Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 74 of 222
Found at i:22675756 original size:25 final size:28
Alignment explanation
Indices: 22675727--22675778 Score: 83
Period size: 25 Copynumber: 2.0 Consensus size: 28
22675717 TATATTAGTA
22675727 AAGGTTAATATA-GTA-AAT-TAACAAT
1 AAGGTTAATATATGTATAATATAACAAT
22675752 AAGGTTAATATATGTATAATATAACAA
1 AAGGTTAATATATGTATAATATAACAA
22675779 ATTAAAATGC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 12 0.50
26 3 0.12
27 3 0.12
28 6 0.25
ACGTcount: A:0.52, C:0.04, G:0.12, T:0.33
Consensus pattern (28 bp):
AAGGTTAATATATGTATAATATAACAAT
Found at i:22688300 original size:29 final size:26
Alignment explanation
Indices: 22688228--22688300 Score: 65
Period size: 29 Copynumber: 2.5 Consensus size: 26
22688218 ATTATTTAAA
22688228 ATTACTATTAAAATAAATTTAATATTG
1 ATTA-TATTAAAATAAATTTAATATTG
* *
22688255 AATATATTACAATAATAAATATATAATAATTT
1 ATTATATT--AA-AATAAAT-T-TAAT-ATTG
22688287 ATTATATTAAAATA
1 ATTATATTAAAATA
22688301 CAATGAAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
26 4 0.11
27 3 0.08
28 2 0.05
29 11 0.30
30 3 0.08
31 4 0.11
32 10 0.27
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.42
Consensus pattern (26 bp):
ATTATATTAAAATAAATTTAATATTG
Found at i:22696146 original size:49 final size:49
Alignment explanation
Indices: 22696024--22696260 Score: 219
Period size: 49 Copynumber: 4.8 Consensus size: 49
22696014 GATAATAACA
* ** * ** *
22696024 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGATGTTTTTTAAAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGACCTCTAAT-ATCGG
* * * ** *
22696072 TACCAATGCCATATCCCAGATATGGTCTTACATGGAGTTCTAATATCGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGACCTCTAATATCGG
* ** * *
22696121 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTAC-ATGGACCTCTAATATCGG
* ** *
22696171 TGCCAACGCCATGTCCCAGACATGGTC-TACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAT-GGACCTCTAATATCGG
*
22696220 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGACCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGACCTCT
22696261 CATGATCTCA
Statistics
Matches: 156, Mismatches: 28, Indels: 9
0.81 0.15 0.05
Matches are distributed among these distances:
47 2 0.01
48 35 0.22
49 78 0.50
50 41 0.26
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (49 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGACCTCTAATATCGG
Found at i:22696261 original size:49 final size:49
Alignment explanation
Indices: 22696074--22696263 Score: 238
Period size: 49 Copynumber: 3.9 Consensus size: 49
22696064 TTTTAAACTA
* * ** * * *
22696074 CCAATGCCATATCCCAGATATGGTCTTACATGGAGTTCTAATATCGATG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGACCTCTCATCTCGGTG
* **
22696123 CCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTAC-ATGGACCTCTCATCTCGGTG
* *
22696173 CCAACGCCATGTCCCAGACATGGTC-TACATGGGACCTCTCGTCTCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACAT-GGACCTCTCATCTCGGTG
*
22696222 CCAATGCCATGTCCTAGACATGGTCTTACATGGACCTCTCAT
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGACCTCTCAT
22696264 GATCTCAAGG
Statistics
Matches: 120, Mismatches: 18, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
49 79 0.66
50 41 0.34
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.26
Consensus pattern (49 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGACCTCTCATCTCGGTG
Found at i:22697641 original size:21 final size:22
Alignment explanation
Indices: 22697615--22697657 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
22697605 GAATTGAATT
22697615 TAAAGTTATGAAT-TAT-ATATA
1 TAAAGTT-TGAATGTATGATATA
22697636 TAAAGTTTGAATGTATGATATA
1 TAAAGTTTGAATGTATGATATA
22697658 AGTTCTTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 5 0.25
21 10 0.50
22 5 0.25
ACGTcount: A:0.44, C:0.00, G:0.14, T:0.42
Consensus pattern (22 bp):
TAAAGTTTGAATGTATGATATA
Found at i:22697656 original size:20 final size:21
Alignment explanation
Indices: 22697615--22697658 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
22697605 GAATTGAATT
*
22697615 TAAAGTTATGAATTATATATA
1 TAAAGTTATGAATTATAGATA
22697636 TAAAGTT-TGAATGTAT-GATA
1 TAAAGTTATGAAT-TATAGATA
22697656 TAA
1 TAA
22697659 GTTCTTTGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (21 bp):
TAAAGTTATGAATTATAGATA
Found at i:22697791 original size:63 final size:62
Alignment explanation
Indices: 22697652--22697809 Score: 196
Period size: 63 Copynumber: 2.5 Consensus size: 62
22697642 TTGAATGTAT
* *
22697652 GATAT-AAGTTCTTTGAGCTGAATTTAATGTATGAATTTTACATACATATGGTTCGAATATA
1 GATATCAAATTCTTTGAGCTGAATTTAATGTATGAATTTCACATACATATGGTTCGAATATA
* *
22697713 TATATTTCAAGTTC-TTGAGCTGAATTTAATGTATGAATTTCACATACATATGTGGTTCGAATAT
1 GATA--TCAAATTCTTTGAGCTGAATTTAATGTATGAATTTCACATACATA--TGGTTCGAATAT
22697777 A
62 A
*
22697778 GGCTA-CAAATTCTTTGAGCTGAATTTTAATGT
1 -GATATCAAATTCTTTGAGCTGAA-TTTAATGT
22697810 TGTAAATTAT
Statistics
Matches: 84, Mismatches: 5, Indels: 12
0.83 0.05 0.12
Matches are distributed among these distances:
61 3 0.04
63 42 0.50
64 16 0.19
65 21 0.25
66 2 0.02
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.41
Consensus pattern (62 bp):
GATATCAAATTCTTTGAGCTGAATTTAATGTATGAATTTCACATACATATGGTTCGAATATA
Found at i:22698037 original size:41 final size:40
Alignment explanation
Indices: 22697952--22698108 Score: 161
Period size: 41 Copynumber: 3.8 Consensus size: 40
22697942 TTTGAGATTT
* * * * *
22697952 TCAGGCTTAATGCCTAGCAGACTTGATGTCGGTGGATTACA
1 TCAGGCTTTATGCCTAGCAGGCTTG-TGCCGGTGAATTATA
* *
22697993 TCAGGCTTTATGCCTAGCAGGCTCAGTGCCAGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCT-TGTGCCGGTGAATTATA
* * * *
22698034 TCAGACTTTATGTCTAGCAGGCTTTGTGCCGGTGAAATGTA
1 TCAGGCTTTATGCCTAGCAGGC-TTGTGCCGGTGAATTATA
* *
22698075 TCAGGCTTTGTGCCTAGCAGGCTTTATGCCGGTG
1 TCAGGCTTTATGCCTAGCAGGC-TTGTGCCGGTG
22698109 TTTTATACAA
Statistics
Matches: 97, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
41 95 0.98
42 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.31
Consensus pattern (40 bp):
TCAGGCTTTATGCCTAGCAGGCTTGTGCCGGTGAATTATA
Found at i:22698122 original size:41 final size:40
Alignment explanation
Indices: 22697953--22698127 Score: 131
Period size: 41 Copynumber: 4.3 Consensus size: 40
22697943 TTGAGATTTT
* * * * *
22697953 CAGGCTTAATGCCTAGCAGACTTGATGTCGGTGGA-TTACA
1 CAGGCTTTATGCCTAGCAGGCTTTATGCCGGT-GATTTATA
* * *
22697993 TCAGGCTTTATGCCTAGCAGGC-TCAGTGCCAGTGAATTATA
1 -CAGGCTTTATGCCTAGCAGGCTTTA-TGCCGGTGATTTATA
* * * *
22698034 TCAGACTTTATGTCTAGCAGGCTTTGTGCCGGTGAAATGTAT-
1 -CAGGCTTTATGCCTAGCAGGCTTTATGCCGGTG--ATTTATA
* *
22698076 CAGGCTTTGTGCCTAGCAGGCTTTATGCCGGTGTTTTATA
1 CAGGCTTTATGCCTAGCAGGCTTTATGCCGGTGATTTATA
*
22698116 CAAGGCTCTATG
1 C-AGGCTTTATG
22698128 TTCTATAAAT
Statistics
Matches: 106, Mismatches: 21, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
39 4 0.04
40 5 0.05
41 92 0.87
42 1 0.01
43 4 0.04
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (40 bp):
CAGGCTTTATGCCTAGCAGGCTTTATGCCGGTGATTTATA
Found at i:22704902 original size:25 final size:28
Alignment explanation
Indices: 22704874--22704925 Score: 74
Period size: 25 Copynumber: 2.0 Consensus size: 28
22704864 TATATTAGTA
22704874 AAGGTTAACATA-GTA-AAT-TAACAAT
1 AAGGTTAACATATGTATAATATAACAAT
*
22704899 AAGGTTAATATATGTATAATATAACAA
1 AAGGTTAACATATGTATAATATAACAA
22704926 ATTAAAATGC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 11 0.48
26 3 0.13
27 3 0.13
28 6 0.26
ACGTcount: A:0.52, C:0.06, G:0.12, T:0.31
Consensus pattern (28 bp):
AAGGTTAACATATGTATAATATAACAAT
Found at i:22706869 original size:41 final size:41
Alignment explanation
Indices: 22706824--22706968 Score: 263
Period size: 41 Copynumber: 3.5 Consensus size: 41
22706814 GACTTTAAGT
22706824 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
22706865 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
* *
22706906 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGATATAAGC
1 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
*
22706947 CTAGCAGGCTAAGTGCCGGTGA
1 CTAGCAGGCTACGTGCCGGTGA
22706969 ATATGTTAAA
Statistics
Matches: 101, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 101 1.00
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (41 bp):
CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
Found at i:22719937 original size:18 final size:18
Alignment explanation
Indices: 22719908--22719951 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
22719898 TGAGTCATGG
* *
22719908 AAGGAAGATGAAA-ATGA
1 AAGGAGGATGAAACATCA
22719925 AAGCGAGGATGAAACATCA
1 AAG-GAGGATGAAACATCA
22719944 AAGGAGGA
1 AAGGAGGA
22719952 AGACGAGGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 3 0.13
18 14 0.61
19 6 0.26
ACGTcount: A:0.52, C:0.07, G:0.32, T:0.09
Consensus pattern (18 bp):
AAGGAGGATGAAACATCA
Found at i:22720045 original size:25 final size:25
Alignment explanation
Indices: 22719999--22720046 Score: 71
Period size: 24 Copynumber: 1.9 Consensus size: 25
22719989 ATTTCTTGTC
*
22719999 TTTAGTTTTTATTTCTTTTTAGATG
1 TTTAGTTTTTATTTCTTGTTAGATG
22720024 TTTA-TTTTTATTTCTTAGTTAGA
1 TTTAGTTTTTATTTCTT-GTTAGA
22720047 ATTTTGCTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.19, C:0.04, G:0.10, T:0.67
Consensus pattern (25 bp):
TTTAGTTTTTATTTCTTGTTAGATG
Found at i:22728187 original size:44 final size:44
Alignment explanation
Indices: 22728116--22728258 Score: 155
Period size: 45 Copynumber: 3.2 Consensus size: 44
22728106 GATCGAAGTG
* * *
22728116 TGCCATGGTGTCTTTTAATCATGGTCTTATTTATTCTCTTCTTGA
1 TGCCATAGTGTC-TTTAACCATGGTCTTATTTATTCTCTTCGTGA
* *
22728161 TGCCATAGTGTCTTTAACCATGGTCTTATTCATTCTCTATCGTGT
1 TGCCATAGTGTCTTTAACCATGGTCTTATTTATTCTCT-TCGTGA
** *
22728206 TGTAATAGTGTCTTTCAACCATGGTCTT-TTTCATT-TGATTCGTGA
1 TGCCATAGTGTCTTT-AACCATGGTCTTATTT-ATTCT-CTTCGTGA
22728251 TGCCATAG
1 TGCCATAG
22728259 CATCTTTCAG
Statistics
Matches: 82, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
44 24 0.29
45 42 0.51
46 16 0.20
ACGTcount: A:0.18, C:0.19, G:0.17, T:0.46
Consensus pattern (44 bp):
TGCCATAGTGTCTTTAACCATGGTCTTATTTATTCTCTTCGTGA
Found at i:22728296 original size:45 final size:45
Alignment explanation
Indices: 22728247--22728409 Score: 231
Period size: 45 Copynumber: 3.6 Consensus size: 45
22728237 CATTTGATTC
* *
22728247 GTGATGCCATAGCATCTTTCAG-CTATGGTTTTACTCGATAGAATT
1 GTGATGCCATAACATCTTTCAGTC-ATGGTCTTACTCGATAGAATT
* * *
22728292 GTGATGCCATAACGTCTTTTAGTCATGGTCTTGCTCGATAGAATT
1 GTGATGCCATAACATCTTTCAGTCATGGTCTTACTCGATAGAATT
*
22728337 GTGATGCCATAACATCTTTCAGTCATGGTCTTACTCGATAGAATC
1 GTGATGCCATAACATCTTTCAGTCATGGTCTTACTCGATAGAATT
* *
22728382 GTGATGCCATAACGTCTTTCGGT-ATGGT
1 GTGATGCCATAACATCTTTCAGTCATGGT
22728410 GCCATAGTGT
Statistics
Matches: 106, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
44 5 0.05
45 100 0.94
46 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.21, T:0.36
Consensus pattern (45 bp):
GTGATGCCATAACATCTTTCAGTCATGGTCTTACTCGATAGAATT
Found at i:22728309 original size:90 final size:90
Alignment explanation
Indices: 22728215--22728401 Score: 245
Period size: 90 Copynumber: 2.1 Consensus size: 90
22728205 TTGTAATAGT
** * * *
22728215 GTCTTTCAACCATGGTCTTTTTC-ATTTG-ATTCGTGATGCCATAGCATCTTTCAG-CTATGGTT
1 GTCTTTCAACCATGGTCTTGCTCGA-TAGAATT-GTGATGCCATAACATCTTTCAGTC-ATGGTC
*
22728277 TTACTCGATAGAATTGTGATGCCATAAC
63 TTACTCGATAGAATCGTGATGCCATAAC
* **
22728305 GTCTTTTAGTCATGGTCTTGCTCGATAGAATTGTGATGCCATAACATCTTTCAGTCATGGTCTTA
1 GTCTTTCAACCATGGTCTTGCTCGATAGAATTGTGATGCCATAACATCTTTCAGTCATGGTCTTA
22728370 CTCGATAGAATCGTGATGCCATAAC
66 CTCGATAGAATCGTGATGCCATAAC
22728395 GTCTTTC
1 GTCTTTC
22728402 GGTATGGTGC
Statistics
Matches: 84, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
90 79 0.94
91 5 0.06
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (90 bp):
GTCTTTCAACCATGGTCTTGCTCGATAGAATTGTGATGCCATAACATCTTTCAGTCATGGTCTTA
CTCGATAGAATCGTGATGCCATAAC
Found at i:22729279 original size:56 final size:56
Alignment explanation
Indices: 22729193--22729312 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
22729183 ACAAGGGATG
22729193 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
22729249 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
22729305 ATGGGCAA
1 ATGGGCAA
22729313 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:22730548 original size:39 final size:40
Alignment explanation
Indices: 22730440--22730624 Score: 182
Period size: 40 Copynumber: 4.7 Consensus size: 40
22730430 TCGAATGATG
* * * *
22730440 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAATGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
22730479 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * * *
22730520 TCCGGGCTAAG-CCTGAAGGCATTGGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
22730559 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
22730598 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
22730625 AACGAGTAGC
Statistics
Matches: 119, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
39 33 0.28
40 76 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:22730646 original size:79 final size:79
Alignment explanation
Indices: 22730493--22730657 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
22730483 GGACTAAGAT
* * ** *
22730493 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCTGAAGGCATTGGTGCGAGTTATTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
22730558 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
22730572 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
22730635 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
22730651 CCGAAGG
1 CCGAAGG
22730658 TACGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.67
80 22 0.31
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:22737181 original size:56 final size:56
Alignment explanation
Indices: 22737095--22737214 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
22737085 ACAAGGGATG
22737095 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
22737151 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
22737207 ATGGGCAA
1 ATGGGCAA
22737215 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:22738479 original size:79 final size:80
Alignment explanation
Indices: 22738343--22738567 Score: 253
Period size: 79 Copynumber: 2.8 Consensus size: 80
22738333 TCGAATGATG
* * * * *
22738343 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA--AGTGACCATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTG-G-TACGAGTTACTATAACCGGGCTAAG-TCCCGAAGGCA
*
22738405 TTTGTGCGAGATACTAAT
63 TTTGTGCGAGATACTAAA
* * * *
22738423 TCCGGGCTAAG-CCTGAAGGCATTGGTGCGAGTTATTA-AATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTACGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
*
22738486 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* * *
22738502 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTACGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
22738567 G
66 G
22738568 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
77 1 0.01
78 3 0.02
79 59 0.49
80 56 0.46
81 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTACGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:22738574 original size:40 final size:40
Alignment explanation
Indices: 22738343--22738567 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
22738333 TCGAATGATG
* * * *
22738343 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
