Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 77 of 222
Found at i:23741285 original size:19 final size:19
Alignment explanation
Indices: 23741261--23741299 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
23741251 TGCTACTCAT
23741261 ATTTTTA-AAAACTTATCAG
1 ATTTTTAGAAAACTTA-CAG
*
23741280 ATTTTTAGAACACTTACAG
1 ATTTTTAGAAAACTTACAG
23741299 A
1 A
23741300 ATCGGCGTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.41, C:0.13, G:0.08, T:0.38
Consensus pattern (19 bp):
ATTTTTAGAAAACTTACAG
Found at i:23747735 original size:117 final size:113
Alignment explanation
Indices: 23747525--23747743 Score: 312
Period size: 117 Copynumber: 1.9 Consensus size: 113
23747515 TATGTCAATG
* *
23747525 AGCATTGGGTGCACTTTACTTCGGACGTTTCGATGAGGTACTGGGTGCCAAATGATTACTTCGAC
1 AGCATTGGGTGCACTTTACTTCGGACGTTCCGATGAGGCACTGGGTGCCAAATGATTACTTCGAC
** * *
23747590 TACGTGCCCCTGAGTGCTGGACATAATTTTTACTTCAGTCAACCGATA
66 TACGTGCCAATGAGTGCTAGACACAATTTTTACTTCAGTCAACCGATA
* *
23747638 AGCATTGGGTGCAAACTACTTACTTCGGAGGTTCCGATGAGGCACTGGGTGTCAAATGATTACTT
1 AGCATTGGGTGC--ACT--TTACTTCGGACGTTCCGATGAGGCACTGGGTGCCAAATGATTACTT
* *
23747703 CGACTATGTGTCAATGAGTGCTAGACACAATTTTTACTTCA
62 CGACTACGTGCCAATGAGTGCTAGACACAATTTTTACTTCA
23747744 ATTGAGCGTT
Statistics
Matches: 92, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
113 12 0.13
115 3 0.03
117 77 0.84
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.31
Consensus pattern (113 bp):
AGCATTGGGTGCACTTTACTTCGGACGTTCCGATGAGGCACTGGGTGCCAAATGATTACTTCGAC
TACGTGCCAATGAGTGCTAGACACAATTTTTACTTCAGTCAACCGATA
Found at i:23747808 original size:110 final size:111
Alignment explanation
Indices: 23747557--23747852 Score: 315
Period size: 110 Copynumber: 2.6 Consensus size: 111
23747547 GGACGTTTCG
* * ** *
23747557 ATGAGGTACTGGGTGCCAAATGATTACTTCGACTACGTGCCCCTGAGTGCTGGACATAATTTTTA
1 ATGAGGCACTGGGTGCCAAATGATTACTTCGACTACGTGTCAATGAGTGCTGGACACAATTTTTA
* * * ** *
23747622 CTTCAGTCAACCGATAAGCATTGGGTGCAAACTACTTACTTCGGAGGTTCCG
66 C-T---TCAA-C-ATAAGCATTGGGCGCAAACTAATTACTTCGAACATTCCA
* * *
23747674 ATGAGGCACTGGGTGTCAAATGATTACTTCGACTATGTGTCAATGAGTGCTAGACACAATTTTTA
1 ATGAGGCACTGGGTGCCAAATGATTACTTCGACTACGTGTCAATGAGTGCTGGACACAATTTTTA
* * * * *
23747739 CTTCAA-TTGAGCGTTGGGCGCAAATTAATTACTTTGAACATTCCA
66 CTTCAACATAAGCATTGGGCGCAAACTAATTACTTCGAACATTCCA
* * * * *
23747784 ATGAGGCACTGGGTGCCAAATGATTACTTCGACTACGTATCGATGAGTGTTGGGCACAATTTGTA
1 ATGAGGCACTGGGTGCCAAATGATTACTTCGACTACGTGTCAATGAGTGCTGGACACAATTTTTA
23747849 CTTC
66 CTTC
23747853 GGTCATACTG
Statistics
Matches: 152, Mismatches: 27, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
110 89 0.59
113 4 0.03
116 1 0.01
117 58 0.38
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (111 bp):
ATGAGGCACTGGGTGCCAAATGATTACTTCGACTACGTGTCAATGAGTGCTGGACACAATTTTTA
CTTCAACATAAGCATTGGGCGCAAACTAATTACTTCGAACATTCCA
Found at i:23756240 original size:24 final size:23
Alignment explanation
Indices: 23756181--23756243 Score: 63
Period size: 24 Copynumber: 2.7 Consensus size: 23
23756171 TATTCAAAAA
*
23756181 TTAATAAAATTTTAAAAATATAT
1 TTAATTAAATTTTAAAAATATAT
* * * *
23756204 TTAGTTACTATTTTATATATATATT
1 TTAATTA-AATTTTAAAAATATA-T
23756229 TTAATTAAATTTTAA
1 TTAATTAAATTTTAA
23756244 TTTAAAAATA
Statistics
Matches: 30, Mismatches: 8, Indels: 3
0.73 0.20 0.07
Matches are distributed among these distances:
23 5 0.17
24 18 0.60
25 7 0.23
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (23 bp):
TTAATTAAATTTTAAAAATATAT
Found at i:23761959 original size:17 final size:18
Alignment explanation
Indices: 23761939--23761972 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
23761929 TCCTTTTTGT
*
23761939 ATTTTATTTCC-TTTTAA
1 ATTTTATCTCCATTTTAA
23761956 ATTTTATCTCCATTTTA
1 ATTTTATCTCCATTTTA
23761973 TTTCTGTTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.24, C:0.15, G:0.00, T:0.62
Consensus pattern (18 bp):
ATTTTATCTCCATTTTAA
Found at i:23762323 original size:24 final size:24
Alignment explanation
Indices: 23762270--23762339 Score: 72
Period size: 24 Copynumber: 3.0 Consensus size: 24
23762260 TAAAATCGTT
**
23762270 TAATTTATTATATTTTATTATCTTA
1 TAATTTATTATACATTATTAT-TTA
* *
23762295 -GATTTATTATGCATTATTATTTA
1 TAATTTATTATACATTATTATTTA
*
23762318 TAATTTATCA-ACATTATTATTT
1 TAATTTATTATACATTATTATTT
23762340 TAAATTCATC
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
23 14 0.38
24 23 0.62
ACGTcount: A:0.33, C:0.06, G:0.03, T:0.59
Consensus pattern (24 bp):
TAATTTATTATACATTATTATTTA
Found at i:23768583 original size:13 final size:13
Alignment explanation
Indices: 23768565--23768596 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
23768555 AGCAGGATTG
23768565 AAGAATTGAAAAA
1 AAGAATTGAAAAA
23768578 AAGAATTGAAAAA
1 AAGAATTGAAAAA
23768591 AAGAAT
1 AAGAAT
23768597 AGAAGAGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.69, C:0.00, G:0.16, T:0.16
Consensus pattern (13 bp):
AAGAATTGAAAAA
Found at i:23772932 original size:38 final size:38
Alignment explanation
Indices: 23772889--23772965 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
23772879 ACATGTGTTT
23772889 AGAGGGATCTCATGACTTTGAAGATAACATAGATCATA
1 AGAGGGATCTCATGACTTTGAAGATAACATAGATCATA
23772927 AGAGGGATCTCATGACTTTGAAGATAACATAGATCATA
1 AGAGGGATCTCATGACTTTGAAGATAACATAGATCATA
23772965 A
1 A
23772966 CCTATCTCCG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.40, C:0.13, G:0.21, T:0.26
Consensus pattern (38 bp):
