Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 49 of 222
Found at i:14632538 original size:13 final size:13
Alignment explanation
Indices: 14632520--14632544 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14632510 TTCACCAATG
14632520 ATTTATTATTATT
1 ATTTATTATTATT
14632533 ATTTATTATTAT
1 ATTTATTATTAT
14632545 GATTATCGCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
ATTTATTATTATT
Found at i:14635409 original size:15 final size:16
Alignment explanation
Indices: 14635389--14635418 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14635379 GTCAATATTT
14635389 AATT-AATTTTAAAAA
1 AATTAAATTTTAAAAA
14635404 AATTAAATTTTAAAA
1 AATTAAATTTTAAAA
14635419 TTTTAAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
AATTAAATTTTAAAAA
Found at i:14635483 original size:9 final size:8
Alignment explanation
Indices: 14635408--14635488 Score: 63
Period size: 8 Copynumber: 9.1 Consensus size: 8
14635398 TAAAAAAATT
14635408 AAATTTTA
1 AAATTTTA
14635416 AAATTTTA
1 AAATTTTA
14635424 AAATTTTA
1 AAATTTTA
*
14635432 AAATCATTA
1 AAAT-TTTA
14635441 AAATTATTTGA
1 AAA-T-TTT-A
14635452 AATACTTTTTA
1 AA-A--TTTTA
*
14635463 ATATTTTTA
1 A-AATTTTA
14635472 AAATTTTA
1 AAATTTTA
*
14635480 AAAATTTA
1 AAATTTTA
14635488 A
1 A
14635489 TTAAATGTTG
Statistics
Matches: 61, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
8 34 0.56
9 12 0.20
10 3 0.05
11 5 0.08
12 5 0.08
13 2 0.03
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.48
Consensus pattern (8 bp):
AAATTTTA
Found at i:14636057 original size:21 final size:21
Alignment explanation
Indices: 14636033--14636078 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
14636023 AAAAATTACA
*
14636033 AAAAAAATCAAAATAA-TTTT
1 AAAAAAATAAAAATAACTTTT
*
14636053 CAAAAAATTAAAAATAACTTTT
1 -AAAAAAATAAAAATAACTTTT
14636075 AAAA
1 AAAA
14636079 TTCAAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (21 bp):
AAAAAAATAAAAATAACTTTT
Found at i:14636137 original size:21 final size:21
Alignment explanation
Indices: 14636111--14636173 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
14636101 CAATTTTTTT
*
14636111 AAAAAATTATAAAAATTTCA-A
1 AAAAAACTATAAAAATTT-ATA
*
14636132 AAAAAACTATAAAAATATATA
1 AAAAAACTATAAAAATTTATA
* *
14636153 AAAAAAGT-TAAAAATTAATA
1 AAAAAACTATAAAAATTTATA
14636173 A
1 A
14636174 TTTTCTAGAA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
20 12 0.33
21 24 0.67
ACGTcount: A:0.70, C:0.03, G:0.02, T:0.25
Consensus pattern (21 bp):
AAAAAACTATAAAAATTTATA
Found at i:14637393 original size:6 final size:6
Alignment explanation
Indices: 14637384--14637411 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
14637374 GCTTCTTCTT
14637384 CTTCCC CTTCCC CTTCCC CTTCCC CTTC
1 CTTCCC CTTCCC CTTCCC CTTCCC CTTC
14637412 TTACAATTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.64, G:0.00, T:0.36
Consensus pattern (6 bp):
CTTCCC
Found at i:14643832 original size:20 final size:21
Alignment explanation
Indices: 14643803--14643846 Score: 56
Period size: 19 Copynumber: 2.1 Consensus size: 21
14643793 AGACACAATG
*
14643803 AGAAAGAGAGAGAAAGTAAA-A
1 AGAAAGAGAG-CAAAGTAAACA
14643824 AGAAA-AGAGCAAAGTAAACA
1 AGAAAGAGAGCAAAGTAAACA
14643844 AGA
1 AGA
14643847 TTGAGTCTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 8 0.38
20 8 0.38
21 5 0.24
ACGTcount: A:0.66, C:0.05, G:0.25, T:0.05
Consensus pattern (21 bp):
AGAAAGAGAGCAAAGTAAACA
Found at i:14645789 original size:8 final size:8
Alignment explanation
Indices: 14645776--14645800 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
14645766 CCAAGAGAAT
14645776 AATTAAAC
1 AATTAAAC
14645784 AATTAAAC
1 AATTAAAC
14645792 AATTAAAC
1 AATTAAAC
14645800 A
1 A
14645801 CAACCCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (8 bp):
AATTAAAC
Found at i:14648000 original size:41 final size:40
Alignment explanation
Indices: 14647955--14648056 Score: 132
Period size: 41 Copynumber: 2.5 Consensus size: 40
14647945 TGATTCAGTA
14647955 CACCGGCACTTAGCCTGCTAGACATATAGTCTGAAATATTT
1 CACCGGCA-TTAGCCTGCTAGACATATAGTCTGAAATATTT
* * * *
14647996 CACCGGCATTAAGCCTGCTAGACATTTTGTCTGAAGTGTTT
1 CACCGGCATT-AGCCTGCTAGACATATAGTCTGAAATATTT
*
14648037 CACCGGCAATAAGCCTGCTA
1 CACCGGC-ATTAGCCTGCTA
14648057 AGCTCTAAGC
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
40 2 0.04
41 50 0.93
42 2 0.04
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.28
Consensus pattern (40 bp):
CACCGGCATTAGCCTGCTAGACATATAGTCTGAAATATTT
Found at i:14649728 original size:13 final size:13
Alignment explanation
Indices: 14649710--14649734 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14649700 CAATCAAATG
14649710 CACACAAAATAAA
1 CACACAAAATAAA
14649723 CACACAAAATAA
1 CACACAAAATAA
14649735 TATTAATAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (13 bp):
CACACAAAATAAA
Found at i:14654738 original size:22 final size:23
Alignment explanation
Indices: 14654697--14654739 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
14654687 TTGTTATGAC
*
14654697 AATGCAATATTTTCTGAAAATAT
1 AATGCAATATTTTCTAAAAATAT
*
14654720 AATGC-ATATTTTTTAAAAAT
1 AATGCAATATTTTCTAAAAAT
14654740 TTCCTACCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.42
Consensus pattern (23 bp):
AATGCAATATTTTCTAAAAATAT
Found at i:14657088 original size:88 final size:88
Alignment explanation
Indices: 14656907--14657091 Score: 273
Period size: 88 Copynumber: 2.1 Consensus size: 88
14656897 TTAAGAGTTT
* *
14656907 AAAAAGCCCTCAAACTTTTTCAAAACAAAGCAATTAAGCCCCTGCTTTTTTTTGCACTCAATTAG
1 AAAAAGCCATCAAACTTTTTCAAAAAAAAGCAATTAAGCCCCT-CTTTTTTTTGCACTCAATTAG
** *
14656972 GTACTTGAACTTTCAAAATGCTTT
65 GTACTTGAACTGCCAAAATGCTTC
* *
14656996 AAAAATGCCATCAAAGTTTTTCAAAAAAAAGCAATTAAGCCCCT-TTTTTTTTGCACTCAATTGG
1 AAAAA-GCCATCAAACTTTTTCAAAAAAAAGCAATTAAGCCCCTCTTTTTTTTGCACTCAATTAG
*
14657060 GTACTTGAACTGCCAAAGTGCTTC
65 GTACTTGAACTGCCAAAATGCTTC
14657084 AAAAAGCC
1 AAAAAGCC
14657092 CCTTTAACAG
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
87 3 0.03
88 44 0.51
89 5 0.06
90 35 0.40
ACGTcount: A:0.35, C:0.22, G:0.12, T:0.31
Consensus pattern (88 bp):
AAAAAGCCATCAAACTTTTTCAAAAAAAAGCAATTAAGCCCCTCTTTTTTTTGCACTCAATTAGG
TACTTGAACTGCCAAAATGCTTC
Found at i:14657219 original size:16 final size:15
Alignment explanation
Indices: 14657200--14657239 Score: 62
Period size: 16 Copynumber: 2.6 Consensus size: 15
14657190 AAAAAAGATG
14657200 ATAAAAATAAAAATAA
1 ATAAAAATAAAAAT-A
*
14657216 ATAAAAATAAAAATT
1 ATAAAAATAAAAATA
14657231 ATAAAAATA
1 ATAAAAATA
14657240 TTAAATTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 9 0.39
16 14 0.61
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.23
Consensus pattern (15 bp):
ATAAAAATAAAAATA
Found at i:14657234 original size:9 final size:9
Alignment explanation
Indices: 14657222--14657311 Score: 58
Period size: 9 Copynumber: 9.7 Consensus size: 9
14657212 ATAAATAAAA
14657222 ATAAAAATT
1 ATAAAAATT
14657231 ATAAAAA-T
1 ATAAAAATT
*
14657239 AT-TAAATT
1 ATAAAAATT
* *
14657247 TTAATTAAAAT
1 ATAA--AAATT
14657258 ATAAAAATT
1 ATAAAAATT
* *
14657267 ACAAAAACCGT
1 ATAAAAA--TT
*
14657278 AAAAAAATT
1 ATAAAAATT
14657287 ATAAAAATTT
1 ATAAAAA-TT
14657297 ATAAAAATT
1 ATAAAAATT
*
14657306 GTAAAA
1 ATAAAA
14657312 TAAAATAAAA
Statistics
Matches: 62, Mismatches: 12, Indels: 14
0.70 0.14 0.16
Matches are distributed among these distances:
7 3 0.05
8 5 0.08
9 31 0.50
10 9 0.15
11 14 0.23
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.31
Consensus pattern (9 bp):
ATAAAAATT
Found at i:14657302 original size:19 final size:18
Alignment explanation
Indices: 14657222--14657311 Score: 58
Period size: 20 Copynumber: 4.8 Consensus size: 18
14657212 ATAAATAAAA
14657222 ATAAAAATTATAAAAA-T
1 ATAAAAATTATAAAAATT
* * *
14657239 AT-TAAATTTTAATTAAAAT
1 ATAAAAATTATAA--AAATT
* *
14657258 ATAAAAATTACAAAAACCGT
1 ATAAAAATTATAAAAA--TT
*
14657278 AAAAAAATTATAAAAATTT
1 ATAAAAATTATAAAAA-TT
*
14657297 ATAAAAATTGTAAAA
1 ATAAAAATTATAAAA
14657312 TAAAATAAAA
Statistics
Matches: 55, Mismatches: 12, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
16 8 0.15
17 2 0.04
18 6 0.11
19 17 0.31
20 22 0.40
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.31
Consensus pattern (18 bp):
ATAAAAATTATAAAAATT
Found at i:14657302 original size:29 final size:28
Alignment explanation
Indices: 14657253--14657381 Score: 93
Period size: 29 Copynumber: 4.4 Consensus size: 28
14657243 AATTTTAATT
* *
14657253 AAAATATAAAAA-TTACAAAAACCGTAAA
1 AAAATATAAAAATTTA-TAAAATCGTAAA
*
14657281 AAAATTATAAAAATTTATAAAAATTGTAAA
1 AAAA-TATAAAAATTTAT-AAAATCGTAAA
* *
14657311 ATAAA-AT-AAAATTTATAGAAATATAGGAAA
1 A-AAATATAAAAATTTAT--AAA-ATCGTAAA
* *
14657341 AAAATATAAAATTTTATAAAGTCGTAAGA
1 AAAATATAAAAATTTATAAAATCGTAA-A
*
14657370 AAATTATAAAAA
1 AAAATATAAAAA
14657382 AATGTAAAGA
Statistics
Matches: 80, Mismatches: 12, Indels: 17
0.73 0.11 0.16
Matches are distributed among these distances:
28 17 0.21
29 30 0.38
30 22 0.28
31 11 0.14
ACGTcount: A:0.64, C:0.03, G:0.06, T:0.27
Consensus pattern (28 bp):
AAAATATAAAAATTTATAAAATCGTAAA
Found at i:14657322 original size:28 final size:29
Alignment explanation
Indices: 14657278--14657360 Score: 89
Period size: 30 Copynumber: 2.8 Consensus size: 29
14657268 CAAAAACCGT
* *
14657278 AAAAAAATTATAAAAATTTATAAAA-ATTGT
1 AAAAAAA-TAT-AAAATTTATAAAATATAGG
14657308 AAAATAAA-ATAAAATTTATAGAAATATAGG
1 AAAA-AAATATAAAATTTATA-AAATATAGG
14657338 AAAAAAATATAAAATTTTATAAA
1 AAAAAAATATAAAA-TTTATAAA
14657361 GTCGTAAGAA
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
28 10 0.22
29 8 0.17
30 19 0.41
31 9 0.20
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (29 bp):
AAAAAAATATAAAATTTATAAAATATAGG
Found at i:14657406 original size:19 final size:19
Alignment explanation
Indices: 14657364--14657422 Score: 66
Period size: 19 Copynumber: 3.0 Consensus size: 19
14657354 TTATAAAGTC
**
14657364 GTAAGAAAATTATAAAAAAAT
1 GTAA-AAAATTAT-AAAATTT
14657385 GTAAAGAAA-TATAAAATTT
1 GTAAA-AAATTATAAAATTT
14657404 GTAAAAAATTATAAAATTT
1 GTAAAAAATTATAAAATTT
14657423 ATTGTACCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
18 3 0.09
19 20 0.59
20 4 0.12
21 7 0.21
ACGTcount: A:0.61, C:0.00, G:0.08, T:0.31
Consensus pattern (19 bp):
GTAAAAAATTATAAAATTT
Found at i:14657635 original size:9 final size:9
Alignment explanation
Indices: 14657621--14657753 Score: 119
Period size: 9 Copynumber: 14.4 Consensus size: 9
14657611 TTATAATTCA
*
14657621 TTTTATGAT
1 TTTTATAAT
*
14657630 TTTTATAAA
1 TTTTATAAT
*
14657639 TTTTACAAATT
1 TTTTA-TAA-T
14657650 TTTTATAAT
1 TTTTATAAT
*
14657659 TTCTATAAT
1 TTTTATAAT
14657668 TTTTATAAT
1 TTTTATAAT
14657677 TTTTATAAT
1 TTTTATAAT
14657686 TTTTAT-AT
1 TTTTATAAT
*
14657694 TTTTATTAAAA
1 TTTTA-T-AAT
*
14657705 TTTAATAAT
1 TTTTATAAT
*
14657714 TTTTATAAC
1 TTTTATAAT
*
14657723 TTTTATTGAT
1 TTTTA-TAAT
14657733 TTTTAT--T
1 TTTTATAAT
14657740 TTTTATAAAT
1 TTTTAT-AAT
14657750 TTTT
1 TTTT
14657754 TACCACATGT
Statistics
Matches: 101, Mismatches: 14, Indels: 17
0.77 0.11 0.13
Matches are distributed among these distances:
7 7 0.07
8 7 0.07
9 60 0.59
10 17 0.17
11 10 0.10
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (9 bp):
TTTTATAAT
Found at i:14657687 original size:37 final size:34
Alignment explanation
Indices: 14657620--14657753 Score: 108
Period size: 37 Copynumber: 3.7 Consensus size: 34
14657610 TTTATAATTC
* * *
14657620 ATTTTATGATTTTTATAAATTTTACAAATTTTTTAT
1 ATTTTATAATTTTTATAATTTTTA-TAA-TTTTTAT
14657656 AATTTCTATAATTTTTATAATTTTTATAATTTTTAT
1 -ATTT-TATAATTTTTATAATTTTTATAATTTTTAT
* * *
14657692 ATTTTTATTAAAATTTAATAATTTTTATAACTTTTATT
1 A-TTTTA-T-AATTTTTATAATTTTTATAATTTTTA-T
*
14657730 GATTTT-TATTTTTTATAAATTTTT
1 -ATTTTATAATTTTTAT-AATTTTT
14657754 TACCACATGT
Statistics
Matches: 81, Mismatches: 9, Indels: 15
0.77 0.09 0.14
Matches are distributed among these distances:
35 9 0.11
36 19 0.23
37 29 0.36
38 23 0.28
39 1 0.01
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.63
Consensus pattern (34 bp):
ATTTTATAATTTTTATAATTTTTATAATTTTTAT
Found at i:14665071 original size:50 final size:50
Alignment explanation
Indices: 14664959--14665255 Score: 283
Period size: 50 Copynumber: 5.8 Consensus size: 50
14664949 ATTTGGGTAA
* *
14664959 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATG
* * *
14665015 AGAGGTCTCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* *
14665065 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * * * *
14665115 AAAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCTATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * * * * *
14665165 AGAACTCCTATGTAAGACCATATCTGGGATATGACATTGGCA--GTACAAG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATG
* ** * * *
14665214 AAACATCCCATGTAAGACTATGTCTGGGACATAGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
14665256 TGTTATATTC
Statistics
Matches: 202, Mismatches: 38, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
49 35 0.17
50 125 0.62
53 3 0.01
55 1 0.00
56 38 0.19
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:14669465 original size:42 final size:42
Alignment explanation
Indices: 14669368--14669467 Score: 114
Period size: 42 Copynumber: 2.4 Consensus size: 42
14669358 AGGAGATTAC
* * *
14669368 ATAAACTACCATAAATATGTGGATAAACCACTAGAATTGCAG
1 ATAAACTGCCAGAAATATGTGGATAAACCACGAGAATTGCAG
*
14669410 ATAGACTGCCAGAAATATGTGGATGAAA-CACCGA-AATTGCAG
