTATTATGTATTGTGTAAGTTGTAAGTTA-AATGTATTATGTCAGTC
66 AGTATGTAAGTTA-AATGTATTATGTAAGTTGTAAGTTATAATGTATTATGTCAGTC
13861892 AAATGTATTATGTAAGTTGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATTATGTA
1 AAATGTATTATGTAAGTTGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATTATGTA
*
13861957 AGTAATGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATTAT
66 AGT-ATGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATAATGTATTAT
13862007 TTAATAAAAT
Statistics
Matches: 108, Mismatches: 4, Indels: 4
0.93 0.03 0.03
Matches are distributed among these distances:
120 67 0.62
121 23 0.21
122 18 0.17
ACGTcount: A:0.34, C:0.01, G:0.20, T:0.46
Consensus pattern (121 bp):
AAATGTATTATGTAAGTTGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATTATGTA
AGTATGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATAATGTATTATGTCAGTC
Found at i:13861976 original size:53 final size:51
Alignment explanation
Indices: 13861730--13862006 Score: 410
Period size: 51 Copynumber: 5.5 Consensus size: 51
13861720 TGTAAGTTAA
13861730 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTATT
* * *
13861781 GTGTAAGTTGTAAGTTA-AATGTATTATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTA-AATGTATT
*
13861832 ATGTAAGTTGTAAGTTATTATGTATTGTGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTATT
* *
13861883 ATGTCA---GTCA---A--ATGTATTATGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTATT
13861926 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTAATGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGT--TGTAAGTTAAATGTATT
13861979 ATGTAAGTTGTAAGTTATTATGTATTAT
1 ATGTAAGTTGTAAGTTATTATGTATTAT
13862007 TTAATAAAAT
Statistics
Matches: 202, Mismatches: 12, Indels: 22
0.86 0.05 0.09
Matches are distributed among these distances:
43 36 0.18
45 1 0.00
46 3 0.01
48 3 0.01
49 1 0.00
50 24 0.12
51 66 0.33
52 23 0.11
53 45 0.22
ACGTcount: A:0.33, C:0.01, G:0.20, T:0.46
Consensus pattern (51 bp):
ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTATT
Found at i:13862186 original size:35 final size:35
Alignment explanation
Indices: 13862074--13862186 Score: 104
Period size: 35 Copynumber: 3.1 Consensus size: 35
13862064 ATAAAATAAC
13862074 ATTTTATTTTAATAGTCAATTTTAATATTCCACAT
1 ATTTTATTTTAATAGTCAATTTTAATATTCCACAT
* * **** *
13862109 ATTTT-TTTATAATTATTAATATTATTTAATAAAATA-AC
1 ATTTTATTT-TAA-TAGTCA-A-T-TTTAATATTCCACAT
13862147 ATTTTATTTTAATAGTCAATTTTAATATTCCACAT
1 ATTTTATTTTAATAGTCAATTTTAATATTCCACAT
13862182 ATTTT
1 ATTTT
13862187 TTATATTTTA
Statistics
Matches: 57, Mismatches: 14, Indels: 14
0.67 0.16 0.16
Matches are distributed among these distances:
34 11 0.19
35 15 0.26
36 5 0.09
37 5 0.09
38 10 0.18
39 11 0.19
ACGTcount: A:0.37, C:0.08, G:0.02, T:0.53
Consensus pattern (35 bp):
ATTTTATTTTAATAGTCAATTTTAATATTCCACAT
Found at i:13862198 original size:73 final size:73
Alignment explanation
Indices: 13862043--13862188 Score: 283
Period size: 73 Copynumber: 2.0 Consensus size: 73
13862033 ACATTACTAA
13862043 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
13862108 TATTTTTT
66 TATTTTTT
*
13862116 TATAATTATTAATATTATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
13862181 TATTTTTT
66 TATTTTTT
13862189 ATATTTTATT
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 72 1.00
ACGTcount: A:0.40, C:0.07, G:0.01, T:0.51
Consensus pattern (73 bp):
TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
TATTTTTT
Found at i:13862356 original size:13 final size:13
Alignment explanation
Indices: 13862338--13862408 Score: 106
Period size: 13 Copynumber: 5.5 Consensus size: 13
13862328 ATTTATAATT
13862338 ATTTAAGTAATAA
1 ATTTAAGTAATAA
* *
13862351 ATTTAAGTAACAT
1 ATTTAAGTAATAA
13862364 ATTTAAGTAATAA
1 ATTTAAGTAATAA
* *
13862377 ATTTAAGTAACAT
1 ATTTAAGTAATAA
13862390 ATTTAAGTAATAA
1 ATTTAAGTAATAA
13862403 ATTTAA
1 ATTTAA
13862409 ACAAATTTTA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 50 1.00
ACGTcount: A:0.51, C:0.03, G:0.07, T:0.39
Consensus pattern (13 bp):
ATTTAAGTAATAA
Found at i:13862367 original size:26 final size:26
Alignment explanation
Indices: 13862337--13862408 Score: 144
Period size: 26 Copynumber: 2.8 Consensus size: 26
13862327 TATTTATAAT
13862337 TATTTAAGTAATAAATTTAAGTAACA
1 TATTTAAGTAATAAATTTAAGTAACA
13862363 TATTTAAGTAATAAATTTAAGTAACA
1 TATTTAAGTAATAAATTTAAGTAACA
13862389 TATTTAAGTAATAAATTTAA
1 TATTTAAGTAATAAATTTAA
13862409 ACAAATTTTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.40
Consensus pattern (26 bp):
TATTTAAGTAATAAATTTAAGTAACA
Found at i:13862435 original size:17 final size:17
Alignment explanation
Indices: 13862413--13862711 Score: 161
Period size: 17 Copynumber: 16.6 Consensus size: 17
13862403 ATTTAAACAA
13862413 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
13862430 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
*
13862447 ATTTTAGTAA-TAAATTT
1 ATTTTAGTAAGT-AATGT
13862464 AAACAAATTTTAGTAAGTAATGT
1 ------ATTTTAGTAAGTAATGT
* * *
13862487 ATTTAAGTAATTAAT-A
1 ATTTTAGTAAGTAATGT
* *
13862503 AATTTA--AA-CAA---
1 ATTTTAGTAAGTAATGT
13862514 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
13862531 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
*
13862548 ATTTTAGTAA-TAAATTT
1 ATTTTAGTAAGT-AATGT
13862565 AAACAAATTTTAGTAAGTAATGT
1 ------ATTTTAGTAAGTAATGT
* *
13862588 ATTTTAG-AAATAAATTT
1 ATTTTAGTAAGT-AATGT
*
13862605 AAACAAATTTATGTAAGTAATGT
1 -----ATTTTA-GTAAGTAATGT
13862628 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
*
13862645 ATTTTAGTAA-TAAATTT
1 ATTTTAGTAAGT-AATGT
*
13862662 AAACAAATTTTAGTAAGTAATTT
1 ------ATTTTAGTAAGTAATGT
13862685 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
13862702 ATTTTAGTAA
1 ATTTTAGTAA
13862712 TAAATTTAAC
Statistics
Matches: 224, Mismatches: 20, Indels: 76
0.70 0.06 0.24
Matches are distributed among these distances:
11 5 0.02
13 4 0.02
14 4 0.02
16 10 0.04
17 137 0.61
18 5 0.02
22 5 0.02
23 48 0.21
24 6 0.03
ACGTcount: A:0.43, C:0.02, G:0.12, T:0.44
Consensus pattern (17 bp):
