Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 72 of 222
Found at i:21973482 original size:5 final size:5
Alignment explanation
Indices: 21973472--21973583 Score: 224
Period size: 5 Copynumber: 22.4 Consensus size: 5
21973462 TAAATTTTAT
21973472 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
21973522 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
21973572 ATATA ATATA AT
1 ATATA ATATA AT
21973584 CAATGAATAA
Statistics
Matches: 107, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 107 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:21974881 original size:34 final size:34
Alignment explanation
Indices: 21974843--21974908 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
21974833 CGACGGTGCC
21974843 TTGGTGTGGTGTAATTATCGCTCTATTAAGCCTT
1 TTGGTGTGGTGTAATTATCGCTCTATTAAGCCTT
* * *
21974877 TTGGTGTGGTGTAGTTATCGCTTTATTGAGCC
1 TTGGTGTGGTGTAATTATCGCTCTATTAAGCC
21974909 ATTGGATGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.15, C:0.14, G:0.27, T:0.44
Consensus pattern (34 bp):
TTGGTGTGGTGTAATTATCGCTCTATTAAGCCTT
Found at i:21974919 original size:34 final size:34
Alignment explanation
Indices: 21974843--21974920 Score: 104
Period size: 34 Copynumber: 2.3 Consensus size: 34
21974833 CGACGGTGCC
*
21974843 TTGGTGTGGTGTAATTATCGCTCTATTAAGCCTT
1 TTGGTGTGGTGTAATTATCGCTCTATTAAGCCTA
* * *
21974877 TTGGTGTGGTGTAGTTATCGCTTTATTGAGCC-A
1 TTGGTGTGGTGTAATTATCGCTCTATTAAGCCTA
21974910 TTGGATGTGGT
1 TTGG-TGTGGT
21974921 CTATTGAGCT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
33 4 0.10
34 35 0.90
ACGTcount: A:0.15, C:0.12, G:0.29, T:0.44
Consensus pattern (34 bp):
TTGGTGTGGTGTAATTATCGCTCTATTAAGCCTA
Found at i:21984313 original size:6 final size:6
Alignment explanation
Indices: 21984302--21984329 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
21984292 TTTTCGTTAC
21984302 CAGTAT CAGTAT CAGTAT CAGTAT CAGT
1 CAGTAT CAGTAT CAGTAT CAGTAT CAGT
21984330 TTAGGCCTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (6 bp):
CAGTAT
Found at i:21984886 original size:17 final size:18
Alignment explanation
Indices: 21984851--21984888 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
21984841 GACTCATGTT
21984851 ACATGCCCATGTGGGCCC
1 ACATGCCCATGTGGGCCC
*
21984869 ACATGCCCGTGT-GGCCC
1 ACATGCCCATGTGGGCCC
21984886 ACA
1 ACA
21984889 CGACCCAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.18, C:0.39, G:0.26, T:0.16
Consensus pattern (18 bp):
ACATGCCCATGTGGGCCC
Found at i:21989421 original size:20 final size:21
Alignment explanation
Indices: 21989386--21989427 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
21989376 CCCCTTCAGT
* *
21989386 TTAAAAATTTTCATATTTTTC
1 TTAAAAATTCTCATATGTTTC
21989407 TTAAAAATTCT-ATATGTTTC
1 TTAAAAATTCTCATATGTTTC
21989427 T
1 T
21989428 GATTTAGTCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.33, C:0.10, G:0.02, T:0.55
Consensus pattern (21 bp):
TTAAAAATTCTCATATGTTTC
Found at i:21996061 original size:34 final size:34
Alignment explanation
Indices: 21996019--21996087 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
21996009 ACATGGCTAT
21996019 ACACACTTTGATCATCAACCACTCATACATTTCC
1 ACACACTTTGATCATCAACCACTCATACATTTCC
21996053 ACACACTTTGATCATCAACCACTCATACATTTCC
1 ACACACTTTGATCATCAACCACTCATACATTTCC
21996087 A
1 A
21996088 TACTTCCATG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.33, C:0.35, G:0.03, T:0.29
Consensus pattern (34 bp):
ACACACTTTGATCATCAACCACTCATACATTTCC
Found at i:21999618 original size:26 final size:26
Alignment explanation
Indices: 21999542--21999610 Score: 102
Period size: 26 Copynumber: 2.7 Consensus size: 26
21999532 CCCAACAAAA
*
21999542 TTTTGACAATTTTACCCATGGTAAAG
1 TTTTGACGATTTTACCCATGGTAAAG
* * *
21999568 TTTTGATGATTTTACACGTGGTAAAG
1 TTTTGACGATTTTACCCATGGTAAAG
21999594 TTTTGACGATTTTACCC
1 TTTTGACGATTTTACCC
21999611 TTAGTAAAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.42
Consensus pattern (26 bp):
TTTTGACGATTTTACCCATGGTAAAG
Found at i:22014186 original size:19 final size:20
Alignment explanation
Indices: 22014156--22014203 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
22014146 TTGCTGTTAT
*
22014156 TATTTCTTTATTTTTGTTTA
1 TATTTCTTTATTTTGGTTTA
*
22014176 TATTT-TTTATTTTGGTTTT
1 TATTTCTTTATTTTGGTTTA
*
22014195 TTTTTCTTT
1 TATTTCTTT
22014204 CAGTCATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 16 0.67
20 8 0.33
ACGTcount: A:0.10, C:0.04, G:0.06, T:0.79
Consensus pattern (20 bp):
TATTTCTTTATTTTGGTTTA
Found at i:22014442 original size:3 final size:3
Alignment explanation
Indices: 22014434--22014496 Score: 83
Period size: 3 Copynumber: 21.0 Consensus size: 3
22014424 ACTGTTTCTC
* * *
22014434 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATC ATT TTT GTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
22014482 ATTT ATT -TT ATT ATT
1 A-TT ATT ATT ATT ATT
22014497 TATTTCATTT
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
2 2 0.04
3 48 0.91
4 3 0.06
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.68
Consensus pattern (3 bp):
ATT
Found at i:22020074 original size:46 final size:46
Alignment explanation
Indices: 22020003--22020300 Score: 234
Period size: 49 Copynumber: 6.4 Consensus size: 46
22019993 CATATCAAAC
* *
22020003 CTTATCTCCCTGAAGTTGCAGTGGAACAGGTTAAAAATAAAACAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAAACAAAACAAT
* * * *
22020049 CTTATCTCCCTGAAGTTGCAATGGAACAGATTGAAGACAAGCTACATAT
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAAACAA--AACA-AT
**
22020098 CTTATCTCCCTGAAGTTGCAGT-GAAGCAGATTAAAGCCACAAAC---
1 CTTATCTCCCTGAAGTTGCAGTGGAA-CAGATTAAAAACA-AAACAAT
* * * *
22020142 CTTATCTCCCTGAAATTGCAGTGGAACAGGTTAAAAATAAACCAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAAACAAAACAAT
* * * ** * *
22020188 CTTATCTCCCTGAAGTTGTAGTGGAGCAAATTGAAGATGGGCTACA-AAT
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATT-AA-A--AACAAAACAAT
* * **
22020237 CTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCACAAAC---
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAAACA-AAACAAT
*
22020281 CTTATCTCCTTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCA
22020301 TTAGAGCAGG
Statistics
Matches: 202, Mismatches: 35, Indels: 32
0.75 0.13 0.12
Matches are distributed among these distances:
43 3 0.01
44 48 0.24
45 5 0.02
46 64 0.32
47 3 0.01
48 11 0.05
49 66 0.33
50 2 0.01
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (46 bp):
CTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAAACAAAACAAT
Found at i:22020114 original size:49 final size:48
Alignment explanation
Indices: 22020003--22020271 Score: 252
Period size: 46 Copynumber: 5.7 Consensus size: 48
22019993 CATATCAAAC
* *
22020003 CTTATCTCCCTGAAGTTGCAGTGGAACAGGTTAAAAATAA--AACAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAAATAAGCTACAAT
* * * *
22020049 CTTATCTCCCTGAAGTTGCAATGGAACAGATTGAAGACAAGCTACATAT
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAAATAAGCTACA-AT
* *
22020098 CTTATCTCCCTGAAGTTGCAGT-GAAGCAGATT----A-AAGCCACAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAA-CAGATTAAAAATAAGCTAC-AAT
* * *
22020142 CTTATCTCCCTGAAATTGCAGTGGAACAGGTTAAAAATAAAC--CAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAAATAAGCTACAAT
* * * * * **
22020188 CTTATCTCCCTGAAGTTGTAGTGGAGCAAATTGAAGATGGGCTACAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAAATAAGCTAC-AAT
* *
22020237 CTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAA
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAA
22020272 GCCACAAACC
Statistics
Matches: 182, Mismatches: 27, Indels: 25
0.78 0.12 0.11
Matches are distributed among these distances:
44 33 0.18
45 5 0.03
46 69 0.38
47 1 0.01
48 8 0.04
49 66 0.36
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (48 bp):
CTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAAATAAGCTACAAT
Found at i:22020132 original size:95 final size:90
Alignment explanation
Indices: 22020003--22020215 Score: 232
Period size: 93 Copynumber: 2.3 Consensus size: 90
22019993 CATATCAAAC
* * *
22020003 CTTATCTCCCTGAAGTTGCAGTGGAA-CAGGTTAAAAATA-AAACAATCTTATCTCCCTGAAGTT
1 CTTATCTCCCTGAAGTTGCAGT-GAAGCAGATTAAAAACACAAAC---CTTATCTCCCTGAAATT
* * *
22020066 GCAATGGAACAGATTGAAGACAAGCTACATAT
62 GCAATGGAACAGATTAAAAACAAAC--CA-AT
** *
22020098 CTTATCTCCCTGAAGTTGCAGTGAAGCAGATTAAAGCCACAAACCTTATCTCCCTGAAATTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGAAGCAGATTAAAAACACAAACCTTATCTCCCTGAAATTGCAA
* *
22020163 TGGAACAGGTTAAAAATAAACCAAT
66 TGGAACAGATTAAAAACAAACCAAT
* *
22020188 CTTATCTCCCTGAAGTTGTAGTGGAGCA
1 CTTATCTCCCTGAAGTTGCAGTGAAGCA
22020216 AATTGAAGAT
Statistics
Matches: 103, Mismatches: 13, Indels: 9
0.82 0.10 0.07
Matches are distributed among these distances:
90 28 0.27
91 2 0.02
93 35 0.34
94 3 0.03
95 31 0.30
96 4 0.04
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (90 bp):
CTTATCTCCCTGAAGTTGCAGTGAAGCAGATTAAAAACACAAACCTTATCTCCCTGAAATTGCAA
TGGAACAGATTAAAAACAAACCAAT
Found at i:22020161 original size:44 final size:45
Alignment explanation
Indices: 22019998--22020404 Score: 224
Period size: 44 Copynumber: 8.9 Consensus size: 45
22019988 CAGATCATAT
* ***
22019998 CAAACCTTATCTCCCTGAAGTTGCAGTGGAA-CAGGTTAAAAATAA
1 CAAACCTTATCTCCCTGAAGTTGCAGT-GAAGCAGATTAAAAGCCA
* * * *
22020043 AACAATCTTATCTCCCTGAAGTTGCAATGGAA-CAGATTGAAGACAAGCTA
1 CA-AACCTTATCTCCCTGAAGTTGCAGT-GAAGCAGATT--A-A-AAGCCA
* *
22020093 CATATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATT-AAAGCCA
1 CAAACCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTAAAAGCCA
* * ***
22020137 CAAACCTTATCTCCCTGAAATTGCAGTGGAA-CAGGTTAAAAATAAA
1 CAAACCTTATCTCCCTGAAGTTGCAGT-GAAGCAGATT-AAAAGCCA
* * * * * * *
22020183 CCAATCTTATCTCCCTGAAGTTGTAGTGGAGCAAATTGAAGATGGGCTA
1 CAAACCTTATCTCCCTGAAGTTGCAGTGAAGCAGATT-AA-A--AGCCA
* * *
22020232 CAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATT-AAAGCCA
1 CAAACCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTAAAAGCCA
* * * * **
22020276 CAAACCTTATCTCCTTGAAGTTGCA-TTAGAGCAGGTT-GAAGATA
1 CAAACCTTATCTCCCTGAAGTTGCAGTGA-AGCAGATTAAAAGCCA
* * * * *
22020320 CCAATCTTATCTCCCT-ATAGTTTCAGT-AGAGCATATT-AAAGCTA
1 CAAACCTTATCTCCCTGA-AGTTGCAGTGA-AGCAGATTAAAAGCCA
* * * *
22020364 CTAA-TTCTATCTCCTTGAAGTTGCAGTGCAGCAGATTAAAA
1 CAAACCT-TATCTCCCTGAAGTTGCAGTGAAGCAGATTAAAA
22020405 CGATGAATCC
Statistics
Matches: 283, Mismatches: 59, Indels: 40
0.74 0.15 0.10
Matches are distributed among these distances:
43 3 0.01
44 128 0.45
45 12 0.04
46 66 0.23
47 2 0.01
48 4 0.01
49 64 0.23
50 4 0.01
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (45 bp):
CAAACCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTAAAAGCCA
Found at i:22020164 original size:139 final size:139
Alignment explanation
Indices: 22019998--22020403 Score: 522
Period size: 139 Copynumber: 3.0 Consensus size: 139
22019988 CAGATCATAT
*
22019998 CAAACCTTATCTCCCTGAAGTTGCAGTGGAACAGGTTAAAAATAAAACAATCTTATCTCCCTGAA
1 CAAACCTTATCTCCCTGAAGTTGCAGTGGAACAGGTTAAAAATAAACCAATCTTATCTCCCTGAA
* * *
22020063 GTTGCAATGGAACAGATTGAAGACAAGCTACATATCTTATCTCCCTGAAGTTGCAGTGAAGCAGA