22738383 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
22738423 TCCGGGCTAAG-CCTGAAGGCATTGGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
22738462 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
22738502 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
22738543 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
22738568 AACGAGTAGC
Statistics
Matches: 160, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
39 32 0.20
40 118 0.74
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:22738581 original size:40 final size:40
Alignment explanation
Indices: 22738344--22738600 Score: 197
Period size: 40 Copynumber: 6.5 Consensus size: 40
22738334 CGAATGATGT
* * * * * *
22738344 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTAC-GAGTTACTATAA
** * * *
22738384 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTACGAGTTACTATA-A
* * * * *
22738424 CCGGGCTAAG-CCTGAAGGCATTGGTGCGAGTTATTA-AA
1 CCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTATAA
*
22738462 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
1 -CCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTATAA
22738502 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTATAA
* * * *
22738543 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTA-CTATAA
* *
22738583 CC-GGTTAAATTCCGAAGG
1 CCGGGTTAAGTCCCGAAGG
22738601 TACGTGATTT
Statistics
Matches: 185, Mismatches: 24, Indels: 17
0.82 0.11 0.08
Matches are distributed among these distances:
39 46 0.25
40 129 0.70
41 10 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTATAA
Found at i:22738589 original size:119 final size:119
Alignment explanation
Indices: 22738343--22738600 Score: 265
Period size: 119 Copynumber: 2.2 Consensus size: 119
22738333 TCGAATGATG
* *
22738343 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* * * ** *
22738408 GTGCGAGATACTAATTCCGGGCTAAGCCTGAAGGCATTGGTGCGAGTTATTAAA
66 GTACGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * **
22738462 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
22738525 TTGTACGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTACGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
22738582 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
22738601 TACGTGATTT
Statistics
Matches: 115, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
118 3 0.03
119 83 0.72
120 29 0.25
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTACGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:22748249 original size:23 final size:23
Alignment explanation
Indices: 22748223--22748278 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
22748213 GATTAAGATC
22748223 GCACCGAAGTGCAAG-GAACAGGA
1 GCACCGAAGTGCAAGAG-ACAGGA
*
22748246 GCACTGAAGTGCAAGAGACAGGA
1 GCACCGAAGTGCAAGAGACAGGA
* *
22748269 GTACCAAAGT
1 GCACCGAAGT
22748279 ATAAATCAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 27 0.96
24 1 0.04
ACGTcount: A:0.39, C:0.20, G:0.32, T:0.09
Consensus pattern (23 bp):
GCACCGAAGTGCAAGAGACAGGA
Found at i:22759112 original size:22 final size:22
Alignment explanation
Indices: 22759087--22759142 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
22759077 CAAGGGAGCC
22759087 TTGTCTCGAGACA-ATCAAAAAA
1 TTGTCTCGAGACATAT-AAAAAA
* **
22759109 TTGTCTCAAGACATATAGCAAA
1 TTGTCTCGAGACATATAAAAAA
22759131 TTGTCTCGAGAC
1 TTGTCTCGAGAC
22759143 CTTAGGCTCC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 27 0.93
23 2 0.07
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.27
Consensus pattern (22 bp):
TTGTCTCGAGACATATAAAAAA
Found at i:22767792 original size:23 final size:23
Alignment explanation
Indices: 22767748--22767793 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
22767738 TCGTGTTGTG
* *
22767748 GTGACGTCGTATGTCTCCTCGTC
1 GTGACATCGTATGTCGCCTCGTC
* *
22767771 GTGACATCTTATGTCGCGTCGTC
1 GTGACATCGTATGTCGCCTCGTC
22767794 AGGACGTCAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.11, C:0.28, G:0.26, T:0.35
Consensus pattern (23 bp):
GTGACATCGTATGTCGCCTCGTC
Found at i:22769279 original size:40 final size:38
Alignment explanation
Indices: 22769235--22769332 Score: 99
Period size: 40 Copynumber: 2.4 Consensus size: 38
22769225 AATATTTAAT
* *
22769235 TATTTTTAAAATTTTTAAAA-ATTCAAAAATATTATAAAAA
1 TATTTTTAAAA--ATTAAAATATTAAAAAATATTA-AAAAA
22769275 TATTTTTAAAAATTAAAATTATTAAAAAATATTAAAAAA
1 TATTTTTAAAAATTAAAA-TATTAAAAAATATTAAAAAA
*
22769314 TTAAAATTTTAAAAATTAA
1 -T--ATTTTTAAAAATTAA
22769333 TTAAATGTTG
Statistics
Matches: 50, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
38 6 0.12
39 5 0.10
40 25 0.50
42 14 0.28
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (38 bp):
TATTTTTAAAAATTAAAATATTAAAAAATATTAAAAAA
Found at i:22769283 original size:31 final size:29
Alignment explanation
Indices: 22769245--22769328 Score: 102
Period size: 31 Copynumber: 2.9 Consensus size: 29
22769235 TATTTTTAAA
22769245 ATTTTTAAAAATTCAAAAATATTATAAAAAT
1 ATTTTTAAAAATT-AAAAATATTA-AAAAAT
*
22769276 ATTTTTAAAAATTAAAATTATTAAAAAAT
1 ATTTTTAAAAATTAAAAATATTAAAAAAT
* *
22769305 A--TTAAAAAATT-AAAATTTTAAAAA
1 ATTTTTAAAAATTAAAAATATTAAAAA
22769329 TTAATTAAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 11 0.22
27 9 0.18
29 7 0.14
30 9 0.18
31 13 0.27
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (29 bp):
ATTTTTAAAAATTAAAAATATTAAAAAAT
Found at i:22769307 original size:10 final size:10
Alignment explanation
Indices: 22769259--22769314 Score: 53
Period size: 10 Copynumber: 5.6 Consensus size: 10
22769249 TTAAAAATTC
22769259 AAAAATATTA
1 AAAAATATTA
*
22769269 TAAAAATATTTT
1 -AAAAATA-TTA
*
22769281 TAAAA-ATT-
1 AAAAATATTA
*
22769289 AAAATTATTA
1 AAAAATATTA
22769299 AAAAATATTA
1 AAAAATATTA
22769309 AAAAAT
1 AAAAAT
22769315 TAAAATTTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
8 3 0.08
9 5 0.14
10 16 0.43
11 11 0.30
12 2 0.05
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (10 bp):
AAAAATATTA
Found at i:22769312 original size:27 final size:27
Alignment explanation
Indices: 22769242--22769337 Score: 95
Period size: 27 Copynumber: 3.4 Consensus size: 27
22769232 AATTATTTTT
* * *
22769242 AAAATTTTTAAAAATTCAAAAATATTATA
1 AAAATATTAAAAAATT-AAAATTATTA-A
*
22769271 AAAATATTTTTAAAAATTAAAATTATTAA
1 AAAATA--TTAAAAAATTAAAATTATTAA
22769300 AAAATATTAAAAAATTAAAATT-TTAA
1 AAAATATTAAAAAATTAAAATTATTAA
*
22769326 AAATTAATTAAA
1 AAAAT-ATTAAA
22769338 TGTTGATATA
Statistics
Matches: 60, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
26 8 0.13
27 21 0.35
29 12 0.20
30 9 0.15
31 10 0.17
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (27 bp):
AAAATATTAAAAAATTAAAATTATTAA
Found at i:22770387 original size:18 final size:18
Alignment explanation
Indices: 22770364--22770401 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
22770354 TAAAATTCAA
22770364 TAAATTTT-ATAAAAATAT
1 TAAATTTTAATAAAAA-AT
22770382 TAAATTTTAATAAAAAAT
1 TAAATTTTAATAAAAAAT
22770400 TA
1 TA
22770402 TAAAAATCGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
TAAATTTTAATAAAAAAT
Found at i:22770408 original size:9 final size:9
Alignment explanation
Indices: 22770394--22770462 Score: 57
Period size: 9 Copynumber: 7.4 Consensus size: 9
22770384 AATTTTAATA
22770394 AAAAATTAT
1 AAAAATTAT
**
22770403 AAAAATCGT
1 AAAAATTAT
*
22770412 AAAAAATAT
1 AAAAATTAT
*
22770421 AAAAATTGT
1 AAAAATTAT
* *
22770430 AAAATTTAG
1 AAAAATTAT
*
22770439 AAAAATCATT
1 AAAAATTA-T
22770449 AAAAATATAT
1 AAAAAT-TAT
22770459 AAAA
1 AAAA
22770463 TGCATCAAAA
Statistics
Matches: 44, Mismatches: 14, Indels: 3
0.72 0.23 0.05
Matches are distributed among these distances:
9 32 0.73
10 11 0.25
11 1 0.02
ACGTcount: A:0.65, C:0.03, G:0.04, T:0.28
Consensus pattern (9 bp):
AAAAATTAT
Found at i:22770415 original size:18 final size:18
Alignment explanation
Indices: 22770394--22770462 Score: 75
Period size: 18 Copynumber: 3.7 Consensus size: 18
22770384 AATTTTAATA
22770394 AAAAATTATAAAAATCGT
1 AAAAATTATAAAAATCGT
* *
22770412 AAAAAATATAAAAATTGT
1 AAAAATTATAAAAATCGT
* * *
22770430 AAAATTTAGAAAAATCATT
1 AAAAATTATAAAAATC-GT
22770449 AAAAATATATAAAA
1 AAAAAT-TATAAAA
22770463 TGCATCAAAA
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
18 28 0.70
19 6 0.15
20 6 0.15
ACGTcount: A:0.65, C:0.03, G:0.04, T:0.28
Consensus pattern (18 bp):
AAAAATTATAAAAATCGT
Found at i:22770770 original size:19 final size:18
Alignment explanation
Indices: 22770748--22770809 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 18
22770738 TGTCTTTATA
22770748 TTTTATAATCTTTTACAAT
1 TTTTATAAT-TTTTACAAT
*
22770767 TTTTATAAAGTTTTACAATAT
1 TTTTAT-AATTTTTAC-A-AT
* *
22770788 TTTTATGATTTTTATAAT
1 TTTTATAATTTTTACAAT
22770806 TTTT
1 TTTT
22770810 TTTCTAATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
18 6 0.17
19 13 0.36
20 9 0.25
21 8 0.22
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.61
Consensus pattern (18 bp):
TTTTATAATTTTTACAAT
Found at i:22770800 original size:9 final size:9
Alignment explanation
Indices: 22770748--22770809 Score: 52
Period size: 9 Copynumber: 6.4 Consensus size: 9
22770738 TGTCTTTATA
22770748 TTTTATAAT
1 TTTTATAAT
*
22770757 CTTTTACAAT
1 -TTTTATAAT
*
22770767 TTTTATAAAG
1 TTTTAT-AAT
*
22770777 TTTTACAATAT
1 TTTTA-TA-AT
*
22770788 TTTTATGAT
1 TTTTATAAT
22770797 TTTTATAAT
1 TTTTATAAT
22770806 TTTT
1 TTTT
22770810 TTTCTAATTT
Statistics
Matches: 41, Mismatches: 8, Indels: 7
0.73 0.14 0.12
Matches are distributed among these distances:
9 19 0.46
10 16 0.39
11 6 0.15
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.61
Consensus pattern (9 bp):
TTTTATAAT
Found at i:22781459 original size:9 final size:9
Alignment explanation
Indices: 22781445--22781491 Score: 51
Period size: 9 Copynumber: 5.1 Consensus size: 9
22781435 TATTCTAATC
22781445 TATTTTTTA
1 TATTTTTTA
22781454 TATTTTTTA
1 TATTTTTTA
*
22781463 CATTATTTTA
1 TATT-TTTTA
22781473 TATTATTTT-
1 TATT-TTTTA
*
22781482 TATTATTTA
1 TATTTTTTA
22781491 T
1 T
22781492 TAATAAAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
8 3 0.09
9 17 0.52
10 13 0.39
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (9 bp):
TATTTTTTA
Found at i:22781486 original size:19 final size:19
Alignment explanation
Indices: 22781445--22781489 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
22781435 TATTCTAATC
22781445 TATT-TTTTATATTTTTTA
1 TATTATTTTATATTTTTTA
*
22781463 CATTATTTTATATTATTTT-
1 TATTATTTTATATT-TTTTA
22781482 TATTATTT
1 TATTATTT
22781490 ATTAATAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 3 0.13
19 16 0.70
20 4 0.17
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (19 bp):
TATTATTTTATATTTTTTA
Found at i:22810296 original size:19 final size:19
Alignment explanation
Indices: 22810274--22810314 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
22810264 TGGTTTTTAA
22810274 TTTTTCCATCTTTTCTTTT
1 TTTTTCCATCTTTTCTTTT
**
22810293 TTTTTCTTTCTTTTCTTTT
1 TTTTTCCATCTTTTCTTTT
22810312 TTT
1 TTT
22810315 CATCTTTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.80
Consensus pattern (19 bp):
TTTTTCCATCTTTTCTTTT
Found at i:22817862 original size:47 final size:47
Alignment explanation
Indices: 22817801--22817890 Score: 119
Period size: 47 Copynumber: 1.9 Consensus size: 47
22817791 GAACATGATC
* * *
22817801 TTTAACGGTGTTTTTTCTACAAACGTCGCTAA-AAACATGGTCTTTAG
1 TTTAACGGCGTTTTTT-TACAAACGCCACTAATAAACATGGTCTTTAG
* *
22817848 TTTAGCGGCGTTTTTTTACAAACGCCACTAATGAACATGGTCT
1 TTTAACGGCGTTTTTTTACAAACGCCACTAATAAACATGGTCT
22817891 ATAGCGGTGT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
46 13 0.35
47 24 0.65
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.37
Consensus pattern (47 bp):
TTTAACGGCGTTTTTTTACAAACGCCACTAATAAACATGGTCTTTAG
Found at i:22817905 original size:42 final size:43
Alignment explanation
Indices: 22817782--22817987 Score: 177
Period size: 42 Copynumber: 4.7 Consensus size: 43
22817772 TCATAAAAAT
* *
22817782 GCCACTAAAGAACATGATCTTTAACGGTGTTTTTTCTACAAAC
1 GCCACTAAAGAACATGATCTATAGCGGTGTTTTTTCTACAAAC
* * * *
22817825 GTCGCTAAA-AACATGGTCTTTAGTTTAGCGGCGTTTTTT-TACAAAC
1 GCCACTAAAGAACATGATC--TA---TAGCGGTGTTTTTTCTACAAAC
* * *
22817871 GCCACTAATGAACATGGTCTATAGCGGTGTTTTTT-TACAAAT
1 GCCACTAAAGAACATGATCTATAGCGGTGTTTTTTCTACAAAC
** * *
22817913 GCTGCTAAAGAACATGATCTTTAGCAGCT-TTTTTTCTACAAAC
1 GCCACTAAAGAACATGATCTATAGC-GGTGTTTTTTCTACAAAC
* * * *
22817956 GCCACTAAAGATCATGTTTTATAGCGGCGTTT
1 GCCACTAAAGAACATGATCTATAGCGGTGTTT
22817988 GTAGGAAAAG
Statistics
Matches: 128, Mismatches: 26, Indels: 18
0.74 0.15 0.10
Matches are distributed among these distances:
42 54 0.42
43 37 0.29
44 1 0.01
45 2 0.02
46 13 0.10
47 21 0.16
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (43 bp):
GCCACTAAAGAACATGATCTATAGCGGTGTTTTTTCTACAAAC
Found at i:22817979 original size:85 final size:85
Alignment explanation
Indices: 22817848--22818023 Score: 212
Period size: 85 Copynumber: 2.1 Consensus size: 85
22817838 TGGTCTTTAG
* * * ***
22817848 TTTAGCGGCGTTTTTTTACAAACGCCACTAATGAACATGGTCTATAGCGGTGTTT-TTTTACAAA
1 TTTAGCAGCGTTTTTTTACAAACGCCACTAAAGAACATGGTCTATAGCGGCGTTTGTAGGA-AAA
*
22817912 -TGCTGCTAAAGAACATGATC
65 GTGCCGCTAAAGAACATGATC
* * * *
22817932 TTTAGCAGCTTTTTTTCTACAAACGCCACTAAAGATCATGTTTTATAGCGGCGTTTGTAGGAAAA
1 TTTAGCAGCGTTTTTT-TACAAACGCCACTAAAGAACATGGTCTATAGCGGCGTTTGTAGGAAAA
*
22817997 GTGCCGCTAAAGACCATGATC
65 GTGCCGCTAAAGAACATGATC
22818018 TTTAGC
1 TTTAGC
22818024 GGGGTTTGTG
Statistics
Matches: 77, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
84 14 0.18
85 37 0.48
86 26 0.34
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (85 bp):
TTTAGCAGCGTTTTTTTACAAACGCCACTAAAGAACATGGTCTATAGCGGCGTTTGTAGGAAAAG
TGCCGCTAAAGAACATGATC
Found at i:22818039 original size:43 final size:42
Alignment explanation
Indices: 22817960--22818043 Score: 100
Period size: 43 Copynumber: 2.0 Consensus size: 42
22817950 ACAAACGCCA
* *
22817960 CTAAAGATCATGTTTTATAGCGGCGTTTGTAGGAAAAGTGCCG
1 CTAAAGACCATGTCTTATAGCGGCGTTTGTAGGAAAA-TGCCG
*
22818003 CTAAAGACCATGATCTT-TAGCGGGGTTTGT-GAGAAAATGCC
1 CTAAAGACCATG-TCTTATAGCGGCGTTTGTAG-GAAAATGCC
22818044 ATTAACTTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
42 5 0.14
43 28 0.78
44 3 0.08
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (42 bp):
CTAAAGACCATGTCTTATAGCGGCGTTTGTAGGAAAATGCCG
Found at i:22829210 original size:6 final size:7
Alignment explanation
Indices: 22829192--22829218 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
22829182 TAGTGATTCC
22829192 TAAAAAT
1 TAAAAAT
22829199 TAAAAAT
1 TAAAAAT
22829206 TAAAAAT
1 TAAAAAT
22829213 TAAAAA
1 TAAAAA
22829219 AAACCTTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (7 bp):
TAAAAAT
Found at i:22829573 original size:41 final size:40
Alignment explanation
Indices: 22829528--22829658 Score: 147
Period size: 40 Copynumber: 3.2 Consensus size: 40
22829518 CAAAAGGTCA
* *
22829528 AGCATTAGCGGCG-TTTCTAAAACAAACGTCGCTATAGGTTG
1 AGCATTAGCGGCGCTTT-TAAAA-AAACGCCGCTATAGATTG
* ** * *
22829569 AGCATTAGCTGCGCTTTTTGAAAAACGCCACTATAGATCG
1 AGCATTAGCGGCGCTTTTAAAAAAACGCCGCTATAGATTG
* * *
22829609 AGCATTAGCAGCGCTTTTCAAAAAATGCCGCTATAGATTG
1 AGCATTAGCGGCGCTTTTAAAAAAACGCCGCTATAGATTG
22829649 AGCATTAGCG
1 AGCATTAGCG
22829659 ACACTTTTTG
Statistics
Matches: 75, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
40 57 0.76
41 15 0.20
42 3 0.04
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.27