ATTTTAGTAAGTAATGT
Found at i:13862459 original size:57 final size:57
Alignment explanation
Indices: 13862380--13862720 Score: 375
Period size: 57 Copynumber: 6.5 Consensus size: 57
13862370 GTAATAAATT
** *
13862380 TAAGTAACATATTTAAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
13862437 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTA--TT--
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
* * *
13862490 TAAGTAAT-TA----A-T-A-AATTTAAACA-AATTTT-AGTAAGTAATGTATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAA-ACAAATTTTAGTAAGTAATGTATTTTAG
13862538 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
* *
13862595 -AAATAA---A-TTTA--AACAAATTT-----A----T-GTAAGTAATGTATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
*
13862635 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATTTATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
13862692 TAAGTAATGTATTTTAGTAATAAATTTAA
1 TAAGTAATGTATTTTAGTAATAAATTTAA
13862721 CATTCAATCG
Statistics
Matches: 238, Mismatches: 14, Indels: 64
0.75 0.04 0.20
Matches are distributed among these distances:
40 18 0.08
41 6 0.03
44 14 0.06
45 16 0.07
46 4 0.02
47 9 0.04
48 9 0.04
49 2 0.01
50 8 0.03
52 7 0.03
53 10 0.04
54 1 0.00
55 4 0.02
56 17 0.07
57 113 0.47
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.43
Consensus pattern (57 bp):
TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
Found at i:13862474 original size:40 final size:40
Alignment explanation
Indices: 13862430--13862540 Score: 177
Period size: 44 Copynumber: 2.7 Consensus size: 40
13862420 TAAGTAATGT
13862430 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
*
13862470 ATTTTAGTAAGTAATGTATTTAAGTAATTAATAAATTTAAACAA
1 ATTTTAGTAAGTAATGTATTT---T-AGTAATAAATTTAAACAA
13862514 ATTTTAGTAAGTAATGTATTTTAGTAA
1 ATTTTAGTAAGTAATGTATTTTAGTAA
13862541 GTAATGTATT
Statistics
Matches: 65, Mismatches: 2, Indels: 8
0.87 0.03 0.11
Matches are distributed among these distances:
40 25 0.38
41 1 0.02
43 1 0.02
44 38 0.58
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.43
Consensus pattern (40 bp):
ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
Found at i:13862516 original size:101 final size:100
Alignment explanation
Indices: 13862397--13862699 Score: 533
Period size: 101 Copynumber: 3.0 Consensus size: 100
13862387 CATATTTAAG
13862397 TAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAAT
1 TAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAAT
*
13862462 TTAAACAAATTTTAGTAAGTAATGTATTTAAGTAA
66 TTAAACAAATTTTAGTAAGTAATGTATTTTAGTAA
13862497 TTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAA
1 -TAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAA
13862562 TTTAAACAAATTTTAGTAAGTAATGTATTTTAG--A
65 TTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAA
13862596 -AATAAATTTAAACAAA-TTTATGTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAA
1 TAATAAATTTAAACAAATTTTA-GTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAA
*
13862659 TTTAAACAAATTTTAGTAAGTAATTTATTTTAGTAA
65 TTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAA
13862695 GTAAT
1 -TAAT
13862700 GTATTTTAGT
Statistics
Matches: 195, Mismatches: 2, Indels: 10
0.94 0.01 0.05
Matches are distributed among these distances:
96 4 0.02
97 90 0.46
99 2 0.01
101 99 0.51
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.43
Consensus pattern (100 bp):
TAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAAT
TTAAACAAATTTTAGTAAGTAATGTATTTTAGTAA
Found at i:13862578 original size:40 final size:40
Alignment explanation
Indices: 13862531--13862637 Score: 189
Period size: 40 Copynumber: 2.7 Consensus size: 40
13862521 TAAGTAATGT
13862531 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
*
13862571 ATTTTAGTAAGTAATGTATTTTAGAAATAAATTTAAACAA
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
13862611 A-TTTATGTAAGTAATGTATTTTAGTAA
1 ATTTTA-GTAAGTAATGTATTTTAGTAA
13862638 GTAATGTATT
Statistics
Matches: 64, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
39 4 0.06
40 60 0.94
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.43
Consensus pattern (40 bp):
ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
Found at i:13862691 original size:97 final size:97
Alignment explanation
Indices: 13862380--13862688 Score: 521
Period size: 97 Copynumber: 3.1 Consensus size: 97
13862370 GTAATAAATT
** *
13862380 TAAGTAACATATTTAAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAAT
1 TAAGTAATGTATTTAAGAAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAAT
13862445 GTATTTTAGTAATAAATTTAAACAAATTTTAG
66 GTATTTTAGTAATAAATTTAAACAAATTTTAG
13862477 TAAGTAATGTATTTAAGTAATTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAG
1 TAAGTAATGTATTTAAG--A--AATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAG
13862542 TAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
62 TAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
*
13862578 TAAGTAATGTATTTTAGAAATAAATTTAAACAAA-TTTATGTAAGTAATGTATTTTAGTAAGTAA
1 TAAGTAATGTATTTAAGAAATAAATTTAAACAAATTTTA-GTAAGTAATGTATTTTAGTAAGTAA
13862642 TGTATTTTAGTAATAAATTTAAACAAATTTTAG
65 TGTATTTTAGTAATAAATTTAAACAAATTTTAG
*
13862675 TAAGTAATTTATTT
1 TAAGTAATGTATTT
13862689 TAGTAAGTAA
Statistics
Matches: 202, Mismatches: 5, Indels: 10
0.93 0.02 0.05
Matches are distributed among these distances:
96 4 0.02
97 102 0.50
99 1 0.00
101 95 0.47
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.43
Consensus pattern (97 bp):
TAAGTAATGTATTTAAGAAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAAT
GTATTTTAGTAATAAATTTAAACAAATTTTAG
Found at i:13864070 original size:11 final size:11
Alignment explanation
Indices: 13864054--13864093 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
13864044 GATGATAATA
13864054 CATTAGTTACC
1 CATTAGTTACC
13864065 CATTAGTTACC
1 CATTAGTTACC
*
13864076 CACTAGTTACC
1 CATTAGTTACC
13864087 CA-TAGTT
1 CATTAGTT
13864094 TGAGATATTC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
10 5 0.18
11 23 0.82