66 GTTGCAGTGGAGCAAATTGAAGACAAGCTACATATCTTATCTCCCTGAAGTTGCAGTGAAGCAGA
22020128 TTAAAGCCA
131 TTAAAGCCA
*
22020137 CAAACCTTATCTCCCTGAAATTGCAGTGGAACAGGTTAAAAATAAACCAATCTTATCTCCCTGAA
1 CAAACCTTATCTCCCTGAAGTTGCAGTGGAACAGGTTAAAAATAAACCAATCTTATCTCCCTGAA
* *** * * *
22020202 GTTGTAGTGGAGCAAATTGAAGATGGGCTACAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGA
66 GTTGCAGTGGAGCAAATTGAAGACAAGCTACATATCTTATCTCCCTGAAGTTGCAGTGAAGCAGA
22020267 TTAAAGCCA
131 TTAAAGCCA
* * * * * *
22020276 CAAACCTTATCTCCTTGAAGTTGCATTAGAGCAGGTTGAAGAT--ACCAATCTTATCTCCCT-AT
1 CAAACCTTATCTCCCTGAAGTTGCAGTGGAACAGGTTAAAAATAAACCAATCTTATCTCCCTGA-
* * * * * * *
22020338 AGTTTCAGTAGAGCATATTAAAG-CTA-CTA-AT-TC-TATCTCCTTGAAGTTGCAGTGCAGCAG
65 AGTTGCAGTGGAGCAAATTGAAGACAAGCTACATATCTTATCTCCCTGAAGTTGCAGTGAAGCAG
22020398 ATTAAA
130 ATTAAA
22020404 ACGATGAATC
Statistics
Matches: 235, Mismatches: 31, Indels: 9
0.85 0.11 0.03
Matches are distributed among these distances:
132 30 0.13
133 2 0.01
134 1 0.00
135 3 0.01
136 1 0.00
137 35 0.15
139 163 0.69
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (139 bp):
CAAACCTTATCTCCCTGAAGTTGCAGTGGAACAGGTTAAAAATAAACCAATCTTATCTCCCTGAA
GTTGCAGTGGAGCAAATTGAAGACAAGCTACATATCTTATCTCCCTGAAGTTGCAGTGAAGCAGA
TTAAAGCCA
Found at i:22020248 original size:95 final size:92
Alignment explanation
Indices: 22020046--22020271 Score: 258
Period size: 95 Copynumber: 2.4 Consensus size: 92
22020036 AAAATAAAAC
* * * *
22020046 AATCTTATCTCCCTGAAGTTGCAATGGAACAGATTGAAGACAAGCTACATATCTTATCTCCCTGA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAAACAAAC-ACATATCTTATCTCCCTGA
*
22020111 AGTTGCAGTGAAGCAGATTAAAGCCACA
65 AGTTGCAGTGAAGCAAATTAAAGCCACA
* * * *
22020139 AACCTTATCTCCCTGAAATTGCAGTGGAACAGGTTAAAAATAAAC-CA-ATCTTATCTCCCTGAA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAAACAAACACATATCTTATCTCCCTGAA
* * *
22020202 GTTGTAGTGGAGCAAATTGAAGATGGGCTACA
66 GTTGCAGTGAAGCAAATT-AA-A---GCCACA
* *
22020234 AATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAA
22020272 GCCACAAACC
Statistics
Matches: 111, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
90 31 0.28
91 4 0.04
92 1 0.01
93 37 0.33
95 38 0.34
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.27
Consensus pattern (92 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAAACAAACACATATCTTATCTCCCTGAA
GTTGCAGTGAAGCAAATTAAAGCCACA
Found at i:22020397 original size:88 final size:88
Alignment explanation
Indices: 22019959--22020390 Score: 228
Period size: 93 Copynumber: 4.8 Consensus size: 88
22019949 ATAAATTACA
* * * * * * *
22019959 AATCTTATATCTCTGAAGTTGCAGTAGAGCAGATCATA---TCAAACCTTATCTCCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTACAGTAGAGCAGATTAAAGCCACAAACCTTATCTCCTTGAAGTTG
* * * * *
22020021 CAGTGGAACAGGTTAAAAATAAAAC
66 CAGTAGAGCAGGTTGAAGAT--ACC
* * * * * * * *
22020046 AATCTTATCTCCCTGAAGTTGCAATGGAACAGATTGAAGACAAGCTACATATCTTATCTCCCTGA
1 AATCTTATCTCCCTGAAGTTACAGTAGAGCAGATT----A-AAGCCACAAACCTTATCTCCTTGA
* * ** *
22020111 AGTTGCAGT-GAAGCAGATTAAAGCCACA
61 AGTTGCAGTAG-AGCAGGTTGAAGATACC
* * * * * * *** * * *
22020139 AACCTTATCTCCCTGAAATTGCAGTGGAACAGGTTAAAAATAAACCAATCTTATCTCCCTGAAGT
1 AATCTTATCTCCCTGAAGTTACAGTAGAGCAGATT--AAAGCCACAAACCTTATCTCCTTGAAGT
* * ** *
22020204 TGTAGTGGAGCAAATTGAAGATGGGCTACA
64 TGCAGTAGAGCAGGTTGAAGA-----TACC
*
22020234 AATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCACAAACCTTATCTCCTTGAAGTTG
1 AATCTTATCTCCCTGAAGTTACAGTAGAGCAGATTAAAGCCACAAACCTTATCTCCTTGAAGTTG
*
22020299 CATTAGAGCAGGTTGAAGATACC
66 CAGTAGAGCAGGTTGAAGATACC
* * * * *
22020322 AATCTTATCTCCCT-ATAGTTTCAGTAGAGCATATTAAAGCTACTAA-TTCTATCTCCTTGAAGT
1 AATCTTATCTCCCTGA-AGTTACAGTAGAGCAGATTAAAGCCACAAACCT-TATCTCCTTGAAGT
22020385 TGCAGT
64 TGCAGT
22020391 GCAGCAGATT
Statistics
Matches: 272, Mismatches: 56, Indels: 33
0.75 0.16 0.09
Matches are distributed among these distances:
87 31 0.11
88 61 0.22
90 37 0.14
91 4 0.01
92 1 0.00
93 70 0.26
94 1 0.00
95 67 0.25
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (88 bp):
AATCTTATCTCCCTGAAGTTACAGTAGAGCAGATTAAAGCCACAAACCTTATCTCCTTGAAGTTG
CAGTAGAGCAGGTTGAAGATACC
Found at i:22030891 original size:6 final size:6
Alignment explanation
Indices: 22030880--22030910 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
22030870 AATTTTCTGA
22030880 CTCTCC CTCTCC CTCTCC CTCTCC CTCTCC C
1 CTCTCC CTCTCC CTCTCC CTCTCC CTCTCC C
22030911 GCTACATCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.00, C:0.68, G:0.00, T:0.32
Consensus pattern (6 bp):
CTCTCC
Found at i:22036908 original size:13 final size:14
Alignment explanation
Indices: 22036877--22036908 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
22036867 TAGCCATTTT
22036877 TATTTTTCTTTTAA
1 TATTTTTCTTTTAA
22036891 TATTTTTCTTTTAA
1 TATTTTTCTTTTAA
22036905 -ATTT
1 TATTT
22036909 AATTTAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.22, C:0.06, G:0.00, T:0.72
Consensus pattern (14 bp):
TATTTTTCTTTTAA
Found at i:22040021 original size:22 final size:23
Alignment explanation
Indices: 22039978--22040035 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 23
22039968 CTGAGTTGGT
*
22039978 AAACGGTAAGCTCTATCAAGCT-
1 AAACGGTAAGCTCCATCAAGCTA
* *
22040000 GAACGGTAAGCTCCGT-AGAGCTA
1 AAACGGTAAGCTCCATCA-AGCTA
22040023 AAACGGTAAGCTC
1 AAACGGTAAGCTC
22040036 ATAAGAGTTG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 1 0.03
22 17 0.57
23 12 0.40
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.19
Consensus pattern (23 bp):
AAACGGTAAGCTCCATCAAGCTA
Found at i:22040042 original size:23 final size:22
Alignment explanation
Indices: 22039977--22040067 Score: 78
Period size: 23 Copynumber: 4.0 Consensus size: 22
22039967 CCTGAGTTGG
*
22039977 TAAACGGTAAGCTCTATCA-AGC
1 TAAACGGTAAGCTC-ATAAGAGC
* *
22039999 TGAACGGTAAGCTCCGT-AGAGC
1 TAAACGGTAAGCT-CATAAGAGC
*
22040021 TAAAACGGTAAGCTCATAAGAGT
1 T-AAACGGTAAGCTCATAAGAGC
* *
22040044 TGAAACGATAAGCTCATACGAGC
1 T-AAACGGTAAGCTCATAAGAGC
22040067 T
1 T
22040068 GTGGTGAGTC
Statistics
Matches: 56, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
21 1 0.02
22 19 0.34
23 36 0.64
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.21
Consensus pattern (22 bp):
TAAACGGTAAGCTCATAAGAGC
Found at i:22042564 original size:17 final size:17
Alignment explanation
Indices: 22042530--22042563 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
22042520 GACCATGTTA
22042530 TAATTTCTTTGATATTT
1 TAATTTCTTTGATATTT
*
22042547 TAATTT-TTTTATATTT
1 TAATTTCTTTGATATTT
22042563 T
1 T
22042564 TCAAAAATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.71
Consensus pattern (17 bp):
TAATTTCTTTGATATTT
Found at i:22045833 original size:89 final size:88
Alignment explanation
Indices: 22045647--22045843 Score: 216
Period size: 89 Copynumber: 2.2 Consensus size: 88
22045637 TCTGTTCCAT
* * * ** ** *
22045647 TGCAACATCAAGGTGATAAGACTGGTGTCTTCGATCTGCTTCTCTGCTGGTACAGGAAGACAAGA
1 TGCAAC-TCAAGGAGATAAGACTGCTATCTTCGATCTGCTTCGATGCCAGTACAGGAAAACAAGA
* ** * *
22045712 TCTGCTATCTTTAGTCTTCACCGC
65 TCTACTATCTTTAACCTACACCAC
22045736 TGCAACTCAAGGAGATAAGACTTGCTATCTTCGATCTGCTTCGATGCCAGTACAGGAAAACAAGA
1 TGCAACTCAAGGAGATAAGAC-TGCTATCTTCGATCTGCTTCGATGCCAGTACAGGAAAACAAGA
*
22045801 TCTACTAT-TTTCAACCTACTCCAC
65 TCTACTATCTTT-AACCTACACCAC
* *
22045825 TGCTACTCAGGGAGATAAG
1 TGCAACTCAAGGAGATAAG
22045844 GCTTTATAGT
Statistics
Matches: 90, Mismatches: 16, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
88 17 0.19
89 73 0.81
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (88 bp):
TGCAACTCAAGGAGATAAGACTGCTATCTTCGATCTGCTTCGATGCCAGTACAGGAAAACAAGAT
CTACTATCTTTAACCTACACCAC
Found at i:22053393 original size:3 final size:3
Alignment explanation
Indices: 22053385--22053422 Score: 51
Period size: 3 Copynumber: 12.3 Consensus size: 3
22053375 ATAAGGAAAC
22053385 AAT AAT AAT AA- AAT AAT AAT AAT AGATT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A-A-T AAT AAT AAT A
22053423 TTAAACTGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
2 2 0.06
3 26 0.81
4 2 0.06
5 2 0.06
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:22053399 original size:11 final size:12
Alignment explanation
Indices: 22053385--22053422 Score: 51
Period size: 11 Copynumber: 3.1 Consensus size: 12
22053375 ATAAGGAAAC
22053385 AATAATAATAA-
1 AATAATAATAAT
22053396 AATAATAATAAT
1 AATAATAATAAT
22053408 AGATTAATAATAAT
1 A-A-TAATAATAAT
22053422 A
1 A
22053423 TTAAACTGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.46
12 1 0.04
13 1 0.04
14 11 0.46
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (12 bp):
AATAATAATAAT
Found at i:22053402 original size:14 final size:14
Alignment explanation
Indices: 22053385--22053422 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
22053375 ATAAGGAAAC
22053385 AATAATAATAAAAT
1 AATAATAATAAAAT
* *
22053399 AATAATAATAGATT
1 AATAATAATAAAAT
22053413 AATAATAATA
1 AATAATAATA
22053423 TTAAACTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (14 bp):
AATAATAATAAAAT
Found at i:22057245 original size:30 final size:30
Alignment explanation
Indices: 22057211--22057273 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
22057201 ACATTTGAGG
*
22057211 TAGATTCTTAAGTATTATGTGACACAGGTT
1 TAGATTCTCAAGTATTATGTGACACAGGTT
22057241 TAGATTCTCAAGTATTATGTGACACAGGTT
1 TAGATTCTCAAGTATTATGTGACACAGGTT
22057271 TAG
1 TAG
22057274 CTCGGACTAG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (30 bp):
TAGATTCTCAAGTATTATGTGACACAGGTT
Found at i:22059186 original size:21 final size:21
Alignment explanation
Indices: 22059161--22059200 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
22059151 AGAAAAGGGC
22059161 TTAATCGTGTAAA-ATGAAAAT
1 TTAATCGT-TAAATATGAAAAT
*
22059182 TTAATGGTTAAATATGAAA
1 TTAATCGTTAAATATGAAA
22059201 TTGCCTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.47, C:0.03, G:0.15, T:0.35
Consensus pattern (21 bp):
TTAATCGTTAAATATGAAAAT
Found at i:22060316 original size:43 final size:43
Alignment explanation
Indices: 22060254--22060382 Score: 118
Period size: 43 Copynumber: 3.0 Consensus size: 43
22060244 CATAGGATCT
* *
22060254 TCGATATGTGTTTTTGTGTAAGACCACGTTTGGGACTTTGGCA
1 TCGATATGTGTTTTCGTGTAAGACCACGTTTGGGACATTGGCA
* * * *
22060297 TCGATTTGTGTTTTCGTGTAAGACC-CTGTCTGGGGCAGTGGC-
1 TCGATATGTGTTTTCGTGTAAGACCAC-GTTTGGGACATTGGCA
* * ** * * *
22060339 TCGATCTATGAATACATGTAAGACCACGTTTGGGACGTTGGCA
1 TCGATATGTGTTTTCGTGTAAGACCACGTTTGGGACATTGGCA
22060382 T
1 T
22060383 TGTACGAGCC
Statistics
Matches: 67, Mismatches: 16, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
42 31 0.46
43 36 0.54
ACGTcount: A:0.19, C:0.17, G:0.29, T:0.35
Consensus pattern (43 bp):
TCGATATGTGTTTTCGTGTAAGACCACGTTTGGGACATTGGCA
Found at i:22063044 original size:36 final size:36
Alignment explanation
Indices: 22062997--22063074 Score: 138
Period size: 36 Copynumber: 2.2 Consensus size: 36
22062987 TGTATTTTTT
*
22062997 ATATTGCTCTAAAATGAATTGAAACTTAATGGTTTG
1 ATATTGCTCTAAAATGAATTGAAACTTAATGGTATG
22063033 ATATTGCTCTAAAATGAATTGAAACTTAATGGTATG
1 ATATTGCTCTAAAATGAATTGAAACTTAATGGTATG
*
22063069 CTATTG
1 ATATTG
22063075 GAATGTTTGA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (36 bp):