1 ATAAACTGCCAGAAATATGTGGAT-AAACCA-CGAGAATTGCAG
* *
14669452 ATAAATTGTCAGAAAT
1 ATAAACTGCCAGAAAT
14669468 TCCTCCTTAC
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
42 44 0.90
43 5 0.10
ACGTcount: A:0.44, C:0.15, G:0.18, T:0.23
Consensus pattern (42 bp):
ATAAACTGCCAGAAATATGTGGATAAACCACGAGAATTGCAG
Found at i:14669765 original size:17 final size:17
Alignment explanation
Indices: 14669743--14669778 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
14669733 GTCAGAGACA
14669743 CTTACATTCAGCCAACC
1 CTTACATTCAGCCAACC
14669760 CTTACATTCAGCCAACC
1 CTTACATTCAGCCAACC
14669777 CT
1 CT
14669779 AGTAAAGGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.42, G:0.06, T:0.25
Consensus pattern (17 bp):
CTTACATTCAGCCAACC
Found at i:14672828 original size:13 final size:11
Alignment explanation
Indices: 14672808--14672842 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
14672798 TTCCTTCCCC
14672808 CCCTCTCTC-T
1 CCCTCTCTCTT
14672818 CCCTTCTCTCTT
1 CCC-TCTCTCTT
14672830 CCCTCTCTCTT
1 CCCTCTCTCTT
14672841 CC
1 CC
14672843 TTTTTTTCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 3 0.13
11 16 0.70
12 4 0.17
ACGTcount: A:0.00, C:0.57, G:0.00, T:0.43
Consensus pattern (11 bp):
CCCTCTCTCTT
Found at i:14673334 original size:3 final size:3
Alignment explanation
Indices: 14673310--14673380 Score: 63
Period size: 3 Copynumber: 23.3 Consensus size: 3
14673300 AATATCCTTG
* * * *
14673310 TTA TTT TTA -TA TTA TTA GTA TTA TTA GTA TTA CTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
14673357 TGTA TTA GTA TATA TTT TTA TTA T
1 T-TA TTA TTA T-TA TTA TTA TTA T
14673381 GTACGCGTAT
Statistics
Matches: 53, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
2 2 0.04
3 45 0.85
4 6 0.11
ACGTcount: A:0.31, C:0.01, G:0.06, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:14673377 original size:23 final size:22
Alignment explanation
Indices: 14673322--14673383 Score: 81
Period size: 23 Copynumber: 2.8 Consensus size: 22
14673312 ATTTTTATAT
*
14673322 TATTAGTATTATTA-GTATTAC
1 TATTATTATTATTATGTATTAC
*
14673343 TATTATTATTATTATGTATTAG
1 TATTATTATTATTATGTATTAC
*
14673365 TATATATTTTTATTATGTA
1 TAT-TATTATTATTATGTA
14673384 CGCGTATATA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 13 0.36
22 9 0.25
23 14 0.39
ACGTcount: A:0.32, C:0.02, G:0.08, T:0.58
Consensus pattern (22 bp):
TATTATTATTATTATGTATTAC
Found at i:14673390 original size:23 final size:23
Alignment explanation
Indices: 14673346--14673394 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
14673336 GTATTACTAT
**
14673346 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTACGAGTATA
* *
14673369 TATTTTTATTATGTACGCGTATA
1 TATTATTATTATGTACGAGTATA
14673392 TAT
1 TAT
14673395 ATATATATAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.31, C:0.04, G:0.10, T:0.55
Consensus pattern (23 bp):
TATTATTATTATGTACGAGTATA
Found at i:14673455 original size:25 final size:24
Alignment explanation
Indices: 14673408--14673455 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
14673398 TATATATTCA
*
14673408 TATTTAATATTTTTATTTCATTTT
1 TATTTAATATTTTTATTTAATTTT
14673432 TATTCTAATA-TTTTATTATAATTT
1 TATT-TAATATTTTTATT-TAATTT
14673456 ATATATATAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (24 bp):
TATTTAATATTTTTATTTAATTTT
Found at i:14677283 original size:11 final size:10
Alignment explanation
Indices: 14677267--14677316 Score: 64
Period size: 11 Copynumber: 4.8 Consensus size: 10
14677257 CAGTGGGGGC
14677267 AAAAAAAAAG
1 AAAAAAAAAG
*
14677277 TAAAAAAAGAG
1 -AAAAAAAAAG
14677288 AAAATAAAAAG
1 AAAA-AAAAAG
*
14677299 AAAAAAAAAC
1 AAAAAAAAAG
14677309 AAAAAAAA
1 AAAAAAAA
14677317 CCAAATAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
10 17 0.49
11 18 0.51
ACGTcount: A:0.86, C:0.02, G:0.08, T:0.04
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:14677321 original size:10 final size:10
Alignment explanation
Indices: 14677266--14677326 Score: 50
Period size: 10 Copynumber: 5.8 Consensus size: 10
14677256 TCAGTGGGGG
14677266 CAAAAAAAAA
1 CAAAAAAAAA
* *
14677276 GTAAAAAAAGA
1 -CAAAAAAAAA
*
14677287 GAAAATAAAAA
1 CAAAA-AAAAA
*
14677298 GAAAAAAAAA
1 CAAAAAAAAA
*
14677308 CAAAAAAAAC
1 CAAAAAAAAA
14677318 CAAATAAAA
1 CAAA-AAAA
14677327 GAAAAACCTC
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
10 21 0.50
11 21 0.50
ACGTcount: A:0.82, C:0.07, G:0.07, T:0.05
Consensus pattern (10 bp):
CAAAAAAAAA
Found at i:14677780 original size:7 final size:6
Alignment explanation
Indices: 14677766--14677814 Score: 64
Period size: 6 Copynumber: 7.8 Consensus size: 6
14677756 TAAAAAAATG
14677766 AAAAGA AAAATGAA AAAATGA AAAAGA AAAA-A AAAAGA AAAAGA AAAAG
1 AAAAGA AAAA-G-A AAAA-GA AAAAGA AAAAGA AAAAGA AAAAGA AAAAG
14677815 GAGAGGCCAA
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
5 5 0.12
6 22 0.55
7 6 0.15
8 7 0.17
ACGTcount: A:0.82, C:0.00, G:0.14, T:0.04
Consensus pattern (6 bp):
AAAAGA
Found at i:14677783 original size:21 final size:21
Alignment explanation
Indices: 14677758--14677813 Score: 77
Period size: 20 Copynumber: 2.9 Consensus size: 21
14677748 TACTTCACTA
14677758 AAAAAATG-AAAAGAAAAATG
1 AAAAAATGAAAAAGAAAAATG
14677778 AAAAAATGAAAAAG-AAAA--
1 AAAAAATGAAAAAGAAAAATG
14677796 AAAAAA-GAAAAAGAAAAA
1 AAAAAATGAAAAAGAAAAA
14677814 GGAGAGGCCA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
17 7 0.21
18 10 0.29
20 12 0.35
21 5 0.15
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.05
Consensus pattern (21 bp):
AAAAAATGAAAAAGAAAAATG
Found at i:14678949 original size:44 final size:43
Alignment explanation
Indices: 14678824--14679481 Score: 444
Period size: 44 Copynumber: 15.1 Consensus size: 43
14678814 AGTCATTAAA
* * * **
14678824 GCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATTAAAGAT
1 GCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGAT
* * ** * *
14678867 AACAGGTCCGGTCTTCCTATATTGGTAGGAAGTGGATCGACGAT
1 -GCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAT
* * * *
14678911 GCAGATCTTGTCTTCCCATACTGGTTGCGAAGTAGATCGAAGAAA
1 GCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAG-AT
* * * *
14678956 GCAGATCTTATCTTCATGTATTGG-CGTGAAGTAGATCGAAGAT
1 GCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGAT
* *
14678999 GCAGAT-TCTGCCTTCCTATATTGGTAGGAAGTAGATCGAAGAAA
1 GCAGATCT-TGTCTTCCTATATTGGTAGGAAGTAGATCGAAG-AT
* * * *
14679043 GCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGAT
1 GCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGAT
* * *** * * *
14679086 --AGTTC-TATC-TCC---CGGGGCAAGAAGTAGATCGGAGAT
1 GCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAT
* * * * *
14679122 AGCTGATCCTATCTTCCTATATTGGTAGGAAATGGATCGAAGAT
1 -GCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAT
* * *
14679166 GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAA
1 GCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAG-AT
* * * *
14679211 GCAGATATTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGAT
1 GCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGAT
* * * * *
14679254 AGCTGATCCTATCTTCCTATATTGGTAGGAAATGGATCGAAGAT
1 -GCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAT
* * * *
14679298 GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAA
1 GCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAG-AT
* * *
14679343 GCAGATCTTGTCTTCATGTATTGGCGTA--AAGTAGATCGAAGGT
1 GCAGATCTTGTCTTCCTATATT-G-GTAGGAAGTAGATCGAAGAT
* * *
14679386 AGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGAT
1 -GCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAT
* * * * *
14679430 GCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAATAT
1 GCAGATCTTGTCTTCCTATA-TTGGTAG-GAAGTAGATCGAAGAT
14679475 GGCAGAT
1 -GCAGAT
14679482 TTTACCTCCC
Statistics
Matches: 468, Mismatches: 115, Indels: 60
0.73 0.18 0.09
Matches are distributed among these distances:
36 16 0.03
39 5 0.01
40 7 0.01
41 7 0.01
42 4 0.01
43 117 0.25
44 226 0.48
45 77 0.16
46 7 0.01
47 2 0.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (43 bp):
GCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAT
Found at i:14679276 original size:132 final size:132
Alignment explanation
Indices: 14678821--14679445 Score: 820
Period size: 132 Copynumber: 4.8 Consensus size: 132
14678811 TGAAGTCATT
** * * **
14678821 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATTAAAGATAACAGGTCCGGTCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTATCTTCCTA
* * *
14678886 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATACTGGTTGCGAAGTAGATCGA
66 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGA
14678951 AG
131 AG
* * **
14678953 AAAGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAGAT-GCAGATTCTGCCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTATCTTCCTA
* * *** * *
14679017 TATTGGTAGGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATC-
66 TATTGGTAGGAAGTGGATCGAAG-ATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCG
14679080 AA-
130 AAG
* * * * ** * ** * *
14679082 AGA-TAGTTC-TATC-TCCCG---GGGCAAGAAGTAGATCGGAGATAGCTGATCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTATCTTCCTA
*
14679141 TATTGGTAGGAAATGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGA
66 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGA
14679206 AG
131 AG
* *
14679208 AAAGCAGATATTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCTGATCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTATCTTCCTA
* *
14679273 TATTGGTAGGAAATGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGA
14679338 AG
131 AG
* *
14679340 AAAGCAGATCTTGTCTTCATGTATTGGCGTAAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTATCTTCCTA
*
14679405 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGCCTTCC
66 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCC
14679446 TGTATTTGGC
Statistics
Matches: 426, Mismatches: 56, Indels: 22
0.85 0.11 0.04
Matches are distributed among these distances:
123 40 0.09
124 46 0.11
125 2 0.00
126 5 0.01
127 7 0.02
128 7 0.02
129 5 0.01
130 2 0.00
131 45 0.11
132 267 0.63
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (132 bp):
AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTATCTTCCTA
TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGA
AG
Found at i:14679304 original size:255 final size:261
Alignment explanation
Indices: 14678878--14679445 Score: 758
Period size: 255 Copynumber: 2.2 Consensus size: 261
14678868 ACAGGTCCGG
* *
14678878 TCTTCCTATATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATACTGGTTGCGAAG
1 TCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAG
* *
14678943 TAGATCGAAGAAAGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAGATGCAGATTCT
66 TAGATCGAAGAAAGCAGATATTATCTTCATGTATTGGCGTGAAGTAGATCGAAGATGCAGATCCT
* * ** *
14679008 GCCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGA
131 ACCTTCCTATATTGGTAGGAAATAGATCGAAGAAAGCAGATCTTGTCTTCACATATTGGTCGCGA
* * * * *
14679072 AGTAGAT-C--AAAGATAGTTC-TATC-TCCCG-GGGC-AAGAAGTAGATCGGAGATAGCTGATC
196 AGTAGATCCAGAAAG-CAGATCTTATCTTCACGTGGGCGAA-AAGTAGATCGAAGATAGCAGATC
14679130 CTA
259 CTA
* *
14679133 TCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAG
1 TCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAG
* *
14679198 TAGATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCTGATCC
66 TAGATCGAAGAAAGCAGATATTATCTTCATGTATTGGCGTGAAGTAGATCGAAGAT-GCAGATCC
* * * * *
14679263 TATCTTCCTATATTGGTAGGAAATGGATCGAAG-ATGCAGATCTTGTCTTCCCATATTGGTGGCG
130 TACCTTCCTATATTGGTAGGAAATAGATCGAAGAAAGCAGATCTTGTCTTCACATATTGGTCGCG
* * * * *
14679327 AAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTAAAGTAGATCGAAGGTAGCAGA
195 AAGTAGATC-CAGAAAGCAGATCTTATCTTCACG--TGGGCGAAAAGTAGATCGAAGATAGCAGA
14679392 TCCTA
257 TCCTA
*
14679397 TCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGCCTTCC
1 TCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCC
14679446 TGTATTTGGC
Statistics
Matches: 271, Mismatches: 30, Indels: 15
0.86 0.09 0.05
Matches are distributed among these distances:
255 137 0.51
256 45 0.17
258 1 0.00
259 4 0.01
260 7 0.03
261 3 0.01
264 73 0.27
265 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (261 bp):
TCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAG
TAGATCGAAGAAAGCAGATATTATCTTCATGTATTGGCGTGAAGTAGATCGAAGATGCAGATCCT
ACCTTCCTATATTGGTAGGAAATAGATCGAAGAAAGCAGATCTTGTCTTCACATATTGGTCGCGA
AGTAGATCCAGAAAGCAGATCTTATCTTCACGTGGGCGAAAAGTAGATCGAAGATAGCAGATCCT
A
Found at i:14679586 original size:134 final size:134
Alignment explanation
Indices: 14679424--14680920 Score: 2600
Period size: 134 Copynumber: 11.1 Consensus size: 134
14679414 GAAGTGGATC
*
14679424 GAAGA-TGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAATATGGCAGATTTTACC
1 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACC
14679488 TCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
66 TCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
14679553 GATT
131 GATT
* *
14679557 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGGTCGAAGATGGCGGATTTTACC
1 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACC
14679622 TCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
66 TCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
14679687 GATT
131 GATT
*
14679691 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGACAGATTTTACC
1 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACC
*
14679756 TCCTTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
