Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 59 of 222
Found at i:17712324 original size:51 final size:49
Alignment explanation
Indices: 17712197--17712382 Score: 221
Period size: 51 Copynumber: 3.7 Consensus size: 49
17712187 GTGAAAGTGA
*
17712197 TGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGA-ATGAT
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATA-G-T
* * * * * *
17712247 AGGTCGCATGTGTAGTACTAGGTGCAGGCTACTATGCGTACCGGATAGCT
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATAG-T
* * *
17712297 TCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATAGT
1 T-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATAGT
17712347 GATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
1 --TGGTCACATGTGTAGTACTATGTGCAGGCTACTA
17712383 TGTGAACCGG
Statistics
Matches: 113, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
50 41 0.36
51 71 0.63
52 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (49 bp):
TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATAGT
Found at i:17712386 original size:26 final size:26
Alignment explanation
Indices: 17712306--17712386 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
17712296 TTCGATCACG
17712306 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
* *
17712332 CGTGTA-T-CAGATAGTG-ATGG-TCAC-A
1 TGTGTAGTAC-TAT-GTGCA-GGCT-ACTA
17712357 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
17712383 TGTG
1 TGTG
17712387 AACCGGTATC
Statistics
Matches: 42, Mismatches: 4, Indels: 18
0.66 0.06 0.28
Matches are distributed among these distances:
24 1 0.02
25 18 0.43
26 22 0.52
27 1 0.02
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.33
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAGGCTACTA
Found at i:17712423 original size:101 final size:100
Alignment explanation
Indices: 17712202--17712392 Score: 285
Period size: 102 Copynumber: 1.9 Consensus size: 100
17712192 AGTGATGGTC
*
17712202 ACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAATGATAGGTCGCATGTGTAGTACTA
1 ACGTGTGTA-TACTATGTGCAGGCTACTACGTGTACCAGAATGATAGGTCACATGTGTAGTACTA
* *
17712267 GGTGCAGGCTACTATGCGTACCGGATAGCTTCGATC
65 GGTGCAGGCTACTATGCGAACCGGATAGCTTCGATA
*
17712303 ACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATAGTGAT-GGTCACATGTGTAGTAC
1 ACGTGTGTA-TACTATGTGCAGGCTACTACGTGTACCAGA-A-TGATAGGTCACATGTGTAGTAC
* *
17712367 TATGTGCAGGCTACTATGTGAACCGG
63 TAGGTGCAGGCTACTATGCGAACCGG
17712393 TATCATTAAT
Statistics
Matches: 83, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
101 39 0.47
102 40 0.48
103 4 0.05
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (100 bp):
ACGTGTGTATACTATGTGCAGGCTACTACGTGTACCAGAATGATAGGTCACATGTGTAGTACTAG
GTGCAGGCTACTATGCGAACCGGATAGCTTCGATA
Found at i:17712461 original size:46 final size:43
Alignment explanation
Indices: 17712388--17712494 Score: 119
Period size: 46 Copynumber: 2.4 Consensus size: 43
17712378 TACTATGTGA
*
17712388 ACCGG-TATCATTAATTATAAGGTGGTTGCTATGTGCTG-ATCCC
1 ACCGGATATCATT-ATTAAAAGGTGGTTGCTATGTGCTGAAT-CC
*
17712431 ACCGGATATCATTGATTACAAAGGGTGGTTGTTATGTGCTGAATCC
1 ACCGGATATCATT-ATTA-AAA-GGTGGTTGCTATGTGCTGAATCC
*
17712477 ACCGTATATCTATTATTA
1 ACCGGATATC-ATTATTA
17712495 TTCCGAAGTG
Statistics
Matches: 55, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
43 5 0.09
44 11 0.20
45 2 0.04
46 32 0.58
47 5 0.09
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (43 bp):
ACCGGATATCATTATTAAAAGGTGGTTGCTATGTGCTGAATCC
Found at i:17717822 original size:39 final size:39
Alignment explanation
Indices: 17717768--17717908 Score: 185
Period size: 39 Copynumber: 3.6 Consensus size: 39
17717758 AACATGTTTT
* * *
17717768 TGAGTATTCTAATATATGCTTAAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATAATA
**
17717807 TGAGTATTGTGATATATGCTTAAATGTTATGTGATGGTA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATAATA
* *
17717846 TGAGTATTGTGATATATGTTTGAATGTTATGTGATAATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATAATA
* *
17717885 TGTGTAATGTGAT-TCATGCTTAAA
1 TGAGTATTGTGATAT-ATGCTTAAA
17717909 ACTGAATGTG
Statistics
Matches: 89, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
38 1 0.01
39 88 0.99
ACGTcount: A:0.30, C:0.04, G:0.21, T:0.45
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTAAATGTTATGTGATAATA
Found at i:17717893 original size:22 final size:22
Alignment explanation
Indices: 17717853--17717894 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
17717843 GTATGAGTAT
*
17717853 TGTGATATATGTTTGAATGTTA
1 TGTGATATATGTGTGAATGTTA
17717875 TGTGATAATATGTGT-AATGT
1 TGTGAT-ATATGTGTGAATGT
17717895 GATTCATGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.29, C:0.00, G:0.24, T:0.48
Consensus pattern (22 bp):
TGTGATATATGTGTGAATGTTA
Found at i:17719468 original size:464 final size:463
Alignment explanation
Indices: 17718550--17720485 Score: 2652
Period size: 464 Copynumber: 4.2 Consensus size: 463
17718540 TGAGATAGTT
* * * *
17718550 AGAAGGGAGCTTGACCGAAGCCCTCG-TGAATGGCGGCCGTAACTATAACGGTCCTAAGGTAGCA
1 AGAAGGGAGTTTGACCGAAGCCC-CGATGAAAGGCGGCCGTAACTATAATGGTCCTAAGCTAGCA
* * * ** * * * * *
17718614 AAATTATTTAT-TGGTAAGTTCTGAGCTACACGAAAGGCGTAACGATTTGGACACTATCTTGGAG
65 AAATT-TTTGTCGGGTAAGTTCTGACCCGCACGAAAGCCGTAACGATCTGGGCACTGTCTCGGAG
* * * * * * ** *
17718678 AGAGGCTCGGTGAAATAGACATGTTTGTGAAGATGTAGACTACCTGCACCTGGACTGAGAGATCC
129 AGAGGCTTGGTGAAATAAACATGTCTGTGAAGATGCAGACTACCCGCACTTGGACAAAAAGA-CC
* * *
17718743 -TACGAAGCTTCACTGTTCCCTAGGATTGGCTTTGGGCTTTTCCTGCGTAGCTTAGGTGGAAGGC
193 ATATGAAGCTTCACTGTTCCCTGGGATTGGCTTTGGGCTTTTCCTGCGTAGCTTATGTGGAAGGC
* * *
17718807 AAAGAAGGCCTCCTTCC-AGGGGGCCAGAA-CCATGAGTGAGATACCACTCTAGAAGAGCTAGAA
258 GAAGAAGGCCACCTTCCGAGGGGGCCA-AAGCCATCAGTGAGATACCACTCTAGAAGAGCTAGAA
** *
17718870 TTCTA-ACATTGTGTCAGGA-TCTACAGGCCAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGG
322 TTCTAGAC-TTGTGTCAAAACT-TACGGGCCAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGG
* * * * ** *
17718933 CGTAAGCCTCCAAAAAGGTAATGGAGGCGTGCAAAGGTTTCCTCGGGCCGGACGGAGATT-GACC
385 CGTAGGCCTCCCAAAAGGTAATGGAGGCATACAAAGGTTTCCTCGGGCCAAACGGAGATTAG-CG
* *
17718997 CTCGAGTGCAAAGGT
449 TTCGAGTGCAAAGGC
* * * * * ** * *
17719012 AAAAGGGAGCTTGACTGAAGCCCTGATGAACGGCAACCGTAACTGTAACGGTCCTAAGCTAGCAA
1 AGAAGGGAGTTTGACCGAAGCCCCGATGAAAGGCGGCCGTAACTATAATGGTCCTAAGCTAGCAA
*
17719077 AATTCTTTGTCGGGTAAGTTCTGACCCGTACGAAAGCCGTAACGATCTGGGCACTGTCTCGGAGA
66 AATT-TTTGTCGGGTAAGTTCTGACCCGCACGAAAGCCGTAACGATCTGGGCACTGTCTCGGAGA
*
17719142 GAGGCTTGGTGAAATAAACATGTCTGTGAAGATGCGGACTACCCGCACTTGGACAAAAAGACCAT
130 GAGGCTTGGTGAAATAAACATGTCTGTGAAGATGCAGACTACCCGCACTTGGACAAAAAGACCAT
17719207 ATGAAGCTTCACTGTTCCCTGGGATTGGCTTTGGGCTTTTCCTGCGTAGCTTATGTGGAAGGCGA
195 ATGAAGCTTCACTGTTCCCTGGGATTGGCTTTGGGCTTTTCCTGCGTAGCTTATGTGGAAGGCGA
*
17719272 AGAAGGCCACCTTCCGGGGGGGCCAAAGCCATCAGTGAGATACCACTCTAGAAGAGCTAGAATTC
260 AGAAGGCCACCTTCCGAGGGGGCCAAAGCCATCAGTGAGATACCACTCTAGAAGAGCTAGAATTC
17719337 TAGACTTGTGTCAAAACTTACGGGCCAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAG
325 TAGACTTGTGTCAAAACTTACGGGCCAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAG
* *
17719402 GCCTCCCAAAAGGTAATGGAGGCATACAAAGGTTTTCTCGGGCCAAATGGAGATTAGCGTTCGAG
390 GCCTCCCAAAAGGTAATGGAGGCATACAAAGGTTTCCTCGGGCCAAACGGAGATTAGCGTTCGAG
17719467 TGCAAAGGC
455 TGCAAAGGC
* * * * *
17719476 AGAAGGGTGTTTGACCGAAGCCCCGAAGAAAGGCGGCCGTAACTATAATGGTCTTAAGCTTGCGA
1 AGAAGGGAGTTTGACCGAAGCCCCGATGAAAGGCGGCCGTAACTATAATGGTCCTAAGCTAGCAA
17719541 AATTTCTTGTCGGGTAAGTTCTGACCCGCACGAAAGCCGTAACGATCTGGGCACTGTCTCGGAGA
66 AATTT-TTGTCGGGTAAGTTCTGACCCGCACGAAAGCCGTAACGATCTGGGCACTGTCTCGGAGA
17719606 GAGGCTTGGTGAAATAAACATGTCTGTGAAGATGCAGACTACCCGCACTTGGA-AAGAAAGACCA
130 GAGGCTTGGTGAAATAAACATGTCTGTGAAGATGCAGACTACCCGCACTTGGACAA-AAAGACCA
* *
17719670 TATGAAGCTTCACTGTTCCCTGGGATTGGCTTTGGGCTTTTCTTGCGCAGCTTATGTGGAAGGCG
194 TATGAAGCTTCACTGTTCCCTGGGATTGGCTTTGGGCTTTTCCTGCGTAGCTTATGTGGAAGGCG
* *
17719735 AAGAAGGCCACCTTCTGAGGGGGCCAAAGCCATCAGTGAGATGCCACTCTAGAAGAGCTAGAATT
259 AAGAAGGCCACCTTCCGAGGGGGCCAAAGCCATCAGTGAGATACCACTCTAGAAGAGCTAGAATT
* *
17719800 CTAGACTTGTGTCAAAACTTACGGGCCAAGGGATAGTCTCAGGTAGATAGTTTCTATGGGGCGTA
324 CTAGACTTGTGTCAAAACTTACGGGCCAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTA
* * * * *
17719865 GGCCTCCCAAAAGGTAATAGAGGCAGACAAAGGTTTTCTCGGGCCGAATGGAGATTAGCGTTCGA
389 GGCCTCCCAAAAGGTAATGGAGGCATACAAAGGTTTCCTCGGGCCAAACGGAGATTAGCGTTCGA
*
17719930 GTGCAAAGGT
454 GTGCAAAGGC
* * ** * * *
17719940 AGAATGGTGTTTGACCGAAGCCCCGGGGAAAGGCGGTCGTAACTATAATGGTCCTAAGCTTGCGA
1 AGAAGGGAGTTTGACCGAAGCCCCGATGAAAGGCGGCCGTAACTATAATGGTCCTAAGCTAGCAA
* * **
17720005 AATTTCTTGTCGAGTAAGTTCTGACCCGCACGAAAGCCATAATAATCTGGGCACTGTCTCGGAGA
66 AATTT-TTGTCGGGTAAGTTCTGACCCGCACGAAAGCCGTAACGATCTGGGCACTGTCTCGGAGA
* * *
17720070 GAGGCTTGGTGAAATAAACATGTCTGTGAAGATGCGGACTACCCGCACTTGGATAGAAAGACCAT
130 GAGGCTTGGTGAAATAAACATGTCTGTGAAGATGCAGACTACCCGCACTTGGACAAAAAGACCAT
*
17720135 ATGAAGCTTCACTGTTCCCTGGGATTGGTTTTGGGCTTTTCCTGCGTAGCTTATGTGGAAGGCGA
195 ATGAAGCTTCACTGTTCCCTGGGATTGGCTTTGGGCTTTTCCTGCGTAGCTTATGTGGAAGGCGA
* ** * * * *
17720200 AGAAGGCCTCCTT-TTAGGGGGGCCAGAGCCATGAGTGAGATACCACTCTGGAAGAGATAGAATT
260 AGAAGGCCACCTTCCGA-GGGGGCCAAAGCCATCAGTGAGATACCACTCTAGAAGAGCTAGAATT
* * * * * * * *
17720264 CTAGCCTTGTGTTAAGACCTACGCGCCAAGGGACAGTTTCAGGTAGACCGTTTCTATGGGGCATA
324 CTAGACTTGTGTCAAAACTTACGGGCCAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTA
* * *
17720329 GGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCAAACGGAGATTAGC-TCTCG
389 GGCCTCCCAAAAGGTAATGGAGGCATACAAAGGTTTCCTCGGGCCAAACGGAGATTAGCGT-TCG
17720393 AGTGCAAAGGC
453 AGTGCAAAGGC
** * ** * *
17720404 AGAAGGGAGTTTGACTAAAGCCCCGGTGAAAGGCGATCGTAACTATAATGGTCCTAAGGTAGCTA
1 AGAAGGGAGTTTGACCGAAGCCCCGATGAAAGGCGGCCGTAACTATAATGGTCCTAAGCTAGCAA
*
17720469 AATTCCTTGTCGGGTAA
66 AATT-TTTGTCGGGTAA
17720486 TGTAACAGCC
Statistics
Matches: 1331, Mismatches: 129, Indels: 26
0.90 0.09 0.02
Matches are distributed among these distances:
461 1 0.00
462 65 0.05
463 179 0.13
464 1081 0.81
465 5 0.00
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (463 bp):
AGAAGGGAGTTTGACCGAAGCCCCGATGAAAGGCGGCCGTAACTATAATGGTCCTAAGCTAGCAA
AATTTTTGTCGGGTAAGTTCTGACCCGCACGAAAGCCGTAACGATCTGGGCACTGTCTCGGAGAG
AGGCTTGGTGAAATAAACATGTCTGTGAAGATGCAGACTACCCGCACTTGGACAAAAAGACCATA
TGAAGCTTCACTGTTCCCTGGGATTGGCTTTGGGCTTTTCCTGCGTAGCTTATGTGGAAGGCGAA
GAAGGCCACCTTCCGAGGGGGCCAAAGCCATCAGTGAGATACCACTCTAGAAGAGCTAGAATTCT
AGACTTGTGTCAAAACTTACGGGCCAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGG
CCTCCCAAAAGGTAATGGAGGCATACAAAGGTTTCCTCGGGCCAAACGGAGATTAGCGTTCGAGT
GCAAAGGC
Found at i:17721990 original size:48 final size:48
Alignment explanation
Indices: 17721797--17721996 Score: 222
Period size: 48 Copynumber: 4.2 Consensus size: 48
17721787 TACTATGTGT
* ** *
17721797 ACCGATAATCTGTTATGACACAAGGGTGGCACATATTGTGTGCAGGCC
1 ACCGAGAATCTGTTATGACACAAGGGTGGCACGGACTGTGTGCAGGCC
* * * * *
17721845 ATCGATATTCTGTTGTGACACAAGGGCGGCACGGACTGTGTGCAGGCC
1 ACCGAGAATCTGTTATGACACAAGGGTGGCACGGACTGTGTGCAGGCC
* * * * *
17721893 ACCAATAA-CTTGTTAAGATACAAGGGTGGCACGGACTATGTGCAGGCC
1 ACCGAGAATC-TGTTATGACACAAGGGTGGCACGGACTGTGTGCAGGCC
* * * *
17721941 ACTGAGAATCTGTTATTACACAAAGGTGGTACGGACTGTGTGCAGGCC
1 ACCGAGAATCTGTTATGACACAAGGGTGGCACGGACTGTGTGCAGGCC
17721989 ACCGAGAA
1 ACCGAGAA
17721997 ATATGTTTTT
Statistics
Matches: 125, Mismatches: 25, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
47 1 0.01
48 123 0.98
49 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (48 bp):
ACCGAGAATCTGTTATGACACAAGGGTGGCACGGACTGTGTGCAGGCC
Found at i:17724658 original size:21 final size:22
Alignment explanation
Indices: 17724632--17724677 Score: 76
Period size: 21 Copynumber: 2.1 Consensus size: 22
17724622 AGAAAGAAAG
17724632 TTAAAAATTATATTAATT-ATT
1 TTAAAAATTATATTAATTAATT
*
17724653 TTAAAATTTATATTAATTAATT
1 TTAAAAATTATATTAATTAATT
17724675 TTA
1 TTA
17724678 TTTAATTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 17 0.74
22 6 0.26
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (22 bp):
TTAAAAATTATATTAATTAATT
Found at i:17727915 original size:21 final size:22
Alignment explanation
Indices: 17727887--17727969 Score: 82
Period size: 23 Copynumber: 3.8 Consensus size: 22
17727877 CTTACTTTTA
17727887 TTTATTTATTTATT-TT-ATAT
1 TTTATTTATTTATTATTAATAT
17727907 TTATATTTA-TTATTATTAATAT
1 TT-TATTTATTTATTATTAATAT
* * *
17727929 TTTATTCATTTATTACTTATTGT
1 TTTATTTATTTATTA-TTAATAT
*
17727952 TTTATTTTTCTTATTATT
1 TTTATTTAT-TTATTATT
17727970 CTTAGTTTTT
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
20 7 0.13
21 13 0.25
22 12 0.23
23 14 0.27
24 6 0.12
ACGTcount: A:0.25, C:0.04, G:0.01, T:0.70
Consensus pattern (22 bp):
TTTATTTATTTATTATTAATAT
