Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 48 of 222
Found at i:14291257 original size:21 final size:21
Alignment explanation
Indices: 14291228--14291279 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
14291218 TTAATATTTG
14291228 GAGAAATAAAACAA-AGAAAA
1 GAGAAATAAAACAATAGAAAA
* * *
14291248 TGATAAATAATATAATAGAAAA
1 -GAGAAATAAAACAATAGAAAA
14291270 GAGAAATAAA
1 GAGAAATAAA
14291280 TTTTGTATGG
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
21 19 0.76
22 6 0.24
ACGTcount: A:0.69, C:0.02, G:0.13, T:0.15
Consensus pattern (21 bp):
GAGAAATAAAACAATAGAAAA
Found at i:14291425 original size:36 final size:38
Alignment explanation
Indices: 14291380--14291466 Score: 115
Period size: 39 Copynumber: 2.3 Consensus size: 38
14291370 GGAGTTGTAA
* * *
14291380 GTGACTATTCATCTATATCAC-TAAATGC-TAGGAGTT
1 GTGACTATTCATCTACATAACTTAAATACATAGGAGTT
*
14291416 GTGACTATTCATTTACATAACTTAAATACTATAGGAGTT
1 GTGACTATTCATCTACATAACTTAAATAC-ATAGGAGTT
14291455 GTGACTATTCAT
1 GTGACTATTCAT
14291467 GCATGTGTGT
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
36 18 0.41
37 6 0.14
39 20 0.45
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (38 bp):
GTGACTATTCATCTACATAACTTAAATACATAGGAGTT
Found at i:14291518 original size:32 final size:32
Alignment explanation
Indices: 14291476--14291551 Score: 89
Period size: 32 Copynumber: 2.4 Consensus size: 32
14291466 TGCATGTGTG
* * *
14291476 TAACTTTTCATTTTCAAGTCTCTTCGCATTAT
1 TAACTCTTCATATTCAAGTCTCTTCACATTAT
* **
14291508 TAACTCTTCATATTCAAGTCTTTTCACATTCG
1 TAACTCTTCATATTCAAGTCTCTTCACATTAT
*
14291540 TAACTTTTCATA
1 TAACTCTTCATA
14291552 ATTTATTTTG
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.25, C:0.22, G:0.05, T:0.47
Consensus pattern (32 bp):
TAACTCTTCATATTCAAGTCTCTTCACATTAT
Found at i:14295915 original size:36 final size:39
Alignment explanation
Indices: 14295868--14295954 Score: 117
Period size: 39 Copynumber: 2.3 Consensus size: 39
14295858 TCACATATAA
* * *
14295868 GTGACTATTCATCTATATCAC-TAAAT-GT-TAGGAGTT
1 GTGACTATTCATCTACATAACTTAAATACTATAGGAGTT
*
14295904 GTGACTATTCATTTACATAACTTAAATACTATAGGAGTT
1 GTGACTATTCATCTACATAACTTAAATACTATAGGAGTT
14295943 GTGACTATTCAT
1 GTGACTATTCAT
14295955 GCATGTGTGT
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
36 18 0.41
37 5 0.11
38 1 0.02
39 20 0.45
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.39
Consensus pattern (39 bp):
GTGACTATTCATCTACATAACTTAAATACTATAGGAGTT
Found at i:14296006 original size:32 final size:32
Alignment explanation
Indices: 14295964--14296039 Score: 89
Period size: 32 Copynumber: 2.4 Consensus size: 32
14295954 TGCATGTGTG
* * *
14295964 TAACTTTTCATCTTCAAGTCTCTTCGCATTAT
1 TAACTCTTCATATTCAAGTCTCTTCACATTAT
* **
14295996 TAACTCTTCATATTCAAGTCTTTTCACATTCG
1 TAACTCTTCATATTCAAGTCTCTTCACATTAT
*
14296028 TAACTTTTCATA
1 TAACTCTTCATA
14296040 ATTTATTTTG
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.25, C:0.24, G:0.05, T:0.46
Consensus pattern (32 bp):
TAACTCTTCATATTCAAGTCTCTTCACATTAT
Found at i:14297468 original size:2 final size:2
Alignment explanation
Indices: 14297461--14297485 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
14297451 TTTTTATGAA
14297461 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
14297486 AAAGTGATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14297801 original size:26 final size:26
Alignment explanation
Indices: 14297772--14297829 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
14297762 GAGCTTATTG
*
14297772 TCTTAATTAGTTTATTCAGTTTAAAA
1 TCTTAATCAGTTTATTCAGTTTAAAA
14297798 TCTTAATCAGTTTATTCAGTTTAAAA
1 TCTTAATCAGTTTATTCAGTTTAAAA
*
14297824 TGTTAA
1 TCTTAA
14297830 AACCAAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.34, C:0.09, G:0.09, T:0.48
Consensus pattern (26 bp):
TCTTAATCAGTTTATTCAGTTTAAAA
Found at i:14309237 original size:7 final size:7
Alignment explanation
Indices: 14309225--14309249 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14309215 TAATGTAACC
14309225 AAATTAG
1 AAATTAG
14309232 AAATTAG
1 AAATTAG
14309239 AAATTAG
1 AAATTAG
14309246 AAAT
1 AAAT
14309250 CACTTTCAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.00, G:0.12, T:0.28
Consensus pattern (7 bp):
AAATTAG
Found at i:14309642 original size:7 final size:7
Alignment explanation
Indices: 14309630--14309676 Score: 85
Period size: 7 Copynumber: 6.7 Consensus size: 7
14309620 TAAGATGAAA
14309630 AGAAAAG
1 AGAAAAG
14309637 AGAAAAG
1 AGAAAAG
14309644 AGAAAAG
1 AGAAAAG
14309651 AGAAAAG
1 AGAAAAG
*
14309658 GGAAAAG
1 AGAAAAG
14309665 AGAAAAG
1 AGAAAAG
14309672 AGAAA
1 AGAAA
14309677 GAGCAATTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
7 38 1.00
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (7 bp):
AGAAAAG
Found at i:14309837 original size:23 final size:22
Alignment explanation
Indices: 14309807--14309849 Score: 77
Period size: 23 Copynumber: 1.9 Consensus size: 22
14309797 TTTAGATCGA
14309807 AAGAAGAGAAAAGAAATGAAAAG
1 AAGAAGAGAAAAGAAA-GAAAAG
14309830 AAGAAGAGAAAAGAAAGAAA
1 AAGAAGAGAAAAGAAAGAAA
14309850 TAATATATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.72, C:0.00, G:0.26, T:0.02
Consensus pattern (22 bp):
AAGAAGAGAAAAGAAAGAAAAG
Found at i:14311684 original size:16 final size:16
Alignment explanation
Indices: 14311663--14311700 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
14311653 ATTATCGATG
14311663 TTAATATTTTAAAAAT
1 TTAATATTTTAAAAAT
* *
14311679 TTAATATTTTTAGAAT
1 TTAATATTTTAAAAAT
14311695 TTAATA
1 TTAATA
14311701 CTCGAGCTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (16 bp):
TTAATATTTTAAAAAT
Found at i:14313220 original size:4 final size:4
Alignment explanation
Indices: 14313211--14313241 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
14313201 TATATTTTTT
14313211 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
14313242 TATATATCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.52, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:14328369 original size:31 final size:33
Alignment explanation
Indices: 14328318--14328396 Score: 99
Period size: 33 Copynumber: 2.4 Consensus size: 33
14328308 CATATTTAAA
* *
14328318 AAATATATAAAAAAAGTTCT-AAAATATGTGTAT
1 AAATAT-TAAAAAAAGTTCTAAAAATATATATAT
*
14328351 AAATTTTAAAAAAA-TTCTAAAAAATATATATAT
1 AAATATTAAAAAAAGTTCT-AAAAATATATATAT
14328384 AAATATTAAAAAA
1 AAATATTAAAAAA
14328397 TAAGAAATAT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
31 4 0.10
32 8 0.20
33 28 0.70
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.33
Consensus pattern (33 bp):
AAATATTAAAAAAAGTTCTAAAAATATATATAT
Found at i:14328519 original size:22 final size:22
Alignment explanation
Indices: 14328494--14328535 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
14328484 ATATAAAAAA
14328494 TTTT-AAAAAATTAAAAATATAT
1 TTTTCAAAAAA-TAAAAATATAT
14328516 TTTTCAAAAAATAAAAATAT
1 TTTTCAAAAAATAAAAATAT
14328536 TTAAAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (22 bp):
TTTTCAAAAAATAAAAATATAT
Found at i:14341576 original size:68 final size:68
Alignment explanation
Indices: 14341423--14341568 Score: 229
Period size: 68 Copynumber: 2.1 Consensus size: 68
14341413 CTTATGTTAT
* * * *
14341423 GATCTTAAATTAGCTAACCTTTATAATATCAACTATAAATGTAGGTCAGCGAGCTGTTTAGGAGT
1 GATCTTAAATTAGCTAACCTATATAATATCAACTACAAACGTAGGTCAACGAGCTGTTTAGGAGT
14341488 TGC
66 TGC
* * *
14341491 AATCTTAAATTAGCTAACCTATATAATATCAGCTACAAACGTAGGTCAACGAGTTGTTTAGGAGT
1 GATCTTAAATTAGCTAACCTATATAATATCAACTACAAACGTAGGTCAACGAGCTGTTTAGGAGT
14341556 TGC
66 TGC
14341559 GATCTTAAAT
1 GATCTTAAAT
14341569 CATCTAACTC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
68 70 1.00
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.33
Consensus pattern (68 bp):
GATCTTAAATTAGCTAACCTATATAATATCAACTACAAACGTAGGTCAACGAGCTGTTTAGGAGT
TGC
Found at i:14341861 original size:105 final size:104
Alignment explanation
Indices: 14341486--14341876 Score: 466
Period size: 105 Copynumber: 3.8 Consensus size: 104
14341476 CTGTTTAGGA
* * * * *** *
14341486 GTTGCAATCTTAAATTAGCTAACCTATATAATATCAGCTACAAACGTAGGTCAACGAGTTGTTTA
1 GTTGCGATCTTAAATCAGCTAACCTTTATAATATCAGTTGTGAACGTAGGTCAACGAGCTGTTTA
* *
14341551 GGAGTTGCGATCTTAAATCATCTAACTCAAATAAGCTTAG
66 GGAGTTGCGATCTTAAAT-AACTAACTCAAATAAACTTAG
* *
14341591 GTTGCGATCTTAAATCAACTAACCTTTATAATATCAGTTGTGAACGTAGGT-TA-GAGCTGTTTA
1 GTTGCGATCTTAAATCAGCTAACCTTTATAATATCAGTTGTGAACGTAGGTCAACGAGCTGTTTA
**
14341654 GGAGTTATGATCTTAAATCAACTAACTCAAATAAACTTAG
66 GGAGTTGCGATCTTAAAT-AACTAACTCAAATAAACTTAG
** * * * *
14341694 GTTGTAATATT-AATCAGCTAACCTTTATAATATCAGCTAG-GAACGTAGGTCAGCGAGTTGTTT
1 GTTGCGATCTTAAATCAGCTAACCTTTATAATATCAG-TTGTGAACGTAGGTCAACGAGCTGTTT
* * *
14341757 AAGAGTTGCGTTATTAAATAAGCTAACTCAAATAAACTTAG
65 AGGAGTTGCGATCTTAAATAA-CTAACTCAAATAAACTTAG
* * * *
14341798 GCTGCGATCTTAAATCATCTAACCTTTATAATATCAGTTGTGAACATAGGTCAATGAGCTGTTTA
1 GTTGCGATCTTAAATCAGCTAACCTTTATAATATCAGTTGTGAACGTAGGTCAACGAGCTGTTTA
*
14341863 GGAGTTGCAATCTT
66 GGAGTTGCGATCTT
14341877 CATGCATGAC
Statistics
Matches: 239, Mismatches: 41, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
102 34 0.14
103 57 0.24
104 51 0.21
105 97 0.41
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.33
Consensus pattern (104 bp):
GTTGCGATCTTAAATCAGCTAACCTTTATAATATCAGTTGTGAACGTAGGTCAACGAGCTGTTTA
GGAGTTGCGATCTTAAATAACTAACTCAAATAAACTTAG
Found at i:14342691 original size:27 final size:27
Alignment explanation
Indices: 14342623--14342701 Score: 99
Period size: 26 Copynumber: 3.0 Consensus size: 27
14342613 ACTAACCTAT
* *
14342623 TAATTTAAATTCCTAATTATCTTAACTA
1 TAATTTAAACTCCTAATTATCATAA-TA
*
14342651 -AATTAAAACT-CTAATTATCATAATA
1 TAATTTAAACTCCTAATTATCATAATA
*
14342676 TAATTTAAACTCCTAATTATCCTAAT
1 TAATTTAAACTCCTAATTATCATAAT
14342702 TTACACAAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
25 2 0.05
26 21 0.48
27 21 0.48
ACGTcount: A:0.43, C:0.15, G:0.00, T:0.42
Consensus pattern (27 bp):
TAATTTAAACTCCTAATTATCATAATA
Found at i:14343378 original size:7 final size:7
Alignment explanation
Indices: 14343368--14343393 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
14343358 TAAGTTATAA
14343368 AAAATTT
1 AAAATTT
14343375 AAAATTT
1 AAAATTT
14343382 AAAATTT
1 AAAATTT
14343389 AAAAT
1 AAAAT
14343394 CTCAATTAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (7 bp):
AAAATTT
Found at i:14345111 original size:25 final size:25
Alignment explanation
Indices: 14345083--14345142 Score: 95
Period size: 25 Copynumber: 2.4 Consensus size: 25
14345073 CTTCTCCTAG
*
14345083 TTAAACTTTGTTTTTAGTTTCTCAC
1 TTAAACTTTGTTTTTAGTTTCCCAC
14345108 TTAAA-TTATGTTTTTAGTTTCCCAC
1 TTAAACTT-TGTTTTTAGTTTCCCAC
14345133 TTAAACTTTG
1 TTAAACTTTG
14345143 ATTAGTGTAG
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 2 0.06
25 28 0.88
26 2 0.06
ACGTcount: A:0.23, C:0.15, G:0.08, T:0.53
Consensus pattern (25 bp):
TTAAACTTTGTTTTTAGTTTCCCAC
Found at i:14351482 original size:23 final size:23
Alignment explanation
Indices: 14351448--14351511 Score: 101
Period size: 23 Copynumber: 2.8 Consensus size: 23