AGAGGGATCTCATGACTTTGAAGATAACATAGATCATA
Found at i:23777326 original size:24 final size:24
Alignment explanation
Indices: 23777291--23777342 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
23777281 AAAAGCACAA
*
23777291 TGGATTGGACCTTGAAGATTACAG
1 TGGATTGAACCTTGAAGATTACAG
23777315 TGGATTGAACCTTGAAGATTACAG
1 TGGATTGAACCTTGAAGATTACAG
23777339 TGGA
1 TGGA
23777343 GGCAATCCGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.31, C:0.12, G:0.29, T:0.29
Consensus pattern (24 bp):
TGGATTGAACCTTGAAGATTACAG
Found at i:23777891 original size:44 final size:44
Alignment explanation
Indices: 23777843--23778034 Score: 134
Period size: 44 Copynumber: 4.5 Consensus size: 44
23777833 AAACTAATCC
* *
23777843 TATCTTCCTGAAGTTACAGTGGAGCAAATTAAAACCACAGATCT
1 TATCTTCCTGAAGTTGCAGTGGAGCAAATTAAAATCACAGATCT
* * *
23777887 TATC-TCTCTGAAGTTGCAG-AGAGCAAA-TCACATCA-AG-TCT
1 TATCTTC-CTGAAGTTGCAGTGGAGCAAATTAAAATCACAGATCT
* * *
23777927 TATCTCCCTGAAGTTGCAGTAGG-GCAGACTGAATGAA-C-CA-ATCT
1 TATCTTCCTGAAGTTGCAGT-GGAGCA-AATTAA--AATCACAGATCT
* ** * *
23777971 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATGATAGATCT
1 TATCTTCCTGAAGTTGCAGTGGAGCAAATTAAAATCACAGATCT
*
23778015 TATC-TCTCTGAAGTTCCAGT
1 TATCTTC-CTGAAGTTGCAGT
23778035 AAAATAGATC
Statistics
Matches: 114, Mismatches: 19, Indels: 30
0.70 0.12 0.18
Matches are distributed among these distances:
40 19 0.17
41 8 0.07
42 7 0.06
43 17 0.15
44 62 0.54
45 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.29
Consensus pattern (44 bp):
TATCTTCCTGAAGTTGCAGTGGAGCAAATTAAAATCACAGATCT
Found at i:23777975 original size:128 final size:128
Alignment explanation
Indices: 23777796--23778029 Score: 319
Period size: 128 Copynumber: 1.8 Consensus size: 128
23777786 AGATGGCGAA
* * * * *
23777796 TCTTATTTCCCTGAAGTTGTAATGGAGCAGATTGAAGAAACTAATCCTATCTTCCTGAAGTTACA
1 TCTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGAAACCAATCCTATCTCCCTGAAGTTACA
23777861 GTGGAGCAAATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGAGAGCAAATCACATCAAG
66 GTGGAGCAAATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGAGAGCAAATCACATCAAG
* * *
23777924 TCTTATCTCCCTGAAGTTGCAGTAGG-GCAGACTGAATG-AACCAATCTTATCTCCCTGAAGTTG
1 TCTTATCTCCCTGAAGTTGCAAT-GGAGCAGACTGAA-GAAACCAATCCTATCTCCCTGAAGTTA
** ** *
23777987 CAGTGGAGCGGATTAAAATGATAGATCTTATCTCTCTGAAGTT
64 CAGTGGAGCAAATTAAAACCACAGATCTTATCTCTCTGAAGTT
23778030 CCAGTAAAAT
Statistics
Matches: 91, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
128 88 0.97
129 3 0.03
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (128 bp):
TCTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGAAACCAATCCTATCTCCCTGAAGTTACA
GTGGAGCAAATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGAGAGCAAATCACATCAAG
Found at i:23781879 original size:14 final size:14
Alignment explanation
Indices: 23781860--23781889 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
23781850 TACACTATAT
23781860 AAACCTAAAATTAA
1 AAACCTAAAATTAA
23781874 AAACCTAAAATTAA
1 AAACCTAAAATTAA
23781888 AA
1 AA
23781890 GCCATCAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.67, C:0.13, G:0.00, T:0.20
Consensus pattern (14 bp):
AAACCTAAAATTAA
Found at i:23782001 original size:3 final size:3
Alignment explanation
Indices: 23781993--23782024 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
23781983 TTTAGTCCTC
23781993 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
23782025 TTGCAATTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:23787747 original size:22 final size:22
Alignment explanation
Indices: 23787703--23787748 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 22
23787693 TGGCGGCTAT
* *
23787703 GAAGAAAAGAGAGGAAGAGGAA
1 GAAGAAAAAAGAAGAAGAGGAA
23787725 GAAGAAAAAAAGAAGAAGA-GAA
1 GAAG-AAAAAAGAAGAAGAGGAA
23787747 GA
1 GA
23787749 TAGGAGAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (22 bp):
GAAGAAAAAAGAAGAAGAGGAA
Found at i:23787944 original size:21 final size:21
Alignment explanation
Indices: 23787919--23787968 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
23787909 TGAAAGTGTT
* *
23787919 GATACTTTTTAGAAAGATATC
1 GATACTTGTTAGAAAGATAAC
*
23787940 GATACTTGTTAGAAAGGTAAC
1 GATACTTGTTAGAAAGATAAC
23787961 GATACTTG
1 GATACTTG
23787969 CATAAGTATC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34
Consensus pattern (21 bp):
GATACTTGTTAGAAAGATAAC
Found at i:23791853 original size:33 final size:33
Alignment explanation
Indices: 23791816--23791882 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
23791806 TTTTTTGGTG
23791816 TGAATTTTTTTACATAATTAAATATTTTTATTT
1 TGAATTTTTTTACATAATTAAATATTTTTATTT
**
23791849 TGAATTTTTTTAGTTAATTAAATATTTTTATTT
1 TGAATTTTTTTACATAATTAAATATTTTTATTT
23791882 T
1 T
23791883 TATTTATTTC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.31, C:0.01, G:0.04, T:0.63
Consensus pattern (33 bp):
TGAATTTTTTTACATAATTAAATATTTTTATTT
Found at i:23792456 original size:21 final size:21
Alignment explanation
Indices: 23792430--23792477 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
23792420 CAAGACATGG
*
23792430 CCGTGTGGCTACTTCACACGC
1 CCGTGTGACTACTTCACACGC
* *
23792451 CCGTGTGACTACTTCATATGC
1 CCGTGTGACTACTTCACACGC
23792472 CCGTGT
1 CCGTGT
23792478 ACGCTAACTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.15, C:0.33, G:0.23, T:0.29
Consensus pattern (21 bp):
CCGTGTGACTACTTCACACGC
Found at i:23795429 original size:51 final size:50