66 TCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
14679821 GATT
131 GATT
* *
14679825 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGAAGATCGAAGATGGCATATTTTACC
1 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACC
*
14679890 TCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAA
66 TCC--CTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAA
14679955 TAGATT
129 TAGATT
* *
14679961 GAAGATTACAGATCTTGCCTTCCTGTATTTGGCAGCGAAGTAGATCGAAGATGGCAGATTTTACC
1 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACC
14680026 TCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
66 TCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
14680091 GATT
131 GATT
* * *
14680095 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGTAGGTCGAAGATGGCGGATTTTACC
1 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACC
14680160 TCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
66 TCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
14680225 GATT
131 GATT
14680229 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACC
1 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACC
*
14680294 TCCTTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
66 TCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
14680359 GATT
131 GATT
* *
14680363 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGGTCGAAGATGGCGGATTTTACC
1 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACC
* * *
14680428 TCCTTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCCGTATTTGGCAGTGGAATA
66 TCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
14680493 GATT
131 GATT
* *
14680497 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGGTCGAAGATGGCGGATTTTACC
1 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACC
* * *
14680562 TCCATGTGACTACAGTGGAGTACATTGAAGCTGACAACTCTATCTCCCTGTATTTGGCAGTGGAA
66 TCC--CTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAA
14680627 TAGATT
129 TAGATT
* * *
14680633 GAAGATTGCAGATCTTGCCTTCCTGTATTTTGCAGCGAAGCAGGTCGAAGATGGCGGATTTTACC
1 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACC
* *
14680698 TCCTGTGACTACAGTAGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAAT
66 TCC-CTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAAT
14680763 AGATT
130 AGATT
* * *
14680768 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGAGAAGCAAATAGAAGATGGCAGATTTTTAC
1 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGA-TTTTAC
*
14680833 CTCCCTGTGACTACAGTGGAGTACATTGAAGCTGATAACTCTATCTCCCTGTATTTGGCAGTGGA
65 CTCCC--TGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGA
14680898 ATAGATT
128 ATAGATT
* *
14680905 AAAGATTACAGATCTT
1 GAAGATTGCAGATCTT
14680921 ATCTCCCTAA
Statistics
Matches: 1310, Mismatches: 46, Indels: 12
0.96 0.03 0.01
Matches are distributed among these distances:
133 5 0.00
134 844 0.64
135 116 0.09
136 268 0.20
137 77 0.06
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (134 bp):
GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACC
TCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
GATT
Found at i:14680574 original size:538 final size:538
Alignment explanation
Indices: 14679424--14680920 Score: 2694
Period size: 538 Copynumber: 2.8 Consensus size: 538
14679414 GAAGTGGATC
*
14679424 GAAGA-TGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAATATGGCAGATTTTACC
1 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACC
14679488 TCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
66 TCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
14679553 GATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGGTCGAAGATGGCGGATTT
131 GATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGGTCGAAGATGGCGGATTT
14679618 TACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGG
196 TACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGG
*
14679683 AATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGACAG
261 AATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAG
14679748 ATTTTACCTCCTTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCA
326 ATTTTACCTCCTTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCA
14679813 GTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGAAGATCGAAGATG
391 GTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGAAGATCGAAGATG
* *
14679878 GCATATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTAT
456 GCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCCGTAT
14679943 TTGGCAGTGGAATAGATT
521 TTGGCAGTGGAATAGATT
* *
14679961 GAAGATTACAGATCTTGCCTTCCTGTATTTGGCAGCGAAGTAGATCGAAGATGGCAGATTTTACC
1 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACC
14680026 TCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
66 TCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
*
14680091 GATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGTAGGTCGAAGATGGCGGATTT
131 GATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGGTCGAAGATGGCGGATTT
14680156 TACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGG
196 TACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGG
14680221 AATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAG
261 AATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAG
14680286 ATTTTACCTCCTTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCA
326 ATTTTACCTCCTTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCA
* *
14680351 GTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGGTCGAAGATG
391 GTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGAAGATCGAAGATG
* *
14680416 GCGGATTTTACCTCC-T-TGACTACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCCGTAT
456 GCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCCGTAT
14680479 TTGGCAGTGGAATAGATT
521 TTGGCAGTGGAATAGATT
* *
14680497 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGGTCGAAGATGGCGGATTTTACC
1 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACC
* * *
14680562 TCCATGTGACTACAGTGGAGTACATTGAAGCTGACAACTCTATCTCCCTGTATTTGGCAGTGGAA
66 TCC--CTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAA
*
14680627 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTTGCAGCGAAGCAGGTCGAAGATGGCGGAT
129 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGGTCGAAGATGGCGGAT
* *
14680692 TTTACCTCCTGTGACTACAGTAGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAG
194 TTTACCTCC-CTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAG
* * *
14680757 TGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGAGAAGCAAATAGAAGATGG
258 TGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGG
*
14680822 CAGATTTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCTGATAACTCTATCTCCCTGTAT
323 CAGA-TTTTACCT-CCT-TGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTAT
* *
14680887 TTGGCAGTGGAATAGATTAAAGATTACAGATCTT
385 TTGGCAGTGGAATAGATTGAAGATTGCAGATCTT
14680921 ATCTCCCTAA
Statistics
Matches: 925, Mismatches: 28, Indels: 9
0.96 0.03 0.01
Matches are distributed among these distances:
536 127 0.14
537 6 0.01
538 584 0.63
539 119 0.13
540 8 0.01
541 3 0.00
542 78 0.08
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (538 bp):
GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACC
TCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
GATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGGTCGAAGATGGCGGATTT
TACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGG
AATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAG
ATTTTACCTCCTTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCA
GTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGAAGATCGAAGATG
GCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCCGTAT
TTGGCAGTGGAATAGATT
Found at i:14680927 original size:46 final size:46
Alignment explanation
Indices: 14679526--14680928 Score: 186
Period size: 46 Copynumber: 31.2 Consensus size: 46
14679516 CCGATAACTC
*
14679526 TATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTG-CAGATCT
1 TATCTCCCTGTATTTGGCAGTGGAATAGATTAAAGA-TGACAGATCT
** * * * * ** * * *
14679572 TGCCTTCCTGTATTTGGCAG-CGAAGCAGGTCGAAGATGGCGGATTT
1 TATCTCCCTGTATTTGGCAGTGGAA-TAGATTAAAGATGACAGATCT
* * * * * * ** *
14679618 TACCTCCCTG-A-CT-ACAGTGGAGTACATTGAAGCCGATA-A-CT
1 TATCTCCCTGTATTTGGCAGTGGAATAGATTAAAGATGACAGATCT
*
14679659 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTG-CAGATCT
1 -TATCTCCCTGTATTTGGCAGTGGAATAGATTAAAGA-TGACAGATCT
** * * * ** *
14679706 TGCCTTCCTGTATTTGGCAG-CGAAGCAGATCGAAGATGACAGATTT
1 TATCTCCCTGTATTTGGCAGTGGAA-TAGATTAAAGATGACAGATCT
* * * * * * * ** *
14679752 TACCTCCTTG-A-CT-ACAGTGGAGTACATTGAAGCCGATA-A-CT
1 TATCTCCCTGTATTTGGCAGTGGAATAGATTAAAGATGACAGATCT
*
14679793 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTG-CAGATCT
1 -TATCTCCCTGTATTTGGCAGTGGAATAGATTAAAGA-TGACAGATCT
** * * * ** * * *
14679840 TGCCTTCCTGTATTTGGCAG-CGAAGAAGATCGAAGATGGCATATTT
1 TATCTCCCTGTATTTGGCAGTGGAA-TAGATTAAAGATGACAGATCT
* * * * * * * ** *
14679886 TACCTCCATGTGA-CT-ACAGTGGAGTACATTGAAGCCGATA-A-CT
1 TATCTCCCTGT-ATTTGGCAGTGGAATAGATTAAAGATGACAGATCT
* *
14679929 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTACAGATCT
1 -TATCTCCCTGTATTTGGCAGTGGAATAGATTAAAGATGACAGATCT
** * * ** * *
14679976 TGCCTTCCTGTATTTGGCAG-CGAAGTAGATCGAAGATGGCAGATTT
1 TATCTCCCTGTATTTGGCAGTGGAA-TAGATTAAAGATGACAGATCT
* * * * * * ** *
14680022 TACCTCCCTG-A-CT-ACAGTGGAGTACATTGAAGCCGATA-A-CT
1 TATCTCCCTGTATTTGGCAGTGGAATAGATTAAAGATGACAGATCT
*
14680063 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTG-CAGATCT
1 -TATCTCCCTGTATTTGGCAGTGGAATAGATTAAAGA-TGACAGATCT
** * * * ** * * *
14680110 TGCCTTCCTGTATTTGGCAG-CGAAGTAGGTCGAAGATGGCGGATTT
1 TATCTCCCTGTATTTGGCAGTGGAA-TAGATTAAAGATGACAGATCT
* * * * * * ** *
14680156 TACCTCCCTG-A-CT-ACAGTGGAGTACATTGAAGCCGATA-A-CT
1 TATCTCCCTGTATTTGGCAGTGGAATAGATTAAAGATGACAGATCT
*
14680197 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTG-CAGATCT
1 -TATCTCCCTGTATTTGGCAGTGGAATAGATTAAAGA-TGACAGATCT
** * * * ** * *
14680244 TGCCTTCCTGTATTTGGCAG-CGAAGCAGATCGAAGATGGCAGATTT
1 TATCTCCCTGTATTTGGCAGTGGAA-TAGATTAAAGATGACAGATCT
* * * * * * * ** *
14680290 TACCTCCTTG-A-CT-ACAGTGGAGTACATTGAAGCCGATA-A-CT
1 TATCTCCCTGTATTTGGCAGTGGAATAGATTAAAGATGACAGATCT
*
14680331 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTG-CAGATCT
1 -TATCTCCCTGTATTTGGCAGTGGAATAGATTAAAGA-TGACAGATCT
** * * * * ** * * *
14680378 TGCCTTCCTGTATTTGGCAG-CGAAGCAGGTCGAAGATGGCGGATTT
1 TATCTCCCTGTATTTGGCAGTGGAA-TAGATTAAAGATGACAGATCT
* * * * * * * ** *
14680424 TACCTCCTTG-A-CT-ACAGTGGAGTACATTGAAGCCGATA-AT-T
1 TATCTCCCTGTATTTGGCAGTGGAATAGATTAAAGATGACAGATCT
* *
14680465 CTATCTCCCCGTATTTGGCAGTGGAATAGATTGAAGATTG-CAGATCT
1 -TATCTCCCTGTATTTGGCAGTGGAATAGATTAAAGA-TGACAGATCT
** * * * * ** * * *
14680512 TGCCTTCCTGTATTTGGCAG-CGAAGCAGGTCGAAGATGGCGGATTT
1 TATCTCCCTGTATTTGGCAGTGGAA-TAGATTAAAGATGACAGATCT
* * * * * * * *
14680558 TACCTCCATGTGA-CT-ACAGTGGAGTACATTGAAGCTGACA-A-CT
1 TATCTCCCTGT-ATTTGGCAGTGGAATAGATTAAAGATGACAGATCT
*
14680601 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTG-CAGATCT
1 -TATCTCCCTGTATTTGGCAGTGGAATAGATTAAAGA-TGACAGATCT
** * * * * * ** * * *
14680648 TGCCTTCCTGTATTTTGCAG-CGAAGCAGGTCGAAGATGGCGGATTT
1 TATCTCCCTGTATTTGGCAGTGGAA-TAGATTAAAGATGACAGATCT
* * * * * * * ** *
14680694 TACCT-CCTGTGA-CT-ACAGTAGAGTACATTGAAGCCGATA-A-CT
1 TATCTCCCTGT-ATTTGGCAGTGGAATAGATTAAAGATGACAGATCT
*
14680736 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTG-CAGATCT
1 -TATCTCCCTGTATTTGGCAGTGGAATAGATTAAAGA-TGACAGATCT
** * * * * * *
14680783 TGCCTTCCTGTATTTGGCAG-AGAAGCA-AATAGAAGATGGCAGATTTT
1 TATCTCCCTGTATTTGGCAGTGGAA-TAGATTA-AAGATGACAGA-TCT
* * * * * * * *
14680830 TACCTCCCTGTGA-CT-ACAGTGGAGTACATTGAAGCTGATA-A-CT
1 TATCTCCCTGT-ATTTGGCAGTGGAATAGATTAAAGATGACAGATCT
*
14680873 CTATCTCCCTGTATTTGGCAGTGGAATAGATTAAAGATTACAGATCT
1 -TATCTCCCTGTATTTGGCAGTGGAATAGATTAAAGATGACAGATCT
14680920 TATCTCCCT
1 TATCTCCCT
14680929 AAGCAATAGT
Statistics
Matches: 938, Mismatches: 318, Indels: 202
0.64 0.22 0.14
Matches are distributed among these distances:
41 6 0.01
42 58 0.06
43 87 0.09
44 73 0.08
45 261 0.28
46 415 0.44
47 37 0.04
48 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (46 bp):
TATCTCCCTGTATTTGGCAGTGGAATAGATTAAAGATGACAGATCT
Found at i:14681041 original size:672 final size:668
Alignment explanation
Indices: 14679424--14680996 Score: 2603
Period size: 672 Copynumber: 2.3 Consensus size: 668
14679414 GAAGTGGATC
*
14679424 GAAGA-TGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAATATGGCAGATTTTACC
1 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACC
14679488 TCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
66 TCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
14679553 GATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGGTCGAAGATGGCGGATTT
131 GATTGAAGATTGCAGATCTTGCCTTCCTGTATTT-G-AGCGAAGCAGGTCGAAGATGGCGGATTT
14679618 TACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGG
194 TACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTA--TGGCAGTGG
14679683 AATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGACAG
257 AATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGACAG
*
14679748 ATTTTACCTCCTTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCA
322 ATTTTACCTCCTTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCCGTATTTGGCA
14679813 GTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGAAGATCGAAGATG
387 GTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGAAGATCGAAGATG
* *
14679878 GCATATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTAT
452 GCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGACAACTCTATCTCCCTGTAT
*
14679943 TTGGCAGTGGAATAGATTGAAGATTACAGATCTTGCCTTCCTGTATTTGGCAGCGAAGTAGATCG
517 TTGGCAGTGGAATAGATTGAAGATTACAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCG
*
14680008 AAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCT
582 AAGATGGCAGATTTTACCTCCCTGACTACAGTAGAGTACATTGAAGCCGATAACTCTATCTCCCT
14680073 GTATTTGGCAGTGGAATAGATT
647 GTATTTGGCAGTGGAATAGATT
* * *
14680095 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGTAGGTCGAAGATGGCGGATTTTACC
1 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACC
14680160 TCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
66 TCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
* *
14680225 GATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTT
131 GATTGAAGATTGCAGATCTTGCCTTCCTGTATTT-G-AGCGAAGCAGGTCGAAGATGGCGGATTT
*
14680290 TACCTCCTTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGG
194 TACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTA--TGGCAGTGG
* * *
14680355 AATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGGTCGAAGATGGCGG
257 AATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGACAG
*
14680420 ATTTTACCTCCTTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCCGTATTTGGCA
322 ATTTTACCTCCTTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCCGTATTTGGCA
* *
14680485 GTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGGTCGAAGATG
387 GTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGAAGATCGAAGATG
* *
14680550 GCGGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCTGACAACTCTATCTCCCTGTAT
452 GCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGACAACTCTATCTCCCTGTAT
* * *
14680615 TTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTTGCAGCGAAGCAGGTCG
517 TTGGCAGTGGAATAGATTGAAGATTACAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCG
* *
14680680 AAGATGGCGGATTTTACCTCCTGTGACTACAGTAGAGTACATTGAAGCCGATAACTCTATCTCCC
582 AAGATGGCAGATTTTACCTCC-CTGACTACAGTAGAGTACATTGAAGCCGATAACTCTATCTCCC
14680745 TGTATTTGGCAGTGGAATAGATT
646 TGTATTTGGCAGTGGAATAGATT
* * *
14680768 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGAGAAGCAAATAGAAGATGGCAGATTTTTAC
1 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGA-TTTTAC
*
14680833 CTCCCTGTGACTACAGTGGAGTACATTGAAGCTGATAACTCTATCTCCCTGTATTTGGCAGTGGA
65 CTCCC--TGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGA
* * ** * * * * * * * * *
14680898 ATAGATTAAAGATTACAGATCTTATCTCCCTAAGCA-AT-AGTGGAGTAGGTTGAAGACGACGGA
128 ATAGATTGAAGATTGCAGATCTTGCCTTCCT--GTATTTGAGCGAAGCAGGTCGAAGATGGCGGA
* *
14680961 TTTTACCTCCCTGATTACGGTGGAGTACATTGAAGC
191 TTTTACCTCCCTGACTACAGTGGAGTACATTGAAGC
14680997 TGGTAGTTCT
Statistics
Matches: 845, Mismatches: 50, Indels: 11
0.93 0.06 0.01
Matches are distributed among these distances:
671 5 0.01
672 577 0.68
673 116 0.14
674 61 0.07
676 83 0.10
677 1 0.00
678 2 0.00
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (668 bp):
GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACC
TCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
GATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGAGCGAAGCAGGTCGAAGATGGCGGATTTTA
CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATGGCAGTGGAATA
GATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGACAGATTT
TACCTCCTTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCCGTATTTGGCAGTGG
AATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGAAGATCGAAGATGGCAG
ATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGACAACTCTATCTCCCTGTATTTGG
CAGTGGAATAGATTGAAGATTACAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGA
TGGCAGATTTTACCTCCCTGACTACAGTAGAGTACATTGAAGCCGATAACTCTATCTCCCTGTAT
TTGGCAGTGGAATAGATT
Found at i:14681100 original size:40 final size:40
Alignment explanation
Indices: 14681046--14681193 Score: 190
Period size: 40 Copynumber: 3.6 Consensus size: 40
14681036 AAGATTACAA
* * *
14681046 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATTAAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAG
* * *
14681086 TCTTATCTCCCTAAGCAGTAGTGGAACAGA-CAAAACCACAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-ACATCA-AG
* *
14681127 ATCTTATTTCCCTAAGCAATAGTGGAGCAGATCACATCAAG
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAG
14681168 TCTTATCTCCCTAAGCAGTAGTGGAG
1 TCTTATCTCCCTAAGCAGTAGTGGAG
14681194 TAGACGAAGA
Statistics
Matches: 91, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 54 0.59
41 4 0.04
42 31 0.34
43 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (40 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAG
Found at i:14682158 original size:13 final size:11
Alignment explanation
Indices: 14682138--14682172 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
14682128 TCCTTCCCCC
14682138 CCCTCTCTC-T
1 CCCTCTCTCTT
14682148 CCCTTCTCTCTT
1 CCC-TCTCTCTT
14682160 CCCTCTCTCTT
1 CCCTCTCTCTT
14682171 CC
1 CC
14682173 TTTTTTTCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 3 0.13
11 16 0.70
12 4 0.17
ACGTcount: A:0.00, C:0.57, G:0.00, T:0.43
Consensus pattern (11 bp):
CCCTCTCTCTT
Found at i:14682663 original size:3 final size:3
Alignment explanation
Indices: 14682639--14682706 Score: 57
Period size: 3 Copynumber: 22.3 Consensus size: 3
14682629 AATATCCTTG
* * * *
14682639 TTA TTT TTA -TA TTA TTA GTA TTA TTA GTA TTA CTA TTA TTA TTA TGTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* *
14682687 TTA GTA TATA TTT TTA TTA T
1 TTA TTA T-TA TTA TTA TTA T
14682707 GTACGCGTAT
Statistics
Matches: 50, Mismatches: 12, Indels: 6
0.74 0.18 0.09
Matches are distributed among these distances:
2 2 0.04
3 42 0.84
4 6 0.12
ACGTcount: A:0.31, C:0.01, G:0.06, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:14682716 original size:23 final size:23
Alignment explanation
Indices: 14682646--14682720 Score: 62
Period size: 23 Copynumber: 3.2 Consensus size: 23
14682636 TTGTTATTTT
* **
14682646 TATATTATTAGTAT-TATTAGTA
1 TATATTATTATTATGTACGAGTA
**
14682668 TTACTATTATTATTATGTATTAGTA
1 -TA-TATTATTATTATGTACGAGTA
* *
14682693 TATATTTTTATTATGTACGCGTA
1 TATATTATTATTATGTACGAGTA
14682716 TATAT
1 TATAT
14682721 ATATATATAT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
23 24 0.53
24 13 0.29
25 8 0.18
ACGTcount: A:0.32, C:0.04, G:0.09, T:0.55
Consensus pattern (23 bp):
TATATTATTATTATGTACGAGTA
Found at i:14682781 original size:25 final size:24
Alignment explanation
Indices: 14682734--14682781 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
14682724 TATATATTCA
*
14682734 TATTTAATATTTTTATTTCATTTT
1 TATTTAATATTTTTATTTAATTTT
14682758 TATTCTAATA-TTTTATTATAATTT
1 TATT-TAATATTTTTATT-TAATTT
14682782 ATATATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (24 bp):
TATTTAATATTTTTATTTAATTTT
Found at i:14687826 original size:34 final size:34
Alignment explanation
Indices: 14687787--14687853 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
14687777 AACTTGTTTA
14687787 GAAGCCTTACTTTGTAAACAATACATAGTTATTC
1 GAAGCCTTACTTTGTAAACAATACATAGTTATTC
14687821 GAAGCCTTACTTTGTAAACAATACATAGTTATT
1 GAAGCCTTACTTTGTAAACAATACATAGTTATT
14687854 ATTTCTTTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (34 bp):
GAAGCCTTACTTTGTAAACAATACATAGTTATTC
Found at i:14690006 original size:28 final size:28
Alignment explanation
Indices: 14689952--14690006 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
14689942 TTTGTCTACA
* *
14689952 CTTGGATGTCGTTTTCCCAAGTTGCTTT
1 CTTGGATGTCATTTTCCCAAGTAGCTTT
* *
14689980 CTTGGATGTCATTTTCTCACGTAGCTT
1 CTTGGATGTCATTTTCCCAAGTAGCTT
14690007 CCTTTTTTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.13, C:0.22, G:0.20, T:0.45
Consensus pattern (28 bp):
CTTGGATGTCATTTTCCCAAGTAGCTTT
Found at i:14690042 original size:71 final size:71
Alignment explanation
Indices: 14689926--14690081 Score: 269
Period size: 71 Copynumber: 2.2 Consensus size: 71
14689916 ATGGTTGCTT
* *
14689926 CCACGTTGCTTTC-TTTTTTGTCTACACTTGGATGTCGTTTTCCCAAGTTGCTTTCTTGGATGTC
1 CCACGTAGCTTCCTTTTTTTGTCTACACTTGGATGTCGTTTTCCCAAGTTGCTTTCTTGGATGTC
14689990 ATTTTC
66 ATTTTC
* *
14689996 TCACGTAGCTTCCTTTTTTTGTCTACATTTGGATGTCGTTTTCCCAAGTTGCTTTCTTGGATGTC
1 CCACGTAGCTTCCTTTTTTTGTCTACACTTGGATGTCGTTTTCCCAAGTTGCTTTCTTGGATGTC
14690061 ATTTTC
66 ATTTTC
14690067 CCACGTAGCTTCCTT
1 CCACGTAGCTTCCTT
14690082 GATATTTTAA
Statistics
Matches: 80, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
70 10 0.12
71 70 0.88
ACGTcount: A:0.12, C:0.24, G:0.17, T:0.47
Consensus pattern (71 bp):
CCACGTAGCTTCCTTTTTTTGTCTACACTTGGATGTCGTTTTCCCAAGTTGCTTTCTTGGATGTC
ATTTTC
Found at i:14690077 original size:28 final size:28
Alignment explanation
Indices: 14690024--14690082 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
14690014 TTGTCTACAT
* * *
14690024 TTGGATGTCGTTTTCCCAAGTTGCTTTC
1 TTGGATGTCATTTTCCCAAGTAGCTTCC
*
14690052 TTGGATGTCATTTTCCCACGTAGCTTCC
1 TTGGATGTCATTTTCCCAAGTAGCTTCC
14690080 TTG
1 TTG
14690083 ATATTTTAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.12, C:0.24, G:0.20, T:0.44
Consensus pattern (28 bp):
TTGGATGTCATTTTCCCAAGTAGCTTCC
Found at i:14690826 original size:16 final size:17
Alignment explanation
Indices: 14690796--14690827 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
14690786 TTTAAATCGT
14690796 TTGTAAAAAACATATAC
1 TTGTAAAAAACATATAC
14690813 TTGTAAAAAA-ATATA
1 TTGTAAAAAACATATA
14690828 TTCTGAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.31
Consensus pattern (17 bp):
TTGTAAAAAACATATAC
Found at i:14701111 original size:20 final size:20
Alignment explanation
Indices: 14701070--14701111 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
14701060 TCATAACATA
* *
14701070 TCTCTCATTCTATATTCTTT
1 TCTCTCATTCCATATTCCTT
14701090 TCTCTCATTCCAT-TTCCCTT
1 TCTCTCATTCCATATT-CCTT
14701110 TC
1 TC
14701112 CTTTTCCCTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 2 0.11
20 17 0.89
ACGTcount: A:0.12, C:0.33, G:0.00, T:0.55
Consensus pattern (20 bp):
TCTCTCATTCCATATTCCTT
Found at i:14705219 original size:12 final size:11
Alignment explanation
Indices: 14705196--14705238 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
14705186 TTACAATAAC
14705196 AAACAA-ATTAA
1 AAACAATATT-A
14705207 AAACAATATTA
1 AAACAATATTA
*
14705218 AAACAATTCTTA
1 AAACAA-TATTA
14705230 AAACAATAT
1 AAACAATAT
14705239 ACAGATTGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 15 0.54
12 13 0.46
ACGTcount: A:0.63, C:0.12, G:0.00, T:0.26
Consensus pattern (11 bp):
AAACAATATTA
Found at i:14705317 original size:22 final size:22
Alignment explanation
Indices: 14705272--14705318 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
14705262 GTGGTTATAT
*
14705272 TAAGATAGTAACAACTAACAAG
1 TAAGATAGTAACAACTAAAAAG
*
14705294 TAAGA-AGTTACAACTAAAATAG
1 TAAGATAGTAACAACTAAAA-AG
14705316 TAA
1 TAA
14705319 CAAAACTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 12 0.55
22 10 0.45
ACGTcount: A:0.55, C:0.11, G:0.13, T:0.21
Consensus pattern (22 bp):
TAAGATAGTAACAACTAAAAAG
Found at i:14709651 original size:44 final size:45
Alignment explanation
Indices: 14709588--14709700 Score: 165
Period size: 44 Copynumber: 2.5 Consensus size: 45
14709578 TACTCCAGAA
*
14709588 ATGAGTAAGACCATAGTTGAAAGATGCTATGGCATC-TGATAAAG
1 ATGAGTAAGACCATAGTTGAAAGATGCTATGGCATCATAATAAAG
* * * *
14709632 ATGAGTAAGACTATAGTTGAAAGATGCTATGGCGTCATAATACAT
1 ATGAGTAAGACCATAGTTGAAAGATGCTATGGCATCATAATAAAG
*
14709677 ATGAGTAAGGCCATAGTTGAAAGA
1 ATGAGTAAGACCATAGTTGAAAGA
14709701 AACTATGACA
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
44 34 0.56
45 27 0.44
ACGTcount: A:0.39, C:0.11, G:0.25, T:0.26
Consensus pattern (45 bp):
ATGAGTAAGACCATAGTTGAAAGATGCTATGGCATCATAATAAAG
Found at i:14711123 original size:102 final size:102
Alignment explanation
Indices: 14710947--14711152 Score: 385
Period size: 102 Copynumber: 2.0 Consensus size: 102
14710937 TTGAGAACAT
14710947 GATTCAAAGGTGTTTGCCATATATTTAGGTTTTTGTATCATTTGGAACCTAGACTCGAAGAGTGG
1 GATTCAAAGGTGTTTGCCATATATTTAGGTTTTTGTATCATTTGGAACCTAGACTCGAAGAGTGG
14711012 GTCGGGTACAAGTGTTACAAATCCTTTCCAAATAAAA
66 GTCGGGTACAAGTGTTACAAATCCTTTCCAAATAAAA
*
14711049 GATTCAAAGGTGTTTGCCATATATTTAGGTTTTTGTATCATTTGGAACCTAGACTCGGAGAGTGG
1 GATTCAAAGGTGTTTGCCATATATTTAGGTTTTTGTATCATTTGGAACCTAGACTCGAAGAGTGG
* *
14711114 GTTGGGTACAAGTGTTACAAATTCTTTCCAAATAAAA
66 GTCGGGTACAAGTGTTACAAATCCTTTCCAAATAAAA
14711151 GA
1 GA
14711153 AGGTTTGTTA
Statistics
Matches: 101, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
102 101 1.00
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34
Consensus pattern (102 bp):
GATTCAAAGGTGTTTGCCATATATTTAGGTTTTTGTATCATTTGGAACCTAGACTCGAAGAGTGG
GTCGGGTACAAGTGTTACAAATCCTTTCCAAATAAAA
Found at i:14714092 original size:16 final size:18
Alignment explanation
Indices: 14714065--14714097 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
14714055 TAGAATTGAG
14714065 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
14714082 TTGAG-AAATTAATTTA
1 TTGAGAAAATTAATTTA
14714098 TTTAATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.42
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:14720971 original size:3 final size:3
Alignment explanation
Indices: 14720963--14720993 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