Found at i:17727921 original size:3 final size:3
Alignment explanation
Indices: 17727913--17728016 Score: 54
Period size: 3 Copynumber: 34.7 Consensus size: 3
17727903 ATATTTATAT
* * *
17727913 TTA TTA TTA TTA ATA TT- TTA TTCA TTTA TTA CTTA TTG TT- TTA TTT
1 TTA TTA TTA TTA TTA TTA TTA TT-A -TTA TTA -TTA TTA TTA TTA TTA
* * * * * * *
17727959 TTC TTA TTA TTC TTA GTTT TTA TCA TT- TTT TTA TTA TTA CTC TTA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
17728004 TTA TTA TT- TTA TT
1 TTA TTA TTA TTA TT
17728017 GTTTTATTGT
Statistics
Matches: 76, Mismatches: 17, Indels: 16
0.70 0.16 0.15
Matches are distributed among these distances:
2 8 0.11
3 59 0.78
4 7 0.09
5 2 0.03
ACGTcount: A:0.23, C:0.07, G:0.02, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:17727928 original size:16 final size:17
Alignment explanation
Indices: 17727893--17727930 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
17727883 TTTATTTATT
* *
17727893 TATTTATTTTATATTTA
1 TATTTATTATATATTAA
17727910 TATTTATTAT-TATTAA
1 TATTTATTATATATTAA
17727926 TATTT
1 TATTT
17727931 TATTCATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
TATTTATTATATATTAA
Found at i:17741418 original size:27 final size:28
Alignment explanation
Indices: 17741387--17741458 Score: 128
Period size: 28 Copynumber: 2.6 Consensus size: 28
17741377 TAGCCCTCTT
17741387 TTTTTTTGGTATATTTTGGTAAATAATA
1 TTTTTTTGGTATATTTTGGTAAATAATA
*
17741415 TTTTTTTGATATATTTTGGTAAATAAT-
1 TTTTTTTGGTATATTTTGGTAAATAATA
17741442 TTTTTTTGGTATATTTT
1 TTTTTTTGGTATATTTT
17741459 TATTTCTTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
27 16 0.38
28 26 0.62
ACGTcount: A:0.25, C:0.00, G:0.12, T:0.62
Consensus pattern (28 bp):
TTTTTTTGGTATATTTTGGTAAATAATA
Found at i:17742355 original size:22 final size:22
Alignment explanation
Indices: 17742330--17742377 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
17742320 CCTTATTTAC
17742330 TCCAACATGATCCCCTTTTTGT
1 TCCAACATGATCCCCTTTTTGT
17742352 TCCAACATGATCCCCTTTTTGT
1 TCCAACATGATCCCCTTTTTGT
17742374 TCCA
1 TCCA
17742378 TTGTCTCCTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.19, C:0.33, G:0.08, T:0.40
Consensus pattern (22 bp):
TCCAACATGATCCCCTTTTTGT
Found at i:17742754 original size:44 final size:44
Alignment explanation
Indices: 17742695--17742793 Score: 171
Period size: 44 Copynumber: 2.2 Consensus size: 44
17742685 AACAACCTCC
* *
17742695 TTTCTTTCTCTTTTCTTCTCTTCCTCTAATTATTCTTGTTTCCT
1 TTTCTTTCTCCTTTCTTCTCTTCCTCTAATTATTCTTGTTCCCT
*
17742739 TTTCTTTCTCCTTTCTTCTCTTCCTCTAATTCTTCTTGTTCCCT
1 TTTCTTTCTCCTTTCTTCTCTTCCTCTAATTATTCTTGTTCCCT
17742783 TTTCTTTCTCC
1 TTTCTTTCTCC
17742794 CCTTATTTCT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 52 1.00
ACGTcount: A:0.05, C:0.31, G:0.02, T:0.62
Consensus pattern (44 bp):
TTTCTTTCTCCTTTCTTCTCTTCCTCTAATTATTCTTGTTCCCT
Found at i:17742805 original size:44 final size:44
Alignment explanation
Indices: 17742695--17742805 Score: 143
Period size: 44 Copynumber: 2.5 Consensus size: 44
17742685 AACAACCTCC
** * *
17742695 TTTCTTTCTCTTTTCTTCTCTTCCTCTAATTATTCTTGTTTCCT
1 TTTCTTTCTCCCTTATTCTCTTCCTCTAATTATTCTTGTTCCCT
* * *
17742739 TTTCTTTCTCCTTTCTTCTCTTCCTCTAATTCTTCTTGTTCCCT
1 TTTCTTTCTCCCTTATTCTCTTCCTCTAATTATTCTTGTTCCCT
17742783 TTTCTTTCTCCCCTTATT-TCTTC
1 TTTCTTTCT-CCCTTATTCTCTTC
17742806 TTTTGTCGTA
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
44 55 0.90
45 6 0.10
ACGTcount: A:0.05, C:0.32, G:0.02, T:0.61
Consensus pattern (44 bp):
TTTCTTTCTCCCTTATTCTCTTCCTCTAATTATTCTTGTTCCCT
Found at i:17743534 original size:19 final size:19
Alignment explanation
Indices: 17743510--17743549 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
17743500 AAAAATTATA
17743510 ATTATTTATAATCGAAACC
1 ATTATTTATAATCGAAACC
17743529 ATTATTTATAATCGAAACC
1 ATTATTTATAATCGAAACC
17743548 AT
1 AT
17743550 GTTAGAAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.42, C:0.15, G:0.05, T:0.38
Consensus pattern (19 bp):
ATTATTTATAATCGAAACC
Found at i:17745579 original size:25 final size:24
Alignment explanation
Indices: 17745538--17745590 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
17745528 CTGAATAACA
* *
17745538 GTAAGCTCATGAGAGCTGAGAATTG
1 GTAAGCTCATGAAAGCTGA-AATCG
17745563 GTAAGCTCAT-ACAAGCTGAAATCG
1 GTAAGCTCATGA-AAGCTGAAATCG
17745587 GTAA
1 GTAA
17745591 CCTTAATGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 9 0.36
25 16 0.64
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.23
Consensus pattern (24 bp):
GTAAGCTCATGAAAGCTGAAATCG
Found at i:17753231 original size:6 final size:6
Alignment explanation
Indices: 17753205--17753255 Score: 57
Period size: 6 Copynumber: 8.3 Consensus size: 6
17753195 AAAGGCAAAG
* * * *
17753205 ATAAAA ATGAAAA ACAAAA ATAAAA ATGAAA CTAAAA ATAAAA CTAAAA
1 ATAAAA AT-AAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
17753254 AT
1 AT
17753256 TTTAAAATTA
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
6 31 0.86
7 5 0.14
ACGTcount: A:0.75, C:0.06, G:0.04, T:0.16
Consensus pattern (6 bp):
ATAAAA
Found at i:17753242 original size:19 final size:18
Alignment explanation
Indices: 17753200--17753247 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 18
17753190 AAAGTAAAGG
*
17753200 CAAAGATAAAAATGAAAAA
1 CAAAAATAAAAATG-AAAA
17753219 CAAAAATAAAAATG-AAA
1 CAAAAATAAAAATGAAAA
17753236 CTAAAAATAAAA
1 C-AAAAATAAAA
17753248 CTAAAAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 4 0.15
18 10 0.37
19 13 0.48
ACGTcount: A:0.75, C:0.06, G:0.06, T:0.12
Consensus pattern (18 bp):
CAAAAATAAAAATGAAAA
Found at i:17755154 original size:26 final size:26
Alignment explanation
Indices: 17755118--17755210 Score: 96
Period size: 26 Copynumber: 3.6 Consensus size: 26
17755108 TATTCCGACC
* *
17755118 CACAGCTCATGTGAGTAGGCCCATTT
1 CACAGCCCATGTGAGCAGGCCCATTT
17755144 CACAGCCCATGTGAGCAGGCCCATTT
1 CACAGCCCATGTGAGCAGGCCCATTT
* *** **
17755170 CACTGCTGGTGTGAGCAAACCCATTT
1 CACAGCCCATGTGAGCAGGCCCATTT
* *
17755196 CACAGCTCGTGTGAG
1 CACAGCCCATGTGAG
17755211 AAACCATGTA
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 57 1.00
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.24
Consensus pattern (26 bp):
CACAGCCCATGTGAGCAGGCCCATTT
Found at i:17763902 original size:27 final size:28
Alignment explanation
Indices: 17763868--17763934 Score: 84
Period size: 27 Copynumber: 2.4 Consensus size: 28
17763858 ATACATGAAT
17763868 TCATTTCAATATTCATATCCCATT-TCA
1 TCATTTCAATATTCATATCCCATTCTCA
* **
17763895 TCATTTC-ATATTTCATTTCCCATTCTTT
1 TCATTTCAATA-TTCATATCCCATTCTCA
17763923 TCATTTCAATAT
1 TCATTTCAATAT
17763935 CAACACATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
26 3 0.09
27 19 0.56
28 9 0.26
29 3 0.09
ACGTcount: A:0.25, C:0.24, G:0.00, T:0.51
Consensus pattern (28 bp):
TCATTTCAATATTCATATCCCATTCTCA
Found at i:17763911 original size:20 final size:19
Alignment explanation
Indices: 17763867--17763934 Score: 54
Period size: 20 Copynumber: 3.7 Consensus size: 19
17763857 AATACATGAA
17763867 TTCATTTCAATATTCATAT
1 TTCATTTCAATATTCATAT
**
17763886 CCCATTTC-ATCATTTCATAT
1 TTCATTTCAAT-A-TTCATAT
**
17763906 TTCATTTC-CCATTC-T-T
1 TTCATTTCAATATTCATAT
17763922 TTCATTTCAATAT
1 TTCATTTCAATAT
17763935 CAACACATAA
Statistics
Matches: 38, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
16 9 0.24
17 3 0.08
18 5 0.13
19 8 0.21
20 13 0.34
ACGTcount: A:0.25, C:0.24, G:0.00, T:0.51
Consensus pattern (19 bp):
TTCATTTCAATATTCATAT
Found at i:17786920 original size:28 final size:27
Alignment explanation
Indices: 17786859--17786983 Score: 187
Period size: 28 Copynumber: 4.6 Consensus size: 27
17786849 ATATTAAGTC
* * *
17786859 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
17786886 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
17786914 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
* *
17786942 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
17786969 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
17786984 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
27 38 0.41
28 54 0.59
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:17786920 original size:55 final size:55
Alignment explanation
Indices: 17786859--17787008 Score: 194
Period size: 56 Copynumber: 2.7 Consensus size: 55
17786849 ATATTAAGTC
* *
17786859 CGCACACTCAGTGCTATATAATC-AACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAGTC-AACT
* * *
17786914 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACT
* * * *
17786969 CGCACACTTAGTGCTGCACAATTTAAACCCGCACACTTAG
1 CGCACACTTAGTGCTACATAA-TCAAACTCGCACACTTAG
17787009 CGCCAATCTC
Statistics
Matches: 83, Mismatches: 10, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
55 41 0.49
56 42 0.51
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACT
Found at i:17794700 original size:55 final size:55
Alignment explanation
Indices: 17794639--17794815 Score: 246
Period size: 55 Copynumber: 3.2 Consensus size: 55
17794629 ATATTAAGTC
* * *
17794639 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
17794694 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * * *
17794749 CGCACACTTAGTGCTACATATTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAA-TCAAACT
17794805 CGCACACTTAG
1 CGCACACTTAG
17794816 CGCCAATCTC
Statistics
Matches: 109, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
55 93 0.85
56 16 0.15
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:17794703 original size:28 final size:27
Alignment explanation
Indices: 17794639--17794790 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
17794629 ATATTAAGTC
* *
17794639 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
17794666 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
17794694 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
17794721 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
17794749 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
17794776 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
17794791 GCACAATTTA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:17803368 original size:18 final size:17
Alignment explanation
Indices: 17803345--17803379 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
17803335 CATATGGTAC
*
17803345 CATTTCATATAATCATTT
1 CATTTCAAAT-ATCATTT
17803363 CATTTCAAATATCATTT
1 CATTTCAAATATCATTT
17803380 ATCAAGTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.49
Consensus pattern (17 bp):
CATTTCAAATATCATTT
Found at i:17814048 original size:25 final size:25
Alignment explanation
Indices: 17814005--17814119 Score: 115
Period size: 25 Copynumber: 4.6 Consensus size: 25
17813995 GGTTATCAAT
*
17814005 TTCAGCTCTTATGAGCTTACCGTTA
1 TTCAGCTCGTATGAGCTTACCGTTA
* * *
17814030 CTCATCTCGTATGAGCTTATCGTTA
1 TTCAGCTCGTATGAGCTTACCGTTA
* * * * *
17814055 TTCAACTTGGAGGAACTTACCGTTA
1 TTCAGCTCGTATGAGCTTACCGTTA
* *
17814080 TTCAGCTCGGAGGAGCTTACCGTT-
1 TTCAGCTCGTATGAGCTTACCGTTA
*
17814104 TACAGCTCGTATGAGC
1 TTCAGCTCGTATGAGC
17814120 ATACATGTAC
Statistics
Matches: 73, Mismatches: 17, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
24 13 0.18
25 60 0.82
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.34
Consensus pattern (25 bp):
TTCAGCTCGTATGAGCTTACCGTTA
Found at i:17817547 original size:18 final size:18
Alignment explanation
Indices: 17817524--17817558 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
17817514 CTAGAACAAG
17817524 AAGCATAAAAATAGTTTC
1 AAGCATAAAAATAGTTTC
*
17817542 AAGCATGAAAATAGTTT
1 AAGCATAAAAATAGTTT
17817559 GGCACATCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.49, C:0.09, G:0.14, T:0.29
Consensus pattern (18 bp):
AAGCATAAAAATAGTTTC
Found at i:17822230 original size:34 final size:34
Alignment explanation
Indices: 17822187--17822255 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
17822177 TCACCATATG
17822187 TATAGTGTTTAGTTGGCCACTGATAGGAATTGAT
1 TATAGTGTTTAGTTGGCCACTGATAGGAATTGAT
17822221 TATAGTGTTTAGTTGGCCACTGATAGGAATTGAT
1 TATAGTGTTTAGTTGGCCACTGATAGGAATTGAT
17822255 T
1 T
17822256 GCCATATTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.26, C:0.09, G:0.26, T:0.39
Consensus pattern (34 bp):
TATAGTGTTTAGTTGGCCACTGATAGGAATTGAT
Found at i:17823863 original size:23 final size:23
Alignment explanation
Indices: 17823813--17823864 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
17823803 AGTGGTAAAA
*
17823813 TGTTAGCTTACCTTGAGGTCTCG
1 TGTTTGCTTACCTTGAGGTCTCG
*
17823836 TGTTTGCTTGCCTTGAGGTCTCG
1 TGTTTGCTTACCTTGAGGTCTCG
17823859 TGTTTG
1 TGTTTG
17823865 AACCCCCATG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.08, C:0.19, G:0.29, T:0.44
Consensus pattern (23 bp):
TGTTTGCTTACCTTGAGGTCTCG
Found at i:17830822 original size:8 final size:8