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.35
Consensus pattern (11 bp):
CATTAGTTACC
Found at i:13865537 original size:14 final size:14
Alignment explanation
Indices: 13865518--13865547 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
13865508 CACGAACAGC
13865518 AAGATGATTAACTA
1 AAGATGATTAACTA
13865532 AAGATGATTAACTA
1 AAGATGATTAACTA
13865546 AA
1 AA
13865548 AACCTTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.53, C:0.07, G:0.13, T:0.27
Consensus pattern (14 bp):
AAGATGATTAACTA
Found at i:13865799 original size:71 final size:71
Alignment explanation
Indices: 13865683--13865883 Score: 350
Period size: 71 Copynumber: 2.8 Consensus size: 71
13865673 CCAGATCCAG
* * *
13865683 ATTTCAGAA-CCAAAGCATAATTCAGAACATAACAACATAATCAAAAACAAATTGTTTCAGGCTC
1 ATTTCA-AATCCAAAGCATATTTCAGAACATAACAACATAATCAAAAACAAATTATTTCAGACTC
13865747 AAAAATT
65 AAAAATT
13865754 ATTTCAAATCCAAAGCATATTTCAGAACATAACAACATAATCAAAAACAAATTATTTCAGACTCA
1 ATTTCAAATCCAAAGCATATTTCAGAACATAACAACATAATCAAAAACAAATTATTTCAGACTCA
*
13865819 GAAATT
66 AAAATT
13865825 ATTTCAAATCCAAAGCATATTTCAGAACATAACAACATAATCAAAAACAAATTATTTCA
1 ATTTCAAATCCAAAGCATATTTCAGAACATAACAACATAATCAAAAACAAATTATTTCA
13865884 AATCCACTCA
Statistics
Matches: 125, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
70 2 0.02
71 123 0.98
ACGTcount: A:0.50, C:0.18, G:0.06, T:0.26
Consensus pattern (71 bp):
ATTTCAAATCCAAAGCATATTTCAGAACATAACAACATAATCAAAAACAAATTATTTCAGACTCA
AAAATT
Found at i:13866217 original size:22 final size:22
Alignment explanation
Indices: 13866189--13866235 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
13866179 GTGGCTGTAA
*
13866189 TAACAGAAACGCCTTACCTATT
1 TAACAGAAACGCCTTACATATT
13866211 TAACAGAAACGCCTTACATATT
1 TAACAGAAACGCCTTACATATT
13866233 TAA
1 TAA
13866236 TCGGAATAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.28
Consensus pattern (22 bp):
TAACAGAAACGCCTTACATATT
Found at i:13867391 original size:22 final size:21
Alignment explanation
Indices: 13867342--13867396 Score: 56
Period size: 22 Copynumber: 2.6 Consensus size: 21
13867332 TAAAGTAGCC
* *
13867342 TAAACCCCAAACTTTAAACTT
1 TAAACCCCAAACTCTAAACCT
* *
13867363 TATACCCCAGACTCCTAAACCT
1 TAAACCCCAAACT-CTAAACCT
*
13867385 TAAACCCTAAAC
1 TAAACCCCAAAC
13867397 ACCCTAATAC
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
21 11 0.42
22 15 0.58
ACGTcount: A:0.40, C:0.35, G:0.02, T:0.24
Consensus pattern (21 bp):
TAAACCCCAAACTCTAAACCT
Found at i:13867395 original size:14 final size:14
Alignment explanation
Indices: 13867376--13867446 Score: 56
Period size: 14 Copynumber: 5.0 Consensus size: 14
13867366 ACCCCAGACT
13867376 CCTAAACCTTAAAC
1 CCTAAACCTTAAAC
*
13867390 CCTAAACACCCTAATAC
1 CCT-AA-ACCTTAA-AC
13867407 CCT-AACCTTAAA-
1 CCTAAACCTTAAAC
* * *
13867419 CCTACATCGTAAAC
1 CCTAAACCTTAAAC
*
13867433 CCTAAACTTTAAAC
1 CCTAAACCTTAAAC
13867447 TTTACACTGT
Statistics
Matches: 43, Mismatches: 9, Indels: 10
0.69 0.15 0.16
Matches are distributed among these distances:
12 3 0.07
13 7 0.16
14 19 0.44
15 3 0.07
16 6 0.14
17 5 0.12
ACGTcount: A:0.41, C:0.35, G:0.01, T:0.23
Consensus pattern (14 bp):
CCTAAACCTTAAAC
Found at i:13867881 original size:113 final size:115
Alignment explanation
Indices: 13867683--13867888 Score: 290
Period size: 113 Copynumber: 1.8 Consensus size: 115
13867673 ATCAACAAAT
* * * *
13867683 CGCCGCTAATACTATGCTTTAGCGGCGTTTTACCGAAATCGCCACTAAATCAAGTATACATCAAG
1 CGCCGCTAATACTATGCTTTAACGGCGTTTCACCGAAAGCGCCACTAAATCAACTATACATCAAG
*
13867748 ACCAAAACGATGCGTTTTGGTTCAGATACTTGGTGGCGCTTTTATCCAAG
66 ACCAAAACGATGCGTTTTGGTTAAGATACTTGGTGGCGCTTTTATCCAAG
* * * *
13867798 CGCCGCTAATACTATGCTTTAACGGCGTTTCA-C-TAAGCGCCACTAATTCTACTATACATCGAG
1 CGCCGCTAATACTATGCTTTAACGGCGTTTCACCGAAAGCGCCACTAAATCAACTATACATCAAG
* **
13867861 GCCAAAATTATGCGTTTTGGTTAAGATA
66 ACCAAAACGATGCGTTTTGGTTAAGATA
13867889 TTTTGCTGCT
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
113 48 0.61
114 1 0.01
115 30 0.38
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (115 bp):
CGCCGCTAATACTATGCTTTAACGGCGTTTCACCGAAAGCGCCACTAAATCAACTATACATCAAG
ACCAAAACGATGCGTTTTGGTTAAGATACTTGGTGGCGCTTTTATCCAAG
Found at i:13868058 original size:208 final size:210
Alignment explanation
Indices: 13867798--13868331 Score: 721
Period size: 227 Copynumber: 2.5 Consensus size: 210
13867788 TTTATCCAAG
13867798 CGCCGCTAATACTATGCTTTAACGGCGTTTCACTAAGCGCCACTAATTCTACTATACATCGAGGC
1 CGCCGCTAATACTATGCTTTAACGGCGTTTCACTAAGCGCCACTAATTCTACTATACATCGAGGC
13867863 CAAAATTATGCGTTTTGGTTAAGATATTTTGC-T-GCTATTAATATTCTTTAGCGGCGGTTTACC
66 CAAAATTATGCGTTTTGGTTAAGATATTTTGCATCGCTATTAATATTCTTTAGCGGCGGTTTACC
13867926 GTAAGCACCACTAATTTTATATACATTAAGATCAAAACACTGCGTTTTTGTTAAGATATTTTGCG
131 GTAAGCACCACTAATTTTATATACATTAAGATCAAAACACTGCGTTTTTGTTAAGATATTTTGCG
13867991 GCGCTAGCTACAAAT
196 GCGCTAGCTACAAAT
13868006 CGCCGCTAATACTATGCTTTAACGGCGTTTCACTAAGCGCCACTAATTCTACTATACATCGAGGC
1 CGCCGCTAATACTATGCTTTAACGGCGTTTCACTAAGCGCCACTAATTCTACTATACATCGAGGC
13868071 CAAAATTATGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCACAAAGTGCCGCTATTAATATTC
66 CAAAATTATGCGTTTTGGTTAAGATATTTT-----G-------C--A-T--CGCTATTAATATTC
* *
13868136 TTTAGCGGCGGTTTACCGTAAGCGCCACTAATTTTATATACATTAAGATCAAAACGCTGCGTTTT
114 TTTAGCGGCGGTTTACCGTAAGCACCACTAATTTTATATACATTAAGATCAAAACACTGCGTTTT
*
13868201 TGTTAAGATATTTTGTGGCGCTAGCTACAAAT
179 TGTTAAGATATTTTGCGGCGCTAGCTACAAAT
* * * * * * * *
13868233 CGCCGCTAATACTATTCTTTAGCGGCGTTTGACCATATGCGCCACTAGTTCTAGTATAAATCAAG
1 CGCCGCTAATACTATGCTTTAACGGCGTTTCA-C-TAAGCGCCACTAATTCTACTATACATCGAG
* ** * * * *
13868298 ACCAAAACGATGTGTTTCGCTTAAGATAGTTTGC
64 GCCAAAATTATGCGTTTTGGTTAAGATATTTTGC
13868332 GGCGCTTCCA
Statistics
Matches: 287, Mismatches: 18, Indels: 33
0.85 0.05 0.10
Matches are distributed among these distances:
208 95 0.33
213 1 0.00
217 1 0.00
220 1 0.00
224 2 0.01
227 136 0.47
228 1 0.00
229 50 0.17
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.34
Consensus pattern (210 bp):
CGCCGCTAATACTATGCTTTAACGGCGTTTCACTAAGCGCCACTAATTCTACTATACATCGAGGC