Alignment explanation
Indices: 23795236--23795580 Score: 336
Period size: 51 Copynumber: 6.8 Consensus size: 50
23795226 ACTTTTATCA
* *
23795236 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAG-TT
1 TTCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGCTT
* * *
23795285 TTACGGTTCACGTAGTAGCCTTCACATAGTACTACACATGTGATCAAG-TT
1 TT-CGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGCTT
* * *
23795335 TTACGGTTCATGTAATAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
1 TT-CGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACC-AAGCTT
* * * * * *
23795387 TTCAGTACACATACTAGCCTTCACTTAGTACTACACATGTGACC-ATCATT
1 TTCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGC-TT
* * * *
23795437 TATCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTAACCAAAGCTT
1 T-TCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACC-AAGCTT
* ** * * * * ***
23795489 CTCGGTACATATTGTAGCATTCACTTAGTACTACACATGTGACCATTATT
1 TTCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGCTT
* *
23795539 TATCGATACATGTAGTAGCCTTCACATAGTACTACACACGTG
1 T-TCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTG
23795581 TTCATCGATA
Statistics
Matches: 242, Mismatches: 46, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
49 4 0.02
50 91 0.38
51 139 0.57
52 6 0.02
53 2 0.01
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (50 bp):
TTCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGCTT
Found at i:23795483 original size:102 final size:102
Alignment explanation
Indices: 23795237--23795580 Score: 451
Period size: 102 Copynumber: 3.4 Consensus size: 102
23795227 CTTTTATCAT
* * *
23795237 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AAG-TTTTACGGTTCACGTAG
1 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTT-CGGTACACATAG
* * ***
23795300 TAGCCTTCACATAGTACTACACATGTGATCAAGTTTTA
65 TAGCCTTCACTTAGTACTACACATGTGACCATCATTTA
* * * * * *
23795338 -CGGTTCATGTAATAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTTCAGTACACATACT
1 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGT
23795402 AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
66 AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
* * * * * *
23795439 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTAACCAAAGCTTCTCGGTACATATTGT
1 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGT
* *
23795504 AGCATTCACTTAGTACTACACATGTGACCATTATTTA
66 AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
*
23795541 TCGATACATGTAGTAGCCTTCACATAGTACTACACACGTG
1 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTG
23795581 TTCATCGATA
Statistics
Matches: 210, Mismatches: 30, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
100 37 0.18
101 44 0.21
102 129 0.61
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (102 bp):
TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGT
AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
Found at i:23804529 original size:49 final size:50
Alignment explanation
Indices: 23804437--23804534 Score: 126
Period size: 49 Copynumber: 2.0 Consensus size: 50
23804427 ATCTATTTAT
* * * * * * *
23804437 AGGTTGAAAAAACTTTATTTTGATCAATGTCAAATAGATGAAGTGTAGTA
1 AGGTTGAAAAAACCTTATTCTAATCAATGTAAAATAAAAGAAGTATAGTA
23804487 AGGTTG-AAAAACCTTATTCTAATCAATGTAAAATAAAAGAAGTATAGT
1 AGGTTGAAAAAACCTTATTCTAATCAATGTAAAATAAAAGAAGTATAGT
23804535 TCTATATGAA
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
49 35 0.85
50 6 0.15
ACGTcount: A:0.44, C:0.07, G:0.17, T:0.32
Consensus pattern (50 bp):
AGGTTGAAAAAACCTTATTCTAATCAATGTAAAATAAAAGAAGTATAGTA
Found at i:23811381 original size:21 final size:21
Alignment explanation
Indices: 23811350--23811406 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 21
23811340 TGTCCCATCC
23811350 CCTTCTATTTTCTCTCAATTTT
1 CCTTCTATTTTCTC-CAATTTT
*
23811372 CCTTC-ATTTTCTCCCATTTT
1 CCTTCTATTTTCTCCAATTTT
*
23811392 CTTTCCTTATTTTCT
1 CCTT-C-TATTTTCT
23811407 TTTCACCCTT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
20 9 0.30
21 9 0.30
22 5 0.17
23 7 0.23
ACGTcount: A:0.11, C:0.30, G:0.00, T:0.60
Consensus pattern (21 bp):
CCTTCTATTTTCTCCAATTTT
Found at i:23811444 original size:3 final size:3
Alignment explanation
Indices: 23811436--23811468 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
23811426 CTTTGTGTTC
*
23811436 TCT TCT TCT TCT TTT TCT TCT TCT T-T TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
23811469 GCCGAATTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (3 bp):
TCT
Found at i:23811455 original size:12 final size:11
Alignment explanation
Indices: 23811433--23811468 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
23811423 CCCCTTTGTG
*
23811433 TTCTCTTCTTC
1 TTCTTTTCTTC
23811444 TTCTTTTTCTTC
1 TTC-TTTTCTTC
23811456 TTCTTTTCTTC
1 TTCTTTTCTTC
23811467 TT
1 TT
23811469 GCCGAATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 13 0.57
12 10 0.43
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (11 bp):
TTCTTTTCTTC
Found at i:23812140 original size:37 final size:37
Alignment explanation
Indices: 23812073--23812169 Score: 131
Period size: 37 Copynumber: 2.6 Consensus size: 37
23812063 ATAATATTAA
* * *
23812073 TGAATGCATGATTAAGCATGCCACTGAAATTGTTAAAC
1 TGAAAGCATGA-TAAGCATGCCACTAAAATTATTAAAC
* * *
23812111 TGGAAGCATGATAAGCCTGCTACTAAAATTATTAAAC
1 TGAAAGCATGATAAGCATGCCACTAAAATTATTAAAC
23812148 TGAAAGCATGATAAGCATGCCA
1 TGAAAGCATGATAAGCATGCCA
23812170 TTGATATTGG