14720953 TAATATCTCC
14720963 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
14720994 GTTTTTTTAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:14721346 original size:40 final size:40
Alignment explanation
Indices: 14721301--14721380 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
14721291 AAATATTATG
14721301 ACTATATACTATTATTTACATTAAGATTTTTTTTTACTTA
1 ACTATATACTATTATTTACATTAAGATTTTTTTTTACTTA
14721341 ACTATATACTATTATTTACATTAAGATTTTTTTTTACTTA
1 ACTATATACTATTATTTACATTAAGATTTTTTTTTACTTA
14721381 TAAATCAAAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.33, C:0.10, G:0.03, T:0.55
Consensus pattern (40 bp):
ACTATATACTATTATTTACATTAAGATTTTTTTTTACTTA
Found at i:14727201 original size:14 final size:15
Alignment explanation
Indices: 14727172--14727209 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
14727162 TTTGAGTAAA
14727172 AAAAAGATGAAAAATG
1 AAAAA-ATGAAAAATG
14727188 AAAAAATG-AAAATG
1 AAAAAATGAAAAATG
*
14727202 TAAAAATG
1 AAAAAATG
14727210 GAGAAGCTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 13 0.62
15 3 0.14
16 5 0.24
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (15 bp):
AAAAAATGAAAAATG
Found at i:14728680 original size:88 final size:86
Alignment explanation
Indices: 14728450--14728717 Score: 419
Period size: 86 Copynumber: 3.1 Consensus size: 86
14728440 AGATCAGTGA
*
14728450 AGATCGAAAACAAACCCTGCCTCCCTCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATCTTGCC
1 AGATCGAAAACAAACCTTGCCTCCCTCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATCTTGCC
14728515 TTCCTGCATCGACAGTGAAGC
66 TTCCTGCATCGACAGTGAAGC
* * * **
14728536 AGATCGAAAACAAACCTTGCCTCCATCGGTTGTAGTGGAACTGGTTGAAGATAGCAGATTTTGTT
1 AGATCGAAAACAAACCTTGCCTCCCTCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATCTTGCC
*
14728601 TTCTTGCATCGACAGTGAAGC
66 TTCCTGCATCGACAGTGAAGC
* *
14728622 AGATCGAAGACACAAACCTTGCCTCCCTCGGTTGTAGTGGAGTTGGTTGAGGATAGCAGATCTTG
1 AGATCGAA-A-ACAAACCTTGCCTCCCTCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATCTTG
* *
14728687 CCTTCCTGCATCGACAGTTAAGT
64 CCTTCCTGCATCGACAGTGAAGC
14728710 AGATCGAA
1 AGATCGAA
14728718 TACGGCTAAT
Statistics
Matches: 163, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
86 87 0.53
87 1 0.01
88 75 0.46
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.26
Consensus pattern (86 bp):
AGATCGAAAACAAACCTTGCCTCCCTCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATCTTGCC
TTCCTGCATCGACAGTGAAGC
Found at i:14729118 original size:44 final size:44
Alignment explanation
Indices: 14728923--14729315 Score: 188
Period size: 44 Copynumber: 9.1 Consensus size: 44
14728913 TAGAGAAGCG
* *
14728923 GATTGAAGTAATAGATCTTATCTCTCTGAAGTTGCAGT--AG-A
1 GATTGAAGTAATAAATCTTATCTCCCTGAAGTTGCAGTGGAGCA
* * * * * ** *
14728964 G-TGGATCGCAACAAGTCTTATC-CCTCTGAAGTCACAGTGGGGCA
1 GATTGA-AGTAATAAATCTTATCTCC-CTGAAGTTGCAGTGGAGCA
* * * *
14729008 GACTGAAG-AAGAAAATATTATCTCCCTGAGGTTGCAGTGGAGCA
1 GATTGAAGTAA-TAAATCTTATCTCCCTGAAGTTGCAGTGGAGCA
* * * *
14729052 GATTGAAGTCGAT-AATCCTATCTCCCTGAAGTTGTAGTGGAGCG
1 GATTGAAGT-AATAAATCTTATCTCCCTGAAGTTGCAGTGGAGCA
* * ** * * **
14729096 GATTAAAGTAATAAATCTTATCTCTCTGACA-TTATACTAGAGTG
1 GATTGAAGTAATAAATCTTATCTCCCTGA-AGTTGCAGTGGAGCA
* * * ** * *
14729140 GATCGCA-T--CAGGTCTTATTTCCCTGAAG-T-CAAGGTGGGGCA
1 GATTGAAGTAATAAATCTTATCTCCCTGAAGTTGC-A-GTGGAGCA
* *
14729181 GACTGAAG-AAGCAAATCTTATCTCCCT-AAGGTTGCAGTGGAGCA
1 GATTGAAGTAA-TAAATCTTATCTCCCTGAA-GTTGCAGTGGAGCA
* * * *
14729225 GATTGAAGTCGAT-AATCCTATCTCCCTGAAGTTGTAGTGGAGCG
1 GATTGAAGT-AATAAATCTTATCTCCCTGAAGTTGCAGTGGAGCA
* * * * *
14729269 GATTAAAGTAATAGATTTTATCTCTCTGAAGTTGCAGTAGAGCA
1 GATTGAAGTAATAAATCTTATCTCCCTGAAGTTGCAGTGGAGCA
14729313 GAT
1 GAT
14729316 CGCATCAAGT
Statistics
Matches: 254, Mismatches: 72, Indels: 49
0.68 0.19 0.13
Matches are distributed among these distances:
40 7 0.03
41 43 0.17
43 10 0.04
44 182 0.72
45 9 0.04
46 3 0.01
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (44 bp):
GATTGAAGTAATAAATCTTATCTCCCTGAAGTTGCAGTGGAGCA
Found at i:14729168 original size:173 final size:173
Alignment explanation
Indices: 14728875--14729328 Score: 662
Period size: 173 Copynumber: 2.6 Consensus size: 173
14728865 AGTGTAAGGA
* * * * * *
14728875 AGCAGATTGAAGCCGATAATCCTATCTTCCTTAAGTTGTAGAGAAGCGGATTGAAGTAATAGATC
1 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
* *
14728940 TTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCAACAAGTCTTATCCCTCTGAAGTCACA-GTGG
66 TTATCTCTCTGAAGTTACACTAGAGTGGATCGCAACAAGTCTTATCCCTCTGAAGTCA-AGGTGG
*
14729004 GGCAGACTGAAGAAGAAAATATTATCTCCCTGAGGTTGCAGTGG
130 GGCAGACTGAAGAAGAAAATATTATCTCCCTAAGGTTGCAGTGG
*
14729048 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAAATC
1 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
* * * *
14729113 TTATCTCTCTGACA-TTATACTAGAGTGGATCGCATCAGGTCTTATTTCC-CTGAAGTCAAGGTG
66 TTATCTCTCTGA-AGTTACACTAGAGTGGATCGCAACAAGTCTTA-TCCCTCTGAAGTCAAGGTG
* *
14729176 GGGCAGACTGAAGAAGCAAATCTTATCTCCCTAAGGTTGCAGTGG
129 GGGCAGACTGAAGAAGAAAATATTATCTCCCTAAGGTTGCAGTGG
*
14729221 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATT
1 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
* * ** *
14729286 TTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCAAGTCTT
66 TTATCTCTCTGAAGTTACACTAGAGTGGATCGCAACAAGTCTT
14729329 GCCAACTAAA
Statistics
Matches: 253, Mismatches: 24, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
172 2 0.01
173 247 0.98
174 4 0.02
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.29
Consensus pattern (173 bp):
AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
TTATCTCTCTGAAGTTACACTAGAGTGGATCGCAACAAGTCTTATCCCTCTGAAGTCAAGGTGGG
GCAGACTGAAGAAGAAAATATTATCTCCCTAAGGTTGCAGTGG
Found at i:14730798 original size:3 final size:3
Alignment explanation
Indices: 14730790--14730846 Score: 96
Period size: 3 Copynumber: 19.0 Consensus size: 3
14730780 TAATATCTCC
*
14730790 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ACT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
14730838 ACT ATT ATT
1 ATT ATT ATT
14730847 TTTTTACTTA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:14735463 original size:18 final size:18
Alignment explanation
Indices: 14735440--14735481 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
14735430 ATTAAATGAT
14735440 TTAATAATAATCAATTTA
1 TTAATAATAATCAATTTA
14735458 TTAATAATAATCAATTTA
1 TTAATAATAATCAATTTA
14735476 TATAAT
1 T-TAAT
14735482 TTAGCTAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (18 bp):
TTAATAATAATCAATTTA
Found at i:14735793 original size:2 final size:2
Alignment explanation
Indices: 14735786--14735817 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
14735776 TGACAACCGA
*
14735786 AT AT AT AT AT AT AT AT AT AA AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14735818 TTCATTATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:14736020 original size:41 final size:41
Alignment explanation
Indices: 14735962--14736066 Score: 97
Period size: 41 Copynumber: 2.6 Consensus size: 41
14735952 TGTAATAATG
* *
14735962 CACCGGCATAAA-ACCTGCTAGGCTCA-AGCCTCATAAAAACT
1 CACCGGCA-AAAGGCCTGCTAGGCTCATAGCCTCAT-AAAACA
** * * * * *
14736003 CACCGGCACTAGGCCTGCAAGGCTTATAGCCTGATATATCA
1 CACCGGCAAAAGGCCTGCTAGGCTCATAGCCTCATAAAACA
14736044 CACCGGCAAAAGGCCTGCTAGGC
1 CACCGGCAAAAGGCCTGCTAGGC
14736067 ACGAAGCTCG
Statistics
Matches: 50, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
40 1 0.02
41 42 0.84
42 7 0.14
ACGTcount: A:0.30, C:0.31, G:0.21, T:0.17
Consensus pattern (41 bp):
CACCGGCAAAAGGCCTGCTAGGCTCATAGCCTCATAAAACA
Found at i:14742304 original size:52 final size:53
Alignment explanation
Indices: 14742195--14742308 Score: 140
Period size: 52 Copynumber: 2.2 Consensus size: 53
14742185 GTGATTTACT
* * **
14742195 TTATTTAGTAGGCCTTGAGTCGGTGTATATTTTTAGCAAGATTTGAGCTGGTGA
1 TTATTTAGAAGGCCTTAAGTCGGTGTATA-TTTTAGCAAGATTTGAGCCAGTGA
* * * *
14742249 TTATTTAGAAGGCTTTAAGTCGGTGTGTA-TTTAGCAGGCTTTGAGCCAGTGA
1 TTATTTAGAAGGCCTTAAGTCGGTGTATATTTTAGCAAGATTTGAGCCAGTGA
14742301 TTATTTAG
1 TTATTTAG
14742309 CAGGTACCAC
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
52 27 0.52
54 25 0.48
ACGTcount: A:0.23, C:0.10, G:0.27, T:0.40
Consensus pattern (53 bp):
TTATTTAGAAGGCCTTAAGTCGGTGTATATTTTAGCAAGATTTGAGCCAGTGA
Found at i:14742309 original size:26 final size:26
Alignment explanation
Indices: 14742195--14742312 Score: 103
Period size: 26 Copynumber: 4.5 Consensus size: 26
14742185 GTGATTTACT
* * *
14742195 TTATTTAGTAGGCCTTGAGTCGGTGTA
1 TTATTTAGCAGGCTTTGAGCCGGTG-A
* * * *
14742222 TATTTTTAGCAAGATTTGAGCTGGTGA
1 T-TATTTAGCAGGCTTTGAGCCGGTGA
* * *
14742249 TTATTTAGAAGGCTTTAAGTCGGTG-
1 TTATTTAGCAGGCTTTGAGCCGGTGA
*
14742274 TGTATTTAGCAGGCTTTGAGCCAGTGA
1 T-TATTTAGCAGGCTTTGAGCCGGTGA
14742301 TTATTTAGCAGG
1 TTATTTAGCAGG
14742313 TACCACATAT
Statistics
Matches: 70, Mismatches: 18, Indels: 7
0.74 0.19 0.07
Matches are distributed among these distances:
25 1 0.01
26 48 0.69
27 4 0.06
28 17 0.24
ACGTcount: A:0.23, C:0.10, G:0.28, T:0.39
Consensus pattern (26 bp):
TTATTTAGCAGGCTTTGAGCCGGTGA
Found at i:14742982 original size:101 final size:101
Alignment explanation
Indices: 14742807--14743013 Score: 405
Period size: 101 Copynumber: 2.0 Consensus size: 101
14742797 ATATAGGATG
14742807 ATGTTATGTTAAGGTTGTTACTGTCTTGGTATTTTGGTTGTAAATATCTTTGGGTGTAAAGTTGG
1 ATGTTATGTTAAGGTTGTTACTGTCTTGGTATTTTGGTTGTAAATATCTTTGGGTGTAAAGTTGG
14742872 TATATGTTTTGATAAAAGTGACTATTTTGGTAATGA
66 TATATGTTTTGATAAAAGTGACTATTTTGGTAATGA
14742908 ATGTTATGTTAAGGTTGTTACTGTCTTGGTATTTTGGTTGTAAATATCTTTGGGTGTAAAGTTGG
1 ATGTTATGTTAAGGTTGTTACTGTCTTGGTATTTTGGTTGTAAATATCTTTGGGTGTAAAGTTGG
*
14742973 TATATGTTTTGATAAAGGTGACTATTTTGGTAATGA
66 TATATGTTTTGATAAAAGTGACTATTTTGGTAATGA
14743009 ATGTT
1 ATGTT
14743014 TATAGTCATC
Statistics
Matches: 105, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
101 105 1.00
ACGTcount: A:0.24, C:0.04, G:0.25, T:0.47
Consensus pattern (101 bp):
ATGTTATGTTAAGGTTGTTACTGTCTTGGTATTTTGGTTGTAAATATCTTTGGGTGTAAAGTTGG
TATATGTTTTGATAAAAGTGACTATTTTGGTAATGA
Found at i:14743046 original size:101 final size:98
Alignment explanation
Indices: 14742839--14743043 Score: 266
Period size: 101 Copynumber: 2.0 Consensus size: 98
14742829 GTCTTGGTAT
14742839 TTTGGTTGTAAATATCTTTGGGTGTAAAGTTGGTATATGTTTTGATAAAAGTGACTATTTTGGTA
1 TTTGGTTGTAAATATCTTTGGGTGTAAAGTTGGTATATGTTTTGATAAAAGTGACTATTTTGGTA
* * * * * *
14742904 ATGAATGTTATGTTAAGGTTGTTACTGTCTTGG
66 ATGAATGTTATGTCAACGTTGTAACAGCCCTGG
*
14742937 TATTTTGGTTGTAAATATCTTTGGGTGTAAAGTTGGTATATGTTTTGATAAAGGTGACTATTTTG
1 ---TTTGGTTGTAAATATCTTTGGGTGTAAAGTTGGTATATGTTTTGATAAAAGTGACTATTTTG
* *
14743002 GTAATGAATGTTTATAGTCATCTTTGTAACAGCACCCTGG
63 GTAATGAATG-TTAT-GTCAACGTTGTAACAG--CCCTGG
14743042 TT
1 TT
14743044 GGTATATGGT
Statistics
Matches: 91, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
101 71 0.78
102 6 0.07
103 10 0.11
105 4 0.04
ACGTcount: A:0.25, C:0.06, G:0.24, T:0.45
Consensus pattern (98 bp):
TTTGGTTGTAAATATCTTTGGGTGTAAAGTTGGTATATGTTTTGATAAAAGTGACTATTTTGGTA
ATGAATGTTATGTCAACGTTGTAACAGCCCTGG
Found at i:14756657 original size:11 final size:12
Alignment explanation
Indices: 14756641--14756673 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
14756631 GGACCCAAGA
14756641 TGAATTAATTT-
1 TGAATTAATTTG
*
14756652 TGAATTCATTTG
1 TGAATTAATTTG
14756664 TGAATTAATT
1 TGAATTAATT
14756674 CACTTGTGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.33, C:0.03, G:0.12, T:0.52
Consensus pattern (12 bp):
TGAATTAATTTG
Found at i:14762748 original size:15 final size:15
Alignment explanation
Indices: 14762728--14762758 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
14762718 ATGAATTTAG
14762728 TTAATGTACATGCAT
1 TTAATGTACATGCAT
*
14762743 TTAATGTACATTCAT
1 TTAATGTACATGCAT
14762758 T
1 T
14762759 CATGCACGCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.13, G:0.10, T:0.45
Consensus pattern (15 bp):
TTAATGTACATGCAT
Found at i:14769756 original size:21 final size:21
Alignment explanation
Indices: 14769726--14769766 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
14769716 CGTTACTTTG
*
14769726 GTTTAATGATTTTGA-AAATC
1 GTTTAATGATATTGAGAAATC
14769746 GTTTATATGATATTGAGAAAT
1 GTTTA-ATGATATTGAGAAAT
14769767 GGTCTAATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 9 0.50
22 4 0.22
ACGTcount: A:0.37, C:0.02, G:0.17, T:0.44
Consensus pattern (21 bp):
GTTTAATGATATTGAGAAATC
Found at i:14769834 original size:24 final size:23
Alignment explanation
Indices: 14769815--14769883 Score: 61
Period size: 23 Copynumber: 3.0 Consensus size: 23
14769805 AATGATATTG
14769815 AGAAATAGTATAATCTTGATTTA
1 AGAAATAGTATAATCTTGATTTA
* * * *
14769838 ATGATATTG-AGAAT-TATGATTTTT
1 A-GAAATAGTATAATCT-TGA-TTTA
14769862 AGAAATAGTATAATCTTGATTT
1 AGAAATAGTATAATCTTGATTT
14769884 TTAGAATTAT
Statistics
Matches: 34, Mismatches: 7, Indels: 10
0.67 0.14 0.20
Matches are distributed among these distances:
22 1 0.03
23 16 0.47
24 16 0.47
25 1 0.03
ACGTcount: A:0.39, C:0.03, G:0.14, T:0.43
Consensus pattern (23 bp):
AGAAATAGTATAATCTTGATTTA
Found at i:14769884 original size:24 final size:24
Alignment explanation
Indices: 14769815--14769889 Score: 75
Period size: 24 Copynumber: 3.2 Consensus size: 24
14769805 AATGATATTG
*
14769815 AGAAATAGTATAATCTTGA-TTTA
1 AGAAATAGTATAATCTTGATTTTT
* * *
14769838 ATGATATTG-AGAAT-TATGATTTTT
1 A-GAAATAGTATAATCT-TGATTTTT