Consensus pattern (40 bp):
AGCATTAGCGGCGCTTTTAAAAAAACGCCGCTATAGATTG
Found at i:22829603 original size:40 final size:39
Alignment explanation
Indices: 22829559--22829674 Score: 133
Period size: 40 Copynumber: 2.9 Consensus size: 39
22829549 ACAAACGTCG
*
22829559 CTATAGGTTGAGCATTAGCTGCGCTTTTTGAAAAACGCCA
1 CTATAGATTGAGCATTAGC-GCGCTTTTTGAAAAACGCCA
* ** * *
22829599 CTATAGATCGAGCATTAGCAGCGCTTTTCAAAAAATGCCG
1 CTATAGATTGAGCATTAGC-GCGCTTTTTGAAAAACGCCA
* *
22829639 CTATAGATTGAGCATTAGCGACACTTTTTGGAAAAC
1 CTATAGATTGAGCATTAGCG-CGCTTTTTGAAAAAC
22829675 ACCGCAAAAA
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
39 1 0.02
40 61 0.98
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (39 bp):
CTATAGATTGAGCATTAGCGCGCTTTTTGAAAAACGCCA
Found at i:22829772 original size:40 final size:40
Alignment explanation
Indices: 22829713--22829801 Score: 117
Period size: 40 Copynumber: 2.2 Consensus size: 40
22829703 AGCTTTAGTG
* * * *
22829713 GCATTAGCGGCGCTTTTTAAAAATCG-CAGCAATAGATCGA
1 GCATTAGCGACGATATTTAAAAAACGCCA-CAATAGATCGA
*
22829753 GCATTAGCGACGATATTTAAAAAACGCCACTATAGATCGA
1 GCATTAGCGACGATATTTAAAAAACGCCACAATAGATCGA
22829793 GCATTAGCG
1 GCATTAGCG
22829802 GCACTTTTTG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
40 41 0.95
41 2 0.05
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (40 bp):
GCATTAGCGACGATATTTAAAAAACGCCACAATAGATCGA
Found at i:22829828 original size:143 final size:145
Alignment explanation
Indices: 22829570--22830152 Score: 459
Period size: 157 Copynumber: 3.9 Consensus size: 145
22829560 TATAGGTTGA
* * * *
22829570 GCATTAGCTGCGCTTTTTGAAAAA-CGCCA-CTATAGATCGAGCATTAGC-AGCGCTTTTCAAAA
1 GCATTAGCAGCGCTTTTTAAAAAATCG-CAGCAATAGATCGAGCATTAGCGA-CGATTTT-AAAA
* * * * **
22829632 AATGCCGCTATAGATTGAGCATTAGCGACACTTTTTGGAAAACACCGCAAAAAAGTTGAGCAAAA
63 AACGCCACTATAGATCGAGCATTAGCGGCACTTTTTGGAAAATGCCGCAAAAAAGTTGAGCAAAA
22829697 CA-AG-TGAGCTTTAGTG
128 CATAGTTGAGCTTTAGTG
*
22829713 GCATTAGCGGCGCTTTTT-AAAAATCGCAGCAATAGATCGAGCATTAGCGACGATATTTAAAAAA
1 GCATTAGCAGCGCTTTTTAAAAAATCGCAGCAATAGATCGAGCATTAGCGACGAT-TTTAAAAAA
22829777 CGCCACTATAGATCGAGCATTAGCGGCACTTTTTGGAAAATGCCGCAAAAAAGTTGAGCAAAATG
65 CGCCACTATAGATCGAGCATTAGCGGCACTTTTTGGAAAATGCCGCAAAAAAGTTGAGC-AAA--
*
22829842 ACATCGTTTGTTGTTGAGCTTTAGTG
127 ACA-------TAGTTGAGCTTTAGTG
* * * * * *
22829868 GCATTAGCAGTGCTTTTTAAAAAAT-GCTGCAATAAATCGAGAATTAGCGGCAC-TTTGTTGAAA
1 GCATTAGCAGCGCTTTTTAAAAAATCGCAGCAATAGATCGAGCATTAGC-G-ACGATT-TTAAAA
* * * *
22829931 AACGCCTCTATAGATCGAGCATTAGCGGCACTTTTCGAAAAAATGCCACAAAAAAGTTGAGCAAA
63 AACGCCACTATAGATCGAGCATTAGCGGCACTTTTTG-GAAAATGCCGCAAAAAAGTTGAGCAAA
*
22829996 ACGACGTCGTTTGTTGTTGAGCTTTAGTG
127 AC-A---------TAGTTGAGCTTTAGTG
* * * * * * * *
22830025 GCATTAGCTGTGCTTTTTTAAAAAA-CGTC-GAAATAGATTGAGAATTAGCGGCGCTTGTTGAAA
1 GCATTAGCAGCGC-TTTTTAAAAAATCG-CAGCAATAGATCGAGCATTAGCGACGATT-TTAAAA
* * * * * ** *
22830088 AATGCCGCTATAGATCGAGCATTAGTGGCGCTTTTTGTAAAACACCGTAAAAAAGTTGAG-AAAA
63 AACGCCACTATAGATCGAGCATTAGCGGCACTTTTTGGAAAATGCCGCAAAAAAGTTGAGCAAAA
22830152 C
128 C
22830153 GACCTCGTTT
Statistics
Matches: 375, Mismatches: 37, Indels: 44
0.82 0.08 0.10
Matches are distributed among these distances:
142 7 0.02
143 99 0.26
144 7 0.02
146 3 0.01
154 3 0.01
155 55 0.15
156 70 0.19
157 101 0.27
158 29 0.08
159 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (145 bp):
GCATTAGCAGCGCTTTTTAAAAAATCGCAGCAATAGATCGAGCATTAGCGACGATTTTAAAAAAC
GCCACTATAGATCGAGCATTAGCGGCACTTTTTGGAAAATGCCGCAAAAAAGTTGAGCAAAACAT
AGTTGAGCTTTAGTG
Found at i:22830026 original size:157 final size:157
Alignment explanation
Indices: 22829701--22830187 Score: 614
Period size: 157 Copynumber: 3.1 Consensus size: 157
22829691 GCAAAACAAG
* * * * *
22829701 TGAGCTTTAGTGGCATTAGCGGCGCTTTTT-AAAAATCGCAGCAATAGATCGAGCATTAGCGACG
1 TGAGCTTTAGTGGCATTAGCAGTGCTTTTTAAAAAAT-GCTGCAATAGATCGAGAATTAGCGGC-
* * *
22829765 A-TAT-TTAAAAAACGCCACTATAGATCGAGCATTAGCGGCACTTTTTG-GAAAATGCCGCAAAA
64 ACTTTGTTGAAAAACGCCACTATAGATCGAGCATTAGCGGCACTTTTTGAAAAAATGCCGCAAAA
*
22829827 AAGTTGAGCAAAATGACATCGTTTGTTGT
129 AAGTTGAGCAAAACGACATCGTTTGTTGT
*
22829856 TGAGCTTTAGTGGCATTAGCAGTGCTTTTTAAAAAATGCTGCAATAAATCGAGAATTAGCGGCAC
1 TGAGCTTTAGTGGCATTAGCAGTGCTTTTTAAAAAATGCTGCAATAGATCGAGAATTAGCGGCAC
* * *
22829921 TTTGTTGAAAAACGCCTCTATAGATCGAGCATTAGCGGCACTTTTCGAAAAAATGCCACAAAAAA
66 TTTGTTGAAAAACGCCACTATAGATCGAGCATTAGCGGCACTTTTTGAAAAAATGCCGCAAAAAA
*
22829986 GTTGAGCAAAACGACGTCGTTTGTTGT
131 GTTGAGCAAAACGACATCGTTTGTTGT
* * * *
22830013 TGAGCTTTAGTGGCATTAGCTGTGCTTTTTTAAAAAACG-TCGAAATAGATTGAGAATTAGCGGC
1 TGAGCTTTAGTGGCATTAGCAGTGC-TTTTTAAAAAATGCT-GCAATAGATCGAGAATTAGCGGC
* * * * * * *
22830077 GC-TTGTTGAAAAATGCCGCTATAGATCGAGCATTAGTGGCGCTTTTTGTAAAACA--CCGTAAA
64 ACTTTGTTGAAAAACGCCACTATAGATCGAGCATTAGCGGCACTTTTTG-AAAAAATGCCGCAAA
* *
22830139 AAAGTTGAG-AAAACGACCTCGTTTGTTCT
128 AAAGTTGAGCAAAACGACATCGTTTGTTGT
*
22830168 CGAGCTTTAGTGGCATTAGC
1 TGAGCTTTAGTGGCATTAGC
22830188 GTCATTTTTA
Statistics
Matches: 294, Mismatches: 31, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
154 1 0.00
155 89 0.30
156 60 0.20
157 106 0.36
158 38 0.13
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.29
Consensus pattern (157 bp):
TGAGCTTTAGTGGCATTAGCAGTGCTTTTTAAAAAATGCTGCAATAGATCGAGAATTAGCGGCAC
TTTGTTGAAAAACGCCACTATAGATCGAGCATTAGCGGCACTTTTTGAAAAAATGCCGCAAAAAA
GTTGAGCAAAACGACATCGTTTGTTGT
Found at i:22830239 original size:7 final size:7
Alignment explanation
Indices: 22830227--22830287 Score: 50
Period size: 7 Copynumber: 8.6 Consensus size: 7
22830217 ATCATTTTAT
22830227 TTTAGGG
1 TTTAGGG
22830234 TTTAGGG
1 TTTAGGG
***
22830241 TTTATTA
1 TTTAGGG
*
22830248 TTTAAGG
1 TTTAGGG
**
22830255 TTTAATG
1 TTTAGGG
*
22830262 TTTATGG
1 TTTAGGG
22830269 TTTAGGG
1 TTTAGGG
22830276 TTTTAGGG
1 -TTTAGGG
22830284 TTTA
1 TTTA
22830288 TGATATAATG
Statistics
Matches: 43, Mismatches: 10, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
7 36 0.84
8 7 0.16
ACGTcount: A:0.20, C:0.00, G:0.28, T:0.52
Consensus pattern (7 bp):
TTTAGGG
Found at i:22830256 original size:21 final size:21
Alignment explanation
Indices: 22830227--22830291 Score: 76
Period size: 21 Copynumber: 3.0 Consensus size: 21
22830217 ATCATTTTAT
*
22830227 TTTAGGGTTTAGGGTTTATTA
1 TTTAGGGTTTAGGGTTTATGA
* ** *
22830248 TTTAAGGTTTAATGTTTATGG
1 TTTAGGGTTTAGGGTTTATGA
22830269 TTTAGGGTTTTAGGGTTTATGA
1 TTTAGGG-TTTAGGGTTTATGA
22830291 T
1 T
22830292 ATAATGTTTA
Statistics
Matches: 34, Mismatches: 9, Indels: 1
0.77 0.20 0.02
Matches are distributed among these distances:
21 22 0.65
22 12 0.35
ACGTcount: A:0.20, C:0.00, G:0.28, T:0.52
Consensus pattern (21 bp):
TTTAGGGTTTAGGGTTTATGA
Found at i:22830322 original size:43 final size:43
Alignment explanation
Indices: 22830234--22830322 Score: 99
Period size: 43 Copynumber: 2.1 Consensus size: 43
22830224 TATTTTAGGG
* * * * *
22830234 TTTAGGGTTTATTATTTAAGGTTTAATGTTTATGGTTTAGGGT
1 TTTAGGGTTTATGATATAAGGTTTAATATTTATGGATTAGAGT
* *
22830277 TTTAGGGTTTATGATATAATGTTTATTATTT-TGGGATTAGAGT
1 TTTAGGGTTTATGATATAAGGTTTAATATTTAT-GGATTAGAGT
22830320 TTT
1 TTT
22830323 GAGTTTAGGG
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
42 1 0.03
43 37 0.97
ACGTcount: A:0.22, C:0.00, G:0.24, T:0.54
Consensus pattern (43 bp):
TTTAGGGTTTATGATATAAGGTTTAATATTTATGGATTAGAGT
Found at i:22830330 original size:14 final size:14
Alignment explanation
Indices: 22830313--22830357 Score: 65
Period size: 14 Copynumber: 3.2 Consensus size: 14
22830303 TATTTTGGGA
22830313 TTAGAGTTT-TGAGT
1 TTAGAGTTTATG-GT
*
22830327 TTAGGGTTTATGGT
1 TTAGAGTTTATGGT
22830341 TTAGAGTTTATGGT
1 TTAGAGTTTATGGT
22830355 TTA
1 TTA
22830358 TGGTTTTATA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
14 26 0.93
15 2 0.07
ACGTcount: A:0.20, C:0.00, G:0.29, T:0.51
Consensus pattern (14 bp):
TTAGAGTTTATGGT
Found at i:22830335 original size:7 final size:7
Alignment explanation
Indices: 22830325--22830363 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
22830315 AGAGTTTTGA
*
22830325 GTTTAGG
1 GTTTATG
22830332 GTTTATG
1 GTTTATG
22830339 GTTTA-G
1 GTTTATG
22830345 AGTTTATG
1 -GTTTATG
22830353 GTTTATG
1 GTTTATG
22830360 GTTT
1 GTTT
22830364 TATAGTTAGG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
6 1 0.03
7 27 0.93
8 1 0.03
ACGTcount: A:0.15, C:0.00, G:0.31, T:0.54
Consensus pattern (7 bp):
GTTTATG
Found at i:22830347 original size:21 final size:21
Alignment explanation
Indices: 22830318--22830363 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
22830308 TGGGATTAGA
*
22830318 GTTTTGAGTTTAGGGTTTATG
1 GTTTAGAGTTTAGGGTTTATG
*
22830339 GTTTAGAGTTTATGGTTTATG
1 GTTTAGAGTTTAGGGTTTATG
22830360 GTTT
1 GTTT
22830364 TATAGTTAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.15, C:0.00, G:0.30, T:0.54
Consensus pattern (21 bp):
GTTTAGAGTTTAGGGTTTATG
Found at i:22830608 original size:14 final size:14
Alignment explanation
Indices: 22830569--22830649 Score: 60
Period size: 14 Copynumber: 5.9 Consensus size: 14
22830559 AAGGTTTAAG
22830569 GTTTATGATTTAGT
1 GTTTATGATTTAGT
*
22830583 G-TTAAGAGTTTAGT
1 GTTTATGA-TTTAGT
* *
22830597 GTTTACGATTTAGG
1 GTTTATGATTTAGT
* *
22830611 GTGTA-GGTTTA-T
1 GTTTATGATTTAGT
*
22830623 GGTTTATGGTTTAGT
1 -GTTTATGATTTAGT
*
22830638 GTTTAGGATTTA
1 GTTTATGATTTA
22830650 TGGTTTAGTG
Statistics
Matches: 53, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
13 14 0.26
14 33 0.62
15 6 0.11
ACGTcount: A:0.21, C:0.01, G:0.28, T:0.49
Consensus pattern (14 bp):
GTTTATGATTTAGT
Found at i:22830626 original size:7 final size:7
Alignment explanation
Indices: 22830616--22830670 Score: 62
Period size: 7 Copynumber: 7.9 Consensus size: 7
22830606 TTAGGGTGTA
22830616 GGTTTAT
1 GGTTTAT
22830623 GGTTTAT
1 GGTTTAT
22830630 GGTTTA-
1 GGTTTAT
22830636 GTGTTTA-
1 G-GTTTAT
22830643 GGATTTAT
1 GG-TTTAT
22830651 GGTTTAGT
1 GGTTTA-T
22830659 GG-TTAT
1 GGTTTAT
22830665 GGTTTA
1 GGTTTA
22830671 GGGGTTAGGG
Statistics
Matches: 43, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
6 5 0.12
7 33 0.77
8 5 0.12
ACGTcount: A:0.16, C:0.00, G:0.31, T:0.53
Consensus pattern (7 bp):
GGTTTAT
Found at i:22830641 original size:21 final size:21
Alignment explanation
Indices: 22830590--22830670 Score: 94
Period size: 21 Copynumber: 3.9 Consensus size: 21
22830580 AGTGTTAAGA
* * *
22830590 GTTTAGTGTTTACGATTTAGG
1 GTTTAGTGTTTATGGTTTATG
*
22830611 GTGTAG-GTTTATGGTTTATG
1 GTTTAGTGTTTATGGTTTATG
22830631 GTTTAGTGTTTA-GGATTTATG
1 GTTTAGTGTTTATGG-TTTATG
*
22830652 GTTTAGTGGTTATGGTTTA
1 GTTTAGTGTTTATGGTTTA
22830671 GGGGTTAGGG
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
20 18 0.35
21 31 0.61
22 2 0.04
ACGTcount: A:0.17, C:0.01, G:0.31, T:0.51
Consensus pattern (21 bp):
GTTTAGTGTTTATGGTTTATG
Found at i:22830676 original size:14 final size:14
Alignment explanation
Indices: 22830619--22830677 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
22830609 GGGTGTAGGT
* *
22830619 TTATGGTTTATGGT
1 TTATGGTTTAGGGG
**
22830633 TTA-GTGTTTAGGAT
1 TTATG-GTTTAGGGG
*
22830647 TTATGGTTTAGTGG
1 TTATGGTTTAGGGG
22830661 TTATGGTTTAGGGG
1 TTATGGTTTAGGGG
22830675 TTA
1 TTA
22830678 GGGGCTTAGG
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
13 1 0.03
14 35 0.95
15 1 0.03
ACGTcount: A:0.17, C:0.00, G:0.32, T:0.51
Consensus pattern (14 bp):
TTATGGTTTAGGGG
Found at i:22830678 original size:21 final size:21
Alignment explanation
Indices: 22830623--22830692 Score: 77
Period size: 21 Copynumber: 3.3 Consensus size: 21
22830613 GTAGGTTTAT
*
22830623 GGTTTATGGTTTAGTGTTTAG
1 GGTTTATGGTTTAGTGGTTAG
* *
22830644 GATTTATGGTTTAGTGGTTAT
1 GGTTTATGGTTTAGTGGTTAG
* * *
22830665 GGTTTAGGGGTTAGGGGCTTAG
1 GGTTTATGGTTTAGTGG-TTAG
22830687 GGTTTA
1 GGTTTA
22830693 AAGTTTATGA
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
21 31 0.77
22 9 0.22
ACGTcount: A:0.16, C:0.01, G:0.37, T:0.46
Consensus pattern (21 bp):
GGTTTATGGTTTAGTGGTTAG
Found at i:22830699 original size:29 final size:29
Alignment explanation
Indices: 22830666--22830721 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
22830656 AGTGGTTATG
*
22830666 GTTTAGGGGTTAGGGGCTTAGGGTTTAAA
1 GTTTAGGAGTTAGGGGCTTAGGGTTTAAA
* *
22830695 GTTTATGATTTAGGGGCTTAGGGTTTA
1 GTTTAGGAGTTAGGGGCTTAGGGTTTA
22830722 TGTTTAGTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.20, C:0.04, G:0.38, T:0.39
Consensus pattern (29 bp):
GTTTAGGAGTTAGGGGCTTAGGGTTTAAA
Found at i:22831567 original size:38 final size:41
Alignment explanation
Indices: 22831516--22831600 Score: 122
Period size: 43 Copynumber: 2.1 Consensus size: 41
22831506 TGCAATACCA
*
22831516 ATTTGACTTAAACG-G-TGT-CATTTTCTTCCCCAAATCAC
1 ATTTGACTTAAACGCGAAGTCCATTTTCTTCCCCAAATCAC
22831554 ATTTGACTTAAACGTCGAAAGTCCATTTTCTTCCCCAAATCAC
1 ATTTGACTTAAACG-CG-AAGTCCATTTTCTTCCCCAAATCAC
22831597 ATTT
1 ATTT
22831601 CCTCAAAATT
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
38 14 0.34
40 1 0.02
42 2 0.05
43 24 0.59
ACGTcount: A:0.28, C:0.26, G:0.09, T:0.36
Consensus pattern (41 bp):
ATTTGACTTAAACGCGAAGTCCATTTTCTTCCCCAAATCAC
Found at i:22833501 original size:43 final size:43
Alignment explanation
Indices: 22833451--22833698 Score: 279
Period size: 43 Copynumber: 5.8 Consensus size: 43
22833441 CTTTAGCGGT
* *
22833451 CTTTAGCGGCGCTTTTCCCGCAAACGCCACTAAAGACCAAGAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGAC
22833494 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAA-AGCCAAGAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGA-CCAAGAC
* * *
22833537 CTTTAGCGGCGCCTTCCCCACAAACGCCGCTAAAGACCAAGAT
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGAC
* * *
22833580 CTTTAGCGGCGC-TTTCACCACAAATGCCGCTAAAGATCATGAC
1 CTTTAGCGGCGCTTTTC-CCACAAACGCCGCTAAAGACCAAGAC
* * * * * *
22833623 CTTTAGCGGCGCTTCTACCACAAAC-CCTACTATAGA-TAAAAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCC-GCTAAAGACCAAGAC
** * *
22833665 CTTTAGCGGCGCTCCTCGCAAAAACGCCGCTAAA
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAA
22833699 AATATAACCT
Statistics
Matches: 175, Mismatches: 24, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
42 34 0.19
43 138 0.79
44 3 0.02
ACGTcount: A:0.29, C:0.34, G:0.18, T:0.20
Consensus pattern (43 bp):
CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGAC
Found at i:22838336 original size:14 final size:15
Alignment explanation
Indices: 22838317--22838348 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
22838307 CACTTAAACT
22838317 ATAATCCCT-AATCC
1 ATAATCCCTAAATCC
22838331 ATAATCCCTAAATCC
1 ATAATCCCTAAATCC
22838346 ATA
1 ATA
22838349 TATAATCCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.41, C:0.31, G:0.00, T:0.28
Consensus pattern (15 bp):
ATAATCCCTAAATCC
Found at i:22838533 original size:25 final size:25
Alignment explanation
Indices: 22838504--22838551 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
22838494 TATATGAAAT
*
22838504 TATTTAATATATAAATTAAAAAACA
1 TATTTAAAATATAAATTAAAAAACA
22838529 TATTTAAAATATAAATTAAAAAA
1 TATTTAAAATATAAATTAAAAAA
22838552 TAATTAATCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (25 bp):
TATTTAAAATATAAATTAAAAAACA
Found at i:22838663 original size:23 final size:23
Alignment explanation
Indices: 22838618--22838667 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
22838608 CCTGACTCTT
22838618 AACCCCATAACATCTAACCCCTA
1 AACCCCATAACATCTAACCCCTA
22838641 AACCCC-TAACCA-CTAACCACCTA
1 AACCCCATAA-CATCTAACC-CCTA
22838664 AACC
1 AACC
