Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 73 of 222
Found at i:22351995 original size:40 final size:40
Alignment explanation
Indices: 22351939--22352370 Score: 729
Period size: 40 Copynumber: 10.8 Consensus size: 40
22351929 AACATTGGAT
22351939 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
22351979 CATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
22352019 TATATCCGGGTTATGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
22352059 CATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* * *
22352099 TATATCCGGGCTATGACCCGAAGGCAATTATGCGGGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
22352139 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
22352179 CATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
22352219 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* * *
22352259 TATATCCGGGCTATGACCCGAAGGCAATTATGCGGGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
22352299 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTCA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* * *
22352339 TATGTCCGGGTTAAGACCCGAAGGCAAATATG
1 TATATCCGGGCTAAGACCCGAAGGCAATTATG
22352371 TTTGCGGCTG
Statistics
Matches: 366, Mismatches: 26, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 366 1.00
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:22357379 original size:40 final size:40
Alignment explanation
Indices: 22357102--22357365 Score: 342
Period size: 40 Copynumber: 6.7 Consensus size: 40
22357092 TTGAATGCTG
* * *
22357102 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
** * * *
22357141 TCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
22357181 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
22357220 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
22357260 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
22357300 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
22357341 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
22357366 AACGAGGAGC
Statistics
Matches: 204, Mismatches: 14, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
39 51 0.25
40 143 0.70
41 10 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:22357383 original size:120 final size:118
Alignment explanation
Indices: 22357102--22357398 Score: 329
Period size: 120 Copynumber: 2.5 Consensus size: 118
22357092 TTGAATGCTG
* * *
22357102 TCCGGGCTAAGTCCCGAAGGC-TTGTG--CTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGT
1 TCCGGGCTAAGTCCCGAAGGCATT-TGAAC-GAGTGACTAA-ATCCGG-TTAA-ATCCCGAAGGC
* *
22357162 ATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
61 ATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
* ** * *
22357220 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
* *
22357285 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
65 GTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTA-AA
* * *
22357341 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
22357399 TACGTGATTT
Statistics
Matches: 152, Mismatches: 18, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
118 23 0.15
119 63 0.41
120 64 0.42
121 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (118 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
Found at i:22358890 original size:20 final size:19
Alignment explanation
Indices: 22358865--22358905 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
22358855 CCAATATAGT
*
22358865 GGTCAATGCTCTTAGTTGAA
1 GGTCAATGCTC-GAGTTGAA
*
22358885 GGTCAATGTTCGAGTTGAA
1 GGTCAATGCTCGAGTTGAA
22358904 GG
1 GG
22358906 CGATTTTTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.24, C:0.12, G:0.32, T:0.32
Consensus pattern (19 bp):
GGTCAATGCTCGAGTTGAA
Found at i:22369506 original size:14 final size:14
Alignment explanation
Indices: 22369488--22369517 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
22369478 AATATTCTTC
22369488 TAAAAATAGTT-AT
1 TAAAAATAGTTAAT
22369501 TAAAAATAGTTAAT
1 TAAAAATAGTTAAT
22369515 TAA
1 TAA
22369518 TTTTAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.37
Consensus pattern (14 bp):
TAAAAATAGTTAAT
Found at i:22369626 original size:18 final size:18
Alignment explanation
Indices: 22369592--22369626 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
22369582 TTAGAGTTTA
* *
22369592 TATCTAAATTTATTTAAT
1 TATCTAAATTAAATTAAT
22369610 TATCTAAATTAAATTAA
1 TATCTAAATTAAATTAA
22369627 ACTACGATGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.49
Consensus pattern (18 bp):
TATCTAAATTAAATTAAT
Found at i:22372466 original size:22 final size:21
Alignment explanation
Indices: 22372441--22372483 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
22372431 GAGACTAATT
22372441 TAAAACAATTCAAAAA-TTTTGA
1 TAAAA-AATT-AAAAACTTTTGA
*
22372463 TAAAAAGTTAAAAACTTTTGA
1 TAAAAAATTAAAAACTTTTGA
22372484 AAACATGGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 5 0.26
21 9 0.47
22 5 0.26
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.33
Consensus pattern (21 bp):
TAAAAAATTAAAAACTTTTGA
Found at i:22377201 original size:91 final size:92
Alignment explanation
Indices: 22377086--22377314 Score: 302
Period size: 92 Copynumber: 2.5 Consensus size: 92
22377076 TAATATTAGT
* *
22377086 TGTGATATTAAATTAGCGAGCTATTTGGAGTAACGATAGTAAATCAGCTAACTCA-AAGATT-TT
1 TGTGATCTTAAATTAGCGAGCTATTTGGAGTAACGATAGAAAATCAGCTAACTCAGAAGATTATT
22377149 TCATGATAGTAAATCAATGAACTTAGGC
66 T-ATGATAGTAAATCAATGAACTTAGGC
* * * * *
22377177 TGTGATCTTAAATCAGCGAGCTATTCGGAGTAACGGA-AGAAAATCAGTTGACTTAGAAGATTAT
1 TGTGATCTTAAATTAGCGAGCTATTTGGAGTAAC-GATAGAAAATCAGCTAACTCAGAAGATTAT
*
22377241 TTATGATAGTAAATCAATGAACTTAGGT
65 TTATGATAGTAAATCAATGAACTTAGGC
* * * * *
22377269 TGTGATCTTAAATTAGTGAACTGTTTGGAGTAGCGATACAAAATCA
1 TGTGATCTTAAATTAGCGAGCTATTTGGAGTAACGATAGAAAATCA
22377315 ATTGTTAGAT
Statistics
Matches: 119, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
91 47 0.39
92 69 0.58
93 3 0.03
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.31
Consensus pattern (92 bp):
TGTGATCTTAAATTAGCGAGCTATTTGGAGTAACGATAGAAAATCAGCTAACTCAGAAGATTATT
TATGATAGTAAATCAATGAACTTAGGC
Found at i:22384876 original size:13 final size:15
Alignment explanation
Indices: 22384858--22384889 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
22384848 GAAAGGGAAG
22384858 GAGAAGAA-AAGAA-
1 GAGAAGAAGAAGAAT
22384871 GAGAAGAAGAAGAAT
1 GAGAAGAAGAAGAAT
22384886 GAGA
1 GAGA
22384890 GGGTGGGAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 5 0.29
15 4 0.24
ACGTcount: A:0.62, C:0.00, G:0.34, T:0.03
Consensus pattern (15 bp):
GAGAAGAAGAAGAAT
Found at i:22384904 original size:5 final size:5
Alignment explanation
Indices: 22384894--22384923 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
22384884 ATGAGAGGGT
22384894 GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA
1 GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA
22384924 AAAGAAAGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.40, C:0.00, G:0.60, T:0.00
Consensus pattern (5 bp):
GGGAA
Found at i:22385307 original size:16 final size:17
Alignment explanation
Indices: 22385286--22385320 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
22385276 GTTATTTTGA
22385286 TTATTTTAATATT-TTT
1 TTATTTTAATATTGTTT
22385302 TTATTTTAATATTGTTT
1 TTATTTTAATATTGTTT
22385319 TT
1 TT
22385321 TATAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (17 bp):
TTATTTTAATATTGTTT
Found at i:22388069 original size:64 final size:62
Alignment explanation
Indices: 22388000--22388169 Score: 159
Period size: 62 Copynumber: 2.7 Consensus size: 62
22387990 ATTAATTGCA
* *
22388000 ACATTAGAACATTAAAACACT-AAAACAACA-T-TAATATAAATTTTATTTGTAATATAAATTAA
1 ACATTACAACATTAAAA-ACTGAAAACAACATTGTAATATAAA---T-TGTGTAATATAAATTAA
22388062 AT
61 AT
* * * * * *
22388064 ACATTACATCACTAAAAATTGGAACCAACATTGTAATATAAATTGTGTTATATAAATTAAAT
1 ACATTACAACATTAAAAACTGAAAACAACATTGTAATATAAATTGTGTAATATAAATTAAAT
* * *
22388126 ACATTACAACATTAAAAATTG-GAACAAACTTTGTAATATAAATT
1 ACATTACAACATTAAAAACTGAAAAC-AACATTGTAATATAAATT
22388170 AGGTACATTG
Statistics
Matches: 89, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
61 2 0.02
62 53 0.60
63 3 0.03
64 21 0.24
65 1 0.01
66 9 0.10
ACGTcount: A:0.50, C:0.11, G:0.06, T:0.34
Consensus pattern (62 bp):
ACATTACAACATTAAAAACTGAAAACAACATTGTAATATAAATTGTGTAATATAAATTAAAT
Found at i:22388130 original size:62 final size:62
Alignment explanation
Indices: 22388051--22388169 Score: 202
Period size: 62 Copynumber: 1.9 Consensus size: 62
22388041 TTTATTTGTA
* *
22388051 ATATAAATTAAATACATTACATCACTAAAAATTGGAACCAACATTGTAATATAAATTGTGTT
1 ATATAAATTAAATACATTACAACACTAAAAATTGGAACAAACATTGTAATATAAATTGTGTT
* *
22388113 ATATAAATTAAATACATTACAACATTAAAAATTGGAACAAACTTTGTAATATAAATT
1 ATATAAATTAAATACATTACAACACTAAAAATTGGAACAAACATTGTAATATAAATT
22388170 AGGTACATTG
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 53 1.00
ACGTcount: A:0.50, C:0.10, G:0.07, T:0.34
Consensus pattern (62 bp):
ATATAAATTAAATACATTACAACACTAAAAATTGGAACAAACATTGTAATATAAATTGTGTT
Found at i:22391432 original size:27 final size:27
Alignment explanation
Indices: 22391401--22391475 Score: 78
Period size: 27 Copynumber: 2.8 Consensus size: 27
22391391 CTAGGTGTGT
22391401 CGCCTATCAAATAGGCACCACTAGTGC
1 CGCCTATCAAATAGGCACCACTAGTGC
* *** *
22391428 CGCCTATCAGATAGGGGTCACTGGTGC
1 CGCCTATCAAATAGGCACCACTAGTGC
* * *
22391455 CACCTATCAAGTAGACACCAC
1 CGCCTATCAAATAGGCACCAC
22391476 ACCCCCTTCG
Statistics
Matches: 36, Mismatches: 12, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.28, C:0.32, G:0.21, T:0.19
Consensus pattern (27 bp):
CGCCTATCAAATAGGCACCACTAGTGC
Found at i:22392646 original size:17 final size:17
Alignment explanation
Indices: 22392619--22392653 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
22392609 ATAAAATAAG
22392619 ATTTTTATTATT-TTTA
1 ATTTTTATTATTATTTA
22392635 ATTTTATATTATTATTTA
1 ATTTT-TATTATTATTTA
22392653 A
1 A
22392654 AGACTTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 7 0.41
18 5 0.29
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTATTATTATTTA
Found at i:22392809 original size:22 final size:20
Alignment explanation
Indices: 22392773--22392818 Score: 74
Period size: 22 Copynumber: 2.2 Consensus size: 20
22392763 ACAAATATGA
22392773 ATATAAATAAATAAATATTT
1 ATATAAATAAATAAATATTT
22392793 ATATAAAATAAAATAAATATTT
1 ATAT-AAAT-AAATAAATATTT
22392815 ATAT
1 ATAT
22392819 TTAGAATATC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 4 0.17
21 4 0.17
22 16 0.67
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
ATATAAATAAATAAATATTT
Found at i:22393274 original size:20 final size:20
Alignment explanation
Indices: 22393246--22393284 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
22393236 AGTCATTAAA
*
22393246 TCAATTTGATTAAAATCAAC
1 TCAAATTGATTAAAATCAAC
*
22393266 TCAAATTGATTAGAATCAA
1 TCAAATTGATTAAAATCAA
22393285 ATAAAATCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.13, G:0.08, T:0.33
Consensus pattern (20 bp):
TCAAATTGATTAAAATCAAC
Found at i:22393291 original size:20 final size:20
Alignment explanation
Indices: 22393251--22393291 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
22393241 TTAAATCAAT
* *
22393251 TTGATTAAAATCAACTCAAA