CAAAATTATGCGTTTTGGTTAAGATATTTTGCATCGCTATTAATATTCTTTAGCGGCGGTTTACC
GTAAGCACCACTAATTTTATATACATTAAGATCAAAACACTGCGTTTTTGTTAAGATATTTTGCG
GCGCTAGCTACAAAT
Found at i:13868221 original size:114 final size:112
Alignment explanation
Indices: 13867896--13868562 Score: 564
Period size: 113 Copynumber: 5.9 Consensus size: 112
13867886 ATATTTTGCT
* * * *
13867896 GCTATTAATATTCTTTAGCGGCGGTTTACCGTAAGCACCACTAATTTTATATACATTAAGATCAA
1 GCTATTACTATTCTTTAACGGC-GTTTACCGTAAGCGCCACTAATTTTATATACATCAAGA-CAA
* *
13867961 AACACTGCGTTTTTGTTAAGATATTTTGCGGCGCTAGCT-ACAAA-TCGCC
64 AACACTGCGTTTTGGTTAAGATATTTTGCGGCGCT-TCTCACAAAGT-GCC
* * * * *
13868010 GCTAATACTATGCTTTAACGGCGTTT-CAC-TAAGCGCCACTAATTCTACTATACATCGAGGCCA
1 GCTATTACTATTCTTTAACGGCGTTTAC-CGTAAGCGCCACTAATTTTA-TATACATC-AAGACA
*
13868073 AAATTA-TGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCACAAAGTGCC
63 AAA-CACTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCACAAAGTGCC
* * *
13868123 GCTATTAATATTCTTTAGCGGCGGTTTACCGTAAGCGCCACTAATTTTATATACATTAAGATCAA
1 GCTATTACTATTCTTTAACGGC-GTTTACCGTAAGCGCCACTAATTTTATATACATCAAGA-CAA
* * * *
13868188 AACGCTGCGTTTTTGTTAAGATATTTTGTGGCGCTAGCT-ACAAA-TCGCC
64 AACACTGCGTTTTGGTTAAGATATTTTGCGGCGCT-TCTCACAAAGT-GCC
* * * * * * *
13868237 GCTAATACTATTCTTTAGCGGCGTTTGACCATATGCGCCACTAGTTCTAGTATAAATCAAGACCA
1 GCTATTACTATTCTTTAACGGCGTTT-ACCGTAAGCGCCACTAATTTTA-TATACATCAAGA-CA
* * * * * * *
13868302 AAACGA-TGTGTTTCGCTTAAGATAGTTTGCGGCGCTTC-CATAAAGCGTC
63 AAAC-ACTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCACAAAGTGCC
* * * * * * * * *
13868351 GCTATTACTGTACTTTAACGGCGTTTTCCTATAAACGCCACTAATTCTAAGATACCTCAAGACCA
1 GCTATTACTATTCTTTAACGGCGTTTACC-GTAAGCGCCACTAATT-TTATATACATCAAGACAA
* * * * *
13868416 AACTCTGCGTTTTGGTTAAGCTATTTTGCGGCGTTTC-CAGAAAGCGCC
64 AACACTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCACAAAGTGCC
* * * * * *
13868464 GCTATTACTGTCCTTTAATGGCGTTT-CGCGTAAACGCCACTACTTTTAAGATACATCAAGACGA
1 GCTATTACTATTCTTTAACGGCGTTTAC-CGTAAGCGCCACTAATTTT-ATATACATCAAGAC-A
* * *
13868528 AAACACAGCGTTTTGGTTAAGAGATTTCGCGGCGC
63 AAACACTGCGTTTTGGTTAAGATATTTTGCGGCGC
13868563 ATTGTGGTAA
Statistics
Matches: 448, Mismatches: 81, Indels: 49
0.78 0.14 0.08
Matches are distributed among these distances:
111 1 0.00
112 47 0.10
113 175 0.39
114 164 0.37
115 61 0.14
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (112 bp):
GCTATTACTATTCTTTAACGGCGTTTACCGTAAGCGCCACTAATTTTATATACATCAAGACAAAA
CACTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCACAAAGTGCC
Found at i:13868467 original size:227 final size:227
Alignment explanation
Indices: 13867896--13868448 Score: 662
Period size: 227 Copynumber: 2.4 Consensus size: 227
13867886 ATATTTTGCT
* * * * * * * *
13867896 GCTATTAATATTCTTTAGCGGCGGTTTACCGTAAGCACCACTAATTTTATATACATTAAGATCAA
1 GCTATTAATATACTTTAACGGCGGTTTACCATAAACGCCACTAATTTAAGATACATCAAGATCAA
13867961 AACACTGCGTTTTTGTTAAGATATTTTGCGGCGCTAGCTACAAATCGCCGCTAATACTATGCTTT
66 AACACTGCGTTTTTGTTAAGATATTTTGCGGCGCTAGCTACAAATCGCCGCTAATACTATGCTTT
* * * ** * *
13868026 AACGGCGTTTCACTAAGCGCCACTAATTCTACTATACATCGAGGCCAAAATTATGCGTTTTGGTT
131 AACGGCGTTTCACTAAGCGCCACTAATTCTACTATAAATCAAGACCAAAACGATGCGTTTCGCTT
* *
13868091 AAGATATTTTGCGGCGCTTCTCACAAAGTGCC
196 AAGATAGTTTGCGGCGCTTCTCACAAAGCGCC
* * * * * * *
13868123 GCTATTAATATTCTTTAGCGGCGGTTTACCGTAAGCGCCACTAATTTTATATACATTAAGATCAA
1 GCTATTAATATACTTTAACGGCGGTTTACCATAAACGCCACTAATTTAAGATACATCAAGATCAA
* * *
13868188 AACGCTGCGTTTTTGTTAAGATATTTTGTGGCGCTAGCTACAAATCGCCGCTAATACTATTCTTT
66 AACACTGCGTTTTTGTTAAGATATTTTGCGGCGCTAGCTACAAATCGCCGCTAATACTATGCTTT
* * * * * *
13868253 AGCGGCGTTTGACCATATGCGCCACTAGTTCTAGTATAAATCAAGACCAAAACGATGTGTTTCGC
131 AACGGCGTTTCA-C-TAAGCGCCACTAATTCTACTATAAATCAAGACCAAAACGATGCGTTTCGC
* *
13868318 TTAAGATAGTTTGCGGCGCTTC-CATAAAGCGTC
194 TTAAGATAGTTTGCGGCGCTTCTCACAAAGCGCC
* * * *
13868351 GCTATTACTGTACTTTAACGGC-GTTTTCCTATAAACGCCACTAATTCTAAGATACCTCAAGA-C
1 GCTATTAATATACTTTAACGGCGGTTTACC-ATAAACGCCACTAATT-TAAGATACATCAAGATC
* * * *
13868414 CAAACTCTGCGTTTTGGTTAAGCTATTTTGCGGCG
64 AAAACACTGCGTTTTTGTTAAGATATTTTGCGGCG
13868449 TTTCCAGAAA
Statistics
Matches: 285, Mismatches: 37, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
227 142 0.50
228 72 0.25
229 71 0.25
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (227 bp):
GCTATTAATATACTTTAACGGCGGTTTACCATAAACGCCACTAATTTAAGATACATCAAGATCAA
AACACTGCGTTTTTGTTAAGATATTTTGCGGCGCTAGCTACAAATCGCCGCTAATACTATGCTTT
AACGGCGTTTCACTAAGCGCCACTAATTCTACTATAAATCAAGACCAAAACGATGCGTTTCGCTT
AAGATAGTTTGCGGCGCTTCTCACAAAGCGCC
Found at i:13872774 original size:28 final size:30
Alignment explanation
Indices: 13872743--13872806 Score: 78
Period size: 28 Copynumber: 2.2 Consensus size: 30
13872733 ATAAAAAATG
*
13872743 AAAAATGTTAAATATAAAATATT-GTT-AA
1 AAAAATATTAAATATAAAATATTAGTTGAA
* * *
13872771 AAAATTATTAAATCTAAATTATTAGTTGAA
1 AAAAATATTAAATATAAAATATTAGTTGAA
13872801 AAAAAT
1 AAAAAT
13872807 TATAACCCTA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
28 19 0.66
29 3 0.10
30 7 0.24
ACGTcount: A:0.56, C:0.02, G:0.06, T:0.36
Consensus pattern (30 bp):
AAAAATATTAAATATAAAATATTAGTTGAA
Found at i:13882540 original size:21 final size:21
Alignment explanation
Indices: 13882514--13882554 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
13882504 ATCTGCTCAA
*
13882514 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGTTGTGGAGTAC
13882535 ACTCCACCTGTTGTGGAGTA
1 ACTCCACCTGTTGTGGAGTA
13882555 TTGCTCGTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.32
Consensus pattern (21 bp):
ACTCCACCTGTTGTGGAGTAC
Found at i:13885964 original size:13 final size:13
Alignment explanation
Indices: 13885946--13885993 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
13885936 TATATTTGTA
13885946 AAATTTTAAAAAT
1 AAATTTTAAAAAT
13885959 AAATTTTAAAAA-
1 AAATTTTAAAAAT
*
13885971 AAA-TCTAAAAAT
1 AAATTTTAAAAAT
* *
13885983 ATATATTAAAA
1 AAATTTTAAAA
13885994 TTGAATAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
11 7 0.24
12 5 0.17
13 17 0.59