14351438 CTACCATGTT
*
14351448 TTGGACAGCATTTATATATCAAA
1 TTGGACAGCATTTATACATCAAA
*
14351471 TTGGACATCATTTATACATCAAA
1 TTGGACAGCATTTATACATCAAA
*
14351494 TTGGACAGCATTAATACA
1 TTGGACAGCATTTATACA
14351512 ATTTAAATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.33
Consensus pattern (23 bp):
TTGGACAGCATTTATACATCAAA
Found at i:14351888 original size:57 final size:57
Alignment explanation
Indices: 14351827--14352007 Score: 242
Period size: 57 Copynumber: 3.2 Consensus size: 57
14351817 CTATTCATGC
* *
14351827 GTCTTTTCTTACAGGGAATATTTACTGTTTTTGTTAGAGAATATTTTCTGCTCACTT
1 GTCTTTTCTTGCAGGGAATATTTACTGTTTTTGTCAGAGAATATTTTCTGCTCACTT
* ** * *
14351884 GTCTTTTCTTGCAGGGAATATTTATTGTTTACGCCAGAGAATA-TTTCATGTTCACTT
1 GTCTTTTCTTGCAGGGAATATTTACTGTTTTTGTCAGAGAATATTTTC-TGCTCACTT
* *
14351941 GTCTTTTCTTGCA-AGAATATTTACTGTTTTT-TCCAGAGAATATTTCCTGCTCACTT
1 GTCTTTTCTTGCAGGGAATATTTACTGTTTTTGT-CAGAGAATATTTTCTGCTCACTT
14351997 GTCTTTTCTTG
1 GTCTTTTCTTG
14352008 TATCATCTTT
Statistics
Matches: 107, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
56 46 0.43
57 61 0.57
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.48
Consensus pattern (57 bp):
GTCTTTTCTTGCAGGGAATATTTACTGTTTTTGTCAGAGAATATTTTCTGCTCACTT
Found at i:14359318 original size:23 final size:23
Alignment explanation
Indices: 14359288--14359481 Score: 228
Period size: 23 Copynumber: 8.4 Consensus size: 23
14359278 GTCTGGTATT
14359288 ACAGCATTAATACATCAAATTGG
1 ACAGCATTAATACATCAAATTGG
* *
14359311 ACAGCATTTATACATCAAATTGC
1 ACAGCATTAATACATCAAATTGG
* * *
14359334 ATAACATTAATACATTAAATTGG
1 ACAGCATTAATACATCAAATTGG
*
14359357 ACAGCATTAATATATCAAATTGG
1 ACAGCATTAATACATCAAATTGG
* * * *
14359380 ATAGCATTTATGCATTAAATTGG
1 ACAGCATTAATACATCAAATTGG
* *
14359403 ACAACATTAATACATCAAATTTG
1 ACAGCATTAATACATCAAATTGG
*
14359426 ACAGCATTTATACATCAAATTGG
1 ACAGCATTAATACATCAAATTGG
* *
14359449 GCAGCATTAATATGC-TCAAAATGG
1 ACAGCATTAATA--CATCAAATTGG
14359473 ACAGCATTA
1 ACAGCATTA
14359482 TAACATGTAA
Statistics
Matches: 140, Mismatches: 29, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
23 123 0.88
24 16 0.11
25 1 0.01
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.30
Consensus pattern (23 bp):
ACAGCATTAATACATCAAATTGG
Found at i:14360250 original size:41 final size:40
Alignment explanation
Indices: 14360192--14360321 Score: 136
Period size: 41 Copynumber: 3.2 Consensus size: 40
14360182 TCGTAAAACC
* * * *
14360192 GAAGCTATTATAATCTCGTACACTAAGTGCCTTACATAGCT
1 GAAGCTA-TATCATCTCGCACACTAAGTGCCATAAATAGCT
*
14360233 GAAGCTATATCAGTCTCGCACACTAAGTGCCATATATAG-T
1 GAAGCTATATCA-TCTCGCACACTAAGTGCCATAAATAGCT
* ** * *
14360273 CGAAGCTATTTCAAATCGCACACTAAGTGCAATAAATAGCA
1 -GAAGCTATATCATCTCGCACACTAAGTGCCATAAATAGCT
14360314 GAAGCTAT
1 GAAGCTAT
14360322 CCCAAATTTC
Statistics
Matches: 76, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
40 35 0.46
41 41 0.54
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (40 bp):
GAAGCTATATCATCTCGCACACTAAGTGCCATAAATAGCT
Found at i:14360318 original size:40 final size:40
Alignment explanation
Indices: 14360211--14360321 Score: 125
Period size: 40 Copynumber: 2.7 Consensus size: 40
14360201 ATAATCTCGT
* * **
14360211 ACACTAAGTGCCTTACATAGCTGAAGCTATATCAGTCTCGC
1 ACACTAAGTGCCATAAATAGC-GAAGCTATATCAGAATCGC
* *
14360252 ACACTAAGTGCCATATATAGTCGAAGCTATTTCA-AATCGC
1 ACACTAAGTGCCATAAATAG-CGAAGCTATATCAGAATCGC
*
14360292 ACACTAAGTGCAATAAATAGCAGAAGCTAT
1 ACACTAAGTGCCATAAATAGC-GAAGCTAT
14360322 CCCAAATTTC
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
39 1 0.02
40 30 0.49
41 29 0.48
42 1 0.02
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.25
Consensus pattern (40 bp):
ACACTAAGTGCCATAAATAGCGAAGCTATATCAGAATCGC
Found at i:14360328 original size:40 final size:40
Alignment explanation
Indices: 14360248--14360355 Score: 112
Period size: 40 Copynumber: 2.7 Consensus size: 40
14360238 TATATCAGTC
* * **
14360248 TCGCACACTAAGTGCCATATATAGTCGAAGCTATTTCAAA
1 TCGCACACTAAGTGCAATAAATAGTCGAAGCTATCCCAAA
14360288 TCGCACACTAAGTGCAATAAATAG-CAGAAGCTATCCCAAA
1 TCGCACACTAAGTGCAATAAATAGTC-GAAGCTATCCCAAA
** * *
14360328 TTTCATACTAAGTGCTAA-AGATAGTCGA
1 TCGCACACTAAGTGC-AATAAATAGTCGA
14360356 TTTATCGTTA
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
39 1 0.02
40 53 0.93
41 3 0.05
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (40 bp):
TCGCACACTAAGTGCAATAAATAGTCGAAGCTATCCCAAA
Found at i:14362771 original size:64 final size:64
Alignment explanation
Indices: 14362668--14362788 Score: 181
Period size: 64 Copynumber: 1.9 Consensus size: 64
14362658 AGCCTATATT
* *
14362668 AGGATGCTCATAAAGAGCTGCAGTATGTCTACAATACATGCAAGATCAATACCGATCATATAAC
1 AGGATGCTCACAAAGAGCTGCAGTATGTCTACAAAACATGCAAGATCAATACCGATCATATAAC
* * *
14362732 AGGATGCTCACAAAGAGCTGC-GATATTTCTGCAAAACATGCAGGATCAATACCGATC
1 AGGATGCTCACAAAGAGCTGCAG-TATGTCTACAAAACATGCAAGATCAATACCGATC
14362789 GAGATGCTCG
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
63 1 0.02
64 50 0.98
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.22
Consensus pattern (64 bp):
AGGATGCTCACAAAGAGCTGCAGTATGTCTACAAAACATGCAAGATCAATACCGATCATATAAC
Found at i:14363185 original size:11 final size:11
Alignment explanation
Indices: 14363169--14363201 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
14363159 TACTTTAATA
*
14363169 CAATTCACATT
1 CAATTCACATC
14363180 CAATTC-CATC
1 CAATTCACATC
14363190 CAATTCACATC
1 CAATTCACATC
14363201 C
1 C
14363202 TAGGAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.33, C:0.36, G:0.00, T:0.30
Consensus pattern (11 bp):
CAATTCACATC
Found at i:14367305 original size:34 final size:33
Alignment explanation
Indices: 14367201--14367309 Score: 112
Period size: 34 Copynumber: 3.2 Consensus size: 33
14367191 AATGTCACCC
*
14367201 AATGAGTTAGGATATGATTTTTCTCATCCTTAAA
1 AATGAGTTAGGATATGA-TTTTCTCATCCTCAAA
* ** * * **
14367235 AATGAGTTTGTCCTTTGATTTT-TAAAACTCAAA
1 AATGAGTTAG-GATATGATTTTCTCATCCTCAAA
14367268 AATGAGTTAGGATATGATGTTTCTCATCCTCAAA
1 AATGAGTTAGGATATGAT-TTTCTCATCCTCAAA
14367302 AATGAGTT
1 AATGAGTT
14367310 TGTCCTTTGA
Statistics
Matches: 57, Mismatches: 15, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
32 5 0.09
33 19 0.33
34 29 0.51
35 4 0.07
ACGTcount: A:0.33, C:0.12, G:0.16, T:0.39
Consensus pattern (33 bp):
AATGAGTTAGGATATGATTTTCTCATCCTCAAA
Found at i:14367309 original size:67 final size:67
Alignment explanation
Indices: 14367201--14367332 Score: 246
Period size: 67 Copynumber: 2.0 Consensus size: 67
14367191 AATGTCACCC
* *
14367201 AATGAGTTAGGATATGATTTTTCTCATCCTTAAAAATGAGTTTGTCCTTTGATTTTTAAAACTCA
1 AATGAGTTAGGATATGATGTTTCTCATCCTCAAAAATGAGTTTGTCCTTTGATTTTTAAAACTCA
14367266 AA
66 AA
14367268 AATGAGTTAGGATATGATGTTTCTCATCCTCAAAAATGAGTTTGTCCTTTGATTTTTAAAACTCA
1 AATGAGTTAGGATATGATGTTTCTCATCCTCAAAAATGAGTTTGTCCTTTGATTTTTAAAACTCA
14367333 TACAATGAAG
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 63 1.00
ACGTcount: A:0.32, C:0.13, G:0.14, T:0.41
Consensus pattern (67 bp):
AATGAGTTAGGATATGATGTTTCTCATCCTCAAAAATGAGTTTGTCCTTTGATTTTTAAAACTCA
AA
Found at i:14367340 original size:34 final size:33
Alignment explanation
Indices: 14367232--14367332 Score: 114
Period size: 33 Copynumber: 3.0 Consensus size: 33
14367222 TCTCATCCTT
14367232 AAAAATGAGTTTGTCCTTTGATTTTTAAAACTC
1 AAAAATGAGTTTGTCCTTTGATTTTTAAAACTC
* ** * * **
14367265 AAAAATGAGTTAG-GATATGATGTTTCTCATCCTC
1 AAAAATGAGTTTGTCCTTTGAT-TTT-TAAAACTC
14367299 AAAAATGAGTTTGTCCTTTGATTTTTAAAACTC
1 AAAAATGAGTTTGTCCTTTGATTTTTAAAACTC
14367332 A
1 A
14367333 TACAATGAAG
Statistics
Matches: 51, Mismatches: 14, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
32 5 0.10
33 21 0.41
34 20 0.39
35 5 0.10
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.40
Consensus pattern (33 bp):
AAAAATGAGTTTGTCCTTTGATTTTTAAAACTC
Found at i:14367751 original size:20 final size:20
Alignment explanation
Indices: 14367738--14367775 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
14367728 AAAATAATTT
14367738 ATAAAATATTAAAATAAAGA
1 ATAAAATATTAAAATAAAGA
*
14367758 ATCAAATATTAAAATAAA
1 ATAAAATATTAAAATAAA
14367776 AATGAAATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (20 bp):
ATAAAATATTAAAATAAAGA
Found at i:14369667 original size:45 final size:45
Alignment explanation
Indices: 14369567--14369680 Score: 131
Period size: 45 Copynumber: 2.5 Consensus size: 45
14369557 CAATTTGCCC
* * *
14369567 CACTGTAACTTTAGAGGGATAAGATTTGATATCTTCAACCTGCTG
1 CACTGTAACTTCAGAGAGATAAGATTTGATATCTTCAACCTGCTA
* ** *
14369612 CATTGTAACTTCAGAGAGATAA-ATTTTGATATCTTCAGTCTGTTA
1 CACTGTAACTTCAGAGAGATAAGA-TTTGATATCTTCAACCTGCTA
* *
14369657 CACTGCAACTTCAGGGAGATAAGA
1 CACTGTAACTTCAGAGAGATAAGA
14369681 CTTGTTATAG
Statistics
Matches: 57, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
44 1 0.02
45 55 0.96
46 1 0.02
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (45 bp):
CACTGTAACTTCAGAGAGATAAGATTTGATATCTTCAACCTGCTA
Found at i:14369762 original size:44 final size:45
Alignment explanation
Indices: 14369708--14369899 Score: 105
Period size: 44 Copynumber: 4.2 Consensus size: 45
14369698 AATTCGACCT
* * * *
14369708 ACTGTAACTTCAGAGG-TATAGGATTCATCAT-TTTAATCTGTTCC
1 ACTGCAACTTCAGAGGAGATAGGATTCAT-ATCTTTAACCTGCTCC
* **
14369752 ACTGCAACTTC-GGGGAGATAGGATTTGTATCTTTAACCTGCTCC
1 ACTGCAACTTCAGAGGAGATAGGATTCATATCTTTAACCTGCTCC
* *
14369796 ACTACAACTTCAGA-GAGAT-GAGA-TCTATAATTTAGCTTTAATCTGCTCC
1 ACTGCAACTTCAGAGGAGATAG-GATTC-AT-A--T--CTTTAACCTGCTCC
* **
14369845 ACTGCAACTTCAG-GGAAAT-GAGATTTGC-TATCTTTAGTCTGCTCC
1 ACTGCAACTTCAGAGGAGATAG-GA-TT-CATATCTTTAACCTGCTCC
*
14369890 ACTACAACTT
1 ACTGCAACTT
14369900 TAGGGATATA
Statistics
Matches: 118, Mismatches: 16, Indels: 27
0.73 0.10 0.17
Matches are distributed among these distances:
43 7 0.06
44 48 0.41
45 24 0.20
47 2 0.02
49 34 0.29
50 1 0.01
51 1 0.01
52 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (45 bp):
ACTGCAACTTCAGAGGAGATAGGATTCATATCTTTAACCTGCTCC
Found at i:14371363 original size:47 final size:47
Alignment explanation
Indices: 14371291--14371380 Score: 135
Period size: 47 Copynumber: 1.9 Consensus size: 47
14371281 TCTTTTTCTA
*
14371291 TTTTTTTACGACTCAAAGCACCCTTTGTGGATTTTCTCCTTGGTCTT
1 TTTTTTTACGACTCAAAGCACCCTTTGTGGATTTTCACCTTGGTCTT
* * * *
14371338 TTTTTTTAGGACTCAAAGCATCCTTTTTGGGTTTTCACCTTGG
1 TTTTTTTACGACTCAAAGCACCCTTTGTGGATTTTCACCTTGG
14371381 CCCCTTCTCC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 38 1.00
ACGTcount: A:0.16, C:0.21, G:0.17, T:0.47
Consensus pattern (47 bp):
TTTTTTTACGACTCAAAGCACCCTTTGTGGATTTTCACCTTGGTCTT
Found at i:14378526 original size:19 final size:19
Alignment explanation
Indices: 14378485--14378530 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
14378475 GGTGGACTTT
* *
14378485 AATGCAAATGATGTAATCT
1 AATGCAAATGATGAAATCG
14378504 AATGCAAATGCATGAAAT-G
1 AATGCAAATG-ATGAAATCG
14378523 AATGCAAA
1 AATGCAAA
14378531 AAGGCGTCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.48, C:0.11, G:0.17, T:0.24
Consensus pattern (19 bp):
AATGCAAATGATGAAATCG
Found at i:14384946 original size:20 final size:20