1 TTGATTAAAATCAAATAAAA
*
22393271 TTGATTAGAATCAAATAAAA
1 TTGATTAAAATCAAATAAAA
22393291 T
1 T
22393292 CAAGATAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.51, C:0.10, G:0.07, T:0.32
Consensus pattern (20 bp):
TTGATTAAAATCAAATAAAA
Found at i:22394134 original size:377 final size:376
Alignment explanation
Indices: 22393283--22395045 Score: 2196
Period size: 377 Copynumber: 4.7 Consensus size: 376
22393273 GATTAGAATC
* * * * *
22393283 AAATAAAATCAAGATAAAAT-TCCTTTTATAAATAGATTCTT-TATGTTTGCTGAGAAAAATTAA
1 AAATCAAATCAAGAT-AAATGTCCTTTTAAAAACAGATT-TTGTATGTTTGTTGAGAAAAAATAA
* * * * ** *
22393346 CTTTCGTGCTGGGCTAAAATATCTGCAGGCCCATTTTGCGCCCGACTAGTCTAGACATTTCGCAT
64 CTTTCGTGTTGGGCTAAAATATCCGCAGGCCCATTTTGGGCCCGACTGGTCCGGACATTTCGCGT
*
22393411 CGCCCACGTTGTGCTGGTGCACCCCAACCCCGATGGGTTTGGATCTGCAACCCCCTACGCGCAAG
129 CGCCCACGTTGTGC-GGTGCGCCCCAACCCCGATGGGTTTGGATCTGCAACCCCCTACGCGCAAG
* * *
22393476 GCAATGTTTCGAGCTTAGTCATTCAATCACTCTTCAAGTGGATTCTCATATATATTTGTGTTTTT
193 GCAAGGTTTCAAGCTTAGTCATTCAATCACCCTTCAAGTGGATTCTCATATATATTTGTGTTTTT
*
22393541 TTTTAATTCTGAAGAATTCTTTAGGCTTTTATAGGCATTCAATATGAAGATATTTTGGAAATTTC
258 TTTTAATTCTGAAGAATTCTTTAGGCTTTTATAGGCATTCAATATGAAGGTATTTTGGAAATTTC
* *
22393606 CATGAATAAAGATACAAAATCTGCAATAAATAAGTCATTAAATCAATTTGATTA
323 CATGAATAAAGATACAAAATCTGCATTAAATGAGTCATTAAATCAATTTGATTA
*
22393660 CAATCAAATCAAGATAAATGT-CTATTTAAAAACAGATTCTT-TATGTTTGTTGAGAAAAAATAA
1 AAATCAAATCAAGATAAATGTCCT-TTTAAAAACAGATT-TTGTATGTTTGTTGAGAAAAAATAA
* * * * ** * * *
22393723 CTTTCGTGCTGGGCTAAAATATTCGCATGCCCATTTTGTGCTTGACCGGTCCAGACGTTTCGCGT
64 CTTTCGTGTTGGGCTAAAATATCCGCAGGCCCATTTTGGGCCCGACTGGTCCGGACATTTCGCGT
* *
22393788 CGCCCACGTTGTGCTGGTGCACCCCAACCCCGATGGGTTTGGATCTGCAACCCCCTACGTGCAAG
129 CGCCCACGTTGTGC-GGTGCGCCCCAACCCCGATGGGTTTGGATCTGCAACCCCCTACGCGCAAG
*
22393853 GCAAGGTTTCAAGCTTAGTCATTCAATCACTCTTCAAGTGGATTCTCATATATATTTGTGTTTTT
193 GCAAGGTTTCAAGCTTAGTCATTCAATCACCCTTCAAGTGGATTCTCATATATATTTGTG-TTTT
22393918 TTTTTAATTCTGAAGAATTCTTTAGGCTTTTATAGGCATTCAATATGAAGGTATTTTGGAAATTT
257 TTTTTAATTCTGAAGAATTCTTTAGGCTTTTATAGGCATTCAATATGAAGGTATTTTGGAAATTT
* * * *
22393983 CCATGAATAAAGATAGAAAATCTGCATTAAAGGAGCCATTGAATCAATTTGATTA
322 CCATGAATAAAGATACAAAATCTGCATTAAATGAGTCATTAAATCAATTTGATTA
*
22394038 AAATCAAATCAAGATAAATGTCCTTTTAAAAACAGATTTTGTATGTTTGCTGAGAAAAAATAACT
1 AAATCAAATCAAGATAAATGTCCTTTTAAAAACAGATTTTGTATGTTTGTTGAGAAAAAATAACT
* * * ** * * * *
22394103 TTCGTGTTGGGCT-AACTACCCGTAGGCCCATTTTGGGCTAGATTGGTCTGGACATTTCGAGTTG
66 TTCGTGTTGGGCTAAAATATCCGCAGGCCCATTTTGGGCCCGACTGGTCCGGACATTTCGCGTCG
* * * *
22394167 CCTATGTCGTGCGAGTGCGCCCCAACCCCGATGGGTTTGGATCTGCAACCCCCTACGCTCAAGGC
131 CCCACGTTGTGCG-GTGCGCCCCAACCCCGATGGGTTTGGATCTGCAACCCCCTACGCGCAAGGC
* * * * * *
22394232 AGGGTTTCAAGCTTAGTCATTCAATCACCTTTCAAGTGGGTTCTTATATATATTGGGGTTCTTTC
195 AAGGTTTCAAGCTTAGTCATTCAATCACCCTTCAAGTGGATTCTCATATATATTTGTGTT-TTT-
** * * * *
22394297 TTAAAATTCTGAAGGACTCTTTAGGCTTTTATAGGTATTCAATATGGAGGTATTTTGGAAATTTC
258 TTTTAATTCTGAAGAATTCTTTAGGCTTTTATAGGCATTCAATATGAAGGTATTTTGGAAATTTC
* * *
22394362 TATGAATAAAGATACAAAATTTGCATTAAATGAGTCATTAAATCAATTTCATTA
323 CATGAATAAAGATACAAAATCTGCATTAAATGAGTCATTAAATCAATTTGATTA
* *
22394416 AAATCAAATCAAGATAAATGTCCTTTTAAAAATAGATTATGTATGTTTGTTGAGAAAAAAATAAC
1 AAATCAAATCAAGATAAATGTCCTTTTAAAAACAGATTTTGTATGTTTGTTGAG-AAAAAATAAC
* * * * ** * * * *
22394481 TTTCGTGTTGGGATAAAATATCCGTAGGCCTATTTTTGGCCTAACCGTTCCGGACATTTCCCATC
65 TTTCGTGTTGGGCTAAAATATCCGCAGGCCCATTTTGGGCCCGACTGGTCCGGACATTTCGCGTC
* * ** * * * * *
22394546 ACCTATATCGTTCGAGTGCGCCCCAACCCTGATAGGTTTGGATTTGC-ACCCCCTGA-GCGCGAA
130 GCCCACGTTGTGCG-GTGCGCCCCAACCCCGATGGGTTTGGATCTGCAACCCCCT-ACGCGC-AA
* * *
22394609 -GCAAGGTTTCAAGCTTAGTCATTCAATCACCCTTCAAGTGGGTTCTCGTATATATTAGTGTTTT
192 GGCAAGGTTTCAAGCTTAGTCATTCAATCACCCTTCAAGTGGATTCTCATATATATTTGTGTTTT
* * * *
22394673 TTTTT-ATTCTGAGGAATTCTTTAGGCTTTTATAGACATTGAATATGGAGGTATTTTGGAAATTT
257 TTTTTAATTCTGAAGAATTCTTTAGGCTTTTATAGGCATTCAATATGAAGGTATTTTGGAAATTT
* * * * *
22394737 TCATGAATAAATATACAAAATATGAATTAAATGAGTCATTAAATCAAATTGATTTGAA
322 CCATGAATAAAGATACAAAATCTGCATTAAATGAGTCATTAAATCAATTTGA-TT--A
* *
22394795 TTAAATAAAATCAAGATAAATGTCCTTTTAAAAACAGATTATGTATGTTTGTTGAGAAAAAAATA
1 --AAATCAAATCAAGATAAATGTCCTTTTAAAAACAGATTTTGTATGTTTGTTGAG-AAAAAATA
* * * * * * *
22394860 ACTTTCGTGTTGGGCTAAAATATTCGCAAGCCCAATTTGGGCCCGATTAGTTCGGACATTTTGCG
63 ACTTTCGTGTTGGGCTAAAATATCCGCAGGCCCATTTTGGGCCCGACTGGTCCGGACATTTCGCG
* * * * * **
22394925 TCGCCCACATTGTGCGGGTGCGCTCCAACCCCGATGGGTTTGGATTTGTAACCCCCAACGCGTGA
128 TCGCCCACGTTGTGC-GGTGCGCCCCAACCCCGATGGGTTTGGATCTGCAACCCCCTACGCGCAA
* ** *
22394990 GGTAAAATTTCAAGCTTAGTTATTCAATCACCCTTCAAGTTGG-TTCTCATATATAT
192 GGCAAGGTTTCAAGCTTAGTCATTCAATCACCCTTCAAG-TGGATTCTCATATATAT
22395046 AAACATCTCA
Statistics
Matches: 1211, Mismatches: 153, Indels: 39
0.86 0.11 0.03
Matches are distributed among these distances:
376 107 0.09
377 379 0.31
378 346 0.29
379 92 0.08
380 79 0.07
381 149 0.12
382 56 0.05
383 3 0.00
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (376 bp):
AAATCAAATCAAGATAAATGTCCTTTTAAAAACAGATTTTGTATGTTTGTTGAGAAAAAATAACT
TTCGTGTTGGGCTAAAATATCCGCAGGCCCATTTTGGGCCCGACTGGTCCGGACATTTCGCGTCG
CCCACGTTGTGCGGTGCGCCCCAACCCCGATGGGTTTGGATCTGCAACCCCCTACGCGCAAGGCA
AGGTTTCAAGCTTAGTCATTCAATCACCCTTCAAGTGGATTCTCATATATATTTGTGTTTTTTTT
TAATTCTGAAGAATTCTTTAGGCTTTTATAGGCATTCAATATGAAGGTATTTTGGAAATTTCCAT
GAATAAAGATACAAAATCTGCATTAAATGAGTCATTAAATCAATTTGATTA
Found at i:22396137 original size:4 final size:4
Alignment explanation
Indices: 22396130--22396159 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
22396120 TATTTTAGAT
*
22396130 AGAA AGAA AGAG AGAA AGAA AGAA AGAA AG
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AG
22396160 TGAGAATCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:22397883 original size:34 final size:34
Alignment explanation
Indices: 22397822--22398012 Score: 168
Period size: 34 Copynumber: 5.6 Consensus size: 34
22397812 GCAATATGGA
* * * * *
22397822 ATGCTTATGATAGATTAATACGATAGCATTTAAT
1 ATGCTTATAACAGATCAATACGGTAGCAATTAAT
* * * *
22397856 ATGCTTATAATAGTTCAATATGGTAGCAAATAAT
1 ATGCTTATAACAGATCAATACGGTAGCAATTAAT
* * * *
22397890 ATACTTATAACGGATCAATACGTTAGTAATTAAT
1 ATGCTTATAACAGATCAATACGGTAGCAATTAAT
* ** * *
22397924 ATGCTTATAACAGATCAATAAGGTAAAAACTAAC
1 ATGCTTATAACAGATCAATACGGTAGCAATTAAT
* *
22397958 ATGCTTATAACAGATCAATGCGGT-GCCAAATAAT
1 ATGCTTATAACAGATCAATACGGTAG-CAATTAAT
* *
22397992 ATGTTTATAACAAATCAATAC
1 ATGCTTATAACAGATCAATAC
22398013 AATAGAAAAA
Statistics
Matches: 124, Mismatches: 32, Indels: 2
0.78 0.20 0.01
Matches are distributed among these distances:
34 124 1.00
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.32
Consensus pattern (34 bp):
ATGCTTATAACAGATCAATACGGTAGCAATTAAT
Found at i:22406732 original size:33 final size:33
Alignment explanation
Indices: 22406690--22406759 Score: 140
Period size: 33 Copynumber: 2.1 Consensus size: 33
22406680 CAATTATGTG
22406690 TGATTAATTCTTGGTTTTATATTTCTAGACTAT
1 TGATTAATTCTTGGTTTTATATTTCTAGACTAT
22406723 TGATTAATTCTTGGTTTTATATTTCTAGACTAT
1 TGATTAATTCTTGGTTTTATATTTCTAGACTAT
22406756 TGAT
1 TGAT
22406760 CCATGTTTGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.24, C:0.09, G:0.13, T:0.54
Consensus pattern (33 bp):
TGATTAATTCTTGGTTTTATATTTCTAGACTAT
Found at i:22409511 original size:67 final size:67
Alignment explanation
Indices: 22409356--22409542 Score: 198
Period size: 67 Copynumber: 2.8 Consensus size: 67
22409346 TGCTTACGAC
* * * * * * *
22409356 AGATCAATACGATAACATTTAATATGCTTATAACAATTCGACATAGTAGCAAATAATATGATCAT
1 AGATCAATACGGTAACAATTAATATACTTATAACAAATCAATATAGTAGC-AATAACATGATCAT
22409421 AAT
65 AAT
* *** *
22409424 GGATCAATACGGTGGTAATTAATATACTTATAACAGAAT-AATA-AGTTAGCAATAACATGATTA
1 AGATCAATACGGTAACAATTAATATACTTATAACA-AATCAATATAG-TAGCAATAACATGATCA
22409487 TAAT
64 TAAT
* **
22409491 AGATCAATGCGGTAACAATTAATATGTTTATAACAAATCAATATAGTAGCAA
1 AGATCAATACGGTAACAATTAATATACTTATAACAAATCAATATAGTAGCAA
22409543 AAGACATGCT
Statistics
Matches: 96, Mismatches: 19, Indels: 9
0.77 0.15 0.07
Matches are distributed among these distances:
66 3 0.03
67 55 0.57
68 36 0.38
69 2 0.02
ACGTcount: A:0.45, C:0.11, G:0.13, T:0.30
Consensus pattern (67 bp):
AGATCAATACGGTAACAATTAATATACTTATAACAAATCAATATAGTAGCAATAACATGATCATA
AT
Found at i:22411843 original size:7 final size:7
Alignment explanation
Indices: 22411831--22411856 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
22411821 TCAAATATAT
22411831 TAAAATG
1 TAAAATG
22411838 TAAAATG
1 TAAAATG
22411845 TAAAATG
1 TAAAATG
22411852 TAAAA
1 TAAAA
22411857 AATATTCACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.12, T:0.27
Consensus pattern (7 bp):
TAAAATG
Found at i:22413251 original size:22 final size:22
Alignment explanation
Indices: 22413221--22413274 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
22413211 GTTTAGCAGT
* *
22413221 TTTG-TGCTCTCTGTTCAGCAC
1 TTTGCTGCTCTCTATGCAGCAC
22413242 TTCTGC-GCTCTCTATGCAGCAC
1 TT-TGCTGCTCTCTATGCAGCAC
22413264 TTTGCTGCTCT
1 TTTGCTGCTCT
22413275 TTGCTTAGCA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
21 5 0.18
22 23 0.82
ACGTcount: A:0.09, C:0.31, G:0.19, T:0.41
Consensus pattern (22 bp):
TTTGCTGCTCTCTATGCAGCAC
Found at i:22427382 original size:20 final size:20
Alignment explanation
Indices: 22427359--22427396 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
22427349 GCCTAGGTCG
*
22427359 CATTCTATTAGCCTTTGTGA
1 CATTATATTAGCCTTTGTGA
*
22427379 CATTATGTTAGCCTTTGT
1 CATTATATTAGCCTTTGT
22427397 AGTGTACTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.47
Consensus pattern (20 bp):
CATTATATTAGCCTTTGTGA
Found at i:22433746 original size:26 final size:26
Alignment explanation
Indices: 22433673--22433732 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
22433663 ATATTTTCTA
* *
22433673 AAAATTTTACC-GAAGGCAAAATCATC
1 AAAATTTTACCAG-GGGTAAAATCATC
22433699 AAAATTTTACCAGGGGTAAAATCATC
1 AAAATTTTACCAGGGGTAAAATCATC
22433725 AAAATTTT
1 AAAATTTT
22433733 GATGAGGGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 30 0.97
27 1 0.03
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.28
Consensus pattern (26 bp):
AAAATTTTACCAGGGGTAAAATCATC
Found at i:22437081 original size:27 final size:27
Alignment explanation
Indices: 22437051--22437127 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 27
22437041 AATGCACCAG
*
22437051 AGTGCCAATATCAATGATTTGCATTGA
1 AGTGCCAATATCAATGATTTGCATCGA
*
22437078 AGTGCCAATATCATTG-TGTTGCATCGA
1 AGTGCCAATATCAATGAT-TTGCATCGA
* * *
22437105 AGGGCCAATATCACTAATTTGCA
1 AGTGCCAATATCAATGATTTGCA
22437128 GCAAATCCCC
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
26 1 0.02
27 41 0.95
28 1 0.02
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.31
Consensus pattern (27 bp):
AGTGCCAATATCAATGATTTGCATCGA
Found at i:22438489 original size:11 final size:11
Alignment explanation
Indices: 22438473--22438515 Score: 59
Period size: 11 Copynumber: 3.7 Consensus size: 11
22438463 CCTAAAATAC
22438473 ATAAAATATTA
1 ATAAAATATTA
22438484 ATAAAATATCTTA
1 ATAAAATA--TTA
22438497 ATAAAATATTA
1 ATAAAATATTA
*
22438508 TTAAAATA
1 ATAAAATA
22438516 ATTTCACCTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