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (13 bp):
AAATTTTAAAAAT
Found at i:13891001 original size:12 final size:12
Alignment explanation
Indices: 13890982--13891015 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
13890972 TGTTATATTG
13890982 CATTATTATTAT
1 CATTATTATTAT
**
13890994 TGTTATTATTAT
1 CATTATTATTAT
13891006 CATTATTATT
1 CATTATTATT
13891016 TCTATACATA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.62
Consensus pattern (12 bp):
CATTATTATTAT
Found at i:13891085 original size:21 final size:22
Alignment explanation
Indices: 13891033--13891088 Score: 69
Period size: 24 Copynumber: 2.5 Consensus size: 22
13891023 ATATACACAC
13891033 GTATATATTTTTTATAACATAT
1 GTATATATTTTTTATAACATAT
* *
13891055 ATATGCATATTTTTTA-AATATAT
1 GTAT--ATATTTTTTATAACATAT
13891078 GTATATATTTT
1 GTATATATTTT
13891089 CAGACTTTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 7 0.24
22 3 0.10
23 9 0.31
24 10 0.34
ACGTcount: A:0.36, C:0.04, G:0.05, T:0.55
Consensus pattern (22 bp):
GTATATATTTTTTATAACATAT
Found at i:13891125 original size:18 final size:18
Alignment explanation
Indices: 13891102--13891140 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
13891092 ACTTTTATAA
*
13891102 ATACATGTATATATTTTT
1 ATACATATATATATTTTT
13891120 ATACATATATATATTTTT
1 ATACATATATATATTTTT
13891138 ATA
1 ATA
13891141 TTTTATTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.54
Consensus pattern (18 bp):
ATACATATATATATTTTT
Found at i:13901559 original size:492 final size:492
Alignment explanation
Indices: 13900635--13901622 Score: 1868
Period size: 492 Copynumber: 2.0 Consensus size: 492
13900625 GCTTAATCTA
13900635 ACAAAGTGCACCTTTGGAGCCAGATCAGGGAAGTTGCTAGGCTTTATAGTCAGTGGAAAAGGAAT
1 ACAAAGTGCACCTTTGGAGCCAGATCAGGGAAGTTGCTAGGCTTTATAGTCAGTGGAAAAGGAAT
13900700 TGAGGTTGACCCAGATAAAGTCAAGGTGATACGAGACTTGCCTCCACCACACACTCAGAAAGAGG
66 TGAGGTTGACCCAGATAAAGTCAAGGTGATACGAGACTTGCCTCCACCACACACTCAGAAAGAGG
*
13900765 TACGAGGTTTTCTAGGAAGATTGAATTACATTGCTCGGTTCATTTTACAGTTAACTAAGAAATGT
131 TACGAGGTTTTCTAGGAAGATTGAATTACATTGCTCGGTTCATTTCACAGTTAACTAAGAAATGT
13900830 GATCCCATATTCCGTCTTCTGAGGAAGCATAATCCGGGTGTATCGGATGAATAATATCAAAAAGC
196 GATCCCATATTCCGTCTTCTGAGGAAGCATAATCCGGGTGTATCGGATGAATAATATCAAAAAGC
13900895 TTTTGAAAAAATAAAATAGTTCTTGTCCATCACTCCAGTGCTATCACCACCTAGTCCGGATAGGC
261 TTTTGAAAAAATAAAATAGTTCTTGTCCATCACTCCAGTGCTATCACCACCTAGTCCGGATAGGC
*
13900960 CATTAATACTGTATTTAATAGTATTTGAAAATTCCATGGGGTGCGTGTTAGGCTAACATGATGAG
326 CACTAATACTGTATTTAATAGTATTTGAAAATTCCATGGGGTGCGTGTTAGGCTAACATGATGAG
13901025 ACAGGAAGAAAAGAAAGGGCAATATATTATCTTAGCAAGAAATTCACTGATTGTGAAACGAGGTA
391 ACAGGAAGAAAAGAAAGGGCAATATATTATCTTAGCAAGAAATTCACTGATTGTGAAACGAGGTA
*
13901090 CTCGTCTATCGAGAAGTTATGTTGTGCCCTGGTTTGG
456 CTCGTCTATCGAGAAGTTATGTTGTGCCCTGGTTTAG
13901127 ACAAAGTGCACCTTTGGAGCCAGATCAGGGAAGTTGCTAGGCTTTATAGTCAGTGGAAAAGGAAT
1 ACAAAGTGCACCTTTGGAGCCAGATCAGGGAAGTTGCTAGGCTTTATAGTCAGTGGAAAAGGAAT
*
13901192 TGAGGTTGACCCAGATAAAGTCAAGGTGATACGAGATTTGCCTCCACCACACACTCAGAAAGAGG
66 TGAGGTTGACCCAGATAAAGTCAAGGTGATACGAGACTTGCCTCCACCACACACTCAGAAAGAGG
* * *
13901257 TACGAGGTTTTCTAGGAAGATTGAATTACATTGCTCGTTTTATTTCACAGTTAACTGAGAAATGT
131 TACGAGGTTTTCTAGGAAGATTGAATTACATTGCTCGGTTCATTTCACAGTTAACTAAGAAATGT
* *
13901322 GATCCCATATTCCGTCTTCTGAGGAAGCATAATCCGGGTGTATGGGATGAATAATATCAAAATGC
196 GATCCCATATTCCGTCTTCTGAGGAAGCATAATCCGGGTGTATCGGATGAATAATATCAAAAAGC
13901387 TTTTGAAAAAATAAAATAGTTCTTGTCCATCACTCCAGTGCTATCACCACCTAGTCCGGATAGGC
261 TTTTGAAAAAATAAAATAGTTCTTGTCCATCACTCCAGTGCTATCACCACCTAGTCCGGATAGGC
*
13901452 CACTAATACTGTATTTAATAGTATTTGACAATTCCATGGGGTGCGTGTTAGGCTAACATGATGAG
326 CACTAATACTGTATTTAATAGTATTTGAAAATTCCATGGGGTGCGTGTTAGGCTAACATGATGAG
**
13901517 ACAGGAAGAAAAGAAAGGGCAATATATTATCTTAGCAAGAAATTCACTGATTGTGAAGTGAGGTA
391 ACAGGAAGAAAAGAAAGGGCAATATATTATCTTAGCAAGAAATTCACTGATTGTGAAACGAGGTA
13901582 CTCGTCTATCGAGAAGTTATGTTGTGCCCTGGTTTAG
456 CTCGTCTATCGAGAAGTTATGTTGTGCCCTGGTTTAG
13901619 ACAA
1 ACAA
13901623 CTCGGAGATT
Statistics
Matches: 484, Mismatches: 12, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
492 484 1.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (492 bp):
ACAAAGTGCACCTTTGGAGCCAGATCAGGGAAGTTGCTAGGCTTTATAGTCAGTGGAAAAGGAAT
TGAGGTTGACCCAGATAAAGTCAAGGTGATACGAGACTTGCCTCCACCACACACTCAGAAAGAGG
TACGAGGTTTTCTAGGAAGATTGAATTACATTGCTCGGTTCATTTCACAGTTAACTAAGAAATGT
GATCCCATATTCCGTCTTCTGAGGAAGCATAATCCGGGTGTATCGGATGAATAATATCAAAAAGC
TTTTGAAAAAATAAAATAGTTCTTGTCCATCACTCCAGTGCTATCACCACCTAGTCCGGATAGGC
CACTAATACTGTATTTAATAGTATTTGAAAATTCCATGGGGTGCGTGTTAGGCTAACATGATGAG
ACAGGAAGAAAAGAAAGGGCAATATATTATCTTAGCAAGAAATTCACTGATTGTGAAACGAGGTA
CTCGTCTATCGAGAAGTTATGTTGTGCCCTGGTTTAG
Found at i:13904919 original size:45 final size:45
Alignment explanation
Indices: 13904782--13905142 Score: 340
Period size: 45 Copynumber: 8.0 Consensus size: 45
13904772 AACAGATCGG
* * *
13904782 TGAAGATAGCAAATCCTATCTCCTTGAAGTTGCAGTAGAGTGGAT
1 TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGTAGAT
* * * * *
13904827 TGAAGATATGCAAGTCTTATCTCCATGAAGTTGCAGCGGAGCAGAT
1 TGAAGATA-GCAAATCCTATCTCCCTGAAGTTGCAGTGGAGTAGAT
*
13904873 TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGAT
1 TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGTAGAT
* * * * * * *
13904918 TGAAGATATGCAAGTCTTATCTCCCTGAAGTTACAGCGGAGCAAAC
1 TGAAGATA-GCAAATCCTATCTCCCTGAAGTTGCAGTGGAGTAGAT
* * *
13904964 TGAAGATAGCAAATCTTATCTCGCT-AATGTTGCAGTGGAGTGGAT
1 TGAAGATAGCAAATCCTATCTCCCTGAA-GTTGCAGTGGAGTAGAT
* *
13905009 TGAAGATAGCAAGTCTTATC-CTCCTGAAGTTG-AGTGG-GATAGAT
1 TGAAGATAGCAAATCCTATCTC-CCTGAAGTTGCAGTGGAG-TAGAT
* ** ** *
13905053 TGAAGATGGTGAA-CCTTATCTCCCTGGGGTTGCAGTGGAGCAGAT
1 TGAAGATAGCAAATCC-TATCTCCCTGAAGTTGCAGTGGAGTAGAT
** *
13905098 TGAAGCCA--ATAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGAT
1 TGAAGATAGCA-AATCCTATCTCCCTGAAGTTGCAGTGGAGTAGAT
13905142 T
1 T
13905143 AAAACATCCA
Statistics
Matches: 256, Mismatches: 48, Indels: 25
0.78 0.15 0.08
Matches are distributed among these distances:
43 2 0.01
44 61 0.24