ATATTGCTCTAAAATGAATTGAAACTTAATGGTATG
Found at i:22073852 original size:11 final size:11
Alignment explanation
Indices: 22073836--22073866 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
22073826 ATACCCATAC
22073836 CCCATACCTTG
1 CCCATACCTTG
*
22073847 CCCATACCTTT
1 CCCATACCTTG
22073858 CCCATACCT
1 CCCATACCT
22073867 ACCCATACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.19, C:0.48, G:0.03, T:0.29
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:22074440 original size:18 final size:18
Alignment explanation
Indices: 22074417--22074505 Score: 133
Period size: 18 Copynumber: 4.9 Consensus size: 18
22074407 CGTTTACGGT
22074417 ACTATTCACGTATACAGC
1 ACTATTCACGTATACAGC
22074435 ACTATTCACGTATACAGC
1 ACTATTCACGTATACAGC
* *
22074453 ACTATTCATGTATACGGC
1 ACTATTCACGTATACAGC
* *
22074471 ACTATTCACGTATACGGT
1 ACTATTCACGTATACAGC
*
22074489 ACTGTTCACGTATACAG
1 ACTATTCACGTATACAG
22074506 TAGTTGGGAT
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 65 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (18 bp):
ACTATTCACGTATACAGC
Found at i:22078573 original size:11 final size:11
Alignment explanation
Indices: 22078557--22078587 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
22078547 ATACCCATAC
22078557 CCCATACCTTG
1 CCCATACCTTG
*
22078568 CCCATACCTTT
1 CCCATACCTTG
22078579 CCCATACCT
1 CCCATACCT
22078588 ACCCATACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.19, C:0.48, G:0.03, T:0.29
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:22080195 original size:14 final size:14
Alignment explanation
Indices: 22080178--22080205 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
22080168 CTCACATTTC
22080178 TTTTCTTTTCTCCA
1 TTTTCTTTTCTCCA
22080192 TTTTCTTTTCTCCA
1 TTTTCTTTTCTCCA
22080206 GATTTCTGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.29, G:0.00, T:0.64
Consensus pattern (14 bp):
TTTTCTTTTCTCCA
Found at i:22080280 original size:6 final size:6
Alignment explanation
Indices: 22080269--22080297 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
22080259 CTGTAAAATC
22080269 GATTTT GATTTT GATTTT GATTTT G-TTTT
1 GATTTT GATTTT GATTTT GATTTT GATTTT
22080298 ACTTTTGCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.17
6 19 0.83
ACGTcount: A:0.14, C:0.00, G:0.17, T:0.69
Consensus pattern (6 bp):
GATTTT
Found at i:22081900 original size:17 final size:17
Alignment explanation
Indices: 22081880--22081914 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
22081870 ATATTAAGAA
22081880 TTTTATTAAATTATATT
1 TTTTATTAAATTATATT
22081897 TTTTATTAAATTATATT
1 TTTTATTAAATTATATT
22081914 T
1 T
22081915 AATAATAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TTTTATTAAATTATATT
Found at i:22082162 original size:45 final size:44
Alignment explanation
Indices: 22082071--22082166 Score: 113
Period size: 45 Copynumber: 2.2 Consensus size: 44
22082061 ATTACAACAT
* **
22082071 CATTCCATTCAACCAAACACAAGAATACTATTACGCCTCTGTTC
1 CATTACATTCAACCAAACACAAGAATACTATTACGCCTCTAATC
* * *
22082115 CATTACATTCAACCAAACA-ATTGAATTGCTATTATGCCTCTAATC
1 CATTACATTCAACCAAACACA-AGAA-TACTATTACGCCTCTAATC
22082160 CATTACA
1 CATTACA
22082167 GCGAACCAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
43 1 0.02
44 21 0.48
45 22 0.50
ACGTcount: A:0.35, C:0.28, G:0.06, T:0.30
Consensus pattern (44 bp):
CATTACATTCAACCAAACACAAGAATACTATTACGCCTCTAATC
Found at i:22082706 original size:38 final size:39
Alignment explanation
Indices: 22082654--22082727 Score: 132
Period size: 38 Copynumber: 1.9 Consensus size: 39
22082644 TAAAATTATC
22082654 TTTTTTTTTCTCTCTCATTTTATTTCCAAAGAGTTTTAG
1 TTTTTTTTTCTCTCTCATTTTATTTCCAAAGAGTTTTAG
*
22082693 TTTTTTTTT-TCTCTCATTTTATTTTCAAAGAGTTT
1 TTTTTTTTTCTCTCTCATTTTATTTCCAAAGAGTTT
22082728 CCAAATATGC
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
38 25 0.74
39 9 0.26
ACGTcount: A:0.18, C:0.14, G:0.07, T:0.62
Consensus pattern (39 bp):
TTTTTTTTTCTCTCTCATTTTATTTCCAAAGAGTTTTAG
Found at i:22088461 original size:50 final size:50
Alignment explanation
Indices: 22088406--22088599 Score: 178
Period size: 50 Copynumber: 3.9 Consensus size: 50
22088396 CATTGAGGTT
* * *
22088406 ATGAGAGGTCCCATGTAAGACCATGTCTGAGACATGGCGTTGGCACCGAG
1 ATGAAAGGTCCCATGTAAGACCATGTCTGAGACATGGCATTGGCACCGAC
* ** * * *
22088456 ATGAGAGGTCCCCCGTAAGACCATGTCTGAGACATGTCATGGGCACCGAT
1 ATGAAAGGTCCCATGTAAGACCATGTCTGAGACATGGCATTGGCACCGAC
** * * *
22088506 ATGAAAACTCCCATGTAAGACCATATCT-AGGATATGACATTGGCA--GTAC
1 ATGAAAGGTCCCATGTAAGACCATGTCTGA-GACATGGCATTGGCACCG-AC
* ** * *
22088555 AAGAAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 ATGAAAGGTCCCATGTAAGACCATGTCTGAGACATGGCATTGGCA
22088600 TGTTATTATC
Statistics
Matches: 117, Mismatches: 24, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
48 1 0.01
49 38 0.32
50 78 0.67
ACGTcount: A:0.30, C:0.23, G:0.26, T:0.22
Consensus pattern (50 bp):
ATGAAAGGTCCCATGTAAGACCATGTCTGAGACATGGCATTGGCACCGAC
Found at i:22097318 original size:23 final size:22
Alignment explanation
Indices: 22097266--22097318 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
22097256 TCCACGTCTT
*
22097266 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
22097288 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
22097311 TTTCTTTT
1 TTTCTTTT
22097319 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:22109529 original size:4 final size:4
Alignment explanation
Indices: 22109520--22109605 Score: 52
Period size: 4 Copynumber: 21.8 Consensus size: 4
22109510 TTTTCACTTG
* ** * * *
22109520 TTTA TTTA TTCA -TTA TTCC TTTTA TTTTA TTCA TTTA TTCA TTCA TTTA
1 TTTA TTTA TTTA TTTA TTTA TT-TA TT-TA TTTA TTTA TTTA TTTA TTTA
* * *
22109569 CTTG TTTA TATA -TTA TTTA TTTA TTTA TTTA -TTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
22109606 TAATTCTTCT
Statistics
Matches: 62, Mismatches: 16, Indels: 8
0.72 0.19 0.09
Matches are distributed among these distances:
3 7 0.11
4 48 0.77
5 7 0.11
ACGTcount: A:0.23, C:0.08, G:0.01, T:0.67
Consensus pattern (4 bp):
TTTA
Found at i:22109550 original size:21 final size:21
Alignment explanation
Indices: 22109520--22109559 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
22109510 TTTTCACTTG
22109520 TTTATTTATTCA-TTATTCCT
1 TTTATTTATTCATTTATTCCT
22109540 TTTATTTTATTCATTTATTC
1 TTTA-TTTATTCATTTATTC
22109560 ATTCATTTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 4 0.22
21 8 0.44
22 6 0.33
ACGTcount: A:0.20, C:0.12, G:0.00, T:0.68
Consensus pattern (21 bp):
TTTATTTATTCATTTATTCCT
Found at i:22109567 original size:21 final size:21
Alignment explanation
Indices: 22109524--22109567 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
22109514 CACTTGTTTA
* *
22109524 TTTATTCATTATTCCTTTTAT
1 TTTATTCATTATTCCATTCAT
22109545 TTTATTCATTTATT-CATTCAT
1 TTTATTCA-TTATTCCATTCAT
22109566 TT
1 TT
22109568 ACTTGTTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.20, C:0.14, G:0.00, T:0.66
Consensus pattern (21 bp):
TTTATTCATTATTCCATTCAT
Found at i:22112911 original size:10 final size:9
Alignment explanation
Indices: 22112891--22112942 Score: 54
Period size: 9 Copynumber: 5.6 Consensus size: 9
22112881 TTTTCTATTA
22112891 AAAACAAAAG
1 AAAA-AAAAG
22112901 AAACAAAAAG
1 AAA-AAAAAG
22112911 -AAAAAAAG
1 AAAAAAAAG
22112919 AAAAAAAA-
1 AAAAAAAAG
22112927 ATAAAAAGAAG
1 A-AAAAA-AAG
22112938 AAAAA
1 AAAAA
22112943 GAAGGCCAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
8 7 0.19
9 14 0.38
10 14 0.38
11 2 0.05
ACGTcount: A:0.85, C:0.04, G:0.10, T:0.02
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:22112919 original size:18 final size:18
Alignment explanation
Indices: 22112896--22112942 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
22112886 TATTAAAAAC
*
22112896 AAAAGAAACAAAAAGAAA
1 AAAAGAAAAAAAAAGAAA
*
22112914 AAAAGAAAAAAAAATAAA
1 AAAAGAAAAAAAAAGAAA
22112932 AAGAAGAAAAA
1 AA-AAGAAAAA
22112943 GAAGGCCAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 18 0.69
19 8 0.31
ACGTcount: A:0.85, C:0.02, G:0.11, T:0.02
Consensus pattern (18 bp):
AAAAGAAAAAAAAAGAAA
Found at i:22112946 original size:9 final size:8
Alignment explanation
Indices: 22112905--22112945 Score: 57
Period size: 8 Copynumber: 5.0 Consensus size: 8
22112895 CAAAAGAAAC
22112905 AAAAAGAA
1 AAAAAGAA
22112913 AAAAAGAA
1 AAAAAGAA
22112921 AAAAA-AA
1 AAAAAGAA
22112928 TAAAAAGAA
1 -AAAAAGAA
22112937 GAAAAAGAA
1 -AAAAAGAA
22112946 GGCCAAGATA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
7 2 0.07
8 18 0.60
9 10 0.33
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.02
Consensus pattern (8 bp):
AAAAAGAA
Found at i:22114178 original size:137 final size:135
Alignment explanation
Indices: 22113726--22114221 Score: 428
Period size: 137 Copynumber: 3.6 Consensus size: 135
22113716 GATAGATTGA
* * * * *
22113726 AGATCATAGCAATCCTTATCTCCATGAAGCTGTAGTGGAGCAGACTAAAGATAGCGAATGTTATT
1 AGATCATAGCAAACCTTATCTCCCTGAAGTTATAGTGGAGCAGACTAAAGATAGCGAATCTTATT
* * * *
22113791 TCCCTGAAGTTGCAGTGGAACAGATTAAAGTTATAAATTACAGATCTTATCTTTCTGAAGTTGCA
66 TCCCTAAAGTTGCAGTGGAA-GGATTGAAG-TATAAATTACAGATCTTATCTCTCTGAAGTTGCA
*
22113856 GTAGAGC
129 GTAGAGT
* * * ** * * * * *
22113863 AAATCATATCAAAACTTATCTCTTTGAAGTTGA-AGTGGAACA-AGTTAAAAATAAACCAATCTT
1 AGATCATAGCAAACCTTATCTCCCTGAAGTT-ATAGTGGAGCAGA-CTAAAGAT-AGCGAATCTT
* ** * *** *
22113926 ATCTCCCTAAAGTTATAGTGGAGCAGG-TTGAAG-ACAGGCTACAAATCTTATCTC-CTTGAAGT
63 ATTTCCCTAAAGTTGCAGTGGA--AGGATTGAAGTATAAATTACAGATCTTATCTCTC-TGAAGT
* *
22113988 TGAAGTGGAGT
125 TGCAGTAGAGT
* * * * *
22113999 AGATTAAAGCCACAAACCTTATCCCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAGCGAATCTT
1 AGATCATAG---CAAACCTTATCTCCCTGAAGTTATAGTGGAGCAGACTAAAGATAGCGAATCTT
* *
22114064 ATTTCCTTAAAGTTGCAGTGGAATGGATTGAAGCTATAAATTACAGATCTTATCTCTCTGAAGAT
63 ATTTCCCTAAAGTTGCAGTGGAA-GGATTGAAG-TATAAATTACAGATCTTATCTCTCTGAAGTT
22114129 GCAGTAGAGT
126 GCAGTAGAGT
* ** * * *
22114139 AGATCATAGCAAACCTTAGCTCCCTGAAGTTATAGTGGAGCAGGTTAAAGTTA-CGAGTCTTATC
1 AGATCATAGCAAACCTTATCTCCCTGAAGTTATAGTGGAGCAGACTAAAGATAGCGAATCTTATT
* *
22114203 TCCCTGAAGTTGCAATGGA
66 TCCCTAAAGTTGCAGTGGA
22114222 GCAGACTGAA
Statistics
Matches: 273, Mismatches: 70, Indels: 33
0.73 0.19 0.09
Matches are distributed among these distances:
135 1 0.00
136 61 0.22
137 77 0.28
138 62 0.23
139 32 0.12
140 39 0.14
141 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (135 bp):
AGATCATAGCAAACCTTATCTCCCTGAAGTTATAGTGGAGCAGACTAAAGATAGCGAATCTTATT
TCCCTAAAGTTGCAGTGGAAGGATTGAAGTATAAATTACAGATCTTATCTCTCTGAAGTTGCAGT
AGAGT
Found at i:22114266 original size:89 final size:88
Alignment explanation
Indices: 22113969--22114525 Score: 238
Period size: 96 Copynumber: 6.1 Consensus size: 88
22113959 ACAGGCTACA
* * * ** ** *
22113969 AATCTTATCTCCTTGAAGTTGAAGTGGAGTAGATTAAAGCCACAAACCTTATCCCCCTGAAGTTG
1 AATCTTATCTCCTTGAAGTTGCAGTGGAGCAGGTTAAAGTTAC-AGTCTTATCTCCCTGAAGTTG
*
22114034 TAGTGGAGCAGACTGAAGATAGCG
65 CAGTGGAGCAGACTGAAGATAGCG
* * * *
22114058 AATCTTATTTCCTTAAAGTTGCAGTGGAATGGATTGAAGCTATAAA-TTACAGATCTTATCTCTC
1 AATCTTATCTCCTTGAAGTTGCAGTGG-A-GCA--G--G-T-TAAAGTTACAG-TCTTATCTCCC
* * * * *