14769862 AGAAATAGTATAATCTTGATTTTT
1 AGAAATAGTATAATCTTGATTTTT
14769886 AGAA
1 AGAA
14769890 TTATGTTGTG
Statistics
Matches: 40, Mismatches: 7, Indels: 9
0.71 0.12 0.16
Matches are distributed among these distances:
22 1 0.03
23 13 0.32
24 25 0.62
25 1 0.03
ACGTcount: A:0.40, C:0.03, G:0.15, T:0.43
Consensus pattern (24 bp):
AGAAATAGTATAATCTTGATTTTT
Found at i:14782139 original size:13 final size:13
Alignment explanation
Indices: 14782121--14782146 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14782111 TACGTAAAGA
14782121 AATTAATTAATTT
1 AATTAATTAATTT
14782134 AATTAATTAATTT
1 AATTAATTAATTT
14782147 TACATTTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
AATTAATTAATTT
Found at i:14785251 original size:51 final size:50
Alignment explanation
Indices: 14785080--14785263 Score: 171
Period size: 51 Copynumber: 3.6 Consensus size: 50
14785070 TGAAATTGAA
* *
14785080 AGTGATGGTCACATGTGTAGTACTACGTGCAGGC-GACTACGTGTACCAGA-
1 AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTG-CTACGTGTA-CGGAT
* * * *
14785130 A-TGATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACTGGAT
1 AGTGAT-GGTCACATGTGTAGTACTATGTGCAGGCTGCTACGTGTAC-GGAT
* * * *
14785181 AGCT--TCGATCACGTCTGTAGTACTATGTGTAGGCTGCTACGTGTATCGGAT
1 AG-TGAT-GGTCACATGTGTAGTACTATGTGCAGGCTGCTACGTGTA-CGGAT
*
14785232 AGTGATGGCCACATGTGTAGTACTATGTGCAG
1 AGTGATGGTCACATGTGTAGTACTATGTGCAG
14785264 ACTACTATGT
Statistics
Matches: 105, Mismatches: 20, Indels: 17
0.74 0.14 0.12
Matches are distributed among these distances:
49 5 0.05
50 37 0.35
51 60 0.57
52 2 0.02
53 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.29
Consensus pattern (50 bp):
AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTGCTACGTGTACGGAT
Found at i:14785519 original size:16 final size:16
Alignment explanation
Indices: 14785498--14785529 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14785488 TGATTGAAAG
*
14785498 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
14785514 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
14785530 GCAACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:14790920 original size:24 final size:24
Alignment explanation
Indices: 14790893--14790954 Score: 79
Period size: 24 Copynumber: 2.6 Consensus size: 24
14790883 CCTAGAAAGT
* *
14790893 AATAAAAACACAAACCCATAAATC
1 AATAAAAACGCAAACCCACAAATC
* *
14790917 AATAAAAATGCAAACTCACAAATC
1 AATAAAAACGCAAACCCACAAATC
*
14790941 AATAGAAACGCAAA
1 AATAAAAACGCAAA
14790955 ATCACAAACC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.61, C:0.21, G:0.05, T:0.13
Consensus pattern (24 bp):
AATAAAAACGCAAACCCACAAATC
Found at i:14790959 original size:24 final size:24
Alignment explanation
Indices: 14790893--14790962 Score: 77
Period size: 24 Copynumber: 2.9 Consensus size: 24
14790883 CCTAGAAAGT
* ** *
14790893 AATAAAAACACAAACCCATAAATC
1 AATAAAAACGCAAAATCACAAATC
* *
14790917 AATAAAAATGCAAACTCACAAATC
1 AATAAAAACGCAAAATCACAAATC
*
14790941 AATAGAAACGCAAAATCACAAA
1 AATAAAAACGCAAAATCACAAA
14790963 CCTTGAAGAC
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.61, C:0.21, G:0.04, T:0.13
Consensus pattern (24 bp):
AATAAAAACGCAAAATCACAAATC
Found at i:14792384 original size:36 final size:36
Alignment explanation
Indices: 14792309--14792384 Score: 84
Period size: 36 Copynumber: 2.1 Consensus size: 36
14792299 CATACATACG
*
14792309 TTTTATAATATATACATATACGTACACATTTTTTAAT
1 TTTTATAATATATACATATACG-ACACATTTTATAAT
* *
14792346 TTTTATAA-ATATATATATAC-ACATACTTTTATATAT
1 TTTTATAATATATACATATACGACACA-TTTTATA-AT
14792382 TTT
1 TTT
14792385 CTATGTTTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
34 4 0.12
35 6 0.18
36 16 0.47
37 8 0.24
ACGTcount: A:0.38, C:0.09, G:0.01, T:0.51
Consensus pattern (36 bp):
TTTTATAATATATACATATACGACACATTTTATAAT
Found at i:14792491 original size:21 final size:20
Alignment explanation
Indices: 14792466--14792504 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
14792456 TAATTCACAC
*
14792466 ACATATATTTTTCTTATATGT
1 ACATATATATTT-TTATATGT
14792487 ACATATATATTTTTATAT
1 ACATATATATTTTTATAT
14792505 TTTATAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.33, C:0.08, G:0.03, T:0.56
Consensus pattern (20 bp):
ACATATATATTTTTATATGT
Found at i:14797529 original size:44 final size:44
Alignment explanation
Indices: 14797463--14798221 Score: 672
Period size: 44 Copynumber: 17.7 Consensus size: 44
14797453 TACAAAGCTT
* *
14797463 TATCTCCCTGGTCAGTAGTGGAATAGGTTAAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
14797507 TACCTCCCTGGTCAGCAGTGGAATAGGCTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
14797551 TATCTCCCTAGTCAACAGTGGAATAGGTTGAAGATTGTGAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
14797595 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
14797639 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTTC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
14797683 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
14797727 TATCTCTCTGGCCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
14797771 TATTTCCCTGGTCAGTAGTGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
14797805 TATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * **
14797849 TATCTCCCTGGTGAGCCG-AAAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
14797892 TATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAA-AAT-TACAGATCT
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* * ** * * * ** * *
14797936 TATCTCCCTAAG-CAGTAGTGGAGCAGATCGAAAACGGCGAA-TCT
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * * ****
14797980 TATCTTCCCAAGGT-AGTAG-GGAAGCAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* *
14798023 TTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCT
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
14798068 TATCTCCCTGGTCAGCAGTGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
14798102 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
14798146 CATCTTCCTGGTCAGCAGTAGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
*
14798190 TATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAA
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAA
14798222 AATTACAGAT
Statistics
Matches: 593, Mismatches: 80, Indels: 84
0.78 0.11 0.11
Matches are distributed among these distances:
34 50 0.08
35 4 0.01
36 4 0.01
38 4 0.01
40 4 0.01
41 1 0.00
42 8 0.01
43 58 0.10
44 435 0.73
45 23 0.04
46 1 0.00
47 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (44 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
Found at i:14797702 original size:132 final size:132
Alignment explanation
Indices: 14797463--14798221 Score: 743
Period size: 132 Copynumber: 5.9 Consensus size: 132
14797453 TACAAAGCTT
* *
14797463 TATCTCCCTGGTCAGTAGTGGAATAGGTTAAAGATTGTAAGTCCTACCTCCCTGGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGG
* * * *
14797528 AATAGGCTGAAGATTGTGAATCCTATCTCCCTAGTCAACAGTGGAATAGGTTGAAGATTGTGAGT
66 AATAGGTTGAAGATTGTGAGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
14797593 CC
131 CC
*
14797595 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGG
* * *
14797660 AATAGGTTGAAGATTGTGAGTTCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGT
66 AATAGGTTGAAGATTGTGAGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
14797725 CC
131 CC
* * * *
14797727 TATCTCTCTGGCCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATTTCCCTGGTCAGTAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGG
14797792 AATAGG-T---GA-----A-TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
66 AATAGGTTGAAGATTGTGAGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
14797847 CC
131 CC
* ** **
14797849 TATCTCCCTGGTGAGCCG-AAAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGAG-CAGCAGT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCTG-GTCAGCAGT
* * ** * * ** * * * ** *
14797911 GGAGTAGGTTGAAAATT-ACAGATCTTATCTCCCTAAG-CAGTAGTGGAGCAGATCGAAAACGGC
64 GGAATAGGTTGAAGATTGTGAG-TCCTATCTCCCT-AGTCAGCAGTGGAATAGGTTGAAGATTGT
*
14797974 GAATCT
127 GAATCC
* * * * **** *
14797980 TATCTTCCCAAGGT-AGTAG-GGAAGCAGATTTAAGCCACT-AG-CCTTATCTCCCTAGTCAGCA
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC-TATCTCCCTGGTCAGCA
* * *
14798041 GTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCCTGGTCAGCAGTGG-A-A---T--AG---GT
62 GTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGT
14798096 GAATCC
127 GAATCC
* * * *
14798102 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTGTGAA-TCCCATCTTCCTGGTCAGCAGTA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCTGGTCAGCAGTG
* *
14798166 GAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAA
65 GAATAGGTTGAAGATTGTGAGTCCTATCTCCCT-AGTCAGCAGTGGAATAGGTTGAA
14798222 AATTACAGAT
Statistics
Matches: 513, Mismatches: 80, Indels: 71
0.77 0.12 0.11
Matches are distributed among these distances:
120 2 0.00
121 59 0.12
122 130 0.25
123 5 0.01
124 1 0.00
125 2 0.00
127 1 0.00
128 2 0.00
129 2 0.00
130 1 0.00
131 43 0.08
132 252 0.49
133 13 0.03
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (132 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGG
AATAGGTTGAAGATTGTGAGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
CC
Found at i:14797813 original size:34 final size:34
Alignment explanation
Indices: 14797768--14797832 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
14797758 AGATTGTAAG
* * *
14797768 TCCTATTTCCCTGGTCAGTAGTGGAATAGGTGAA
1 TCCTATCTCCCTAGTCAGCAGTGGAATAGGTGAA
14797802 TCCTATCTCCCTAGTCAGCAGTGGAATAGGT
1 TCCTATCTCCCTAGTCAGCAGTGGAATAGGT
14797833 TGAAGATTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.31
Consensus pattern (34 bp):
TCCTATCTCCCTAGTCAGCAGTGGAATAGGTGAA
Found at i:14798156 original size:78 final size:78
Alignment explanation
Indices: 14798024--14798173 Score: 230
Period size: 78 Copynumber: 1.9 Consensus size: 78
14798014 CCACTAGCCT
** *
14798024 TATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCCTGGTCAGCAGTGG
1 TATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCCATCTCCCTGGTCAGCAGTAG
14798089 AATAGGTGAATCC
66 AATAGGTGAATCC
* * *
14798102 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTGTGAA-TCCCATCTTCCTGGTCAGCAGTA
1 TATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCCCATCTCCCTGGTCAGCAGTA
14798166 GAATAGGT
65 GAATAGGT
14798174 TGAAGATTGT
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
78 63 0.97
79 2 0.03
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (78 bp):
TATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCCATCTCCCTGGTCAGCAGTAG
AATAGGTGAATCC
Found at i:14798371 original size:298 final size:297
Alignment explanation
Indices: 14797743--14798374 Score: 1054
Period size: 298 Copynumber: 2.1 Consensus size: 297
14797733 TCTGGCCAGT
* * * *
14797743 AGTGGAATAGGTTGAAGATTGTAAGTCCTATTTCCCTGGTCAGTAGTGGAATAGGTGAATCCTAT
1 AGTGGAATAGGTTGAAGAATGTAAGTCTTATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCTAT
* * *
14797808 CTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTGAGCCGAAAATA
66 CTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCCATCTCCCTGGTCAGCAGAAAATA
14797873 GGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTA
131 GGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTA
14797938 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAA
196 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAA
* *
14798003 GCAGATTTAAGCCACTAGCCTTATCTCCCTAGTCAGC
261 GCAGACTCAAGCCACTAGCCTTATCTCCCTAGTCAGC
*
14798040 AGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCTAT
1 AGTGGAATAGGTTGAAGAATGTAAGTCTTATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCTAT
* * * *
14798105 CTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTGTGAATCCCATCTTCCTGGTCAGCAGTAGAAT
66 CTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCCATCTCCCTGGTCAGCAG-AAAAT
14798170 AGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTT
130 AGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTT
*
14798235 ATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGA
195 ATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACGGCGAATCTTATCTTCCCAAGGTAGTAGGGA
14798300 AGCAGACTCAAGCCACTAGCCTTATCTCCCTAAG-CAGC
260 AGCAGACTCAAGCCACTAGCCTTATCTCCCT-AGTCAGC
* *
14798338 AGTGGAGTAGGTTGAA-AAT-TACAGATTTTATCTCCCT
1 AGTGGAATAGGTTGAAGAATGTA-AG-TCTTATCTCCCT
14798375 AAGTTACAGT
Statistics
Matches: 315, Mismatches: 16, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
296 2 0.01
297 119 0.38
298 192 0.61
299 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (297 bp):
AGTGGAATAGGTTGAAGAATGTAAGTCTTATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCTAT
CTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCCATCTCCCTGGTCAGCAGAAAATA
GGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTA
TCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAA
GCAGACTCAAGCCACTAGCCTTATCTCCCTAGTCAGC
Found at i:14798443 original size:87 final size:88
Alignment explanation
Indices: 14798322--14798481 Score: 198
Period size: 88 Copynumber: 1.8 Consensus size: 88
14798312 CCACTAGCCT
* * * * *
14798322 TATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAAATTACAGATTTTATCTCCCT-AAGTTACAGTG
1 TATCTCCCTAAGCAGCAGTGGAGCAGATTGAAAATAACAGATCTTATCTCCCTGAAGTTACAGTA
14798386 GAGCAGATTGAAGACAGTAATCC
66 GAGCAGATTGAAGACAGTAATCC
** * * *
14798409 TATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAATAATAGATCTTATCTCTCTGAAGTTGCAGT