11 18 0.62
13 11 0.38
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (11 bp):
ATAAAATATTA
Found at i:22442826 original size:13 final size:13
Alignment explanation
Indices: 22442808--22442833 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
22442798 TATCATGTGG
22442808 CATGTTTTATATA
1 CATGTTTTATATA
22442821 CATGTTTTATATA
1 CATGTTTTATATA
22442834 TCAATTCCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.54
Consensus pattern (13 bp):
CATGTTTTATATA
Found at i:22443526 original size:22 final size:22
Alignment explanation
Indices: 22443471--22443528 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
22443461 AGTGTTTAAA
**
22443471 CAATAGGCACCAAAATGCTGAG
1 CAATAGGCACCGTAATGCTGAG
*
22443493 CAATAGGCACCGTAATG-TGAAT
1 CAATAGGCACCGTAATGCTG-AG
22443515 CAATAGGCACCGTA
1 CAATAGGCACCGTA
22443529 GTGCAAATCC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
21 2 0.06
22 30 0.94
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.17
Consensus pattern (22 bp):
CAATAGGCACCGTAATGCTGAG
Found at i:22443537 original size:22 final size:22
Alignment explanation
Indices: 22443493--22443537 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
22443483 AAATGCTGAG
**
22443493 CAATAGGCACCGTAATGTGAAT
1 CAATAGGCACCGTAATGCAAAT
*
22443515 CAATAGGCACCGTAGTGCAAAT
1 CAATAGGCACCGTAATGCAAAT
22443537 C
1 C
22443538 CTGTAAAAGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (22 bp):
CAATAGGCACCGTAATGCAAAT
Found at i:22444551 original size:19 final size:21
Alignment explanation
Indices: 22444527--22444566 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
22444517 ATTTCAAAGT
22444527 TTTAATGT-T-GGTATCGATA
1 TTTAATGTCTAGGTATCGATA
*
22444546 TTTAATTTCTAGGTATCGATA
1 TTTAATGTCTAGGTATCGATA
22444567 CTATATCGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 1 0.06
21 10 0.56
ACGTcount: A:0.28, C:0.07, G:0.17, T:0.47
Consensus pattern (21 bp):
TTTAATGTCTAGGTATCGATA
Found at i:22461716 original size:20 final size:20
Alignment explanation
Indices: 22461691--22461728 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
22461681 TAAAGAAATT
22461691 AAATGC-AATGGAAAATAATG
1 AAATGCAAAT-GAAAATAATG
22461711 AAATGCAAATGAAAATAA
1 AAATGCAAATGAAAATAA
22461729 CAAAACTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.61, C:0.05, G:0.16, T:0.18
Consensus pattern (20 bp):
AAATGCAAATGAAAATAATG
Found at i:22466518 original size:51 final size:49
Alignment explanation
Indices: 22466456--22466568 Score: 138
Period size: 51 Copynumber: 2.2 Consensus size: 49
22466446 TTCCAAGTCA
*
22466456 TTTTCATTTTCATTTTGGAGAAAA-CTACACTCATTTCGAAATGTTTTCAT
1 TTTTCATTTTCATTTTGAAGAAAATC-ACACTCATTTCGAAATG-TTTCAT
* * *
22466506 TTTTCTATTTTCATTTTTAAGAAAATCACATTCATTTCTAAATGTTTCAT
1 TTTTC-ATTTTCATTTTGAAGAAAATCACACTCATTTCGAAATGTTTCAT
*
22466556 TTCTCCATTTTCA
1 TT-TTCATTTTCA
22466569 CCATTTCTAT
Statistics
Matches: 55, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
50 20 0.36
51 34 0.62
52 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.06, T:0.50
Consensus pattern (49 bp):
TTTTCATTTTCATTTTGAAGAAAATCACACTCATTTCGAAATGTTTCAT
Found at i:22473611 original size:21 final size:22
Alignment explanation
Indices: 22473575--22473618 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
22473565 CCTAATTTCC
*
22473575 AATTTTATATTTTCAATCTTCA
1 AATTTTATACTTTCAATCTTCA
*
22473597 AATTTTA-ACTTTCAATTTTCA
1 AATTTTATACTTTCAATCTTCA
22473618 A
1 A
22473619 TTTCAAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.34, C:0.14, G:0.00, T:0.52
Consensus pattern (22 bp):
AATTTTATACTTTCAATCTTCA
Found at i:22473615 original size:13 final size:13
Alignment explanation
Indices: 22473568--22473624 Score: 53
Period size: 14 Copynumber: 4.2 Consensus size: 13
22473558 TTCAATCCCT
* *
22473568 AATTTCCAATTTT
1 AATTTTCAATTTC
22473581 ATATTTTCAATCTTC
1 A-ATTTTCAAT-TTC
22473596 AAATTTT-AACTTTC
1 -AATTTTCAA-TTTC
22473610 AATTTTCAATTTC
1 AATTTTCAATTTC
22473623 AA
1 AA
22473625 AATTTCAATC
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
13 13 0.35
14 15 0.41
15 8 0.22
16 1 0.03
ACGTcount: A:0.33, C:0.16, G:0.00, T:0.51
Consensus pattern (13 bp):
AATTTTCAATTTC
Found at i:22473630 original size:14 final size:13
Alignment explanation
Indices: 22473585--22473633 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 13
22473575 AATTTTATAT
22473585 TTTCAATCTTCAAA
1 TTTCAAT-TTCAAA
* *
22473599 TTTTAACTTTCAAT
1 TTTCAA-TTTCAAA
22473613 TTTCAATTTCAAAA
1 TTTCAATTTC-AAA
22473627 TTTCAAT
1 TTTCAAT
22473634 CATCAATTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
13 4 0.14
14 24 0.83
15 1 0.03
ACGTcount: A:0.35, C:0.16, G:0.00, T:0.49
Consensus pattern (13 bp):
TTTCAATTTCAAA
Found at i:22473639 original size:28 final size:28
Alignment explanation
Indices: 22473583--22473641 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
22473573 CCAATTTTAT
* *
22473583 ATTTTCAATCTTCAAATTTTAACTTTCA
1 ATTTTCAATCTTCAAATTTCAACTATCA
22473611 ATTTTCAAT-TTCAAAATTTCAA-TCATCA
1 ATTTTCAATCTTC-AAATTTCAACT-ATCA
22473639 ATT
1 ATT
22473642 ATTTTTTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 4 0.15
28 23 0.85
ACGTcount: A:0.36, C:0.17, G:0.00, T:0.47
Consensus pattern (28 bp):
ATTTTCAATCTTCAAATTTCAACTATCA
Found at i:22473662 original size:14 final size:13
Alignment explanation
Indices: 22473638--22473673 Score: 63
Period size: 13 Copynumber: 2.7 Consensus size: 13
22473628 TTCAATCATC
22473638 AATTATTTTTTTA
1 AATTATTTTTTTA
22473651 AATTATTTTTTTA
1 AATTATTTTTTTA
22473664 AATTTATTTT
1 AA-TTATTTT
22473674 CTTCGATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
AATTATTTTTTTA
Found at i:22475424 original size:63 final size:62
Alignment explanation
Indices: 22475328--22475497 Score: 191
Period size: 63 Copynumber: 2.7 Consensus size: 62
22475318 TTTTTTTTGT
* * * ** *
22475328 CACAATCATCACAACAGCACAC-TCATTCCCTGCATTATCACCTTCAA-TTTCGGTTTATTTTA
1 CACAACCACCACAACA-CACACATCATTCCCTGCATTAACACCTTCAACACT-AGTTTATTTTA
*
22475390 CACAACCACCACAACACACACAATCATTCCCTGCATTAACACATTCAACACTAGTTTATTTTA
1 CACAACCACCACAACACACAC-ATCATTCCCTGCATTAACACCTTCAACACTAGTTTATTTTA
* * * *
22475453 CACAAGCACCACAACACGCCCCATCATTCCCTGTATTAACACCTT
1 CACAACCACCACAACAC-ACACATCATTCCCTGCATTAACACCTT
22475498 TTCTATGGAT
Statistics
Matches: 92, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
61 5 0.05
62 14 0.15
63 70 0.76
64 3 0.03
ACGTcount: A:0.33, C:0.35, G:0.05, T:0.27
Consensus pattern (62 bp):
CACAACCACCACAACACACACATCATTCCCTGCATTAACACCTTCAACACTAGTTTATTTTA
Found at i:22480474 original size:41 final size:41
Alignment explanation
Indices: 22480417--22480557 Score: 140
Period size: 41 Copynumber: 3.4 Consensus size: 41
22480407 ATTATACTTA
* * *
22480417 AATTGCACATACGTGCCCTTGTTTGTTCTTCGATACCCATG
1 AATTGAACATACGTGCCCCTGTTTGTACTTCGATACCCATG
* * *
22480458 AATTGAACATATGTGCCCCTGTTTGTACTTCGATACCCTTA
1 AATTGAACATACGTGCCCCTGTTTGTACTTCGATACCCATG
** * * * * * *
22480499 AATTTCATATACGTTCCCCAGTTTATACTTCGGTACCCTTG
1 AATTGAACATACGTGCCCCTGTTTGTACTTCGATACCCATG
22480540 AATT-ACACATACGTGCCC
1 AATTGA-ACATACGTGCCC
22480558 TAATTCAGTT
Statistics
Matches: 81, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
41 81 1.00
ACGTcount: A:0.23, C:0.27, G:0.14, T:0.35
Consensus pattern (41 bp):
AATTGAACATACGTGCCCCTGTTTGTACTTCGATACCCATG
Found at i:22483068 original size:41 final size:41
Alignment explanation
Indices: 22483011--22483386 Score: 430
Period size: 41 Copynumber: 9.2 Consensus size: 41
22483001 TAATTATACT
* *
22483011 TGAATTACACATACGTGCCCCTATTTGTACTTCGGTACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* *
22483052 TGAATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCA
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * * *
22483093 TAAATTGCAGATACGTGCCCTTGTTTGTACTTCGATGCCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* *
22483134 TGAATTGCATATTCGTGCCCCTGTTTGTACTTCGGTACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * *
22483175 TAAATTGCACATACGTGCCCTTGTTTGTACTTTGATACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * *
22483216 TGAATTGCATATTCGTGCCCCTGTTTGTACTTTGGTACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * * *
22483257 TAAATTTCACATACGTGCCCCTATTTATACTTCGGTACCTC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* ** *
22483298 TGAATTGCACATACGTGCCCCTATTTGTACTAGGGTA-CTC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * * * * *
22483338 TGTATAGCACTTACGTGCCCCTGTTTATACATTTGGTAACCT
1 TGAATTGCACATACGTGCCCCTGTTTGTAC-TTCGGTACCCC
22483380 TGAATTG
1 TGAATTG
22483387 AATAATATAT
Statistics
Matches: 283, Mismatches: 50, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
40 28 0.10
41 249 0.88
42 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.17, T:0.35
Consensus pattern (41 bp):
TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
Found at i:22483152 original size:21 final size:21
Alignment explanation
Indices: 22483123--22483238 Score: 64
Period size: 21 Copynumber: 5.6 Consensus size: 21
22483113 TTGTTTGTAC
22483123 TTCGATGCCCCTGAATTGCATA
1 TTCG-TGCCCCTGAATTGCATA
*
22483145 TTCGTGCCCCTG-TTTG--TA
1 TTCGTGCCCCTGAATTGCATA
* * *
22483163 CTTCGGTACCCCTAAATTGCACA
1 -TTC-GTGCCCCTGAATTGCATA
* * *
22483186 TACGTGCCCTTG-TTTG--TA
1 TTCGTGCCCCTGAATTGCATA
* *
22483204 CTTTGATACCCCTGAATTGCATA
1 -TTCG-TGCCCCTGAATTGCATA
22483227 TTCGTGCCCCTG
1 TTCGTGCCCCTG
22483239 TTTGTACTTT
Statistics
Matches: 66, Mismatches: 18, Indels: 21
0.63 0.17 0.20
Matches are distributed among these distances:
18 3 0.05
19 5 0.08
20 19 0.29
21 27 0.41
22 9 0.14
23 3 0.05
ACGTcount: A:0.17, C:0.29, G:0.18, T:0.35
Consensus pattern (21 bp):
TTCGTGCCCCTGAATTGCATA
Found at i:22495444 original size:6 final size:6
Alignment explanation
Indices: 22495433--22495479 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
22495423 AGCCAAAAAA
* * *
22495433 AAATAT AAATAT AAATAA AAATTT ATATAT AAA-AT AAAATAT AAATA
1 AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT -AAATAT AAATA
22495480 GCATAATTTA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
5 2 0.06
6 29 0.88
7 2 0.06
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
AAATAT
Found at i:22495452 original size:18 final size:17
Alignment explanation
Indices: 22495428--22495479 Score: 68
Period size: 18 Copynumber: 2.9 Consensus size: 17
22495418 ATGTTAGCCA
22495428 AAAAAAAATATAAATAT
1 AAAAAAAATATAAATAT
* *
22495445 AAATAAAAATTTATATAT
1 AAA-AAAAATATAAATAT
22495463 AAAATAAAATATAAATA
1 AAAA-AAAATATAAATA
22495480 GCATAATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
17 4 0.14
18 25 0.86
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
AAAAAAAATATAAATAT
Found at i:22500512 original size:22 final size:22
Alignment explanation
Indices: 22500468--22500583 Score: 90
Period size: 22 Copynumber: 5.1 Consensus size: 22
22500458 CCCACAAAAT
* *
22500468 ACAACCAAACATAGCCTCTAAAC
1 ACAA-CAAACATACCCTCCAAAC
* **
22500491 ACAACTAATTTACCCTCCAAAC
1 ACAACAAACATACCCTCCAAAC
22500513 ACAACCAAACATACCCTCC-AAC
1 ACAA-CAAACATACCCTCCAAAC
* * *
22500535 ACAACCAAATATAGCCTCCAAGC
1 ACAA-CAAACATACCCTCCAAAC
* * *
22500558 ACCACCAAATATACCCTTCAAAC
1 A-CAACAAACATACCCTCCAAAC
22500581 ACA