45 115 0.45
46 78 0.30
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (45 bp):
TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGTAGAT
Found at i:13904937 original size:91 final size:90
Alignment explanation
Indices: 13904782--13905102 Score: 409
Period size: 91 Copynumber: 3.6 Consensus size: 90
13904772 AACAGATCGG
* *
13904782 TGAAGATAGCAAATCCTATCTCCTTGAAGTTGCAGTAGAGTGGATTGAAGATATGCAAGTCTTAT
1 TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTGAAGATATGCAAGTCTTAT
13904847 CTCCATGAAGTTGCAGCGGAGCAGAT
66 CTCC-TGAAGTTGCAGCGGAGCAGAT
13904873 TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTGAAGATATGCAAGTCTTAT
1 TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTGAAGATATGCAAGTCTTAT
* * *
13904938 CTCCCTGAAGTTACAGCGGAGCAAAC
66 CT-CCTGAAGTTGCAGCGGAGCAGAT
* *
13904964 TGAAGATAGCAAATCTTATCTCGCT-AATGTTGCAGTGGAGTGGATTGAAGATA-GCAAGTCTTA
1 TGAAGATAGCAAATCCTATCTCCCTGAA-GTTGCAGTGGAGTGGATTGAAGATATGCAAGTCTTA
* *
13905027 TCCTCCTGAAGTTG-AGTGG-GATAGAT
65 T-CTCCTGAAGTTGCAGCGGAG-CAGAT
* ** ** **
13905053 TGAAGATGGTGAA-CCTTATCTCCCTGGGGTTGCAGTGGAGCAGATTGAAG
1 TGAAGATAGCAAATCC-TATCTCCCTGAAGTTGCAGTGGAGTGGATTGAAG
13905103 CCAATAATCC
Statistics
Matches: 203, Mismatches: 21, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
88 2 0.01
89 44 0.22
90 22 0.11
91 133 0.66
92 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (90 bp):
TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTGAAGATATGCAAGTCTTAT
CTCCTGAAGTTGCAGCGGAGCAGAT
Found at i:13907029 original size:44 final size:44
Alignment explanation
Indices: 13906894--13907525 Score: 702
Period size: 44 Copynumber: 14.3 Consensus size: 44
13906884 GAAAAGCAGC
*
13906894 GGATCTTGTCTTCATGTATTGACATGAAGTAGATC-GAAGATAGC
1 GGATCTTGTCTTCATGTATTGACATGAAGTAGATCAG-AGATAGT
*** * *** *
13906938 GGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCAAAGAT-GAT
1 GGATCTTGTCTTCATGTA-TTGACATGAAGTAGATCAGAGATAG-T
* *
13906983 GGATCTTGTCTTCATGCATTGACATGAAGTAGATCAGAGATAAT
1 GGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGT
*
13907027 GGATCTTGTCTTCATGTATTGACATGAAGTAGATC-GAAGATAGC
1 GGATCTTGTCTTCATGTATTGACATGAAGTAGATCAG-AGATAGT
* **** * *** * *
13907071 GGATCTTATCTTCCCACACTGGTGGTGAAGTAAATC-GAAGATAAT
1 GGATCTTGTCTTCATGTA-TTGACATGAAGTAGATCAG-AGATAGT
*
13907116 GGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAAT
1 GGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGT
* *
13907160 GGATCTTATCTTCATGTATTGACATGAAGTAGATC-GAAGATAGC
1 GGATCTTGTCTTCATGTATTGACATGAAGTAGATCAG-AGATAGT
*
13907204 GGATCTTGTCTTCATGCATTGACATGAAGTAGATCAGAGATAGT
1 GGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGT
*
13907248 GGATCTTGTCTTCATGTATTGACATGAAGTAGATC-GAAGATAGC
1 GGATCTTGTCTTCATGTATTGACATGAAGTAGATCAG-AGATAGT
* *
13907292 GGATCTTGTCTTCATGTATTGACATGAAGTAGATCAAAGATAAT
1 GGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGT
*
13907336 GGATCTTGTCTTCATGTATTAACATGAAGTAGATCAGAGATAGT
1 GGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGT
* * *
13907380 GGATCTTGTCTTAATGTATTGACATGAAGTAGATC-GAAGATGGC
1 GGATCTTGTCTTCATGTATTGACATGAAGTAGATCAG-AGATAGT
* *** * *** * *
13907424 AGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCAAAGATAAT
1 GGATCTTGTCTTCATGTA-TTGACATGAAGTAGATCAGAGATAGT
*
13907469 GGATCTTGTCTTCATGTATTGACATGAAGTAAATCAGAGATAGT
1 GGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGT
* *
13907513 AGATCGTGTCTTC
1 GGATCTTGTCTTC
13907526 CCATACTAGT
Statistics
Matches: 486, Mismatches: 88, Indels: 28
0.81 0.15 0.05
Matches are distributed among these distances:
43 4 0.01
44 386 0.79
45 96 0.20
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (44 bp):
GGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGT
Found at i:13907137 original size:133 final size:132
Alignment explanation
Indices: 13906894--13907414 Score: 713
Period size: 133 Copynumber: 3.9 Consensus size: 132
13906884 GAAAAGCAGC
* *
13906894 GGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCGGATCTTGTCTTCCCATACTG
1 GGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCGGATCTTGTCTTCACACA-TG
*** * * *
13906959 GTGGTGAAGTAGATCAAAGATGATGGATCTTGTCTTCATGCATTGACATGAAGTAGATCAGAGAT
65 GACATGAAGTAGATCAGAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGAT
13907024 AAT
130 AAT
* *
13907027 GGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCGGATCTTATCTTCCCACACTG
1 GGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCGGATCTTGTCTTCACACA-TG
*** *
13907092 GTGGTGAAGTAAATC-GAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGA
65 GACATGAAGTAGATCAG-AGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGA
13907156 TAAT
129 TAAT
* ** *
13907160 GGATCTTATCTTCATGTATTGACATGAAGTAGATCGAAGATAGCGGATCTTGTCTTCATGCATTG
1 GGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCGGATCTTGTCTTCACACATGG
*
13907225 ACATGAAGTAGATCAGAGATAGTGGATCTTGTCTTCATGTATTGACATGAAGTAGATC-GAAGAT
66 ACATGAAGTAGATCAGAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAG-AGAT
**
13907289 AGC
130 AAT
* ** *** **
13907292 GGATCTTGTCTTCATGTATTGACATGAAGTAGATCAAAGATAATGGATCTTGTCTTCATGTATTA
1 GGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCGGATCTTGTCTTCACACATGG
* *
13907357 ACATGAAGTAGATCAGAGATAGTGGATCTTGTCTTAATGTATTGACATGAAGTAGATC
66 ACATGAAGTAGATCAGAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATC
13907415 GAAGATGGCA
Statistics
Matches: 359, Mismatches: 26, Indels: 7
0.92 0.07 0.02
Matches are distributed among these distances:
131 1 0.00
132 174 0.48
133 184 0.51
ACGTcount: A:0.31, C:0.13, G:0.24, T:0.32
Consensus pattern (132 bp):
GGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCGGATCTTGTCTTCACACATGG
ACATGAAGTAGATCAGAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATA
AT
Found at i:13907541 original size:44 final size:44
Alignment explanation
Indices: 13907424--13907554 Score: 115
Period size: 44 Copynumber: 3.0 Consensus size: 44
13907414 CGAAGATGGC
* *
13907424 AGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCAAAGATAAT
1 AGATCTTGTCTTCCCATACTAGT-GTGAAGTAAATCAAAGATAAT
* * * * *
13907469 GGATCTTGTCTT--CAT-GTATTGACATGAAGTAAATCAGAGATAGT
1 AGATCTTGTCTTCCCATACTAGTG---TGAAGTAAATCAAAGATAAT
* * *
13907513 AGATCGTGTCTTCCCATACTAGTGTGAAGTAGATCGAAGATA
1 AGATCTTGTCTTCCCATACTAGTGTGAAGTAAATCAAAGATA
13907555 CAGGTCTTAC
Statistics
Matches: 66, Mismatches: 14, Indels: 13
0.71 0.15 0.14
Matches are distributed among these distances:
41 1 0.02
42 2 0.03
43 3 0.05
44 42 0.64
45 11 0.17
46 3 0.05
47 4 0.06
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (44 bp):
AGATCTTGTCTTCCCATACTAGTGTGAAGTAAATCAAAGATAAT
Found at i:13910035 original size:40 final size:40
Alignment explanation
Indices: 13909991--13910134 Score: 128
Period size: 40 Copynumber: 3.5 Consensus size: 40
13909981 TTTCGACACT
*
13909991 TATCTTTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCC
1 TATCTTCCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCC
* ** ** * * *
13910031 TATC-TCCTTGAAGTTGCAGTGGAGTGGATTAAAACATCCAAATCT
1 TATCTTCC-TGAAGTTGCAG-AGAGCAGA-T--CGCAT-CTAGTCC
*
13910076 TATCTTTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCC
1 TATCTTCCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCC
*
13910116 TATCTCCCTGAAGTTGCAG
1 TATCTTCCTGAAGTTGCAG
13910135 TGGAGTGGAT
Statistics
Matches: 77, Mismatches: 20, Indels: 14
0.69 0.18 0.13
Matches are distributed among these distances:
39 2 0.03
40 36 0.47
41 8 0.10
42 1 0.01
43 1 0.01
44 8 0.10
45 19 0.25
46 2 0.03
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.31
Consensus pattern (40 bp):
TATCTTCCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCC
Found at i:13910132 original size:85 final size:85
Alignment explanation
Indices: 13909989--13910171 Score: 348
Period size: 85 Copynumber: 2.2 Consensus size: 85
13909979 GGTTTCGACA
*
13909989 CTTATCTTTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCCTATCTCCTTGAAGTTGCAGTGGA
1 CTTATCTTTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCCTATCTCCCTGAAGTTGCAGTGGA
13910054 GTGGATTAAAACATCCAAAT
66 GTGGATTAAAACATCCAAAT
13910074 CTTATCTTTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCCTATCTCCCTGAAGTTGCAGTGGA
1 CTTATCTTTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCCTATCTCCCTGAAGTTGCAGTGGA
*
13910139 GTGGATTAAAACATCCAGAT
66 GTGGATTAAAACATCCAAAT
13910159 CTTATCTTTCTGA
1 CTTATCTTTCTGA
13910172 TGTCTTATCT
Statistics
Matches: 96, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 96 1.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.32
Consensus pattern (85 bp):
CTTATCTTTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCCTATCTCCCTGAAGTTGCAGTGGA
GTGGATTAAAACATCCAAAT
Found at i:13910211 original size:61 final size:61
Alignment explanation
Indices: 13910116--13910230 Score: 221
Period size: 61 Copynumber: 1.9 Consensus size: 61
13910106 CATCTAGTCC
13910116 TATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACATCCAGATCTTATCTTTCTGATGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACATCCAGATCTTATCTTTCTGATGTCT
*
13910177 TATCTCCTTGAAGTTGCAGTGGAGTGGATTAAAACATCCAGATCTTATCTTTCT
1 TATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACATCCAGATCTTATCTTTCT
13910231 AAAGTTGCAG
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 53 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (61 bp):
TATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACATCCAGATCTTATCTTTCTGATGTCT
Found at i:13911730 original size:3 final size:3
Alignment explanation
Indices: 13911711--13911761 Score: 50
Period size: 3 Copynumber: 17.0 Consensus size: 3
13911701 GTTATATTGC
* * * *
13911711 ATT ATT AGT ATT -GT ATT ATTT ATT ATT ATT TTT ATT ATT ATC ATT
1 ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT
13911756 ATT ATT
1 ATT ATT
13911762 TCTATACATA
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
2 1 0.03
3 34 0.89
4 3 0.08
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:13911833 original size:23 final size:24
Alignment explanation
Indices: 13911779--13911837 Score: 75
Period size: 23 Copynumber: 2.5 Consensus size: 24
13911769 ATATACGCAC
13911779 GTATATATTTTTTATAACATATAT
1 GTATATATTTTTTATAACATATAT
* ** *
13911803 ATGCATATTTTTTTTAA-ATATAT
1 GTATATATTTTTTATAACATATAT
13911826 GTATATATTTTT
1 GTATATATTTTT
13911838 AGACTTTTAT
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
23 15 0.54
24 13 0.46
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.58
Consensus pattern (24 bp):
GTATATATTTTTTATAACATATAT
Found at i:13911858 original size:30 final size:30
Alignment explanation
Indices: 13911812--13911868 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
13911802 TATGCATATT
* *
13911812 TTTTTTAAATATATGTATATATTTTTAGAC
1 TTTTATAAATACATGTATATATTTTTAGAC
13911842 TTTTATAAATACATGTATATATTTTTA
1 TTTTATAAATACATGTATATATTTTTA
13911869 TACATATATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.35, C:0.04, G:0.05, T:0.56
Consensus pattern (30 bp):
TTTTATAAATACATGTATATATTTTTAGAC
Found at i:13911873 original size:18 final size:18
Alignment explanation
Indices: 13911850--13911888 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
13911840 ACTTTTATAA
*
13911850 ATACATGTATATATTTTT
1 ATACATATATATATTTTT
13911868 ATACATATATATATTTTT
1 ATACATATATATATTTTT
13911886 ATA
1 ATA
13911889 TTTTATTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.54
Consensus pattern (18 bp):
ATACATATATATATTTTT
Found at i:13914514 original size:41 final size:42
Alignment explanation
Indices: 13914413--13914571 Score: 121
Period size: 41 Copynumber: 3.7 Consensus size: 42
13914403 ATATCGAACA
* * * *
13914413 ATGCCAACGTCCCAGAC-GTGGTCTTACATGCTAGCTCATAT-CG
1 ATGCCAATGTCCCAGACAG-GGTCTTACACG-TA-ATCAAATACG
*
13914456 ATGCCACTGTCCCAGACAGGGTCTTACACG-AATCAAATACG
1 ATGCCAATGTCCCAGACAGGGTCTTACACGTAATCAAATACG
* * *
13914497 ATGCCAATGTCCTAGACATGGTCTTATACGTAATCACATATATCG
1 ATGCCAATGTCCCAGACAGGGTCTTACACGTAATCA-A-ATA-CG
* *
13914542 ATGAC-ATCATCCCAGAC-GTGGTCTTACACG
1 ATGCCAAT-GTCCCAGACAG-GGTCTTACACG
13914572 AGAACACATA
Statistics
Matches: 94, Mismatches: 14, Indels: 14