Alignment explanation
Indices: 14384933--14384970 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
14384923 AAAATAATTT
14384933 ATAAAATATTAAAATAAAGA
1 ATAAAATATTAAAATAAAGA
*
14384953 ATCAAATATTAAAATAAA
1 ATAAAATATTAAAATAAA
14384971 AATGAAATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (20 bp):
ATAAAATATTAAAATAAAGA
Found at i:14390654 original size:15 final size:15
Alignment explanation
Indices: 14390634--14390665 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
14390624 CCTCGCAACA
14390634 CACGCTCCTCCACGC
1 CACGCTCCTCCACGC
*
14390649 CACGCTCCTCCAGGC
1 CACGCTCCTCCACGC
14390664 CA
1 CA
14390666 TACCTGCAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.56, G:0.16, T:0.12
Consensus pattern (15 bp):
CACGCTCCTCCACGC
Found at i:14390943 original size:13 final size:13
Alignment explanation
Indices: 14390925--14390949 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14390915 TGATTGCAGA
14390925 TTTTTCTTCTTTC
1 TTTTTCTTCTTTC
14390938 TTTTTCTTCTTT
1 TTTTTCTTCTTT
14390950 GGATTCTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTTCTTCTTTC
Found at i:14391803 original size:24 final size:24
Alignment explanation
Indices: 14391767--14391836 Score: 83
Period size: 24 Copynumber: 2.9 Consensus size: 24
14391757 CATATTTTTG
14391767 AAGTTATCG-TGTATTATTATTCTAA
1 AAGTTAT-GTTGTATTATTATT-TAA
*
14391792 AA-TTAT-TATGTATTATTACTTAA
1 AAGTTATGT-TGTATTATTATTTAA
14391815 AAGTTATGTTGTATTATTATTT
1 AAGTTATGTTGTATTATTATTT
14391837 TATTATTTGT
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
23 5 0.13
24 31 0.79
25 3 0.08
ACGTcount: A:0.33, C:0.04, G:0.10, T:0.53
Consensus pattern (24 bp):
AAGTTATGTTGTATTATTATTTAA
Found at i:14393609 original size:16 final size:16
Alignment explanation
Indices: 14393588--14393655 Score: 127
Period size: 16 Copynumber: 4.2 Consensus size: 16
14393578 TTTGGTTCGC
14393588 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
14393604 TGTATTAGATTAGAGG
1 TGTATTGGATTAGAGG
14393620 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
14393636 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
14393652 TGTA
1 TGTA
14393656 ATAGCAAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.26, C:0.00, G:0.35, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:14393903 original size:16 final size:16
Alignment explanation
Indices: 14393866--14393907 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
14393856 TTAATCATAT
*
14393866 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
14393882 TT-AAATATATTATAA
1 TTAAAATATATTATAA
14393897 TTAAAATATAT
1 TTAAAATATAT
14393908 AATTTAGTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:14394034 original size:14 final size:15
Alignment explanation
Indices: 14393985--14394036 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
14393975 ATTAAATATA
14393985 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
14394000 TATTAAATATATTAT
1 AATTAAATATATTAT
14394015 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
14394028 AATTTAATA
1 AATTAAATA
14394037 AAATTATTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:14403127 original size:27 final size:26
Alignment explanation
Indices: 14403096--14403150 Score: 83
Period size: 27 Copynumber: 2.1 Consensus size: 26
14403086 TAACTAAAAT
14403096 TAAATTGAATTAGAGAAACATATTAAA
1 TAAATTGAATTAGAG-AACATATTAAA
* *
14403123 TAAATTGGATTAGAGAATATATTAAA
1 TAAATTGAATTAGAGAACATATTAAA
14403149 TA
1 TA
14403151 TGAATGAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 12 0.46
27 14 0.54
ACGTcount: A:0.53, C:0.02, G:0.13, T:0.33
Consensus pattern (26 bp):
TAAATTGAATTAGAGAACATATTAAA
Found at i:14404302 original size:6 final size:6
Alignment explanation
Indices: 14404294--14404328 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
14404284 GCTAAAACAA
*
14404294 CTTCAA CTTCAC CTTCAC CTTCAC CTTCAC CTTCA
1 CTTCAC CTTCAC CTTCAC CTTCAC CTTCAC CTTCA
14404329 ATTGCTGTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.20, C:0.46, G:0.00, T:0.34
Consensus pattern (6 bp):
CTTCAC
Found at i:14412328 original size:16 final size:17
Alignment explanation
Indices: 14412289--14412330 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
14412279 GATTGCTAAT
14412289 ATTTTAATTTGTTTACA
1 ATTTTAATTTGTTTACA
* *
14412306 ATATTAATTT-TTTATA
1 ATTTTAATTTGTTTACA
14412322 ATTTTAATT
1 ATTTTAATT
14412331 CAATATACTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 13 0.59
17 9 0.41
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (17 bp):
ATTTTAATTTGTTTACA
Found at i:14412383 original size:5 final size:5
Alignment explanation
Indices: 14412373--14412406 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
14412363 TAAAAATCTA
14412373 AATAT AATAT AATAT AATAT AATAT AATAT AATA
1 AATAT AATAT AATAT AATAT AATAT AATAT AATA
14412407 ATCAAATTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
AATAT
Found at i:14414320 original size:14 final size:13
Alignment explanation
Indices: 14414298--14414327 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
14414288 TAATTAATCA
14414298 TAATTAATTTAAT
1 TAATTAATTTAAT
14414311 TAATTAAATTTAAT
1 TAATT-AATTTAAT
14414325 TAA
1 TAA
14414328 AAAATAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
TAATTAATTTAAT
Found at i:14420995 original size:4 final size:4
Alignment explanation
Indices: 14420988--14421016 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
14420978 TAATTAAACA
14420988 TAAT TAAT TAAT TAAT T-AT TAAT TAAT TA
1 TAAT TAAT TAAT TAAT TAAT TAAT TAAT TA
14421017 GGACTTAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
3 3 0.12
4 21 0.88
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TAAT
Found at i:14422443 original size:18 final size:18
Alignment explanation
Indices: 14422420--14422462 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
14422410 ACCCAATCTA
**
14422420 AACCCAAGTATTCAACCC
1 AACCCAAGTACCCAACCC
*
14422438 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
14422456 AACCCAA
1 AACCCAA
14422463 TCATAAAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.42, C:0.44, G:0.02, T:0.12
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:14422584 original size:9 final size:9
Alignment explanation
Indices: 14422570--14422645 Score: 100
Period size: 9 Copynumber: 8.4 Consensus size: 9
14422560 GTAGTGATTC
*
14422570 AATTTGGTT
1 AATTCGGTT
*
14422579 AATTTGGTT
1 AATTCGGTT
*
14422588 AATTCGGGT
1 AATTCGGTT
14422597 AATTCAGG-T
1 AATTC-GGTT
14422606 AATTCGGTT
1 AATTCGGTT
*
14422615 AATTCGGGT
1 AATTCGGTT
14422624 AATTCGGTT
1 AATTCGGTT
14422633 AATTCGGTT
1 AATTCGGTT
14422642 AATT
1 AATT
14422646 TTTAACCAAA
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
8 2 0.03
9 57 0.93
10 2 0.03
ACGTcount: A:0.25, C:0.08, G:0.24, T:0.43
Consensus pattern (9 bp):
AATTCGGTT
Found at i:14422608 original size:27 final size:27
Alignment explanation
Indices: 14422570--14422645 Score: 118
Period size: 27 Copynumber: 2.8 Consensus size: 27
14422560 GTAGTGATTC
* *
14422570 AATTTGGTTAATTTGGTTAATTCGGGT
1 AATTCGGTTAATTCGGTTAATTCGGGT
14422597 AATTCAGG-TAATTCGGTTAATTCGGGT
1 AATTC-GGTTAATTCGGTTAATTCGGGT
14422624 AATTCGGTTAATTCGGTTAATT
1 AATTCGGTTAATTCGGTTAATT
14422646 TTTAACCAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
26 2 0.04
27 41 0.91
28 2 0.04
ACGTcount: A:0.25, C:0.08, G:0.24, T:0.43
Consensus pattern (27 bp):
AATTCGGTTAATTCGGTTAATTCGGGT
Found at i:14423257 original size:51 final size:51
Alignment explanation
Indices: 14423202--14423299 Score: 135
Period size: 51 Copynumber: 1.9 Consensus size: 51
14423192 AATTATTTTC
*
14423202 TTAATTTCCTCTCAATTTGCT-TCCAAATTTCTCTCAAATCCATATTTAATT
1 TTAATTTCCTCTCAATTTCCTCT-CAAATTTCTCTCAAATCCATATTTAATT
* * * *
14423253 TTAATTTTCTCTCAATTTCCTCTTAAATTTCTCTTAAATCCCTATTT
1 TTAATTTCCTCTCAATTTCCTCTCAAATTTCTCTCAAATCCATATTT
14423300 TTAATTATTT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
51 40 0.98
52 1 0.02
ACGTcount: A:0.26, C:0.23, G:0.01, T:0.50
Consensus pattern (51 bp):
TTAATTTCCTCTCAATTTCCTCTCAAATTTCTCTCAAATCCATATTTAATT
Found at i:14424458 original size:7 final size:7
Alignment explanation
Indices: 14424446--14424471 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
14424436 TAGTCGATTG
14424446 GTATTTA
1 GTATTTA
14424453 GTATTTA
1 GTATTTA
14424460 GTATTTA
1 GTATTTA
14424467 GTATT
1 GTATT
14424472 ATGTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:14425809 original size:42 final size:43
Alignment explanation
Indices: 14425725--14425935 Score: 338
Period size: 42 Copynumber: 4.9 Consensus size: 43
14425715 AACCCTATCT
14425725 CTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCCTAAACC
1 CTTAACTTAAAAACCCT-AACCCTTAACTTAAAAACCCTAAACC
*
14425769 CTTAACTTAAAAACCCTAA-CCTTAACTTAAAAACCATAAACC
1 CTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACC
*
14425811 CTTAACTTAAAAACCTTAAACCCTTAACTT-AAAACCCTAAACC
1 CTTAACTTAAAAACCCT-AACCCTTAACTTAAAAACCCTAAACC
* *
14425854 CTTAACTTAAAAACCCTAACCTTTAACTT-AAAATCCTAAACC
1 CTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACC
*
14425896 CTTAACTTAAAAACCCTAACCCTTAACTTAACAACCCTAA
1 CTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAA
14425936 CCGTAACCCT
Statistics
Matches: 155, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
42 89 0.57
43 40 0.26
44 26 0.17
ACGTcount: A:0.45, C:0.30, G:0.00, T:0.25
Consensus pattern (43 bp):
CTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACC
Found at i:14425937 original size:21 final size:22
Alignment explanation
Indices: 14425725--14425935 Score: 335
Period size: 22 Copynumber: 9.9 Consensus size: 22
14425715 AACCCTATCT
14425725 CTTAACTTAAAAACCCTAAACC
1 CTTAACTTAAAAACCCTAAACC
14425747 CTTAACTTAAAAACCCTAAACC
1 CTTAACTTAAAAACCCTAAACC
14425769 CTTAACTTAAAAACCCT-AA-C
1 CTTAACTTAAAAACCCTAAACC
*
14425789 CTTAACTTAAAAACCATAAACC
1 CTTAACTTAAAAACCCTAAACC
*
14425811 CTTAACTTAAAAACCTTAAACC
1 CTTAACTTAAAAACCCTAAACC
14425833 CTTAACTT-AAAACCCTAAACC
1 CTTAACTTAAAAACCCTAAACC
14425854 CTTAACTTAAAAACCCT-AACC
1 CTTAACTTAAAAACCCTAAACC
* *
14425875 TTTAACTT-AAAATCCTAAACC
1 CTTAACTTAAAAACCCTAAACC
14425896 CTTAACTTAAAAACCCT-AACC
1 CTTAACTTAAAAACCCTAAACC
*
14425917 CTTAACTTAACAACCCTAA
1 CTTAACTTAAAAACCCTAA
14425936 CCGTAACCCT
Statistics
Matches: 175, Mismatches: 8, Indels: 12
0.90 0.04 0.06
Matches are distributed among these distances:
20 24 0.14
21 66 0.38
22 85 0.49
ACGTcount: A:0.45, C:0.30, G:0.00, T:0.25
Consensus pattern (22 bp):
CTTAACTTAAAAACCCTAAACC
Found at i:14426142 original size:112 final size:112
Alignment explanation
Indices: 14426004--14426217 Score: 383
Period size: 112 Copynumber: 1.9 Consensus size: 112
14425994 AACCTAACCC
14426004 TAATATGATATAATTTGATAAATTTACTAACAATTAATACAATTAACAATTAATAATTTGACTAA
1 TAATATGATATAATTTGATAAATTTACTAACAATTAATACAATTAACAATTAATAATTTGACTAA
*
14426069 CAAAATGTTAGATTTTACAAAATGTTTTGACTGGTACTAACAATTAA
66 CAAAATGTTAGATTTTACAAAATATTTTGACTGGTACTAACAATTAA
* * * *
14426116 TAATTTGATATAATTTGGTAATTTTACTAACAATTAATACAATTAACAATTAATAATTTTACTAA