1 ACA
22500584 TCCATTTAAA
Statistics
Matches: 75, Mismatches: 15, Indels: 7
0.77 0.15 0.07
Matches are distributed among these distances:
22 39 0.52
23 34 0.45
24 2 0.03
ACGTcount: A:0.45, C:0.38, G:0.03, T:0.15
Consensus pattern (22 bp):
ACAACAAACATACCCTCCAAAC
Found at i:22500531 original size:23 final size:23
Alignment explanation
Indices: 22500468--22500583 Score: 128
Period size: 23 Copynumber: 5.1 Consensus size: 23
22500458 CCCACAAAAT
* * *
22500468 ACAACCAAACATAGCCTCTAAAC
1 ACAACCAAATATACCCTCCAAAC
* *
22500491 ACAA-CTAATTTACCCTCCAAAC
1 ACAACCAAATATACCCTCCAAAC
*
22500513 ACAACCAAACATACCCTCC-AAC
1 ACAACCAAATATACCCTCCAAAC
* *
22500535 ACAACCAAATATAGCCTCCAAGC
1 ACAACCAAATATACCCTCCAAAC
* *
22500558 ACCACCAAATATACCCTTCAAAC
1 ACAACCAAATATACCCTCCAAAC
22500581 ACA
1 ACA
22500584 TCCATTTAAA
Statistics
Matches: 75, Mismatches: 16, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
22 37 0.49
23 38 0.51
ACGTcount: A:0.45, C:0.38, G:0.03, T:0.15
Consensus pattern (23 bp):
ACAACCAAATATACCCTCCAAAC
Found at i:22500553 original size:45 final size:44
Alignment explanation
Indices: 22500468--22500583 Score: 133
Period size: 45 Copynumber: 2.6 Consensus size: 44
22500458 CCCACAAAAT
* * *
22500468 ACAACCAAACATAGCCTCTAAACACAACTAATTTACCCTCCAAAC
1 ACAACCAAACATACCCTC-AAACACAACAAATATACCCTCCAAAC
* * *
22500513 ACAACCAAACATACCCTCCAACACAACCAAATATAGCCTCCAAGC
1 ACAACCAAACATACCCTCAAACACAA-CAAATATACCCTCCAAAC
* *
22500558 ACCACCAAATATACCCTTCAAACACA
1 ACAACCAAACATACCC-TCAAACACA
22500584 TCCATTTAAA
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
44 7 0.12
45 45 0.75
46 8 0.13
ACGTcount: A:0.45, C:0.38, G:0.03, T:0.15
Consensus pattern (44 bp):
ACAACCAAACATACCCTCAAACACAACAAATATACCCTCCAAAC
Found at i:22506782 original size:40 final size:41
Alignment explanation
Indices: 22506732--22506821 Score: 101
Period size: 40 Copynumber: 2.2 Consensus size: 41
22506722 CAAGAGCTAC
* * * * *
22506732 CAATACATTCCCAAAGACACCTAGTGCTTTGGAGAACTAT-
1 CAATAAATTCCCAAAGACACCCAATGCTCTAGAGAACTATA
* *
22506772 CAATAAATTCCCACAGGCACCCAATGCTCTAGAGAACTATA
1 CAATAAATTCCCAAAGACACCCAATGCTCTAGAGAACTATA
22506813 CAATGAAAT
1 CAAT-AAAT
22506822 ACAACAAGTG
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
40 33 0.80
41 4 0.10
42 4 0.10
ACGTcount: A:0.39, C:0.26, G:0.13, T:0.22
Consensus pattern (41 bp):
CAATAAATTCCCAAAGACACCCAATGCTCTAGAGAACTATA
Found at i:22508493 original size:231 final size:231
Alignment explanation
Indices: 22508090--22508554 Score: 876
Period size: 231 Copynumber: 2.0 Consensus size: 231
22508080 TCAGAGTAAG
*
22508090 AATTAAGAATGCTTAGTAAGTTCAAATGGAGTTATTAAACTTACCTTGATCCATTAAAGCATAAA
1 AATTAAGAATGCTTAGTAAGTTCAAACGGAGTTATTAAACTTACCTTGATCCATTAAAGCATAAA
*
22508155 GAAAATGTCATACATCTTGGCATTCAAAAATGGCCATTCTTGGCACATATTGGCACATCTAAGTG
66 GAAAATGTCATACATCTTGGCATTCAAAAATGGCCATTCTTGGCACATATTGGCACATCTAAGTA
22508220 CATGTCAACATTATCAACTAAATAAGTTAGCCACTTTTACAAATCATGAGAAATATCTAAGACAT
131 CATGTCAACATTATCAACTAAATAAGTTAGCCACTTTTACAAATCATGAGAAATATCTAAGACAT
22508285 TAAGGCACTTCAATACTTATCACATATCACATATCA
196 TAAGGCACTTCAATACTTATCACATATCACATATCA
22508321 AATTAAGAATGCTTAGTAAGTTCAAACGGAGTTATTAAACTTACCTTGATCCATTAAAGCATAAA
1 AATTAAGAATGCTTAGTAAGTTCAAACGGAGTTATTAAACTTACCTTGATCCATTAAAGCATAAA
22508386 GAAAATGTCATACATCTTGGCATTCAAAAATGGCCATTCTTGGCACATATTGGCACATCTAAGTA
66 GAAAATGTCATACATCTTGGCATTCAAAAATGGCCATTCTTGGCACATATTGGCACATCTAAGTA
*
22508451 CATGTCAACATTATCAACTAAATAAGTTAGTCACTTTTACAAATCATGAGAAATATCTAAGACAT
131 CATGTCAACATTATCAACTAAATAAGTTAGCCACTTTTACAAATCATGAGAAATATCTAAGACAT
* * *
22508516 TAAGGTAGTTCAATACTTATCACATATCACATGTCA
196 TAAGGCACTTCAATACTTATCACATATCACATATCA
22508552 AAT
1 AAT
22508555 ATAAAACATA
Statistics
Matches: 228, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
231 228 1.00
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.31
Consensus pattern (231 bp):
AATTAAGAATGCTTAGTAAGTTCAAACGGAGTTATTAAACTTACCTTGATCCATTAAAGCATAAA
GAAAATGTCATACATCTTGGCATTCAAAAATGGCCATTCTTGGCACATATTGGCACATCTAAGTA
CATGTCAACATTATCAACTAAATAAGTTAGCCACTTTTACAAATCATGAGAAATATCTAAGACAT
TAAGGCACTTCAATACTTATCACATATCACATATCA
Found at i:22511730 original size:25 final size:25
Alignment explanation
Indices: 22511701--22511767 Score: 71
Period size: 25 Copynumber: 2.7 Consensus size: 25
22511691 AACTGTTTTT
*
22511701 GATAGTATATCCTAAAACTACTATA
1 GATAGTATATACTAAAACTACTATA
* * * *
22511726 TATAGTGTATACTGAGACTACTATA
1 GATAGTATATACTAAAACTACTATA
**
22511751 GATAGGCTATACTAAAA
1 GATAGTATATACTAAAA
22511768 ACACTCAAGT
Statistics
Matches: 32, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.31
Consensus pattern (25 bp):
GATAGTATATACTAAAACTACTATA
Found at i:22515935 original size:50 final size:50
Alignment explanation
Indices: 22515881--22516252 Score: 326
Period size: 50 Copynumber: 7.6 Consensus size: 50
22515871 GATCCTTTAA
* *
22515881 ACTGCAATGTCAGGGAAGTAAGATACGCTGTTGTAGCTTCAATCTGTTCC
1 ACTGCAATGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
* * ** * * **
22515931 ACTGCAATGCCTGGGAAGTAAGATTCACCATTGTGGCTTCAATCTTTTGA
1 ACTGCAATGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
*
22515981 ACTGCAATGTCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
1 ACTGCAATGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
* * * * * * * * **
22516031 GCTGC-ATCCCCA--AAAGTAAGATCCGCCGTTGTGGCTTCGATCTTTTAA
1 ACTGCAAT-GCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
* * * *
22516079 ATTGCAATGTCGGGGAAGTGAGATTCGCTGTTGTAGCTTCAATCTGTTCC
1 ACTGCAATGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
* * * * * * **
22516129 ACTGCATTGCCA--GAAGTAAGATTCGCCGTTATGGCTTCTATCTTTTAA
1 ACTGCAATGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
* * * * *
22516177 ATTGCAATGTCGGGGAAGTGAGATTCACTGTTGTAGCTTCAATCTGTTCC
1 ACTGCAATGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
* *
22516227 GCTGCATTGCCA--GAAGTAAGATTCGC
1 ACTGCAATGCCAGGGAAGTAAGATTCGC
22516253 CATTGTGGCT
Statistics
Matches: 240, Mismatches: 76, Indels: 14
0.73 0.23 0.04
Matches are distributed among these distances:
48 80 0.33
49 4 0.02
50 156 0.65
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.32
Consensus pattern (50 bp):
ACTGCAATGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
Found at i:22516104 original size:98 final size:98
Alignment explanation
Indices: 22515849--22516278 Score: 590
Period size: 98 Copynumber: 4.4 Consensus size: 98
22515839 GCCGAGGAAA
* * * *
22515849 TAAGATTCTCCATTGTGGCTTCGATCCTTTAAACTGCAATGTCAGGGAAGTAAGATACGCTGTTG
1 TAAGATTCGCCATTGTGGCTTCGATCTTTTAAATTGCAATGTCAGGGAAGTAAGATTCGCTGTTG
***
22515914 TAGCTTCAATCTGTTCCACTGCAATGCCTGGGAAG
66 TAGCTTCAATCTGTTCCACTGC-AT-CCCCAGAAG
* * * *
22515949 TAAGATTCACCATTGTGGCTTCAATCTTTTGAACTGCAATGTCAGGGAAGTAAGATTCGCTGTTG
1 TAAGATTCGCCATTGTGGCTTCGATCTTTTAAATTGCAATGTCAGGGAAGTAAGATTCGCTGTTG
* *
22516014 TAGCTTCAATCTGTTCCGCTGCATCCCCAAAAG
66 TAGCTTCAATCTGTTCCACTGCATCCCCAGAAG
* * * *
22516047 TAAGATCCGCCGTTGTGGCTTCGATCTTTTAAATTGCAATGTCGGGGAAGTGAGATTCGCTGTTG
1 TAAGATTCGCCATTGTGGCTTCGATCTTTTAAATTGCAATGTCAGGGAAGTAAGATTCGCTGTTG
**
22516112 TAGCTTCAATCTGTTCCACTGCATTGCCAGAAG
66 TAGCTTCAATCTGTTCCACTGCATCCCCAGAAG
* * * * * *
22516145 TAAGATTCGCCGTTATGGCTTCTATCTTTTAAATTGCAATGTCGGGGAAGTGAGATTCACTGTTG
1 TAAGATTCGCCATTGTGGCTTCGATCTTTTAAATTGCAATGTCAGGGAAGTAAGATTCGCTGTTG
* **
22516210 TAGCTTCAATCTGTTCCGCTGCATTGCCAGAAG
66 TAGCTTCAATCTGTTCCACTGCATCCCCAGAAG
22516243 TAAGATTCGCCATTGTGGCTTCGATCTTTTAAATTG
1 TAAGATTCGCCATTGTGGCTTCGATCTTTTAAATTG
22516279 GAAACTATGG
Statistics
Matches: 300, Mismatches: 30, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
98 217 0.72
99 2 0.01
100 81 0.27
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.33
Consensus pattern (98 bp):
TAAGATTCGCCATTGTGGCTTCGATCTTTTAAATTGCAATGTCAGGGAAGTAAGATTCGCTGTTG
TAGCTTCAATCTGTTCCACTGCATCCCCAGAAG
Found at i:22553287 original size:8 final size:8
Alignment explanation
Indices: 22553274--22553300 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
22553264 TGGACTATCG
22553274 ATTCAATC
1 ATTCAATC
22553282 ATTCAATC
1 ATTCAATC
22553290 ATTCAATC
1 ATTCAATC
22553298 ATT
1 ATT
22553301 TAAACCAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (8 bp):
ATTCAATC
Found at i:22560353 original size:74 final size:74
Alignment explanation
Indices: 22560232--22560380 Score: 289
Period size: 74 Copynumber: 2.0 Consensus size: 74
22560222 AATAGTTGCA
22560232 ACTAGATCCAGCTAACTCGTATCTTCACTTTCAAAACTGTCAAACATTTCTAAAGTTCTCATTAA
1 ACTAGATCCAGCTAACTCGTATCTTCACTTTCAAAACTGTCAAACATTTCTAAAGTTCTCATTAA
22560297 TGTTAACTG
66 TGTTAACTG
*
22560306 ACTAGGTCCAGCTAACTCGTATCTTCACTTTCAAAACTGTCAAACATTTCTAAAGTTCTCATTAA
1 ACTAGATCCAGCTAACTCGTATCTTCACTTTCAAAACTGTCAAACATTTCTAAAGTTCTCATTAA
22560371 TGTTAACTG
66 TGTTAACTG
22560380 A
1 A
22560381 AGTTTTTGAA
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 74 1.00
ACGTcount: A:0.32, C:0.23, G:0.10, T:0.35
Consensus pattern (74 bp):
ACTAGATCCAGCTAACTCGTATCTTCACTTTCAAAACTGTCAAACATTTCTAAAGTTCTCATTAA
TGTTAACTG
Found at i:22562760 original size:24 final size:24
Alignment explanation
Indices: 22562729--22562776 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
22562719 AATGCATTCA
* *
22562729 TTTGAATTT-TGGAAATTTTATGT
1 TTTGAATTTATGAAAATTGTATGT
22562752 TTTGCAATTTATGAAAATTGTATGT
1 TTTG-AATTTATGAAAATTGTATGT
22562777 GACTATAGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.19
24 5 0.24
25 12 0.57
ACGTcount: A:0.29, C:0.02, G:0.17, T:0.52
Consensus pattern (24 bp):
TTTGAATTTATGAAAATTGTATGT
Found at i:22567797 original size:6 final size:6
Alignment explanation
Indices: 22567783--22567897 Score: 86
Period size: 6 Copynumber: 19.2 Consensus size: 6
22567773 CCAGAGACAA
* * **
22567783 ATACAG ATGCAG ATGCAG ATACAG ACCCAG ATACAG ATACAG ATACAG
1 ATACAG ATACAG ATACAG ATACAG ATACAG ATACAG ATACAG ATACAG
* * * * * * * * *
22567831 ATGCAG ATACAG ATGCAA ACACAA ATTCAG ATACAA ATGCAG ACACAG
1 ATACAG ATACAG ATACAG ATACAG ATACAG ATACAG ATACAG ATACAG
* * *
22567879 ATTCAG TTACAG ATGCAG A
1 ATACAG ATACAG ATACAG A
22567898 CACCAATCCT
Statistics
Matches: 82, Mismatches: 27, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
6 82 1.00
ACGTcount: A:0.44, C:0.20, G:0.19, T:0.17
Consensus pattern (6 bp):
ATACAG
Found at i:22567801 original size:12 final size:12
Alignment explanation
Indices: 22567786--22567897 Score: 116
Period size: 12 Copynumber: 9.3 Consensus size: 12
22567776 GAGACAAATA
*
22567786 CAGATGCAGATG
1 CAGATACAGATG
**
22567798 CAGATACAGACC
1 CAGATACAGATG
*
22567810 CAGATACAGATA
1 CAGATACAGATG
22567822 CAGATACAGATG
1 CAGATACAGATG
22567834 CAGATACAGATG
1 CAGATACAGATG
* * * *
22567846 CAAACACAAATT
1 CAGATACAGATG
*
22567858 CAGATACAAATG
1 CAGATACAGATG
* *
22567870 CAGACACAGATT
1 CAGATACAGATG
*
22567882 CAGTTACAGATG
1 CAGATACAGATG
22567894 CAGA
1 CAGA
22567898 CACCAATCCT
Statistics
Matches: 80, Mismatches: 20, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 80 1.00
ACGTcount: A:0.44, C:0.21, G:0.20, T:0.16
Consensus pattern (12 bp):
CAGATACAGATG
Found at i:22567801 original size:24 final size:24
Alignment explanation
Indices: 22567774--22567900 Score: 119
Period size: 24 Copynumber: 5.3 Consensus size: 24