22838668 TTAAATCTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 9 0.36
23 16 0.64
ACGTcount: A:0.40, C:0.46, G:0.00, T:0.14
Consensus pattern (23 bp):
AACCCCATAACATCTAACCCCTA
Found at i:22838716 original size:15 final size:15
Alignment explanation
Indices: 22838680--22838720 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
22838670 AAATCTCAAC
22838680 CCTTAAA-CCATAAT
1 CCTTAAATCCATAAT
*
22838694 CCCT-AATCCATAAT
1 CCTTAAATCCATAAT
22838708 CCTTAAATCCATA
1 CCTTAAATCCATA
22838721 CTCCCTAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
13 2 0.09
14 13 0.57
15 8 0.35
ACGTcount: A:0.39, C:0.32, G:0.00, T:0.29
Consensus pattern (15 bp):
CCTTAAATCCATAAT
Found at i:22838733 original size:22 final size:22
Alignment explanation
Indices: 22838660--22838736 Score: 70
Period size: 22 Copynumber: 3.6 Consensus size: 22
22838650 CCACTAACCA
22838660 CCTAAACCTTAAATCTCA-AC-C
1 CCTAAACCTTAAATC-CATACTC
* * * *
22838681 CTTAAACCAT-AATCCCTAATC
1 CCTAAACCTTAAATCCATACTC
* *
22838702 CATAATCCTTAAATCCATACTC
1 CCTAAACCTTAAATCCATACTC
22838724 CCTAAACCTTAAA
1 CCTAAACCTTAAA
22838737 ACAGTAACTC
Statistics
Matches: 42, Mismatches: 11, Indels: 5
0.72 0.19 0.09
Matches are distributed among these distances:
19 1 0.02
20 5 0.12
21 16 0.38
22 20 0.48
ACGTcount: A:0.39, C:0.34, G:0.00, T:0.27
Consensus pattern (22 bp):
CCTAAACCTTAAATCCATACTC
Found at i:22839139 original size:41 final size:40
Alignment explanation
Indices: 22839079--22839394 Score: 282
Period size: 41 Copynumber: 7.8 Consensus size: 40
22839069 TAAAATAATT
* * *
22839079 TTAGCGGCGCTTCAT-CAAAAACGTCGCTAAAGCCCCTACCA
1 TTAGCGGCGCTT-TTCCAAAAACGCCGCTAAAG-CCCTAGCA
* *
22839120 TTAGCGGCGCTTTTCCAAAAACACCGCTAAAG----ACCA
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCTAGCA
* * * * **
22839156 TTAGCGGCGATTTTCCAAAAACGCTGCTAAAAACTCGGGCA
1 TTAGCGGCGCTTTTCCAAAAACGCCGCT-AAAGCCCTAGCA
* * * *
22839197 TTAGCGGCGCTTCTCCAAAAACGCCGCTAAAGACTTGGGCA
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCT-AGCA
* * * *
22839238 TTAGCGGCGCTTCTCTAAAAACGCCACTAAAGACCTAGACA
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCTAG-CA
** * *
22839279 TTAGCGGCGCTTTTAAAAAAACGCCGCTAAAGACCTGGGCA
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCT-AGCA
* *
22839320 TTAGCGGCGCTTTTCCAGAAACGCCGCTAAAGACCCGAGCA
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAG-CCCTAGCA
** *
22839361 TTAGCGGCGCTTTTTTAAAAATGCCGCTAAAGCC
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCC
22839395 ACGAAAGGTC
Statistics
Matches: 229, Mismatches: 36, Indels: 21
0.80 0.13 0.07
Matches are distributed among these distances:
36 29 0.13
37 3 0.01
40 7 0.03
41 187 0.82
42 3 0.01
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (40 bp):
TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCTAGCA
Found at i:22839285 original size:82 final size:81
Alignment explanation
Indices: 22839079--22839392 Score: 329
Period size: 82 Copynumber: 3.9 Consensus size: 81
22839069 TAAAATAATT
* * *
22839079 TTAGCGGCGCTTCAT-CAAAAACGTCGCTAAAGCCCCTA-CCATTAGCGGCGCTTTTCCAAAAAC
1 TTAGCGGCGCTTC-TCCAAAAACGCCGCTAAAG-ACCTAGACATTAGCGGCGCTTTTCCAAAAAC
*
22839142 ACCGCTAAAGAC----CA
64 GCCGCTAAAGACTGGGCA
* * * * * * *
22839156 TTAGCGGCGATTTTCCAAAAACGCTGCTAAA-AACTCGGGCATTAGCGGCGCTTCTCCAAAAACG
1 TTAGCGGCGCTTCTCCAAAAACGCCGCTAAAGACCT-AGACATTAGCGGCGCTTTTCCAAAAACG
22839220 CCGCTAAAGACTTGGGCA
65 CCGCTAAAGAC-TGGGCA
* * **
22839238 TTAGCGGCGCTTCTCTAAAAACGCCACTAAAGACCTAGACATTAGCGGCGCTTTTAAAAAAACGC
1 TTAGCGGCGCTTCTCCAAAAACGCCGCTAAAGACCTAGACATTAGCGGCGCTTTTCCAAAAACGC
22839303 CGCTAAAGACCTGGGCA
66 CGCTAAAGA-CTGGGCA
* * * ** *
22839320 TTAGCGGCGCTTTTCCAGAAACGCCGCTAAAGACC-CGAGCATTAGCGGCGCTTTTTTAAAAATG
1 TTAGCGGCGCTTCTCCAAAAACGCCGCTAAAGACCTAGA-CATTAGCGGCGCTTTTCCAAAAACG
22839384 CCGCTAAAG
65 CCGCTAAAG
22839393 CCACGAAAGG
Statistics
Matches: 197, Mismatches: 29, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
75 2 0.01
76 1 0.01
77 59 0.30
81 2 0.01
82 129 0.65
83 4 0.02
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (81 bp):
TTAGCGGCGCTTCTCCAAAAACGCCGCTAAAGACCTAGACATTAGCGGCGCTTTTCCAAAAACGC
CGCTAAAGACTGGGCA
Found at i:22839342 original size:123 final size:118
Alignment explanation
Indices: 22839079--22839392 Score: 371
Period size: 123 Copynumber: 2.6 Consensus size: 118
22839069 TAAAATAATT
* * * * * *
22839079 TTAGCGGCGCTTCAT-CAAAAACGTCGCTAAAGCCCCTACCATTAGCGGCGCTTTTCCAAAAACA
1 TTAGCGGCGCTTC-TCCAAAAACGCCGCTAAAGACCCGAGCATTAGCGGCGCTTTTCTAAAAACG
** *
22839143 CCGCTAAAGACCATTAGCGGCGATTTTCCAAAAACGCTGCTAAAAACTCGGGCA
65 CCGCTAAAGACCATTAGCGGCGATTTTAAAAAAACGCCGCTAAAAACTCGGGCA
** * *
22839197 TTAGCGGCGCTTCTCCAAAAACGCCGCTAAAGACTTGGGCATTAGCGGCGCTTCTCTAAAAACGC
1 TTAGCGGCGCTTCTCCAAAAACGCCGCTAAAGACCCGAGCATTAGCGGCGCTTTTCTAAAAACGC
* * *
22839262 CACTAAAGACCTAGACATTAGCGGCGCTTTTAAAAAAACGCCGCTAAAGAC-CTGGGCA
66 CGCTAAAGA-C----CATTAGCGGCGATTTTAAAAAAACGCCGCTAAAAACTC-GGGCA
* * * *
22839320 TTAGCGGCGCTTTTCCAGAAACGCCGCTAAAGACCCGAGCATTAGCGGCGCTTTTTTAAAAATGC
1 TTAGCGGCGCTTCTCCAAAAACGCCGCTAAAGACCCGAGCATTAGCGGCGCTTTTCTAAAAACGC
22839385 CGCTAAAG
66 CGCTAAAG
22839393 CCACGAAAGG
Statistics
Matches: 164, Mismatches: 25, Indels: 9
0.83 0.13 0.05
Matches are distributed among these distances:
117 1 0.01
118 61 0.37
119 1 0.01
122 1 0.01
123 100 0.61
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (118 bp):
TTAGCGGCGCTTCTCCAAAAACGCCGCTAAAGACCCGAGCATTAGCGGCGCTTTTCTAAAAACGC
CGCTAAAGACCATTAGCGGCGATTTTAAAAAAACGCCGCTAAAAACTCGGGCA
Found at i:22841980 original size:3 final size:3
Alignment explanation
Indices: 22841972--22842004 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
22841962 TAGTTTACCC
22841972 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
22842005 TCCAGTCAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:22843704 original size:16 final size:17
Alignment explanation
Indices: 22843683--22843716 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
22843673 TCTTTTCAAA
22843683 TTTAAA-TTAAACTATT
1 TTTAAATTTAAACTATT
*
22843699 TTTAAATTTAAATTATT
1 TTTAAATTTAAACTATT
22843716 T
1 T
22843717 ACGCTAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTAAATTTAAACTATT
Found at i:22844988 original size:28 final size:28
Alignment explanation
Indices: 22844948--22845004 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
22844938 ACCAAAATGC
* *
22844948 TATAATTTTTTTTATTTATCAAAATATA
1 TATAAATTTTTTTATTTACCAAAATATA
22844976 TATAAATTTTTTTATTTACCAAAATATA
1 TATAAATTTTTTTATTTACCAAAATATA
22845004 T
1 T
22845005 CAAAAAAACT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.54
Consensus pattern (28 bp):
TATAAATTTTTTTATTTACCAAAATATA
Found at i:22845219 original size:4 final size:4
Alignment explanation
Indices: 22845210--22845278 Score: 56
Period size: 4 Copynumber: 17.5 Consensus size: 4
22845200 GGGGAAGAAG
* *
22845210 AAGA AAGA AAGG AAGA AAG- AA-A AAGA AGGAA AAGGA AAG- AAG- AAGA
1 AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAG-A AA-GA AAGA AAGA AAGA
*
22845256 AAGA AAGAA AAAA AAGA AAGA AA
1 AAGA AAG-A AAGA AAGA AAGA AA
22845279 AGGAAAGGGG
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
3 10 0.19
4 34 0.64
5 8 0.15
6 1 0.02
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:22845235 original size:10 final size:10
Alignment explanation
Indices: 22845204--22845285 Score: 80
Period size: 10 Copynumber: 8.3 Consensus size: 10
22845194 AGGAGAGGGG
*
22845204 AAGAAGAAGA
1 AAGAAAAAGA
22845214 AAGAAAGGAAGA
1 AAGAAA--AAGA
22845226 AAGAAAAAGA
1 AAGAAAAAGA
* *
22845236 AGGAAAAGGA
1 AAGAAAAAGA
*
22845246 AAGAAGAAGA
1 AAGAAAAAGA
22845256 AAG--AAAGA
1 AAGAAAAAGA
22845264 AA-AAAAAGA
1 AAGAAAAAGA
*
22845273 AAGAAAAGGA
1 AAGAAAAAGA
22845283 AAG
1 AAG
22845286 GGGAAGAAAA
Statistics
Matches: 59, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
8 6 0.10
9 7 0.12
10 36 0.61
12 10 0.17
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (10 bp):
AAGAAAAAGA
Found at i:22845250 original size:42 final size:40
Alignment explanation
Indices: 22845190--22845299 Score: 118
Period size: 37 Copynumber: 2.8 Consensus size: 40
22845180 TGGTGGGGGG
* * *
22845190 AAGAAGGAGAGGGGAAGAAGAAGAAAGAAAGGAAGAAAGAAA
1 AAGAAGGAAAAGGAAAGAAGAAGAAAGAAA-GAAGAAA-AAA
22845232 AAGAAGGAAAAGGAAAGAAGAAGAAAG--A-AAGAAAAAA
1 AAGAAGGAAAAGGAAAGAAGAAGAAAGAAAGAAGAAAAAA
* ** *
22845269 AAGAAAGAAAAGGAAAGGGGAAGAAAAAAAG
1 AAGAAGGAAAAGGAAAGAAGAAGAAAGAAAG
22845300 CAGTATATAA
Statistics
Matches: 58, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
37 26 0.45
38 6 0.10
39 1 0.02
40 1 0.02
42 24 0.41
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (40 bp):
AAGAAGGAAAAGGAAAGAAGAAGAAAGAAAGAAGAAAAAA
Found at i:22845269 original size:27 final size:27
Alignment explanation
Indices: 22845212--22845299 Score: 70
Period size: 27 Copynumber: 3.0 Consensus size: 27
22845202 GGAAGAAGAA
*
22845212 GAAAGAAAGGAAGAAAGAAAAAGAAGGAAAAG
1 GAAAG-AA-GAAGAAAG-AA-AGAA-AAAAAG
*
22845244 GAAAGAAGAAGAAAGAAAGAAAAAAAA
1 GAAAGAAGAAGAAAGAAAGAAAAAAAG
*
22845271 GAAAGAA-AAGGAAAGGGGAAGAAAAAAAG
1 GAAAGAAGAA-GAAA--GAAAGAAAAAAAG
22845300 CAGTATATAA
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
26 2 0.04
27 15 0.31
28 4 0.08
29 13 0.27
30 8 0.16
31 2 0.04
32 5 0.10
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (27 bp):
GAAAGAAGAAGAAAGAAAGAAAAAAAG
Found at i:22845273 original size:13 final size:13
Alignment explanation
Indices: 22845239--22845279 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
22845229 AAAAAGAAGG
*
22845239 AAAAGGAAAGAAGA
1 AAAAAGAAAGAA-A
*
22845253 AGAAAGAAAGAAA
1 AAAAAGAAAGAAA
22845266 AAAAAGAAAGAAA
1 AAAAAGAAAGAAA
22845279 A
1 A
22845280 GGAAAGGGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
13 14 0.58
14 10 0.42
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAGAAA
Found at i:22845279 original size:37 final size:38
Alignment explanation
Indices: 22845207--22845299 Score: 125
Period size: 37 Copynumber: 2.4 Consensus size: 38
22845197 AGAGGGGAAG
* *
22845207 AAGAAGAAAGAAAGGAAGAAAGAAAAAGAAGGAAAAGGA
1 AAGAAG-AAGAAAGAAAGAAAGAAAAAGAAAGAAAAGGA
22845246 AAGAAGAAGAAAGAAAGAAA-AAAAAGAAAGAAAAGGA
1 AAGAAGAAGAAAGAAAGAAAGAAAAAGAAAGAAAAGGA
** *
22845283 AAGGGGAAGAAAAAAAG
1 AAGAAGAAGAAAGAAAG
22845300 CAGTATATAA
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
37 30 0.61
38 13 0.27
39 6 0.12
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (38 bp):
AAGAAGAAGAAAGAAAGAAAGAAAAAGAAAGAAAAGGA
Found at i:22846104 original size:18 final size:17
Alignment explanation
Indices: 22846077--22846112 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
22846067 TATTTTGGTA
22846077 TTTTTTTAATATTTTAT
1 TTTTTTTAATATTTTAT
*
22846094 TTTTTTGTAATGTTTTAT
1 TTTTTT-TAATATTTTAT
22846112 T
1 T
22846113 ATGGGTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.19, C:0.00, G:0.06, T:0.75
Consensus pattern (17 bp):
TTTTTTTAATATTTTAT
Found at i:22846215 original size:28 final size:27
Alignment explanation
Indices: 22846149--22846241 Score: 131
Period size: 24 Copynumber: 3.5 Consensus size: 27
22846139 AAATAAAAAA
22846149 TTACCAAAATAT-TATAAATTTTTTTAT
1 TTACCAAAATATATAT-AATTTTTTTAT
22846176 TTACCAAAATATATAT-A--TTTTTAT
1 TTACCAAAATATATATAATTTTTTTAT
*
22846200 TTACCAATATATATATAATTTTGTTTAT
1 TTACCAAAATATATATAATTTT-TTTAT
22846228 TTACCAAAATATAT
1 TTACCAAAATATAT
22846242 CAAAAAAACT
Statistics
Matches: 59, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
24 22 0.37
25 1 0.02
26 1 0.02
27 14 0.24
28 21 0.36
ACGTcount: A:0.41, C:0.09, G:0.01, T:0.49
Consensus pattern (27 bp):
TTACCAAAATATATATAATTTTTTTAT
Found at i:22851159 original size:3 final size:3
Alignment explanation
Indices: 22851151--22851176 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
22851141 CTTAATACCT
22851151 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
22851177 CTATAAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:22851165 original size:61 final size:59
Alignment explanation
Indices: 22851025--22851167 Score: 143
Period size: 61 Copynumber: 2.4 Consensus size: 59
22851015 CCTCTAATCC
*
22851025 TAATAACTAAC-ACAATAATAATATATTTTATATACAAAATAATACTAACTAAAATTAT
1 TAATAACTAACTATAATAATAATATATTTTATATACAAAATAATACTAACTAAAATTAT
* * * *
22851083 TAATAACTAACTATAAAAATAATACTAGTTTT-T-TACTAACAATAATACTAAGTAACA-TCT
1 TAATAACTAACTATAATAATAATA-TA-TTTTATATAC-AA-AATAATACTAACTAAAATTAT
*
22851143 TAATACCTTAA-TAATAATAATAATA
1 TAATAAC-TAACT-ATAATAATAATA
22851168 ATAATAATAC
Statistics
Matches: 71, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
58 11 0.15
59 13 0.18
60 14 0.20
61 33 0.46
ACGTcount: A:0.52, C:0.11, G:0.01, T:0.35
Consensus pattern (59 bp):
TAATAACTAACTATAATAATAATATATTTTATATACAAAATAATACTAACTAAAATTAT
Found at i:22851672 original size:26 final size:26
Alignment explanation
Indices: 22851641--22851708 Score: 68
Period size: 28 Copynumber: 2.5 Consensus size: 26
22851631 AGTTTTTTTG
*
22851641 ATATATTCTAGTAA-ACAAAAAATTAT
1 ATATATT-TAGTAATAAAAAAAATTAT
*
22851667 ATATATTTTGATAAATAAAAAAAATTAT
1 ATATATTTAG-T-AATAAAAAAAATTAT
22851695 A-ATATTTTAGTAAT
1 ATATA-TTTAGTAAT
22851709 TTTTATTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
25 2 0.06
26 11 0.31
27 6 0.17
28 16 0.46
ACGTcount: A:0.53, C:0.03, G:0.04, T:0.40
Consensus pattern (26 bp):
ATATATTTAGTAATAAAAAAAATTAT
Found at i:22862049 original size:53 final size:53
Alignment explanation
Indices: 22861965--22862176 Score: 246
Period size: 53 Copynumber: 4.0 Consensus size: 53
22861955 AAATGGCATT
* * * * * *
22861965 GAAGACCATATCATGTAAGATCGTAATTGGTGGGTTATGACACCATAAGAAAA
1 GAAGACCATATCATGTAAGATCATAACTGGTAGGTTATGACATCATATGGAAA
** *
22862018 GAAGACCATATCATGTAAGATTGTAACTGGTGGGTTATGACATCATATGGAAA
1 GAAGACCATATCATGTAAGATCATAACTGGTAGGTTATGACATCATATGGAAA
** * *
22862071 GAAGACCATATTGTGTTAGACCATAACTGGTAGGTTATTG-CATCATATGGAAA
1 GAAGACCATATCATGTAAGATCATAACTGGTAGGTTA-TGACATCATATGGAAA
* * * * *
22862124 GAATACCATATCGTGTAAGATCATAACTGATAGGTTATGGCATTATATGGAAA
1 GAAGACCATATCATGTAAGATCATAACTGGTAGGTTATGACATCATATGGAAA
22862177 ATTTAAGGAA
Statistics
Matches: 139, Mismatches: 18, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
52 2 0.01
53 135 0.97
54 2 0.01
ACGTcount: A:0.37, C:0.12, G:0.23, T:0.28
Consensus pattern (53 bp):
GAAGACCATATCATGTAAGATCATAACTGGTAGGTTATGACATCATATGGAAA
Found at i:22864969 original size:15 final size:15
Alignment explanation
Indices: 22864949--22864978 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
22864939 ATCTTGTGGC
22864949 AAAAAGAAGAAGAAA
1 AAAAAGAAGAAGAAA
22864964 AAAAAGAAGAAGAAA
1 AAAAAGAAGAAGAAA
22864979 GATATGGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (15 bp):
AAAAAGAAGAAGAAA
Found at i:22880049 original size:29 final size:28
Alignment explanation
Indices: 22880013--22880085 Score: 96
Period size: 29 Copynumber: 2.5 Consensus size: 28
22880003 TCATGAGATT
22880013 GGCACTAAGTGTGC-AGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGA-GTTTAAA--GTACA
22880043 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGAGTTTAAAGTACA
22880070 TGGCACTAAGTGTGCG
1 -GGCACTAAGTGTGCG
22880086 TGGTTGATTA
Statistics
Matches: 40, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
27 5 0.12
29 34 0.85
30 1 0.03
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (28 bp):
GGCACTAAGTGTGCGAGTTTAAAGTACA
Found at i:22880308 original size:174 final size:174
Alignment explanation