Alignment explanation
Indices: 17830809--17830850 Score: 84
Period size: 8 Copynumber: 5.2 Consensus size: 8
17830799 TGAAATATGT
17830809 GGTTAGTG
1 GGTTAGTG
17830817 GGTTAGTG
1 GGTTAGTG
17830825 GGTTAGTG
1 GGTTAGTG
17830833 GGTTAGTG
1 GGTTAGTG
17830841 GGTTAGTG
1 GGTTAGTG
17830849 GG
1 GG
17830851 GAGTTGGGAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 34 1.00
ACGTcount: A:0.12, C:0.00, G:0.52, T:0.36
Consensus pattern (8 bp):
GGTTAGTG
Found at i:17838626 original size:21 final size:22
Alignment explanation
Indices: 17838602--17838644 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
17838592 GAAACTAATA
*
17838602 TGTTTTTA-GGTTAAAAATAGG
1 TGTTTTGATGGTTAAAAATAGG
*
17838623 TGTTTTGATGTTTAAAAATAGG
1 TGTTTTGATGGTTAAAAATAGG
17838645 GTAAAGAGGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.33, C:0.00, G:0.23, T:0.44
Consensus pattern (22 bp):
TGTTTTGATGGTTAAAAATAGG
Found at i:17852695 original size:35 final size:35
Alignment explanation
Indices: 17852649--17852741 Score: 123
Period size: 35 Copynumber: 2.6 Consensus size: 35
17852639 GGTTGGATTT
*
17852649 GCTCTTATGAGCATTGGTGTGTCGCGGATGGACTA
1 GCTCTTATGAGCATTGGTGTGTCGCGAATGGACTA
** *
17852684 GCTCTTATGAGCATTGGTGTGTTTCGAATGGATTA
1 GCTCTTATGAGCATTGGTGTGTCGCGAATGGACTA
* *
17852719 TCTCTTATGAGTATCTGGTGTGT
1 GCTCTTATGAGCAT-TGGTGTGT
17852742 TTTGGTTGGA
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
35 43 0.84
36 8 0.16
ACGTcount: A:0.17, C:0.14, G:0.30, T:0.39
Consensus pattern (35 bp):
GCTCTTATGAGCATTGGTGTGTCGCGAATGGACTA
Found at i:17857776 original size:102 final size:100
Alignment explanation
Indices: 17857600--17857929 Score: 471
Period size: 102 Copynumber: 3.2 Consensus size: 100
17857590 CCAGTGATTC
* *
17857600 GGGGAATCAACACTTAGCAACCCCTTTCACATTTAAGATACGGTGGGATCAGCACTTAGCAACCA
1 GGGGAATCAACACTTAGCAACCCC-TTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCA
* *
17857665 CCAATGAGTCGGAAAATCAGTACTTAGCAACCCCTTG
65 CCAATGAGTCGG-GAATCAGCACTTAGCAACCCCTTG
* * *
17857702 GGGGAATCAACACCTAGCAACCCACCTCACATTTAAAATACGGTGGAATCAGCACCTAGCAACCA
1 GGGGAATCAACACTTAGCAACCC-CTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCA
*
17857767 CCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTTA
65 CCAATGAGTC-GGGAATCAGCACTTAGCAACCCCTTG
* * * *
17857804 GGAGAATCAACACTTAGCAACCCTCTTCACATTTAAAATACGGGGGAATCAACACTTAGCAACCG
1 GGGGAATCAACACTTAGCAACCC-CTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCA
* *
17857869 CCAATGATTCAGGGAATCAGCACTTAGCAATCCCTTG
65 CCAATGAGTC-GGGAATCAGCACTTAGCAACCCCTTG
*
17857906 GGGGAATCAGCACTTAGCAACCCC
1 GGGGAATCAACACTTAGCAACCCC
17857930 CTTTATATTC
Statistics
Matches: 204, Mismatches: 22, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
101 1 0.00
102 200 0.98
103 3 0.01
ACGTcount: A:0.33, C:0.28, G:0.19, T:0.19
Consensus pattern (100 bp):
GGGGAATCAACACTTAGCAACCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCAC
CAATGAGTCGGGAATCAGCACTTAGCAACCCCTTG
Found at i:17865305 original size:102 final size:102
Alignment explanation
Indices: 17865188--17865416 Score: 318
Period size: 102 Copynumber: 2.2 Consensus size: 102
17865178 AGTGATTCAG
** * * *
17865188 GGAATCAGCACTTAGCAACCCCTTTGTCAATTAAGATACG-GTGGGATCAGCACTTAGCAACCAC
1 GGAATCAGCACTTAGCAACCCCTTTCACAATTAAAATACGAG-GGAATCAACACTTAGCAACCAC
*
17865252 CAATGAGTCGGGGAATGAGCACTTAGCAACCCCTTAGGA
65 CAATGAGTCGGGGAATCAGCACTTAGCAACCCCTT-GGA
* * * *
17865291 -GAATCCGCACTTAGCAACCCCCTTCACATTTAAAATACGAGGGAATCAACACTTAGTAACCACC
1 GGAATCAGCACTTAGCAACCCCTTTCACAATTAAAATACGAGGGAATCAACACTTAGCAACCACC
* *
17865355 AATGATTCGGGGAATCAGCATTTAGCAACCCCTTGGA
66 AATGAGTCGGGGAATCAGCACTTAGCAACCCCTTGGA
17865392 GGAATCAGCACTTAGCAACCCCTTT
1 GGAATCAGCACTTAGCAACCCCTTT
17865417 TATATTAAAT
Statistics
Matches: 110, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
101 3 0.03
102 106 0.96
103 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.21
Consensus pattern (102 bp):
GGAATCAGCACTTAGCAACCCCTTTCACAATTAAAATACGAGGGAATCAACACTTAGCAACCACC
AATGAGTCGGGGAATCAGCACTTAGCAACCCCTTGGA
Found at i:17873896 original size:23 final size:23
Alignment explanation
Indices: 17873865--17873920 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 23
17873855 CCTATAGAAA
*
17873865 ACTTCTGTTACTAGTACTACGAT
1 ACTTATGTTACTAGTACTACGAT
* * * *
17873888 ACTTATGTTATTATTACTTCGGT
1 ACTTATGTTACTAGTACTACGAT
*
17873911 ACTTTTGTTA
1 ACTTATGTTA
17873921 ATGACACTTT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.23, C:0.16, G:0.12, T:0.48
Consensus pattern (23 bp):
ACTTATGTTACTAGTACTACGAT
Found at i:17877776 original size:50 final size:50
Alignment explanation
Indices: 17877709--17877895 Score: 257
Period size: 50 Copynumber: 3.7 Consensus size: 50
17877699 ACTGCCAATA
* * ** * * * * *
17877709 CCATATCCCAGATATGGTCTTACATGGGAGTTCTAATATCGGTGCCCATG
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGATGCCAACG
* *
17877759 CCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGCTGCCAACG
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGATGCCAACG
* *
17877809 CCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCAATGCCAACG
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGATGCCAACG
17877859 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT
17877896 AATCTCAATA
Statistics
Matches: 122, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 122 1.00
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.26
Consensus pattern (50 bp):
CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGATGCCAACG
Found at i:17877934 original size:55 final size:50
Alignment explanation
Indices: 17877758--17877942 Score: 217
Period size: 50 Copynumber: 3.6 Consensus size: 50
17877748 CGGTGCCCAT
* ** **
17877758 GCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGCTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAATAACAAC
* **
17877808 GCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCAATGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAATAACAAC
** *
17877858 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATAATTAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATCTCAATAACAAC
*
17877911 GCCAATGGTCCCCGACATGGTCTTACATGGGA
1 GCC-AT-GTCCCAGACATGGTCTTACATGGGA
17877943 TCTCATTCCC
Statistics
Matches: 119, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
50 81 0.68
53 12 0.10
54 2 0.02
55 24 0.20
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.25
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAATAACAAC
Found at i:17884445 original size:26 final size:26
Alignment explanation
Indices: 17884415--17884489 Score: 89
Period size: 26 Copynumber: 2.9 Consensus size: 26
17884405 ACATATTTTC
*
17884415 TCAAAATTTTACTAGGGGCAAAATCG
1 TCAAAATTTTACTAGGGGTAAAATCG
* * * *
17884441 TCAAAATTTAACCAAGGGTAAAATTG
1 TCAAAATTTTACTAGGGGTAAAATCG
*
17884467 TCAAAATTTTGCT-GGGGTAAAAT
1 TCAAAATTTTACTAGGGGTAAAAT
17884490 AGGGATGAGA
Statistics
Matches: 40, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
25 9 0.22
26 31 0.77
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.29
Consensus pattern (26 bp):
TCAAAATTTTACTAGGGGTAAAATCG
Found at i:17888526 original size:37 final size:37
Alignment explanation
Indices: 17888476--17888554 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
17888466 TTATTACGAA
* * *
17888476 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
17888513 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
17888550 GTCTT
1 GTCTT
17888555 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:17888760 original size:47 final size:47
Alignment explanation
Indices: 17888717--17889242 Score: 836
Period size: 47 Copynumber: 11.1 Consensus size: 47
17888707 TTGGCCACTC
* * *
17888717 GGCCTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
* *
17888764 GGCCTTATCACATATATACACTTTCACATTCATTACATCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
* *
17888811 GGCCTTATCACACACATACACTTTCACATTCATCACGTCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
* *
17888858 GGCCTTATCACACACATACACTTTCACATTCATCACGTCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
*
17888905 GGCCTTATCACACACATACACTTTCACATTCATCACATCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
* * * *
17888952 GGCCCTATCACATAGATACACTTTCACATTCATCACGTCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
17888999 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
* *
17889046 GGCCCTATCACACATATACACTTTCACATTCATCACGTCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
* *
17889093 GGCCCTATCACACATATACACTTTCACATTCATCACGTCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
*
17889140 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
* * *
17889187 GGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCAC--ACATATACACTTTCACATTCATCACATCGGCTATTA
17889236 GGCCTTA
1 GGCCTTA
17889243 CTATCATTTC
Statistics
Matches: 453, Mismatches: 24, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
47 412 0.91
49 41 0.09
ACGTcount: A:0.29, C:0.31, G:0.10, T:0.31
Consensus pattern (47 bp):
GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
Found at i:17891104 original size:21 final size:21
Alignment explanation
Indices: 17891078--17891119 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
17891068 TCGGTCAAGA
17891078 AAAACAAAGAGGATGAAGCCT
1 AAAACAAAGAGGATGAAGCCT
17891099 AAAACAAAGAGGATGAAGCCT
1 AAAACAAAGAGGATGAAGCCT
17891120 TTTTTTTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.52, C:0.14, G:0.24, T:0.10
Consensus pattern (21 bp):
AAAACAAAGAGGATGAAGCCT
Found at i:17894049 original size:26 final size:26
Alignment explanation
Indices: 17894020--17894070 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
17894010 GGTTTAAATT
* * *
17894020 CTTACAAAATTAAAACTAGAGATTAC
1 CTTAAAAAACTAAAACTAGAAATTAC
*
17894046 CTTAAAAAACTAAAATTAGAAATTA
1 CTTAAAAAACTAAAACTAGAAATTA
17894071 AATTCATATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.55, C:0.12, G:0.06, T:0.27
Consensus pattern (26 bp):
CTTAAAAAACTAAAACTAGAAATTAC
Found at i:17894446 original size:16 final size:17
Alignment explanation
Indices: 17894425--17894456 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
17894415 GAATTTTTGC
17894425 TGTTAAATTT-TATAAT
1 TGTTAAATTTATATAAT
17894441 TGTTAAATTTATATAA
1 TGTTAAATTTATATAA
17894457 AAAATTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (17 bp):
TGTTAAATTTATATAAT
Found at i:17896125 original size:21 final size:21
Alignment explanation
Indices: 17896101--17896142 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
17896091 AGTTCTTTTA
17896101 AATTTAAGATATTTAAAAAAT
1 AATTTAAGATATTTAAAAAAT
* * *
17896122 AATTTAATATTTTTATAAAAT
1 AATTTAAGATATTTAAAAAAT
17896143 TTTAAAATTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (21 bp):
AATTTAAGATATTTAAAAAAT
Found at i:17900558 original size:13 final size:13
Alignment explanation
Indices: 17900540--17900568 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
17900530 AAGAGAGTGA
17900540 CATAACTTCTTGT
1 CATAACTTCTTGT
17900553 CATAACTTCTTGT
1 CATAACTTCTTGT
17900566 CAT
1 CAT
17900569 CGAGATGTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.24, C:0.24, G:0.07, T:0.45
Consensus pattern (13 bp):
CATAACTTCTTGT
Found at i:17901842 original size:13 final size:13
Alignment explanation
Indices: 17901824--17901861 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
17901814 ACATGAGCAT
17901824 GTGGACCACACGG
1 GTGGACCACACGG
*
17901837 GTGGACCACGCGG
1 GTGGACCACACGG
17901850 GTGGACCACACG
1 GTGGACCACACG
17901862 CCCCCTTCCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.21, C:0.32, G:0.39, T:0.08
Consensus pattern (13 bp):
GTGGACCACACGG
Found at i:17902530 original size:90 final size:90
Alignment explanation
Indices: 17902415--17902637 Score: 277
Period size: 90 Copynumber: 2.5 Consensus size: 90
17902405 AGTTTTTATC
* * *
17902415 TACAAATATGTTGTGCATTCACAACCATCTAGCAGCATATTAACCTACAACACTGGTGGTTCATC
1 TACAATTATGTTGTGCATCCACAACCATCTAGCAACATATTAACCTACAACACTGGTGGTTCATC
** *
17902480 CACCCATTTTCTGACAACTCTTATA
66 CACCCACATTCTGACAACTCTCATA
* * * * * *
17902505 TGCAATTTTGTTGTGTATCCACAACCATCTGGCAACATATTAACCTGCAACATTGGTGGTTCATC
1 TACAATTATGTTGTGCATCCACAACCATCTAGCAACATATTAACCTACAACACTGGTGGTTCATC
* *
17902570 CACCCACATTCTGACAGCTCTCATC
66 CACCCACATTCTGACAACTCTCATA
* * *
17902595 TACAATTATGTTGTGCA-CTCACAACCATTTGGCAACGTATTAA
1 TACAATTATGTTGTGCATC-CACAACCATCTAGCAACATATTAA
17902638 ACTGTAACTT
Statistics
Matches: 113, Mismatches: 19, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
89 1 0.01
90 112 0.99
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.31
Consensus pattern (90 bp):
TACAATTATGTTGTGCATCCACAACCATCTAGCAACATATTAACCTACAACACTGGTGGTTCATC
CACCCACATTCTGACAACTCTCATA