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
37 41 0.82
38 9 0.18
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (37 bp):
TGAAAGCATGATAAGCATGCCACTAAAATTATTAAAC
Found at i:23823556 original size:25 final size:24
Alignment explanation
Indices: 23823504--23823575 Score: 58
Period size: 25 Copynumber: 2.9 Consensus size: 24
23823494 TCCTGTACAT
23823504 GTATGCT-TATACGAGCTCTGAAT-TG
1 GTATGCTCT-TACGAG--CTGAATATG
23823529 GTATGCTCTTACGAGCTGAATATCG
1 GTATGCTCTTACGAGCTGAATAT-G
* * **
23823554 GTAAGCTCATGTGAGCTGAATA
1 GTATGCTCTTACGAGCTGAATA
23823576 ACGATAAGCT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
23 6 0.15
24 1 0.03
25 32 0.80
26 1 0.03
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (24 bp):
GTATGCTCTTACGAGCTGAATATG
Found at i:23825150 original size:18 final size:18
Alignment explanation
Indices: 23825127--23825162 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
23825117 TTGAGGATGC
* *
23825127 TGATTGTAGTTCTCTTGT
1 TGATTGTAATTCCCTTGT
23825145 TGATTGTAATTCCCTTGT
1 TGATTGTAATTCCCTTGT
23825163 CACAGATTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.14, C:0.14, G:0.19, T:0.53
Consensus pattern (18 bp):
TGATTGTAATTCCCTTGT
Found at i:23833382 original size:3 final size:3
Alignment explanation
Indices: 23833374--23833406 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
23833364 GATACTCTCA
23833374 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
23833407 ACATTTTGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:23849969 original size:88 final size:87
Alignment explanation
Indices: 23849820--23850322 Score: 464
Period size: 88 Copynumber: 5.7 Consensus size: 87
23849810 TTGAGTTGTT
* * * * *
23849820 ATTTAAGATCACAACCTTCAAACTTCAAAGATTTTGATAATCATAGAGTTAGTGATTTAAGATCA
1 ATTTAAGATCGCAACCTTCAAACTTCAAGGATTTT-AGAATCTTAGAGTTAGAGATTTAAGATCA
23849885 CGACTCCTCTTTAAGGTTTGCTG
65 CGACTCCTCTTTAAGGTTTGCTG
* * * * *
23849908 ATTTAAGATTGCAACCTTCAAAATCCAAGAATATTTAGAATCTTAGAGTTAGAGGTTTAAGATCA
1 ATTTAAGATCGCAACCTTCAAACTTCAAGGAT-TTTAGAATCTTAGAGTTAGAGATTTAAGATCA
* * **
23849973 CGAGTCCCCTTTAAGGTTTGCCA
65 CGACTCCTCTTTAAGGTTTGCTG
* * * *
23849996 ATTTAAGATCACAACCTTCAAACTTCAAGGATTTTTAGAATCTTAGACTTA-ACGATTTAAAATT
1 ATTTAAGATCGCAACCTTCAAACTTCAAGGA-TTTTAGAATCTTAGAGTTAGA-GATTTAAGATC
* * **
23850060 GCAACT-CTCCTTTAAGGTTCACTG
64 ACGACTCCT-CTTTAAGGTTTGCTG
* *
23850084 ATTTAAGATCGCAACCTTCAAACTTTAAGGATTTTCAGAATCTTAGCGTTAGCA-ATTTAAGAT-
1 ATTTAAGATCGCAACCTTCAAACTTCAAGGATTTT-AGAATCTTAGAGTTAG-AGATTTAAGATC
* *
23850147 ATGGACT-TTCATTTAAGG-TT-CATCG
64 A-CGACTCCTC-TTTAAGGTTTGC-T-G
* * * * * *
23850172 ATTTAAAATCGCAACCTTTAAAATTCAAGGATTTTCAGAATCTTAGAGTTAGCGATTTAACATCG
1 ATTTAAGATCGCAACCTTCAAACTTCAAGGATTTT-AGAATCTTAGAGTTAGAGATTTAAGATCA
* *
23850237 TGACTCC-CTTTTAAGGTTTGCCG
65 CGACTCCTC-TTTAAGGTTTGCTG
* * * * *
23850260 ATTTAAGATCACAACCTTTCAAACTTCAAAGATTTTTAGAATTTTAGTGTTAGCGATTTAAGA
1 ATTTAAGATCGCAACC-TTCAAACTTCAAGGA-TTTTAGAATCTTAGAGTTAGAGATTTAAGA
23850323 ATATCATTTC
Statistics
Matches: 336, Mismatches: 61, Indels: 35
0.78 0.14 0.08
Matches are distributed among these distances:
86 1 0.00
87 9 0.03
88 279 0.83
89 41 0.12
90 6 0.02
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (87 bp):
ATTTAAGATCGCAACCTTCAAACTTCAAGGATTTTAGAATCTTAGAGTTAGAGATTTAAGATCAC
GACTCCTCTTTAAGGTTTGCTG
Found at i:23850126 original size:176 final size:174
Alignment explanation
Indices: 23849820--23850327 Score: 534
Period size: 176 Copynumber: 2.9 Consensus size: 174
23849810 TTGAGTTGTT
* * * * * * *
23849820 ATTTAAGATCACAACCTTCAAACTTCAAAGATTTTGATAATCATAGAGTTAGTGATTTAAGATCA
1 ATTTAAGATCACAACCTTCAAACTTCAAGGATTTTCAGAATCTTAGAGTTAGCGATTTAAAATCG
* * * *
23849885 CGACTCCTCTTTAAGGTTTGCTGATTTAAGATTGCAACCTTCAAAATCCAAGAATATTTAGAATC
66 CGACTCC-CTTTAAGGTTTGCTGATTTAAGATCGCAACCTTCAAACTTCAAGGAT-TTTAGAATC
* * * **
23849950 TTAGAGTTAGAGGTTTAAGATCA-CGAGTCCCCTTTAAGGTTTGCCA
129 TTAGAGTTAGAGATTTAAGAT-ATCGACTCCCATTTAAGGTTCACCA
* * * *
23849996 ATTTAAGATCACAACCTTCAAACTTCAAGGATTTTTAGAATCTTAGACTTAACGATTTAAAATTG
1 ATTTAAGATCACAACCTTCAAACTTCAAGGATTTTCAGAATCTTAGAGTTAGCGATTTAAAATCG
* ** *
23850061 CAACTCTCCTTTAAGGTTCACTGATTTAAGATCGCAACCTTCAAACTTTAAGGATTTTCAGAATC
66 CGACTC-CCTTTAAGGTTTGCTGATTTAAGATCGCAACCTTCAAACTTCAAGGATTTT-AGAATC
* * ** * *
23850126 TTAGCGTTAGCA-ATTTAAGATATGGACTTTCATTTAAGGTTCATCG
129 TTAGAGTTAG-AGATTTAAGATATCGACTCCCATTTAAGGTTCACCA
* * * * *
23850172 ATTTAAAATCGCAACCTTTAAAATTCAAGGATTTTCAGAATCTTAGAGTTAGCGATTTAACATCG
1 ATTTAAGATCACAACCTTCAAACTTCAAGGATTTTCAGAATCTTAGAGTTAGCGATTTAAAATCG
* * * *
23850237 TGACTCCCTTTTAAGGTTTGCCGATTTAAGATCACAACCTTTCAAACTTCAAAGATTTTTAGAAT
66 CGACTCCC-TTTAAGGTTTGCTGATTTAAGATCGCAACC-TTCAAACTTCAAGGA-TTTTAGAAT
* * *
23850302 TTTAGTGTTAGCGATTTAAGAATATC
128 CTTAGAGTTAGAGATTTAAG-ATATC
23850328 ATTTCCCATA
Statistics
Matches: 273, Mismatches: 50, Indels: 16
0.81 0.15 0.05
Matches are distributed among these distances:
175 6 0.02
176 223 0.82
177 36 0.13
178 8 0.03
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (174 bp):
ATTTAAGATCACAACCTTCAAACTTCAAGGATTTTCAGAATCTTAGAGTTAGCGATTTAAAATCG
CGACTCCCTTTAAGGTTTGCTGATTTAAGATCGCAACCTTCAAACTTCAAGGATTTTAGAATCTT
AGAGTTAGAGATTTAAGATATCGACTCCCATTTAAGGTTCACCA
Found at i:23861099 original size:25 final size:25
Alignment explanation
Indices: 23861071--23861132 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
23861061 CCACAGCTCC
**
23861071 CATGAGCTTCCTC-TTATTCAACTTG