22114122 TGAAGATGCAGTAGAGTAGA-T---CATAGCA
57 TGAAGTTGCAGTGGAGCAGACTGAAGATAGCG
* * * **
22114150 AACCTTAGCTCCCTGAAGTTATAGTGGAGCAGGTTAAAGTTACGAGTCTTATCTCCCTGAAGTTG
1 AATCTTATCTCCTTGAAGTTGCAGTGGAGCAGGTTAAAGTTAC-AGTCTTATCTCCCTGAAGTTG
*
22114215 CAATGGAGCAGACTGAAGATAGCG
65 CAGTGGAGCAGACTGAAGATAGCG
* * * * *
22114239 AATCTTATTTCTTTGAAGTTGCAGTGGAATGGATTGAAGCTATAAA-TTACTGATCTTATCTCTC
1 AATCTTATCTCCTTGAAGTTGCAGTGG-A-GCA--G--G-T-TAAAGTTACAG-TCTTATCTCCC
* * * *
22114303 TGAAGTTGCAATAGAGCAGA-T---CATAGCA
57 TGAAGTTGCAGTGGAGCAGACTGAAGATAGCG
* * * * * * * * * *
22114331 AAACTTATCTCCCTAAAGTTGTAGTGGAACAGGTTAAAAATAAACTAATCTTATCTCCTTAAAGT
1 AATCTTATCTCCTTGAAGTTGCAGTGGAGCAGGTT-AAAGT-TAC-AGTCTTATCTCCCTGAAGT
* * * *
22114396 TACAGTAGAGCAGATTGAAGATAGGTTACA
63 TGCAGTGGAGCAGACTGAAGATA-G---CG
* * ** ** * *
22114426 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGAG-TAAAGCGACCAACCTTATCTCCTTTAAGTT
1 AATCTTATCTCCTTGAAGTTGCAGTGGAGCAG-GTTAAAGTTA-CAGTCTTATCTCCCTGAAGTT
* ** *
22114490 GTAGTGGAGCAGGTTGAAGATA-CC
64 GCAGTGGAGCAGACTGAAGATAGCG
22114514 AATCTTATCTCC
1 AATCTTATCTCC
22114526 CTGAGCGGAG
Statistics
Matches: 355, Mismatches: 75, Indels: 77
0.70 0.15 0.15
Matches are distributed among these distances:
84 5 0.01
85 35 0.10
86 6 0.02
87 28 0.08
88 16 0.05
89 49 0.14
90 5 0.01
91 9 0.03
92 52 0.15
93 39 0.11
94 4 0.01
95 37 0.10
96 62 0.17
97 8 0.02
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (88 bp):
AATCTTATCTCCTTGAAGTTGCAGTGGAGCAGGTTAAAGTTACAGTCTTATCTCCCTGAAGTTGC
AGTGGAGCAGACTGAAGATAGCG
Found at i:22114286 original size:181 final size:181
Alignment explanation
Indices: 22114016--22114368 Score: 580
Period size: 181 Copynumber: 2.0 Consensus size: 181
22114006 AGCCACAAAC
* *
22114016 CTTATCCCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCCTTAAAGTTGCA
1 CTTATCCCCCTGAAGTTGCAATGGAGCAGACTGAAGATAGCGAATCTTATTTCCTTAAAGTTGCA
* *
22114081 GTGGAATGGATTGAAGCTATAAATTACAGATCTTATCTCTCTGAAGATGCAGTAGAGTAGATCAT
66 GTGGAATGGATTGAAGCTATAAATTACAGATCTTATCTCTCTGAAGATGCAATAGAGCAGATCAT
* * *
22114146 AGCAAACCTTAGCTCCCTGAAGTTATAGTGGAGCAGGTTAAAGTTACGAGT
131 AGCAAAACTTAGCTCCCTAAAGTTATAGTGGAACAGGTTAAAGTTACGAGT
* * *
22114197 CTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGATAGCGAATCTTATTTCTTTGAAGTTGCA
1 CTTATCCCCCTGAAGTTGCAATGGAGCAGACTGAAGATAGCGAATCTTATTTCCTTAAAGTTGCA
* *
22114262 GTGGAATGGATTGAAGCTATAAATTACTGATCTTATCTCTCTGAAGTTGCAATAGAGCAGATCAT
66 GTGGAATGGATTGAAGCTATAAATTACAGATCTTATCTCTCTGAAGATGCAATAGAGCAGATCAT
* *
22114327 AGCAAAACTTATCTCCCTAAAGTTGTAGTGGAACAGGTTAAA
131 AGCAAAACTTAGCTCCCTAAAGTTATAGTGGAACAGGTTAAA
22114369 AATAAACTAA
Statistics
Matches: 158, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
181 158 1.00
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.30
Consensus pattern (181 bp):
CTTATCCCCCTGAAGTTGCAATGGAGCAGACTGAAGATAGCGAATCTTATTTCCTTAAAGTTGCA
GTGGAATGGATTGAAGCTATAAATTACAGATCTTATCTCTCTGAAGATGCAATAGAGCAGATCAT
AGCAAAACTTAGCTCCCTAAAGTTATAGTGGAACAGGTTAAAGTTACGAGT
Found at i:22114515 original size:44 final size:44
Alignment explanation
Indices: 22114334--22114527 Score: 156
Period size: 44 Copynumber: 4.2 Consensus size: 44
22114324 CATAGCAAAA
* * * *
22114334 CTTATCTCCCTAAAGTTGTAGTGGAACAGGTTAAAAATAAACTAAT
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTAAAGAT--ACCAAT
* * * * * *
22114380 CTTATCTCCTTAAAGTTACAGTAGAGCAGATTGAAGATAGGTTACAAAT
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGGTT--A-A-A-GATACCAAT
** *
22114429 CTTATCTCCCTAAAGTTGCAGTGGAGCAGAG-TAAAGCGACCAAC
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAG-GTTAAAGATACCAAT
* * * *
22114473 CTTATCTCCTTTAAGTTGTAGTGGAGCAGGTTGAAGATACCAAT
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTAAAGATACCAAT
22114517 CTTATCTCCCT
1 CTTATCTCCCT
22114528 GAGCGGAGCA
Statistics
Matches: 116, Mismatches: 25, Indels: 16
0.74 0.16 0.10
Matches are distributed among these distances:
43 1 0.01
44 50 0.43
45 1 0.01
46 27 0.23
47 1 0.01
48 1 0.01
49 33 0.28
50 1 0.01
51 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (44 bp):
CTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTAAAGATACCAAT
Found at i:22114545 original size:37 final size:37
Alignment explanation
Indices: 22114495--22114566 Score: 99
Period size: 37 Copynumber: 1.9 Consensus size: 37
22114485 AAGTTGTAGT
* * **
22114495 GGAGCAGGTTGAAGATACCAATCTTATCTCCCTGAGC
1 GGAGCAGATTGAAGATACAAATCCAATCTCCCTGAGC
*
22114532 GGAGCAGATTGAAGCTACAAATCCAATCTCCCTGA
1 GGAGCAGATTGAAGATACAAATCCAATCTCCCTGA
22114567 AGTTGTAGTG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.22
Consensus pattern (37 bp):
GGAGCAGATTGAAGATACAAATCCAATCTCCCTGAGC
Found at i:22116272 original size:12 final size:13
Alignment explanation
Indices: 22116218--22116272 Score: 55
Period size: 12 Copynumber: 4.4 Consensus size: 13
22116208 TCATTGTTCC
22116218 TTTTATTTTATTCA
1 TTTTA-TTTATTCA
*
22116232 TTTTTATATATT-A
1 -TTTTATTTATTCA
22116245 -TTTATTTATTCA
1 TTTTATTTATTCA
22116257 -TTTATTTATT-A
1 TTTTATTTATTCA
22116268 TTTTA
1 TTTTA
22116273 ATCATTCTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
11 10 0.28
12 15 0.42
13 1 0.03
14 5 0.14
15 5 0.14
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (13 bp):
TTTTATTTATTCA
Found at i:22138173 original size:50 final size:50
Alignment explanation
Indices: 22137954--22138182 Score: 215
Period size: 50 Copynumber: 4.5 Consensus size: 50
22137944 AGAATGAGAC
* **
22137954 CTCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGGT
1 CTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCA---A-G--ATGAGAGGT
* * * * *
22138010 CCCACGTAAAACCATGTTTGGGACATGACGTTGGCACCAAGATGAGAGGT
1 CTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGGT
* * *
22138060 CTCACGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATGAGAGGT
1 CTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGGT
* * * * * * **
22138110 CCCCTGTAAGACCATGTCTGGGACATGGCATGGGCATCAATATGAGAACT
1 CTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGGT
* *
22138160 CTCATGTATGACCATATCTGGGA
1 CTCATGTAAGACCATGTCTGGGA
22138183 TAGTGCATTG
Statistics
Matches: 146, Mismatches: 27, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
50 113 0.77
52 1 0.01
53 1 0.01
56 31 0.21
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (50 bp):
CTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGGT
Found at i:22143601 original size:18 final size:18
Alignment explanation
Indices: 22143578--22143643 Score: 123
Period size: 18 Copynumber: 3.7 Consensus size: 18
22143568 AAAATGTGAG
*
22143578 AAATGATGTTCACATTTT
1 AAATGATGTTCACATTTC
22143596 AAATGATGTTCACATTTC
1 AAATGATGTTCACATTTC
22143614 AAATGATGTTCACATTTC
1 AAATGATGTTCACATTTC
22143632 AAATGATGTTCA
1 AAATGATGTTCA
22143644 AATTGATGGA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
18 47 1.00
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (18 bp):
AAATGATGTTCACATTTC
Found at i:22144169 original size:72 final size:72
Alignment explanation
Indices: 22144074--22144312 Score: 356
Period size: 72 Copynumber: 3.3 Consensus size: 72
22144064 CAATGCTAAA
* *
22144074 CTAGTTTTATCAATAGTTATTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
1 CTAGTTTTATTAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
22144139 GTGCAAT
66 GTGCAAT
* *
22144146 CTAGTTTTATTAATGGCTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
1 CTAGTTTTATTAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
*
22144211 GTGTAAT
66 GTGCAAT
* *
22144218 CTAGTTTTATTAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTACTAATTTAT
1 CTAGTTTTATTAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
* *
22144283 ACT-AAAT
66 -GTGCAAT
* *
22144290 -TAGTTTGATCAATAGTTGTTTAT
1 CTAGTTTTATTAATAGTTGTTTAT
22144313 ATATGATTTT
Statistics
Matches: 153, Mismatches: 13, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
71 21 0.14
72 131 0.86
73 1 0.01
ACGTcount: A:0.24, C:0.06, G:0.16, T:0.54
Consensus pattern (72 bp):
CTAGTTTTATTAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
GTGCAAT
Found at i:22145627 original size:21 final size:20
Alignment explanation
Indices: 22145599--22145637 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
22145589 GCAGATTTTA
22145599 TGGAATATGA-AGATATTAAC
1 TGGAATATGAGA-ATATTAAC
22145619 TGGACATATGAGAATATTA
1 TGGA-ATATGAGAATATTA
22145638 TTGATTCAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 4 0.24
21 12 0.71
22 1 0.06
ACGTcount: A:0.44, C:0.05, G:0.21, T:0.31
Consensus pattern (20 bp):
TGGAATATGAGAATATTAAC
Found at i:22146238 original size:13 final size:13
Alignment explanation
Indices: 22146222--22146253 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
22146212 ACTCTTTCAC
22146222 AGCATTTTCCAAA
1 AGCATTTTCCAAA
*
22146235 AGCACTTTCCAAA
1 AGCATTTTCCAAA
22146248 AGCATT
1 AGCATT
22146254 GCCAAAATAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.38, C:0.25, G:0.09, T:0.28
Consensus pattern (13 bp):
AGCATTTTCCAAA
Found at i:22146251 original size:26 final size:27
Alignment explanation
Indices: 22146200--22146253 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 27
22146190 GAACATTTTA
* *
22146200 TTTCTCAAAAGCACTCTTTCACAGCAT
1 TTTCTCAAAAGCACTCTTCCAAAGCAT
22146227 TTTC-CAAAAGCACT-TTCCAAAAGCAT
1 TTTCTCAAAAGCACTCTTCC-AAAGCAT
22146253 T
1 T
22146254 GCCAAAATAG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 3 0.12
26 17 0.71
27 4 0.17
ACGTcount: A:0.33, C:0.28, G:0.07, T:0.31
Consensus pattern (27 bp):
TTTCTCAAAAGCACTCTTCCAAAGCAT
Found at i:22146398 original size:14 final size:15
Alignment explanation
Indices: 22146373--22146404 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
22146363 AGAAGTGTTG
22146373 TATTCATTAATTTAA
1 TATTCATTAATTTAA
22146388 TATTC-TTAATTTAA
1 TATTCATTAATTTAA
22146402 TAT
1 TAT
22146405 ATATATTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (15 bp):
TATTCATTAATTTAA
Found at i:22146746 original size:22 final size:22
Alignment explanation
Indices: 22146701--22146748 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
22146691 GAGTCTTAAC
*
22146701 TTATTGCAATTTATTTTATCAA
1 TTATTGCAATATATTTTATCAA
*
22146723 TTATTGCAATAT-TTTTGTCAAA
1 TTATTGCAATATATTTTATC-AA
22146745 TTAT
1 TTAT
22146749 ATATATTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 6 0.26
22 17 0.74
ACGTcount: A:0.31, C:0.08, G:0.06, T:0.54
Consensus pattern (22 bp):
TTATTGCAATATATTTTATCAA
Found at i:22163307 original size:35 final size:35
Alignment explanation
Indices: 22163261--22163331 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
22163251 TAATGTAAGG
22163261 TGAGTTTGAAATGAGCATGATGGGAGAGCTCTCAT
1 TGAGTTTGAAATGAGCATGATGGGAGAGCTCTCAT
22163296 TGAGTTTGAAATGAGCATGATGGGAGAGCTCTCAT
1 TGAGTTTGAAATGAGCATGATGGGAGAGCTCTCAT
22163331 T
1 T
22163332 CTTTTTGGGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.28, C:0.11, G:0.31, T:0.30
Consensus pattern (35 bp):
TGAGTTTGAAATGAGCATGATGGGAGAGCTCTCAT
Found at i:22168605 original size:55 final size:55
Alignment explanation
Indices: 22168538--22168645 Score: 173
Period size: 55 Copynumber: 2.0 Consensus size: 55
22168528 CTTAACTTGC
* *