Found at i:17905487 original size:6 final size:6
Alignment explanation
Indices: 17905478--17905505 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
17905468 TAAATATAAA
17905478 ATATTT ATATTT ATATTT ATATTT ATAT
1 ATATTT ATATTT ATATTT ATATTT ATAT
17905506 AATAAAGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (6 bp):
ATATTT
Found at i:17910885 original size:3 final size:3
Alignment explanation
Indices: 17910877--17910910 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
17910867 ATAATTCGAG
17910877 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
17910911 CTAAATTCTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:17918505 original size:25 final size:25
Alignment explanation
Indices: 17918477--17918680 Score: 112
Period size: 25 Copynumber: 8.1 Consensus size: 25
17918467 CACTACGAAT
*
17918477 TTTCTAGAGAATTCGCTACAAAGGC
1 TTTCTAGAGAATTCGCCACAAAGGC
* *
17918502 TTTCTAGA-AGATTCACCGCAAAGGC
1 TTTCTAGAGA-ATTCGCCACAAAGGC
* * *
17918527 TTTCCA-AAAATTTGCCACAAAGGC
1 TTTCTAGAGAATTCGCCACAAAGGC
* ** * *
17918551 TTTTCTAAAGAATTTTCCAAAAAAGC
1 -TTTCTAGAGAATTCGCCACAAAGGC
* * *
17918577 TTTCCAGAGAATTCGCCATAAAAGCC
1 TTTCTAGAGAATTCGCCA-CAAAGGC
* * * *
17918603 TTT-TAGAGAATTATTGACA-AAAAGT
1 TTTCTAGAGAA-T-TCGCCACAAAGGC
* *
17918628 TTTCTAAAGAATTTGCC-CGAAAGGC
1 TTTCTAGAGAATTCGCCAC-AAAGGC
* * *
17918653 TTTTTAGAGAATTTGTCACAAAGGC
1 TTTCTAGAGAATTCGCCACAAAGGC
17918678 TTT
1 TTT
17918681 TCAGAAATTC
Statistics
Matches: 137, Mismatches: 31, Indels: 22
0.72 0.16 0.12
Matches are distributed among these distances:
24 18 0.13
25 85 0.62
26 30 0.22
27 4 0.03
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.30
Consensus pattern (25 bp):
TTTCTAGAGAATTCGCCACAAAGGC
Found at i:17918674 original size:51 final size:49
Alignment explanation
Indices: 17918525--17918674 Score: 142
Period size: 51 Copynumber: 3.0 Consensus size: 49
17918515 CACCGCAAAG
*
17918525 GCTTTCCAAA-AATTTGCCACAAAGGCTTTTCTAAAGAATTTTC-CAAAAAA
1 GCTTTCCAAAGAATTTGCC-CAAAGGCTTTT-TAGAGAATTTTCAC-AAAAA
* * * * * *
17918575 GCTTTCCAGAGAATTCGCCATAAAAGCCTTTTAGAGAATTATTGACAAAAA
1 GCTTTCCAAAGAATTTGCC-CAAAGGCTTTTTAGAGAATT-TTCACAAAAA
* *
17918626 GTTTTCTAAAGAATTTGCCCGAAAGGCTTTTTAGAGAATTTGTCACAAA
1 GCTTTCCAAAGAATTTGCCC-AAAGGCTTTTTAGAGAATTT-TCACAAA
17918675 GGCTTTTCAG
Statistics
Matches: 80, Mismatches: 15, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
50 18 0.22
51 61 0.76
52 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31
Consensus pattern (49 bp):
GCTTTCCAAAGAATTTGCCCAAAGGCTTTTTAGAGAATTTTCACAAAAA
Found at i:17920227 original size:9 final size:8
Alignment explanation
Indices: 17920207--17920257 Score: 56
Period size: 9 Copynumber: 6.6 Consensus size: 8
17920197 TTAAAATAAA
17920207 TTTATA-T
1 TTTATAGT
17920214 TTTATTAGT
1 TTTA-TAGT
17920223 TTTATA--
1 TTTATAGT
17920229 TTTATA-T
1 TTTATAGT
17920236 TTTATAGTT
1 TTTATAG-T
17920245 TTTATAGT
1 TTTATAGT
17920253 TTTAT
1 TTTAT
17920258 TTTATTTTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
6 6 0.15
7 10 0.26
8 10 0.26
9 13 0.33
ACGTcount: A:0.25, C:0.00, G:0.06, T:0.69
Consensus pattern (8 bp):
TTTATAGT
Found at i:17920234 original size:22 final size:23
Alignment explanation
Indices: 17920206--17920263 Score: 86
Period size: 22 Copynumber: 2.6 Consensus size: 23
17920196 TTTAAAATAA
17920206 ATTTATATTTTATTAG-TTTTAT
1 ATTTATATTTTATTAGTTTTTAT
17920228 ATTTATATTTTA-TAGTTTTTAT
1 ATTTATATTTTATTAGTTTTTAT
17920250 AGTTT-TATTTTATT
1 A-TTTATATTTTATT
17920264 TTATTTAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
21 3 0.09
22 26 0.79
23 4 0.12
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.69
Consensus pattern (23 bp):
ATTTATATTTTATTAGTTTTTAT
Found at i:17920327 original size:25 final size:26
Alignment explanation
Indices: 17920292--17920347 Score: 80
Period size: 25 Copynumber: 2.2 Consensus size: 26
17920282 TAAATTATTT
*
17920292 TATTTTCATAATTATGTAATTTTT-AA
1 TATTTTCATAATTAT-AAATTTTTGAA
17920318 TATTTT-ATAATTATAAATTTTTGAA
1 TATTTTCATAATTATAAATTTTTGAA
17920343 TATTT
1 TATTT
17920348 AAAATAATGA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 7 0.25
25 15 0.54
26 6 0.21
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.59
Consensus pattern (26 bp):
TATTTTCATAATTATAAATTTTTGAA
Found at i:17920809 original size:7 final size:7
Alignment explanation
Indices: 17920797--17920823 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
17920787 TATAGTAATA
17920797 TAAAATT
1 TAAAATT
17920804 TAAAATT
1 TAAAATT
17920811 TAAAATT
1 TAAAATT
17920818 TAAAAT
1 TAAAAT
17920824 ACAAATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
TAAAATT
Found at i:17921409 original size:19 final size:19
Alignment explanation
Indices: 17921385--17921435 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
17921375 AAAAGATAAT
17921385 ATATATTTATATTTTTATA
1 ATATATTTATATTTTTATA
*
17921404 ATATATATACTA-TTTTATA
1 ATATATTTA-TATTTTTATA
17921423 AT-TATTTATATTT
1 ATATATTTATATTT
17921436 AATTATGTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
17 2 0.07
18 7 0.25
19 17 0.61
20 2 0.07
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (19 bp):
ATATATTTATATTTTTATA
Found at i:17923568 original size:26 final size:28
Alignment explanation
Indices: 17923539--17923598 Score: 72
Period size: 26 Copynumber: 2.2 Consensus size: 28
17923529 TCAAAACACC
*
17923539 TAAATGCAATACAATAA-AT-ATTACAA
1 TAAATACAATACAATAATATCATTACAA
* *
17923565 TAAATATAGTACAATAATATCATTACAA
1 TAAATACAATACAATAATATCATTACAA
17923593 -AAATAC
1 TAAATAC
17923599 TAAACATTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
26 14 0.50
27 7 0.25
28 7 0.25
ACGTcount: A:0.57, C:0.12, G:0.03, T:0.28
Consensus pattern (28 bp):
TAAATACAATACAATAATATCATTACAA
Found at i:17923579 original size:14 final size:12
Alignment explanation
Indices: 17923548--17923597 Score: 57
Period size: 12 Copynumber: 3.9 Consensus size: 12
17923538 CTAAATGCAA
17923548 TACAATAAATAT
1 TACAATAAATAT
17923560 TACAATAAATAT
1 TACAATAAATAT
17923572 AGTACAATAATATCAT
1 --TACAATAA-AT-AT
17923588 TACAA-AAATA
1 TACAATAAATA
17923598 CTAAACATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
11 1 0.03
12 14 0.41
13 2 0.06
14 13 0.38
15 2 0.06
16 2 0.06
ACGTcount: A:0.58, C:0.10, G:0.02, T:0.30
Consensus pattern (12 bp):
TACAATAAATAT
Found at i:17923970 original size:38 final size:35
Alignment explanation
Indices: 17923928--17924015 Score: 95
Period size: 39 Copynumber: 2.3 Consensus size: 35
17923918 TAATTAAAAA
* *
17923928 AATTCAAAATCTCAATAAATAAAAAACATTTGTCAAAT
1 AATTCAAAAACCCAATAAAT-AAAAA-A-TTGTCAAAT
17923966 AATTCAAAAAAAAACCCAATAAATAAAAAATTGTCAAAT
1 AATTC----AAAAACCCAATAAATAAAAAATTGTCAAAT
17924005 AATTCAAAAAC
1 AATTCAAAAAC
17924016 AACAAAAAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 11
0.77 0.04 0.19
Matches are distributed among these distances:
35 6 0.14
38 5 0.11
39 14 0.32
40 1 0.02
41 5 0.11
42 13 0.30
ACGTcount: A:0.60, C:0.14, G:0.02, T:0.24
Consensus pattern (35 bp):
AATTCAAAAACCCAATAAATAAAAAATTGTCAAAT
Found at i:17924228 original size:31 final size:32
Alignment explanation
Indices: 17924159--17924248 Score: 85
Period size: 31 Copynumber: 2.8 Consensus size: 32
17924149 TTTTTTACCC
*
17924159 TTTTTTTAAACCCTAAACAAAACCCTTTAATA
1 TTTTTTTAAACCCTAAACAAAACCCTCTAATA
* * *
17924191 TATTTTT-AACCCTAAACAAATCCC-CTAATC
1 TTTTTTTAAACCCTAAACAAAACCCTCTAATA
*
17924221 TCTTTTTTCCAAACCCTAATAAAAAACC
1 T-TTTTTT--AAACCCTAA-ACAAAACC
17924249 TTTAATCCCT
Statistics
Matches: 46, Mismatches: 7, Indels: 7
0.77 0.12 0.12
Matches are distributed among these distances:
30 5 0.11
31 21 0.46
32 6 0.13
34 8 0.17
35 6 0.13
ACGTcount: A:0.39, C:0.27, G:0.00, T:0.34
Consensus pattern (32 bp):
TTTTTTTAAACCCTAAACAAAACCCTCTAATA
Found at i:17925353 original size:388 final size:388
Alignment explanation
Indices: 17924605--17925763 Score: 1952
Period size: 388 Copynumber: 3.0 Consensus size: 388
17924595 GACACATAGC
* * *
17924605 CTTCACTCTAATTTTTTAGTTTTCCTTTTTTTTTTCATTTTCATTTTGTATTTTGTTTTGTATTT
1 CTTCACCCTAATTTTTCAGTTTTCC-TTTTTTTTTCTTTTTCATTTTGTATTTTGTTTTGTATTT
*
17924670 GTACTCGGGTTGGGTATTCGGGTTTTTTAATGCCGCC-ATCAACAAGGATGCACCATTAATTTTT
65 GTACTCGGGTTGGGTATTCGGGTTTTTTAATGCCGCCTATCAACAAGGCTGCACCATTAATTTTT
17924734 TTTAACTAAATCCGACGGGTGTGAGAAAATAGAGGTGGTGCTGCCTCTGCACCACCCTCCACCAC
130 TTTAACTAAATCCGACGGGTGTGAGAAAATAG-GGTGGTGCTGCCTCTGCACCACCCTCCACCAC
**
17924799 CCTTGGTATACCATTTTCGTAAATAATTCAGCTCACATATTATTTTAGATATTTTTAAATTTTTT
194 CCTTGGTATACCATTTTCGTAAATAATTCAGCTCGTATATTATTTTAGATATTTTTAAATTTTTT
*
17924864 ATATTATATATGTAAAAAAGCCACTAACTTACAAGTTGCTCAAAATACTAGTAAGGCATTTCACC
259 ATATTATATATGTAAAAAAGCCACTAACTTACAAGTTGCTCAAAATACTAGTAAGACATTTCACC
*
17924929 AAAAAAATAAATACTAATAAGACAAAAATCATAGAATAAATATGGCCTTACAATGGAATTGCAAA
324 AAAAAAATAAATACTAATAAGACAAAAATCATAGAATAAATATGGCCTTGCAATGGAATTGCAAA
17924994 CTTCACCCTAATTTTTCAGTTTTCC-TTTTTTTTCTTTTTCATTTTGTATTTTGTTTTGTATTTG
1 CTTCACCCTAATTTTTCAGTTTTCCTTTTTTTTTCTTTTTCATTTTGTATTTTGTTTTGTATTTG
*
17925058 TACTCGGGTTGGGTATTCGGGTTTTTTAATGCCGCCTATCAACAAGGCTGAACCATTAATTTTTT
66 TACTCGGGTTGGGTATTCGGGTTTTTTAATGCCGCCTATCAACAAGGCTGCACCATTAATTTTTT
* *
17925123 TTAACTAAATCCGACGGGTGTGAGAAAATAGGGGTGGTGCTGCCTCTGCAGCACCCTCCACCACT
131 TTAACTAAATCCGACGGGTGTGAGAAAATA-GGGTGGTGCTGCCTCTGCACCACCCTCCACCACC
*
17925188 CTTGGTATACCATTTTCGTAAATAATTTAGCTCGTATATTATTTTAGATATTTTTAAA-TTTTTA
195 CTTGGTATACCATTTTCGTAAATAATTCAGCTCGTATATTATTTTAGATATTTTTAAATTTTTTA
17925252 TATTATATATGTAAAAAAGCCACTAACTTACAAGTTGCTCAAAATACTAGTAAGACATTTCACCA
260 TATTATATATGTAAAAAAGCCACTAACTTACAAGTTGCTCAAAATACTAGTAAGACATTTCACC-
*
17925317 AAAAAAATAAATACTAATAAGACAAAAATTATAGAATAAATATGGCCTTGCAATGGAATTGCAAA
324 AAAAAAATAAATACTAATAAGACAAAAATCATAGAATAAATATGGCCTTGCAATGGAATTGC--A
17925382 CAA
387 -AA
17925385 CTTCACCCTAATTTTTCAGTTTTCCTTTTTTTTTTCTTTTTCATTTTGTATTTTGTTTTGTATTT
1 CTTCACCCTAATTTTTCAGTTTTCC-TTTTTTTTTCTTTTTCATTTTGTATTTTGTTTTGTATTT
**
17925450 GTACTTAGGTTGGGTATTCGGGTTTTTTAATGCCGCCTATCAACAAGGCTGCACCATTAAATTTT
65 GTACTCGGGTTGGGTATTCGGGTTTTTTAATGCCGCCTATCAACAAGGCTGCACCATT-AATTTT
*
17925515 TTTTAACTAAATCCGACGGGTGTGAGAAAATA-------G--G---CAGCACCACCCTCCACCAC
129 TTTTAACTAAATCCGACGGGTGTGAGAAAATAGGGTGGTGCTGCCTCTGCACCACCCTCCACCAC
* *
17925568 CCTTGGTATACCATTTTCGTAAATAATTCAGCTAGTATATTTTTTTAGATATTTTTAAATTTTTT
194 CCTTGGTATACCATTTTCGTAAATAATTCAGCTCGTATATTATTTTAGATATTTTTAAATTTTTT
*
17925633 ATATTATATATGTAAAAAAGTCACTAACTTACAAGTTGCTCAAAATACTAGTAAGACATTTCACC
259 ATATTATATATGTAAAAAAGCCACTAACTTACAAGTTGCTCAAAATACTAGTAAGACATTTCACC
*
17925698 AAAAAAATAAATACTAATAAGACAAAAATCATAGAATAAATATGGCCTTGCAATGAAATTGCAAA
324 AAAAAAATAAATACTAATAAGACAAAAATCATAGAATAAATATGGCCTTGCAATGGAATTGCAAA
17925763 C
1 C
17925764 AATTTGCAAT
Statistics
Matches: 735, Mismatches: 25, Indels: 31
0.93 0.03 0.04
Matches are distributed among these distances:
378 3 0.00
379 1 0.00
381 132 0.18
382 69 0.09
384 1 0.00
386 1 0.00
387 143 0.19
388 202 0.27
389 24 0.03
390 1 0.00
391 27 0.04
393 93 0.13
394 38 0.05
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.38
Consensus pattern (388 bp):
CTTCACCCTAATTTTTCAGTTTTCCTTTTTTTTTCTTTTTCATTTTGTATTTTGTTTTGTATTTG
TACTCGGGTTGGGTATTCGGGTTTTTTAATGCCGCCTATCAACAAGGCTGCACCATTAATTTTTT
TTAACTAAATCCGACGGGTGTGAGAAAATAGGGTGGTGCTGCCTCTGCACCACCCTCCACCACCC
TTGGTATACCATTTTCGTAAATAATTCAGCTCGTATATTATTTTAGATATTTTTAAATTTTTTAT
ATTATATATGTAAAAAAGCCACTAACTTACAAGTTGCTCAAAATACTAGTAAGACATTTCACCAA
AAAAATAAATACTAATAAGACAAAAATCATAGAATAAATATGGCCTTGCAATGGAATTGCAAA
Found at i:17934310 original size:4 final size:4
Alignment explanation
Indices: 17934301--17934360 Score: 102
Period size: 4 Copynumber: 15.0 Consensus size: 4
17934291 CTACAAATAT
17934301 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
17934349 ATGC ATGC ATAC
1 ATAC ATAC ATAC
17934361 CCTTCGTATG
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 54 1.00
ACGTcount: A:0.47, C:0.25, G:0.03, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:17939448 original size:15 final size:15
Alignment explanation
Indices: 17939428--17939461 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
17939418 GAGGTAGTAC
17939428 AACAGAACAAAGCAA
1 AACAGAACAAAGCAA
* *
17939443 AACAGAACAGAGCAG
1 AACAGAACAAAGCAA
17939458 AACA
1 AACA
17939462 ATGTAATTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.62, C:0.21, G:0.18, T:0.00
Consensus pattern (15 bp):
AACAGAACAAAGCAA
Found at i:17939513 original size:20 final size:20
Alignment explanation
Indices: 17939476--17939514 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
17939466 AATTCAAATA
*
17939476 GAACAGAACCGAATAGAGCG
1 GAACAGAACCGAACAGAGCG
* *
17939496 GAACAGAACGGAGCAGAGC
1 GAACAGAACCGAACAGAGC