1 CATGAGCTTCC-CGTTATTCAACTCA
* *
23861096 CATGAACTTCCCGTTATTCAGCTCA
1 CATGAGCTTCCCGTTATTCAACTCA
23861121 CATGAGCTTCCC
1 CATGAGCTTCCC
23861133 ATTTACAGCT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
24 1 0.03
25 30 0.97
ACGTcount: A:0.21, C:0.32, G:0.13, T:0.34
Consensus pattern (25 bp):
CATGAGCTTCCCGTTATTCAACTCA
Found at i:23868172 original size:25 final size:25
Alignment explanation
Indices: 23868143--23868219 Score: 93
Period size: 25 Copynumber: 3.1 Consensus size: 25
23868133 CACACCACAG
*
23868143 CTCGCATGAGCTTCCTGTTATTCAA
1 CTCGCATGAGCTTCCCGTTATTCAA
* *
23868168 CTCGCACGAGCTTCCCGTTATTCAG
1 CTCGCATGAGCTTCCCGTTATTCAA
* * *
23868193 CTCACATGAGCTTCTCGTT-TACAA
1 CTCGCATGAGCTTCCCGTTATTCAA
23868217 CTC
1 CTC
23868220 ATATGAGCAT
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
24 6 0.14
25 38 0.86
ACGTcount: A:0.19, C:0.32, G:0.16, T:0.32
Consensus pattern (25 bp):
CTCGCATGAGCTTCCCGTTATTCAA
Found at i:23869966 original size:15 final size:14
Alignment explanation
Indices: 23869932--23869970 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
23869922 TCGATTCATT
23869932 TTTAATAAAATTAA
1 TTTAATAAAATTAA
* *
23869946 TATAATAACATTTAA
1 TTTAATAA-AATTAA
23869961 TTTAATAAAA
1 TTTAATAAAA
23869971 AAATATACAT
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
14 8 0.40
15 12 0.60
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (14 bp):
TTTAATAAAATTAA
Found at i:23874655 original size:20 final size:20
Alignment explanation
Indices: 23874630--23874672 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
23874620 ATAAACAACT
23874630 TAACTAACTTTTCAAATGAA
1 TAACTAACTTTTCAAATGAA
23874650 TAACTAACTTTTCAAATGAA
1 TAACTAACTTTTCAAATGAA
23874670 TAA
1 TAA
23874673 TTCTTTCTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.47, C:0.14, G:0.05, T:0.35
Consensus pattern (20 bp):
TAACTAACTTTTCAAATGAA
Found at i:23881659 original size:17 final size:18
Alignment explanation
Indices: 23881632--23881666 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
23881622 GTAGGTTTGT
*
23881632 AAAAATAGAAATGGAAAC
1 AAAAATAGAAATGAAAAC
23881650 AAAAAT-GAAATGAAAAC
1 AAAAATAGAAATGAAAAC
23881667 TTGCAATCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.69, C:0.06, G:0.14, T:0.11
Consensus pattern (18 bp):
AAAAATAGAAATGAAAAC
Found at i:23882540 original size:3 final size:3
Alignment explanation
Indices: 23882526--23882576 Score: 93
Period size: 3 Copynumber: 16.7 Consensus size: 3
23882516 TTAAAGGGGG
23882526 TTC TTAC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TT-C TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
23882572 TTC TT
1 TTC TT
23882577 ATTTCTTTTC
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 44 0.94
4 3 0.06
ACGTcount: A:0.02, C:0.31, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:23883263 original size:28 final size:28
Alignment explanation
Indices: 23883225--23883283 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
23883215 ACACGATAGG
23883225 AAAGAATAGTCTTTGTGGCA-AAATTTGA
1 AAAGAATAGTCTTTGTGG-AGAAATTTGA
*
23883253 AAAGAATAGTCTTTGTGGAGAACTTTGA
1 AAAGAATAGTCTTTGTGGAGAAATTTGA
23883281 AAA
1 AAA
23883284 AAAATATCCT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 1 0.03
28 28 0.97
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.31
Consensus pattern (28 bp):
AAAGAATAGTCTTTGTGGAGAAATTTGA
Found at i:23884396 original size:26 final size:26
Alignment explanation
Indices: 23884367--23884422 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
23884357 TCCTGACTCG
* *
23884367 TTTT-TTGATTTAATTCATTTTTTTAT
1 TTTTCTTG-TTTAATTCAGTTATTTAT
* *
23884393 TTTTCTTGTTTATTTTAGTTATTTAT
1 TTTTCTTGTTTAATTCAGTTATTTAT
23884419 TTTT
1 TTTT
23884423 ATCTAATTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.16, C:0.04, G:0.05, T:0.75
Consensus pattern (26 bp):
TTTTCTTGTTTAATTCAGTTATTTAT
Found at i:23890229 original size:35 final size:35
Alignment explanation
Indices: 23890165--23890236 Score: 90
Period size: 35 Copynumber: 2.1 Consensus size: 35
23890155 GGTGTTACAT
* ** * *
23890165 ACCAAATGCTCATAAGAGCTAGTATCATCCAGCAC
1 ACCAAATGCTCATAAGAGCCAAAACCATCCAACAC
*
23890200 ACCAGATGCTCATAAGAGCCAAAACCATCCAACAC
1 ACCAAATGCTCATAAGAGCCAAAACCATCCAACAC
23890235 AC
1 AC
23890237 TAGAAACACT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.40, C:0.32, G:0.12, T:0.15
Consensus pattern (35 bp):
ACCAAATGCTCATAAGAGCCAAAACCATCCAACAC
Found at i:23891557 original size:20 final size:20
Alignment explanation
Indices: 23891532--23891570 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
23891522 AGCCCAAAAG
23891532 TTAGTGGATTTAATTATGTA
1 TTAGTGGATTTAATTATGTA
23891552 TTAGTGGATTTAATTATGT
1 TTAGTGGATTTAATTATGT
23891571 CACCACCGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.51
Consensus pattern (20 bp):
TTAGTGGATTTAATTATGTA
Found at i:23894551 original size:23 final size:23
Alignment explanation
Indices: 23894520--23894570 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
23894510 ACCTACTTTC
* *
23894520 TTACTGTAGTAATTTTCGGGGTA
1 TTACAGTAGTAATTTTCGGGATA
23894543 TTACAGTAGTAATTTTCGGGATA
1 TTACAGTAGTAATTTTCGGGATA
23894566 TTACA
1 TTACA
23894571 AAGGCATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.27, C:0.10, G:0.22, T:0.41
Consensus pattern (23 bp):
TTACAGTAGTAATTTTCGGGATA
Found at i:23895913 original size:18 final size:19
Alignment explanation