0.77 0.11 0.11
Matches are distributed among these distances:
40 5 0.05
41 29 0.31
42 5 0.05
43 26 0.28
44 6 0.06
45 23 0.24
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACAGGGTCTTACACGTAATCAAATACG
Found at i:13915497 original size:28 final size:31
Alignment explanation
Indices: 13915465--13915523 Score: 79
Period size: 28 Copynumber: 2.0 Consensus size: 31
13915455 TGTTTTGTTT
13915465 TTATTATAATAA-CATTAT-AAT-ATATAAA
1 TTATTATAATAACCATTATAAATAATATAAA
* *
13915493 TTATTATTATAACCTTTATAAATAATATAAA
1 TTATTATAATAACCATTATAAATAATATAAA
13915524 AACTATATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 11 0.42
29 5 0.19
30 3 0.12
31 7 0.27
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (31 bp):
TTATTATAATAACCATTATAAATAATATAAA
Found at i:13916650 original size:30 final size:30
Alignment explanation
Indices: 13916589--13916650 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 30
13916579 TTACGGTCGG
* * * *
13916589 TAAAATTTTAATTTAATACTTTATAATTTA
1 TAAAATTTTAAATTAATAATGTATAAATTA
13916619 TAAAATTTTAAATTAATAATGGTA-AAATTA
1 TAAAATTTTAAATTAATAAT-GTATAAATTA
13916649 TA
1 TA
13916651 TTTTGACCTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
30 25 0.93
31 2 0.07
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (30 bp):
TAAAATTTTAAATTAATAATGTATAAATTA
Found at i:13917852 original size:51 final size:52
Alignment explanation
Indices: 13917783--13918005 Score: 138
Period size: 51 Copynumber: 4.4 Consensus size: 52
13917773 TGGCACGGAT
* * * * * **
13917783 TATGTGTAGGCCATTATGTAAAAGAGAAAATGAT-GGTCATGTGTGTAGTAC
1 TATGTGCAGGCTACTATGTAAACGAGATAATGATAGGTCACATGTGTAGTAC
* * * *
13917834 TATGTGCAGGCTACTATGTGTACCG-G--AATGATAGGTCGCACGTGTAGTAC
1 TATGTGCAGGCTACTATGT-AAACGAGATAATGATAGGTCACATGTGTAGTAC
*** * * * * * *
13917884 TATGTGCAGGCTACTATGCGTACCAGATAGT-TTCGATCACGTGTGTAGTAC
1 TATGTGCAGGCTACTATGTAAACGAGATAATGATAGGTCACATGTGTAGTAC
* ** * *
13917935 TATGTGCAGGCTACTACGTGT-ATCGA-ATGGTAAT-GGTCATATGTGTAGTAC
1 TATGTGCAGGCTACTA--TGTAAACGAGATAATGATAGGTCACATGTGTAGTAC
13917986 TATGTGCAGGCTACTATGTA
1 TATGTGCAGGCTACTATGTA
13918006 TACCGAACAT
Statistics
Matches: 132, Mismatches: 31, Indels: 19
0.73 0.17 0.10
Matches are distributed among these distances:
49 10 0.08
50 32 0.24
51 81 0.61
52 7 0.05
53 2 0.02
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.31
Consensus pattern (52 bp):
TATGTGCAGGCTACTATGTAAACGAGATAATGATAGGTCACATGTGTAGTAC
Found at i:13926251 original size:19 final size:19
Alignment explanation
Indices: 13926200--13926284 Score: 64
Period size: 20 Copynumber: 4.2 Consensus size: 19
13926190 ATTACAAAAA
* * *
13926200 AAAAATCAAAGTAATTTTC
1 AAAATTCAAAATAATTTTT
*
13926219 AAAATTTGAAAATAATTTTT
1 AAAA-TTCAAAATAATTTTT
*
13926239 AAAATTCAAAAT-ATTTAT
1 AAAATTCAAAATAATTTTT
13926257 AGAAATTCTAAAATTTATATTTTT
1 A-AAATTC-AAAA--TA-ATTTTT
13926281 AAAA
1 AAAA
13926285 AAAATTATAA
Statistics
Matches: 52, Mismatches: 7, Indels: 10
0.75 0.10 0.14
Matches are distributed among these distances:
18 6 0.12
19 17 0.33
20 19 0.37
22 1 0.02
23 3 0.06
24 6 0.12
ACGTcount: A:0.52, C:0.05, G:0.04, T:0.40
Consensus pattern (19 bp):
AAAATTCAAAATAATTTTT
Found at i:13926272 original size:18 final size:19
Alignment explanation
Indices: 13926227--13926275 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
13926217 TCAAAATTTG
*
13926227 AAAATAATTTTTA-AAATTC
1 AAAAT-ATTTATAGAAATTC
13926246 AAAATATTTATAGAAATTC
1 AAAATATTTATAGAAATTC
*
13926265 TAAA-ATTTATA
1 AAAATATTTATA
13926276 TTTTTAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 13 0.48
19 14 0.52
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (19 bp):
AAAATATTTATAGAAATTC
Found at i:13926313 original size:18 final size:20
Alignment explanation
Indices: 13926266--13926307 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
13926256 TAGAAATTCT
*
13926266 AAAATT-TATATTTTTAAAA
1 AAAATTATAAATTTTTAAAA
13926285 AAAATTATAAATTTTTAAAA
1 AAAATTATAAATTTTTAAAA
13926305 AAA
1 AAA
13926308 TATAAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
AAAATTATAAATTTTTAAAA
Found at i:13926317 original size:21 final size:20
Alignment explanation
Indices: 13926275--13926327 Score: 61
Period size: 21 Copynumber: 2.6 Consensus size: 20
13926265 TAAAATTTAT
* *
13926275 ATTTTTAAAAAAAATTATAA
1 ATTTTTAAAAAAAATAAAAA
13926295 ATTTTTAAAAAAATATAAAAA
1 ATTTTTAAAAAAA-ATAAAAA
* *
13926316 ATGTATAAAAAA
1 ATTTTTAAAAAA
13926328 TTTAATACAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 13 0.46
21 15 0.54
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (20 bp):
ATTTTTAAAAAAAATAAAAA
Found at i:13926633 original size:21 final size:21
Alignment explanation
Indices: 13926609--13926648 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
13926599 ACCTTTTCTA
13926609 AAGTTAAAAGCCAAAACTATC
1 AAGTTAAAAGCCAAAACTATC
*
13926630 AAGTTAAAAGGCAAAACTA
1 AAGTTAAAAGCCAAAACTA
13926649 CGTTATTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.55, C:0.15, G:0.12, T:0.17
Consensus pattern (21 bp):
AAGTTAAAAGCCAAAACTATC
Found at i:13929816 original size:18 final size:19
Alignment explanation
Indices: 13929778--13929820 Score: 63
Period size: 18 Copynumber: 2.3 Consensus size: 19
13929768 TCTAAATGAA
13929778 TTCATTTCTCATTTTTATT
1 TTCATTTCTCATTTTTATT
13929797 TTCATTTCT-ATTTTCT-TT
1 TTCATTTCTCATTTT-TATT
13929815 TTCATT
1 TTCATT
13929821 CTGAAGAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 13 0.57
19 10 0.43
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.70
Consensus pattern (19 bp):
TTCATTTCTCATTTTTATT
Found at i:13933787 original size:3 final size:3
Alignment explanation
Indices: 13933774--13933807 Score: 50
Period size: 3 Copynumber: 10.7 Consensus size: 3
13933764 TCTAAAATGG
13933774 TTC TTC TTTC TTC TTC TTC TTTC TTC TTC TTC TT
1 TTC TTC -TTC TTC TTC TTC -TTC TTC TTC TTC TT
13933808 TCTTAAGTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 23 0.79
4 6 0.21
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (3 bp):
TTC
Done.