1 TAATATGATATAATTTGATAAATTTACTAACAATTAATACAATTAACAATTAATAATTTGACTAA
14426181 CAAAATGTTAGATTTTACAAAATATTTTGACTGGTAC
66 CAAAATGTTAGATTTTACAAAATATTTTGACTGGTAC
14426218 AAAAAAATAT
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
112 97 1.00
ACGTcount: A:0.44, C:0.09, G:0.08, T:0.39
Consensus pattern (112 bp):
TAATATGATATAATTTGATAAATTTACTAACAATTAATACAATTAACAATTAATAATTTGACTAA
CAAAATGTTAGATTTTACAAAATATTTTGACTGGTACTAACAATTAA
Found at i:14429446 original size:125 final size:125
Alignment explanation
Indices: 14429218--14429523 Score: 477
Period size: 125 Copynumber: 2.4 Consensus size: 125
14429208 CCCAAATATG
* * * * *
14429218 CTACTGTAGCAAAAGCGCGTCCACGAGGGCACGATTTCATAAATTCTTCTGATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCAGAAATTTTTTTGATAAAGCATCCTGC
* *
14429283 TTGAAGCGTTTTTTATACTATTTTCTCAGAAACGTCAACTCGAAATTATTTTTTTAGGAC
66 TTGAAGCGTTTTTTATACTATTTACTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
* * * * *
14429343 TTACTATAGCAAAAGCGCGTCCATGTGAGCGCGATTTCAGAAATTTTTTTGATAAAGTATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCAGAAATTTTTTTGATAAAGCATCCTGC
*
14429408 TTGAAGTGTTTTTTATACTATTTACTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
66 TTGAAGCGTTTTTTATACTATTTACTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
* *
14429468 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCAGAATTTTTTTTGTTAAA
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCAGAAATTTTTTTGATAAA
14429524 AACCTTAAAC
Statistics
Matches: 162, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
125 162 1.00
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCAGAAATTTTTTTGATAAAGCATCCTGC
TTGAAGCGTTTTTTATACTATTTACTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
Found at i:14429669 original size:40 final size:40
Alignment explanation
Indices: 14429592--14429669 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
14429582 TAGGGGCGCG
* *
14429592 CTACGTGGCAACAAAACGCGTCCACGTCAGCGTGCTTTAC
1 CTACGTGGCAACAAAACGCGTCCACGTAAGCGCGCTTTAC
* * **
14429632 CTACGTTGCAACAAATCGCGTCCTTGTAAGCGCGCTTT
1 CTACGTGGCAACAAAACGCGTCCACGTAAGCGCGCTTT
14429670 GTGTCCATGT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (40 bp):
CTACGTGGCAACAAAACGCGTCCACGTAAGCGCGCTTTAC
Found at i:14435084 original size:12 final size:12
Alignment explanation
Indices: 14435067--14435092 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14435057 CATATCAATC
14435067 TTTTTAACAGTG
1 TTTTTAACAGTG
14435079 TTTTTAACAGTG
1 TTTTTAACAGTG
14435091 TT
1 TT
14435093 AGTCAGATAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.08, G:0.15, T:0.54
Consensus pattern (12 bp):
TTTTTAACAGTG
Found at i:14440264 original size:26 final size:26
Alignment explanation
Indices: 14440212--14440265 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
14440202 CCCCCACCTA
*
14440212 TTTTTTTTCACACAATTTCCTTGAAT
1 TTTTTTTTCACACAATTTCCTTAAAT
14440238 TTTTTTTTC-CA-AATTTCTCTCTAAAT
1 TTTTTTTTCACACAATTTC-CT-TAAAT
14440264 TT
1 TT
14440266 CTCAAAGCTC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 6 0.24
25 4 0.16
26 15 0.60
ACGTcount: A:0.22, C:0.19, G:0.02, T:0.57
Consensus pattern (26 bp):
TTTTTTTTCACACAATTTCCTTAAAT
Found at i:14442053 original size:18 final size:18
Alignment explanation
Indices: 14442030--14442072 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
14442020 TGCCAGGTGC
*
14442030 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTTATAT
14442048 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
14442066 GTTTCCT
1 GTATCCT
14442073 TTTCCTAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.21, C:0.28, G:0.09, T:0.42
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:14443455 original size:14 final size:14
Alignment explanation
Indices: 14443436--14443472 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
14443426 TATTAGTGGC
14443436 AATTAAATATTACA
1 AATTAAATATTACA
14443450 AATTAAATATTACA
1 AATTAAATATTACA
*
14443464 AATGAAATA
1 AATTAAATA
14443473 ATATTAGTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.32
Consensus pattern (14 bp):
AATTAAATATTACA
Found at i:14445118 original size:50 final size:50
Alignment explanation
Indices: 14445045--14445187 Score: 178
Period size: 50 Copynumber: 2.8 Consensus size: 50
14445035 ATTTGGGTAA
*
14445045 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAGG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAGG
** * * * * *
14445095 AGAGGTCCCCCGTAAGACTATGTCTGGGACATGACATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAGG
** *
14445145 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
14445188 TGTTATTATC
Statistics
Matches: 76, Mismatches: 16, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
50 44 0.58
51 32 0.42
ACGTcount: A:0.26, C:0.23, G:0.31, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAGG
Found at i:14446709 original size:25 final size:25
Alignment explanation
Indices: 14446622--14446711 Score: 121
Period size: 25 Copynumber: 3.6 Consensus size: 25
14446612 ACCAACACCC
14446622 AACTTCTTCAATTT-ATATTCTTCTG
1 AACTTCTTCAATTTCA-ATTCTTCTG
*
14446647 AACTTCTTCAATTTCTATTCTTCTG
1 AACTTCTTCAATTTCAATTCTTCTG
*
14446672 AACTTCTTCAATTTCAATTCTTATG
1 AACTTCTTCAATTTCAATTCTTCTG
*
14446697 AAATTCTAT-AATTTC
1 AACTTCT-TCAATTTC
14446712 TCTTGCTATA
Statistics
Matches: 59, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
25 58 0.98
26 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.03, T:0.50
Consensus pattern (25 bp):
AACTTCTTCAATTTCAATTCTTCTG
Found at i:14447090 original size:126 final size:126
Alignment explanation
Indices: 14446780--14447460 Score: 963
Period size: 126 Copynumber: 5.4 Consensus size: 126
14446770 AAGCAGGATG
* * * **
14446780 TACTGTAGAAAAAGAGCATCCAGGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCTTAT
1 TACTGTAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGC
* * *
14446845 TTGAAGTGTTTTTGACACTATTTTTTCAAAACCATCTTCTCAAAATCATTTTTT-AGAAAC
66 TTGAAGCGTTTTTGACACTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTTCAGAAAC
* *
14446905 TACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGC
1 TACTGTAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGC
* *
14446970 TTGAAGTGTTTTTGACATTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTTCAGAAAC
66 TTGAAGCGTTTTTGACACTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTTCAGAAAC
* * *
14447031 TACTGTAGAAAAAGAGCGTCAATGTGAGAGCTTTTTTCAGTACTTTTGCTGACTGTGCATCCTGC
1 TACTGTAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGC
* *
14447096 TTGAAGCATTTTTGACACTATTTTTTCAGAACCATCTTCTCAAAGTTATTTTTTCAGAAAC
66 TTGAAGCGTTTTTGACACTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTTCAGAAAC
* ** *
14447157 TACTATAGAAAAAGAGCGTTAAGGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGC
1 TACTGTAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGC
* *
14447222 TTGAAGAGTTTTTGACACTATTTTTTCAGAATCATCTTCTCAAAATTATTTTTTCAGAAAC
66 TTGAAGCGTTTTTGACACTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTTCAGAAAC
* * * * * * * * * *
14447283 TACTATAGAAAAATGA-AGTCTATATGGGTGTTTTTTTTAGTACTTTTGCTAAAAGTGCATTCTG
1 TACTGTAGAAAAA-GAGCGTCCATGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTG
* * * * *
14447347 TTTGAAGCGATTTTAAGACTATTTTTTCAGAACCATCTTCTCAAAATTA-TTTTTCAAAAAC
65 CTTGAAGCGTTTTTGACACTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTTCAGAAAC
* * *
14447408 TACTGTAGAAAAAAAGAGTCCATGTGGGAGCTTTTTTCACTACTTTTGCTGAC
1 TACTGTAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTCAGTACTTTTGCTGAC
14447461 TAAACAAAAA
Statistics
Matches: 500, Mismatches: 53, Indels: 6
0.89 0.09 0.01
Matches are distributed among these distances:
124 1 0.00
125 164 0.33
126 333 0.67
127 2 0.00
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.38
Consensus pattern (126 bp):
TACTGTAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGC
TTGAAGCGTTTTTGACACTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTTCAGAAAC
Found at i:14447612 original size:28 final size:28
Alignment explanation
Indices: 14447546--14447678 Score: 117
Period size: 28 Copynumber: 4.6 Consensus size: 28
14447536 TAAAAACCCT
* * *
14447546 AAAACCTTAAACACAAATTTA-TTTTTA
1 AAAACCATAAACCCTAATTTATTTTTTA
*
14447573 AAAATCCCTAAACCCTAATTTATTTTTTA
1 AAAA-CCATAAACCCTAATTTATTTTTTA
* * *
14447602 TAAACAATAAATCCTAATTTAATTTATTTTTTA
1 AAAACCATAAA-CC----CTAATTTATTTTTTA
*
14447635 AAAACCATAAACCATAATTTA-TTTTTA
1 AAAACCATAAACCCTAATTTATTTTTTA
*
14447662 AAAACCCTAAACCCTAA
1 AAAACCATAAACCCTAA
14447679 ACATATAAAA
Statistics
Matches: 87, Mismatches: 12, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
27 25 0.29
28 26 0.30
29 11 0.13
32 2 0.02
33 23 0.26
ACGTcount: A:0.45, C:0.17, G:0.00, T:0.38
Consensus pattern (28 bp):
AAAACCATAAACCCTAATTTATTTTTTA
Found at i:14447630 original size:33 final size:33
Alignment explanation
Indices: 14447588--14447655 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
14447578 CCCTAAACCC
*
14447588 TAATTTATTTTTTATAAACAATAAATCC-TAATT
1 TAATTTATTTTTTAAAAACAATAAA-CCATAATT
*
14447621 TAATTTATTTTTTAAAAACCATAAACCATAATT
1 TAATTTATTTTTTAAAAACAATAAACCATAATT
14447654 TA
1 TA
14447656 TTTTTAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
32 2 0.06
33 30 0.94
ACGTcount: A:0.44, C:0.10, G:0.00, T:0.46
Consensus pattern (33 bp):
TAATTTATTTTTTAAAAACAATAAACCATAATT
Found at i:14455100 original size:27 final size:29
Alignment explanation
Indices: 14455047--14455105 Score: 77
Period size: 30 Copynumber: 2.1 Consensus size: 29
14455037 GAACATTGTA
*
14455047 TTAGAACCCATATCTTCAAAATTATTATTT
1 TTAGAACCCATATCGTCAAAA-TATTATTT
*
14455077 TTAGAACCCATCTCGTC-AAA-ATTATTT
1 TTAGAACCCATATCGTCAAAATATTATTT
14455104 TT
1 TT
14455106 CATAACCCCT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 9 0.33
29 3 0.11
30 15 0.56
ACGTcount: A:0.34, C:0.19, G:0.05, T:0.42
Consensus pattern (29 bp):
TTAGAACCCATATCGTCAAAATATTATTT
Found at i:14455264 original size:22 final size:21
Alignment explanation
Indices: 14455236--14455309 Score: 73
Period size: 22 Copynumber: 3.5 Consensus size: 21
14455226 TAGAATACTA
14455236 AAACCCTAATTTTATAAACCTT
1 AAACCCTAATTTTATAAACC-T
*
14455258 AAGCCCTAA--TTA-AAACACT
1 AAACCCTAATTTTATAAAC-CT
*
14455277 AAACCCTAATTTAATAAACCCT
1 AAACCCTAATTTTATAAA-CCT
*
14455299 AAACCATAATT
1 AAACCCTAATT
14455310 AAATAATTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
19 13 0.30
20 4 0.09
21 2 0.05
22 23 0.53
23 1 0.02
ACGTcount: A:0.46, C:0.24, G:0.01, T:0.28
Consensus pattern (21 bp):
AAACCCTAATTTTATAAACCT
Found at i:14455314 original size:22 final size:22
Alignment explanation
Indices: 14455270--14455315 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
14455260 GCCCTAATTA
* *
14455270 AAACACTAAACCCTAATTTAAT
1 AAACACTAAACCATAATTAAAT
*
14455292 AAACCCTAAACCATAATTAAAT
1 AAACACTAAACCATAATTAAAT
14455314 AA
1 AA
14455316 TTTAAACCCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.54, C:0.22, G:0.00, T:0.24
Consensus pattern (22 bp):
AAACACTAAACCATAATTAAAT
Found at i:14455802 original size:23 final size:23
Alignment explanation