Indices: 23895874--23895913 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
23895864 ATGATAAAAT
*
23895874 ATTATATGAAATAACAATA
1 ATTATATGAAATAACAAGA
*
23895893 ATTATAT-AAATAATAAGA
1 ATTATATGAAATAACAAGA
23895911 ATT
1 ATT
23895914 TCAATTATCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (19 bp):
ATTATATGAAATAACAAGA
Found at i:23896421 original size:102 final size:95
Alignment explanation
Indices: 23896302--23896571 Score: 274
Period size: 102 Copynumber: 2.7 Consensus size: 95
23896292 TTTGGGACAC
* * *
23896302 TGATGGTCGGTATCAGTGTATTTTAAAATAAAATTAGGTGTAGGCCATGTAATGGTCGGCACCAA
1 TGATGGTCGGCACCAGTGTATTTTAAAA-AAAATT-GGTGT-GGCCATGTAATGG-CAGCACCAA
* *
23896367 GTACAATTTTGGCTCCCAATGCATTTTTTTGGAACAT
62 GTACAATTTCGACTCCCAATG--TTTTTTT-GAACAT
* *
23896404 TGCTAGG-CGGCACCAGTGTA-TTTAAAAAACAATTTGGGTGCTGGCCATGTAATGGCCTGCACC
1 TGAT-GGTCGGCACCAGTGTATTTTAAAAAA-AA-TT-GGTG-TGGCCATGTAATGG-CAGCACC
* *
23896467 AAGTACAATTTCGACTCTCAATGTTTTTTTTAACAT
60 AAGTACAATTTCGACTCCCAATGTTTTTTTGAACAT
* * *
23896503 TGATGGTCGGCACCAGTGTATTTCAAAAAAAAATTGGTACTGCCCATGTAATGGCTAGCACCAAG
1 TGATGGTCGGCACCAGTGTATTT-TAAAAAAAATTGGT-GTGGCCATGTAATGGC-AGCACCAAG
23896568 TACA
63 TACA
23896572 TTTAATTAAA
Statistics
Matches: 144, Mismatches: 15, Indels: 22
0.80 0.08 0.12
Matches are distributed among these distances:
97 1 0.01
98 30 0.21
99 23 0.16
100 13 0.09
101 15 0.10
102 59 0.41
103 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.31
Consensus pattern (95 bp):
TGATGGTCGGCACCAGTGTATTTTAAAAAAAATTGGTGTGGCCATGTAATGGCAGCACCAAGTAC
AATTTCGACTCCCAATGTTTTTTTGAACAT
Found at i:23897688 original size:90 final size:91
Alignment explanation
Indices: 23897512--23897718 Score: 308
Period size: 90 Copynumber: 2.3 Consensus size: 91
23897502 AAAAATACCC
* * * * * *
23897512 TAGTACCGGCCAATGGATTCACAAACTCAAAAAAATTATTTTTTTTAAAGCCTGACTCAATCATC
1 TAGTGCCGGCCATTGGGTTCCCAAACTCAAAAAAATTA-TTTTTTTAAAGCCTGACACAATCAAC
*
23897577 AGGCAATAATGAGGCCAAAACACTAGG
65 AGGCAATAATGAGGACAAAACACTAGG
*
23897604 TAGTGCCGGTCATTGGGTTCCCAAACTCAAAAAAATTA-TTTTTTAAAGCCTGACACAATCAACA
1 TAGTGCCGGCCATTGGGTTCCCAAACTCAAAAAAATTATTTTTTTAAAGCCTGACACAATCAACA
* *
23897668 GGCAATCATGGGGACAAAACACTAGG
66 GGCAATAATGAGGACAAAACACTAGG
23897694 TAGTGCCGGCCATTGGGTTCCCAAA
1 TAGTGCCGGCCATTGGGTTCCCAAA
23897719 ACCTAAATTT
Statistics
Matches: 104, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
90 71 0.68
92 33 0.32
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.24
Consensus pattern (91 bp):
TAGTGCCGGCCATTGGGTTCCCAAACTCAAAAAAATTATTTTTTTAAAGCCTGACACAATCAACA
GGCAATAATGAGGACAAAACACTAGG
Found at i:23903857 original size:15 final size:16
Alignment explanation
Indices: 23903831--23903861 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
23903821 AATAAAAATA
23903831 ATTATAATTATTTTAT
1 ATTATAATTATTTTAT
23903847 ATTAT-ATTATTTTAT
1 ATTATAATTATTTTAT
23903862 TAATAGTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
ATTATAATTATTTTAT
Found at i:23903878 original size:49 final size:52
Alignment explanation
Indices: 23903809--23903911 Score: 142
Period size: 49 Copynumber: 2.0 Consensus size: 52
23903799 TGATAAAATA
23903809 TTATTAATATAAAATAAAAATAATTATAATTAT-TTTATATTA-T-ATTATT
1 TTATTAATATAAAATAAAAATAATTATAATTATCTTTATATTATTAATTATT
* * *
23903858 TTATTAATAGTAATAT-AAAATAATTTTAATTATCTTTATTTTATTAATTATT
1 TTATTAATA-TAAAATAAAAATAATTATAATTATCTTTATATTATTAATTATT
23903910 TT
1 TT
23903912 TCATTTTTTG
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
49 25 0.53
50 13 0.28
51 1 0.02
52 8 0.17
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (52 bp):
TTATTAATATAAAATAAAAATAATTATAATTATCTTTATATTATTAATTATT
Found at i:23903906 original size:18 final size:19
Alignment explanation
Indices: 23903883--23903918 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
23903873 TAAAATAATT
23903883 TTAATTATCTTT-ATTTTA
1 TTAATTATCTTTCATTTTA
*
23903901 TTAATTATTTTTCATTTT
1 TTAATTATCTTTCATTTT
23903919 TTGTATTACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.69
Consensus pattern (19 bp):
TTAATTATCTTTCATTTTA
Found at i:23904507 original size:19 final size:19
Alignment explanation
Indices: 23904485--23904534 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
23904475 CCAAAATACC
23904485 GATCCTCCTCCAGTCCACA
1 GATCCTCCTCCAGTCCACA
*
23904504 GATCCTCCTCCAGTCCACT
1 GATCCTCCTCCAGTCCACA
*
23904523 GATCCACCTCCA
1 GATCCTCCTCCA
23904535 CCGATCCACC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.20, C:0.48, G:0.10, T:0.22
Consensus pattern (19 bp):
GATCCTCCTCCAGTCCACA
Found at i:23904756 original size:40 final size:41
Alignment explanation
Indices: 23904697--23904796 Score: 139
Period size: 44 Copynumber: 2.4 Consensus size: 41
23904687 GATTCCCTTC
*
23904697 CATTTTCTGTCT-GCTTGTTTCTGGTTAATCCGGGTAACTT
1 CATTTTCTGTTTGGCTTGTTTCTGGTTAATCCGGGTAACTT
* *
23904737 CATTTTCTGTTTGGCTGTTTGTTTTTGGTTAATCTGGGTAACTT
1 CATTTTCTGTTTGGC---TTGTTTCTGGTTAATCCGGGTAACTT
23904781 CATTTTCTGTTTGGCT
1 CATTTTCTGTTTGGCT
23904797 GTATTTTGCT
Statistics
Matches: 53, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
40 11 0.21
41 3 0.06
44 39 0.74
ACGTcount: A:0.11, C:0.16, G:0.21, T:0.52
Consensus pattern (41 bp):
CATTTTCTGTTTGGCTTGTTTCTGGTTAATCCGGGTAACTT
Found at i:23904770 original size:44 final size:44
Alignment explanation
Indices: 23904711--23904798 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 44
23904701 TTCTGTCTGC