Indices: 22880043--22880404 Score: 697
Period size: 174 Copynumber: 2.1 Consensus size: 174
22880033 AAATTGTACA
22880043 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
22880108 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
*
22880173 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGAGAACTTGAAATGCATG
*
22880217 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
*
22880282 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTATCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
22880347 TTTTGGACAGCGGAAAAGGTAAGTGTGAGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGAGAACTTGAAATGCATG
22880391 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
22880405 CGGTTGATTA
Statistics
Matches: 184, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 184 1.00
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGAGAACTTGAAATGCATG
Found at i:22880488 original size:145 final size:145
Alignment explanation
Indices: 22880242--22880515 Score: 503
Period size: 145 Copynumber: 1.9 Consensus size: 145
22880232 GTTTAAAGTA
*
22880242 CATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
1 CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
* * *
22880307 ATAAATTATTTACATTAAGGGTGCGACCTTATCGAGTCGATTTTGGACAGCGGAAAAGGTAAGTG
66 ATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGTG
22880372 TGAGAACTTGAAATG
131 TGAGAACTTGAAATG
22880387 CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
1 CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
*
22880452 ATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGT
66 ATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGT
22880516 ACCTTGAGTT
Statistics
Matches: 124, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
145 124 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (145 bp):
CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
ATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGTG
TGAGAACTTGAAATG
Found at i:22888330 original size:29 final size:28
Alignment explanation
Indices: 22888295--22888370 Score: 100
Period size: 29 Copynumber: 2.6 Consensus size: 28
22888285 ATGAGATTGA
22888295 CACTAAGTGTGCGGGTTTAAATTGTACA-G
1 CACTAAGTGTGCGGGTTTAAA--GTACAGG
*
22888324 CACTAAGTGTGCGAGTTTAAAGTACATGG
1 CACTAAGTGTGCGGGTTTAAAGTACA-GG
22888353 CACTAAGTGTGCGTGGTT
1 CACTAAGTGTGCG-GGTT
22888371 GATTATTAAG
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
27 5 0.12
29 34 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
CACTAAGTGTGCGGGTTTAAAGTACAGG
Found at i:22888588 original size:174 final size:174
Alignment explanation
Indices: 22888323--22888684 Score: 688
Period size: 174 Copynumber: 2.1 Consensus size: 174
22888313 AAATTGTACA
22888323 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
22888388 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
22888453 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
22888497 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
* *
22888562 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTATCGAGTCGG
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
22888627 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
22888671 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
22888685 CGGTTGATTA
Statistics
Matches: 183, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 183 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:22888768 original size:145 final size:145
Alignment explanation
Indices: 22888522--22888795 Score: 485
Period size: 145 Copynumber: 1.9 Consensus size: 145
22888512 GTTTAAAGTA
* *
22888522 CATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
1 CATGACACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
* * **
22888587 ATAAATTATTTACATTAAGGGTGCGACCTTATCGAGTCGGTTTTGGACAGCGGAAAAGGTAAGTG
66 ATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGTG
22888652 TGCGAACTTGAAATG
131 TGCGAACTTGAAATG
22888667 CATGACACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
1 CATGACACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
*
22888732 ATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGT
66 ATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGT
22888796 ACCTTGAGTT
Statistics
Matches: 122, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
145 122 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (145 bp):
CATGACACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
ATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGTG
TGCGAACTTGAAATG
Found at i:22915434 original size:608 final size:607
Alignment explanation
Indices: 22900946--22918364 Score: 32002
Period size: 605 Copynumber: 29.0 Consensus size: 607
22900936 GAAAGGTTAC
22900946 GTTC-GTTGACCAAGT-CG--CATTTTATT-C-TTTCAGATGGACTACTCTC-G-AAAAGTTAGT
1 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
22901003 GAAGCTCTACATTT-TGAGATTGT-AGACTGC-TGGG-T-CAATTTC-AT-ATCTCTGATAT-GA
66 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGTTCCAATTTCAATAATCTCTGATATGGA
22901060 TCCTCTCTTCACTTCACGGTTCTAGAAG-AACTTCAC-AGGCT-T-GGTTCGAGATTGGACTTCA
131 TCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTCA
22901121 GT--TG-GTTCCATCCTCAG-CCGATGGTCAATTTGAGA-GGTGATTCATATA-T--AGGATATG
196 GTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATATG
22901178 ATTTGGAGCTATGT-A-TTATTT-T-AGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCGC
261 ATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCGC
22901239 CTACAAT-ACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCT-TATATGGTCATAAGT
326 CTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGT
22901302 GTCATACTCTGTTATATTAGACTGAG-T-GGTGAGCGAC-GGTTTTGGGTCCTGAGTTGGTTTCC
391 GTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCC
22901364 GAGACTGAAGATAATGTTAGACTAATTT-GGATCGTCTGAAGGC-TCTTCTGATAGATAG-AGTC
456 GAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTC
22901426 TTATGCAAATCTG-AAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTA-
521 TTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAT
22901489 CTCCGTGG-AAAAGGTTCTACG
586 CTCCGTGGAAAAAGGTTCTACG
22901510 GTTC-GTTGACC-AGTCCGCTCATTTTATT-CTTTT--GATGGACTACTCTCTGC-AAAGTTAGT
1 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
22901569 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGTTCCAATTTCAATAATCTCTGATATGGA
66 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGTTCCAATTTCAATAATCTCTGATATGGA
*
22901634 TCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGAACTTCA
131 TCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTCA
22901699 GTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACT--AGGATATG
196 GTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATATG
22901762 A-TT-G-GCTATGTGATTTATTTCTGAGGTAGTTGGGAGGA-TTTTTA-CGTTAGTTGAGTT--C
261 ATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCGC
22901820 CTACAAT-A-AGTTTCCAATCTAGCATCTAGATGGCACC-TACGAGGCTCTATATGGTCATAAGT
326 CTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGT
22901882 GTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGT-CTGAGTTGGTTTCC
391 GTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCC
22901946 GAGACTGAAGATAATGTTAGACT-ATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTC
456 GAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTC
22902010 TTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTT-AGGTA-
521 TTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAT
22902073 CTCCGTGG-AAAAGGTTCTACG
586 CTCCGTGGAAAAAGGTTCTACG
*
22902094 GTTC-GTTGACCAAGTCCGCTCATTTTATTCCTGTTCAGATGGACTACTCTCTGC-AAAGTTAGT
1 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
22902157 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGGTT-CAATTTCAATAATCTCTGATATGG
66 GAAGCTCTACATTTCTGAGATTGTAAGACTGCAT-GGGTTCCAATTTCAATAATCTCTGATATGG
22902221 ATCCTCTCTTCACTTCACGGTT-TAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATT-GACTTC
130 ATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTC
22902284 AGTACTGCGTTCCAT-CTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATAT
195 AGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATAT
22902348 GATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTA-CGTTAGTTGAGTTCG
260 GATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCG
22902412 CCTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAG
325 CCTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAG
22902477 TGTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTC
390 TGTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTC
22902542 CGAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGT
455 CGAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGT
22902607 CTTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTAT-GGGGACTTTGTATTTCTTAAGGTA
520 CTTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTA
*
22902671 ACTCCGTGGAAAAAGGTTCTACG
585 TCTCCGTGGAAAAAGGTTCTACG
*
22902694 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTGTTCAGATGGA-TACTCTC-GCAAAAGTT-GT
1 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
22902756 GAAGCT-TACATTTCTGAGATTGT-AGACTGCATGGGTTCC-ATTTC-ATAATCTCTGATATGGA
66 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGTTCCAATTTCAATAATCTCTGATATGGA
22902817 TCCTCTCTTCACTTCACGGTTCTAGAAG-AA-TTCACAAGGCTCT-GGTTCGAGATT-GACTTCA
131 TCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTCA
22902878 GTA-TGCGTTCCATCCTC-GACCGAT-GTC-ATTTGAGAGGGTGATTCATATACT--AGGATATG
196 GTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATATG
22902937 ATTT-G-GCTATGTGATTTATTTCTGAGGTA-TT-GGAGGA-TTTTTACCGTTAGTTGAGTTCGC
261 ATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCGC
22902997 CTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGT
326 CTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGT
22903062 GTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCC
391 GTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCC
22903127 GAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTC
456 GAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTC
22903192 TTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTA-TTCTTAAGGTA-
521 TTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAT
22903255 CTCCGTGG-AAAAGGTTCTACG
586 CTCCGTGGAAAAAGGTTCTACG
*
22903276 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTGTTCAGATGGACTACTCTCTGCAAAAGTTAGT
1 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
22903341 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGTTCCAATTTCAATAATCTCTGATATGGA
66 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGTTCCAATTTCAATAATCTCTGATATGGA
*
22903406 TCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGAACTTCA
131 TCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTCA
22903471 GTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGA-GATATG
196 GTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATATG
22903535 ATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCGC
261 ATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCGC
22903600 CTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGT
326 CTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGT
22903665 GTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCC
391 GTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCC
22903730 GAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTC
456 GAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTC
22903795 TTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTA-
521 TTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAT
22903859 CTCCGTGG-AAAAGGTTCTACG
586 CTCCGTGGAAAAAGGTTCTACG
*
22903880 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTGTTCAGATGGACTACTCTC-GCAAAAGTTAGT
1 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
22903944 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGGTTCCAATTTCAATAATCTCTGATATGG
66 GAAGCTCTACATTTCTGAGATTGTAAGACTGCAT-GGGTTCCAATTTCAATAATCTCTGATATGG
*
22904009 ATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGAACTTC
130 ATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTC
22904074 AGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATAT
195 AGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATAT
22904139 GATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGA-TTTTTACCGTTAGTTGAGTTCG
260 GATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCG
22904203 CCTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAG
325 CCTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAG
22904268 TGTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTC
390 TGTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTC
22904333 CGAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGT
455 CGAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGT
22904398 CTTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTA
520 CTTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTA
*
22904463 ACTCCGTGG-AAAAGGTTCTACG
585 TCTCCGTGGAAAAAGGTTCTACG
*
22904485 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTGTTCAGATGGACTACTCTCTGCAAAAGTTAGT
1 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
22904550 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGGTTCCAATTTCAATAATCTCTGATATGG
66 GAAGCTCTACATTTCTGAGATTGTAAGACTGCAT-GGGTTCCAATTTCAATAATCTCTGATATGG
*
22904615 ATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGAACTTC
130 ATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTC
22904680 AGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGA-GATAT
195 AGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATAT
22904744 GATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGA-TTTTTACCGTTAGTTGAGTTCG
260 GATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCG
22904808 CCTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAG
325 CCTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAG
22904873 TGTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTC
390 TGTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTC
22904938 CGAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGT
455 CGAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGT
22905003 CTTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTA
520 CTTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTA
22905068 -CTCCGTGGAAAAAGGTTCTACG
585 TCTCCGTGGAAAAAGGTTCTACG
*
22905090 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTGTTCAGATGGACTACTCTCTGCAAAAGTTAGT
1 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
22905155 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGGTTCCAATTTCAATAATCTCTGATATGG
66 GAAGCTCTACATTTCTGAGATTGTAAGACTGCAT-GGGTTCCAATTTCAATAATCTCTGATATGG
*
22905220 ATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGAACTTC
130 ATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTC
22905285 AGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATAT
195 AGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATAT
22905350 GATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGA-TTTTTACCGTTAGTTGAGTTCG
260 GATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCG
22905414 CCTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAG
325 CCTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAG
22905479 TGTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTC
390 TGTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTC
22905544 CGAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGT
455 CGAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGT
22905609 CTTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTA
520 CTTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTA
*
22905674 ACTCCGTGGAAAAAGGTTCTACG
585 TCTCCGTGGAAAAAGGTTCTACG
*
22905697 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTGTTCAGATGGACTACTCTCTGCAAAAGTTAGT
1 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
22905762 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGTTCCAATTTCAATAATCTCTGATATGGA
66 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGTTCCAATTTCAATAATCTCTGATATGGA
*
22905827 TCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGAACTTCA
131 TCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTCA
22905892 GTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATATG
196 GTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATATG
22905957 ATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCGC
261 ATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCGC
22906022 CTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGT
326 CTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGT
22906087 GTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCC
391 GTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCC
22906152 GAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTC
456 GAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTC
22906217 TTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTA-
521 TTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAT
22906281 CTCCGTGG-AAAAGGTTCTACG
586 CTCCGTGGAAAAAGGTTCTACG
*
22906302 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTGTTCAGATGGACTACTCTCTGCAAAAGTTAGT
1 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
22906367 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGTTCCAATTTCAATAATCTCTGATATGGA
66 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGTTCCAATTTCAATAATCTCTGATATGGA
22906432 TCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATT-GACTTCA
131 TCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTCA
22906496 GTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATATG
196 GTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATATG
22906561 ATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCGC
261 ATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCGC
22906626 CTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGT
326 CTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGT
22906691 GTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCC
391 GTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCC
22906756 GAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTC
456 GAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTC
*
22906821 TTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAA
521 TTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAT
22906886 CTCCGTGGAAAAAGGTTCTACG
586 CTCCGTGGAAAAAGGTTCTACG
22906908 GTTCGGTTGACCAAGTCCGCTCATTTTATTCC-TTTCAGATGGACTACTCTCTGCAAAAGTTAGT
1 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
22906972 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGGTTCCAATTTCAATAATCTCTGATATGG
66 GAAGCTCTACATTTCTGAGATTGTAAGACTGCAT-GGGTTCCAATTTCAATAATCTCTGATATGG
*
22907037 ATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGAACTTC
130 ATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTC
22907102 AGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATAT
195 AGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATAT
22907167 GATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCG
260 GATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCG
22907232 CCTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAG
325 CCTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAG
22907297 TGTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTC
390 TGTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTC
22907362 CGAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGT
455 CGAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGT
22907427 CTTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTA
520 CTTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTA
*
22907492 ACTCCGTGGAAAAAGGTTCTACG
585 TCTCCGTGGAAAAAGGTTCTACG
22907515 GTTCGGTTGACCAAGTCCGCTCATTTTATTCC-TTTCAGATGGACTACTCTCTGCAAAAGTTAGT
1 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
22907579 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGTTCCAATTTCAATAATCTCTGATATGGA
66 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGTTCCAATTTCAATAATCTCTGATATGGA
22907644 TCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATT-GACTTCA
131 TCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTCA
22907708 GTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATATG
196 GTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATATG
22907773 ATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCGC
261 ATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCGC
22907838 CTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGT
326 CTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGT
22907903 GTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCC
391 GTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCC
22907968 GAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTC
456 GAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTC
*
22908033 TTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAA
521 TTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAT
22908098 CTCCGTGGAAAAAGGTTCTACG
586 CTCCGTGGAAAAAGGTTCTACG
22908120 GTTCGGTTGACCAAGTCCGCTCATTTTATTCC-TTTCAGATGGACTACTCTCTGCAAAAGTTAGT
1 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
22908184 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGTTCCAATTTCAATAATCTCTGATATGGA
66 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGTTCCAATTTCAATAATCTCTGATATGGA
*
22908249 TCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGAACTTCA
131 TCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTCA
22908314 GTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATATG
196 GTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATATG
22908379 ATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCGC
261 ATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCGC
22908444 CTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGT
326 CTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGT
22908509 GTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCC
391 GTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCC
22908574 GAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTC
456 GAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTC
22908639 TTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTA-
521 TTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAT
22908703 CTCCGTGGAAAAAGGTTCTACG
586 CTCCGTGGAAAAAGGTTCTACG
22908725 GTTCGGTTGACCAAGTCCGCTCATTTTATTCC-TTTCAGATGGACTACTCTCTGCAAAAGTTAGT
1 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
22908789 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGGTTCCAATTTCAATAATCTCTGATATGG
66 GAAGCTCTACATTTCTGAGATTGTAAGACTGCAT-GGGTTCCAATTTCAATAATCTCTGATATGG
22908854 ATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTC
130 ATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTC
22908919 AGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATAT
195 AGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATAT
22908984 GATTTGGAGCTATGTGATTTATTTCTGAGGTAGTT-GGAGGATTTTTTACCGTTAGTTGAGTTCG
260 GATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCG
22909048 CCTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAG
325 CCTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAG
22909113 TGTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTC
390 TGTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTC
22909178 CGAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGT
455 CGAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGT
22909243 CTTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTA
520 CTTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTA
22909308 --TCCGTGGAAAAAGGTTCTACG
585 TCTCCGTGGAAAAAGGTTCTACG
22909329 GTTCGGTTGACCAAGTCCGCTCATTTTATTCC-TTTCAGATGGACTACTCTCTGCAAAAGTTAGT
1 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
22909393 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGTTCCAATTTCAATAATCTCTGATATGGA
66 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGTTCCAATTTCAATAATCTCTGATATGGA
22909458 TCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATT-GACTTCA
131 TCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTCA
22909522 GTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATATG
196 GTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATATG
22909587 ATTTGGAGCTATGTGATTTATTT-TGAGGTAGTT-GGAGGA-TTTTTACCGTTAGTTGAGTTCGC
261 ATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCGC
22909649 CTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGT
326 CTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGT
22909714 GTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCC
391 GTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCC
22909779 G-GACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTC
456 GAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTC
22909843 TTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTAT-GGGGACTTTGTATTTCTTAAGGTAT
521 TTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAT
22909907 CTCCGTGGAAAAAGGTTCTACG
586 CTCCGTGGAAAAAGGTTCTACG
22909929 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
1 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
22909994 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGTTCCAATTTCAATAATCTCTGATATGGA
66 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGTTCCAATTTCAATAATCTCTGATATGGA
22910059 TCCTCTCTTCACTTCAC-GTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTCA
131 TCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTCA
22910123 GTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATATG
196 GTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATATG
22910188 ATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGA-TTTTTACCGTTAGTTGAGTTCGC
261 ATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCGC
22910252 CTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGT
326 CTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGT
22910317 GTCATACTCT-TTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCC
391 GTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCC
22910381 GAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTC
456 GAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTC
22910446 TTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAT
521 TTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAT
22910511 CTCCGTGG-AAAAGGTTCTACG
586 CTCCGTGGAAAAAGGTTCTACG
22910532 GTTCGGTT-ACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
1 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
22910596 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGATTCCAATTTCAATAATCTCTGATATGG
66 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGG-TTCCAATTTCAATAATCTCTGATATGG
22910661 ATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCT-GGTTCGAGATTGGACTTC
130 ATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTC
22910725 AGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATAT
195 AGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATAT
22910790 GATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCG
260 GATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCG
22910855 CCTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAG
325 CCTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAG
22910920 TGTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTC
390 TGTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTC
22910985 CGAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGT
455 CGAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGT
22911050 CTTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTA
520 CTTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTA
22911115 -CTCCGTGG-AAAAGGTTCTACG
585 TCTCCGTGGAAAAAGGTTCTACG
*
22911136 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCAGCAAAAGTTAGT
1 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
22911201 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGAGTTCCAATTTCAATAATCTCTGATATGG
66 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGG-GTTCCAATTTCAATAATCTCTGATATGG
22911266 ATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTC
130 ATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTC
22911331 AGT-CTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATAT
195 AGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATAT
*
22911395 GATTTGGAGCTATGTGATTTATTTCTGAGGTAGTT-GGAGGA-TTTTTACCGTTAGTTGAGTTCA
260 GATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCG
22911458 CCTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAG
325 CCTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAG
22911523 TGTCATACTCTGTTATATTAGACT-AGTTGGGTGAGC-ACGGGTTTTGGGTCCTGAGTTGGTTTC
390 TGTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTC
22911586 CG-GACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAG-
455 CGAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGT
22911649 CTTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTAT-GGGGACTTTGTATTTCTTAAGGTA
520 CTTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTA
22911713 TCTCCGTGG-AAAAGGTTCTACG
585 TCTCCGTGGAAAAAGGTTCTACG
22911735 GTTCGGTTGACCAAGT-CGCTCATTTTATTCCTTTTCA-ATGGACTACTCTCTGCAAAAGTTAGT
1 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
*
22911798 GAAGCTCTACATTTCTGA-ATTGTAAGACTGCATGGATTCCAATTTCAATAATCTCTGATATGGA
66 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGTTCCAATTTCAATAATCTCTGATATGGA
22911862 TCCTCTCTTCACTTCAC-GTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTCA
131 TCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTCA
22911926 GTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGA-TCATATACTAGAGGATATG
196 GTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATATG
*
22911990 ATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGA-TTTTTACCGTTAGTTGACTTCGC
261 ATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCGC
22912054 CTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGT
326 CTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGT
22912119 GTCATACTCT-TTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCC
391 GTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCC
22912183 GAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTC
456 GAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTC
22912248 TTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAT
521 TTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAT
22912313 CTCCGTGGAAAAAGGTTCTACG
586 CTCCGTGGAAAAAGGTTCTACG
22912335 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
1 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
22912400 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGAGTTCCAATTTCAATAATCTCTGATATGG
66 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGG-GTTCCAATTTCAATAATCTCTGATATGG