Indices: 14455750--14455804 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
14455740 TATGCTTCCT
14455750 TTAATTAATATTTTATTAAATTGA
1 TTAATTAATATTTTATT-AATTGA
* *
14455774 AT-ATTAATAGTTTTATT-GTTGA
1 TTAATTAATA-TTTTATTAATTGA
14455796 TTAATTAAT
1 TTAATTAAT
14455805 TTGTTAAACT
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 5 0.19
23 13 0.50
24 8 0.31
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (23 bp):
TTAATTAATATTTTATTAATTGA
Found at i:14456310 original size:39 final size:38
Alignment explanation
Indices: 14456233--14456311 Score: 88
Period size: 39 Copynumber: 2.1 Consensus size: 38
14456223 TACAACGAAA
*** *
14456233 AAATAATTAACATTTTATTGTAATAAAATTTTAGAATT
1 AAATAATTAACATTTTATTGTAATAAAAGAATACAATT
*
14456271 AAATAATTAAC-TTTATAATTTTAATAAAAGAATACAATT
1 AAATAATTAACATTT-T-ATTGTAATAAAAGAATACAATT
14456310 AA
1 AA
14456312 GCATTTGATT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
37 3 0.09
38 12 0.35
39 19 0.56
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.41
Consensus pattern (38 bp):
AAATAATTAACATTTTATTGTAATAAAAGAATACAATT
Found at i:14463240 original size:16 final size:15
Alignment explanation
Indices: 14463219--14463250 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
14463209 CAAAATCTAT
14463219 AAAACAATGACAAATA
1 AAAACAAT-ACAAATA
14463235 AAAACAATACAAATA
1 AAAACAATACAAATA
14463250 A
1 A
14463251 GCTAACTTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.72, C:0.12, G:0.03, T:0.12
Consensus pattern (15 bp):
AAAACAATACAAATA
Found at i:14463666 original size:41 final size:41
Alignment explanation
Indices: 14463591--14463785 Score: 221
Period size: 41 Copynumber: 4.8 Consensus size: 41
14463581 GATACCATAT
* * * * ** *
14463591 CGGCATAAAGCCTACTAGACACAAATCCAAATATGATACAT
1 CGGCATAAAGCCTGCTAGGCATAAAGCCTGATATGATACAC
* *
14463632 CGGCACAAAGCCTGCTAGGCATAAAGCCTGATATGGTACAC
1 CGGCATAAAGCCTGCTAGGCATAAAGCCTGATATGATACAC
* * *
14463673 CGGCATGAAGCGTGCTAGGCATAAAGCCTGATATTATTA-AC
1 CGGCATAAAGCCTGCTAGGCATAAAGCCTGATATGA-TACAC
* * * *
14463714 CGGCATAAAGCCTGCTAGACATAAAGCCTGTTATAATTCAC
1 CGGCATAAAGCCTGCTAGGCATAAAGCCTGATATGATACAC
*
14463755 CGACATAAAGCCTGCTAGGCATAAAGCCTGA
1 CGGCATAAAGCCTGCTAGGCATAAAGCCTGA
14463786 ATATTATTAA
Statistics
Matches: 129, Mismatches: 23, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
40 1 0.01
41 126 0.98
42 2 0.02
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.21
Consensus pattern (41 bp):
CGGCATAAAGCCTGCTAGGCATAAAGCCTGATATGATACAC
Found at i:14464244 original size:28 final size:26
Alignment explanation
Indices: 14464213--14464264 Score: 77
Period size: 28 Copynumber: 1.9 Consensus size: 26
14464203 TTTTTAATGT
14464213 TTATTATAACATAATAATATATTATACC
1 TTATTATAACAT--TAATATATTATACC
*
14464241 TTATTATAACATTTATATATTATA
1 TTATTATAACATTAATATATTATA
14464265 TTAATAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 11 0.48
28 12 0.52
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (26 bp):
TTATTATAACATTAATATATTATACC
Found at i:14465465 original size:12 final size:12
Alignment explanation
Indices: 14465448--14465472 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14465438 GGTGTTCATT
14465448 CGGTTAACCGAC
1 CGGTTAACCGAC
14465460 CGGTTAACCGAC
1 CGGTTAACCGAC
14465472 C
1 C
14465473 CGAAATTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:14465645 original size:9 final size:9
Alignment explanation
Indices: 14465631--14465705 Score: 80
Period size: 9 Copynumber: 8.2 Consensus size: 9
14465621 TTTTGGTTAA
14465631 AATTACCCG
1 AATTACCCG
14465640 AATTACCCG
1 AATTACCCG
*
14465649 AATTAACCG
1 AATTACCCG
*
14465658 AATTAACCG
1 AATTACCCG
**
14465667 AATTAATCG
1 AATTACCCG
14465676 AATTA-CCG
1 AATTACCCG
*
14465684 AAAAATACCCG
1 --AATTACCCG
14465695 AATTACCCG
1 AATTACCCG
14465704 AA
1 AA
14465706 ATTTTTTTAT
Statistics
Matches: 58, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
8 2 0.03
9 49 0.84
10 4 0.07
11 3 0.05
ACGTcount: A:0.43, C:0.25, G:0.11, T:0.21
Consensus pattern (9 bp):
AATTACCCG
Found at i:14465662 original size:27 final size:27
Alignment explanation
Indices: 14465630--14465705 Score: 91
Period size: 27 Copynumber: 2.8 Consensus size: 27
14465620 TTTTTGGTTA
14465630 AAATTACCCGAATTACCCGAATTAACCG
1 AAATTACCCGAATTACCCGAATT-ACCG
* **
14465658 -AATTAACCGAATTAATCGAATTACCG
1 AAATTACCCGAATTACCCGAATTACCG
*
14465684 AAAAATACCCGAATTACCCGAA
1 -AAATTACCCGAATTACCCGAA
14465706 ATTTTTTTAT
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
26 4 0.10
27 19 0.49
28 16 0.41
ACGTcount: A:0.43, C:0.25, G:0.11, T:0.21
Consensus pattern (27 bp):
AAATTACCCGAATTACCCGAATTACCG
Found at i:14465826 original size:40 final size:39
Alignment explanation
Indices: 14465781--14465869 Score: 124
Period size: 39 Copynumber: 2.3 Consensus size: 39
14465771 GACTTTAGTA
*
14465781 AATTGGGTTGTCTTTTAGTTTTAGTTTTATTGGATTGGAT
1 AATTGGGTTGAC-TTTAGTTTTAGTTTTATTGGATTGGAT
** * *
14465821 AATTGGGTAAACTTTAGTTTTAGTTTTATTGGGTTGGGT
1 AATTGGGTTGACTTTAGTTTTAGTTTTATTGGATTGGAT
14465860 AATTGGGTTG
1 AATTGGGTTG
14465870 GGTAATTGAG
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
39 33 0.79
40 9 0.21
ACGTcount: A:0.19, C:0.02, G:0.28, T:0.51
Consensus pattern (39 bp):
AATTGGGTTGACTTTAGTTTTAGTTTTATTGGATTGGAT
Found at i:14465866 original size:13 final size:13
Alignment explanation
Indices: 14465848--14465877 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
14465838 TTTTAGTTTT
14465848 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
14465861 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
14465874 ATTG
1 ATTG
14465878 AGTTTGGGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.17, C:0.00, G:0.43, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:14477337 original size:67 final size:67
Alignment explanation
Indices: 14477229--14477884 Score: 631
Period size: 67 Copynumber: 9.8 Consensus size: 67
14477219 ATGGGCTATA
** * *
14477229 ATGGGGTATAATGTGTAAGATTATAGCTCGACTATGGCAACATAGAGACTCCGCCAAGACATTAA
1 ATGGGGTATAATGTGTAAGACCATAGCTCGACTATGACAACATAGAGAGTCCGCCAAGACATTAA
14477294 AC
66 AC
* *
14477296 ATGGGTTATAATGTGTAAGACCATAGCTCGACTATGACAACATAGAGAGTCCGCCAGGACATTAA
1 ATGGGGTATAATGTGTAAGACCATAGCTCGACTATGACAACATAGAGAGTCCGCCAAGACATTAA
14477361 AC
66 AC
* * **
14477363 ATGGGGTATAATGTGTAAGACCATAGCTCAACTATGGA-AACATAAAGAGTCTACCAAGACATTA
1 ATGGGGTATAATGTGTAAGACCATAGCTCGACTAT-GACAACATAGAGAGTCCGCCAAGACATTA
14477427 AAC
65 AAC
* * * ** * *
14477430 ATGGGGCATAATGTGTAAGACCATAGCTTGACTATGGCAACATAGAGAGTTTGCCAAAAAATTAA
1 ATGGGGTATAATGTGTAAGACCATAGCTCGACTATGACAACATAGAGAGTCCGCCAAGACATTAA
14477495 AC
66 AC
* * * * * *** * *
14477497 ATGGGATATAATGTGTAAAACCATAGCTCAACAATTG-CAATATAGAGAGTTTTCCAGGATATTA
1 ATGGGGTATAATGTGTAAGACCATAGCTCGACTA-TGACAACATAGAGAGTCCGCCAAGACATTA
*
14477561 AAT
65 AAC
* * * * * * *
14477564 ATGGGGTATAATCTGTGACACCATAGCTTGACTATGACAACATAGAAAGTTCTCCAAGACATTAA
1 ATGGGGTATAATGTGTAAGACCATAGCTCGACTATGACAACATAGAGAGTCCGCCAAGACATTAA
14477629 AC
66 AC
* * * ** * * *
14477631 ATAGGGTATAATGTGTAAAACCATATCTCGACTATGGTAACATAGAGAGTCTGTCAGGACATTAA
1 ATGGGGTATAATGTGTAAGACCATAGCTCGACTATGACAACATAGAGAGTCCGCCAAGACATTAA
14477696 AC
66 AC
** ** * *
14477698 ATAAGGTATAATGTGTAAGGTCATAGCTCGACTATGGA-AA-ATAAAGAGTTCGCCAAGACATTA
1 ATGGGGTATAATGTGTAAGACCATAGCTCGACTAT-GACAACATAGAGAGTCCGCCAAGACATTA
14477761 AAC
65 AAC
* * * * * * * *
14477764 ATGAGATATAATGCGTAAGACCATAGCT-TAGCTATGGA-AACATAAAGGGTCTGTCAAGACATT
1 ATGGGGTATAATGTGTAAGACCATAGCTCGA-CTAT-GACAACATAGAGAGTCCGCCAAGACATT
14477827 AAAC
64 AAAC
* * * * * * * * *
14477831 ATGGGGTATGACGTGTAAGACTAAAGCTCGGCTATGGCAGCATACAGACTCCGC
1 ATGGGGTATAATGTGTAAGACCATAGCTCGACTATGACAACATAGAGAGTCCGC
14477885 GGGGATAAGA
Statistics
Matches: 483, Mismatches: 97, Indels: 18
0.81 0.16 0.03
Matches are distributed among these distances:
65 1 0.00
66 57 0.12
67 420 0.87
68 5 0.01
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.24
Consensus pattern (67 bp):
ATGGGGTATAATGTGTAAGACCATAGCTCGACTATGACAACATAGAGAGTCCGCCAAGACATTAA
AC
Found at i:14477471 original size:134 final size:134
Alignment explanation
Indices: 14477229--14477874 Score: 727
Period size: 134 Copynumber: 4.8 Consensus size: 134
14477219 ATGGGCTATA
** * * * *
14477229 ATGGGGTATAATGTGTAAGATTATAGCTCGACTATGGCAACATAGAGACTCCGCCAAGACATTAA
1 ATGGGGTATAATGTGTAAGACCATAGCTCAACTATGGAAACATAGAGAGTCTGCCAAGACATTAA
* * * *
14477294 ACATGGGTTATAATGTGTAAGACCATAGCTCGACTATGACAACATAGAGAGTCCGCCAGGACATT
66 ACATGGGGTATAATGTGTAAGACCATAGCTCGACTATGGCAACATAGAGAGTTCGCCAAGACATT
14477359 AAAC
131 AAAC
* *
14477363 ATGGGGTATAATGTGTAAGACCATAGCTCAACTATGGAAACATAAAGAGTCTACCAAGACATTAA
1 ATGGGGTATAATGTGTAAGACCATAGCTCAACTATGGAAACATAGAGAGTCTGCCAAGACATTAA
* * * * *
14477428 ACATGGGGCATAATGTGTAAGACCATAGCTTGACTATGGCAACATAGAGAGTTTGCCAAAAAATT
66 ACATGGGGTATAATGTGTAAGACCATAGCTCGACTATGGCAACATAGAGAGTTCGCCAAGACATT
14477493 AAAC
131 AAAC
* * * * * * * * * *
14477497 ATGGGATATAATGTGTAAAACCATAGCTCAACAATTGCAATATAGAGAGTTTTCCAGGATATTAA
1 ATGGGGTATAATGTGTAAGACCATAGCTCAACTATGGAAACATAGAGAGTCTGCCAAGACATTAA
* * * * * * * *
14477562 ATATGGGGTATAATCTGTGACACCATAGCTTGACTATGACAACATAGAAAGTTCTCCAAGACATT
66 ACATGGGGTATAATGTGTAAGACCATAGCTCGACTATGGCAACATAGAGAGTTCGCCAAGACATT
14477627 AAAC
131 AAAC
* * * * * * *
14477631 ATAGGGTATAATGTGTAAAACCATATCTCGACTATGGTAACATAGAGAGTCTGTCAGGACATTAA
1 ATGGGGTATAATGTGTAAGACCATAGCTCAACTATGGAAACATAGAGAGTCTGCCAAGACATTAA
** ** * *
14477696 ACATAAGGTATAATGTGTAAGGTCATAGCTCGACTATGG-AAAATAAAGAGTTCGCCAAGACATT
66 ACATGGGGTATAATGTGTAAGACCATAGCTCGACTATGGCAACATAGAGAGTTCGCCAAGACATT
14477760 AAAC
131 AAAC
* * * * * * * *
14477764 ATGAGATATAATGCGTAAGACCATAGCTTAGCTATGGAAACATAAAGGGTCTGTCAAGACATTAA
1 ATGGGGTATAATGTGTAAGACCATAGCTCAACTATGGAAACATAGAGAGTCTGCCAAGACATTAA
* * * * * *
14477829 ACATGGGGTATGACGTGTAAGACTAAAGCTCGGCTATGGCAGCATA
66 ACATGGGGTATAATGTGTAAGACCATAGCTCGACTATGGCAACATA
14477875 CAGACTCCGC
Statistics
Matches: 422, Mismatches: 89, Indels: 2
0.82 0.17 0.00
Matches are distributed among these distances:
133 107 0.25
134 315 0.75
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (134 bp):
ATGGGGTATAATGTGTAAGACCATAGCTCAACTATGGAAACATAGAGAGTCTGCCAAGACATTAA
ACATGGGGTATAATGTGTAAGACCATAGCTCGACTATGGCAACATAGAGAGTTCGCCAAGACATT
AAAC
Found at i:14477589 original size:201 final size:198
Alignment explanation
Indices: 14477229--14477874 Score: 749
Period size: 201 Copynumber: 3.2 Consensus size: 198
14477219 ATGGGCTATA
** * *
14477229 ATGGGGTATAATGTGTAAGATTATAGCTCGACTATGGCAACATAGAGACTCCGCCAAGACATTAA
1 ATGGGGTATAATGTGTAAGACCATAGCTCGACTATGGCAACATAGAGAGTCTGCCAAGACATTAA
* *
14477294 ACATGGGTTATAATGTGTAAGACCATAGCTCGACTATGACAACATAGAGAGTCCGCCAGGACATT
66 ACATGGG-TATAATGTGTAAGACCATAGCTCGACTATG-CAAAATAGAGAGTTCGCCAGGACATT
* *
14477359 AAACATGGGGTATAATGTGTAAGACCATAGCTCAACTATGGAAACATAAAGAGTCTACCAAGACA
129 AAACATGGGGTATAATCTGTAAGACCATAGCTTAACTATGGAAACATAAAGAGTCT-CCAAGACA
14477424 TTAAAC
193 TTAAAC
* * * * *
14477430 ATGGGGCATAATGTGTAAGACCATAGCTTGACTATGGCAACATAGAGAGTTTGCCAAAAAATTAA
1 ATGGGGTATAATGTGTAAGACCATAGCTCGACTATGGCAACATAGAGAGTCTGCCAAGACATTAA