22567764 GATGCAATTC
* * *
22567774 CAGAGACAAATACAGATGCAGATG
1 CAGACACAGATACAGATACAGATG
* ** *
22567798 CAGATACAGACCCAGATACAGATA
1 CAGACACAGATACAGATACAGATG
* *
22567822 CAGATACAGATGCAGATACAGATG
1 CAGACACAGATACAGATACAGATG
* * * *
22567846 CAAACACAAATTCAGATACAAATG
1 CAGACACAGATACAGATACAGATG
* *
22567870 CAGACACAGATTCAGTTACAGATG
1 CAGACACAGATACAGATACAGATG
22567894 CAGACAC
1 CAGACAC
22567901 CAATCCTACC
Statistics
Matches: 85, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 85 1.00
ACGTcount: A:0.45, C:0.21, G:0.19, T:0.15
Consensus pattern (24 bp):
CAGACACAGATACAGATACAGATG
Found at i:22571041 original size:8 final size:8
Alignment explanation
Indices: 22571024--22571064 Score: 50
Period size: 8 Copynumber: 5.2 Consensus size: 8
22571014 AGATACAATA
*
22571024 TTTTTCAT
1 TTTTTAAT
22571032 TTTTTAAT
1 TTTTTAAT
22571040 TTTTTAA-
1 TTTTTAAT
22571047 TTTTT-AT
1 TTTTTAAT
22571054 TTGTTTAAT
1 TT-TTTAAT
22571063 TT
1 TT
22571065 ATTTTAAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
6 1 0.03
7 7 0.24
8 17 0.59
9 4 0.14
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (8 bp):
TTTTTAAT
Found at i:22571050 original size:15 final size:15
Alignment explanation
Indices: 22571032--22571064 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
22571022 TATTTTTCAT
22571032 TTTTTAATTT-TTTAA
1 TTTTT-ATTTGTTTAA
22571047 TTTTTATTTGTTTAA
1 TTTTTATTTGTTTAA
22571062 TTT
1 TTT
22571065 ATTTTAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (15 bp):
TTTTTATTTGTTTAA
Found at i:22576583 original size:32 final size:32
Alignment explanation
Indices: 22576543--22576666 Score: 158
Period size: 32 Copynumber: 3.9 Consensus size: 32
22576533 ATAAGTATAA
* *
22576543 TAATATGATTGGCACAAAGCCATCAGTAGCAG
1 TAATATGATCGGCACAAAGCCATCAGTAACAG
* * * **
22576575 TGATATGATCAGCACACAGCCATCAGTAATGG
1 TAATATGATCGGCACAAAGCCATCAGTAACAG
* *
22576607 TAATATGATCGGTACAAAGCCATCAGTAACGG
1 TAATATGATCGGCACAAAGCCATCAGTAACAG
*
22576639 TAATATAATCGGCACAAAGCCATCAGTA
1 TAATATGATCGGCACAAAGCCATCAGTA
22576667 GCATCGTAGA
Statistics
Matches: 78, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 78 1.00
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (32 bp):
TAATATGATCGGCACAAAGCCATCAGTAACAG
Found at i:22576629 original size:64 final size:64
Alignment explanation
Indices: 22576543--22576666 Score: 176
Period size: 64 Copynumber: 1.9 Consensus size: 64
22576533 ATAAGTATAA
* * * * *
22576543 TAATATGATTGGCACAAAGCCATCAGTAGCAGTGATATGATCAGCACACAGCCATCAGTAATGG
1 TAATATGATCGGCACAAAGCCATCAGTAACAGTAATATAATCAGCACAAAGCCATCAGTAATGG
* * *
22576607 TAATATGATCGGTACAAAGCCATCAGTAACGGTAATATAATCGGCACAAAGCCATCAGTA
1 TAATATGATCGGCACAAAGCCATCAGTAACAGTAATATAATCAGCACAAAGCCATCAGTA
22576667 GCATCGTAGA
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
64 52 1.00
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (64 bp):
TAATATGATCGGCACAAAGCCATCAGTAACAGTAATATAATCAGCACAAAGCCATCAGTAATGG
Found at i:22576861 original size:11 final size:11
Alignment explanation
Indices: 22576845--22576890 Score: 56
Period size: 11 Copynumber: 4.0 Consensus size: 11
22576835 CAGAATCAGT
22576845 CATACAAATCA
1 CATACAAATCA
22576856 CATACAAATCA
1 CATACAAATCA
*
22576867 GTCATACTAATCA
1 --CATACAAATCA
*
22576880 CAGACAAATCA
1 CATACAAATCA
22576891 ATCATTTACA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 20 0.67
13 10 0.33
ACGTcount: A:0.50, C:0.26, G:0.04, T:0.20
Consensus pattern (11 bp):
CATACAAATCA
Found at i:22576870 original size:24 final size:24
Alignment explanation
Indices: 22576838--22576895 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
22576828 CCATGCTCAG
*
22576838 AATCAGTCATACAAATCACATACA
1 AATCAGTCATACAAATCACAGACA
*
22576862 AATCAGTCATACTAATCACAGACA
1 AATCAGTCATACAAATCACAGACA
*
22576886 AATCAATCAT
1 AATCAGTCAT
22576896 TTACATCACG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.48, C:0.24, G:0.05, T:0.22
Consensus pattern (24 bp):
AATCAGTCATACAAATCACAGACA
Found at i:22576872 original size:13 final size:13
Alignment explanation
Indices: 22576838--22576879 Score: 61
Period size: 13 Copynumber: 3.4 Consensus size: 13
22576828 CCATGCTCAG
22576838 AATCAGTCATACA
1 AATCAGTCATACA
22576851 AATCA--CATACA
1 AATCAGTCATACA
*
22576862 AATCAGTCATACT
1 AATCAGTCATACA
22576875 AATCA
1 AATCA
22576880 CAGACAAATC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
11 11 0.42
13 15 0.58
ACGTcount: A:0.48, C:0.24, G:0.05, T:0.24
Consensus pattern (13 bp):
AATCAGTCATACA
Found at i:22576903 original size:24 final size:24
Alignment explanation
Indices: 22576852--22576924 Score: 85
Period size: 24 Copynumber: 3.0 Consensus size: 24
22576842 AGTCATACAA
* * *
22576852 ATCACATACAAATCAGTCATACTA-
1 ATCACAGACAAATCAATCAT-TTAC
22576876 ATCACAGACAAATCAATCATTTAC
1 ATCACAGACAAATCAATCATTTAC
* *
22576900 ATCACGGACAAATAAATCATTTAC
1 ATCACAGACAAATCAATCATTTAC
22576924 A
1 A
22576925 CTCGAGGGGA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
23 2 0.05
24 41 0.95
ACGTcount: A:0.47, C:0.23, G:0.05, T:0.25
Consensus pattern (24 bp):
ATCACAGACAAATCAATCATTTAC
Found at i:22576973 original size:27 final size:27
Alignment explanation
Indices: 22576939--22577298 Score: 174
Period size: 27 Copynumber: 13.4 Consensus size: 27
22576929 AGGGGAAAAA
*
22576939 GTCA-TTTACCCTTCAAGGGCATTACG
1 GTCATTTTACCCTTCAAGGGTATTACG
* *
22576965 GTAATTTTA-CCTT-ACAGTGGTATTTCG
1 GTCATTTTACCCTTCA-AG-GGTATTACG
* *
22576992 GTCATTTAACCC-T-ATGGGGTATTACG
1 GTCATTTTACCCTTCA-AGGGTATTACG
* * *
22577018 GTCATTTTACCCTAC-AGAGGCATTACA
1 GTCATTTTACCCTTCAAG-GGTATTACG
* ** * *
22577045 GTTATTTTACCCTAT-GGGGGTTTTTCG
1 GTCATTTTACCCT-TCAAGGGTATTACG
*
22577072 GT-ATTTTACCCTACAAGGGTATTACG
1 GTCATTTTACCCTTCAAGGGTATTACG
**
22577098 GTCATTTTA-CCTATCAAGGGTATTTTG
1 GTCATTTTACCCT-TCAAGGGTATTACG
* * * * *
22577125 ATAATTTTACCCATCGAGGGTATTTCG
1 GTCATTTTACCCTTCAAGGGTATTACG
* * **
22577152 GTCATTTTACCCATCAGGGGTATTTTG
1 GTCATTTTACCCTTCAAGGGTATTACG
* * * * *
22577179 ATAATTATACCCATCGAGGGTATTTTAC-
1 GTCATTTTACCCTTCAAGGGTA--TTACG
* * *
22577207 -TCATTTTACCCATCGAGGATAATT-CG
1 GTCATTTTACCCTTCAAGGGT-ATTACG
*
22577233 GTCATTTTACCCTTCAAGGGTAATT-CA
1 GTCATTTTACCCTTCAAGGGT-ATTACG
* * *
22577260 ATCATTTTACCCTACGAGGGTAATTTA--
1 GTCATTTTACCCTTCAAGGGT-A-TTACG
22577287 GTCATTTTACCC
1 GTCATTTTACCC
22577299 CCTCGGGGGT
Statistics
Matches: 258, Mismatches: 56, Indels: 39
0.73 0.16 0.11
Matches are distributed among these distances:
25 2 0.01
26 54 0.21
27 192 0.74
28 8 0.03
29 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCCTTCAAGGGTATTACG
Found at i:22577027 original size:80 final size:79
Alignment explanation
Indices: 22576939--22577163 Score: 217
Period size: 80 Copynumber: 2.8 Consensus size: 79
22576929 AGGGGAAAAA
*
22576939 GTCA-TTTACCCTTCAAGGGCATTACGGTAATTTTACCTTACAGTGGTATTTCGGTCATTTAACC
1 GTCATTTTACCCTTCAAGGGCATTACGGTAATTTTACC-TACAG-GGTATTTCGGTCATTTTACC
**
22577003 CTA-TGGGGTATTACG
64 CTACAAGGGTATTACG
* * * ** *
22577018 GTCATTTTACCCTAC-AGAGGCATTACAGTTATTTTACCCTATGGGGGTTTTTCGGT-ATTTTAC
1 GTCATTTTACCCTTCAAG-GGCATTACGGTAATTTTA-CCTA-CAGGGTATTTCGGTCATTTTAC
22577081 CCTACAAGGGTATTACG
63 CCTACAAGGGTATTACG
* ** * *
22577098 GTCATTTTA-CCTATCAAGGGTATTTTGATAATTTTACCCATCGAGGGTATTTCGGTCATTTTAC
1 GTCATTTTACCCT-TCAAGGGCATTACGGTAATTTTACCTA-C-AGGGTATTTCGGTCATTTTAC
22577162 CC
63 CC
22577164 ATCAGGGGTA
Statistics
Matches: 117, Mismatches: 20, Indels: 16
0.76 0.13 0.10
Matches are distributed among these distances:
79 23 0.20
80 80 0.68
81 14 0.12
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (79 bp):
GTCATTTTACCCTTCAAGGGCATTACGGTAATTTTACCTACAGGGTATTTCGGTCATTTTACCCT
ACAAGGGTATTACG
Found at i:22577057 original size:53 final size:53
Alignment explanation
Indices: 22576959--22577108 Score: 178
Period size: 53 Copynumber: 2.8 Consensus size: 53
22576949 CTTCAAGGGC
* * * *
22576959 ATTACGGTAATTTTACCTTACAGTGGTATTTCGGTCATTTAACCCTAT-GGGGT
1 ATTACGGT-ATTTTACCCTACAGAGGTATTACGGTCATTTTACCCTATGGGGGT
* * *
22577012 ATTACGGTCATTTTACCCTACAGAGGCATTACAGTTATTTTACCCTATGGGGGT
1 ATTACGGT-ATTTTACCCTACAGAGGTATTACGGTCATTTTACCCTATGGGGGT
* *
22577066 TTTTCGGTATTTTACCCTACA-AGGGTATTACGGTCATTTTACC
1 ATTACGGTATTTTACCCTACAGA-GGTATTACGGTCATTTTACC
22577109 TATCAAGGGT
Statistics
Matches: 82, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
52 1 0.01
53 70 0.85
54 11 0.13
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.39
Consensus pattern (53 bp):
ATTACGGTATTTTACCCTACAGAGGTATTACGGTCATTTTACCCTATGGGGGT
Found at i:22577145 original size:54 final size:54
Alignment explanation
Indices: 22577074--22577220 Score: 201
Period size: 54 Copynumber: 2.7 Consensus size: 54
22577064 GTTTTTCGGT
* *
22577074 ATTTTACCC-TACAAGGGTATTACGGTCATTTTACCTATCAAGGGTATTTTGATA
1 ATTTTACCCAT-CGAGGGTATTACGGTCATTTTACCCATCAAGGGTATTTTGATA
* *
22577128 ATTTTACCCATCGAGGGTATTTCGGTCATTTTACCCATCAGGGGTATTTTGATA
1 ATTTTACCCATCGAGGGTATTACGGTCATTTTACCCATCAAGGGTATTTTGATA
*
22577182 ATTATACCCATCGAGGGTATTTTAC--TCATTTTACCCATC
1 ATTTTACCCATCGAGGGTA--TTACGGTCATTTTACCCATC
22577221 GAGGATAATT
Statistics
Matches: 84, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
54 80 0.95
55 1 0.01
56 3 0.04
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (54 bp):
ATTTTACCCATCGAGGGTATTACGGTCATTTTACCCATCAAGGGTATTTTGATA
Found at i:22577244 original size:54 final size:54
Alignment explanation
Indices: 22577099--22577321 Score: 198
Period size: 54 Copynumber: 4.1 Consensus size: 54
22577089 GGTATTACGG
* * * * * **
22577099 TCATTTTACCTATCAAGGGTATTTTGATAATTTTACCCATCGAGGGTATTTCGG
1 TCATTTTACCCATCGAGGGTAATTTGGTCATTTTACCCATCGAGGGTATTTCAA
* * * * * *
22577153 TCATTTTACCCATC-AGGGGTATTTTGATAATTATACCCATCGAGGGTATTTTAC
1 TCATTTTACCCATCGA-GGGTAATTTGGTCATTTTACCCATCGAGGGTATTTCAA
* * * * *
22577207 TCATTTTACCCATCGAGGATAATTCGGTCATTTTACCCTTCAAGGGTAATTCAA
1 TCATTTTACCCATCGAGGGTAATTTGGTCATTTTACCCATCGAGGGTATTTCAA
* * * * *
22577261 TCATTTTACCC-TACGAGGGTAATTTAGTCATTTTACCCCCTCGGGGGTAATTCGA
1 TCATTTTACCCAT-CGAGGGTAATTTGGTCATTTTA-CCCATCGAGGGTATTTCAA
22577316 TCATTT
1 TCATTT
22577322 AACAAATATT
Statistics
Matches: 142, Mismatches: 23, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
53 2 0.01
54 118 0.83
55 22 0.15
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (54 bp):
TCATTTTACCCATCGAGGGTAATTTGGTCATTTTACCCATCGAGGGTATTTCAA
Found at i:22577271 original size:81 final size:80
Alignment explanation
Indices: 22577068--22577321 Score: 271
Period size: 81 Copynumber: 3.1 Consensus size: 80
22577058 ATGGGGGTTT
* * * * *
22577068 TTCGGT-ATTTTACCCTACAAGGGT-ATTACGGTCATTTTACCTATCAAGGGTATTTTGATAATT
1 TTCGGTCATTTTACCCTTCAAGGGTAATT-CGATCATTTTACCCATCGAGGGTATTTT-ATCATT
*
22577131 TTACCCATCGAGGGTAT
64 TTACCCATCGAGGGTAA
* * * * * *
22577148 TTCGGTCATTTTACCCATCAGGGGTATTTTGATAATTATACCCATCGAGGGTATTTTACTCATTT
1 TTCGGTCATTTTACCCTTCAAGGGTAATTCGATCATTTTACCCATCGAGGGTATTTTA-TCATTT
*
22577213 TACCCATCGAGGATAA
65 TACCCATCGAGGGTAA
* *
22577229 TTCGGTCATTTTACCCTTCAAGGGTAATTCAATCATTTTACCC-TACGAGGGTAATTTAGTCATT
1 TTCGGTCATTTTACCCTTCAAGGGTAATTCGATCATTTTACCCAT-CGAGGGTATTTTA-TCATT
* *
22577293 TTACCCCCTCGGGGGTAA
64 TTA-CCCATCGAGGGTAA
*
22577311 TTCGATCATTT
1 TTCGGTCATTT
22577322 AACAAATATT