22912465 ATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTC
130 ATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTC
22912530 AGTA-TGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATAT
195 AGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATAT
22912594 GATTTGGAGCTATGTGATTTATTTCTGAGGTAGTT-GGAGGATTTTTTACCGTTAGTTGAGTTCG
260 GATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCG
22912658 CCTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAG
325 CCTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAG
22912723 TGTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTC
390 TGTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTC
22912788 CGAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGT
455 CGAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGT
22912853 CTTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTAT-GGGGACTTTGTATTTCTTAAGGTA
520 CTTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTA
22912917 --TCCGTGGAAAAAGGTTCTACG
585 TCTCCGTGGAAAAAGGTTCTACG
22912938 GTTC-GTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTC-GCAAAAGTTAGT
1 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
22913001 GAAGCTCTACATTTC-GAGATTGTAAGACTGCATGGGTTCCAATTTCAATAATCTCTGATATGGA
66 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGTTCCAATTTCAATAATCTCTGATATGGA
22913065 TCCTCTCTTCACTTCAC-GTTCTAGAAGAAACTTCACAA-GCTCTGGGTTCGAGATT-GACTTCA
131 TCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTCA
22913127 GTACTGCGTTCCATCCTCAGA-CGATGGTCAATTTGAGAGGGTGATTCATATACTA-AGGATATG
196 GTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATATG
*
22913190 ATTTGGAGCTATGTGATTTATTTCTGAGGTAGTT-GGAGGA-TTTTTACCGTTAGTTGAGTTCAC
261 ATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCGC
22913253 CTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGT
326 CTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGT
*
22913318 GTCATACTCT-TTATATTAGACT-AGTTGGGTGAGCAACGGGTTTTGGGTCCTGAG-TGGTTTCC
391 GTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCC
22913380 G-GACTGAAGATAATGTTAGACTAATTT-GGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTC
456 GAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTC
22913443 TTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTAT-GGGGACTTTGTATTTCTTAAGGTAT
521 TTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAT
22913507 CTCCGTGGAAAAAGGTTCTACG
586 CTCCGTGGAAAAAGGTTCTACG
22913529 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCA-ATGGACTACTCTCTGCAAAAGTTAGT
1 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
* *
22913593 GAAGCTCTACATTTCTGA-ATTGTAAGACTGCATGGATTCCAATTTCAGTAATCTCTGATATGGA
66 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGTTCCAATTTCAATAATCTCTGATATGGA
22913657 TCCTCTCTTCACTTCA--GTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTCA
131 TCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTCA
*
22913720 GTACTGCGTTCCATCCTCAGACTGATGGTCAATTTGAGAGGGTGATTCATAT-CTAGAGGATATG
196 GTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATATG
22913784 ATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCGC
261 ATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCGC
22913849 CTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGT
326 CTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGT
22913914 GTCATACTC--TT-TATTAGACT-AGTTGGGTGAGC-AC-GGTTTTGGGTCCTGAGTTGGTTTCC
391 GTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCC
22913973 GAGACTGAAGATAATGTTAGACTAATTT-GGATCGTCTGAA-GCGTCTTCTGATAGATAGAAGTC
456 GAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTC
22914036 TTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTAT-GGGGACTTTGTATTTCTTAAGGTAT
521 TTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAT
22914100 CTCCGTGG-AAAAGGTTCTACG
586 CTCCGTGGAAAAAGGTTCTACG
22914121 GTTCGG-TGACCAAGTCCGCTCA-TTTATTCCTTTTCA-ATGGACTACTCTCTGC-AAAGTTAGT
1 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
* *
22914182 GAAGCTCTACATTTCTGATATTGTAAGACTGCATGGATTCCAATTTC-ATAATCTCTGATAT-GA
66 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGTTCCAATTTCAATAATCTCTGATATGGA
22914245 TCCTCTCTTCACTTCA--GTTCTAGAAGAAACTTCAC-AGGCTCT-GGTTCGAGATTGGACTTCA
131 TCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTCA
*
22914306 GTACTGCGTTCCATCCTCAGACTGATGGTCAATTTGAGAGGGTGATTCATATACTAGA-GATATG
196 GTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATATG
* *
22914370 ATTTGGAGCTATGTGATTTATTTCTGAGGTAGTT-GGAGGATTTTTTACCGTTAGTTGACTTCGT
261 ATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCGC
22914434 CTACAATAACAGTTTCCAATCTAGCATCTAGA-GGCACCTTACGAGGCTCTATATGGTCATAAGT
326 CTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGT
22914498 GTCATACTCT-TTATATTAGACTGAGTTGGGTGAGCGAC-GGTTTTGGGTCCTGAGTTGGTTTCC
391 GTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCC
*
22914561 GAGACT-AAGATAATGTTAGTCTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTC
456 GAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTC
*
22914625 TTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTCTATTTCTTAAGGTAT
521 TTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAT
22914690 CTCCGTGGAAAAAGGTTCTACG
586 CTCCGTGGAAAAAGGTTCTACG
*
22914712 GTTCGGTTAACCAAGTCCGCTCATTTT-TTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
1 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
*
22914776 GAAGCTCTACATTTCTGAGATTGTAAGACTTCATGGGGTTCCAATTTCAATAATCTCTGATATGG
66 GAAGCTCTACATTTCTGAGATTGTAAGACTGCAT-GGGTTCCAATTTCAATAATCTCTGATATGG
*
22914841 ATCCTCTCTTCACTTCATGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTC
130 ATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTC
* *
22914906 AGTTCTGCGTTCCATCCTCAGACCGATGGTTAATTTGAGAGGGTGATTCATATACTAGAGGATAT
195 AGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATAT
*
22914971 GATTTGGAGCTATGTGATTTATTTCTGAGTTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCG
260 GATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCG
* * * *
22915036 CCTACCATAGCAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTATATATGGTCACAAG
325 CCTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAG
22915101 TGTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTC
390 TGTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTC
*
22915166 CGAGACTGAAGATAATGTTAGACTAATTTTGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGT
455 CGAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGT
22915231 CTTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTA
520 CTTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTA
22915296 TCTCCGTGGAAAAAGGTTCTACG
585 TCTCCGTGGAAAAAGGTTCTACG
* * *
22915319 GTTCGGATGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCCGCAAAAGTTTGT
1 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
*
22915384 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGAGTTCCAATTTCAATAATCTCTGATATAG
66 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGG-GTTCCAATTTCAATAATCTCTGATATGG
22915449 ATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTC
130 ATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTC
*
22915514 AGTACTGCGTTCCATCCTCAAACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATAT
195 AGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATAT
*
22915579 GATTTGGAGCTATGTGATTTATTTCTGAGGTATTTGGGAGGATTTTTTACCGTTAGTTGAGTTCG
260 GATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCG
22915644 CCTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAG
325 CCTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAG
*
22915709 TGTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGAAGGGTTTTGGGTCCTGAGTTGGTTTC
390 TGTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTC
* *
22915774 CGAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCCGAAGGCTTCTTCTGATAGATAGAAGT
455 CGAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGT
*
22915839 CTTATGCAAATCTGAAAATCTGAGATATCAAGTACTCTAT-GGGGACTTTGTATTTCTTAAGGGT
520 CTTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAA-GGT
22915903 A--TCCGTGGAAAAAGGTTCTACG
584 ATCTCCGTGGAAAAAGGTTCTACG
* * *
22915925 GTTCGATTAACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCAGCAAAAGTTAGT
1 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
*
22915990 GAAGCTCTACATTTCCGAGATTGTAAGACTGCATGGAGTTCCAATTTCAATAATCTCTGATATGG
66 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGG-GTTCCAATTTCAATAATCTCTGATATGG
*
22916055 ATCCTCTCTTCACTTCACGCTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTC
130 ATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTC
**
22916120 AGTGTTGCGTTCCATCCTCAGACCGATGGTCAATTTG-GAGGGTGATTCATATACTAGAGGATAT
195 AGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATAT
* *
22916184 GATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGAGAGGATTTTTTACCGTTAGTTGAGTTCA
260 GATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCG
22916249 CCTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAG
325 CCTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAG
* * * * * *
22916314 TGTCATACTCTGTTATATTCGACTAAGTTGGGTGAGCAACGGGTTTTTGGACCTGAGATGGTTTC
390 TGTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTC
* * *
22916379 CGGGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTTTGATAGATAGAAGC
455 CGAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGT
* *
22916444 CTTATACAAATCTGAAAATCAGAGATATCAAGTACTCTATCGGGGACTTTGTATTTCTTAAGGTA
520 CTTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTA
22916509 TCTCCGTGGAAAAAGGTTCTACG
585 TCTCCGTGGAAAAAGGTTCTACG
*
22916532 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCGGATGGACTACTCTCTGCAAAAGTTAGT
1 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
* *
22916597 GAAGCTCTACATTTCTAAGATTGTAAGACTGCATGGCGTTCCAATTTCAATAATCTCTGATGTGG
66 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGG-GTTCCAATTTCAATAATCTCTGATATGG
* * * *
22916662 ATTCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTAGCTTCGAGATTGTACTTC
130 ATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTC
* * * * *
22916727 AGTACTGCGTTCTATCATTAGACCGATGGTAAATTTGAGTGGGTGATTCATATACTAGAGGATAT
195 AGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATAT
** *
22916792 GATTTGGAGCTATACGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGACTTCG
260 GATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCG
*
22916857 CCTACAATAACAGTTCCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAG
325 CCTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAG
* * * *
22916922 TATCATACTCTATTATATTAGACCGAGTTGGGTGAGGGACGGGTTTTGGGTCCTGAGTTGGTTTC
390 TGTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTC
* *
22916987 CGAGACTGAAGATAATGTTAGACTAATTTTGGATCGTCTGAAGGCGTCTTCTGATAGATAGTAGT
455 CGAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGT
*
22917052 CTTATGCAAATCTGAAAATCAGATATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTA
520 CTTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTA
*
22917117 TCTCCGTGGAAAAAGGTTCTACT
585 TCTCCGTGGAAAAAGGTTCTACG
* *
22917140 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTAATCTCCGCAAAAGTTAGT
1 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
*
22917205 GAAGCTCTACATTTCTGAGATTGTAAGACTTCATGGAGTTCCAATTTCAATAATCTCTGATATGG
66 GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGG-GTTCCAATTTCAATAATCTCTGATATGG
*
22917270 ATCCTCTCTTCACTTCACGCTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTC
130 ATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTC
*
22917335 AGTACTGCGTTCCATCCTCAGACCAATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATAT
195 AGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATAT
* * *
22917400 GATTTGGAGCTATGTGATTTATTTTTGAGGTAGTTGGGAGCATTTTTTACCGTTAGTTTAGTTCG
260 GATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCG
* *
22917465 CCTACAATAATAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCCCTATATGGTCATAAG
325 CCTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAG
*
22917530 TGTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACAGGTTTTGGGTCCTGAGTTGGTTTC
390 TGTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTC
*
22917595 CGAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCT-ATTAGATAAAAG
455 CGAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGA-TAGATAGAAG
* * * *
22917659 TCTTATGCAAGTCT-AAATATCAGAGATATCGAGTACTCTTTGGGGGACTTTGTATTTCTGAAGG
519 TCTTATGCAAATCTGAAA-ATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGG
*
22917723 TATCTCCGTGGAAAAAGGTTCTACA
583 TATCTCCGTGGAAAAAGGTTCTACG
* * * *
22917748 GTTCGGTTGACCAAGTCCACTCATTTTATTCCTGTTCTGATGGACTACTCTCTGTAAAAGTTAGT
1 GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
* *
22917813 GAAGCTCTACATTTCTCAGATTGTAAGACTGCATGGGGTTCCAATTTCAATAATCTCTGATGTGG
66 GAAGCTCTACATTTCTGAGATTGTAAGACTGCAT-GGGTTCCAATTTCAATAATCTCTGATATGG
*
22917878 ATCCTCTCTTCACTTCATGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTC
130 ATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTC
*
22917943 AGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGTTAT
195 AGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATAT
22918008 GATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCG
260 GATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCG
*
22918073 CCTACAATAGCAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAG
325 CCTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAG
22918138 TGTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTC
390 TGTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTC
*
22918203 CGAGACTGAGGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGT
455 CGAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGT
* * *
22918268 CTTATGGAAATCTGAAAATCAGAGATATCAAGTACTCTATGGAGGACTTTGTATTTCCTAAGGTA
520 CTTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTA
22918333 TCTCCGTGGAAAAAGGTTCTACG
585 TCTCCGTGGAAAAAGGTTCTACG
22918356 GTTCGGTTG
1 GTTCGGTTG
22918365 TAAGGACAAG
Statistics
Matches: 16458, Mismatches: 211, Indels: 328
0.97 0.01 0.02
Matches are distributed among these distances:
563 3 0.00
564 13 0.00
565 14 0.00
566 34 0.00
567 12 0.00
568 7 0.00
569 4 0.00
570 1 0.00
571 7 0.00
572 2 0.00
573 11 0.00
574 30 0.00
575 8 0.00
576 5 0.00
577 1 0.00
578 20 0.00
579 9 0.00
580 72 0.00
581 34 0.00
582 139 0.01
583 80 0.00
584 388 0.02
585 200 0.01
586 185 0.01
587 105 0.01
588 207 0.01
589 252 0.02
590 176 0.01
591 138 0.01
592 256 0.02
593 211 0.01
594 410 0.02
595 345 0.02
596 294 0.02
597 245 0.01
598 242 0.01
599 297 0.02
600 417 0.03
601 417 0.03
602 401 0.02
603 1011 0.06
604 1367 0.08
605 3011 0.18
606 2023 0.12
607 1346 0.08
608 2002 0.12
609 6 0.00
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.34
Consensus pattern (607 bp):
GTTCGGTTGACCAAGTCCGCTCATTTTATTCCTTTTCAGATGGACTACTCTCTGCAAAAGTTAGT
GAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGTTCCAATTTCAATAATCTCTGATATGGA
TCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCGAGATTGGACTTCA
GTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATATACTAGAGGATATG
ATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGAGTTCGC
CTACAATAACAGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGT
GTCATACTCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCC
GAGACTGAAGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTC
TTATGCAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAT
CTCCGTGGAAAAAGGTTCTACG
Found at i:22924527 original size:27 final size:27
Alignment explanation
Indices: 22924496--22924554 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
22924486 TCATTGACTG
*
22924496 TCTTTGTAATTTGTTCATTTAATCTCA
1 TCTTTGTAATTTCTTCATTTAATCTCA
* **
22924523 TCTTTTTTGTTTCTTCATTTAATCTCA
1 TCTTTGTAATTTCTTCATTTAATCTCA
22924550 TCTTT
1 TCTTT
22924555 TTTATTTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.17, C:0.17, G:0.05, T:0.61
Consensus pattern (27 bp):
TCTTTGTAATTTCTTCATTTAATCTCA
Found at i:22925665 original size:85 final size:85
Alignment explanation
Indices: 22925543--22925702 Score: 257
Period size: 85 Copynumber: 1.9 Consensus size: 85
22925533 ACCGAGTGGC
* * * * *
22925543 AGTTTGTTTAATTTGCAAATATGTTGTGCACCTACAACAAGTGGCAATAACTGCAAGTATGTGGT
1 AGTTTATTTAATCTGCAAATATGTTGTACACCCACAACAAGTGGCAATAACTGCAAATATGTGGT
22925608 TCGATCACGAATTAAATGGT
66 TCGATCACGAATTAAATGGT
*
22925628 AGTTTATTTAATCTGTAAATATGTTGTACACCCACAACAAGTGGCAATAACTGCAAATATGTGGT
1 AGTTTATTTAATCTGCAAATATGTTGTACACCCACAACAAGTGGCAATAACTGCAAATATGTGGT
*
22925693 TCGATTACGA
66 TCGATCACGA
22925703 GCCAAGAGGC
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
85 68 1.00
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33
Consensus pattern (85 bp):
AGTTTATTTAATCTGCAAATATGTTGTACACCCACAACAAGTGGCAATAACTGCAAATATGTGGT
TCGATCACGAATTAAATGGT
Found at i:22927887 original size:44 final size:42
Alignment explanation
Indices: 22927837--22927951 Score: 124
Period size: 43 Copynumber: 2.7 Consensus size: 42
22927827 TGAGTATTTG
*
22927837 TGTAAGAACACATCTGGGACATTGGCATCGA-TTTGAGGTTTACA
1 TGTAAGAACACGTCTGGGACATTGGCATCGAGTTTGA---TTACA
* ** *
22927881 TGTAAGATCTTGTCTGGGACAGTGGCATCGATGTTTGATTACA
1 TGTAAGAACACGTCTGGGACATTGGCATCGA-GTTTGATTACA
* *
22927924 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGAACACGTCTGGGACATTGGCAT
22927952 TGTACGAGCT
Statistics
Matches: 59, Mismatches: 10, Indels: 5
0.80 0.14 0.07
Matches are distributed among these distances:
43 28 0.47
44 26 0.44
46 5 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (42 bp):
TGTAAGAACACGTCTGGGACATTGGCATCGAGTTTGATTACA
Found at i:22928725 original size:6 final size:6
Alignment explanation
Indices: 22928716--22928745 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
22928706 TAAATATACA
*
22928716 TATATG TATATG TATATG TATATG TCTATG
1 TATATG TATATG TATATG TATATG TATATG
22928746 ATAAGATCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.30, C:0.03, G:0.17, T:0.50
Consensus pattern (6 bp):
TATATG
Found at i:22940939 original size:20 final size:20
Alignment explanation
Indices: 22940895--22940972 Score: 75
Period size: 20 Copynumber: 3.9 Consensus size: 20
22940885 TCAATACCAA
* * *
22940895 GATAAAGGTTTCAATACTAT
1 GATAAAAGTATCAATACTTT
* * *
22940915 AATAAAAATATCGATACTTT
1 GATAAAAGTATCAATACTTT
* *
22940935 GATAAATGTGTCAATACTTT
1 GATAAAAGTATCAATACTTT
*
22940955 GAGAAAAGTATCAATACT
1 GATAAAAGTATCAATACT
22940973 ATAAGCAATG
Statistics
Matches: 44, Mismatches: 14, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.44, C:0.10, G:0.13, T:0.33
Consensus pattern (20 bp):
GATAAAAGTATCAATACTTT
Found at i:22940972 original size:40 final size:40
Alignment explanation
Indices: 22940895--22940972 Score: 93
Period size: 40 Copynumber: 1.9 Consensus size: 40
22940885 TCAATACCAA
* * *
22940895 GATAAAGGTTTCAATACTATAATAAAAATATCGATACTTT
1 GATAAAGGTGTCAATACTATAAGAAAAATATCAATACTTT
* * * *
22940935 GATAAATGTGTCAATACTTTGAGAAAAGTATCAATACT
1 GATAAAGGTGTCAATACTATAAGAAAAATATCAATACT
22940973 ATAAGCAATG
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.44, C:0.10, G:0.13, T:0.33
Consensus pattern (40 bp):
GATAAAGGTGTCAATACTATAAGAAAAATATCAATACTTT
Found at i:22940985 original size:20 final size:20
Alignment explanation
Indices: 22940905--22940985 Score: 54
Period size: 20 Copynumber: 4.0 Consensus size: 20
22940895 GATAAAGGTT
* **
22940905 TCAATACTATAATAAAAATA
1 TCAATACTATAAGAAATGTA
* * * * *
22940925 TCGATACTTTGATAAATGTG
1 TCAATACTATAAGAAATGTA
* * *
22940945 TCAATACTTTGAGAAAAGTA
1 TCAATACTATAAGAAATGTA
*
22940965 TCAATACTATAAGCAATGTA
1 TCAATACTATAAGAAATGTA
22940985 T
1 T
22940986 AGATACTTTA
Statistics
Matches: 47, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.44, C:0.11, G:0.11, T:0.33
Consensus pattern (20 bp):
TCAATACTATAAGAAATGTA
Found at i:22943629 original size:27 final size:27
Alignment explanation
Indices: 22943598--22943802 Score: 232
Period size: 27 Copynumber: 7.6 Consensus size: 27
22943588 ACCGAGAATT
22943598 CATAAGGTAAAATGACCGAAATACCCC
1 CATAAGGTAAAATGACCGAAATACCCC
* **
22943625 CATAAGGTAAAATGATCGAAATACCTT
1 CATAAGGTAAAATGACCGAAATACCCC
* * *
22943652 CATAGGGTAAAATAACCAAAATACCCC
1 CATAAGGTAAAATGACCGAAATACCCC
* *
22943679 TATAAGGTAAAATCACCGAAATACCCC
1 CATAAGGTAAAATGACCGAAATACCCC
* * * *
22943706 TATAGGGTAAAATGATCGAAATACCCT
1 CATAAGGTAAAATGACCGAAATACCCC
* * *
22943733 CATAGGGTAAAATGATCAAAATACCCC
1 CATAAGGTAAAATGACCGAAATACCCC
*
22943760 CA-GAGGATAAAATGACCGAAATACCCC
1 CATAAGG-TAAAATGACCGAAATACCCC
* *
22943787 TATAGGGTAAAATGAC
1 CATAAGGTAAAATGAC
22943803 TGTTATACCC
Statistics
Matches: 149, Mismatches: 27, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
26 2 0.01
27 145 0.97
28 2 0.01
ACGTcount: A:0.44, C:0.21, G:0.16, T:0.19
Consensus pattern (27 bp):
CATAAGGTAAAATGACCGAAATACCCC
Found at i:22943812 original size:81 final size:81
Alignment explanation
Indices: 22943598--22943801 Score: 320
Period size: 81 Copynumber: 2.5 Consensus size: 81
22943588 ACCGAGAATT
* * *
22943598 CATAAGGTAAAATGACCGAAATACCCCCATAAGGTAAAATGATCGAAATACCTTCATAGGGTAAA
1 CATAAGGTAAAATGACCGAAATACCCCTATAGGGTAAAATGATCGAAATACCCTCATAGGGTAAA
22943663 ATAACCAAAATACCCC
66 ATAACCAAAATACCCC
* *
22943679 TATAAGGTAAAATCACCGAAATACCCCTATAGGGTAAAATGATCGAAATACCCTCATAGGGTAAA
1 CATAAGGTAAAATGACCGAAATACCCCTATAGGGTAAAATGATCGAAATACCCTCATAGGGTAAA
* *
22943744 ATGATCAAAATACCCC
66 ATAACCAAAATACCCC
*
22943760 CA-GAGGATAAAATGACCGAAATACCCCTATAGGGTAAAATGA
1 CATAAGG-TAAAATGACCGAAATACCCCTATAGGGTAAAATGA
22943802 CTGTTATACC
Statistics
Matches: 112, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
80 3 0.03
81 109 0.97
ACGTcount: A:0.45, C:0.21, G:0.16, T:0.19
Consensus pattern (81 bp):
CATAAGGTAAAATGACCGAAATACCCCTATAGGGTAAAATGATCGAAATACCCTCATAGGGTAAA
ATAACCAAAATACCCC
Found at i:22943813 original size:54 final size:54
Alignment explanation
Indices: 22943598--22943801 Score: 257
Period size: 54 Copynumber: 3.8 Consensus size: 54
22943588 ACCGAGAATT
* * **
22943598 CATAAGGTAAAATGACCGAAATACCCCCATAAGGTAAAATGATCGAAATACCTT
1 CATAGGGTAAAATGACCGAAATACCCCTATAAGGTAAAATGATCGAAATACCCC
* * * *
22943652 CATAGGGTAAAATAACCAAAATACCCCTATAAGGTAAAATCACCGAAATACCCC
1 CATAGGGTAAAATGACCGAAATACCCCTATAAGGTAAAATGATCGAAATACCCC
* * * *
22943706 TATAGGGTAAAATGATCGAAATA-CCCTCATAGGGTAAAATGATCAAAATACCCC
1 CATAGGGTAAAATGACCGAAATACCCCT-ATAAGGTAAAATGATCGAAATACCCC
* * *
22943760 CAGAGGATAAAATGACCGAAATACCCCTATAGGGTAAAATGA
1 CATAGGGTAAAATGACCGAAATACCCCTATAAGGTAAAATGA
22943802 CTGTTATACC
Statistics
Matches: 128, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
53 4 0.03
54 120 0.94
55 4 0.03
ACGTcount: A:0.45, C:0.21, G:0.16, T:0.19
Consensus pattern (54 bp):
CATAGGGTAAAATGACCGAAATACCCCTATAAGGTAAAATGATCGAAATACCCC
Found at i:22947759 original size:45 final size:41
Alignment explanation
Indices: 22947708--22947805 Score: 108
Period size: 45 Copynumber: 2.3 Consensus size: 41
22947698 ATATGTGGTC
*
22947708 TCGTGTAAGACCACATCTGGGACGA-TGGCATCGATATATGTGAT
1 TCGTGTAAGACCACATCTAGGAC-ATTGGCATCG-TAT-T-TGAT
* **
22947752 TATGTGTAAGACCATGTCTAGGACATTGGCATCGTATTTGAT
1 T-CGTGTAAGACCACATCTAGGACATTGGCATCGTATTTGAT
22947794 TCGTGTAAGACC
1 TCGTGTAAGACC
22947806 CTGTCCGAGA
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
41 10 0.21
42 5 0.11
43 1 0.02
44 5 0.11
45 26 0.55
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.31
Consensus pattern (41 bp):
TCGTGTAAGACCACATCTAGGACATTGGCATCGTATTTGAT
Found at i:22949941 original size:35 final size:35
Alignment explanation
Indices: 22949890--22949960 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
22949880 GAATAGAAGA
*
22949890 TAAGATGAATGGCAAAGCATACACATGTTTTGTAC
1 TAAGATGAATGCCAAAGCATACACATGTTTTGTAC
22949925 TAAGATGAATGCCAAAGCATACACATGTTTTGTAC
1 TAAGATGAATGCCAAAGCATACACATGTTTTGTAC
22949960 T
1 T
22949961 TAAATGGGAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (35 bp):
TAAGATGAATGCCAAAGCATACACATGTTTTGTAC
Found at i:22952353 original size:31 final size:31
Alignment explanation
Indices: 22952273--22952346 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 31
22952263 CTATTTTATA
* * *
22952273 TTTACTCTCTCGATGGAATATCTATTCCGTG
1 TTTACTATCTCGATGGACTATCTATTCAGTG
* *
22952304 TTCACTATCTTGATGGACTATCTATTCAGTG
1 TTTACTATCTCGATGGACTATCTATTCAGTG
*
22952335 TTTACTGTCTCG
1 TTTACTATCTCG
22952347 GCGGACTTCA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.19, C:0.22, G:0.16, T:0.43
Consensus pattern (31 bp):
TTTACTATCTCGATGGACTATCTATTCAGTG
Found at i:22971667 original size:19 final size:19
Alignment explanation
Indices: 22971594--22971665 Score: 101
Period size: 19 Copynumber: 3.7 Consensus size: 19
22971584 AAAAATTACA
22971594 AAAAATTCAAAATAATTTT
1 AAAAATTCAAAATAATTTT
22971613 CAAAAATTCAAAATAATTTT
1 -AAAAATTCAAAATAATTTT
**
22971633 AAATTTTCAAAAT-ATTTAT
1 AAAAATTCAAAATAATTT-T
22971652 AAAAATTCAAAATA
1 AAAAATTCAAAATA
22971666 TTGTATTTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
18 4 0.09
19 23 0.50
20 19 0.41
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAAATTCAAAATAATTTT
Found at i:22974329 original size:42 final size:42
Alignment explanation
Indices: 22974283--22974364 Score: 164
Period size: 42 Copynumber: 2.0 Consensus size: 42
22974273 AATAAAAGAA
22974283 AGGAAAAAAGGAACAAGCATACAAATTATAGAATGATTTACT
1 AGGAAAAAAGGAACAAGCATACAAATTATAGAATGATTTACT
22974325 AGGAAAAAAGGAACAAGCATACAAATTATAGAATGATTTA
1 AGGAAAAAAGGAACAAGCATACAAATTATAGAATGATTTA
22974365 TTAATAGGCA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.54, C:0.09, G:0.17, T:0.21
Consensus pattern (42 bp):
AGGAAAAAAGGAACAAGCATACAAATTATAGAATGATTTACT
Found at i:22980265 original size:3 final size:3
Alignment explanation
Indices: 22980259--22980310 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
22980249 AGCAGGACTT
22980259 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
22980307 TTA T
1 TTA T
22980311 CATCATCATC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:22984505 original size:31 final size:31
Alignment explanation
Indices: 22984430--22984525 Score: 124
Period size: 30 Copynumber: 3.0 Consensus size: 31
22984420 CCAAATATAA
*
22984430 TAAATATATTTTTTTTATTTTTAAAA-ATATTT
1 TAAA-ATACTTTTTTTATTTTTAAAATAT-TTT
22984462 TAAAATAC-TTTTTTATTTTTAAAATATTTT
1 TAAAATACTTTTTTTATTTTTAAAATATTTT
*
22984492 TAAAATACTTTTTTTAATTTTCTAAAATTTTTT
1 TAAAATACTTTTTTT-ATTTT-TAAAATATTTT
22984525 T
1 T
22984526 TGGTGTTTAT
Statistics
Matches: 58, Mismatches: 2, Indels: 7
0.87 0.03 0.10
Matches are distributed among these distances:
30 27 0.47
31 11 0.19
32 9 0.16
33 11 0.19
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.61
Consensus pattern (31 bp):
TAAAATACTTTTTTTATTTTTAAAATATTTT
Found at i:22984512 original size:21 final size:20
Alignment explanation
Indices: 22984487--22984526 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
22984477 TTTTTAAAAT
22984487 ATTTT-TAAAATACTTTTTTTA
1 ATTTTCTAAAAT--TTTTTTTA
22984508 ATTTTCTAAAATTTTTTTT
1 ATTTTCTAAAATTTTTTTT
22984527 GGTGTTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 5 0.28
22 6 0.33
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (20 bp):
ATTTTCTAAAATTTTTTTTA
Found at i:22995726 original size:6 final size:6
Alignment explanation
Indices: 22995715--22995743 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
22995705 TTTTCTTCTC
22995715 CCTCTA CCTCTA CCTCTA CCTCTA CCTCT
1 CCTCTA CCTCTA CCTCTA CCTCTA CCTCT
22995744 CGAGTCCCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.14, C:0.52, G:0.00, T:0.34
Consensus pattern (6 bp):
CCTCTA
Found at i:22995760 original size:16 final size:16
Alignment explanation
Indices: 22995739--22995771 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
22995729 TCTACCTCTA
22995739 CCTCTCGAGTCCCCTT
1 CCTCTCGAGTCCCCTT
22995755 CCTCTCGAGTCCCCTT
1 CCTCTCGAGTCCCCTT
22995771 C
1 C
22995772 TTCTACAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.06, C:0.52, G:0.12, T:0.30
Consensus pattern (16 bp):
CCTCTCGAGTCCCCTT
Found at i:22998264 original size:18 final size:18
Alignment explanation
Indices: 22998241--22998275 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
22998231 AACATTATTT
22998241 AAATAA-ATAATCAAATAG
1 AAATAAGAT-ATCAAATAG
22998259 AAATAAGATATCAAATA
1 AAATAAGATATCAAATA
22998276 CAATCAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.66, C:0.06, G:0.06, T:0.23
Consensus pattern (18 bp):
AAATAAGATATCAAATAG
Found at i:23005562 original size:12 final size:12
Alignment explanation
Indices: 23005547--23005590 Score: 74
Period size: 12 Copynumber: 3.8 Consensus size: 12
23005537 AAAACGAGCC
23005547 ATAAATATTTTT
1 ATAAATATTTTT
23005559 ATAAATA--TTT
1 ATAAATATTTTT
23005569 ATAAATATTTTT
1 ATAAATATTTTT
23005581 ATAAATATTT
1 ATAAATATTT
23005591 ACGGAGTGTC
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
10 10 0.33
12 20 0.67
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (12 bp):
ATAAATATTTTT
Found at i:23005571 original size:10 final size:10
Alignment explanation
Indices: 23005556--23005591 Score: 54
Period size: 10 Copynumber: 3.4 Consensus size: 10
23005546 CATAAATATT
23005556 TTTATAAATA
1 TTTATAAATA
23005566 TTTATAAATA
1 TTTATAAATA
23005576 TTTTTATAAATA
1 --TTTATAAATA
23005588 TTTA
1 TTTA
23005592 CGGAGTGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 14 0.58
12 10 0.42
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (10 bp):
TTTATAAATA
Found at i:23005575 original size:22 final size:22
Alignment explanation
Indices: 23005547--23005591 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
23005537 AAAACGAGCC
23005547 ATAAATATTTTTATAAATATTT
1 ATAAATATTTTTATAAATATTT
23005569 ATAAATATTTTTATAAATATTT
1 ATAAATATTTTTATAAATATTT
23005591 A
1 A
23005592 CGGAGTGTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
ATAAATATTTTTATAAATATTT
Found at i:23014480 original size:37 final size:35
Alignment explanation
Indices: 23014411--23014491 Score: 94
Period size: 37 Copynumber: 2.3 Consensus size: 35
23014401 GTGACACAAG
23014411 TTTAGCTCGGACAAGTAACCTGATGTCATTATAAATA
1 TTTAGCTCGGACAAGTAACCTGATGTCATTAT--ATA
**
23014448 TTTAGCTCGGACAAGTAAGTTGACATG-C-TTATATA
1 TTTAGCTCGGACAAGTAACCTG--ATGTCATTATATA
23014483 TTTAGCTCG
1 TTTAGCTCG
23014492 TACGACCAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
35 12 0.30
37 24 0.60
38 1 0.03
39 3 0.08
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.35
Consensus pattern (35 bp):
TTTAGCTCGGACAAGTAACCTGATGTCATTATATA
Found at i:23016060 original size:15 final size:16
Alignment explanation
Indices: 23016030--23016062 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
23016020 TCTTCATAAT
23016030 TAAAATATCATAAATAG
1 TAAAATAT-ATAAATAG
23016047 TAAAATAT-TAAATAG
1 TAAAATATATAAATAG
23016062 T
1 T
23016063 CATCAATAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.33
Consensus pattern (16 bp):
TAAAATATATAAATAG
Done.