22168538 AAACATTTTGATCTTGTAA-GAGTTATTTCGTTGTTTGCTTATTTGTATCTCTTTG
1 AAACATTCTGATCTTGTAAGGA-TTATTACGTTGTTTGCTTATTTGTATCTCTTTG
*
22168593 AAACATTCTGATCTTGTAAGGATTATTACTTTGTTTGCTTATTTGTATCTCTT
1 AAACATTCTGATCTTGTAAGGATTATTACGTTGTTTGCTTATTTGTATCTCTT
22168646 ATAGAGGGTT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
55 47 0.96
56 2 0.04
ACGTcount: A:0.21, C:0.12, G:0.15, T:0.52
Consensus pattern (55 bp):
AAACATTCTGATCTTGTAAGGATTATTACGTTGTTTGCTTATTTGTATCTCTTTG
Found at i:22170577 original size:5 final size:5
Alignment explanation
Indices: 22170567--22170591 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
22170557 TGAGCATTCG
22170567 ATCGA ATCGA ATCGA ATCGA ATCGA
1 ATCGA ATCGA ATCGA ATCGA ATCGA
22170592 TAATTTTCGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (5 bp):
ATCGA
Found at i:22170690 original size:5 final size:5
Alignment explanation
Indices: 22170682--22170707 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
22170672 GAGATGGAAC
22170682 TCGAA TCGAA TCGAA TCGAA TCGAA T
1 TCGAA TCGAA TCGAA TCGAA TCGAA T
22170708 ATATTTGTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.23
Consensus pattern (5 bp):
TCGAA
Found at i:22171647 original size:9 final size:9
Alignment explanation
Indices: 22171629--22171683 Score: 76
Period size: 9 Copynumber: 6.1 Consensus size: 9
22171619 TATAGTTTGA
*
22171629 TATTCAAAT
1 TATTCGAAT
22171638 TATTCGAAT
1 TATTCGAAT
22171647 TATGT-GAAT
1 TAT-TCGAAT
22171656 TATTCGAAT
1 TATTCGAAT
*
22171665 TATTCGAGT
1 TATTCGAAT
22171674 TATTCGAAT
1 TATTCGAAT
22171683 T
1 T
22171684 CGAAAACTCA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
8 1 0.02
9 39 0.95
10 1 0.02
ACGTcount: A:0.33, C:0.09, G:0.13, T:0.45
Consensus pattern (9 bp):
TATTCGAAT
Found at i:22173934 original size:25 final size:24
Alignment explanation
Indices: 22173887--22173937 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
22173877 TAGTTTCCAC
22173887 TACTTTAGTTTTATTTTATTTTAT
1 TACTTTAGTTTTATTTTATTTTAT
*
22173911 TACTTTATGTTTTGTTATTA-TTTAT
1 TACTTTA-GTTTTATT-TTATTTTAT
22173936 TA
1 TA
22173938 ATTTTATTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 7 0.29
25 14 0.58
26 3 0.12
ACGTcount: A:0.22, C:0.04, G:0.06, T:0.69
Consensus pattern (24 bp):
TACTTTAGTTTTATTTTATTTTAT
Found at i:22193506 original size:12 final size:13
Alignment explanation
Indices: 22193483--22193547 Score: 60
Period size: 13 Copynumber: 4.7 Consensus size: 13
22193473 TTATGACTAC
*
22193483 ATTATAATATTTT
1 ATTATTATATTTT
22193496 ATT-TTATATTTT
1 ATTATTATATTTT
*
22193508 ATTATTATTGTTATTAAT
1 ATTATTA----TATT-TT
22193526 ATTATTATATTTT
1 ATTATTATATTTT
22193539 ATTATTATA
1 ATTATTATA
22193548 GTGATATTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
12 11 0.26
13 16 0.37
14 4 0.09
17 4 0.09
18 8 0.19
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.65
Consensus pattern (13 bp):
ATTATTATATTTT
Found at i:22193514 original size:3 final size:3
Alignment explanation
Indices: 22193490--22193546 Score: 54
Period size: 3 Copynumber: 21.0 Consensus size: 3
22193480 TACATTATAA
* *
22193490 TAT T-T TAT T-T TA- TAT T-T TAT TAT TAT TGT TAT TAA TAT TAT TA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
22193533 TAT T-T TAT TAT TAT
1 TAT TAT TAT TAT TAT
22193547 AGTGATATTT
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
2 12 0.27
3 32 0.73
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:22194638 original size:4 final size:4
Alignment explanation
Indices: 22194629--22194654 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
22194619 TCATGTTAAT
22194629 TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TT
22194655 CATGAAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:22197552 original size:52 final size:52
Alignment explanation
Indices: 22197488--22197602 Score: 178
Period size: 52 Copynumber: 2.2 Consensus size: 52
22197478 CAGATAAGGA
* *
22197488 TAAGG-TATGAAAGTTGATCATTCTCTTACTCTCCAAATTTGATTAACAACAT
1 TAAGGATA-GAAAGTTGATCATTCTCTTACTCTCCAAATTCGATCAACAACAT
* *
22197540 TAAGGATAGAAAGTTGATCCTTCTCTTACTCTCTAAATTCGATCAACAACAT
1 TAAGGATAGAAAGTTGATCATTCTCTTACTCTCCAAATTCGATCAACAACAT
22197592 TAAGGATAGAA
1 TAAGGATAGAA
22197603 TATAATTTGG
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
52 56 0.97
53 2 0.03
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (52 bp):
TAAGGATAGAAAGTTGATCATTCTCTTACTCTCCAAATTCGATCAACAACAT
Found at i:22198477 original size:39 final size:38
Alignment explanation
Indices: 22198434--22198551 Score: 106
Period size: 36 Copynumber: 3.2 Consensus size: 38
22198424 TATAACATAA
22198434 TTTTAATATTATTATTTAATGTAAATATAATATAAGTA-
1 TTTTAATATTATTATTTAATGTAAATATAATATAA-TAT
*
22198472 TTTT--TATTATAATTTAATGTAAATATAA-AT-ATAT
1 TTTTAATATTATTATTTAATGTAAATATAATATAATAT
* * * *
22198506 TTTATCAT-TTATTATTTCAT-TTAATATATATAAAAATAT
1 TTT-TAATATTATTATTTAATGTAAATATA-AT-ATAATAT
22198545 TTTTAAT
1 TTTTAAT
22198552 GGGTCACTTT
Statistics
Matches: 66, Mismatches: 6, Indels: 16
0.75 0.07 0.18
Matches are distributed among these distances:
33 2 0.03
34 4 0.06
35 10 0.15
36 34 0.52
37 1 0.02
38 8 0.12
39 7 0.11
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (38 bp):
TTTTAATATTATTATTTAATGTAAATATAATATAATAT
Found at i:22198507 original size:33 final size:35
Alignment explanation
Indices: 22198422--22198510 Score: 112
Period size: 36 Copynumber: 2.5 Consensus size: 35
22198412 ATTATTATTT
*
22198422 AATATAACATA-ATTTTAATATTATTATTTAATGTA
1 AATATAACATATATTTT-ATATTATAATTTAATGTA
*
22198457 AATATAATATAAGTATTTT-TATTATAATTTAATGTA
1 AATATAACAT-A-TATTTTATATTATAATTTAATGTA
22198493 AATATAA-ATATATTTTAT
1 AATATAACATATATTTTAT
22198511 CATTTATTAT
Statistics
Matches: 48, Mismatches: 2, Indels: 9
0.81 0.03 0.15
Matches are distributed among these distances:
33 6 0.12
34 2 0.04
35 11 0.23
36 24 0.50
38 5 0.10
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.49
Consensus pattern (35 bp):
AATATAACATATATTTTATATTATAATTTAATGTA
Found at i:22199590 original size:34 final size:35
Alignment explanation
Indices: 22199546--22199612 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
22199536 CAGTAAAATA
*
22199546 TTTTCCGTAAAATGATTT-CTGGAAAATATTTTAC
1 TTTTCCGTAAAATGATTTACTGAAAAATATTTTAC
*
22199580 TTTTCTGTAAAATGATTTACTGAAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGAAAAATATTTT
22199613 TTGGTATTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.34, C:0.09, G:0.10, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGAAAAATATTTTAC
Found at i:22215584 original size:17 final size:18
Alignment explanation
Indices: 22215564--22215598 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
22215554 TAGAATAGAA
*
22215564 AATAACTTAT-TGGGTTG
1 AATAAATTATATGGGTTG
22215581 AATAAATTATATGGGTTG
1 AATAAATTATATGGGTTG
22215599 GTTTCAAAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.34, C:0.03, G:0.23, T:0.40
Consensus pattern (18 bp):
AATAAATTATATGGGTTG
Found at i:22217942 original size:6 final size:6
Alignment explanation
Indices: 22217933--22217964 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
22217923 TAAGTCTAAG
22217933 AAAATA AAAATA AAAATA AAAATA AAAATA AA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AA
22217965 TAAACTTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:22219691 original size:23 final size:23
Alignment explanation
Indices: 22219664--22219726 Score: 67
Period size: 23 Copynumber: 2.7 Consensus size: 23
22219654 TATATAGAAC
22219664 TAATAATAAAAATAAAAGATAATA
1 TAATAATAAAAATAAAA-ATAATA
22219688 -AATAATAAACTAAT-AAAATAATA
1 TAATAATAAA--AATAAAAATAATA
*
22219711 TAACTAATAAGAATAA
1 TAA-TAATAAAAATAA
22219727 TGGATAAGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
23 18 0.55
24 6 0.18
25 9 0.27
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.25
Consensus pattern (23 bp):
TAATAATAAAAATAAAAATAATA
Found at i:22219703 original size:8 final size:8
Alignment explanation
Indices: 22219683--22219720 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
22219673 AAATAAAAGA
22219683 TAATAAA-
1 TAATAAAC
22219690 TAATAAAC
1 TAATAAAC
*
22219698 TAATAAAA
1 TAATAAAC
22219706 TAATATAAC
1 TAATA-AAC
22219715 TAATAA
1 TAATAA
22219721 GAATAATGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
7 7 0.26
8 13 0.48
9 7 0.26
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (8 bp):
TAATAAAC
Found at i:22219713 original size:25 final size:23
Alignment explanation
Indices: 22219665--22219726 Score: 63
Period size: 25 Copynumber: 2.6 Consensus size: 23
22219655 ATATAGAACT
*
22219665 AATAATAAAAATAAAAGATAATA
1 AATAATAAAAATAAAAAATAATA
22219688 AATAATAAACTAATAAAATAAT-ATA
1 AATAATAAA--AATAAAA-AATAATA
* *
22219713 ACTAATAAGAATAA
1 AATAATAAAAATAA
22219727 TGGATAAGAA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
23 14 0.42
25 17 0.52
26 2 0.06
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.24
Consensus pattern (23 bp):
AATAATAAAAATAAAAAATAATA
Found at i:22220785 original size:115 final size:114
Alignment explanation
Indices: 22220576--22220787 Score: 275
Period size: 115 Copynumber: 1.8 Consensus size: 114
22220566 AAATTTTGGA
* * * *
22220576 AAAATTAAGTCTCAGGATCCACACGGCCAATGACATGCCTGTGTGTGCAAGCTAAGTGGGTCACA
1 AAAATTAAGTCTCAGGATCCACACGGCCAAGGACACGCCTGTGTGTCCAACCT-AGTGGGTCACA
** * *
22220641 TGGCCATGTCGCCAAGCCGTCTAACTCACTGTTGAATATTTTAAAATTTT
65 CAGCCATGTCGCCAAGCCATATAACTCACTGTTGAATATTTTAAAATTTT
*
22220691 AAAATTAAGTCTTAGGATCCACACGGCCAAGGACACGTCC-GTGTGTCCAGACCGT-GTGGGTCA
1 AAAATTAAGTCTCAGGATCCACACGGCCAAGGACACG-CCTGTGTGTCCA-ACC-TAGTGGGTCA
* *
22220754 CACAGCCATGTCGCCAGGCCATATAAGTCACTGT
63 CACAGCCATGTCGCCAAGCCATATAACTCACTGT
22220788 CAAAACCCTT
Statistics
Matches: 83, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
115 78 0.94
116 4 0.05
117 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (114 bp):
AAAATTAAGTCTCAGGATCCACACGGCCAAGGACACGCCTGTGTGTCCAACCTAGTGGGTCACAC
AGCCATGTCGCCAAGCCATATAACTCACTGTTGAATATTTTAAAATTTT
Found at i:22227699 original size:27 final size:29
Alignment explanation
Indices: 22227643--22227705 Score: 76
Period size: 27 Copynumber: 2.2 Consensus size: 29
22227633 TTCAATTTAT
22227643 TTTAATAAATAATATAATTAATAATAAAAA
1 TTTAA-AAATAATATAATTAATAATAAAAA
* *
22227673 TTTAAAAA-AAT-TAATTAATTATTAAAA
1 TTTAAAAATAATATAATTAATAATAAAAA
*
22227700 GTTAAA
1 TTTAAA
22227706 TTTCTACAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
27 19 0.63
28 3 0.10
29 3 0.10
30 5 0.17
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (29 bp):
TTTAAAAATAATATAATTAATAATAAAAA
Found at i:22230897 original size:31 final size:30
Alignment explanation
Indices: 22230849--22230910 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 30
22230839 GTGAAATTTA
**
22230849 ATCATTTTATTGAAATAATATTTTAATTAAT
1 ATCATTTTATTGAAATAA-ATGATAATTAAT
**
22230880 ATCATTTTATTTTAATAAATGATAATTAAT
1 ATCATTTTATTGAAATAAATGATAATTAAT
22230910 A
1 A
22230911 GACTTGCTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
30 11 0.41
31 16 0.59
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (30 bp):
ATCATTTTATTGAAATAAATGATAATTAAT
Found at i:22234440 original size:465 final size:466