Statistics
Matches: 143, Mismatches: 26, Indels: 8
0.81 0.15 0.05
Matches are distributed among these distances:
80 8 0.06
81 112 0.78
82 23 0.16
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (80 bp):
TTCGGTCATTTTACCCTTCAAGGGTAATTCGATCATTTTACCCATCGAGGGTATTTTATCATTTT
ACCCATCGAGGGTAA
Found at i:22577322 original size:27 final size:27
Alignment explanation
Indices: 22577193--22577321 Score: 109
Period size: 27 Copynumber: 4.7 Consensus size: 27
22577183 TTATACCCAT
* * *
22577193 CGAGGGTATTTTACTCATTTTACCC-A
1 CGAGGGTAATTCAATCATTTTACCCTA
* ** *
22577219 TCGAGGATAATTCGGTCATTTTACCCTT
1 -CGAGGGTAATTCAATCATTTTACCCTA
*
22577247 CAAGGGTAATTCAATCATTTTACCCTA
1 CGAGGGTAATTCAATCATTTTACCCTA
* *
22577274 CGAGGGTAATTTAGTCATTTTACCCCCT-
1 CGAGGGTAATTCAATCATTTTA--CCCTA
* *
22577302 CGGGGGTAATTCGATCATTT
1 CGAGGGTAATTCAATCATTT
22577322 AACAAATATT
Statistics
Matches: 81, Mismatches: 18, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
27 61 0.75
28 16 0.20
29 4 0.05
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (27 bp):
CGAGGGTAATTCAATCATTTTACCCTA
Found at i:22579746 original size:41 final size:41
Alignment explanation
Indices: 22579701--22579882 Score: 258
Period size: 41 Copynumber: 4.4 Consensus size: 41
22579691 ACAGATTCAA
* * * ** *
22579701 CGGCACGTAGACTGCTAGACTTATAGCTTGATTCAGATCAC
1 CGGCACGTAGCCTGCTAGATTTATAACCCGATTCAAATCAC
*
22579742 CGGCACGTAGCCTGCTAGGTTTATAACCCGATTCAAATCAC
1 CGGCACGTAGCCTGCTAGATTTATAACCCGATTCAAATCAC
* * *
22579783 CGGCATGTAGCCTGCTAGGTTTCTAACCCGATTCAAATCAC
1 CGGCACGTAGCCTGCTAGATTTATAACCCGATTCAAATCAC
22579824 CGGCACGTAGCCTGCTA-AGTTTATAACCCGATTCAAATCAC
1 CGGCACGTAGCCTGCTAGA-TTTATAACCCGATTCAAATCAC
22579865 CGGCACGTAGCCTGCTAG
1 CGGCACGTAGCCTGCTAG
22579883 GCGCTTAGCC
Statistics
Matches: 127, Mismatches: 12, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
41 127 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.25
Consensus pattern (41 bp):
CGGCACGTAGCCTGCTAGATTTATAACCCGATTCAAATCAC
Found at i:22580534 original size:12 final size:12
Alignment explanation
Indices: 22580517--22580541 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
22580507 ATTTTAGCAT
22580517 TATATATATACA
1 TATATATATACA
22580529 TATATATATACA
1 TATATATATACA
22580541 T
1 T
22580542 GCTTATTCGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (12 bp):
TATATATATACA
Found at i:22581465 original size:16 final size:19
Alignment explanation
Indices: 22581430--22581468 Score: 57
Period size: 16 Copynumber: 2.2 Consensus size: 19
22581420 TATGTTTTGT
22581430 TTTATTATATTATACATTA
1 TTTATTATATTATACATTA
22581449 TTTATTA-ATT-TAC-TTA
1 TTTATTATATTATACATTA
22581465 TTTA
1 TTTA
22581469 ACCTTTAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 7 0.35
17 3 0.15
18 3 0.15
19 7 0.35
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTATTATATTATACATTA
Found at i:22587495 original size:41 final size:41
Alignment explanation
Indices: 22587479--22587672 Score: 370
Period size: 41 Copynumber: 4.7 Consensus size: 41
22587469 CTTATAGCTT
* *
22587479 GATTCAGATCACCGGCACGTAGCCTGCTAGGTTTATAACCT
1 GATTCAAATCACCGGCACGTAGCCTGCTAGGTTTATAACCC
22587520 GATTCAAATCACCGGCACGTAGCCTGCTAGGTTTATAACCC
1 GATTCAAATCACCGGCACGTAGCCTGCTAGGTTTATAACCC
22587561 GATTCAAATCACCGGCACGTAGCCTGCTAGGTTTATAACCC
1 GATTCAAATCACCGGCACGTAGCCTGCTAGGTTTATAACCC
22587602 GATTCAAATCACCGGCACGTAGCCTGCTAGGTTTATAACCC
1 GATTCAAATCACCGGCACGTAGCCTGCTAGGTTTATAACCC
22587643 GATTCAAATCACCGGCACGTAGCCTGCTAG
1 GATTCAAATCACCGGCACGTAGCCTGCTAG
22587673 CGCTTAGCCT
Statistics
Matches: 151, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
41 151 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (41 bp):
GATTCAAATCACCGGCACGTAGCCTGCTAGGTTTATAACCC
Found at i:22587980 original size:19 final size:19
Alignment explanation
Indices: 22587948--22587984 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
22587938 AGCTCATCAA
22587948 TATATAATAGATATACATT
1 TATATAATAGATATACATT
* *
22587967 TATATTATATATATACAT
1 TATATAATAGATATACAT
22587985 ATACATATTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (19 bp):
TATATAATAGATATACATT
Found at i:22588311 original size:12 final size:12
Alignment explanation
Indices: 22588294--22588319 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
22588284 TATTAGCATT
22588294 ATATATATATAC
1 ATATATATATAC
22588306 ATATATATATAC
1 ATATATATATAC
22588318 AT
1 AT
22588320 GCTTATTCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
ATATATATATAC
Found at i:22595173 original size:41 final size:41
Alignment explanation
Indices: 22595157--22595351 Score: 372
Period size: 41 Copynumber: 4.8 Consensus size: 41
22595147 CTTATAGCTT
* *
22595157 GATTCAGATCACCGGCACGTAGCCTGCTAGGTTTATAACCT
1 GATTCAAATCACCGGCACGTAGCCTGCTAGGTTTATAACCC
22595198 GATTCAAATCACCGGCACGTAGCCTGCTAGGTTTATAACCC
1 GATTCAAATCACCGGCACGTAGCCTGCTAGGTTTATAACCC
22595239 GATTCAAATCACCGGCACGTAGCCTGCTAGGTTTATAACCC
1 GATTCAAATCACCGGCACGTAGCCTGCTAGGTTTATAACCC
22595280 GATTCAAATCACCGGCACGTAGCCTGCTAGGTTTATAACCC
1 GATTCAAATCACCGGCACGTAGCCTGCTAGGTTTATAACCC
22595321 GATTCAAATCACCGGCACGTAGCCTGCTAGG
1 GATTCAAATCACCGGCACGTAGCCTGCTAGG
22595352 CGCTTAGCCT
Statistics
Matches: 152, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
41 152 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (41 bp):
GATTCAAATCACCGGCACGTAGCCTGCTAGGTTTATAACCC
Found at i:22595970 original size:2 final size:2
Alignment explanation
Indices: 22595963--22596015 Score: 65
Period size: 2 Copynumber: 27.0 Consensus size: 2
22595953 AATAACTTTC
*
22595963 TA TA TA TA TA TA TA TA TA TA TA T- TA GCA T- TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA
*
22596004 CA TA TA TA TA TA
1 TA TA TA TA TA TA
22596016 CATGCTTATT
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
1 2 0.05
2 41 0.93
3 1 0.02
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (2 bp):
TA
Found at i:22596227 original size:15 final size:16
Alignment explanation
Indices: 22596202--22596233 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
22596192 CAATTAGTAT
22596202 ACATGAATAAATTTTA
1 ACATGAATAAATTTTA
22596218 ACAT-AATAAATTTTA
1 ACATGAATAAATTTTA
22596233 A
1 A
22596234 TTGCTAATAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.53, C:0.06, G:0.03, T:0.38
Consensus pattern (16 bp):
ACATGAATAAATTTTA
Found at i:22596947 original size:16 final size:19
Alignment explanation
Indices: 22596912--22596950 Score: 57
Period size: 16 Copynumber: 2.2 Consensus size: 19
22596902 TATGTTTTGT
22596912 TTTATTATATTATACATTA
1 TTTATTATATTATACATTA
22596931 TTTATTA-ATT-TAC-TTA
1 TTTATTATATTATACATTA
22596947 TTTA
1 TTTA
22596951 ACCTTTAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 7 0.35
17 3 0.15
18 3 0.15
19 7 0.35
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTATTATATTATACATTA
Found at i:22608133 original size:16 final size:19
Alignment explanation
Indices: 22608098--22608136 Score: 57
Period size: 16 Copynumber: 2.2 Consensus size: 19
22608088 TATGTTTTGT
22608098 TTTATTATATTATACATTA
1 TTTATTATATTATACATTA
22608117 TTTATTA-ATT-TAC-TTA
1 TTTATTATATTATACATTA
22608133 TTTA
1 TTTA
22608137 ACCTTTAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 7 0.35
17 3 0.15
18 3 0.15
19 7 0.35
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTATTATATTATACATTA
Found at i:22608592 original size:41 final size:41
Alignment explanation
Indices: 22608473--22608615 Score: 137
Period size: 41 Copynumber: 3.5 Consensus size: 41
22608463 GGTTGTTACA
* ** *
22608473 GCCTAGCAGGCTTTATGCCGGTGAATTATAGCAGGCTTTAT
1 GCCTAGCAGGCTTTATGCCGGTGTATTATAATAAGCTTTAT
** * * *
22608514 GCCTAGCAGGCTTCGTGCCGGTGTATCAT-ATCTAGCTTTGT
1 GCCTAGCAGGCTTTATGCCGGTGTATTATAAT-AAGCTTTAT
* *
22608555 GCCTAGAAGGCTTTATGCCGGTGTATTTTAATAAGCTTTAT
1 GCCTAGCAGGCTTTATGCCGGTGTATTATAATAAGCTTTAT
* *
22608596 ACATCA-CAGGCTTTATGCCG
1 GCCT-AGCAGGCTTTATGCCG
22608616 ATGTGGTATC
Statistics
Matches: 80, Mismatches: 19, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
41 77 0.96
42 3 0.04
ACGTcount: A:0.21, C:0.21, G:0.24, T:0.34
Consensus pattern (41 bp):
GCCTAGCAGGCTTTATGCCGGTGTATTATAATAAGCTTTAT
Found at i:22612676 original size:41 final size:41
Alignment explanation
Indices: 22612608--22612768 Score: 182
Period size: 41 Copynumber: 3.9 Consensus size: 41
22612598 TGAAAATAAG
* * *
22612608 ATGTTTCAGACTTTACGTCCAAG-AGGCTTGATGCCGATGAA
1 ATGTTTCAGACTTTATGT-CTAGCAGGCTTGATGCCGGTGAA
22612649 ATGTTTCAGACTTTATGTCTAGCAGGCTTGATGCCGGTGAA
1 ATGTTTCAGACTTTATGTCTAGCAGGCTTGATGCCGGTGAA
* **
22612690 TTACTTCAGACTTTATGTCTAGCAGGCTTTG-TGCCGGTGAA
1 ATGTTTCAGACTTTATGTCTAGCAGGC-TTGATGCCGGTGAA
* * * * * *
22612731 ATGTATCGGGCTTTGTGCCTAGCAGGCTTTATGCCGGT
1 ATGTTTCAGACTTTATGTCTAGCAGGCTTGATGCCGGT
22612769 TTTTTATACA
Statistics
Matches: 102, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
40 5 0.05
41 94 0.92
42 3 0.03
ACGTcount: A:0.20, C:0.19, G:0.27, T:0.34
Consensus pattern (41 bp):
ATGTTTCAGACTTTATGTCTAGCAGGCTTGATGCCGGTGAA
Found at i:22612731 original size:82 final size:82
Alignment explanation
Indices: 22612612--22612768 Score: 201
Period size: 82 Copynumber: 1.9 Consensus size: 82
22612602 AATAAGATGT
* *
22612612 TTCAGACTTTACGTCCAAGAGGCTTGATGCCGATGAAATGTTTCAGACTTTATGTCTAGCAGGCT
1 TTCAGACTTTACGTCCAAGAGGCTTGATGCCGATGAAATGTATCAGACTTTATGCCTAGCAGGCT
22612677 TGATGCCGGTGAATTAC
66 TGATGCCGGTGAATTAC
* * * * * *
22612694 TTCAGACTTTATGT-CTAGCAGGCTTTG-TGCCGGTGAAATGTATCGGGCTTTGTGCCTAGCAGG
1 TTCAGACTTTACGTCCAAG-AGGC-TTGATGCCGATGAAATGTATCAGACTTTATGCCTAGCAGG
*
22612757 CTTTATGCCGGT
64 CTTGATGCCGGT
22612769 TTTTTATACA
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
81 3 0.05
82 58 0.91
83 3 0.05
ACGTcount: A:0.20, C:0.20, G:0.27, T:0.33
Consensus pattern (82 bp):
TTCAGACTTTACGTCCAAGAGGCTTGATGCCGATGAAATGTATCAGACTTTATGCCTAGCAGGCT
TGATGCCGGTGAATTAC
Found at i:22616672 original size:46 final size:46
Alignment explanation
Indices: 22616587--22616674 Score: 115
Period size: 46 Copynumber: 1.9 Consensus size: 46
22616577 AAATATGCAG
* * * *
22616587 TGTGGGCCTTAGCCCATTACAGTATCAGAATTAGAAATAGAATACA
1 TGTGGGCCTAAGCCCAATACAGTATCAAAATCAGAAATAGAATACA
*
22616633 TGTGGGCCTAAGCCCAATACAGTGA-CAAAATCAGTAATAGAA
1 TGTGGGCCTAAGCCCAATACAGT-ATCAAAATCAGAAATAGAA
22616675 ATGCAACAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
46 35 0.97
47 1 0.03
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.23
Consensus pattern (46 bp):
TGTGGGCCTAAGCCCAATACAGTATCAAAATCAGAAATAGAATACA
Found at i:22616945 original size:32 final size:32
Alignment explanation
Indices: 22616890--22617028 Score: 163
Period size: 32 Copynumber: 4.4 Consensus size: 32
22616880 GAATGGCTAC
* **
22616890 AAGCCATAAGT-ACAGTAATATGATTAGCACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
* * *
22616921 AAGCCATCAGTAGCAGTGATATGATCGACACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
* ** * *
22616953 CAGCCATCAGTAATGGTAATATGATCGGTACG
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
*
22616985 AAGCCATCAGTAACGGTAATATGATCGGCACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
22617017 AAGCCATCAGTA
1 AAGCCATCAGTA
22617029 GCATCGCAGC
Statistics
Matches: 89, Mismatches: 18, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