* * * * ** *
14477495 ACATGGGATATAATGTGTAAAACCATAGCTCAACAATTGCAATATAGAGAGTTTTCCAGGATATT
66 ACATGGG-TATAATGTGTAAGACCATAGCTCGACTA-TGCAAAATAGAGAGTTCGCCAGGACATT
* * * *
14477560 AAATATGGGGTATAATCTGTGACACCATAGCTTGACTAT-GACAACATAGAA-AGTTCTCCAAGA
129 AAACATGGGGTATAATCTGTAAGACCATAGCTTAACTATGGA-AACATA-AAGAG-TCTCCAAGA
14477623 CATTAAAC
191 CATTAAAC
* * * * * *
14477631 ATAGGGTATAATGTGTAAAACCATATCTCGACTATGGTAACATAGAGAGTCTGTCAGGACATTAA
1 ATGGGGTATAATGTGTAAGACCATAGCTCGACTATGGCAACATAGAGAGTCTGCCAAGACATTAA
* ** * * *
14477696 ACATAAGGTATAATGTGTAAGGTCATAGCTCGACTATGGAAAATAAAGAGTTCGCCAAGACATTA
66 ACAT-GGGTATAATGTGTAAGACCATAGCTCGACTATGCAAAATAGAGAGTTCGCCAGGACATTA
* * * * *
14477761 AACATGAGATATAATGC-GTAAGACCATAGCTTAGCTATGGAAACATAAAGGGTCTGTCAAGACA
130 AACATGGGGTATAAT-CTGTAAGACCATAGCTTAACTATGGAAACATAAAGAGTCT-CCAAGACA
14477825 TTAAAC
193 TTAAAC
* * * * * *
14477831 ATGGGGTATGACGTGTAAGACTAAAGCTCGGCTATGGCAGCATA
1 ATGGGGTATAATGTGTAAGACCATAGCTCGACTATGGCAACATA
14477875 CAGACTCCGC
Statistics
Matches: 369, Mismatches: 67, Indels: 19
0.81 0.15 0.04
Matches are distributed among these distances:
199 5 0.01
200 107 0.29
201 248 0.67
202 9 0.02
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (198 bp):
ATGGGGTATAATGTGTAAGACCATAGCTCGACTATGGCAACATAGAGAGTCTGCCAAGACATTAA
ACATGGGTATAATGTGTAAGACCATAGCTCGACTATGCAAAATAGAGAGTTCGCCAGGACATTAA
ACATGGGGTATAATCTGTAAGACCATAGCTTAACTATGGAAACATAAAGAGTCTCCAAGACATTA
AAC
Found at i:14491357 original size:67 final size:67
Alignment explanation
Indices: 14491249--14491564 Score: 269
Period size: 67 Copynumber: 4.7 Consensus size: 67
14491239 ATGGGTTATA
* **** *
14491249 ATGGGGTATAATGTGTAAGACCATAGCTTGGTTATGGCAACATAGAGAGTTTTCT-AGAACATTA
1 ATGGGGTATAATGTGTAAGACCACAGCTCAACTATGGCAACATAGAGAGTTTGCTAAG-ACATTA
14491313 AAC
65 AAC
* * *
14491316 ATGGGGTTTAATGTGTAAGACCACATCTCAACTATGGCAACATAGAGAGTTTGCTAAGGCATTAA
1 ATGGGGTATAATGTGTAAGACCACAGCTCAACTATGGCAACATAGAGAGTTTGCTAAGACATTAA
14491381 AC
66 AC
**** ** * **
14491383 ATGGGGTATAATGTGTAAGA-TTGTGCTCGGCTATGGCAACATAGAGAGTCTG-TCGGGACATTA
1 ATGGGGTATAATGTGTAAGACCACAGCTCAACTATGGCAACATAGAGAGTTTGCT-AAGACATTA
14491446 AAC
65 AAC
* * * * * * * * *** * *
14491449 ATGAGGTATAATATGTAAGATCATAGCTCAGCTATGGAAACATAAATAGTCCACCAAGATATTAA
1 ATGGGGTATAATGTGTAAGACCACAGCTCAACTATGGCAACATAGAGAGTTTGCTAAGACATTAA
*
14491514 GC
66 AC
* * * *
14491516 ATGGGGTATAATGTGTAAGACCATAGCTCCAGTATGACAACATAGAGAG
1 ATGGGGTATAATGTGTAAGACCACAGCTCAACTATGGCAACATAGAGAG
14491565 CGAAACAATC
Statistics
Matches: 197, Mismatches: 48, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
65 1 0.01
66 51 0.26
67 143 0.73
68 2 0.01
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (67 bp):
ATGGGGTATAATGTGTAAGACCACAGCTCAACTATGGCAACATAGAGAGTTTGCTAAGACATTAA
AC
Found at i:14491491 original size:133 final size:134
Alignment explanation
Indices: 14491249--14491564 Score: 350
Period size: 133 Copynumber: 2.4 Consensus size: 134
14491239 ATGGGTTATA
* * *
14491249 ATGGGGTATAATGTGTAAGACCATAGCTTGGTTATGGCAACATAGAGAGTTTTCTAGAACATTAA
1 ATGGGGTATAATGTGTAAGACCATAGCTCGGCTATGGCAACATAGAGAGTTGTCTAGAACATTAA
* * * * * * *** * *
14491314 ACATGGGGTTTAATGTGTAAGACCACATCTCAACTATGGCAACATAGAGAGTTTGCTAAGGCATT
66 ACATGAGGTATAATATGTAAGACCACAGCTCAACTATGGAAACATAAAGAGTCCACCAAGACATT
14491379 AAAC
131 AAAC
*** * *
14491383 ATGGGGTATAATGTGTAAGATTGT-GCTCGGCTATGGCAACATAGAGAGTCTGTC-GGGACATTA
1 ATGGGGTATAATGTGTAAGACCATAGCTCGGCTATGGCAACATAGAGAGT-TGTCTAGAACATTA
* * * * *
14491446 AACATGAGGTATAATATGTAAGATCATAGCTCAGCTATGGAAACATAAATAGTCCACCAAGATAT
65 AACATGAGGTATAATATGTAAGACCACAGCTCAACTATGGAAACATAAAGAGTCCACCAAGACAT
*
14491511 TAAGC
130 TAAAC
* *
14491516 ATGGGGTATAATGTGTAAGACCATAGCTCCAG-TATGACAACATAGAGAG
1 ATGGGGTATAATGTGTAAGACCATAGCT-CGGCTATGGCAACATAGAGAG
14491565 CGAAACAATC
Statistics
Matches: 149, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
133 104 0.70
134 43 0.29
135 2 0.01
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (134 bp):
ATGGGGTATAATGTGTAAGACCATAGCTCGGCTATGGCAACATAGAGAGTTGTCTAGAACATTAA
ACATGAGGTATAATATGTAAGACCACAGCTCAACTATGGAAACATAAAGAGTCCACCAAGACATT
AAAC
Found at i:14499460 original size:7 final size:7
Alignment explanation
Indices: 14499448--14499473 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
14499438 TTACTTTCAA
14499448 AAATCTC
1 AAATCTC
14499455 AAATCTC
1 AAATCTC
14499462 AAATCTC
1 AAATCTC
14499469 AAATC
1 AAATC
14499474 CTAATTTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.46, C:0.27, G:0.00, T:0.27
Consensus pattern (7 bp):
AAATCTC
Found at i:14508383 original size:21 final size:22
Alignment explanation
Indices: 14508351--14508396 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
14508341 CCCTATTCAC
* *
14508351 ATTTTCATTTAATTTTATTATT
1 ATTTTCATTTAATTTAATAATT
14508373 ATTTT-ATTTAATTTAATAATT
1 ATTTTCATTTAATTTAATAATT
14508394 ATT
1 ATT
14508397 AGTAGTAGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (22 bp):
ATTTTCATTTAATTTAATAATT
Found at i:14513564 original size:41 final size:41
Alignment explanation
Indices: 14513519--14513612 Score: 118
Period size: 41 Copynumber: 2.3 Consensus size: 41
14513509 TTCTAGTTGA
* *
14513519 AAGCGTTTTTTTGCAA-ATCACCTGAAAACACTTTTACTTGG
1 AAGCGTTTTTTTG-AATATCACCTGAAAACACTTTCAATTGG
* * * *
14513560 AAGCGTTTTTCTGAATTTCATCTGAAAACGCTTTCAATTGG
1 AAGCGTTTTTTTGAATATCACCTGAAAACACTTTCAATTGG
14513601 AAGCGTTTTTTT
1 AAGCGTTTTTTT
14513613 TAAATTGGCT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
40 2 0.04
41 43 0.96
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (41 bp):
AAGCGTTTTTTTGAATATCACCTGAAAACACTTTCAATTGG
Found at i:14519454 original size:43 final size:43
Alignment explanation
Indices: 14519401--14519563 Score: 167
Period size: 43 Copynumber: 3.8 Consensus size: 43
14519391 CTGGTAAGTG
*
14519401 TTTTCGTGTAAGACCACGTCTGGGACGTTGG-ATTCAACTTGTT
1 TTTTCGTGTAAGACCACGTCTGGGACGTTGGCA-TCAACTTGTA
* *
14519444 TTTTTGTGTAAGACCACGTCTGGGACGTTGGCATCGACTTGTA
1 TTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCAACTTGTA
* * *
14519487 TTTTCGTGTAAGACC-CTGTCTGGGACAG-TGACATCGATTTGTGA
1 TTTTCGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCAACTTGT-A
* *
14519531 -TTACATGTAA-ACCACGTCTGGGACAG-TGGCATC
1 TTTTCGTGTAAGACCACGTCTGGGAC-GTTGGCATC
14519564 GATTTGTGAT
Statistics
Matches: 106, Mismatches: 9, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
42 21 0.20
43 82 0.77
44 3 0.03
ACGTcount: A:0.21, C:0.20, G:0.26, T:0.33
Consensus pattern (43 bp):
TTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCAACTTGTA
Found at i:14519556 original size:42 final size:43
Alignment explanation
Indices: 14519450--14519597 Score: 178
Period size: 43 Copynumber: 3.5 Consensus size: 43
14519440 TGTTTTTTTG
* * *
14519450 TGTAAGACCACGTCTGGGAC-GTTGGCATCGACTTGT-ATTTTCG
1 TGTAAGACCACGTCTGGGACAG-TGGCATCGATTTGTGA-TTACA
*
14519493 TGTAAGACC-CTGTCTGGGACAGTGACATCGATTTGTGATTACA
1 TGTAAGACCAC-GTCTGGGACAGTGGCATCGATTTGTGATTACA
14519536 TGTAA-ACCACGTCTGGGACAGTGGCATCGATTTGTGATTACA
1 TGTAAGACCACGTCTGGGACAGTGGCATCGATTTGTGATTACA
* * *
14519578 TGTAAAATCACGTCTAGGAC
1 TGTAAGACCACGTCTGGGAC
14519598 GTTAACGTTG
Statistics
Matches: 93, Mismatches: 7, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
42 40 0.43
43 51 0.55
44 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.30
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACAGTGGCATCGATTTGTGATTACA
Found at i:14533748 original size:15 final size:15
Alignment explanation
Indices: 14533730--14533767 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
14533720 TTCCATTTTA
14533730 ATTATTATTAATA-AT
1 ATTATTA-TAATACAT
14533745 ATTATTATAATACAT
1 ATTATTATAATACAT
14533760 ATATATTA
1 AT-TATTA
14533768 AAACTATCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 5 0.24
15 11 0.52
16 5 0.24
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (15 bp):
ATTATTATAATACAT
Found at i:14546030 original size:134 final size:134
Alignment explanation
Indices: 14545803--14546261 Score: 410
Period size: 134 Copynumber: 3.4 Consensus size: 134
14545793 TAAATTGAAA
* * * * * * * * * *
14545803 AACTCTAATTGCATTGTGCATGATCGTAAATGAATAAACTTAAGCTATGATCGTAAACCAA-TGA
1 AACTCTAATTGAATCGTTCATGATCATAAATAAATGAACTTAAGCTGTGATTGTAAA-TAAGTAA
* ** * * *
14545867 GCTTTAATAATATGAGTTGTGATCGTAAATCACCAAACTGTTTGAATGGAGTTGTGATCATAAAT
65 ACTTTAATAATACCAATTGTCATCGTAAATCAACAAACTGTTTGAATGGAGTTGTGATCATAAAT
14545932 CGGTG
130 CGGTG
* * * * *
14545937 AACTCTAATTGAATCGTTCATTATCATAAATCAATGAACTTAAGTTTTGATTGTAAATTAG-AAA
1 AACTCTAATTGAATCGTTCATGATCATAAATAAATGAACTTAAGCTGTGATTGTAAATAAGTAAA
* ** * * * *
14546001 TCTTTAATAATACCAATTTTCATTTTAAATCATCAAACTGTTTGAATGGAGTTGCGGTCGTAAAT
66 -CTTTAATAATACCAATTGTCATCGTAAATCAACAAACTGTTTGAATGGAGTTGTGATCATAAAT
14546066 CAGG-G
130 C-GGTG
* * * *
14546071 AACTCGAAGTGAATCGTTCATGATCATAAATAAATGAACTTAAGCTGTGATCGTAAATAAGTGAA
1 AACTCTAATTGAATCGTTCATGATCATAAATAAATGAACTTAAGCTGTGATTGTAAATAAGTAAA
* * * * * *
14546136 CTTTAATAATATCGATTGTGATCGTAAATCAAAAAATTGTTTGAATAGA-TT-TGCATTCATAAA
66 CTTTAATAATACCAATTGTCATCGTAAATCAACAAACTGTTTGAATGGAGTTGTG-A-TCATAAA
* *
14546199 TTGAAT-
129 TCG-GTG
* * * *
14546205 AACGCTAATTGAATTC-TTCATGATCGTAAATTAATGAACTTAAGGTGTGATTGTAAA
1 AACTCTAATTGAA-TCGTTCATGATCATAAATAAATGAACTTAAGCTGTGATTGTAAA
14546262 CCAGCAAACT
Statistics
Matches: 260, Mismatches: 56, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
132 1 0.00
133 5 0.02
134 248 0.95
135 6 0.02
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.34
Consensus pattern (134 bp):
AACTCTAATTGAATCGTTCATGATCATAAATAAATGAACTTAAGCTGTGATTGTAAATAAGTAAA
CTTTAATAATACCAATTGTCATCGTAAATCAACAAACTGTTTGAATGGAGTTGTGATCATAAATC
GGTG
Found at i:14549060 original size:42 final size:43
Alignment explanation
Indices: 14549001--14549134 Score: 139
Period size: 42 Copynumber: 3.1 Consensus size: 43
14548991 ATGTTATCAA
* *
14549001 ATATCGATGACACTGTCCCAGACAGGGTCTTACACGAAAT-T-
1 ATATCGATGCCAATGTCCCAGACAGGGTCTTACACGAAATCTC
* *
14549042 ATATACGATGCCAATGTCCCAGACATGGTCTTACACATAAATCTC
1 ATAT-CGATGCCAATGTCCCAGACAGGGTCTTACAC-GAAATCTC
* ** * *
14549087 AAATCGATGCCAACATCCCAGAC-GAGGTTTTACACGAAATCAC
1 ATATCGATGCCAATGTCCCAGACAG-GGTCTTACACGAAATCTC
14549130 ATATC
1 ATATC
14549135 AGAATCCTAT
Statistics
Matches: 76, Mismatches: 12, Indels: 8
0.79 0.12 0.08
Matches are distributed among these distances:
41 4 0.05
42 28 0.37
43 14 0.18
44 27 0.36
45 3 0.04
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (43 bp):
ATATCGATGCCAATGTCCCAGACAGGGTCTTACACGAAATCTC
Found at i:14549108 original size:44 final size:42
Alignment explanation
Indices: 14549016--14549126 Score: 118
Period size: 44 Copynumber: 2.6 Consensus size: 42
14549006 GATGACACTG
* **
14549016 TCCCAGACAGGGTCTTACACGAAATTATATACGATGCCAATG
1 TCCCAGACAGGGTCTTACACGAAATTAAATACGATGCCAACA
* *
14549058 TCCCAGACATGGTCTTACACATAAATCTCAAAT-CGATGCCAACA
1 TCCCAGACAGGGTCTTACAC-GAAAT-T-AAATACGATGCCAACA
*
14549102 TCCCAGAC-GAGGTTTTACACGAAAT
1 TCCCAGACAG-GGTCTTACACGAAAT
14549127 CACATATCAG
Statistics
Matches: 57, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
42 19 0.33