Alignment explanation
Indices: 22233462--22234454 Score: 1154
Period size: 467 Copynumber: 2.1 Consensus size: 466
22233452 AGTTTGCTAT
* * * * *
22233462 ACGAAACAACATTTTACTATTATCGACCTATAATTTAGGTTGCATGAAGCAAGAGTTTAGGCTAG
1 ACGAAATAACATTTCACTATTATGGACCTAGAATTTAGGTTGCATGAAGCAAGAGTTTGGGCTAG
* * ** * ** * *
22233527 GCAAACTAGAATCTCATTGTTATGTAGCAAGATTTTGGGATGTACAGAGCGATATTTCATTGCTA
66 ACAAACTAGAATCTCATTATTATAAAGCAAGAGTTAAGGATGTACAGAACGAGATTTCATTGCTA
* * * * * *
22233592 TGGAGCACATGATTGAGTTGCTCAAAGTAGGGATTTGCCATTATTAAGTAGGAGTTTGAATTACT
131 TAGAGCACATGATTGAGTTGCTCAAAGTAGAGATCTGCCATTATAAAGTAGAAGTTCGAATTACT
* **
22233657 CAAAAAAGGATTTCACTATTTGGGTGGGAGTAAGAGCTTGGGCTAGGTGGAGAAAGATTTTATTT
196 CAAAAAAGGATTTCACTATTTGGGAGGGAACAAGAGCTTGGGCTAGGTGGAGAAAGATTTTATTT
* * *
22233722 TATGGAGCAAGAGTTCGAATTTAGCAGAATAGGTGTTCAAACTATGTCATGTAAGATTTCATTCA
261 TATGGAGCAAGAGTTCGAATTTAGCAGAATAGGAGTTCAAACTATGTCATGTAAGATTTCACTAA
* * * ****
22233787 TATGGAGGAGTTTGGGTTATGAAGAGTAAGATTTTACCACTATGGAGTTGGAGTAGAAGATGCTT
326 TACGGAGGAGTTTGGG-TATGAAGAGTAAGATTTCACCACTATGAAGCACAAGTAGAAGATGCTT
* ** * *
22233852 GGAGTAAGATTTATTTGTTATGGAGTGGAAGTTTGCATTGCTCGAAGTAGGATTTATAGAGCAAG
390 GGAGTAAGATTTAATTGTTATGGAGCAGAAGTTTGCATTGCTCAAAGTAAGATTTATAGAGCAAG
22233917 AACTAAGGCTGC
455 AACTAAGGCTGC
* *** * *
22233929 AAGGTGTAAGATTTCACTATTATGGACCTAGAATTTAGGTTGCATGAAGTAAGAGTTTGGGCTAG
1 ACGAAATAACATTTCACTATTATGGACCTAGAATTTAGGTTGCATGAAGCAAGAGTTTGGGCTAG
* * *
22233994 ACGAAGTATG-ATCTCATTATTATAAAGCAAGAGTTAAGGATGTGTC-GAACGAGATTTCATTGC
66 ACAAACTA-GAATCTCATTATTATAAAGCAAGAGTTAAGGATGT-ACAGAACGAGATTTCATTGC
** ** ** *
22234057 TATAGAGCATGTGATTGAGTTGCTTGAAGTA-AGAGTCTGTTATTATAAAGTAGAAGTTCGCATT
129 TATAGAGCACATGATTGAGTTGCTCAAAGTAGAGA-TCTGCCATTATAAAGTAGAAGTTCGAATT
* * * * * *
22234121 ACTTAGAGAAGGATTTCACTGTTTGGGAGGGAACAAGAGCTTGGG-TTGTGTGGAGGAAGATTTT
193 ACTCAAAAAAGGATTTCACTATTTGGGAGGGAACAAGAGCTTGGGCTAG-GTGGAGAAAGATTTT
* ** ** *
22234185 ATTGTTATGGAGCAAGAGTTTGGGTTTAGCA-AAGTAGGAGTTTGATCTATGTCATGTAAGATTT
257 ATT-TTATGGAGCAAGAGTTCGAATTTAGCAGAA-TAGGAGTTCAAACTATGTCATGTAAGATTT
* * * * * *
22234249 CACTAATACGGAGGAGTTT-GG-ATTAAGAGTAGGATTTCACCATTGTGAAGCACAATTTGAAGA
320 CACTAATACGGAGGAGTTTGGGTATGAAGAGTAAGATTTCACCACTATGAAGCACAAGTAGAAGA
*
22234312 TGCTTGGAGTAAGATTTAATTGTTATGGAGCAGAAGTTTGCATTGCTCAAAGTAAGATTTATGGA
385 TGCTTGGAGTAAGATTTAATTGTTATGGAGCAGAAGTTTGCATTGCTCAAAGTAAGATTTATAGA
* ** *
22234377 TCAAGATTTTAGGCTGC
450 GCAAGAACTAAGGCTGC
* * *
22234394 ACGAAATAATATTTCACTATTATGGACCTCGAATTTGGGTTGCATGAAGCAAGAGTTTGGG
1 ACGAAATAACATTTCACTATTATGGACCTAGAATTTAGGTTGCATGAAGCAAGAGTTTGGG
22234455 ATGTGCGGAG
Statistics
Matches: 435, Mismatches: 85, Indels: 14
0.81 0.16 0.03
Matches are distributed among these distances:
465 155 0.36
466 4 0.01
467 208 0.48
468 68 0.16
ACGTcount: A:0.31, C:0.10, G:0.26, T:0.32
Consensus pattern (466 bp):
ACGAAATAACATTTCACTATTATGGACCTAGAATTTAGGTTGCATGAAGCAAGAGTTTGGGCTAG
ACAAACTAGAATCTCATTATTATAAAGCAAGAGTTAAGGATGTACAGAACGAGATTTCATTGCTA
TAGAGCACATGATTGAGTTGCTCAAAGTAGAGATCTGCCATTATAAAGTAGAAGTTCGAATTACT
CAAAAAAGGATTTCACTATTTGGGAGGGAACAAGAGCTTGGGCTAGGTGGAGAAAGATTTTATTT
TATGGAGCAAGAGTTCGAATTTAGCAGAATAGGAGTTCAAACTATGTCATGTAAGATTTCACTAA
TACGGAGGAGTTTGGGTATGAAGAGTAAGATTTCACCACTATGAAGCACAAGTAGAAGATGCTTG
GAGTAAGATTTAATTGTTATGGAGCAGAAGTTTGCATTGCTCAAAGTAAGATTTATAGAGCAAGA
ACTAAGGCTGC
Found at i:22234676 original size:57 final size:57
Alignment explanation
Indices: 22234606--22234721 Score: 178
Period size: 57 Copynumber: 2.0 Consensus size: 57
22234596 GAAATGCAAA
* * * *
22234606 ATCTTAACTAATATATAATATTAGTATTTTAGGTAACTAATCTCCTAAGAATCAACT
1 ATCTTAACAAATATAGAATATCAATATTTTAGGTAACTAATCTCCTAAGAATCAACT
* *
22234663 ATCTTAACAAATATAGAATATCAATATTTTAGGTAACTAGTCTCCTAAGAATCAGCT
1 ATCTTAACAAATATAGAATATCAATATTTTAGGTAACTAATCTCCTAAGAATCAACT
22234720 AT
1 AT
22234722 ATAGTGTGAT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.41, C:0.15, G:0.09, T:0.36
Consensus pattern (57 bp):
ATCTTAACAAATATAGAATATCAATATTTTAGGTAACTAATCTCCTAAGAATCAACT
Found at i:22246948 original size:21 final size:21
Alignment explanation
Indices: 22246908--22246948 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
22246898 ATTTTTATTT
22246908 TTATTTTTTTATCCTTATGTGA
1 TTATTTTTTTAT-CTTATGTGA
22246930 TTATTATTTTTAT-TTATGT
1 TTATT-TTTTTATCTTATGT
22246949 TGGTATTATG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.33
22 5 0.28
23 7 0.39
ACGTcount: A:0.20, C:0.05, G:0.07, T:0.68
Consensus pattern (21 bp):
TTATTTTTTTATCTTATGTGA
Found at i:22253367 original size:138 final size:138
Alignment explanation
Indices: 22253114--22253462 Score: 401
Period size: 138 Copynumber: 2.5 Consensus size: 138
22253104 TCTCAAATCC
* * * * * * *
22253114 TATACCCTTGAAGTAGTAGTGGGTCAGATTGAAACTAAAGTGACGAATCATCTTTCCCTGAAGTT
1 TATACCCCTGAAGTTGTAGTGGGTCGGAATGAAACTAAAGTGACGAATCATATCTCCCTAAAGTT
** ** **
22253179 GTAGTGGAGCAAGATGAAACAACAAATCATATATTTCTGAAGTTGTAGTGGATCGGATTGAAGAT
66 GTAGTGGAGCAAGATGAAACAACAAATCATATATCCCTGAAGTTACAGTGGATCAAATTGAAGAT
*
22253244 ATAATTCT
131 ACAATTCT
* * ** *
22253252 TATACCCCTGAAGTTGTAGTGGGTCGGAATGAAATTATAGTGGTGAATCTTATCTCCCTAAAGTT
1 TATACCCCTGAAGTTGTAGTGGGTCGGAATGAAACTAAAGTGACGAATCATATCTCCCTAAAGTT
* * * * *
22253317 GTAGTGTAGCAAGATGAAGCTACAAATCCTATATCCCTGAAGTTACAGTGGATCAAATTGAAGCT
66 GTAGTGGAGCAAGATGAAACAACAAATCATATATCCCTGAAGTTACAGTGGATCAAATTGAAGAT
22253382 ACAATTCT
131 ACAATTCT
* * * * * * * * *
22253390 TATACCTCTGAAGTTGCAGTGGGTCGAAATGAAACTACAGTGACAAATCCTATATCTCTGAAGTT
1 TATACCCCTGAAGTTGTAGTGGGTCGGAATGAAACTAAAGTGACGAATCATATCTCCCTAAAGTT
22253455 GTAGTGGA
66 GTAGTGGA
22253463 TCAAATTGAA
Statistics
Matches: 174, Mismatches: 37, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
138 174 1.00
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (138 bp):
TATACCCCTGAAGTTGTAGTGGGTCGGAATGAAACTAAAGTGACGAATCATATCTCCCTAAAGTT
GTAGTGGAGCAAGATGAAACAACAAATCATATATCCCTGAAGTTACAGTGGATCAAATTGAAGAT
ACAATTCT
Found at i:22253379 original size:44 final size:44
Alignment explanation
Indices: 22253331--22253986 Score: 159
Period size: 44 Copynumber: 14.1 Consensus size: 44
22253321 TGTAGCAAGA
*
22253331 TGAAGCTACAAATCCTATATCCCTGAAGTTACAGTGGATCAAAT
1 TGAAGCTACAAATCCTATATCCCTGAAGTTGCAGTGGATCAAAT
* * *
22253375 TGAAGCTACAATTCTTATA-CCTCTGAAGTTGCAGTGGGTCGAAA-
1 TGAAGCTACAAATCCTATATCC-CTGAAGTTGCAGTGGATC-AAAT
* * *
22253419 TGAAACTACAGTGACAAATCCTATATCTCTGAAGTTGTAGTGGATCAAAT
1 TG-AA--GC--T-ACAAATCCTATATCCCTGAAGTTGCAGTGGATCAAAT
** * * * * * **
22253469 TGAAGCTGTAATTCTTATAACCCTGAAGTTGCAATGGGTCGGAT
1 TGAAGCTACAAATCCTATATCCCTGAAGTTGCAGTGGATCAAAT
* * * * * *
22253513 TGAATCTACTATAGCAAGTCTTATCTCCCTGAAGCTGTAGTGGAGCAAGA-
1 TGAAGCTAC---A--AA-TCCTATATCCCTGAAGTTGCAGTGGATCAA-AT
* * * * *
22253563 TGGAGCTACAAATCCTATACCCCTGAAGTTGCAATGGGTCAGAT
1 TGAAGCTACAAATCCTATATCCCTGAAGTTGCAGTGGATCAAAT
* * * * * * * * *
22253607 TAAAGTTACCATAGCGAGTCTTATCTCCCTAAAGTTACAATGAAGCAAGA-
1 TGAAGCTA-CA-A---A-TCCTATATCCCTGAAGTTGCAGTGGATCAA-AT
* * * * * *
22253657 TGAAGTTACAAACCCTATA-CCCTTTAAGTTGTAGTAGG-TCAGAC
1 TGAAGCTACAAATCCTATATCCC-TGAAGTTGCAGT-GGATCAAAT
* * * **
22253701 TAAAGTTACCATAACGAATCTTATCCCCCTGAAGTT-CAGTGGAGT-AAGAT
1 TGAAG----C-T-ACAAATCCTATATCCCTGAAGTTGCAGTGGA-TCAA-AT
* ** *
22253751 TG-AGCTACAAATCCTATACCCCTGAAGTTATAGTGGGTCAAAT
1 TGAAGCTACAAATCCTATATCCCTGAAGTTGCAGTGGATCAAAT
* * * * ** *
22253794 TGAAGTTACCATAGCGAATCTTATCTCCCTGAAGTTGTAGTAAAGCAAGA-
1 TGAAG----C-TA-CAAATCCTATATCCCTGAAGTTGCAGTGGATCAA-AT
* * * *
22253844 TGAAGCTACAAATCCTATACCCCTGAAGTTGTAGTGGGTCAGAT
1 TGAAGCTACAAATCCTATATCCCTGAAGTTGCAGTGGATCAAAT
* * * *
22253888 TGAAACTACAAATGGCGAATCT-TATCTCTCTAAAGTTACAGTGGAGCAAGA-
1 TGAAGCTACAAAT--C----CTATATC-C-CTGAAGTTGCAGTGGATCAA-AT
* * *
22253939 TGAAGCTACAAATCCTATACCCCTGAAGTTCCAGTAGG-TCAGAT
1 TGAAGCTACAAATCCTATATCCCTGAAGTTGCAGT-GGATCAAAT
22253983 TGAA
1 TGAA
22253987 ATTACCATAG
Statistics
Matches: 434, Mismatches: 117, Indels: 122
0.64 0.17 0.18
Matches are distributed among these distances:
43 34 0.08
44 175 0.40
45 20 0.05
46 6 0.01
47 4 0.01
48 4 0.01
49 23 0.05
50 134 0.31
51 33 0.08
52 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.28
Consensus pattern (44 bp):
TGAAGCTACAAATCCTATATCCCTGAAGTTGCAGTGGATCAAAT
Found at i:22253515 original size:138 final size:138
Alignment explanation
Indices: 22253114--22253521 Score: 388
Period size: 138 Copynumber: 3.0 Consensus size: 138
22253104 TCTCAAATCC
* * * * * * * * * *
22253114 TATACCCTTGAAGTAGTAGTGGGTC-AGATTGAAACTAAAGTGACGAATCATCTTTCCCTGAAGT
1 TATACCCCTGAAGTTGCAGTGGGTCGA-AATGAAACTACAGTGACAAATCCTATATCCCTAAAGT
* * * *** * *
22253178 TGTAGTGGAGCAAGATGAAACAACAAATCATATATTTCTGAAGTTGTAGTGGATCGGATTGAAGA
65 TGTAGTGGAGCAAGATGAAGCTACAAATCCTATAACCCTGAAGTTGCAGTGGATCGGATTGAAGC
*
22253243 TATAATTCT
130 TACAATTCT
* * * * *** * *
22253252 TATACCCCTGAAGTTGTAGTGGGTCGGAATGAAATTATAGTGGTGAATCTTATCTCCCTAAAGTT
1 TATACCCCTGAAGTTGCAGTGGGTCGAAATGAAACTACAGTGACAAATCCTATATCCCTAAAGTT
* * * **
22253317 GTAGTGTAGCAAGATGAAGCTACAAATCCTATATCCCTGAAGTTACAGTGGATCAAATTGAAGCT
66 GTAGTGGAGCAAGATGAAGCTACAAATCCTATAACCCTGAAGTTGCAGTGGATCGGATTGAAGCT
22253382 ACAATTCT
131 ACAATTCT
* * *
22253390 TATACCTCTGAAGTTGCAGTGGGTCGAAATGAAACTACAGTGACAAATCCTATATCTCTGAAGTT
1 TATACCCCTGAAGTTGCAGTGGGTCGAAATGAAACTACAGTGACAAATCCTATATCCCTAAAGTT
* ** * * * * *
22253455 GTAGTGGATCAA-ATTGAAGCTGTAATTCTTATAACCCTGAAGTTGCAATGGGTCGGATTGAATC
66 GTAGTGGAGCAAGA-TGAAGCTACAAATCCTATAACCCTGAAGTTGCAGTGGATCGGATTGAAGC
22253519 TAC
130 TAC
22253522 TATAGCAAGT
Statistics
Matches: 219, Mismatches: 49, Indels: 4
0.81 0.18 0.01
Matches are distributed among these distances:
137 1 0.00
138 218 1.00
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.30
Consensus pattern (138 bp):
TATACCCCTGAAGTTGCAGTGGGTCGAAATGAAACTACAGTGACAAATCCTATATCCCTAAAGTT
GTAGTGGAGCAAGATGAAGCTACAAATCCTATAACCCTGAAGTTGCAGTGGATCGGATTGAAGCT
ACAATTCT
Found at i:22253621 original size:94 final size:93
Alignment explanation
Indices: 22253341--22254019 Score: 616
Period size: 94 Copynumber: 7.2 Consensus size: 93
22253331 TGAAGCTACA
* * * * * * *
22253341 AATCCTATATCCCTGAAGTTACAGTGGATCAA-ATTGAAGCTACAATTCTTATACCTCTGAAGTT
1 AATCTTATCTCCCTGAAGTTATAGTGGAGCAAGA-TGAAGCTACAAATCCTATACCCCTGAAGTT
* * * *
22253405 GCAGTGGGTCGAAATGAAACTA-CAGT-GACA
65 GCAGTGGGTC-AGATTAAATTACCA-TAG-CG
* * * * * ** * * *
22253435 AATCCTATATCTCTGAAGTTGTAGTGGATCAA-ATTGAAGCTGTAATTCTTATAACCCTGAAGTT
1 AATCTTATCTCCCTGAAGTTATAGTGGAGCAAGA-TGAAGCTACAAATCCTATACCCCTGAAGTT
* * * *
22253499 GCAATGGGTCGGATTGAATCTACTATAGC-
65 GCAGTGGGTCAGATTAAAT-TACCATAGCG
* * *
22253528 AAGTCTTATCTCCCTGAAGCTGTAGTGGAGCAAGATGGAGCTACAAATCCTATACCCCTGAAGTT
1 AA-TCTTATCTCCCTGAAGTTATAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTT
*
22253593 GCAATGGGTCAGATTAAAGTTACCATAGCG
65 GCAGTGGGTCAGATTAAA-TTACCATAGCG
* * * * * * * * *
22253623 AGTCTTATCTCCCTAAAGTTACAATGAAGCAAGATGAAGTTACAAACCCTATACCCTTTAAGTTG
1 AATCTTATCTCCCTGAAGTTATAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTG
* * * *
22253688 TAGTAGGTCAGACTAAAGTTACCATAACG
66 CAGTGGGTCAGATTAAA-TTACCATAGCG
* * *