17939515 AAAACAGAGC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.44, C:0.21, G:0.33, T:0.03
Consensus pattern (20 bp):
GAACAGAACCGAACAGAGCG
Found at i:17942628 original size:49 final size:50
Alignment explanation
Indices: 17942561--17942707 Score: 125
Period size: 53 Copynumber: 2.8 Consensus size: 50
17942551 CTGGGAACCA
* * * * *
17942561 AGTGTCAAGACCGTAGGCTAACAT-CCCTCAGAAACACACCTCGGCACTG
1 AGTGCCAAGCCCGAAGGCTAACATCCCCCCAGAAACACACCTCAGCACTG
* * * **
17942610 AGTGCCAAGCCCGAAGGCTTTACATCCGCCCCCGGAAGCACACCTCAGTGCTG
1 AGTGCCAAGCCCGAAGGC-TAACAT-C-CCCCCAGAAACACACCTCAGCACTG
* *
17942663 AGTGCCAAGCCCGAAGGCTTTACATCCACCCTCGGAAACACACCT
1 AGTGCCAAGCCCGAAGGC-TAACATCC-CCC-CAGAAACACACCT
17942708 GAATTACTGT
Statistics
Matches: 81, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
49 15 0.19
50 5 0.06
51 1 0.01
52 4 0.05
53 56 0.69
ACGTcount: A:0.27, C:0.36, G:0.21, T:0.16
Consensus pattern (50 bp):
AGTGCCAAGCCCGAAGGCTAACATCCCCCCAGAAACACACCTCAGCACTG
Found at i:17942653 original size:53 final size:53
Alignment explanation
Indices: 17942591--17942707 Score: 180
Period size: 53 Copynumber: 2.2 Consensus size: 53
17942581 ACATCCCTCA
* *
17942591 GAAACACACCTCGGCACTGAGTGCCAAGCCCGAAGGCTTTACATCCGCCCCCG
1 GAAACACACCTCAGCACTGAGTGCCAAGCCCGAAGGCTTTACATCCACCCCCG
* ** *
17942644 GAAGCACACCTCAGTGCTGAGTGCCAAGCCCGAAGGCTTTACATCCACCCTCG
1 GAAACACACCTCAGCACTGAGTGCCAAGCCCGAAGGCTTTACATCCACCCCCG
17942697 GAAACACACCT
1 GAAACACACCT
17942708 GAATTACTGT
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
53 57 1.00
ACGTcount: A:0.26, C:0.38, G:0.21, T:0.15
Consensus pattern (53 bp):
GAAACACACCTCAGCACTGAGTGCCAAGCCCGAAGGCTTTACATCCACCCCCG
Found at i:17949444 original size:37 final size:37
Alignment explanation
Indices: 17949394--17949469 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
17949384 ATCACCTTTT
17949394 TCTCTTTGTCCTCATTTATAGCTAACCTGAGTGTTAG
1 TCTCTTTGTCCTCATTTATAGCTAACCTGAGTGTTAG
17949431 TCTCTTTGTCCTCATTTATAGCTAACCTGAGTGTTAG
1 TCTCTTTGTCCTCATTTATAGCTAACCTGAGTGTTAG
17949468 TC
1 TC
17949470 AAGAATCATC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.18, C:0.22, G:0.16, T:0.43
Consensus pattern (37 bp):
TCTCTTTGTCCTCATTTATAGCTAACCTGAGTGTTAG
Found at i:17950139 original size:6 final size:7
Alignment explanation
Indices: 17950120--17950146 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
17950110 GAAGTGAAAT
17950120 ACAAAAA
1 ACAAAAA
17950127 ACAAAAA
1 ACAAAAA
17950134 ACAAAAA
1 ACAAAAA
17950141 ACAAAA
1 ACAAAA
17950147 GAAAAATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (7 bp):
ACAAAAA
Found at i:17952926 original size:131 final size:131
Alignment explanation
Indices: 17952692--17952953 Score: 524
Period size: 131 Copynumber: 2.0 Consensus size: 131
17952682 TTTAAATACA
17952692 AACAGGAAGTATAATTTTCATCCAAGCAATAGAAAGCAATGTTTTTGAAAGCATTAAAGATTTAT
1 AACAGGAAGTATAATTTTCATCCAAGCAATAGAAAGCAATGTTTTTGAAAGCATTAAAGATTTAT
17952757 CCACAAGATTGAACAAGTTCCTACTCTAATCGCAAAAGAAGCAACTGCAACGCAACCATGCCAAG
66 CCACAAGATTGAACAAGTTCCTACTCTAATCGCAAAAGAAGCAACTGCAACGCAACCATGCCAAG
17952822 C
131 C
17952823 AACAGGAAGTATAATTTTCATCCAAGCAATAGAAAGCAATGTTTTTGAAAGCATTAAAGATTTAT
1 AACAGGAAGTATAATTTTCATCCAAGCAATAGAAAGCAATGTTTTTGAAAGCATTAAAGATTTAT
17952888 CCACAAGATTGAACAAGTTCCTACTCTAATCGCAAAAGAAGCAACTGCAACGCAACCATGCCAAG
66 CCACAAGATTGAACAAGTTCCTACTCTAATCGCAAAAGAAGCAACTGCAACGCAACCATGCCAAG
17952953 C
131 C
17952954 TTGACCATTT
Statistics
Matches: 131, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
131 131 1.00
ACGTcount: A:0.41, C:0.21, G:0.15, T:0.23
Consensus pattern (131 bp):
AACAGGAAGTATAATTTTCATCCAAGCAATAGAAAGCAATGTTTTTGAAAGCATTAAAGATTTAT
CCACAAGATTGAACAAGTTCCTACTCTAATCGCAAAAGAAGCAACTGCAACGCAACCATGCCAAG
C
Found at i:17956442 original size:19 final size:18
Alignment explanation
Indices: 17956401--17956439 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
17956391 TCAAGTAAAG
*
17956401 AAAGACAAAAACGCAAAT
1 AAAGACAAAAACACAAAT
17956419 AAAGACAAAAACACAAAT
1 AAAGACAAAAACACAAAT
17956437 AAA
1 AAA
17956440 AGATGACCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.72, C:0.15, G:0.08, T:0.05
Consensus pattern (18 bp):
AAAGACAAAAACACAAAT
Found at i:17962129 original size:51 final size:51
Alignment explanation
Indices: 17962047--17962431 Score: 351
Period size: 51 Copynumber: 7.6 Consensus size: 51
17962037 GATGAACACG
*
17962047 TGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATAATT-GTCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAAT-ATTGGTCACA
* * * * * * * *
17962098 TGTCTAGTACTAAGTGAAGGCTACAATGTGTACCGAGAAGCT-TTGGTCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAA-ATATTGGTCACA
* *
17962149 TGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGA-TGGTCATA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAAT-ATTGGTCACA
* * * *
17962200 TGTGTAGTACTAAGTGAAGGCTACTATGTGTATCGA-AAAGTTTTGGTCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAA-TATTGGTCACA
* * * * * *
17962251 TGTGTAGTACTATGTGAAGGCTACTACATGAACCG-TAAAAACTTGATCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATA-TTGGTCACA
* * * * *
17962302 TGTGTAGTACTATGTGGAGGCTACTACGTG--CCG-TAAAAACTTGATCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATA-TTGGTCACA
* * *
17962351 TGTGTAGTACTATGTGAAGGCTACTACGTG-AACTG-TAAA-ACTTGATCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATC-GATAAATA-TTGGTCACA
*
17962401 TGTGTAGTACTATGTGGAGGCTACTACGTGT
1 TGTGTAGTACTATGTGAAGGCTACTACGTGT
17962432 TTTGAATGAT
Statistics
Matches: 285, Mismatches: 38, Indels: 22
0.83 0.11 0.06
Matches are distributed among these distances:
49 48 0.17
50 47 0.16
51 189 0.66
52 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.31
Consensus pattern (51 bp):
TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATATTGGTCACA
Found at i:17962219 original size:102 final size:102
Alignment explanation
Indices: 17962043--17962431 Score: 452
Period size: 102 Copynumber: 3.8 Consensus size: 102
17962033 TATCGATGAA
* * * *
17962043 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATAATTGTCACATGTCTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATAATGGTCACATGTGTAGTAC
* *
17962108 TAAGTGAAGGCTACAATGTGTACCGAGAAGCTTTGGT
66 TAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGGT
* *
17962145 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCATATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATAATGGTCACATGTGTAGTAC
* *
17962210 TAAGTGAAGGCTACTATGTGTATCGAAAAGTTTTGGT
66 TAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGGT
* * * *
17962247 CACGTGTGTAGTACTATGTGAAGGCTACTACATGAACCG-TAAA-AACTTGATCACGTGTGTAGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATAA--TGGTCACATGTGTAGT
* * * * *
17962310 ACTATGTGGAGGCTACTACGTG--CCGTAAAAAC-TTGAT
64 ACTAAGTGAAGGCTACTATGTGTACCG-AAAAGCTTTGGT
* * *
17962347 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAA-CTG-TAAA-ACTTGATCACGTGTGTAGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATC-GATAAATA-ATGGTCACATGTGTAGT
* * *
17962409 ACTATGTGGAGGCTACTACGTGT
64 ACTAAGTGAAGGCTACTATGTGT
17962432 TTTGAATGAT
Statistics
Matches: 256, Mismatches: 25, Indels: 14
0.87 0.08 0.05
Matches are distributed among these distances:
99 39 0.15
100 48 0.19
101 8 0.03
102 161 0.63
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (102 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATAATGGTCACATGTGTAGTAC
TAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGGT
Found at i:17962302 original size:153 final size:149
Alignment explanation
Indices: 17962047--17962427 Score: 412
Period size: 153 Copynumber: 2.5 Consensus size: 149
17962037 GATGAACACG
* * * *
17962047 TGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATAATT-GTCACATGTCTAGTACTAA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA-AAAT-ATTGGTCACGTGTGTAGTACTAT
* ** * * * *
17962111 GTGAAGGCTACAATGTGTACCGAGAAGCTTTGGTCACGTGTGTAGTACTATGTGAAGGCTACTAC
64 GTGAAGGCTACTACATGAACCGAAAAACTTTGATCACGTGTGTAGTACTATGTGAAGGCTACTAC
* * * *
17962176 GTGAATCGATAAATGA-TGGTCATA
129 GTG--CCG-TAAA-AACTGATCACA
* * *
17962200 TGTGTAGTACTAAGTGAAGGCTACTATGTGTATCGAAAAGTTTTGGTCACGTGTGTAGTACTATG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAAAA-TATTGGTCACGTGTGTAGTACTATG
*
17962265 TGAAGGCTACTACATGAACCGTAAAAAC-TTGATCACGTGTGTAGTACTATGTGGAGGCTACTAC
65 TGAAGGCTACTACATGAACCG-AAAAACTTTGATCACGTGTGTAGTACTATGTGAAGGCTACTAC
*
17962329 GTGCCGTAAAAACTTGATCACG
129 GTGCCGTAAAAAC-TGATCACA
* * *
17962351 TGTGTAGTACTATGTGAAGGCTACTACGTG-AACTGTAAAA-CTTGATCACGTGTGTAGTACTAT
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATC-G-AAAATATTGGTCACGTGTGTAGTACTAT
*
17962414 GTGGAGGCTACTAC
64 GTGAAGGCTACTAC
17962428 GTGTTTTGAA
Statistics
Matches: 195, Mismatches: 26, Indels: 17
0.82 0.11 0.07
Matches are distributed among these distances:
149 1 0.01
150 40 0.21
151 36 0.18
152 9 0.05
153 105 0.54
154 4 0.02
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (149 bp):
TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAAAATATTGGTCACGTGTGTAGTACTATGT
GAAGGCTACTACATGAACCGAAAAACTTTGATCACGTGTGTAGTACTATGTGAAGGCTACTACGT
GCCGTAAAAACTGATCACA
Found at i:17964867 original size:68 final size:69
Alignment explanation
Indices: 17964734--17964867 Score: 189
Period size: 68 Copynumber: 2.0 Consensus size: 69
17964724 CTTTAAACTA
* *
17964734 AATCACTTTAATATTAAATTAATATAATATTTATCAAGATAAACAGTAAATTAAATTTAATATTA
1 AATCACTTTAATATTAAATTAATAAAATATCTATCAAGATAAACAGTAAATTAAATTTAATATTA
17964799 AGAT
66 AGAT
* * ** * *
17964803 AATCACTTTAATATTAAATTAATAAAATA-CTATTAGGATAAGTATTAAATTAAATTTCATATTA
1 AATCACTTTAATATTAAATTAATAAAATATCTATCAAGATAAACAGTAAATTAAATTTAATATTA
17964867 A
66 A
17964868 ACTATTAAAA
Statistics
Matches: 57, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
68 29 0.51
69 28 0.49
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.40
Consensus pattern (69 bp):
AATCACTTTAATATTAAATTAATAAAATATCTATCAAGATAAACAGTAAATTAAATTTAATATTA
AGAT
Found at i:17971593 original size:24 final size:24
Alignment explanation
Indices: 17971566--17971620 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
17971556 ATATATCACA
*
17971566 ATTATAA-AATTACATAATATAAAT
1 ATTATAACAATTACATAA-AAAAAT
*
17971590 ATTATAGACAATTATATAAAAAAAT
1 ATTATA-ACAATTACATAAAAAAAT
17971615 A-TATAA
1 ATTATAA
17971621 TGAGATAGGT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 1 0.04
24 10 0.37
25 7 0.26
26 9 0.33
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.35
Consensus pattern (24 bp):
ATTATAACAATTACATAAAAAAAT
Found at i:17973288 original size:3 final size:3
Alignment explanation
Indices: 17973280--17973348 Score: 138
Period size: 3 Copynumber: 23.0 Consensus size: 3
17973270 CACTTAGCTT
17973280 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
17973328 GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA
17973349 AGCCAATTTC
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 66 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:17974070 original size:3 final size:3
Alignment explanation
Indices: 17974062--17974094 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
17974052 TCTCCATTTC
17974062 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
17974095 ACTACTACTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:17974918 original size:30 final size:31
Alignment explanation
Indices: 17974852--17974920 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
17974842 ATGTTAGTGG
*
17974852 GTGACTAATTTGTTACTTTTCGATAACGTTA
1 GTGACTGATTTGTTACTTTTCGATAACGTTA
* *
17974883 GTGACTGATTTGTTATTTTTTGA-AA-GTTAA
1 GTGACTGATTTGTTACTTTTCGATAACGTT-A
17974913 GTGACTGA
1 GTGACTGA
17974921 GTTGAAAGTT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 3 0.09
30 11 0.32
31 20 0.59
ACGTcount: A:0.26, C:0.09, G:0.20, T:0.45
Consensus pattern (31 bp):
GTGACTGATTTGTTACTTTTCGATAACGTTA
Found at i:17983762 original size:24 final size:24
Alignment explanation
Indices: 17983709--17983763 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
17983699 ATGGAGATGA
* * *
17983709 AAAACTAA-AACCCTGAAAACTTG
1 AAAACAAAGAACCCTCAAAACGTG
17983732 AAAACAAAGAACCCTCAAAACGT-
1 AAAACAAAGAACCCTCAAAACGTG
17983755 AAATACAAA
1 AAA-ACAAA
17983764 ATTCTCTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 10 0.37
24 17 0.63
ACGTcount: A:0.58, C:0.22, G:0.07, T:0.13
Consensus pattern (24 bp):
AAAACAAAGAACCCTCAAAACGTG
Found at i:17984318 original size:6 final size:6
Alignment explanation
Indices: 17984307--17984346 Score: 80
Period size: 6 Copynumber: 6.7 Consensus size: 6
17984297 GTAAAACATA
17984307 ATAATT ATAATT ATAATT ATAATT ATAATT ATAATT ATAA
1 ATAATT ATAATT ATAATT ATAATT ATAATT ATAATT ATAA
17984347 AAAGTCACTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (6 bp):