43 8 0.14
44 27 0.47
45 3 0.05
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.23
Consensus pattern (42 bp):
TCCCAGACAGGGTCTTACACGAAATTAAATACGATGCCAACA
Found at i:14554925 original size:7 final size:7
Alignment explanation
Indices: 14554910--14554947 Score: 67
Period size: 7 Copynumber: 5.4 Consensus size: 7
14554900 CGACTTTGTC
14554910 TTTTCTT
1 TTTTCTT
*
14554917 TTTTATT
1 TTTTCTT
14554924 TTTTCTT
1 TTTTCTT
14554931 TTTTCTT
1 TTTTCTT
14554938 TTTTCTT
1 TTTTCTT
14554945 TTT
1 TTT
14554948 CAGAAATTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.03, C:0.11, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTTCTT
Found at i:14559794 original size:11 final size:11
Alignment explanation
Indices: 14559778--14559802 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14559768 TGTATCGCAG
14559778 AAAAAAAAAGA
1 AAAAAAAAAGA
14559789 AAAAAAAAAGA
1 AAAAAAAAAGA
14559800 AAA
1 AAA
14559803 CACAGAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAGA
Found at i:14562713 original size:43 final size:43
Alignment explanation
Indices: 14562461--14562832 Score: 285
Period size: 43 Copynumber: 8.7 Consensus size: 43
14562451 TACATCGAAA
* * * * *
14562461 AAAATATACTGGCACACATAATGCTTCATCGGATAAACCGAAG
1 AAAATATACTAGCACACACAATGCATCATCAGATAAACTGAAG
* ** * * *
14562504 CATCTATACT-G-ACACACATAGTGCATCATCGGATACA-TCAAAG
1 AAAATATACTAGCACACACA-A-TGCATCATCAGATAAACT-GAAG
* *
14562547 AAAATATACT-G-ACACACATAGTGTATCATCAGATAAATTGAAG
1 AAAATATACTAGCACACACA-A-TGCATCATCAGATAAACTGAAG
*
14562590 AAAATATACTAGCACACACAATGTATCATCAGATAAACTGAAG
1 AAAATATACTAGCACACACAATGCATCATCAGATAAACTGAAG
* * * *
14562633 AAAACATACTAGTACACACACTGTATCATCAGATAAACTGAAG
1 AAAATATACTAGCACACACAATGCATCATCAGATAAACTGAAG
** *
14562676 AAAATATACTAGCACACACAATGCATCATC-GAATAAACAAAAT
1 AAAATATACTAGCACACACAATGCATCATCAG-ATAAACTGAAG
* ** * * *
14562719 CATCTACACTGGCACTCACAATGCATCATCAGATAAA-TCGAAG
1 AAAATATACTAGCACACACAATGCATCATCAGATAAACT-GAAG
* * * * * **
14562762 -AAATATATTGGCACACATAGTGAATC-TTTGAATAAACTGAAG
1 AAAATATACTAGCACACACAATGCATCATCAG-ATAAACTGAAG
* *
14562804 AAAATATACTAGCACACATAGTGCATCAT
1 AAAATATACTAGCACACACAATGCATCAT
14562833 TGGATATACC
Statistics
Matches: 268, Mismatches: 48, Indels: 25
0.79 0.14 0.07
Matches are distributed among these distances:
41 8 0.03
42 30 0.11
43 218 0.81
44 5 0.02
45 7 0.03
ACGTcount: A:0.44, C:0.20, G:0.13, T:0.23
Consensus pattern (43 bp):
AAAATATACTAGCACACACAATGCATCATCAGATAAACTGAAG
Found at i:14563459 original size:55 final size:55
Alignment explanation
Indices: 14563375--14563487 Score: 199
Period size: 55 Copynumber: 2.1 Consensus size: 55
14563365 TAATCTACAA
14563375 CATAGCTCAACTCATCATACATTTTTTAATATAAAACAATATAGTTAACTATCAG
1 CATAGCTCAACTCATCATACATTTTTTAATATAAAACAATATAGTTAACTATCAG
* * *
14563430 CATAGCTCAATTTATCATACATTTTTTAATATAAAATAATATAGTTAACTATCAG
1 CATAGCTCAACTCATCATACATTTTTTAATATAAAACAATATAGTTAACTATCAG
14563485 CAT
1 CAT
14563488 CCAAATCCTA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.42, C:0.16, G:0.05, T:0.37
Consensus pattern (55 bp):
CATAGCTCAACTCATCATACATTTTTTAATATAAAACAATATAGTTAACTATCAG
Found at i:14570811 original size:13 final size:14
Alignment explanation
Indices: 14570785--14570820 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
14570775 AAGAATATCA
14570785 TTTAAAATTATTAT
1 TTTAAAATTATTAT
14570799 TTTAAAATT-TTAT
1 TTTAAAATTATTAT
14570812 TATTAAAAT
1 T-TTAAAAT
14570821 AAATTTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 5 0.24
14 16 0.76
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
TTTAAAATTATTAT
Found at i:14570826 original size:18 final size:18
Alignment explanation
Indices: 14570803--14570866 Score: 62
Period size: 18 Copynumber: 3.6 Consensus size: 18
14570793 TATTATTTTA
14570803 AAATTTTATTATTAAAAT
1 AAATTTTATTATTAAAAT
*
14570821 AAATTTTAAATATT-AAAT
1 AAATTTT-ATTATTAAAAT
**
14570839 -AA-TTTATTAAAATAAAT
1 AAATTTTATTATTA-AAAT
14570856 AAATTTTATTA
1 AAATTTTATTA
14570867 ATAATTTATT
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
15 3 0.08
16 3 0.08
17 6 0.16
18 13 0.35
19 12 0.32
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
AAATTTTATTATTAAAAT
Found at i:14571635 original size:6 final size:6
Alignment explanation
Indices: 14571624--14571651 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
14571614 AAGTAATAAT
14571624 TATTTA TATTTA TATTTA TATTTA TATT
1 TATTTA TATTTA TATTTA TATTTA TATT
14571652 AAATCATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TATTTA
Found at i:14576088 original size:22 final size:21
Alignment explanation
Indices: 14576053--14576110 Score: 53
Period size: 22 Copynumber: 2.7 Consensus size: 21
14576043 AAAAGGTATC
* * *
14576053 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAAAT
14576074 TACAAAATCATATCTTCTAAAAT
1 TAC-AAATCATATC-TCTAAAAT
* *
14576097 TGCATATCATATCT
1 TACAAATCATATCT
14576111 AAGATTGCAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 4 0.13
22 17 0.57
23 9 0.30
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAAAT
Found at i:14577218 original size:44 final size:43
Alignment explanation
Indices: 14577155--14577320 Score: 215
Period size: 44 Copynumber: 3.8 Consensus size: 43
14577145 ATCTGCTATT
* *
14577155 TTCAACCTACTCCACTGCTGCTTAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGC-CAGGGAGATAGGATTCACAATC
* * *
14577199 TTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATC
1 TTCAACCTATTCCACTGCTG-CCAGGGAGATAGGATTCACAATC
**
14577243 TTCAACCTATTCCACTATTGACCAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTG-CCAGGGAGATAGGATTCACAATC
* *
14577287 TTTAACCTATTCCACTGCTAACCAGGGAGATAGG
1 TTCAACCTATTCCACTGCT-GCCAGGGAGATAGG
14577321 GCTGGGGTCA
Statistics
Matches: 105, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
44 104 0.99
45 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (43 bp):
TTCAACCTATTCCACTGCTGCCAGGGAGATAGGATTCACAATC
Found at i:14577382 original size:88 final size:88
Alignment explanation
Indices: 14577320--14577724 Score: 596
Period size: 88 Copynumber: 4.6 Consensus size: 88
14577310 AGGGAGATAG
* * *
14577320 GGCTGGGGTCATCGATCTGCTTCGCTGTCGGTGCAGGAAGACAAGATCTGCTATTTTTAACCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
*
14577385 TCCGCTGCAACCCAGGGAAGCAA
66 TCCGCTGCAACCCAGGGAGGCAA
*
14577408 GGCTGGTGTCTTCGATCTGCTTCGATGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
*
14577473 TCCGCTGCAA-CCAAGGAGGCAA
66 TCCGCTGCAACCCAGGGAGGCAA
* * * * * *
14577495 GACTGGTGTCTTGGATCTGCTTCGCTGCCGGTGCAGGAAGGCAAGATCTGCTATTCTTAGCCTAC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
* *
14577560 TCCGCTACAACCCAGTGAGGCAA
66 TCCGCTGCAACCCAGGGAGGCAA
* * *
14577583 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAAGAAAGATCTGCTATTTTTAGCCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
14577648 TCCGCTGCAACCCAGGGAGGCAA
66 TCCGCTGCAACCCAGGGAGGCAA
* * * * * *
14577671 GACTGGTGTCTTCAATTTGCTTCGTTTTCGGTGCAGGAAGGCAAGGTCTGCTAT
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTAT
14577725 CTTCGATCTA
Statistics
Matches: 283, Mismatches: 33, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
87 77 0.27
88 206 0.73
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.27
Consensus pattern (88 bp):
GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
TCCGCTGCAACCCAGGGAGGCAA
Found at i:14577542 original size:175 final size:176
Alignment explanation
Indices: 14577322--14577724 Score: 610
Period size: 175 Copynumber: 2.3 Consensus size: 176
14577312 GGAGATAGGG
* * * * *
14577322 CTGGGGTCATCGATCTGCTTCGCTGTCGGTGCAGGAAGACAAGATCTGCTATTTTTAACCTGCTC
1 CTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTCTTAACCTACTC
* * *
14577387 CGCTGCAACCCAGGGAAGCAAGGCTGGTGTCTTCGATCTGCTTCGATGTCGGTGCAGGAAGGCAA
66 CGCTACAACCCAGGGAAGCAAGGCTGGTGTCTTCGATCTGCTTCGATGTCGGTGCAGGAAAGAAA
14577452 GATCTGCTATTTTTAACCTGCTCCGCTGCAA-CCAAGGAGGCAAGA
131 GATCTGCTATTTTTAACCTGCTCCGCTGCAACCCAAGGAGGCAAGA
* * *
14577497 CTGGTGTCTTGGATCTGCTTCGCTGCCGGTGCAGGAAGGCAAGATCTGCTATTCTTAGCCTACTC
1 CTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTCTTAACCTACTC
* * *
14577562 CGCTACAACCCAGTGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAAGAAA
66 CGCTACAACCCAGGGAAGCAAGGCTGGTGTCTTCGATCTGCTTCGATGTCGGTGCAGGAAAGAAA
* *
14577627 GATCTGCTATTTTTAGCCTGCTCCGCTGCAACCCAGGGAGGCAAGA
131 GATCTGCTATTTTTAACCTGCTCCGCTGCAACCCAAGGAGGCAAGA
* * * * *
14577673 CTGGTGTCTTCAATTTGCTTCGTTTTCGGTGCAGGAAGGCAAGGTCTGCTAT
1 CTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTAT
14577725 CTTCGATCTA
Statistics
Matches: 204, Mismatches: 23, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
175 146 0.72
176 58 0.28
ACGTcount: A:0.20, C:0.25, G:0.28, T:0.27
Consensus pattern (176 bp):
CTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTCTTAACCTACTC
CGCTACAACCCAGGGAAGCAAGGCTGGTGTCTTCGATCTGCTTCGATGTCGGTGCAGGAAAGAAA
GATCTGCTATTTTTAACCTGCTCCGCTGCAACCCAAGGAGGCAAGA
Found at i:14577772 original size:44 final size:44
Alignment explanation
Indices: 14577705--14578392 Score: 623
Period size: 44 Copynumber: 15.5 Consensus size: 44
14577695 TTTTCGGTGC
* * * *
14577705 AGGAAGGCAAGGTCTGCTATCTTCGATCTACTTCACGCCAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATAT
* * * * * *
14577749 ATGAAGACAATATCTGCTTTCTTCAATCTACTTCGCCACCAGTAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACACCAATAT
* *
14577794 GGGAAGACAAGATCTGC-ATCTTCGATCCACTTCACTACCAATAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACCAATAT
* * * **
14577838 AGGAAGACAGGATCTGCCATCTTCGATCTACTTCACGCCAATGC
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATAT
* * *
14577882 ATGAAGACAAGATCTGCTTTCTTCGATCTACTTAACCACCAATAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCA-CACCAATAT
* *
14577927 -GGTAAGACAAGATCTGC-ATCTTCGATCCACTTCGCTACCAATAT
1 AGG-AAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACCAATAT
* * * * * *
14577971 AAGAAGACAGGATATGCTATCTTTGATCTACTTCACGCCAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATAT
* * * * *
14578015 ATGAAGACAAAATCTGCTTTCTTCGATCTACTTCGCCACCAGTAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACACCAATAT
* * * * * **
14578060 GGGAAGAGAAAATCTGC-ATATTCGATCCACTTTGCTACCAATAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACCAATAT
* * * *
14578104 AGGAAGACAGGATCTGCTACCTTCGATCTACTTCACGCCAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATAT
* * * * *
14578148 ATGAAGACAAAATCTGCTTTCTTCGATCTACTTCGCCACCAGTAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACACCAATAT
* * * **
14578193 GGGAAGAGAAGATCTGC-ATCTTCGATCCACTTTGCTACCAATAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACCAATAT
* * * * *
14578237 AGGAAGACAGGATCTACTACCTTCGATCTACTTCACTCCAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATAT
* * * *
14578281 ATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACACCAATAT
* * *
14578326 GGGAAGACAAGATCTGC-ATCTTCGATCCACTTCGCTACCAATAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACCAATAT
* *
14578370 AAGAAGACAGGATCTGCTATCTT
1 AGGAAGACAAGATCTGCTATCTT
14578393 TACTGATCTG
Statistics