22253717 AATCTTATCCCCCTGAAGTT-CAGTGGAGTAAGATTG-AGCTACAAATCCTATACCCCTGAAGTT
1 AATCTTATCTCCCTGAAGTTATAGTGGAGCAAGA-TGAAGCTACAAATCCTATACCCCTGAAGTT
** * *
22253780 ATAGTGGGTCAAATTGAAGTTACCATAGCG
65 GCAGTGGGTCAGATT-AAATTACCATAGCG
* **
22253810 AATCTTATCTCCCTGAAGTTGTAGTAAAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTATAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTG
* * * *
22253875 TAGTGGGTCAGATTGAAACTACAAATGGCG
66 CAGTGGGTCAGATT-AAATTAC-CATAGCG
* * * *
22253905 AATCTTATCTCTCTAAAGTTACAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTC
1 AATCTTATCTCCCTGAAGTTATAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTG
*
22253970 CAGTAGGTCAGATTGAAATTACCATAGCG
66 CAGTGGGTCAGATT-AAATTACCATAGCG
* *
22253999 AAACTTATCTCTCTGAAGTTA
1 AATCTTATCTCCCTGAAGTTA
22254020 CAGTAGGTCG
Statistics
Matches: 487, Mismatches: 86, Indels: 24
0.82 0.14 0.04
Matches are distributed among these distances:
93 81 0.17
94 319 0.66
95 87 0.18
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (93 bp):
AATCTTATCTCCCTGAAGTTATAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTG
CAGTGGGTCAGATTAAATTACCATAGCG
Found at i:22253771 original size:187 final size:188
Alignment explanation
Indices: 22253531--22254021 Score: 623
Period size: 187 Copynumber: 2.6 Consensus size: 188
22253521 CTATAGCAAG
* *
22253531 TCTTATCTCCCTGAAGCTGT-AGTGGAGCAAGATGGAGCTACAAATCCTATACCCCTGAAGTTGC
1 TCTTATCTCCCTGAAG-T-TCAGTGGAGCAAGATTGAGCTACAAATCCTATACCCCTGAAGTTAC
* * * *
22253595 AATGGGTCAGATTAAAGTTACCATAGCGAGTCTTATCTCCCTAAAGTTACAATGAAGCAAGATGA
64 AGTGGGTCAGATTAAAGTTACCATAGCGAATCTTATCTCCCTGAAGTTACAATAAAGCAAGATGA
* * * * *
22253660 AGTTACAAACCCTATACCCTTTAAGTTGTAGTAGGTCAGACT-AAAGTTAC-CATAACGAA
129 AGCTACAAACCCTATACCCCTGAAGTTGTAGTAGGTCAGACTGAAA-CTACAAATAACGAA
* * *
22253719 TCTTATCCCCCTGAAGTTCAGTGGAGTAAGATTGAGCTACAAATCCTATACCCCTGAAGTTATAG
1 TCTTATCTCCCTGAAGTTCAGTGGAGCAAGATTGAGCTACAAATCCTATACCCCTGAAGTTACAG
* * ** *
22253784 TGGGTCAAATTGAAGTTACCATAGCGAATCTTATCTCCCTGAAGTTGTAGTAAAGCAAGATGAAG
66 TGGGTCAGATTAAAGTTACCATAGCGAATCTTATCTCCCTGAAGTTACAATAAAGCAAGATGAAG
* * * **
22253849 CTACAAATCCTATACCCCTGAAGTTGTAGTGGGTCAGATTGAAACTACAAATGGCGAA
131 CTACAAACCCTATACCCCTGAAGTTGTAGTAGGTCAGACTGAAACTACAAATAACGAA
* * *
22253907 TCTTATCTCTCTAAAGTTACAGTGGAGCAAGA-TGAAGCTACAAATCCTATACCCCTGAAGTTCC
1 TCTTATCTCCCTGAAGTT-CAGTGGAGCAAGATTG-AGCTACAAATCCTATACCCCTGAAGTTAC
* * *
22253971 AGTAGGTCAGATTGAAA-TTACCATAGCGAAACTTATCTCTCTGAAGTTACA
64 AGTGGGTCAGATT-AAAGTTACCATAGCGAATCTTATCTCCCTGAAGTTACA
22254022 GTAGGTCGGA
Statistics
Matches: 260, Mismatches: 37, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
186 1 0.00
187 136 0.52
188 41 0.16
189 80 0.31
190 2 0.01
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (188 bp):
TCTTATCTCCCTGAAGTTCAGTGGAGCAAGATTGAGCTACAAATCCTATACCCCTGAAGTTACAG
TGGGTCAGATTAAAGTTACCATAGCGAATCTTATCTCCCTGAAGTTACAATAAAGCAAGATGAAG
CTACAAACCCTATACCCCTGAAGTTGTAGTAGGTCAGACTGAAACTACAAATAACGAA
Found at i:22254036 original size:50 final size:50
Alignment explanation
Indices: 22253959--22254073 Score: 194
Period size: 50 Copynumber: 2.3 Consensus size: 50
22253949 AATCCTATAC
*
22253959 CCCTGAAGTTCCAGTAGGTCAGATTGAAATTACCATAGCGAAACTTATCT
1 CCCTGAAGTTACAGTAGGTCAGATTGAAATTACCATAGCGAAACTTATCT
* *
22254009 CTCTGAAGTTACAGTAGGTCGGATTGAAATTACCATAGCGAAACTTATCT
1 CCCTGAAGTTACAGTAGGTCAGATTGAAATTACCATAGCGAAACTTATCT
*
22254059 CCCTGAAGTTGCAGT
1 CCCTGAAGTTACAGT
22254074 GGAATAAAAT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 60 1.00
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (50 bp):
CCCTGAAGTTACAGTAGGTCAGATTGAAATTACCATAGCGAAACTTATCT
Found at i:22254162 original size:144 final size:144
Alignment explanation
Indices: 22253866--22254162 Score: 321
Period size: 144 Copynumber: 2.1 Consensus size: 144
22253856 TCCTATACCC
** * * * * * * *
22253866 CTGAAGTTGTAGTGGGTCAGATTGAAACTACAAATGGCGAATCTTATCTCTCTAAAGTTACAGTG
1 CTGAAGTTACAGTAGGTCGGATTGAAATTAC-CATAGCGAAACTTATCTCCCTAAAGTTACAGTG
* * * * * * *
22253931 GAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTCCAGTAGGTCAGATTGAAATTACCATA
65 GAACAAAATGAAACTACAAATCCTACACCCCTGAAGTTCCAGTAGGTCAGATTGAAACTACAACA
*
22253996 GCGAAACTTATCTCT
130 ACGAAACTTATCTCT
* *
22254011 CTGAAGTTACAGTAGGTCGGATTGAAATTACCATAGCGAAACTTATCTCCCTGAAGTTGCAGTGG
1 CTGAAGTTACAGTAGGTCGGATTGAAATTACCATAGCGAAACTTATCTCCCTAAAGTTACAGTGG
* ** * *
22254076 AATAAAATGAAACTACAAATCCTACACCCCTGAAGTTGTAGT-GAGTCGGGTTGAAACTACAACA
66 AACAAAATGAAACTACAAATCCTACACCCCTGAAGTTCCAGTAG-GTCAGATTGAAACTACAACA
22254140 AC-AAATCTTATCTC-
130 ACGAAA-CTTATCTCT
22254154 CTTGAAGTT
1 C-TGAAGTT
22254163 GCAATAGAGC
Statistics
Matches: 125, Mismatches: 24, Indels: 7
0.80 0.15 0.04
Matches are distributed among these distances:
143 5 0.04
144 94 0.75
145 26 0.21
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.27
Consensus pattern (144 bp):
CTGAAGTTACAGTAGGTCGGATTGAAATTACCATAGCGAAACTTATCTCCCTAAAGTTACAGTGG
AACAAAATGAAACTACAAATCCTACACCCCTGAAGTTCCAGTAGGTCAGATTGAAACTACAACAA
CGAAACTTATCTCT
Found at i:22271410 original size:9 final size:9
Alignment explanation
Indices: 22271396--22271420 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
22271386 AACATTTATG
22271396 TTTTTTTAA
1 TTTTTTTAA
22271405 TTTTTTTAA
1 TTTTTTTAA
22271414 TTTTTTT
1 TTTTTTT
22271421 TTCTTTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (9 bp):
TTTTTTTAA
Found at i:22274146 original size:18 final size:18
Alignment explanation
Indices: 22274125--22274169 Score: 90
Period size: 18 Copynumber: 2.5 Consensus size: 18
22274115 CATTCTTCTC
22274125 CCCTTTCCCCTTCTCCTT
1 CCCTTTCCCCTTCTCCTT
22274143 CCCTTTCCCCTTCTCCTT
1 CCCTTTCCCCTTCTCCTT
22274161 CCCTTTCCC
1 CCCTTTCCC
22274170 GTTTCGAAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.00, C:0.58, G:0.00, T:0.42
Consensus pattern (18 bp):
CCCTTTCCCCTTCTCCTT
Found at i:22275345 original size:35 final size:34
Alignment explanation
Indices: 22275306--22275371 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
22275296 CAAACACCAG
*
22275306 AAAACATTTTCCAGTAAGTCATTTTACAGAAATGT
1 AAAACATTTTCCAG-AAATCATTTTACAGAAATGT
*
22275341 AAAACATTTTCCAGAAATCATTTTACGGAAA
1 AAAACATTTTCCAGAAATCATTTTACAGAAA
22275372 ATATTTTACT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 15 0.52
35 14 0.48
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.32
Consensus pattern (34 bp):
AAAACATTTTCCAGAAATCATTTTACAGAAATGT
Found at i:22275476 original size:24 final size:24
Alignment explanation
Indices: 22275449--22275498 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
22275439 TCTACCAAAG
22275449 ATTTTAAAGCATGAAGTCAAAACA
1 ATTTTAAAGCATGAAGTCAAAACA
22275473 ATTTTAAAGCATGAAGTCAAAACA
1 ATTTTAAAGCATGAAGTCAAAACA
22275497 AT
1 AT
22275499 CACTTATTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.26
Consensus pattern (24 bp):
ATTTTAAAGCATGAAGTCAAAACA
Found at i:22277930 original size:18 final size:18
Alignment explanation
Indices: 22277909--22277951 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
22277899 ATTTTACATA
*
22277909 TTTTAAATTATTCTAATT
1 TTTTAAATTATTATAATT
* *
22277927 TTTTAAGTTATTATTATT
1 TTTTAAATTATTATAATT
22277945 TTTTAAA
1 TTTTAAA
22277952 AATATATAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (18 bp):
TTTTAAATTATTATAATT
Found at i:22278081 original size:25 final size:25
Alignment explanation
Indices: 22278053--22278101 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
22278043 AACTGTAATA
22278053 TATAATTTATAAATATATAAAAACG
1 TATAATTTATAAATATATAAAAACG
* * *
22278078 TATAGTTTATAAATTTATATAAAC
1 TATAATTTATAAATATATAAAAAC
22278102 ACATAAAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.41
Consensus pattern (25 bp):
TATAATTTATAAATATATAAAAACG
Found at i:22279576 original size:32 final size:32
Alignment explanation
Indices: 22279535--22279603 Score: 95
Period size: 32 Copynumber: 2.2 Consensus size: 32
22279525 TAAATGCTAT
* *
22279535 TTAAATAATTGACTATAATGATACATAAAATA
1 TTAAATAATTGAATATAATGATACACAAAATA
* *
22279567 TTAAATAATTTAATATAATGATATACAAAATA
1 TTAAATAATTGAATATAATGATACACAAAATA
22279599 -TAAAT
1 TTAAAT
22279604 TAATCTAACT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
31 5 0.15
32 28 0.85
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.36
Consensus pattern (32 bp):
TTAAATAATTGAATATAATGATACACAAAATA
Found at i:22280200 original size:25 final size:27
Alignment explanation
Indices: 22280164--22280214 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 27
22280154 CAAGAAATGC
22280164 AATAAAATTA-TTAAAAAAT-TAAAAA
1 AATAAAATTATTTAAAAAATATAAAAA
*
22280189 AATATAAA-TATTTAGAAAATATAAAA
1 AATA-AAATTATTTAAAAAATATAAAA
22280215 CCAAGAGGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
25 6 0.27
26 11 0.50
27 5 0.23
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (27 bp):
AATAAAATTATTTAAAAAATATAAAAA
Found at i:22289054 original size:18 final size:18
Alignment explanation
Indices: 22289017--22289054 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
22289007 TAAATGATGA
22289017 ATTTAAAATATTAGTTGTT
1 ATTTAAAATATTA-TTGTT
22289036 ATTTAAAAGTATT-TTGTT
1 ATTTAAAA-TATTATTGTT
22289054 A
1 A
22289055 AGTGATTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 8 0.44
20 4 0.22
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.53
Consensus pattern (18 bp):
ATTTAAAATATTATTGTT
Found at i:22289769 original size:25 final size:24
Alignment explanation
Indices: 22289741--22289800 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
22289731 AGCGTCCCGA
22289741 TATATGGCTCTCCAGAACTTCCTGT
1 TATATGGCTCTCC-GAACTTCCTGT
* * *
22289766 TATATGGTTCTTGCGAGCTTCCTGT
1 TATATGGCTC-TCCGAACTTCCTGT
22289791 T-TATGGCTCT
1 TATATGGCTCT
22289801 TATGAGCTTC
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
23 1 0.03
24 7 0.23
25 20 0.67
26 2 0.07
ACGTcount: A:0.15, C:0.23, G:0.20, T:0.42
Consensus pattern (24 bp):
TATATGGCTCTCCGAACTTCCTGT
Found at i:22289826 original size:25 final size:24
Alignment explanation
Indices: 22289793--22289934 Score: 126
Period size: 25 Copynumber: 5.8 Consensus size: 24
22289783 CTTCCTGTTT
22289793 ATGGCTCTTATGAGCTTCCCGATA
1 ATGGCTCTTATGAGCTTCCCGATA
**
22289817 ATTGGCTCTTCGGAGCTTCCCGATA
1 A-TGGCTCTTATGAGCTTCCCGATA
* *
22289842 ACTGACTCTTATGAGCTTCCTGATTA
1 A-TGGCTCTTATGAGCTTCCCGA-TA
**
22289868 ATGGCTCTTCA-GAGCTTCCTAATA
1 ATGGCTCTT-ATGAGCTTCCCGATA
* * * * *
22289892 TTGGCTCGCT-TGAACTTTCCGATT
1 ATGGCTC-TTATGAGCTTCCCGATA
22289916 ATGGCTCTTATGAGCTTCC
1 ATGGCTCTTATGAGCTTCC
22289935 TATTATACAG
Statistics
Matches: 92, Mismatches: 20, Indels: 12
0.74 0.16 0.10
Matches are distributed among these distances:
23 1 0.01
24 30 0.33
25 57 0.62
26 4 0.04
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.36
Consensus pattern (24 bp):
ATGGCTCTTATGAGCTTCCCGATA
Found at i:22289953 original size:25 final size:26
Alignment explanation
Indices: 22289925--22289984 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 26
22289915 TATGGCTCTT
*
22289925 ATGAGCTTCCT-ATTATACAGCTCGA
1 ATGAGCTTCCTCATTATACAGCTCAA
**
22289950 ATGAGCTT-CTCATTATATGGCTCAA
1 ATGAGCTTCCTCATTATACAGCTCAA
*
22289975 AAGAGCTTCC
1 ATGAGCTTCC