ATAATT
Found at i:17997061 original size:17 final size:17
Alignment explanation
Indices: 17997039--17997073 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
17997029 GGACGAAAAT
17997039 AGGCCATTTTCCAGGCC
1 AGGCCATTTTCCAGGCC
17997056 AGGCCATTTTCCAGGCC
1 AGGCCATTTTCCAGGCC
17997073 A
1 A
17997074 CATTTCTCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.20, C:0.34, G:0.23, T:0.23
Consensus pattern (17 bp):
AGGCCATTTTCCAGGCC
Found at i:17998096 original size:27 final size:27
Alignment explanation
Indices: 17998065--17998149 Score: 77
Period size: 27 Copynumber: 3.2 Consensus size: 27
17998055 CGGAGAGTCA
17998065 TTAATTTGGAAGCTCATAAAAGAGCCT
1 TTAATTTGGAAGCTCATAAAAGAGCCT
*** * *
17998092 TTAA-TTGAGAAGCTC--CGGAGATCCA
1 TTAATTTG-GAAGCTCATAAAAGAGCCT
**
17998117 TTAATCAGGAAGCTCATAAAAGAGCCT
1 TTAATTTGGAAGCTCATAAAAGAGCCT
17998144 TTAATT
1 TTAATT
17998150 GAGAACCTCT
Statistics
Matches: 41, Mismatches: 13, Indels: 8
0.66 0.21 0.13
Matches are distributed among these distances:
25 16 0.39
26 4 0.10
27 21 0.51
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.28
Consensus pattern (27 bp):
TTAATTTGGAAGCTCATAAAAGAGCCT
Found at i:17998119 original size:52 final size:52
Alignment explanation
Indices: 17998055--17998187 Score: 178
Period size: 52 Copynumber: 2.6 Consensus size: 52
17998045 CAAAAAGATA
**
17998055 CGGAGAGTCATTAATTTGGAAGCTCATAAAAGAGCCTTTAATTGAGAAGCTC
1 CGGAGAGTCATTAATCAGGAAGCTCATAAAAGAGCCTTTAATTGAGAAGCTC
*
17998107 CGGAGA-TCCATTAATCAGGAAGCTCATAAAAGAGCCTTTAATTGAGAACCTC
1 CGGAGAGT-CATTAATCAGGAAGCTCATAAAAGAGCCTTTAATTGAGAAGCTC
** * * *
17998159 TAGAGAGCCATTTATCAGGACGCTCATAA
1 CGGAGAGTCATTAATCAGGAAGCTCATAA
17998188 GAGCTGCGGT
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
51 1 0.01
52 70 0.99
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (52 bp):
CGGAGAGTCATTAATCAGGAAGCTCATAAAAGAGCCTTTAATTGAGAAGCTC
Found at i:17998332 original size:24 final size:24
Alignment explanation
Indices: 17998230--17998333 Score: 75
Period size: 24 Copynumber: 4.3 Consensus size: 24
17998220 TACAACCAAT
*
17998230 CAGGATGCTCA-GAAGAGCTATTAA
1 CAGGATGCTCATG-AGAGCTAATAA
** * * * *
17998254 TGGGAAGCTCGTGAGAGCTATTTAT
1 CAGGATGCTCATGAGAGCTA-ATAA
* * * *
17998279 CAGGAAGCTCAAGAGAGCCAATAT
1 CAGGATGCTCATGAGAGCTAATAA
17998303 CAGGATGCTCATGAGAGCTAATAA
1 CAGGATGCTCATGAGAGCTAATAA
*
17998327 CGGGATG
1 CAGGATG
17998334 TTCTTTTGAG
Statistics
Matches: 62, Mismatches: 16, Indels: 4
0.76 0.20 0.05
Matches are distributed among these distances:
24 43 0.69
25 19 0.31
ACGTcount: A:0.34, C:0.16, G:0.29, T:0.21
Consensus pattern (24 bp):
CAGGATGCTCATGAGAGCTAATAA
Found at i:18005733 original size:24 final size:24
Alignment explanation
Indices: 18005702--18005786 Score: 82
Period size: 24 Copynumber: 3.5 Consensus size: 24
18005692 CCATGTAAGG
*
18005702 GGAAGCTCATAAGAGCCATAATCG
1 GGAAGCTCATAAGAGCCATAATCA
**
18005726 GGAAGCTCATGCGAGCCA-ATATCA
1 GGAAGCTCATAAGAGCCATA-ATCA
*** *
18005750 GGAAGCTCCGGAGAACCATTAATCA
1 GGAAGCTCATAAGAGCCA-TAATCA
18005775 GGAAGCTCATAA
1 GGAAGCTCATAA
18005787 AAGAGCCTTT
Statistics
Matches: 48, Mismatches: 10, Indels: 5
0.76 0.16 0.08
Matches are distributed among these distances:
23 1 0.02
24 33 0.69
25 13 0.27
26 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.25, T:0.16
Consensus pattern (24 bp):
GGAAGCTCATAAGAGCCATAATCA
Found at i:18007088 original size:15 final size:16
Alignment explanation
Indices: 18007038--18007098 Score: 67
Period size: 15 Copynumber: 3.9 Consensus size: 16
18007028 AACGAGCAAG
18007038 ATAAA-AAATAATATAA
1 ATAAACAAATAA-ATAA
*
18007054 ATGAAA-ACATAAATAA
1 AT-AAACAAATAAATAA
18007070 ATAAACAAATAAA-AA
1 ATAAACAAATAAATAA
18007085 ATAAACAAA-AAATA
1 ATAAACAAATAAATA
18007099 TAAAGAATAA
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.08
15 15 0.38
16 14 0.35
17 8 0.20
ACGTcount: A:0.75, C:0.05, G:0.02, T:0.18
Consensus pattern (16 bp):
ATAAACAAATAAATAA
Found at i:18007107 original size:20 final size:19
Alignment explanation
Indices: 18007064--18007109 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
18007054 ATGAAAACAT
*
18007064 AAATAAATAAACAAATAAA
1 AAATAAACAAACAAATAAA
18007083 AAATAAACAAA-AAATATAA
1 AAATAAACAAACAAATA-AA
18007102 AGAATAAA
1 A-AATAAA
18007110 AGGTACATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 5 0.21
19 13 0.54
20 6 0.25
ACGTcount: A:0.78, C:0.04, G:0.02, T:0.15
Consensus pattern (19 bp):
AAATAAACAAACAAATAAA
Found at i:18008726 original size:18 final size:18
Alignment explanation
Indices: 18008703--18008737 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
18008693 TTTTGGGCCG
* *
18008703 CGTTTGTAATTGGGCCAC
1 CGTTTGAAATCGGGCCAC
18008721 CGTTTGAAATCGGGCCA
1 CGTTTGAAATCGGGCCA
18008738 TCTATTTTGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.29
Consensus pattern (18 bp):
CGTTTGAAATCGGGCCAC
Found at i:18009438 original size:44 final size:44
Alignment explanation
Indices: 18009260--18010095 Score: 573
Period size: 44 Copynumber: 19.5 Consensus size: 44
18009250 TGCCTCACTG
* * * * * *
18009260 CCAATATAAGAAGACATGATTTGCTATTTTCGATCAACTT--TA
1 CCAATATAGGAAGACAAGATCTGTTATCTTCGATCTACTTCCTA
* * * * *
18009302 CGCCAATACATGAAGACAAGATCTGCTT-TCTTTGATCTATTTCGCCA
1 --CCAATATAGGAAGACAAGATCTG-TTATCTTCGATCTACTTC-CTA
* **
18009349 CCAATATAGGAAGACAAGATCTG-CATCTTCGATCCCCTTCCTA
1 CCAATATAGGAAGACAAGATCTGTTATCTTCGATCTACTTCCTA
* * *
18009392 CCAATATAGGAAGACAGGATTTGTTATCTTCGATCTACTTCATA
1 CCAATATAGGAAGACAAGATCTGTTATCTTCGATCTACTTCCTA
* * * ** *
18009436 CCAATACATGAAGACAAGATCAGCTT-TCTTCGATCTACTGGCGA
1 CCAATATAGGAAGACAAGATCTG-TTATCTTCGATCTACTTCCTA
* * *
18009480 CCAATATGGGAAGACAAGATCTG--GTCTTCGATCCACTTCCTA
1 CCAATATAGGAAGACAAGATCTGTTATCTTCGATCTACTTCCTA
* *
18009522 CCAATGTAGGAAGACAAGATCTG----C-T--A--T-CTT-C-G
1 CCAATATAGGAAGACAAGATCTGTTATCTTCGATCTACTTCCTA
* * *
18009554 CCAATACATGAAGACAAGATCTGCTT-TCTTCGATCTACTTCGCCA
1 CCAATATAGGAAGACAAGATCTG-TTATCTTCGATCTACTTC-CTA
* *
18009599 CCAATATGGGAAGACAAGATC---TAGTCTTCGATCCACTTCCTA
1 CCAATATAGGAAGACAAGATCTGTTA-TCTTCGATCTACTTCCTA
* * * * *
18009641 CCAATATAGGAAGACAGGATATGCTATCTTCGATCTACTTCATG
1 CCAATATAGGAAGACAAGATCTGTTATCTTCGATCTACTTCCTA
* * * * *
18009685 CCAATACATGAAGACAAGATCTGCTT-TCTTTGATCTAGTTCGCCA
1 CCAATATAGGAAGACAAGATCTG-TTATCTTCGATCTACTTC-CTA
* * *
18009730 CCAGTATGGGAAGACAAGATCTG-CATCTTCG----A-----TA
1 CCAATATAGGAAGACAAGATCTGTTATCTTCGATCTACTTCCTA
* ** * *
18009764 CCAATATAGGAAGACAGGATCTACTATCTTCGATCTACTTCGTG
1 CCAATATAGGAAGACAAGATCTGTTATCTTCGATCTACTTCCTA
* * *
18009808 CCAATACATGAAGACAAGATCTGCTT-TCTTCGATCTACTTCGCCA
1 CCAATATAGGAAGACAAGATCTG-TTATCTTCGATCTACTTC-CTA
* * * * *
18009853 CCAGTATGGGAAGACAAGATCTG-CATCTTCGATCCACTTTGCTA
1 CCAATATAGGAAGACAAGATCTGTTATCTTCGATCTAC-TTCCTA
* *
18009897 CCAATATAGGAAGACATGATCTGTTATCTTCGATCTACTTCAC-G
1 CCAATATAGGAAGACAAGATCTGTTATCTTCGATCTACTTC-CTA
* * * *
18009941 CCAGTACATGAAGACAAGATCTGCTT-TCTTCGATCTACTTCGCCA
1 CCAATATAGGAAGACAAGATCTG-TTATCTTCGATCTACTTC-CTA
* * * *
18009986 CCAATATGGGAATACAAGATCTG-CATCTTCGATCCACTTCGCTA
1 CCAATATAGGAAGACAAGATCTGTTATCTTCGATCTACTTC-CTA
* *
18010030 CCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACTTCAC-G
1 CCAATATAGGAAGACAAGATCTGTTATCTTCGATCTACTTC-CTA
* *
18010074 CCAATACATGAAGACAAGATCT
1 CCAATATAGGAAGACAAGATCT
18010096 ACTATTTTTA
Statistics
Matches: 613, Mismatches: 130, Indels: 98
0.73 0.15 0.12
Matches are distributed among these distances:
32 20 0.03
33 1 0.00
34 23 0.04
35 7 0.01
36 1 0.00
37 2 0.00
39 3 0.00
40 2 0.00
41 2 0.00
42 58 0.09
43 37 0.06
44 321 0.52
45 135 0.22
47 1 0.00
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (44 bp):
CCAATATAGGAAGACAAGATCTGTTATCTTCGATCTACTTCCTA
Found at i:18009776 original size:34 final size:35
Alignment explanation
Indices: 18009729--18009797 Score: 95
Period size: 34 Copynumber: 2.0 Consensus size: 35
18009719 CTAGTTCGCC
* * *
18009729 ACCAGTATGGGAAGACAAGATCTGC-ATCTTCGAT
1 ACCAATATAGGAAGACAAGATCTACTATCTTCGAT
*
18009763 ACCAATATAGGAAGACAGGATCTACTATCTTCGAT
1 ACCAATATAGGAAGACAAGATCTACTATCTTCGAT
18009798 CTACTTCGTG
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
34 21 0.70
35 9 0.30
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (35 bp):
ACCAATATAGGAAGACAAGATCTACTATCTTCGAT
Found at i:18009910 original size:89 final size:90
Alignment explanation
Indices: 18009763--18010095 Score: 363
Period size: 89 Copynumber: 3.8 Consensus size: 90
18009753 CATCTTCGAT
* * * *
18009763 ACCAATATAGGAAGACAGGATCTACTATCTTCGATCTACTTCG-TGCCAATACATGAAGACAAGA
1 ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCTACCAATACAGGAAGACAAGA
18009827 TCTGCTTTCTTCGATCTACTTCGCC
66 TCTGCTTTCTTCGATCTACTTCGCC
* * * * * *
18009852 ACCAGTATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTTGCTACCAATATAGGAAGACATGA
1 ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCTACCAATACAGGAAGACAAGA
*
18009916 TCTG-TTATCTTCGATCTACTTC-AC
66 TCTGCTT-TCTTCGATCTACTTCGCC
* * * * * * ** *
18009940 GCCAGTACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAATACAAGA
1 ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCTACCAATACAGGAAGACAAGA
* * *
18010005 TCTGC-ATCTTCGATCCACTTCGCT
66 TCTGCTTTCTTCGATCTACTTCGCC
* * * * *
18010029 ACCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACTTCAC-GCCAATACATGAAGACAAGA
1 ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCTACCAATACAGGAAGACAAGA
18010093 TCT
66 TCT
18010096 ACTATTTTTA
Statistics
Matches: 200, Mismatches: 39, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
88 71 0.35
89 129 0.64
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (90 bp):
ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCTACCAATACAGGAAGACAAGA
TCTGCTTTCTTCGATCTACTTCGCC
Found at i:18010003 original size:133 final size:133
Alignment explanation
Indices: 18009756--18010095 Score: 590
Period size: 133 Copynumber: 2.6 Consensus size: 133
18009746 AGATCTGCAT
* ** **
18009756 CTTCGATACCAATATAGGAAGACAGGATCTACTATCTTCGATCTACTTCGTGCCAATACATGAAG
1 CTTCGCTACCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACTTCACGCCAATACATGAAG
*
18009821 ACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGAT
66 ACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGAT
18009886 CCA
131 CCA
* * *
18009889 CTTTGCTACCAATATAGGAAGACATGATCTGTTATCTTCGATCTACTTCACGCCAGTACATGAAG
1 CTTCGCTACCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACTTCACGCCAATACATGAAG
*
18009954 ACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAATACAAGATCTGCATCTTCGAT
66 ACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGAT
18010019 CCA
131 CCA
18010022 CTTCGCTACCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACTTCACGCCAATACATGAAG
1 CTTCGCTACCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACTTCACGCCAATACATGAAG
18010087 ACAAGATCT
66 ACAAGATCT
18010096 ACTATTTTTA
Statistics
Matches: 194, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
133 194 1.00
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (133 bp):
CTTCGCTACCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACTTCACGCCAATACATGAAG
ACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGAT
CCA
Found at i:18010763 original size:26 final size:25
Alignment explanation
Indices: 18010716--18010769 Score: 83
Period size: 25 Copynumber: 2.1 Consensus size: 25
18010706 AGTGTCTTGA
18010716 AAAGAAAAAGTATTCAAGAAC-AAC
1 AAAGAAAAAGTATTCAAGAACAAAC
18010740 AAAGAATAAAGTATTACAAGAACAAAC
1 AAAGAA-AAAGTATT-CAAGAACAAAC
18010767 AAA
1 AAA
18010770 TTCAATACAA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
24 6 0.22
25 8 0.30
26 7 0.26
27 6 0.22
ACGTcount: A:0.65, C:0.11, G:0.11, T:0.13
Consensus pattern (25 bp):
AAAGAAAAAGTATTCAAGAACAAAC
Found at i:18024239 original size:24 final size:24
Alignment explanation
Indices: 18024208--18024292 Score: 82
Period size: 24 Copynumber: 3.5 Consensus size: 24
18024198 CCATGTAAGG
*
18024208 GGAAGCTCATAAGAGCCATAATCG
1 GGAAGCTCATAAGAGCCATAATCA
**
18024232 GGAAGCTCATGCGAGCCA-ATATCA
1 GGAAGCTCATAAGAGCCATA-ATCA
*** *
18024256 GGAAGCTCCGGAGAACCATTAATCA
1 GGAAGCTCATAAGAGCCA-TAATCA
18024281 GGAAGCTCATAA
1 GGAAGCTCATAA
18024293 AAGAGCCTTT
Statistics
Matches: 48, Mismatches: 10, Indels: 5
0.76 0.16 0.08
Matches are distributed among these distances:
23 1 0.02
24 33 0.69
25 13 0.27
26 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.25, T:0.16
Consensus pattern (24 bp):
GGAAGCTCATAAGAGCCATAATCA
Found at i:18025558 original size:16 final size:17
Alignment explanation
Indices: 18025529--18025592 Score: 55
Period size: 16 Copynumber: 3.9 Consensus size: 17
18025519 CGAGCAAGAT
18025529 AAAAAATAATATAAATG
1 AAAAAATAATATAAATG
*
18025546 AAAACATAA-ATAAAT-