Matches: 506, Mismatches: 121, Indels: 33
0.77 0.18 0.05
Matches are distributed among these distances:
43 5 0.01
44 336 0.66
45 165 0.33
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (44 bp):
AGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATAT
Found at i:14577911 original size:133 final size:133
Alignment explanation
Indices: 14577717--14578392 Score: 1127
Period size: 133 Copynumber: 5.1 Consensus size: 133
14577707 GAAGGCAAGG
* *
14577717 TCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAATATCTGCTTTCTTCAATCTACTT
1 TCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAAATCTGCTTTCTTCGATCTACTT
*
14577782 CGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACTTCACTACCAATATAGGAAGACA
66 CGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAATATAGGAAGACA
14577847 GGA
131 GGA
* * *
14577850 TCTGCCATCTTCGATCTACTTCACGCCAATGCATGAAGACAAGATCTGCTTTCTTCGATCTACTT
1 TCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAAATCTGCTTTCTTCGATCTACTT
** * * *
14577915 AACCACCAATATGGTAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAATATAAGAAGACA
66 CGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAATATAGGAAGACA
14577980 GGA
131 GGA
* *
14577983 TATGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAAATCTGCTTTCTTCGATCTACTT
1 TCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAAATCTGCTTTCTTCGATCTACTT
* * * *
14578048 CGCCACCAGTATGGGAAGAGAAAATCTGCATATTCGATCCACTTTGCTACCAATATAGGAAGACA
66 CGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAATATAGGAAGACA
14578113 GGA
131 GGA
*
14578116 TCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAAATCTGCTTTCTTCGATCTACTT
1 TCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAAATCTGCTTTCTTCGATCTACTT
* *
14578181 CGCCACCAGTATGGGAAGAGAAGATCTGCATCTTCGATCCACTTTGCTACCAATATAGGAAGACA
66 CGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAATATAGGAAGACA
14578246 GGA
131 GGA
* * * *
14578249 TCTACTACCTTCGATCTACTTCACTCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTT
1 TCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAAATCTGCTTTCTTCGATCTACTT
*
14578314 CGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAATATAAGAAGACA
66 CGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAATATAGGAAGACA
14578379 GGA
131 GGA
14578382 TCTGCTATCTT
1 TCTGCTATCTT
14578393 TACTGATCTG
Statistics
Matches: 506, Mismatches: 37, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
133 506 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (133 bp):
TCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAAATCTGCTTTCTTCGATCTACTT
CGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAATATAGGAAGACA
GGA
Found at i:14584820 original size:19 final size:19
Alignment explanation
Indices: 14584765--14584841 Score: 82
Period size: 19 Copynumber: 3.8 Consensus size: 19
14584755 AAATTAAATC
*
14584765 TCTAAGATTACAAAATCATA
1 TCTAAGATTAC-ATATCATA
* *
14584785 TCTTCTAAAATTGCATATCATA
1 ---TCTAAGATTACATATCATA
14584807 TCTAAGATTACATATCATA
1 TCTAAGATTACATATCATA
*
14584826 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
14584842 CTTGAAGATT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
19 32 0.67
22 7 0.15
23 9 0.19
ACGTcount: A:0.40, C:0.17, G:0.06, T:0.36
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:14584838 original size:38 final size:40
Alignment explanation
Indices: 14584765--14584841 Score: 104
Period size: 38 Copynumber: 1.9 Consensus size: 40
14584755 AAATTAAATC
14584765 TCTAAGATTACAAAATCATATCTTCTAAAATTGCATATCATA
1 TCTAAGATTACAAAATCATA--TTCTAAAATTGCATATCATA
* *
14584807 TCTAAGATTAC-ATATCATA-TCTAAGATTGCATATC
1 TCTAAGATTACAAAATCATATTCTAAAATTGCATATC
14584842 CTTGAAGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
38 15 0.45
41 7 0.21
42 11 0.33
ACGTcount: A:0.40, C:0.17, G:0.06, T:0.36
Consensus pattern (40 bp):
TCTAAGATTACAAAATCATATTCTAAAATTGCATATCATA
Found at i:14591750 original size:27 final size:28
Alignment explanation
Indices: 14591698--14591750 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
14591688 AAAATAATTA
*
14591698 AAATTAAATATGTTCATAATTTAAGTGC
1 AAATTAAATATGTTCATAATTAAAGTGC
* *
14591726 AAATTAATTAT-TTTATAATTAAAGT
1 AAATTAAATATGTTCATAATTAAAGT
14591751 ATGAATTTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 12 0.55
28 10 0.45
ACGTcount: A:0.45, C:0.04, G:0.08, T:0.43
Consensus pattern (28 bp):
AAATTAAATATGTTCATAATTAAAGTGC
Found at i:14595418 original size:17 final size:17
Alignment explanation
Indices: 14595393--14595426 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
14595383 TATATTTATT
* *
14595393 TTTTTAAATTTTTTTAA
1 TTTTAAAATATTTTTAA
14595410 TTTTAAAATATTTTTAA
1 TTTTAAAATATTTTTAA
14595427 AATAATTTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTTAAAATATTTTTAA
Found at i:14595435 original size:41 final size:38
Alignment explanation
Indices: 14595389--14595484 Score: 138
Period size: 41 Copynumber: 2.4 Consensus size: 38
14595379 TAAATATATT
14595389 TATTTTTTTAAATTTTTTTAATTTTAAAATATTTTTAAAA
1 TATTTTTTT-AATTTTTTTAATTTTAAAATA-TTTTAAAA
*
14595429 TAATTTTTTTATTATTTTTTAATTTTAAAATATTTTAAAA
1 T-ATTTTTTTAAT-TTTTTTAATTTTAAAATATTTTAAAA
*
14595469 TACTTTTTTAATTTTT
1 TATTTTTTTAATTTTT
14595485 AAAATAATTT
Statistics
Matches: 51, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
38 4 0.08
39 9 0.18
40 12 0.24
41 26 0.51
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (38 bp):
TATTTTTTTAATTTTTTTAATTTTAAAATATTTTAAAA
Found at i:14595455 original size:30 final size:32
Alignment explanation
Indices: 14595419--14595498 Score: 105
Period size: 30 Copynumber: 2.6 Consensus size: 32
14595409 ATTTTAAAAT
*
14595419 ATTTTTAAAATAATTTTTTTATTA-TTTTTTA
1 ATTTTTAAAATAATTTTTTTAATACTTTTTTA
**
14595450 A-TTTTAAAAT-A-TTTTAAAATACTTTTTTA
1 ATTTTTAAAATAATTTTTTTAATACTTTTTTA
14595479 ATTTTTAAAATAATTTTTTT
1 ATTTTTAAAATAATTTTTTT
14595499 GTATTTATTA
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
28 7 0.17
29 9 0.22
30 18 0.45
31 2 0.05
32 4 0.10
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.62
Consensus pattern (32 bp):
ATTTTTAAAATAATTTTTTTAATACTTTTTTA
Found at i:14595493 original size:41 final size:41
Alignment explanation
Indices: 14595407--14595495 Score: 110
Period size: 41 Copynumber: 2.2 Consensus size: 41
14595397 TAAATTTTTT
* **
14595407 TAATTTTAAAATATTTTTAAAATAATTTTTTTATTATTTTT
1 TAATTTTAAAATATTTTTAAAATAATTTTTTAATTATTTAA
*
14595448 TAATTTTAAAATA-TTTTAAAATACTTTTTTAATT-TTTAAAA
1 TAATTTTAAAATATTTTTAAAATAATTTTTTAATTATTT--AA
14595489 TAATTTT
1 TAATTTT
14595496 TTTGTATTTA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
39 3 0.07
40 19 0.45
41 20 0.48
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (41 bp):
TAATTTTAAAATATTTTTAAAATAATTTTTTAATTATTTAA
Found at i:14595505 original size:20 final size:20
Alignment explanation
Indices: 14595422--14595497 Score: 57
Period size: 20 Copynumber: 3.8 Consensus size: 20
14595412 TTAAAATATT
*
14595422 TTTAAAATAATTTTTTTATTA
1 TTTAAAATAA-TTTTTTAATA
** **
14595443 TTT--TTTAATTTTAAAATA
1 TTTAAAATAATTTTTTAATA
* *
14595461 TTTTAAAATACTTTTTTAATT
1 -TTTAAAATAATTTTTTAATA
14595482 TTTAAAATAATTTTTT
1 TTTAAAATAATTTTTT
14595498 TGTATTTATT
Statistics
Matches: 40, Mismatches: 12, Indels: 7
0.68 0.20 0.12
Matches are distributed among these distances:
18 7 0.17
19 6 0.15
20 15 0.38
21 12 0.30
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTAAAATAATTTTTTAATA
Found at i:14595836 original size:28 final size:29
Alignment explanation
Indices: 14595785--14595840 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 29
14595775 TTTTCCAATA
14595785 AATATTTACAGAAAAAGACAATTAATTTC
1 AATATTTACAGAAAAAGACAATTAATTTC
* *
14595814 AATATTTACA-AAAATGGCAATTAATTT
1 AATATTTACAGAAAAAGACAATTAATTT
14595841 TTGCAAATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 15 0.60
29 10 0.40
ACGTcount: A:0.50, C:0.09, G:0.07, T:0.34
Consensus pattern (29 bp):
AATATTTACAGAAAAAGACAATTAATTTC
Found at i:14599714 original size:21 final size:23
Alignment explanation
Indices: 14599671--14599715 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
14599661 TTCTGGCAAT
*
14599671 AAATTCTTAGTTTTGTGTCTTAA
1 AAATTCTTAGTTTTGTATCTTAA
*
14599694 AAATT-TTAGTTTTTTAT-TTAA
1 AAATTCTTAGTTTTGTATCTTAA
14599715 A
1 A
14599716 TTTATTCTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 10 0.50
23 5 0.25
ACGTcount: A:0.31, C:0.04, G:0.09, T:0.56
Consensus pattern (23 bp):
AAATTCTTAGTTTTGTATCTTAA
Found at i:14621536 original size:56 final size:56
Alignment explanation
Indices: 14621449--14621561 Score: 172
Period size: 56 Copynumber: 2.0 Consensus size: 56
14621439 GAGGGGGTGT
* *
14621449 TAGGATATTATTATGGGATATTACCTATTAGCAATTTTATTCATAATGAGATGTTA
1 TAGGATATTATTATGGGATATTACCTATTAGCAATTTGATTCATAATGAGATATTA
* * * *
14621505 TAGGATATTATTATGGGATATTATCTCTTAGCAATTTGATTCCTAATGGGATATTA
1 TAGGATATTATTATGGGATATTACCTATTAGCAATTTGATTCATAATGAGATATTA
14621561 T
1 T
14621562 TGTTTAGCAA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 51 1.00
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.43
Consensus pattern (56 bp):
TAGGATATTATTATGGGATATTACCTATTAGCAATTTGATTCATAATGAGATATTA
Found at i:14621559 original size:33 final size:33
Alignment explanation
Indices: 14621517--14621582 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
14621507 GGATATTATT
14621517 ATGGGATATTATCT-CTTAGCAATTTGATTCCTA
1 ATGGGATATTAT-TGCTTAGCAATTTGATTCCTA
*
14621550 ATGGGATATTATTGTTTAGCAATTTGATTCCTA
1 ATGGGATATTATTGCTTAGCAATTTGATTCCTA
14621583 CGTATCTACT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 1 0.03
33 30 0.97
ACGTcount: A:0.27, C:0.12, G:0.17, T:0.44
Consensus pattern (33 bp):
ATGGGATATTATTGCTTAGCAATTTGATTCCTA
Found at i:14631079 original size:172 final size:173
Alignment explanation
Indices: 14630792--14631136 Score: 656
Period size: 172 Copynumber: 2.0 Consensus size: 173
14630782 CGCCTGAGGT
14630792 CACGACAAAGTCAGGTGTGTTTTTTTTACGAAAAATTGACTCAAAATTTGAAACTTCCCAGTTGC
1 CACGACAAAGTCAGGTGTGTTTTTTTTACGAAAAATTGACTCAAAATTTGAAACTTCCCAGTTGC
14630857 ACATAGCCTACCACACGAACGTGTTGCTTGTCCGTATGGATCACACGGCCTCGCACACGACCATG
66 ACATAGCCTACCACACGAACGTGTTGCTTGTCCGTATGGATCACACGGCCTCGCACACGACCATG
* *
14630922 TCTCCTTATTTTACCCTGCATCCGTGTTTTGCACACGGCCTGA
131 TCTCCTTACTTTACCCTGCATCCGCGTTTTGCACACGGCCTGA
14630965 CACGACAAAGTCAGGTGTG-TTTTTTTACGAAAAATTGACTCAAAATTTGAAACTTCCCAGTTGC
1 CACGACAAAGTCAGGTGTGTTTTTTTTACGAAAAATTGACTCAAAATTTGAAACTTCCCAGTTGC
*
14631029 ACATAGCCTACCACACGAACGTGTTGCTTGTCCGTATGGATTACACGGCCTCGCACACGACCATG
66 ACATAGCCTACCACACGAACGTGTTGCTTGTCCGTATGGATCACACGGCCTCGCACACGACCATG
14631094 TCTCCTTACTTTACCCTGCATCCGCGTTTTGCACACGGCCTGA
131 TCTCCTTACTTTACCCTGCATCCGCGTTTTGCACACGGCCTGA
14631137 AAACACAACC
Statistics
Matches: 169, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
172 150 0.89
173 19 0.11
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (173 bp):
CACGACAAAGTCAGGTGTGTTTTTTTTACGAAAAATTGACTCAAAATTTGAAACTTCCCAGTTGC
ACATAGCCTACCACACGAACGTGTTGCTTGTCCGTATGGATCACACGGCCTCGCACACGACCATG
TCTCCTTACTTTACCCTGCATCCGCGTTTTGCACACGGCCTGA
Done.