22289985 CGTTTACATG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 2 0.07
25 26 0.90
26 1 0.03
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
ATGAGCTTCCTCATTATACAGCTCAA
Found at i:22294072 original size:43 final size:44
Alignment explanation
Indices: 22294024--22294121 Score: 126
Period size: 43 Copynumber: 2.2 Consensus size: 44
22294014 GTGTTTTCCC
* * *
22294024 ACAAACGCCATTATAGAACATGATCTTTAGTAGCGATTTTA-CT
1 ACAAACGCCACTAAAGAACATGATCTTTAGTAGCGATTCTAGCT
* * *
22294067 ACAAACGCCGCTAAAGAACATGATCTTTTGTGGCGATTCTAGCT
1 ACAAACGCCACTAAAGAACATGATCTTTAGTAGCGATTCTAGCT
*
22294111 ACAAACACCAC
1 ACAAACGCCAC
22294122 AACATGCTCG
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
43 35 0.76
44 11 0.24
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (44 bp):
ACAAACGCCACTAAAGAACATGATCTTTAGTAGCGATTCTAGCT
Found at i:22295444 original size:19 final size:19
Alignment explanation
Indices: 22295416--22295460 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
22295406 CATATTTTTC
* *
22295416 AAAAAA-TATAAATATTAT
1 AAAAAATTATAAAGAATAT
22295434 AAAAAATTATAAAGAATAT
1 AAAAAATTATAAAGAATAT
22295453 ATAAAAAT
1 A-AAAAAT
22295461 GTTAAGAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 6 0.26
19 11 0.48
20 6 0.26
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (19 bp):
AAAAAATTATAAAGAATAT
Found at i:22299893 original size:60 final size:59
Alignment explanation
Indices: 22299783--22299896 Score: 151
Period size: 60 Copynumber: 1.9 Consensus size: 59
22299773 TTTTAGGAAT
* * *
22299783 TAACTTTGATAAAAAAAAGTTAAACTCCCAATGAGAAAATATTTGCCAAGTTCAAGGCC
1 TAACTTGGATAAAAAAAAGTTAAACTCCCAATGAGAAAATAATTACCAAGTTCAAGGCC
*
22299842 TAACTTGGATAAAAGAAAAGTTTAAAC-CCCAAT-ATGAAAATAATTATCAAGTTCA
1 TAACTTGGATAAAA-AAAAG-TTAAACTCCCAATGA-GAAAATAATTACCAAGTTCA
22299897 GTGTTTAACT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
59 14 0.29
60 28 0.58
61 6 0.12
ACGTcount: A:0.46, C:0.15, G:0.12, T:0.26
Consensus pattern (59 bp):
TAACTTGGATAAAAAAAAGTTAAACTCCCAATGAGAAAATAATTACCAAGTTCAAGGCC
Found at i:22299906 original size:60 final size:59
Alignment explanation
Indices: 22299782--22299944 Score: 149
Period size: 60 Copynumber: 2.8 Consensus size: 59
22299772 TTTTTAGGAA
* * *
22299782 TTAACTTTGATAAAAAAAAG-TTAAACTCCCAATGA-GAAAATATTTGCCAAGTTCAAGGC
1 TTAACTTGGATAAAAAAAAGTTTAAAC-CCCAAT-ATGAAAATAATTACCAAGTTCAAGGC
* * *
22299841 CTAACTTGGATAAAAGAAAAGTTTAAACCCCAATATGAAAATAATTATCAAGTTC-AGTGT
1 TTAACTTGGATAAAA-AAAAGTTTAAACCCCAATATGAAAATAATTACCAAGTTCAAG-GC
* * *
22299901 TTAACTTAGG-TTAAAAAAA-TTCAAGCCCCAATATGAGAAA-AATT
1 TTAACTT-GGATAAAAAAAAGTTTAAACCCCAATATGA-AAATAATT
22299945 GCCTTCGCAG
Statistics
Matches: 88, Mismatches: 10, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
58 19 0.22
59 23 0.26
60 38 0.43
61 8 0.09
ACGTcount: A:0.45, C:0.14, G:0.13, T:0.28
Consensus pattern (59 bp):
TTAACTTGGATAAAAAAAAGTTTAAACCCCAATATGAAAATAATTACCAAGTTCAAGGC
Found at i:22302414 original size:21 final size:21
Alignment explanation
Indices: 22302384--22302425 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
22302374 TTTACATTAG
22302384 TGTCTAGAGA-CATCAAGAACA
1 TGTCTAGAGACCAT-AAGAACA
*
22302405 TGTCTTGAGACCATAAGAACA
1 TGTCTAGAGACCATAAGAACA
22302426 AATTTTATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.21
Consensus pattern (21 bp):
TGTCTAGAGACCATAAGAACA
Found at i:22302661 original size:23 final size:22
Alignment explanation
Indices: 22302635--22302678 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
22302625 ATACAAAAAC
*
22302635 AAGGGAACATTGCCTCGAGACAT
1 AAGGGAA-AATGCCTCGAGACAT
*
22302658 AAGGGAAAATGTCTCGAGACA
1 AAGGGAAAATGCCTCGAGACA
22302679 AAAATCCATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.39, C:0.18, G:0.27, T:0.16
Consensus pattern (22 bp):
AAGGGAAAATGCCTCGAGACAT
Found at i:22304460 original size:11 final size:11
Alignment explanation
Indices: 22304444--22304531 Score: 71
Period size: 11 Copynumber: 8.4 Consensus size: 11
22304434 CTCTATTATT
22304444 CTCTCAATTTC
1 CTCTCAATTTC
22304455 CTCTCAATTTC
1 CTCTCAATTTC
22304466 CT-TCCAAATTT-
1 CTCT-C-AATTTC
*
22304477 CTCTCAA-ATC
1 CTCTCAATTTC
*
22304487 C-CT--ATTTA
1 CTCTCAATTTC
* *
22304495 ATCTCAATTTG
1 CTCTCAATTTC
*
22304506 ATCTCAATTTC
1 CTCTCAATTTC
22304517 CTCTCAATTTC
1 CTCTCAATTTC
22304528 CTCT
1 CTCT
22304532 TAAACCCCTA
Statistics
Matches: 62, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
7 1 0.02
8 1 0.02
9 5 0.08
10 4 0.06
11 45 0.73
12 6 0.10
ACGTcount: A:0.23, C:0.32, G:0.01, T:0.44
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:22304513 original size:51 final size:51
Alignment explanation
Indices: 22304445--22304544 Score: 132
Period size: 51 Copynumber: 2.0 Consensus size: 51
22304435 TCTATTATTC
* *
22304445 TCTCAATTTCCTCTCAATTTCCT-TCCAAATTT-CTCTCAAATCCCTATTTAA
1 TCTCAATTTCATCTCAATTTCCTCT-C-AATTTCCTCTCAAACCCCTATTTAA
* *
22304496 TCTCAATTTGATCTCAATTTCCTCTCAATTTCCTCTTAAACCCCTATTT
1 TCTCAATTTCATCTCAATTTCCTCTCAATTTCCTCTCAAACCCCTATTT
22304545 TAAAATTATT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
50 5 0.12
51 37 0.86
52 1 0.02
ACGTcount: A:0.24, C:0.31, G:0.01, T:0.44
Consensus pattern (51 bp):
TCTCAATTTCATCTCAATTTCCTCTCAATTTCCTCTCAAACCCCTATTTAA
Found at i:22306149 original size:18 final size:18
Alignment explanation
Indices: 22306126--22306168 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
22306116 TGCCAGATGC
* *
22306126 GTATCCTAGCCCTTTTAT
1 GTATCCTAACCCTTATAT
22306144 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
22306162 GTTTCCT
1 GTATCCT
22306169 TTTCTGAGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.19, C:0.28, G:0.09, T:0.44
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:22306455 original size:21 final size:21
Alignment explanation
Indices: 22306409--22306456 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
22306399 CCAACACCGA
*
22306409 CAACCAGATACCCTACCAGAG
1 CAACCAGATACCCCACCAGAG
* *
22306430 GAACCAGA-ATCCCCACCGGAG
1 CAACCAGATA-CCCCACCAGAG
22306451 CAACCA
1 CAACCA
22306457 CAACCCCCGA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 1 0.05
21 21 0.95
ACGTcount: A:0.38, C:0.40, G:0.17, T:0.06
Consensus pattern (21 bp):
CAACCAGATACCCCACCAGAG
Found at i:22307479 original size:27 final size:28
Alignment explanation
Indices: 22307423--22307480 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
22307413 AATTTTAAAA
* * *
22307423 TATTTTTAAAATACTTTTTTTATTCTTT
1 TATTTTTAAAATAATTTTTTTAGTCGTT
*
22307451 TATTTTTAAAATAATTTTTTTGGT-GTT
1 TATTTTTAAAATAATTTTTTTAGTCGTT
22307478 TAT
1 TAT
22307481 GGGCTTAGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
27 5 0.19
28 21 0.81
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.66
Consensus pattern (28 bp):
TATTTTTAAAATAATTTTTTTAGTCGTT
Found at i:22315055 original size:15 final size:17
Alignment explanation
Indices: 22315035--22315071 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
22315025 ATAAATATGA
22315035 TATTTTT-ATTTCT-TT
1 TATTTTTAATTTCTGTT
*
22315050 TATTTTTAATTTTTGTT
1 TATTTTTAATTTCTGTT
22315067 TATTT
1 TATTT
22315072 ATTGTTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 7 0.37
16 5 0.26
17 7 0.37
ACGTcount: A:0.16, C:0.03, G:0.03, T:0.78
Consensus pattern (17 bp):
TATTTTTAATTTCTGTT
Found at i:22315099 original size:30 final size:26
Alignment explanation
Indices: 22315037--22315101 Score: 76
Period size: 26 Copynumber: 2.3 Consensus size: 26
22315027 AAATATGATA
*
22315037 TTTTTATTTCTTTTATTTTTAATTTT
1 TTTTTATTTATTTTATTTTTAATTTT
*
22315063 TGTTTATTTATTGTTATTTGTTTAATTTCT
1 TTTTTATTTATT-TTA-TT-TTTAATTT-T
22315093 TTTTTATTT
1 TTTTTATTT
22315102 GTAAGTTGTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
26 10 0.31
27 3 0.09
28 2 0.06
29 8 0.25
30 9 0.28
ACGTcount: A:0.15, C:0.03, G:0.05, T:0.77
Consensus pattern (26 bp):
TTTTTATTTATTTTATTTTTAATTTT
Found at i:22319090 original size:20 final size:20
Alignment explanation
Indices: 22319065--22319106 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
22319055 GAGGTTTGTG
22319065 TTCAAATCCCTTTCCTTGAA
1 TTCAAATCCCTTTCCTTGAA
22319085 TTCAAATCCCTTTCCTTGAA
1 TTCAAATCCCTTTCCTTGAA
22319105 TT
1 TT
22319107 TTTTGTAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.29, G:0.05, T:0.43
Consensus pattern (20 bp):
TTCAAATCCCTTTCCTTGAA
Found at i:22336811 original size:40 final size:40
Alignment explanation
Indices: 22336715--22336899 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
22336705 TTGAATGCTG
* * *
22336715 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
** *
22336754 TCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
22336794 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
22336834 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
22336875 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
22336900 AACGAGGAGC
Statistics
Matches: 130, Mismatches: 10, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
39 18 0.14
40 102 0.78
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:22336917 original size:80 final size:79
Alignment explanation
Indices: 22336715--22336932 Score: 207
Period size: 80 Copynumber: 2.7 Consensus size: 79
22336705 TTGAATGCTG
* * *
22336715 TCCGGGCTAAGTCCCGAAGGC-TTGTG--CTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGT
1 TCCGGGCTAAGTCCCGAAGGCATT-TGAAC-GAGTGACTAA-ATCCGG-TTAA-ATCCCGAAGGC
*
22336775 ATTTGTGCGAGTTACTAAA
61 ATTTGTGCGAATTACTAAA
* ** * *
22336794 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
22336859 GTGCGAATTACTATAA
65 GTGCGAATTACTA-AA
* * *
22336875 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
22336933 TACGTGATTT
Statistics
Matches: 116, Mismatches: 15, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
79 38 0.33
80 71 0.61
81 7 0.06
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAATTACTAAA
Found at i:22343351 original size:40 final size:40
Alignment explanation
Indices: 22343295--22343726 Score: 729
Period size: 40 Copynumber: 10.8 Consensus size: 40
22343285 AACATTGGAT
22343295 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
22343335 CATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
22343375 TATATCCGGGTTATGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
22343415 CATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* * *
22343455 TATATCCGGGCTATGACCCGAAGGCAATTATGCGGGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
22343495 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
22343535 CATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
22343575 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* * *
22343615 TATATCCGGGCTATGACCCGAAGGCAATTATGCGGGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
22343655 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTCA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* * *
22343695 TATGTCCGGGTTAAGACCCGAAGGCAAATATG
1 TATATCCGGGCTAAGACCCGAAGGCAATTATG
22343727 TTTGTGGCTG
Statistics
Matches: 366, Mismatches: 26, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 366 1.00
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Done.