23904711 TTGTTTCTGGTTAATCCGGGTAACTTCATTTTCTGTTTGGCTGT
1 TTGTTTCTGGTTAATCCGGGTAACTTCATTTTCTGTTTGGCTGT
* *
23904755 TTGTTTTTGGTTAATCTGGGTAACTTCATTTTCTGTTTGGCTGT
1 TTGTTTCTGGTTAATCCGGGTAACTTCATTTTCTGTTTGGCTGT
23904799 ATTTTGCTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.11, C:0.14, G:0.23, T:0.52
Consensus pattern (44 bp):
TTGTTTCTGGTTAATCCGGGTAACTTCATTTTCTGTTTGGCTGT
Found at i:23904945 original size:24 final size:24
Alignment explanation
Indices: 23904918--23904964 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
23904908 TCTGTCTGTA
23904918 TTAATGCGAGTACCATATTTCTGG
1 TTAATGCGAGTACCATATTTCTGG
*
23904942 TTAATGTGAGTACCATATTTCTG
1 TTAATGCGAGTACCATATTTCTG
23904965 CCTAATGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.40
Consensus pattern (24 bp):
TTAATGCGAGTACCATATTTCTGG
Found at i:23904970 original size:24 final size:24
Alignment explanation
Indices: 23904919--23904972 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
23904909 CTGTCTGTAT
* **
23904919 TAATGCGAGTACCATATTTCTGGT
1 TAATGTGAGTACCATATTTCTGCC
23904943 TAATGTGAGTACCATATTTCTGCC
1 TAATGTGAGTACCATATTTCTGCC
23904967 TAATGT
1 TAATGT
23904973 TTGTTTCTGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.39
Consensus pattern (24 bp):
TAATGTGAGTACCATATTTCTGCC
Found at i:23909701 original size:44 final size:44
Alignment explanation
Indices: 23909629--23909717 Score: 133
Period size: 44 Copynumber: 2.0 Consensus size: 44
23909619 AATTTATAGC
* * *
23909629 TTCAGTTATGCTTCTCTTAACTCCTTGTAAAACCAGTTCGATGT
1 TTCAATTATGCTTCTCTCAACTCATTGTAAAACCAGTTCGATGT
* *
23909673 TTCAATTATGCTTCTCTCAACTCATTGTAAAACTAGTTCGGTGT
1 TTCAATTATGCTTCTCTCAACTCATTGTAAAACCAGTTCGATGT
23909717 T
1 T
23909718 GCTTATACCT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.24, C:0.21, G:0.13, T:0.42
Consensus pattern (44 bp):
TTCAATTATGCTTCTCTCAACTCATTGTAAAACCAGTTCGATGT
Found at i:23913231 original size:10 final size:10
Alignment explanation
Indices: 23913216--23913245 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
23913206 GCGCTCTTTC
23913216 TGTTGTTCTT
1 TGTTGTTCTT
23913226 TGTTGTTCTT
1 TGTTGTTCTT
23913236 TGTTGTTCTT
1 TGTTGTTCTT
23913246 CTTTTGGCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.00, C:0.10, G:0.20, T:0.70
Consensus pattern (10 bp):
TGTTGTTCTT
Found at i:23913547 original size:25 final size:24
Alignment explanation
Indices: 23913514--23913561 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
23913504 CAATTATCTA
23913514 AAAATGTTAAAATTTTAAA-GATATT
1 AAAATGTT--AATTTTAAATGATATT
23913539 AAAATGTTAATTTTAAATGATAT
1 AAAATGTTAATTTTAAATGATAT
23913562 ATTTAAAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 9 0.41
24 5 0.23
25 8 0.36
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (24 bp):
AAAATGTTAATTTTAAATGATATT
Found at i:23921429 original size:20 final size:21
Alignment explanation
Indices: 23921404--23921442 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
23921394 TATAAAATTA
*
23921404 ATTTTTCTAAA-AATATTTTT
1 ATTTTTCAAAATAATATTTTT
23921424 ATTTTTCAAAATAATATTT
1 ATTTTTCAAAATAATATTT
23921443 CCCAATTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.56
Consensus pattern (21 bp):
ATTTTTCAAAATAATATTTTT
Found at i:23926540 original size:21 final size:21
Alignment explanation
Indices: 23926506--23926560 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
23926496 TATTAAACAG
* *
23926506 CTAA-GGTTCGCATATAATTT
1 CTAAGGGTTCACATATAACTT
*
23926526 CTATGGGTTCACATATAACTT
1 CTAAGGGTTCACATATAACTT
*
23926547 CTAAGTGTTCACAT
1 CTAAGGGTTCACAT
23926561 TACAATTCCT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 3 0.10
21 26 0.90
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (21 bp):
CTAAGGGTTCACATATAACTT
Found at i:23926592 original size:23 final size:22
Alignment explanation
Indices: 23926566--23926610 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
23926556 CACATTACAA
* *
23926566 TTCCTATAGTGTTCGCATGTTAT
1 TTCCTATAG-GTTCACATATTAT
*
23926589 TTCCTCTAGGTTCACATATTAT
1 TTCCTATAGGTTCACATATTAT
23926611 ACTGTTCACA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.47
Consensus pattern (22 bp):
TTCCTATAGGTTCACATATTAT
Found at i:23926610 original size:22 final size:23
Alignment explanation
Indices: 23926511--23926610 Score: 59
Period size: 21 Copynumber: 4.6 Consensus size: 23
23926501 AACAGCTAAG
* * *
23926511 GTTCGCATATAATTT-CTAT-GG
1 GTTCACATATTATTTCCTATAGT
* *
23926532 GTTCACATATAACTT-CTA-AGT
1 GTTCACATATTATTTCCTATAGT
* *
23926553 GTTCACAT-TACAATTCCTATAGT
1 GTTCACATAT-TATTTCCTATAGT
* * *
23926576 GTTCGCATGTTATTTCCTCTAG-
1 GTTCACATATTATTTCCTATAGT
23926598 GTTCACATATTAT
1 GTTCACATATTAT
23926611 ACTGTTCACA
Statistics
Matches: 63, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
20 1 0.02
21 28 0.44
22 14 0.22
23 19 0.30
24 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.13, T:0.42
Consensus pattern (23 bp):
GTTCACATATTATTTCCTATAGT
Found at i:23926896 original size:19 final size:20
Alignment explanation
Indices: 23926858--23926896 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
23926848 TGGGTTTTGA
23926858 AGAAAAAATAGAGAATAAAT
1 AGAAAAAATAGAGAATAAAT
* *
23926878 AGAAAGAAT-GAGGATAAAT
1 AGAAAAAATAGAGAATAAAT
23926897 TCTATTAAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.64, C:0.00, G:0.21, T:0.15
Consensus pattern (20 bp):
AGAAAAAATAGAGAATAAAT
Found at i:23926975 original size:6 final size:6