1 AAAAAATAATATAAATG
*
18025561 AAACAAATAA-AAAAAT-
1 AAA-AAATAATATAAATG
*
18025577 AAACAAAAAATATAAA
1 AAA-AAATAATATAAA
18025593 GAATAAAAGG
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
15 3 0.08
16 25 0.62
17 12 0.30
ACGTcount: A:0.77, C:0.05, G:0.02, T:0.17
Consensus pattern (17 bp):
AAAAAATAATATAAATG
Found at i:18025576 original size:20 final size:20
Alignment explanation
Indices: 18025553--18025599 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
18025543 ATGAAAACAT
*
18025553 AAATAAATAAACAAATA-AAA
1 AAATAAACAAA-AAATATAAA
18025573 AAATAAACAAAAAATATAAA
1 AAATAAACAAAAAATATAAA
*
18025593 GAATAAA
1 AAATAAA
18025600 AGGTACATGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 5 0.21
20 19 0.79
ACGTcount: A:0.79, C:0.04, G:0.02, T:0.15
Consensus pattern (20 bp):
AAATAAACAAAAAATATAAA
Found at i:18025584 original size:12 final size:12
Alignment explanation
Indices: 18025539--18025592 Score: 54
Period size: 12 Copynumber: 4.4 Consensus size: 12
18025529 AAAAAATAAT
* *
18025539 ATAAATGAAAAC
1 ATAAATAAAAAA
*
18025551 ATAAATAAATAA
1 ATAAATAAAAAA
*
18025563 ACAAATAAAAAA
1 ATAAATAAAAAA
*
18025575 ATAAACAAAAAA
1 ATAAATAAAAAA
18025587 TATAAA
1 -ATAAA
18025593 GAATAAAAGG
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
12 29 0.85
13 5 0.15
ACGTcount: A:0.76, C:0.06, G:0.02, T:0.17
Consensus pattern (12 bp):
ATAAATAAAAAA
Found at i:18025883 original size:20 final size:21
Alignment explanation
Indices: 18025845--18025893 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
18025835 ATTTGTTGGG
* *
18025845 AAAATATATATATAGATTA-AA
1 AAAATA-ATAAATACATTATAA
*
18025866 AAAATAATAAATACATTATCA
1 AAAATAATAAATACATTATAA
18025887 AAAATAA
1 AAAATAA
18025894 ATATGTGTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 10 0.42
21 14 0.58
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (21 bp):
AAAATAATAAATACATTATAA
Found at i:18033939 original size:25 final size:25
Alignment explanation
Indices: 18033896--18033963 Score: 93
Period size: 25 Copynumber: 2.8 Consensus size: 25
18033886 TCATATGATT
18033896 TTACCGATTT-CAGCTCGTGAGAGC
1 TTACCGATTTACAGCTCGTGAGAGC
*
18033920 TTACTGATTTACAGCTCGTGAGAGC
1 TTACCGATTTACAGCTCGTGAGAGC
* * *
18033945 ATACCGATTCATAGCTCGT
1 TTACCGATTTACAGCTCGT
18033964 ATGAGCATGC
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
24 9 0.24
25 29 0.76
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.31
Consensus pattern (25 bp):
TTACCGATTTACAGCTCGTGAGAGC
Found at i:18056940 original size:44 final size:45
Alignment explanation
Indices: 18056890--18056988 Score: 116
Period size: 45 Copynumber: 2.2 Consensus size: 45
18056880 TCGCATCTAG
*
18056890 AAGTTGCAGTGGAGG-AGACT-AAG-TAAGCAAGTCTTATC-CTCCTA
1 AAGTTGCAGT-GAGGCAGACTGAAGAT-AGCAAATCTTATCTC-CCTA
* *
18056934 AAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTG
1 AAGTTGCAGTGAGGCAGACTGAAGATAGCAAATCTTATCTCCCTA
18056979 AAGTTGCAGT
1 AAGTTGCAGT
18056989 TGAACAGATT
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
43 4 0.08
44 15 0.31
45 27 0.56
46 2 0.04
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.25
Consensus pattern (45 bp):
AAGTTGCAGTGAGGCAGACTGAAGATAGCAAATCTTATCTCCCTA
Found at i:18056985 original size:45 final size:44
Alignment explanation
Indices: 18056889--18057379 Score: 159
Period size: 44 Copynumber: 11.3 Consensus size: 44
18056879 ATCGCATCTA
*
18056889 GAAGTTGCAGTGGAGGAGACTAAGTAAGCAAGTCTTATCCTCCT
1 GAAGTTGCAGTGGAGGAGACTAAGTAAGCAAATCTTATCCTCCT
* *
18056933 AAAGTTGCAGT-GAGGCAGACTGAAG-ATGGCAAATCTTAT-CTCCCT
1 GAAGTTGCAGTGGAGG-AGACT-AAGTA-AGCAAATCTTATCCT-CCT
* ** * *
18056978 GAAGTTGCAGTTGAACAGA-TTA--AAGCCGATAATCCTAT-CTCTCT
1 GAAGTTGCAGTGGAGGAGACTAAGTAAG-C-A-AATCTTATCCTC-CT
* *
18057022 GAAGTTGCAGTGGAGTG-GATTAA--AAACATAGATCTTAT-CTCTCT
1 GAAGTTGCAGTGGAG-GAGACTAAGTAAGCA-A-ATCTTATCCTC-CT
* * * * * *
18057066 GAAGTTGCAG-AGAGCAGA-T-TG-CATCTAATCTTAT-CTCCTT
1 GAAGTTGCAGTGGAGGAGACTAAGTAAGCAAATCTTATCCTCC-T
* * *
18057106 GAAGTTGCAGTGGAGTAGA-TTA--AAGCCGATAATCCTAT-CTCCTT
1 GAAGTTGCAGTGGAGGAGACTAAGTAAG-C-A-AATCTTATCCTCC-T
* * * *
18057150 GAAGTTGTAGTGGAGTG-GATTAA--AATCAGATCTTAT-CTCTCT
1 GAAGTTGCAGTGGAG-GAGACTAAGTAAGCAAATCTTATCCTC-CT
* * * * * * *
18057192 GAAGTTGCAG-AGAGTAGA-T-CG-CATCTAGTCTTAT-CTCCGT
1 GAAGTTGCAGTGGAGGAGACTAAGTAAGCAAATCTTATCCTCC-T
* *
18057232 GAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCT
1 GAAGTTGCAGTGGAGGAGACTAAGTAAGCAAATCTTATCCTCCT
* *
18057276 GAAGTTGCAGT-GAGGCAGACTAAAG-ATGGCAAATCTTATCTTCCT
1 GAAGTTGCAGTGGAGG-AGACT-AAGTA-AGCAAATCTTATCCTCCT
* * * * *
18057321 GAAGTTACAGTGGAGCAGATTAAAGT-CG-ATAATCCTAT-CTCCTT
1 GAAGTTGCAGTGGAGGAGACT-AAGTAAGCA-AATCTTATCCTCC-T
18057365 GAAGTTGCAGTGGAG
1 GAAGTTGCAGTGGAG
18057380 CGGATTAAAA
Statistics
Matches: 350, Mismatches: 59, Indels: 76
0.72 0.12 0.16
Matches are distributed among these distances:
39 2 0.01
40 45 0.13
41 21 0.06
42 26 0.07
43 25 0.07
44 149 0.43
45 77 0.22
46 5 0.01
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.29
Consensus pattern (44 bp):
GAAGTTGCAGTGGAGGAGACTAAGTAAGCAAATCTTATCCTCCT
Found at i:18057024 original size:44 final size:43
Alignment explanation
Indices: 18056964--18057543 Score: 322
Period size: 44 Copynumber: 13.5 Consensus size: 43
18056954 GAAGATGGCA
* *
18056964 AATCTTATCTCCCTGAAGTTGCAGTTGAACAGATTAAAGCCGAT
1 AATCTTATCT-CCTGAAGTTGCAGTGGAGCAGATTAAAGCCGAT
* ** **
18057008 AATCCTATCTCTCTGAAGTTGCAGTGGAGTGGATTAAAAAC-AT
1 AATCTTATCTC-CTGAAGTTGCAGTGGAGCAGATTAAAGCCGAT
* ***
18057051 AGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGATT---GCATCT
1 A-ATCTTATCTC-CTGAAGTTGCAGTGGAGCAGATTAAAGCCGAT
*
18057092 AATCTTATCTCCTTGAAGTTGCAGTGGAGTAGATTAAAGCCGAT
1 AATCTTATCTCC-TGAAGTTGCAGTGGAGCAGATTAAAGCCGAT
* * ** **
18057136 AATCCTATCTCCTTGAAGTTGTAGTGGAGTGGATTAAAATC-A-
1 AATCTTATCTCC-TGAAGTTGCAGTGGAGCAGATTAAAGCCGAT
* * * * ***
18057178 GATCTTATCTCTCTGAAGTTGCAG-AGAGTAGA-T--CGCATCT
1 AATCTTATCTC-CTGAAGTTGCAGTGGAGCAGATTAAAGCCGAT
* *
18057218 AGTCTTATCTCCGTGAAGTTGCAGTGGAGCAGACTAAGTAAG-C-A-
1 AATCTTATCTCC-TGAAGTTGCAGTGGAGCAGA-TTA--AAGCCGAT
* * **
18057262 AGTCTTATCCTCCTGAAGTTGCAGT-GAGGCAGACTAAAGATGGCA-
1 AATCTTAT-CTCCTGAAGTTGCAGTGGA-GCAGATTAAAG-CCG-AT
* *
18057307 AATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTAAAGTCGAT
1 AATCTTATC-TCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGAT
* * ** *
18057351 AATCCTATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAATC-AC
1 AATCTTATCTCC-TGAAGTTGCAGTGGAGCAGATTAAAGCCGAT
* * * * ***
18057394 AGATCTTATTTCTCTGAAGTTACAG-AGAGCAGA-T--CGCATCT
1 A-ATCTTATCTC-CTGAAGTTGCAGTGGAGCAGATTAAAGCCGAT
* * * *
18057435 AATCTCATCTCCCTGAAGTTGTAGGGGAGTAGATTAAAGCCGAT
1 AATCTTATCT-CCTGAAGTTGCAGTGGAGCAGATTAAAGCCGAT
* * *
18057479 AATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACC-TT
1 AATCTTATCT-CCTGAAGTTGCAGTGGAGCAGATTAAAGCCGAT
*
18057522 GGATCTTATCTCTCTGAAGTTG
1 -AATCTTATCTC-CTGAAGTTG
18057544 TAGAGAGCAG
Statistics
Matches: 413, Mismatches: 84, Indels: 78
0.72 0.15 0.14
Matches are distributed among these distances:
39 2 0.00
40 59 0.14
41 33 0.08
42 21 0.05
43 30 0.07
44 228 0.55
45 37 0.09
46 2 0.00
47 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.30
Consensus pattern (43 bp):
AATCTTATCTCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGAT
Found at i:18057115 original size:84 final size:84
Alignment explanation
Indices: 18056964--18057513 Score: 347
Period size: 84 Copynumber: 6.4 Consensus size: 84
18056954 GAAGATGGCA
* * * * * *
18056964 AATCTTATCTCCCTGAAGTTGCAGTTGAACAGATTAAAGCCGATAATCCTATCT-CTCTGAAGTT
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAA-TC--TAATCTTATCTCCT-TGAAGTT
* *
18057028 GCAGTGGAGTGGATTAAAAACAT
62 GCAGTGGAGTAGATTAAAACCAT
* *
18057051 AGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGATTGCATCTAATCTTATCTCCTTGAAGTTGCA
1 A-ATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAATCTAATCTTATCTCCTTGAAGTTGCA
*
18057115 GTGGAGTAGATTAAAGCCGAT
65 GTGGAGTAGATTAAAACC-AT
* * ** *
18057136 AATCCTATCTC-CTTGAAGTTGTAGTGGAGTGGATTAAAATC-AGATCTTATCT-CTCTGAAGTT
1 AATCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATT-GAATCTA-ATCTTATCTCCT-TGAAGTT
* *** *
18057198 GCAG-AGAGTAGA-TCGCATC-T
62 GCAGTGGAGTAGATTAAAACCAT
* * *
18057218 AGTCTTATCTC-CGTGAAGTTGCAGTGGAGCAGACTAAGTAAGC-AAGTCTTATCCTCC-TGAAG
1 AATCTTATCTCTC-TGAAGTTGCAGTGGAGCAGA-T-TG-AATCTAA-TCTTAT-CTCCTTGAAG
* * *
18057280 TTGCAGT-GAGGCAGACTAAAGATGGCA-
60 TTGCAGTGGA-GTAGATTAAA-A--CCAT
* * *
18057307 AATCTTATCT-TCCTGAAGTTACAGTGGAGCAGATTAAAGTCGATAATCCTATCTCCTTGAAGTT
1 AATCTTATCTCT-CTGAAGTTGCAGTGGAGCAGATTGAA-TC--TAATCTTATCTCCTTGAAGTT
** * *
18057371 GCAGTGGAGCGGATTAAAATCAC
62 GCAGTGGAGTAGATTAAAACCAT
* * * * * * * *
18057394 AGATCTTATTTCTCTGAAGTTACAG-AGAGCAGATCGCATCTAATCTCATCTCCCTGAAGTTGTA
1 A-ATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAATCTAATCTTATCTCCTTGAAGTTGCA
* *
18057458 GGGGAGTAGATTAAAGCCGAT
65 GTGGAGTAGATTAAAACC-AT
* *
18057479 AATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATT
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATT
18057514 AAAACCTTGG
Statistics
Matches: 362, Mismatches: 67, Indels: 70
0.73 0.13 0.14
Matches are distributed among these distances:
82 28 0.08
83 3 0.01
84 132 0.36
85 37 0.10
86 32 0.09
87 22 0.06
88 48 0.13
89 55 0.15
90 5 0.01
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (84 bp):
AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAATCTAATCTTATCTCCTTGAAGTTGCAG
TGGAGTAGATTAAAACCAT
Found at i:18057244 original size:126 final size:127
Alignment explanation
Indices: 18056964--18057250 Score: 452
Period size: 128 Copynumber: 2.3 Consensus size: 127
18056954 GAAGATGGCA
* *
18056964 AATCTTATCTCCCTGAAGTTGCAGTTGAACAGATTAAAGCCGATAATCCTATCTCTCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCTCTGAAGTTG
*
18057029 CAGTGGAGTGGATTAAAAACATAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATTGCATCT
66 CAGTGGAGTGGATTAAAAACA-AGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCT
* *
18057092 AATCTTATCTCCTTGAAGTTGCAGTGGAGTAGATTAAAGCCGATAATCCTATCTC-CTTGAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCTC-TGAAGTT
* * *
18057156 GTAGTGGAGTGGATTAAAATC-AGATCTTATCTCTCTGAAGTTGCAGAGAGTAGATCGCATCT
65 GCAGTGGAGTGGATTAAAAACAAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCT
* *
18057218 AGTCTTATCTCCGTGAAGTTGCAGTGGAGCAGA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
18057251 CTAAGTAAGC
Statistics
Matches: 147, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
126 69 0.47
127 1 0.01
128 77 0.52
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (127 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCTCTGAAGTTG
CAGTGGAGTGGATTAAAAACAAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCT
Found at i:18057371 original size:89 final size:88
Alignment explanation
Indices: 18056889--18057427 Score: 225
Period size: 89 Copynumber: 6.2 Consensus size: 88
18056879 ATCGCATCTA
* * * * * *
18056889 GAAGTTGCAGTGGAGGAGACTAAGTAAGCAAGTCTTATCCTCCTAAAGTTGCAGT-GAGGCAGAC
1 GAAGTTACAGTGGAGCAGATTAAGTAAGCAAATCCTATCCTCCTGAAGTTGCAGTGGA-GCAGAC
* ** *
18056953 TGAAGATGGCAAATCTTATCTCCCT
65 T-AAAATCACAAATCTTATCTTCCT
* * * **
18056978 GAAGTTGCAGTTGAACAGATT-A--AAGCCGATAATCCTAT-CTCTCTGAAGTTGCAGTGGAGTG
1 GAAGTTACAGTGGAGCAGATTAAGTAAG-C-A-AATCCTATCCTC-CTGAAGTTGCAGTGGAGCA
* * * *
18057039 GATTAAAAACATAGATCTTATC-TCTCT
62 GACTAAAATCACAAATCTTATCTTC-CT
* * * * * * *
18057066 GAAGTTGCAG-AGAGCAGATT--G-CATCTAATCTTAT-CTCCTTGAAGTTGCAGTGGAGTAGA-
1 GAAGTTACAGTGGAGCAGATTAAGTAAGCAAATCCTATCCTCC-TGAAGTTGCAGTGGAGCAGAC
* * *
18057125 TTAAAGC-CGATAATCCTATC-TCCTT
65 TAAAATCAC-A-AATCTTATCTTCC-T
** ** * * * * *
18057150 GAAGTTGTAGTGGAGTGGATTAA--AATCAGATCTTAT-CTCTCTGAAGTTGCAG-AGAGTAGA-
1 GAAGTTACAGTGGAGCAGATTAAGTAAGCAAATCCTATCCTC-CTGAAGTTGCAGTGGAGCAGAC
*** * *
18057210 TCGCAT--CTAGTCTTATC-TCCGT
65 TAAAATCACAAATCTTATCTTCC-T
* * * *
18057232 GAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGT-GAGGCAGAC
1 GAAGTTACAGTGGAGCAGATTAAGTAAGCAAATCCTATCCTCCTGAAGTTGCAGTGGA-GCAGAC
**
18057296 TAAAGATGGCAAATCTTATCTTCCT
65 TAAA-ATCACAAATCTTATCTTCCT
* *
18057321 GAAGTTACAGTGGAGCAGATTAAAGT-CG-ATAATCCTAT-CTCCTTGAAGTTGCAGTGGAGCGG
1 GAAGTTACAGTGGAGCAGATT-AAGTAAGCA-AATCCTATCCTCC-TGAAGTTGCAGTGGAGCAG
* *
18057383 ATTAAAATCACAGATCTTAT-TTCTCT
63 ACTAAAATCACAAATCTTATCTTC-CT
*
18057409 GAAGTTACAG-AGAGCAGAT
1 GAAGTTACAGTGGAGCAGAT
18057428 CGCATCTAAT
Statistics
Matches: 351, Mismatches: 69, Indels: 62
0.73 0.14 0.13
Matches are distributed among these distances:
82 30 0.09
83 8 0.02
84 73 0.21
85 23 0.07
86 29 0.08
87 25 0.07
88 57 0.16
89 95 0.27
90 11 0.03
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (88 bp):