31 10 0.11
32 79 0.89
ACGTcount: A:0.38, C:0.20, G:0.21, T:0.21
Consensus pattern (32 bp):
AAGCCATCAGTAACAGTAATATGATCGGCACA
Found at i:22617201 original size:24 final size:24
Alignment explanation
Indices: 22617173--22617230 Score: 91
Period size: 24 Copynumber: 2.4 Consensus size: 24
22617163 ACATTTTCAG
*
22617173 AATCAGTCATACGAATCACAGAA-A
1 AATCAGTCATACCAATCACA-AACA
22617197 AATCAGTCATACCAATCACAAACA
1 AATCAGTCATACCAATCACAAACA
22617221 AATCAGTCAT
1 AATCAGTCAT
22617231 TTAAATCATA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
23 2 0.06
24 30 0.94
ACGTcount: A:0.48, C:0.24, G:0.09, T:0.19
Consensus pattern (24 bp):
AATCAGTCATACCAATCACAAACA
Found at i:22617237 original size:24 final size:24
Alignment explanation
Indices: 22617186--22617263 Score: 77
Period size: 24 Copynumber: 3.2 Consensus size: 24
22617176 CAGTCATACG
***
22617186 AATCACAGAA-AAATCAGTCATACC
1 AATCACA-AACAAATCAGTCATTTA
22617210 AATCACAAACAAATCAGTCATTTA
1 AATCACAAACAAATCAGTCATTTA
* * *
22617234 AATCATAGACAAATCAATCATTTA
1 AATCACAAACAAATCAGTCATTTA
*
22617258 CATCAC
1 AATCAC
22617264 GGACAAATAA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
23 2 0.04
24 43 0.96
ACGTcount: A:0.49, C:0.23, G:0.05, T:0.23
Consensus pattern (24 bp):
AATCACAAACAAATCAGTCATTTA
Found at i:22617268 original size:24 final size:24
Alignment explanation
Indices: 22617211--22617283 Score: 83
Period size: 24 Copynumber: 3.0 Consensus size: 24
22617201 AGTCATACCA
* * *
22617211 ATCACAAACAAATCAGTCATTTAA
1 ATCACAGACAAATCAATCATTTAC
*
22617235 ATCATAGACAAATCAATCATTTAC
1 ATCACAGACAAATCAATCATTTAC
* * *
22617259 ATCACGGACAAATAAATCACTTAC
1 ATCACAGACAAATCAATCATTTAC
22617283 A
1 A
22617284 CTCGAAAGGT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.48, C:0.22, G:0.05, T:0.25
Consensus pattern (24 bp):
ATCACAGACAAATCAATCATTTAC
Found at i:22617357 original size:27 final size:27
Alignment explanation
Indices: 22617327--22617607 Score: 145
Period size: 27 Copynumber: 10.4 Consensus size: 27
22617317 GGCATTACGG
* * *
22617327 TCATTTTACCTTATAGTGGAATTTCGA
1 TCATTTTACCCTATAGGGGTATTTCGA
* * *
22617354 TCATTTAACCCTATGGGGGTTTTTCGA
1 TCATTTTACCCTATAGGGGTATTTCGA
* *
22617381 TCATTTTACCCTACAGGGGTATTACGA
1 TCATTTTACCCTATAGGGGTATTTCGA
* *
22617408 TTATTTTA-CCTATCGAGGGTATTTC-A
1 TCATTTTACCCTATAG-GGGTATTTCGA
* * *
22617434 TTAATTTTA-CCTATCGAGGGTATTTCAA
1 -TCATTTTACCCTATAG-GGGTATTTCGA
* *
22617462 TCATTTTACCC-ATCGAGGGTATTT-TA
1 TCATTTTACCCTATAG-GGGTATTTCGA
* * *
22617488 GTCATTTTACCC-ATCGAGGGTATTTTGG
1 -TCATTTTACCCTATAG-GGGTATTTCGA
* * *
22617516 TAATTTTACCC-ATCGAGGGTAATTC-A
1 TCATTTTACCCTATAG-GGGTATTTCGA
* *
22617542 GTCATTTTACCCT-TCAGAGGTAATTTAG-
1 -TCATTTTACCCTAT-AGGGGT-ATTTCGA
* *
22617570 TCATTTTACCCTA-CGAGGGTAATTT-GG
1 TCATTTTACCCTATAG-GGGT-ATTTCGA
22617597 TCATTTTACCC
1 TCATTTTACCC
22617608 CTCGAGGGTA
Statistics
Matches: 209, Mismatches: 31, Indels: 28
0.78 0.12 0.10
Matches are distributed among these distances:
26 9 0.04
27 193 0.92
28 7 0.03
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.40
Consensus pattern (27 bp):
TCATTTTACCCTATAGGGGTATTTCGA
Found at i:22617441 original size:54 final size:55
Alignment explanation
Indices: 22617326--22617617 Score: 225
Period size: 54 Copynumber: 5.4 Consensus size: 55
22617316 GGGCATTACG
* * * * * *
22617326 GTCATTTTACCTTAT--AGTGGAATTTCGATCATTTAACCCTAT-GGGGGTTTTTC-
1 GTCATTTTACCCTATCGAG-GGTATTTCGATAATTTTACCC-ATCGAGGGTATTTCA
* * *
22617379 GATCATTTTACCCTA-C-AGGGGTATTACGATTATTTTACCTATCGAGGGTATTTCA
1 G-TCATTTTACCCTATCGA-GGGTATTTCGATAATTTTACCCATCGAGGGTATTTCA
* * * * *
22617434 TTAATTTTA-CCTATCGAGGGTATTTCAATCATTTTACCCATCGAGGGTATTTTA
1 GTCATTTTACCCTATCGAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCA
* * *
22617488 GTCATTTTACCC-ATCGAGGGTATTTTGGTAATTTTACCCATCGAGGGTAATTCA
1 GTCATTTTACCCTATCGAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCA
* * *
22617542 GTCATTTTACCCT-TC-AGAGGTAATTTAG-TCATTTTACCC-TACGAGGGTAATTT-G
1 GTCATTTTACCCTATCGAG-GGT-ATTTCGATAATTTTACCCAT-CGAGGGT-ATTTCA
*
22617596 GTCATTTTACCC-CTCGAGGGTA
1 GTCATTTTACCCTATCGAGGGTA
22617618 ATTCAGTCAT
Statistics
Matches: 197, Mismatches: 27, Indels: 30
0.78 0.11 0.12
Matches are distributed among these distances:
53 11 0.06
54 172 0.87
55 14 0.07
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.39
Consensus pattern (55 bp):
GTCATTTTACCCTATCGAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCA
Found at i:22617465 original size:81 final size:80
Alignment explanation
Indices: 22617370--22617629 Score: 260
Period size: 81 Copynumber: 3.2 Consensus size: 80
22617360 AACCCTATGG
* * * *
22617370 GGGTTTTTCGATCATTTTACCCTACAGGGGTA-TTACGATTATTTTACCTATCGAGGGTATTTCA
1 GGGTATTTCAATCATTTTACCCTACAGGGGTATTTA-G-TCATTTTACCCATCGAGGGTATTTCA
* *
22617434 TTAATTTTACCTATCGA
64 GTAATTTTACCCATCGA
*
22617451 GGGTATTTCAATCATTTTACCC-ATC-GAGGGTATTTTAGTCATTTTACCCATCGAGGGTATTTT
1 GGGTATTTCAATCATTTTACCCTA-CAG-GGGTA-TTTAGTCATTTTACCCATCGAGGGTATTTC
*
22617514 GGTAATTTTACCCATCGA
63 AGTAATTTTACCCATCGA
* * * *
22617532 GGGTAATTCAGTCATTTTACCCTTCAGAGGTAATTTAGTCATTTTACCC-TACGAGGGTAATTT-
1 GGGTATTTCAATCATTTTACCCTACAGGGGT-ATTTAGTCATTTTACCCAT-CGAGGGT-ATTTC
* * *
22617595 GGTCATTTTACCCCTCGA
63 AGTAATTTTACCCATCGA
* *
22617613 GGGTAATTCAGTCATTT
1 GGGTATTTCAATCATTT
22617630 AACAAATATT
Statistics
Matches: 156, Mismatches: 14, Indels: 18
0.83 0.07 0.10
Matches are distributed among these distances:
80 3 0.02
81 143 0.92
82 7 0.04
83 3 0.02
ACGTcount: A:0.23, C:0.18, G:0.18, T:0.40
Consensus pattern (80 bp):
GGGTATTTCAATCATTTTACCCTACAGGGGTATTTAGTCATTTTACCCATCGAGGGTATTTCAGT
AATTTTACCCATCGA
Found at i:22617613 original size:27 final size:27
Alignment explanation
Indices: 22617410--22617629 Score: 250
Period size: 27 Copynumber: 8.1 Consensus size: 27
22617400 TATTACGATT
* * *
22617410 ATTTTACCTATCGAGGGT-ATTTCATTA
1 ATTTTACCCATCGAGGGTAATTT-AGTC
* *
22617437 ATTTTACCTATCGAGGGT-ATTTCAATC
1 ATTTTACCCATCGAGGGTAATTT-AGTC
*
22617464 ATTTTACCCATCGAGGGTATTTTAGTC
1 ATTTTACCCATCGAGGGTAATTTAGTC
* * *
22617491 ATTTTACCCATCGAGGGTATTTTGGTA
1 ATTTTACCCATCGAGGGTAATTTAGTC
*
22617518 ATTTTACCCATCGAGGGTAATTCAGTC
1 ATTTTACCCATCGAGGGTAATTTAGTC
*
22617545 ATTTTACCCTTC-AGAGGTAATTTAGTC
1 ATTTTACCCATCGAG-GGTAATTTAGTC
*
22617572 ATTTTACCC-TACGAGGGTAATTTGGTC
1 ATTTTACCCAT-CGAGGGTAATTTAGTC
* *
22617599 ATTTTACCCCTCGAGGGTAATTCAGTC
1 ATTTTACCCATCGAGGGTAATTTAGTC
22617626 ATTT
1 ATTT
22617630 AACAAATATT
Statistics
Matches: 172, Mismatches: 16, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
26 3 0.02
27 163 0.95
28 6 0.03
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.40
Consensus pattern (27 bp):
ATTTTACCCATCGAGGGTAATTTAGTC
Found at i:22625475 original size:159 final size:159
Alignment explanation
Indices: 22625235--22625546 Score: 484
Period size: 159 Copynumber: 2.0 Consensus size: 159
22625225 AAAGATACAT
* * * *
22625235 AATTTAAAACATTATGGTTCTAAAGGACCTAAGTGAATATGTGCATACCATGTTTTAATTACAAG
1 AATTTAAAACATTACGGTTCTAAAAGAACTAAGTGAATATGTGCATACCATGTTTTAAATACAAG
*
22625300 TTTTATATGCTTGATGATAAGAATATA-ACATTGTTTATTTATTGAAATTATCGTACGTAGTTAA
66 TTTTATATGCTTGATGATAAGAATA-ACACATTGTTTATTTATTGAAATTATCATACGTAGTTAA
* *
22625364 AATCGATGCCATTCTATTGAAAGATGTGAG
130 AATCGATGCCAGTCTATCGAAAGATGTGAG
* * *
22625394 AATTTAGAACATTACGGTTCTAAAATAACTAAGTGAATATGTGCATACCATGTTTTAAATA-TAG
1 AATTTAAAACATTACGGTTCTAAAAGAACTAAGTGAATATGTGCATACCATGTTTTAAATACAAG
* *
22625458 TTTTTATATGCTTGATGATGAGAATAACACATTGTTTCTTTATTGAAATTATCATACGTAGTTAA
66 -TTTTATATGCTTGATGATAAGAATAACACATTGTTTATTTATTGAAATTATCATACGTAGTTAA
22625523 AATCGATGCCAGTCTATCGAAAGA
130 AATCGATGCCAGTCTATCGAAAGA
22625547 CAAAGGGAAA
Statistics
Matches: 139, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
158 3 0.02
159 136 0.98
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.37
Consensus pattern (159 bp):
AATTTAAAACATTACGGTTCTAAAAGAACTAAGTGAATATGTGCATACCATGTTTTAAATACAAG
TTTTATATGCTTGATGATAAGAATAACACATTGTTTATTTATTGAAATTATCATACGTAGTTAAA
ATCGATGCCAGTCTATCGAAAGATGTGAG
Found at i:22627310 original size:13 final size:13
Alignment explanation
Indices: 22627292--22627355 Score: 110
Period size: 13 Copynumber: 4.9 Consensus size: 13
22627282 AGTTCTTCAT
22627292 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
22627305 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
* *
22627318 TGTTTTTCAGAAG
1 TGCTTTTGAGAAG
22627331 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
22627344 TGCTTTTGAGAA
1 TGCTTTTGAGAA
22627356 ATTTGAGTGT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 47 1.00
ACGTcount: A:0.23, C:0.08, G:0.28, T:0.41
Consensus pattern (13 bp):
TGCTTTTGAGAAG
Found at i:22627614 original size:8 final size:8
Alignment explanation
Indices: 22627601--22627636 Score: 72
Period size: 8 Copynumber: 4.5 Consensus size: 8
22627591 TAATTAGAAT
22627601 ATATTTAA
1 ATATTTAA
22627609 ATATTTAA
1 ATATTTAA
22627617 ATATTTAA
1 ATATTTAA
22627625 ATATTTAA
1 ATATTTAA
22627633 ATAT
1 ATAT
22627637 AAAAATTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (8 bp):
ATATTTAA
Found at i:22627642 original size:16 final size:16
Alignment explanation
Indices: 22627607--22627642 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
22627597 GAATATATTT
**
22627607 AAATATTTAAATATTT
1 AAATATTTAAATATAA
22627623 AAATATTTAAATATAA
1 AAATATTTAAATATAA
22627639 AAAT
1 AAAT
22627643 TAAATATTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
AAATATTTAAATATAA
Found at i:22630286 original size:32 final size:32
Alignment explanation
Indices: 22630245--22630306 Score: 124
Period size: 32 Copynumber: 1.9 Consensus size: 32
22630235 AAGGTTAACA
22630245 TATTTAATATTTATATATAAATATAGGATAGT
1 TATTTAATATTTATATATAAATATAGGATAGT
22630277 TATTTAATATTTATATATAAATATAGGATA
1 TATTTAATATTTATATATAAATATAGGATA
22630307 ATCATGGGTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (32 bp):
TATTTAATATTTATATATAAATATAGGATAGT
Found at i:22633137 original size:143 final size:143
Alignment explanation
Indices: 22632879--22633167 Score: 517
Period size: 143 Copynumber: 2.0 Consensus size: 143
22632869 TAAATACGTA
22632879 GTTTGTGCAGTAAATGTTTTTATTTATCATATGTTTTGACTAATATATAGCTTGTACAGGTGGAA
1 GTTTGTGCAGTAAATGTTTTTATTTATCATATGTTTTGACTAATATATAGCTTGTACAGGTGGAA
*
22632944 CCACTGGCTGAGTTACGTGGGAGTACCTGACGAGTTGGAAAACATTAGGCTACTGTTAGATCAAT
66 CCACTGGCCGAGTTACGTGGGAGTACCTGACGAGTTGGAAAACATTAGGCTACTGTTAGATCAAT
*
22633009 GCTCGAAACCAAG
131 ACTCGAAACCAAG
22633022 GTTTGTGCAGTAAATGTTTTTATTTATCATATGTTTTGACTAATATATAGCTTGTACAGGTGGAA
1 GTTTGTGCAGTAAATGTTTTTATTTATCATATGTTTTGACTAATATATAGCTTGTACAGGTGGAA
* * *
22633087 CCA-TGGGCCGAGTTACGTGGGAGTACCTGACGATTTGGAAAACGTTAGGCTGCTGTTAGATCAA
66 CCACT-GGCCGAGTTACGTGGGAGTACCTGACGAGTTGGAAAACATTAGGCTACTGTTAGATCAA
22633151 TACTCGAAACCAAG
130 TACTCGAAACCAAG
22633165 GTT
1 GTT
22633168 AATTACCTAT
Statistics
Matches: 140, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
142 1 0.01
143 139 0.99
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (143 bp):
GTTTGTGCAGTAAATGTTTTTATTTATCATATGTTTTGACTAATATATAGCTTGTACAGGTGGAA
CCACTGGCCGAGTTACGTGGGAGTACCTGACGAGTTGGAAAACATTAGGCTACTGTTAGATCAAT
ACTCGAAACCAAG