1 TATCTCCCT-AAGCAGCAGTGGAGCAGATTGAAAATAACAGATCTTATCTCCCTGAAGTTACAGT
*
14798473 AGAGTAGAT
65 AGAGCAGAT
14798482 CGTATCAGGT
Statistics
Matches: 60, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
87 28 0.47
88 32 0.53
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (88 bp):
TATCTCCCTAAGCAGCAGTGGAGCAGATTGAAAATAACAGATCTTATCTCCCTGAAGTTACAGTA
GAGCAGATTGAAGACAGTAATCC
Found at i:14798457 original size:44 final size:44
Alignment explanation
Indices: 14798320--14798558 Score: 154
Period size: 44 Copynumber: 5.5 Consensus size: 44
14798310 AGCCACTAGC
** * * * *
14798320 CTTATCTCCCT-AAGCAGCAGTGGAGTAGGTTGAAAATTACAGAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAATAATAGAT
* * * * *
14798364 TTTATCTCCCT-AAGTTACAGTGGAGCAGATTGAAGACAGTA-AT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAATAATAGAT
*
14798407 CCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAATAGAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAATAGAT
* * * ** *
14798451 CTTATCTCTCTGAAGTTGCAGTAGAGTAGA-T--CGT-ATCAGGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAAT-AGAT
* * * *
14798492 CTTATCTCCCTGAGGTTGCAGCGGAGCAGACTAAGA-AATCA-AGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAAT-AGA-T
* *
14798536 CTTATCCCCCTAAAGTTGCAGTG
1 CTTATCTCCCTGAAGTTGCAGTG
14798559 AGGCAAACTA
Statistics
Matches: 151, Mismatches: 36, Indels: 16
0.74 0.18 0.08
Matches are distributed among these distances:
40 2 0.01
41 29 0.19
42 1 0.01
43 18 0.12
44 101 0.67
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAATAGAT
Found at i:14798569 original size:44 final size:44
Alignment explanation
Indices: 14798485--14798572 Score: 106
Period size: 44 Copynumber: 2.0 Consensus size: 44
14798475 AGTAGATCGT
* * * * *
14798485 ATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTAAGAA
1 ATCAAGTCTTATCCCCCTAAAGTTGCAGCGGAGCAAACTAAGAA
*
14798529 ATCAAGTCTTATCCCCCTAAAGTTGCAG-TGAGGCAAACTAAGAA
1 ATCAAGTCTTATCCCCCTAAAGTTGCAGCGGA-GCAAACTAAGAA
14798573 TAGAAAATCT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
43 2 0.05
44 35 0.95
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.23
Consensus pattern (44 bp):
ATCAAGTCTTATCCCCCTAAAGTTGCAGCGGAGCAAACTAAGAA
Found at i:14799091 original size:22 final size:22
Alignment explanation
Indices: 14799031--14799088 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 22
14799021 AACCTTCAAG
14799031 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
14799050 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
14799072 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
14799089 GATTTAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.39
22 8 0.24
23 12 0.36
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:14799693 original size:36 final size:36
Alignment explanation
Indices: 14799618--14799693 Score: 84
Period size: 36 Copynumber: 2.1 Consensus size: 36
14799608 CATACATACG
*
14799618 TTTTATAATATATACATATACGTACACATTTTTTAAT
1 TTTTATAATATATACATATACG-ACACATTTTATAAT
* *
14799655 TTTTATAA-ATATATATATAC-ACATACTTTTATATAT
1 TTTTATAATATATACATATACGACACA-TTTTATA-AT
14799691 TTT
1 TTT
14799694 CTATGTTTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
34 4 0.12
35 6 0.18
36 16 0.47
37 8 0.24
ACGTcount: A:0.38, C:0.09, G:0.01, T:0.51
Consensus pattern (36 bp):
TTTTATAATATATACATATACGACACATTTTATAAT
Found at i:14801897 original size:28 final size:29
Alignment explanation
Indices: 14801844--14801947 Score: 81
Period size: 31 Copynumber: 3.4 Consensus size: 29
14801834 CAGAATTAAA
*
14801844 TTATATATTTTTACGATAATAAAAATATAATT
1 TTAT-TATTTTTAAGAT-A-AAAAATATAATT
14801876 TTATTATTTTTAA-A-AAATAAAT-TAAATT
1 TTATTATTTTTAAGATAAA-AAATAT-AATT
*
14801904 TT-TATAATTTTAAGGGATAAAAAATATAATT
1 TTAT-TATTTTTAA--GATAAAAAATATAATT
*
14801935 TTATTATTATTAA
1 TTATTATTTTTAA
14801948 TTTAAAATGA
Statistics
Matches: 59, Mismatches: 4, Indels: 19
0.72 0.05 0.23
Matches are distributed among these distances:
27 4 0.07
28 19 0.32
30 1 0.02
31 26 0.44
32 9 0.15
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.48
Consensus pattern (29 bp):
TTATTATTTTTAAGATAAAAAATATAATT
Found at i:14802893 original size:56 final size:55
Alignment explanation
Indices: 14802824--14802947 Score: 178
Period size: 55 Copynumber: 2.2 Consensus size: 55
14802814 TATATTAAAA
*
14802824 AATATATCAAAAAAATTAATTGATGT-TTTTAAAAAATAAAATATATTTGACATAAT
1 AATATAT-AAAAAAATTAATTGATGTATTTTAAAAAAT-AAATATATTTAACATAAT
* * *
14802880 AATATATAGAAAAATTAGTTGATGTATTTTAAAAAATAAATATATTTAATATAAT
1 AATATATAAAAAAATTAATTGATGTATTTTAAAAAATAAATATATTTAACATAAT
*
14802935 CATATATAAAAAA
1 AATATATAAAAAA
14802948 TATTTTATTA
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
55 43 0.70
56 18 0.30
ACGTcount: A:0.55, C:0.02, G:0.06, T:0.37
Consensus pattern (55 bp):
AATATATAAAAAAATTAATTGATGTATTTTAAAAAATAAATATATTTAACATAAT
Found at i:14813197 original size:34 final size:34
Alignment explanation
Indices: 14813157--14813280 Score: 158
Period size: 34 Copynumber: 3.6 Consensus size: 34
14813147 TTCTGATCTG
* *
14813157 ATATGACATTCTGATATGATATATGTTTCTGAAA
1 ATATGACATTCTAATATGATATATGTTTCTGGAA
* * *
14813191 ATATGACATTCTGATATGGTATATGTTTTTGGAA
1 ATATGACATTCTAATATGATATATGTTTCTGGAA
* * * *
14813225 ATATGACATTCTAATTTAATATATATTTCTGGTA
1 ATATGACATTCTAATATGATATATGTTTCTGGAA
*
14813259 ATGTGACATTCTAATATGATAT
1 ATATGACATTCTAATATGATAT
14813281 TTGTATATGT
Statistics
Matches: 77, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 77 1.00
ACGTcount: A:0.34, C:0.08, G:0.15, T:0.44
Consensus pattern (34 bp):
ATATGACATTCTAATATGATATATGTTTCTGGAA
Found at i:14815700 original size:4 final size:4
Alignment explanation
Indices: 14815691--14815715 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
14815681 AAGGACAAGG
14815691 AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT A
14815716 TAGAGGAGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:14817207 original size:18 final size:19
Alignment explanation
Indices: 14817181--14817216 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
14817171 ACATTTGTAC
14817181 TTGGACTATT-TTATTATT
1 TTGGACTATTATTATTATT
*
14817199 TTGGTCTATTATTATTAT
1 TTGGACTATTATTATTAT
14817217 GATGGGCCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.22, C:0.06, G:0.11, T:0.61
Consensus pattern (19 bp):
TTGGACTATTATTATTATT
Found at i:14817584 original size:22 final size:22
Alignment explanation
Indices: 14817556--14817600 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
14817546 GCTAAGAATG
*
14817556 GTTTGCATAAAGTCTGAAGCAT
1 GTTTGCACAAAGTCTGAAGCAT
14817578 GTTTGCACAAAGTCTGAAGCAT
1 GTTTGCACAAAGTCTGAAGCAT
14817600 G
1 G
14817601 AGTACCATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (22 bp):
GTTTGCACAAAGTCTGAAGCAT
Found at i:14817612 original size:22 final size:22
Alignment explanation
Indices: 14817564--14817605 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
14817554 TGGTTTGCAT
** *
14817564 AAAGTCTGAAGCATGTTTGCAC
1 AAAGTCTGAAGCATGAGTACAC
14817586 AAAGTCTGAAGCATGAGTAC
1 AAAGTCTGAAGCATGAGTAC
14817606 CATAAGTTGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.24
Consensus pattern (22 bp):
AAAGTCTGAAGCATGAGTACAC
Found at i:14818491 original size:15 final size:16
Alignment explanation
Indices: 14818471--14818503 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
14818461 CATTTCACTA
14818471 TTATGTC-TTTTATAT
1 TTATGTCTTTTTATAT
14818486 TTATGTCTTTTTATAT
1 TTATGTCTTTTTATAT
14818502 TT
1 TT
14818504 TGTACGTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.18, C:0.06, G:0.06, T:0.70
Consensus pattern (16 bp):
TTATGTCTTTTTATAT
Found at i:14820879 original size:14 final size:14
Alignment explanation
Indices: 14820860--14820886 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14820850 GCGACCATTT
14820860 TACTATTATGTTGC
1 TACTATTATGTTGC
14820874 TACTATTATGTTG
1 TACTATTATGTTG
14820887 TTATTGTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.11, G:0.15, T:0.52
Consensus pattern (14 bp):
TACTATTATGTTGC
Found at i:14822710 original size:19 final size:19
Alignment explanation
Indices: 14822686--14822723 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
14822676 TTTTAAAGCT
14822686 TTTGCTGAAATA-AAAAATA
1 TTTGCT-AAATACAAAAATA
*
14822705 TTTGCTTAATACAAAAATA
1 TTTGCTAAATACAAAAATA
14822724 GTAATTAGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.50, C:0.08, G:0.08, T:0.34
Consensus pattern (19 bp):
TTTGCTAAATACAAAAATA
Found at i:14826842 original size:15 final size:16
Alignment explanation
Indices: 14826822--14826854 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
14826812 CATTTCACTA
14826822 TTATGTC-TTTTATAT
1 TTATGTCTTTTTATAT
14826837 TTATGTCTTTTTATAT
1 TTATGTCTTTTTATAT
14826853 TT
1 TT
14826855 TGCACGTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.18, C:0.06, G:0.06, T:0.70
Consensus pattern (16 bp):
TTATGTCTTTTTATAT
Found at i:14828518 original size:37 final size:35
Alignment explanation
Indices: 14828465--14828535 Score: 83
Period size: 37 Copynumber: 2.0 Consensus size: 35
14828455 ATTCCAAAAA
14828465 TAATATTATTTCAATAGT-TTAATATTAAATTTAATT
1 TAATATTATTTCAATAGTATT-ATATT-AATTTAATT
*
14828501 TAATACTTATCTT-AATAGTATTTTATTAATTTAAT
1 TAATA-TTAT-TTCAATAGTATTATATTAATTTAAT
14828536 ATTTAATTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
36 13 0.42
37 14 0.45
38 4 0.13
ACGTcount: A:0.39, C:0.04, G:0.03, T:0.54
Consensus pattern (35 bp):
TAATATTATTTCAATAGTATTATATTAATTTAATT
Found at i:14829683 original size:41 final size:41
Alignment explanation
Indices: 14829474--14829673 Score: 235
Period size: 41 Copynumber: 4.9 Consensus size: 41
14829464 TTTAAACAGA
* * * * ** *
14829474 TTCACTGGCACTTCA-CCTGATAGGCTTATAGTCTAATTCCG
1 TTCACCGGCACTT-AGCCTGCTAGACATATAGTCCGATTCAG
* * * *
14829515 TTCGCCGACACTTAGCCTGCTAGGCCTATAG-CCTGATTCAG
1 TTCACCGGCACTTAGCCTGCTAGACATATAGTCC-GATTCAG
14829556 TTCACCGGCACTTAGCCTGCTAGACATATAGTCCGATTCAG
1 TTCACCGGCACTTAGCCTGCTAGACATATAGTCCGATTCAG
*
14829597 TTCACCGGCACTTAGCCTGCTAGACATATAGTCTGATTCAG
1 TTCACCGGCACTTAGCCTGCTAGACATATAGTCCGATTCAG
*
14829638 TTCACCAGCACTTAGCCTGCTAGACGA-ATAGTCCGA
1 TTCACCGGCACTTAGCCTGCTAGAC-ATATAGTCCGA
14829674 ATAATTTCAC
Statistics
Matches: 140, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
40 2 0.01
41 135 0.96
42 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (41 bp):
TTCACCGGCACTTAGCCTGCTAGACATATAGTCCGATTCAG
Found at i:14830339 original size:40 final size:40
Alignment explanation
Indices: 14830284--14830364 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
14830274 AATACAACAA
14830284 ATTTTACATATATATACATGTATATTCGAATATAATTTAT
1 ATTTTACATATATATACATGTATATTCGAATATAATTTAT
14830324 ATTTTACATATATATACATGTATATTCGAATATAATTTAT
1 ATTTTACATATATATACATGTATATTCGAATATAATTTAT
14830364 A
1 A
14830365 CATATATGTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.41, C:0.07, G:0.05, T:0.47
Consensus pattern (40 bp):
ATTTTACATATATATACATGTATATTCGAATATAATTTAT
Found at i:14831648 original size:11 final size:11
Alignment explanation
Indices: 14831619--14831656 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
14831609 GTTGTTACAT
*
14831619 TATTATTTTAA
1 TATTAATTTAA
*
14831630 TAAT-ATTTAA
1 TATTAATTTAA
14831640 TATTAATTTAA
1 TATTAATTTAA
14831651 TATTAA
1 TATTAA
14831657 AGTGATTGAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
10 8 0.35
11 15 0.65
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (11 bp):
TATTAATTTAA
Found at i:14834186 original size:25 final size:26
Alignment explanation
Indices: 14834136--14834187 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
14834126 AGTTGTAGAG
*
14834136 AGAAAATTCTCTGAAGAGATTATTCT
1 AGAAAATTCTCTAAAGAGATTATTCT
* *
14834162 AGAAAATT-TCTAAAGATATTTTTCT
1 AGAAAATTCTCTAAAGAGATTATTCT
14834187 A
1 A
14834188 ATTTACAACT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (26 bp):
AGAAAATTCTCTAAAGAGATTATTCT
Found at i:14837978 original size:28 final size:29
Alignment explanation
Indices: 14837942--14838005 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 29
14837932 TAAATAAAAA
*
14837942 TTCTATTACCATAC-GA-ATTATAACTATT
1 TTCTTTTACC-TACGGACATTATAACTATT
*
14837970 TTCTTTTACCTACGGATCATTATAATTATT
1 TTCTTTTACCTACGGA-CATTATAACTATT
14838000 TTCTTT
1 TTCTTT
14838006 ATTATTATAC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
27 3 0.10
28 11 0.35
30 17 0.55
ACGTcount: A:0.28, C:0.17, G:0.05, T:0.50
Consensus pattern (29 bp):
TTCTTTTACCTACGGACATTATAACTATT
Found at i:14846088 original size:11 final size:10
Alignment explanation
Indices: 14846043--14846091 Score: 53
Period size: 11 Copynumber: 4.5 Consensus size: 10
14846033 ATGGAGTTTT
14846043 AAATCTATATA
1 AAAT-TATATA
*
14846054 TAATATATATA
1 AAAT-TATATA
14846065 TAAATTATATA
1 -AAATTATATA
14846076 AAATTATACTA
1 AAATTATA-TA
14846087 AAATT
1 AAATT
14846092 TAGCACATGA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
10 8 0.24
11 22 0.67
12 3 0.09
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (10 bp):
AAATTATATA
Found at i:14846088 original size:20 final size:20
Alignment explanation
Indices: 14846050--14846088 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
14846040 TTTAAATCTA
*
14846050 TATATAATATATATATAAAT
1 TATATAAAATATATATAAAT
14846070 TATATAAAAT-TATACTAAA
1 TATATAAAATATATA-TAAA
14846089 ATTTAGCACA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (20 bp):
TATATAAAATATATATAAAT