GAAGTTACAGTGGAGCAGATTAAGTAAGCAAATCCTATCCTCCTGAAGTTGCAGTGGAGCAGACT
AAAATCACAAATCTTATCTTCCT
Found at i:18057373 original size:133 final size:128
Alignment explanation
Indices: 18057223--18057582 Score: 332
Period size: 128 Copynumber: 2.8 Consensus size: 128
18057213 CATCTAGTCT
* *
18057223 TATCTCCGTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA-AG-TCTTATC-CTCCTGAAGTTGCA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAA--AAGCACAGATCTTATCTCT-CTGAAGTTACA
* * * * *
18057285 GTGAGGCAGACTAAAG-ATGGCAAATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTAAAGTCG
63 GAGA-GCAGA-T--AGCAT--CAAATCTCATCTCCCTGAAGTTACAGGGGAGCAGATTAAAGCCG
18057349 ATAATCC
122 ATAATCC
* * * * *
18057356 TATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATTTCTCTGAAGTTACAGAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAGCACAGATCTTATCTCTCTGAAGTTACAGAG
* * ** * *
18057421 AGCAGATCGCATCTAATCTCATCTCCCTGAAGTTGTAGGGGAGTAGATTAAAGCCGATAATCT
66 AGCAGATAGCATCAAATCTCATCTCCCTGAAGTTACAGGGGAGCAGATTAAAGCCGATAATCC
* * * *** **
18057484 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGTAGAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAGCACAGATCTTATCTCTCTGAAGTTACAGAG
* * * * *
18057549 AGCAGATCGCATCTAGTCTTATCTCCATGAAGTT
66 AGCAGATAGCATCAAATCTCATCTCCCTGAAGTT
18057583 GCAGTGGATT
Statistics
Matches: 195, Mismatches: 28, Indels: 13
0.83 0.12 0.06
Matches are distributed among these distances:
128 130 0.67
129 1 0.01
130 2 0.01
131 5 0.03
132 7 0.04
133 48 0.25
134 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (128 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAGCACAGATCTTATCTCTCTGAAGTTACAGAG
AGCAGATAGCATCAAATCTCATCTCCCTGAAGTTACAGGGGAGCAGATTAAAGCCGATAATCC
Found at i:18057490 original size:128 final size:128
Alignment explanation
Indices: 18057307--18057586 Score: 398
Period size: 128 Copynumber: 2.2 Consensus size: 128
18057297 AAAGATGGCA
* * * * *
18057307 AATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTAAAGTCGATAATCCTATCTCCTTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGGGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTG
* *
18057372 CAGTGGAGCGGATTAAAATCACAGATCTTATTTCTCTGAAGTTACAGAGAGCAGATCGCATCT
66 CAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTACAGAGAGCAGATCGCATCT
* * * *
18057435 AATCTCATCTCCCTGAAGTTGTAGGGGAGTAGATTAAAGCCGATAATCTTATCTCCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGGGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTG
*** **
18057500 CAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGTAGAGAGCAGATCGCATCT
66 CAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTACAGAGAGCAGATCGCATCT
* *
18057563 AGTCTTATCTCCATGAAGTTGCAG
1 AATCTTATCTCCCTGAAGTTGCAG
18057587 TGGATTAGAC
Statistics
Matches: 132, Mismatches: 20, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
128 132 1.00
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (128 bp):
AATCTTATCTCCCTGAAGTTGCAGGGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTG
CAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTACAGAGAGCAGATCGCATCT
Found at i:18057515 original size:343 final size:344
Alignment explanation
Indices: 18056889--18057590 Score: 1129
Period size: 343 Copynumber: 2.0 Consensus size: 344
18056879 ATCGCATCTA
*
18056889 GAAGTTGCAGTGGAGGAGACTAAGTAAGCAAGTCTTATCCTCCTAAAGTTGCAGTGAGGCAGACT
1 GAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTAAAGTTGCAGTGAGGCAGACT
* * *
18056954 GAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTTGAACAGATTAAAGCCGATAATCCTATCTC
66 AAAGATGGCAAATCTTATCTCCCTGAAGTTACAGTGGAACAGATTAAAGCCGATAATCCTATCTC
* * *
18057019 TCTGAAGTTGCAGTGGAGTGGATTAAAAACATAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGA
131 TCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTACAGAGAGCAGA
* * * * *
18057084 TTGCATCTAATCTTATCTCCTTGAAGTTGCAGTGGAGTAGATTAAAGCCGATAATCCTATCTCCT
196 TCGCATCTAATCTCATCTCCCTGAAGTTGCAGGGGAGTAGATTAAAGCCGATAATCCTATCTCCC
* * *
18057149 TGAAGTTGTAGTGGAGTGGATTAAAA-TCAGATCTTATCTCTCTGAAGTTGCAGAGAGTAGATCG
261 TGAAGTTGCAGTGGAGCGGATTAAAACTCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCG
*
18057213 CATCTAGTCTTATCTCCGT
326 CATCTAGTCTTATCTCCAT
*
18057232 GAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACT
1 GAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTAAAGTTGCAGTGAGGCAGACT
* * *
18057297 AAAGATGGCAAATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTAAAGTCGATAATCCTATCTC
66 AAAGATGGCAAATCTTATCTCCCTGAAGTTACAGTGGAACAGATTAAAGCCGATAATCCTATCTC
* *
18057362 -CTTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATTTCTCTGAAGTTACAGAGAGCAG
131 TC-TGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTACAGAGAGCAG
* *
18057426 ATCGCATCTAATCTCATCTCCCTGAAGTTGTAGGGGAGTAGATTAAAGCCGATAATCTTATCTCC
195 ATCGCATCTAATCTCATCTCCCTGAAGTTGCAGGGGAGTAGATTAAAGCCGATAATCCTATCTCC
** *
18057491 CTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGTAGAGAGCAGAT
260 CTGAAGTTGCAGTGGAGCGGATTAAAA-CTCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGAT
18057556 CGCATCTAGTCTTATCTCCAT
324 CGCATCTAGTCTTATCTCCAT
18057577 GAAGTTGCAGTGGA
1 GAAGTTGCAGTGGA
18057591 TTAGACCCCA
Statistics
Matches: 329, Mismatches: 27, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
342 1 0.00
343 262 0.80
345 66 0.20
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.29
Consensus pattern (344 bp):
GAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTAAAGTTGCAGTGAGGCAGACT
AAAGATGGCAAATCTTATCTCCCTGAAGTTACAGTGGAACAGATTAAAGCCGATAATCCTATCTC
TCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTACAGAGAGCAGA
TCGCATCTAATCTCATCTCCCTGAAGTTGCAGGGGAGTAGATTAAAGCCGATAATCCTATCTCCC
TGAAGTTGCAGTGGAGCGGATTAAAACTCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCG
CATCTAGTCTTATCTCCAT
Found at i:18059361 original size:26 final size:24
Alignment explanation
Indices: 18059294--18059363 Score: 63
Period size: 26 Copynumber: 2.7 Consensus size: 24
18059284 TTATTTTCCT
18059294 ATATATATGTATATTTTCTATAATGTA
1 ATAT-TAT-TATATTTT-TATAATGTA
18059321 ATTATTATTAT-TTTTTAT-ATGTA
1 A-TATTATTATATTTTTATAATGTA
18059344 CATATGTATATATATTTTTA
1 -ATAT-TAT-TATATTTTTA
18059364 ACAAATGTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
23 8 0.21
24 7 0.18
25 7 0.18
26 9 0.24
27 4 0.11
28 3 0.08
ACGTcount: A:0.34, C:0.03, G:0.06, T:0.57
Consensus pattern (24 bp):
ATATTATTATATTTTTATAATGTA
Found at i:18061131 original size:20 final size:21
Alignment explanation
Indices: 18061106--18061146 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
18061096 ATTTTTCATG
18061106 AAAA-TTTAACAAAACCTTAA
1 AAAATTTTAACAAAACCTTAA
*
18061126 AAAATTTTAACAAAACTTTAA
1 AAAATTTTAACAAAACCTTAA
18061147 GGAGATTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.59, C:0.12, G:0.00, T:0.29
Consensus pattern (21 bp):
AAAATTTTAACAAAACCTTAA
Found at i:18061140 original size:11 final size:11
Alignment explanation
Indices: 18061106--18061146 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
18061096 ATTTTTCATG
18061106 AAAA-TTTAAC
1 AAAACTTTAAC
*
18061116 AAAACCTTAA-
1 AAAACTTTAAC
*
18061126 AAAATTTTAAC
1 AAAACTTTAAC
18061137 AAAACTTTAA
1 AAAACTTTAA
18061147 GGAGATTTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
10 12 0.48
11 13 0.52
ACGTcount: A:0.59, C:0.12, G:0.00, T:0.29
Consensus pattern (11 bp):
AAAACTTTAAC
Found at i:18067262 original size:12 final size:12
Alignment explanation
Indices: 18067247--18067275 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
18067237 TTACTTACTC
18067247 ACTTACTTGTTT
1 ACTTACTTGTTT
18067259 ACTTACTTGTTT
1 ACTTACTTGTTT
18067271 ACTTA
1 ACTTA
18067276 AATATCTCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.21, C:0.17, G:0.07, T:0.55
Consensus pattern (12 bp):
ACTTACTTGTTT
Found at i:18067657 original size:100 final size:104
Alignment explanation
Indices: 18067525--18067763 Score: 272
Period size: 100 Copynumber: 2.3 Consensus size: 104
18067515 TTTCTGTACT
* * ** * **
18067525 GCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCCATGTCC
1 GCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACCCCATGTCC
* * *
18067590 C-AGACATGGTCTTATAGGGGA-CT-TC-TCATCTC-GAA
66 CGA-ACATGGTCGTACAGGGGACCTCTCATAATCTCAGAA
* * *
18067625 GCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGGTGCCAACCCCATGTCC
1 GCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACCCCATGTCC
* *
18067690 CGAACATGGTCGTACATGGGACCTCTCATAATCTCAATGAT
66 CGAACATGGTCGTACAGGGGACCTCTCATAATCTC-A-GAA
*
18067731 GCCAATGCCATGTCCAAGACATGGTCTTACATG
1 GCCAATGCCATGTCCCAGACATGGTCTTACATG
18067764 AGATCTCATT
Statistics
Matches: 115, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
100 71 0.62
101 3 0.03
102 2 0.02
103 6 0.05
106 33 0.29
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (104 bp):
GCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACCCCATGTCC
CGAACATGGTCGTACAGGGGACCTCTCATAATCTCAGAA
Found at i:18067735 original size:56 final size:50
Alignment explanation
Indices: 18067474--18067763 Score: 237
Period size: 50 Copynumber: 5.7 Consensus size: 50
18067464 CTGATAATAC
* * * * **
18067474 ATGCCAAAGCTATGTCCCAGACATAGTCTTACATGGGA--TGTTTTC-TG
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTG
* * * ** * *
18067521 TACTGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCG
1 -A-TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTG
* * * * * * *
18067573 GTGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACTTCTCATCTCG
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTG
*
18067623 AAGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTG
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTG
* * *
18067673 GTGCCAACCCCATGTCCC-GAACATGGTCGTACATGGGACCTCTCATAATCTCAATG
1 ATGCCAACGCCATGTCCCAG-ACATGGTCTTACATGGGACCTCTC---ATCT---TG
* *
18067729 ATGCCAATGCCATGTCCAAGACATGGTCTTACATG
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATG
18067764 AGATCTCATT
Statistics
Matches: 195, Mismatches: 35, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
48 1 0.01
49 33 0.17
50 122 0.63
51 3 0.02
52 1 0.01
53 4 0.02
56 30 0.15
57 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (50 bp):
ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTG
Found at i:18072747 original size:24 final size:24
Alignment explanation
Indices: 18072715--18072760 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
18072705 AATCTTCTGC
18072715 CTCTGTTTCGGCTAGAATACCTGA
1 CTCTGTTTCGGCTAGAATACCTGA
18072739 CTCTGTTTCGGCTAGAATACCT
1 CTCTGTTTCGGCTAGAATACCT
18072761 AGTTGAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.35
Consensus pattern (24 bp):
CTCTGTTTCGGCTAGAATACCTGA
Found at i:18075163 original size:49 final size:49
Alignment explanation
Indices: 18075099--18075377 Score: 211
Period size: 50 Copynumber: 5.5 Consensus size: 49
18075089 CAAAACTATG
* * * *
18075099 TCCCAAACATAGTCTTACATGGGAGGTTTTC-TGTAC-TGCCAATGCCATA
1 TCCCAGACATGGTCTTACATGGGA-GTTCTCATAT-CGTGCCAATGCCATA
* * *
18075148 TCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCCATG
1 TCCCAGACATGGTCTTACATGGGAGTTCTCATATC-GTGCCAATGCCATA
** ** * * * *
18075198 TCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGCTAACGCCATG
1 TCCCAGACATGGTCTTACATGGGAGTTCTCATATC-GTGCCAATGCCATA
** * * *
18075248 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGGGAGTTCTCATATC-GTGCCAATGCCATA
* ** * *
18075298 TCCTAGACATGGTCTTACATGGGACCTCTCATAATCCCAATGATGTCAATGCCATG
1 TCCCAGACATGGTCTTACATGGGAGTTCTCAT-AT--C---G-TGCCAATGCCATA
18075354 TCCCAGACATGGTCTTACATGGGA
1 TCCCAGACATGGTCTTACATGGGA
18075378 TCTCATTCCC
Statistics
Matches: 196, Mismatches: 25, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
48 6 0.03
49 23 0.12
50 130 0.66
51 1 0.01
53 1 0.01
55 1 0.01
56 34 0.17
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (49 bp):
TCCCAGACATGGTCTTACATGGGAGTTCTCATATCGTGCCAATGCCATA
Found at i:18075204 original size:50 final size:50
Alignment explanation
Indices: 18075135--18075377 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
18075125 TTTTCTGTAC
* * **
18075135 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* ** *
18075185 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * *
18075235 TGCTAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * *
18075285 TGCCAACGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATAATCCCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-AT--C---GG
*
18075341 TGTCAATGCCATGTCCCAGACATGGTCTTACATGGGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
18075378 TCTCATTCCC
Statistics
Matches: 167, Mismatches: 20, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
50 130 0.78
51 1 0.01
53 1 0.01
56 35 0.21
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Done.