Found at i:22639513 original size:3 final size:3
Alignment explanation
Indices: 22639505--22639545 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
22639495 GGACTAGATG
22639505 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
22639546 GAAAAAAACA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:22647707 original size:26 final size:26
Alignment explanation
Indices: 22647673--22647733 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
22647663 CCTTAAATAT
* *
22647673 AATTAAAATAT-ATTAAATTATTTAAC
1 AATTTAAATATGATAAAATT-TTTAAC
*
22647699 AATTTAAATATGATAAAATTTTTAAT
1 AATTTAAATATGATAAAATTTTTAAC
22647725 AATATTAAA
1 AAT-TTAAA
22647734 AAAATCAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 18 0.60
27 12 0.40
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (26 bp):
AATTTAAATATGATAAAATTTTTAAC
Found at i:22651393 original size:51 final size:51
Alignment explanation
Indices: 22651313--22651650 Score: 321
Period size: 51 Copynumber: 6.6 Consensus size: 51
22651303 GATGAACACG
*
22651313 TGTGTAGTACTGTGTGAAGGCTACTATGTGTATCGATAAATAATTGTCACA
1 TGTGTAGTACTATGTGAAGGCTACTATGTGTATCGATAAATAATTGTCACA
* * * * * * *
22651364 TGTCTAGTACTAAGTGAAGGCTACAATGTGTACCGAGAAGCT--TTGGTCACG
1 TGTGTAGTACTATGTGAAGGCTACTATGTGTATCGATAA-ATAATT-GTCACA
* * * * *
22651415 TGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACA
1 TGTGTAGTACTATGTGAAGGCTACTATGTGTATCGATAAATAATTGTCACA
* * * *
22651466 TGTGTAGTACTAAGTGAAGGCTACTATGTGTATCGA-AAAGATTTGGTCACG
1 TGTGTAGTACTATGTGAAGGCTACTATGTGTATCGATAAATAATT-GTCACA
* * * *
22651517 TGTGTAGTACTATGTGAAGGCTAGTACGTGAACCG-TAAA-AACTTGATCACA
1 TGTGTAGTACTATGTGAAGGCTACTATGTGTATCGATAAATAA-TTG-TCACA
* * * * *
22651568 TGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAA-ACTTGATCACG
1 TGTGTAGTACTATGTGAAGGCTACTATGTGTATCGATAAATAATTG-TCACA
* *
22651618 TGTGTAGTACTATGTGGAGGCTACTACGTGTAT
1 TGTGTAGTACTATGTGAAGGCTACTATGTGTAT
22651651 TGAATGATAA
Statistics
Matches: 238, Mismatches: 41, Indels: 17
0.80 0.14 0.06
Matches are distributed among these distances:
50 47 0.20
51 189 0.79
52 2 0.01
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.30
Consensus pattern (51 bp):
TGTGTAGTACTATGTGAAGGCTACTATGTGTATCGATAAATAATTGTCACA
Found at i:22651485 original size:102 final size:101
Alignment explanation
Indices: 22651309--22651647 Score: 441
Period size: 102 Copynumber: 3.3 Consensus size: 101
22651299 TATCGATGAA
* * * * *
22651309 CACGTGTGTAGTACTGTGTGAAGGCTACTATGTGTATCGATAAATAATTGTCACATGTCTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATAATGGTCACATGTGTAGTAC
*
22651374 TAAGTGAAGGCTACAATGTGTACCGAGAAGCTTTGGT
66 TAAGTGAAGGCTACTATGTGTACCGA-AAGCTTTGGT
* *
22651411 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATAATGGTCACATGTGTAGTAC
* *
22651476 TAAGTGAAGGCTACTATGTGTATCGAAAAGATTTGGT
66 TAAGTGAAGGCTACTATGTGTACCG-AAAGCTTTGGT
* * *
22651513 CACGTGTGTAGTACTATGTGAAGGCTAGTACGTGAACCG-TAAA-AACTTGATCACATGTGTAGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATAA--TGGTCACATGTGTAGT
* * * * *
22651576 ACTATGTGAAGGCTACTACGTGAACCGTAAAAC-TTGAT
64 ACTAAGTGAAGGCTACTATGTGTACCG-AAAGCTTTGGT
*
22651614 CACGTGTGTAGTACTATGTGGAGGCTACTACGTG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
22651648 TATTGAATGA
Statistics
Matches: 211, Mismatches: 23, Indels: 7
0.88 0.10 0.03
Matches are distributed among these distances:
100 1 0.00
101 40 0.19
102 169 0.80
103 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (101 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATAATGGTCACATGTGTAGTAC
TAAGTGAAGGCTACTATGTGTACCGAAAGCTTTGGT
Found at i:22651572 original size:153 final size:152
Alignment explanation
Indices: 22651304--22651650 Score: 419
Period size: 153 Copynumber: 2.3 Consensus size: 152
22651294 TAAGGTATCG
* * * *
22651304 ATGAACACGTGTGTAGTACTGTGTGAAGGCTACTATGTGTATCGATAAATAATTGTCACATGTCT
1 ATGATCACATGTGTAGTACTATGTGAAGGCTACTATGTGTATCGATAAAGAATTGTCACATGTCT
* * * * * * *
22651369 AGTACTAAGTGAAGGCTACAATGTGTACCGAGAAGCTTTGGTCACGTGTGTAGTACTGTGTGAAG
66 AGTACTAAGTGAAGGCTACAACGTGAACCGAAAAACTTTGATCACATGTGTAGTACTATGTGAAG
* **
22651434 GCTACTACGTGAATCGATAAATG
131 GCTACTACGTGAACCG-TAAAAC
* * * * *
22651457 ATGGTCACATGTGTAGTACTAAGTGAAGGCTACTATGTGTATCGA-AAAGATTTGGTCACGTGTG
1 ATGATCACATGTGTAGTACTATGTGAAGGCTACTATGTGTATCGATAAAGAATT-GTCACATGTC
* **
22651521 TAGTACTATGTGAAGGCTAGTACGTGAACCGTAAAAAC-TTGATCACATGTGTAGTACTATGTGA
65 TAGTACTAAGTGAAGGCTACAACGTGAACCG-AAAAACTTTGATCACATGTGTAGTACTATGTGA
22651585 AGGCTACTACGTGAACCGTAAAAC
129 AGGCTACTACGTGAACCGTAAAAC
* * * *
22651609 TTGATCACGTGTGTAGTACTATGTGGAGGCTACTACGTGTAT
1 ATGATCACATGTGTAGTACTATGTGAAGGCTACTATGTGTAT
22651651 TGAATGATAA
Statistics
Matches: 164, Mismatches: 28, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
152 46 0.28
153 114 0.70
154 4 0.02
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (152 bp):
ATGATCACATGTGTAGTACTATGTGAAGGCTACTATGTGTATCGATAAAGAATTGTCACATGTCT
AGTACTAAGTGAAGGCTACAACGTGAACCGAAAAACTTTGATCACATGTGTAGTACTATGTGAAG
GCTACTACGTGAACCGTAAAAC
Found at i:22653507 original size:23 final size:22
Alignment explanation
Indices: 22653436--22653521 Score: 97
Period size: 21 Copynumber: 4.0 Consensus size: 22
22653426 CCTGATCAGT
22653436 ATACGACACAT-AAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
** *
22653457 A-ACGACACACGAGGTGCCT-A
1 ATACGACACATAAAGTGCCTGA
*
22653477 ATACGACACATAAAGTGTCTGA
1 ATACGACACATAAAGTGCCTGA
*
22653499 GATACGACACATAAAGTGTCTGA
1 -ATACGACACATAAAGTGCCTGA
22653522 TCGGCAAAGC
Statistics
Matches: 55, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
20 10 0.18
21 22 0.40
22 1 0.02
23 22 0.40
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.19
Consensus pattern (22 bp):
ATACGACACATAAAGTGCCTGA
Found at i:22654474 original size:30 final size:28
Alignment explanation
Indices: 22654403--22654485 Score: 78
Period size: 30 Copynumber: 2.9 Consensus size: 28
22654393 ATTTTCCCTC
* **
22654403 TTTCTTTTCTTTCCCTTTTTCTTCCCCTGT
1 TTTCTTTTCTTTCTC-TTTTCTT-TTCTGT
* *
22654433 TTTCGTCTCTTTCTCTGTTTCTTTTCTGT
1 TTTCTTTTCTTTCTCT-TTTCTTTTCTGT
22654462 TCTTCTTTTCTTTCT-TTTTCTTTT
1 T-TTCTTTTCTTTCTCTTTTCTTTT
22654486 TTTTTTGTTT
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
28 8 0.18
29 7 0.16
30 29 0.66
ACGTcount: A:0.00, C:0.27, G:0.05, T:0.69
Consensus pattern (28 bp):
TTTCTTTTCTTTCTCTTTTCTTTTCTGT
Found at i:22654734 original size:30 final size:27
Alignment explanation
Indices: 22654694--22654758 Score: 76
Period size: 30 Copynumber: 2.3 Consensus size: 27
22654684 TTTCCTATAA
* *
22654694 TATATTATTTTAATCTTAATTAATATAATT
1 TATAATATTTTAAT-TTAA-CAATAT-ATT
*
22654724 TATAATATTTTAATTTAACAATATTTT
1 TATAATATTTTAATTTAACAATATATT
22654751 TATAATAT
1 TATAATAT
22654759 AAATCAAGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 10 0.31
28 5 0.16
29 4 0.12
30 13 0.41
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (27 bp):
TATAATATTTTAATTTAACAATATATT
Found at i:22657048 original size:21 final size:20
Alignment explanation
Indices: 22657015--22657054 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
22657005 ATTTTTACGA
22657015 TTTTAAATATAAAATATTAG
1 TTTTAAATATAAAATATTAG
*
22657035 TTTTATATCATAAAATATTA
1 TTTTAAAT-ATAAAATATTA
22657055 AAATTAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (20 bp):
TTTTAAATATAAAATATTAG
Found at i:22657318 original size:49 final size:49
Alignment explanation
Indices: 22657261--22657357 Score: 194
Period size: 49 Copynumber: 2.0 Consensus size: 49
22657251 GATACATGCC
22657261 GTTATCCACTATTCACACCCAAATCCAAGTACCATTGCTGACCAGGAGG
1 GTTATCCACTATTCACACCCAAATCCAAGTACCATTGCTGACCAGGAGG
22657310 GTTATCCACTATTCACACCCAAATCCAAGTACCATTGCTGACCAGGAG
1 GTTATCCACTATTCACACCCAAATCCAAGTACCATTGCTGACCAGGAG
22657358 CCGAGTAAAG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.31, C:0.31, G:0.15, T:0.23
Consensus pattern (49 bp):
GTTATCCACTATTCACACCCAAATCCAAGTACCATTGCTGACCAGGAGG
Found at i:22661181 original size:20 final size:20
Alignment explanation
Indices: 22661158--22661195 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
22661148 AAAAATAGAA
22661158 AAAAATAAG-AAAAATAATGT
1 AAAAA-AAGTAAAAATAATGT
*
22661178 AAAAAAAGTAAAAGTAAT
1 AAAAAAAGTAAAAATAAT
22661196 AAAAAATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.71, C:0.00, G:0.11, T:0.18
Consensus pattern (20 bp):
AAAAAAAGTAAAAATAATGT
Found at i:22664618 original size:30 final size:29
Alignment explanation
Indices: 22664487--22664620 Score: 78
Period size: 30 Copynumber: 4.5 Consensus size: 29
22664477 TTTTTCTTAC
* * *
22664487 CATTTTATAATTAATGTTAACA-TATTTT
1 CATTATATAATTAATGTAAACACGATTTT
* *
22664515 CA-TAGTATAGTTAATGTAAACATACACATTTT
1 CATTA-TATAATTAATGTAAAC--AC-GATTTT
* * * *
22664547 CATAATATAATTGATGTATAA-ATGCTTTCT
1 CATTATATAATTAATGTA-AACACGATTT-T
*
22664577 CA-TAGTTTAATTAATGTAAACACGATTTCT
1 CATTA-TATAATTAATGTAAACACGATTT-T
22664607 CATTATATAATTAA
1 CATTATATAATTAA
22664621 GCTAAAAATC
Statistics
Matches: 79, Mismatches: 16, Indels: 20
0.69 0.14 0.17
Matches are distributed among these distances:
27 1 0.01
28 16 0.20
29 6 0.08
30 33 0.42
31 2 0.03
32 18 0.23
33 3 0.04
ACGTcount: A:0.39, C:0.10, G:0.07, T:0.43
Consensus pattern (29 bp):
CATTATATAATTAATGTAAACACGATTTT
Found at i:22666631 original size:41 final size:41
Alignment explanation
Indices: 22666586--22666666 Score: 144
Period size: 41 Copynumber: 2.0 Consensus size: 41
22666576 ACTGGCACTT
*
22666586 AGCCTGCTAGACATAAAGTCTGAAATGTTTCACCGGCGTCA
1 AGCCTGCTAGACATAAAGTCTAAAATGTTTCACCGGCGTCA
*
22666627 AGCCTGCTAGACTTAAAGTCTAAAATGTTTCACCGGCGTC
1 AGCCTGCTAGACATAAAGTCTAAAATGTTTCACCGGCGTC
22666667 GCGCTAGACT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (41 bp):
AGCCTGCTAGACATAAAGTCTAAAATGTTTCACCGGCGTCA
Found at i:22668369 original size:28 final size:26
Alignment explanation
Indices: 22668336--22668387 Score: 86
Period size: 28 Copynumber: 1.9 Consensus size: 26
22668326 TTTTTAATGT
22668336 TTATTATAACATAATAATATATTATACC
1 TTATTATAACAT-AT-ATATATTATACC
22668364 TTATTATAACATATATATATTATA
1 TTATTATAACATATATATATTATA
22668388 TTAATAATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 10 0.42
27 2 0.08
28 12 0.50
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (26 bp):
TTATTATAACATATATATATTATACC
Found at i:22671092 original size:24 final size:23
Alignment explanation
Indices: 22671065--22671111 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
22671055 CCCTTTGCAT
22671065 GTTTATTTCCTGTTTTTAGTTTTA
1 GTTTATTTCCTGTTTTTA-TTTTA
**
22671089 GTTTATTTTTTGTTTTTATTTTA
1 GTTTATTTCCTGTTTTTATTTTA
22671112 TTTTGGGTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.13, C:0.04, G:0.11, T:0.72
Consensus pattern (23 bp):
GTTTATTTCCTGTTTTTATTTTA
Found at i:22672721 original size:20 final size:20
Alignment explanation
Indices: 22672691--22672728 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
22672681 TATAGATACA
22672691 ATTTTTAATTTTTGTTTAGTT
1 ATTTTTAATTTTT-TTTAGTT
22672712 ATTTTT-ATTTTTTTTAG
1 ATTTTTAATTTTTTTTAG
22672729 GTCATGTATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 5 0.29
20 6 0.35
21 6 0.35
ACGTcount: A:0.18, C:0.00, G:0.08, T:0.74
Consensus pattern (20 bp):
ATTTTTAATTTTTTTTAGTT
Done.