Found at i:14846130 original size:15 final size:14
Alignment explanation
Indices: 14846110--14846140 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
14846100 GAAGTGAAAA
14846110 ATAAATATTATACAT
1 ATAAATATTATA-AT
14846125 ATAAATATTATAAT
1 ATAAATATTATAAT
14846139 AT
1 AT
14846141 TTTTGGATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (14 bp):
ATAAATATTATAAT
Found at i:14860049 original size:44 final size:45
Alignment explanation
Indices: 14859986--14861067 Score: 1058
Period size: 44 Copynumber: 24.5 Consensus size: 45
14859976 TAAAAAACAA
* * * * * *
14859986 CAGATCTTGCCTTCATATATTGG-CGTGAAGTAGATCGAAAATAA
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAG
*
14860030 CAGATGC-TGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGAT-G
1 CAGAT-CTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAG
* * * *
14860074 CAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAG
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAG
* * * * *
14860119 TAGATCTTGTCTTCATGTATTGGT-GTGAAGGAGATCGAAGATAG
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAG
* *
14860163 CAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGAT-G
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAG
* * * * *
14860207 CAGATCTTGTCTTTCC-ATACTAGTGGTGAAGTAGATCGAAGAAAG
1 CAGATCTTGTC-TTCCTATATTGGTAGCGAAGTAGATCGAAGATAG
* * * * *
14860252 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAA
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAG
* * * * *
14860296 CAGATCATGCCTTCCTATATTGGTAGCAAAGTGGGTCGAAGAT-G
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAG
* * * *
14860340 CAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAG
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAG
* * **
14860385 CAGATCTTGTCTTCATGTATTGGT-GTAAAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAG
* *
14860429 CAGATCTTGTCTTCCTATATTAGTAGCGAAGTGGATCGAAGAT-G
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAG
* * * * *
14860473 CAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAG
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAG
* * * * *
14860518 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAA
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAG
* * *
14860562 TAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGAT-G
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAG
* *
14860606 CAGATCTTGTCTTCCCATATTGGT-GACGAAGTAGATCGAAGAAAG
1 CAGATCTTGTCTTCCTATATTGGTAG-CGAAGTAGATCGAAGATAG
* * * * *
14860651 CAGATCTTGTTTTCATGTATTGG-CGTGAAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAG
* * * * * *
14860695 CAGATCTTATCTTCCTATATTGATA-TGAAATGGATTGAAGAT-G
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAG
* * * *
14860738 CAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAG
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAG
* * * * *
14860783 CAGATCTTGCCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAG
* *
14860827 CAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-G
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAG
* * * *
14860870 CAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATTGAAGATAG
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAG
* * * * *
14860915 CAGATCCTGCCTTCCTATATTGGTAG-GAAGTGGGTCGAAG--AC
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAG
* * * * *
14860957 CAGATCTTGTATTCCCATATTGGTGGCGAAGTAGATCGTAGAAAG
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAG
* * * * * *
14861002 CAGATCTTGTCTTCATGTATTGGCA-TGAAGTGGATCGAAAATAG
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAG
* *
14861046 CAGATCATGTCTTCTTATATTG
1 CAGATCTTGTCTTCCTATATTG
14861068 AGGCAGGCTG
Statistics
Matches: 836, Mismatches: 177, Indels: 50
0.79 0.17 0.05
Matches are distributed among these distances:
42 22 0.03
43 57 0.07
44 517 0.62
45 240 0.29
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (45 bp):
CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAG
Found at i:14860225 original size:133 final size:133
Alignment explanation
Indices: 14859986--14861015 Score: 1557
Period size: 133 Copynumber: 7.8 Consensus size: 133
14859976 TAAAAAACAA
* * * * *
14859986 CAGATCTTGCCTTCATATATTGGCGTGAAGTAGATCGAAAATAACAGATGCTGTCTTCCTATATT
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATT
14860051 GGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
66 GGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
14860116 AAG
131 AAG
* * *
14860119 TAGATCTTGTCTTCATGTATTGGTGTGAAGGAGATCGAAGATAGCAGATCCTGTCTTCCTATATT
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATT
* * *
14860184 GGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTTCCATACTAGTGGTGAAGTAGATCGAAGA
66 GGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
14860249 AAG
131 AAG
* * *
14860252 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCATGCCTTCCTATATT
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATT
* *
14860317 GGTAGCAAAGTGGGTCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
66 GGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
14860382 AAG
131 AAG
* * *
14860385 CAGATCTTGTCTTCATGTATTGGTGTAAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATT
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATT
* *
14860450 AGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGA
66 GGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
14860515 AAG
131 AAG
**
14860518 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAATAGATCCTGTCTTCCTATATT
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATT
* *
14860583 GGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGACGAAGTAGATCGAAGA
66 GGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
14860648 AAG
131 AAG
* * *
14860651 CAGATCTTGTTTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATT
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATT
* * * *
14860716 GATA-TGAAATGGATTGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
66 GGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
14860780 AAG
131 AAG
*
14860783 CAGATCTTGCCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATT
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATT
*
14860848 GGTAG-GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATTGAAGA
66 GGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
*
14860912 TAG
131 AAG
* * * * * * * * * * *
14860915 CAGATCCTGCCTTCCTATATTGGTAG-GAAGTGGGTCGAAG--ACCAGATCTTGTATTCCCATAT
1 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATAT
* * * *
14860977 TGGTGGCGAAGTAGATCGTAGAAAGCAGATCTTGTCTTC
65 TGGTAGCGAAGTGGATCGAAG-ATGCAGATCTTGTCTTC
14861016 ATGTATTGGC
Statistics
Matches: 819, Mismatches: 74, Indels: 9
0.91 0.08 0.01
Matches are distributed among these distances:
130 23 0.03
131 12 0.01
132 228 0.28
133 556 0.68
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (133 bp):
CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATT
GGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
AAG
Found at i:14862815 original size:18 final size:19
Alignment explanation
Indices: 14862792--14862830 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
14862782 AAAATATATA
*
14862792 TATGT-ATATTTATTTTTT
1 TATGTAATAATTATTTTTT
14862810 TATGTACATAATTATTTTTT
1 TATGTA-ATAATTATTTTTT
14862830 T
1 T
14862831 TAAACTGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
20 13 0.72
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.67
Consensus pattern (19 bp):
TATGTAATAATTATTTTTT
Found at i:14863238 original size:17 final size:18
Alignment explanation
Indices: 14863216--14863261 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
14863206 TCTTTATCAA
**
14863216 TTTATTTTTTTCATTT-T
1 TTTATTTTGCTCATTTAT
14863233 TTTATTTTGCTCATTTAT
1 TTTATTTTGCTCATTTAT
14863251 TTGTATTTTGC
1 TT-TATTTTGC
14863262 GTGTCATTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 14 0.56
18 3 0.12
19 8 0.32
ACGTcount: A:0.13, C:0.09, G:0.07, T:0.72
Consensus pattern (18 bp):
TTTATTTTGCTCATTTAT
Found at i:14866543 original size:23 final size:23
Alignment explanation
Indices: 14866517--14866567 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
14866507 AATTATTTTA
*
14866517 TTAAATTTAAATTTATTACAATG
1 TTAAATTCAAATTTATTACAATG
* * *
14866540 TTAAATTCAATTTTATTACTATT
1 TTAAATTCAAATTTATTACAATG
14866563 TTAAA
1 TTAAA
14866568 ATATCATACC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.41, C:0.06, G:0.02, T:0.51
Consensus pattern (23 bp):
TTAAATTCAAATTTATTACAATG
Found at i:14866545 original size:17 final size:15
Alignment explanation
Indices: 14866500--14866546 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
14866490 TCAAGTTCAA
* *
14866500 TTATTAAAATT-ATT
1 TTATTAAATTTAAAT
14866514 TTATTAAATTTAAAT
1 TTATTAAATTTAAAT
14866529 TTATTACAATGTTAAAT
1 TTATTA-AAT-TTAAAT
14866546 T
1 T
14866547 CAATTTTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
14 10 0.36
15 8 0.29
16 3 0.11
17 7 0.25
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (15 bp):
TTATTAAATTTAAAT
Found at i:14876718 original size:18 final size:18
Alignment explanation
Indices: 14876673--14876718 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
14876663 AAAAGTTAAA
*
14876673 ATTGGTAACAGAGGGCCG
1 ATTGGTAACTGAGGGCCG
14876691 ATTGGTAACTGAGGGCCG
1 ATTGGTAACTGAGGGCCG
14876709 ATTGGTAACT
1 ATTGGTAACT
14876719 ATAAGTGCAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.26, C:0.15, G:0.35, T:0.24
Consensus pattern (18 bp):
ATTGGTAACTGAGGGCCG
Found at i:14881434 original size:97 final size:96
Alignment explanation
Indices: 14881255--14881444 Score: 238
Period size: 97 Copynumber: 2.0 Consensus size: 96
14881245 ATTCATTTTG
* * * *
14881255 TATCTTAGCAAATTTGCTATCTTGATTGATTCATTCATGTCAAGCTTTGCTCTCAATAAAATTTC
1 TATCTTAGAAAATTTGCTATCTTGATTAATTCATTCATGTCAAGCTTTGCTCTCAACAAAATATC
*
14881320 CTCTTATCCATTGTGATAATCTTTTTCATCT
66 CTCTTATCCATTATGATAATCTTTTTCATCT
* * * * *
14881351 TATCTTAGTAAAATTTGCTATCTTGATTAATTTATTCATTTCGAGCTTAT-TTCTCGACAAAATA
1 TATCTTAG-AAAATTTGCTATCTTGATTAATTCATTCATGTCAAGCTT-TGCTCTCAACAAAATA
* * *
14881415 TCGTCTTGTCTATTATGATAATCTTTTTCA
64 TCCTCTTATCCATTATGATAATCTTTTTCA
14881445 AGCATTTTTT
Statistics
Matches: 79, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
96 8 0.10
97 70 0.89
98 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.09, T:0.47
Consensus pattern (96 bp):
TATCTTAGAAAATTTGCTATCTTGATTAATTCATTCATGTCAAGCTTTGCTCTCAACAAAATATC
CTCTTATCCATTATGATAATCTTTTTCATCT
Found at i:14882081 original size:44 final size:44
Alignment explanation
Indices: 14881917--14882649 Score: 422
Period size: 44 Copynumber: 17.1 Consensus size: 44
14881907 CAGTGAAGTG
* * *
14881917 GATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCA
1 GATTAAAATCACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCA
*** * *
14881961 GA-TCGCATC-TAG-TCTTATCTCCCTGAAGTTGTAGTGGAGCA
1 GATTAAAATCACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCA
** * *
14882002 GACAAAGAAGAT-ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCG
1 GA-TTA-AA-ATCACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCA
* ** *
14882048 GATTAAAACCACAGATCTTATCTCTTTGAAGTTGCAGTAGAGCA
1 GATTAAAATCACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCA
*** * * *
14882092 GA-TCGCATC-TAG-TCTTATCTCTCTGAAGTTGCAGTGGAGCG
1 GATTAAAATCACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCA
* * ** *
14882133 GATTAAAACCACAAATCTTATCTCTTTGAAGTTGCAGTAGAGCA
1 GATTAAAATCACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCA
*** * *
14882177 GA-TCGCATC-TAG-TCTTATCTCCCTGAAGTTGCAGTGGAGCG
1 GATTAAAATCACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCA
* * *
14882218 GATTAAAATCACAGATCTTATCTCTCTGAAGTTCCAGTAGAGCA
1 GATTAAAATCACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCA
* *** * * *
14882262 -AATCGTATC-CAG-TCTTATCTCCATGAAGTTGCAGGGGAACA
1 GATTAAAATCACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCA
** * * *
14882303 GACGAAAGA-AACCA-ATCCTATCTCCCTGAAGTTGCAGTGGAGCG
1 GATTAAA-ATCA-CAGATCTTATCTCCCTGAAGTTGCAGTGGAGCA
* * * * *
14882347 GATTAAAACCACAGATTTTATCTCTCTAAAGTTGCAGTAGAGCA
1 GATTAAAATCACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCA
*** * * **
14882391 GA-TCGCATCA-AG-TCTTATCTCCCT-AAGTTACAGGGGAATA
1 GATTAAAATCACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCA
** * * * *
14882431 GACGAAAGA-AACCA-ATCCTATCTCCCTGAAGTTGGAGTGGAGCG
1 GATTAAA-ATCA-CAGATCTTATCTCCCTGAAGTTGCAGTGGAGCA
* * * * *
14882475 GGTTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGTGCA
1 GATTAAAATCACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCA
*** * * *
14882519 GA-TCGCATCA-AG-TCTTATCTCCCT-AAGTTACAGGGGAACA
1 GATTAAAATCACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCA
** * * *
14882559 GACGAAAGA-AACCA-ATCCTATCTCCCTGAAGTTGCAGTGGAGCG
1 GATTAAA-ATCA-CAGATCTTATCTCCCTGAAGTTGCAGTGGAGCA
** * * *
14882603 GATTAAAGCCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTA
1 GATTAAAATCACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCA
14882647 GAT
1 GAT
14882650 CGCATTCAGT
Statistics
Matches: 501, Mismatches: 152, Indels: 72
0.69 0.21 0.10
Matches are distributed among these distances:
40 26 0.05
41 129 0.26
42 22 0.04
43 59 0.12
44 232 0.46
45 4 0.01
46 29 0.06
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.27
Consensus pattern (44 bp):
GATTAAAATCACAGATCTTATCTCCCTGAAGTTGCAGTGGAGCA
Done.