Alignment explanation
Indices: 23926967--23927000 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
23926957 ATAGATTTCT
*
23926967 ATTTGT ATTTGA ATTTGA ATTTGA ATTTGA ATTT
1 ATTTGA ATTTGA ATTTGA ATTTGA ATTTGA ATTT
23927001 ATTTAAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.29, C:0.00, G:0.15, T:0.56
Consensus pattern (6 bp):
ATTTGA
Found at i:23928326 original size:13 final size:14
Alignment explanation
Indices: 23928308--23928342 Score: 54
Period size: 13 Copynumber: 2.5 Consensus size: 14
23928298 GATATATGAA
23928308 TGATTGAATT-TAT
1 TGATTGAATTATAT
23928321 TGATTGAATTACTAT
1 TGATTGAATTA-TAT
23928336 TGATTGA
1 TGATTGA
23928343 TTGCTTGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 10 0.50
15 10 0.50
ACGTcount: A:0.31, C:0.03, G:0.17, T:0.49
Consensus pattern (14 bp):
TGATTGAATTATAT
Found at i:23928536 original size:5 final size:5
Alignment explanation
Indices: 23928526--23928551 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
23928516 TGCATTTGTA
23928526 TGGGT TGGGT TGGGT TGGGT TGGGT T
1 TGGGT TGGGT TGGGT TGGGT TGGGT T
23928552 AGGTAGATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.00, G:0.58, T:0.42
Consensus pattern (5 bp):
TGGGT
Found at i:23935592 original size:25 final size:25
Alignment explanation
Indices: 23935564--23935626 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 25
23935554 AACCAAATAG
*
23935564 AGCCTTTGTGGCGAGTTATCTGTAA
1 AGCCTTTGTGGCGAGTTATCTGAAA
* * * *
23935589 AGCCCTTATGGCGATTTATTTGAAA
1 AGCCTTTGTGGCGAGTTATCTGAAA
* *
23935614 AGTCTATGTGGCG
1 AGCCTTTGTGGCG
23935627 TATTATTTAG
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.22, C:0.16, G:0.27, T:0.35
Consensus pattern (25 bp):
AGCCTTTGTGGCGAGTTATCTGAAA
Found at i:23942803 original size:26 final size:27
Alignment explanation
Indices: 23942774--23942825 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
23942764 TCCACATTAG
* *
23942774 TTGGGCTAGGTTAATTGGGT-TTTGGT
1 TTGGACTAGGTTAAGTGGGTATTTGGT
23942800 TTGGACTAGGTTAAGTGGGTATTTGG
1 TTGGACTAGGTTAAGTGGGTATTTGG
23942826 GATCTGTTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.15, C:0.04, G:0.38, T:0.42
Consensus pattern (27 bp):
TTGGACTAGGTTAAGTGGGTATTTGGT
Found at i:23950610 original size:25 final size:26
Alignment explanation
Indices: 23950581--23950637 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
23950571 TGATATATGC
*
23950581 ATATACGTAC-ATGGATTTTT-TATAT
1 ATATACATACTATGGATTTTTATAT-T
*
23950606 ATATACATACTTATGTATTTTTATATT
1 ATATACATAC-TATGGATTTTTATATT
23950633 ATATA
1 ATATA
23950638 ATTTACATAC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 9 0.33
27 15 0.56
28 3 0.11
ACGTcount: A:0.35, C:0.07, G:0.07, T:0.51
Consensus pattern (26 bp):
ATATACATACTATGGATTTTTATATT
Found at i:23950830 original size:49 final size:49
Alignment explanation
Indices: 23950761--23950855 Score: 163
Period size: 49 Copynumber: 1.9 Consensus size: 49
23950751 TTCTTTGCTT
23950761 AAAAACGCCTAAGCCAGCCTAACTCGCAATGATAAAGGATTCAACAAAA
1 AAAAACGCCTAAGCCAGCCTAACTCGCAATGATAAAGGATTCAACAAAA
* * *
23950810 AAAAACGCCTAAGTCGGCCTAACTTGCAATGATAAAGGATTCAACA
1 AAAAACGCCTAAGCCAGCCTAACTCGCAATGATAAAGGATTCAACA
23950856 GAATTCCCTT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.44, C:0.23, G:0.16, T:0.17
Consensus pattern (49 bp):
AAAAACGCCTAAGCCAGCCTAACTCGCAATGATAAAGGATTCAACAAAA
Found at i:23951082 original size:17 final size:17
Alignment explanation
Indices: 23951060--23951123 Score: 67
Period size: 17 Copynumber: 3.6 Consensus size: 17
23951050 CATCAAAGGC
*
23951060 TACAATTAAAAGCTGTA
1 TACAATTAGAAGCTGTA
*
23951077 TACAATTAGAA-CTCTAAGA
1 TACAATTAGAAGCTGT---A
*
23951096 CACAATTAGAAGCTGTA
1 TACAATTAGAAGCTGTA
23951113 TACAATTAGAA
1 TACAATTAGAA
23951124 CTCTAAGATT
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
16 3 0.08
17 21 0.55
19 11 0.29
20 3 0.08
ACGTcount: A:0.47, C:0.14, G:0.12, T:0.27
Consensus pattern (17 bp):
TACAATTAGAAGCTGTA
Found at i:23951102 original size:19 final size:19
Alignment explanation
Indices: 23951078--23951131 Score: 60
Period size: 17 Copynumber: 2.9 Consensus size: 19
23951068 AAAGCTGTAT
23951078 ACAATTAGAACTCTAAGAC
1 ACAATTAGAACTCTAAGAC
* *
23951097 ACAATTAGAA-GCT--GTAT
1 ACAATTAGAACTCTAAG-AC
23951114 ACAATTAGAACTCTAAGA
1 ACAATTAGAACTCTAAGA
23951132 TTACATAATC
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
16 1 0.04
17 11 0.39
18 4 0.14
19 11 0.39
20 1 0.04
ACGTcount: A:0.46, C:0.17, G:0.13, T:0.24
Consensus pattern (19 bp):
ACAATTAGAACTCTAAGAC
Found at i:23951109 original size:36 final size:36
Alignment explanation
Indices: 23951061--23951131 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
23951051 ATCAAAGGCT
23951061 ACAATTAAAAGCTGTATACAATTAGAACTCTAAGAC
1 ACAATTAAAAGCTGTATACAATTAGAACTCTAAGAC
*
23951097 ACAATTAGAAGCTGTATACAATTAGAACTCTAAGA
1 ACAATTAAAAGCTGTATACAATTAGAACTCTAAGA
23951132 TTACATAATC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.46, C:0.15, G:0.13, T:0.25
Consensus pattern (36 bp):
ACAATTAAAAGCTGTATACAATTAGAACTCTAAGAC
Found at i:23955968 original size:48 final size:48
Alignment explanation
Indices: 23955898--23955994 Score: 131
Period size: 48 Copynumber: 2.0 Consensus size: 48
23955888 TTCTTTGCTT
*
23955898 AAAAACGCCTGAGTCAGCCTAACTCGCAAGGATAAAAGATTCAACAGA
1 AAAAACGCCTAAGTCAGCCTAACTCGCAAGGATAAAAGATTCAACAGA
* * * * * *
23955946 AAAAATGCCTAAGTCGGCCTAACTTGCAATGATAAAGGATTCAATAGA
1 AAAAACGCCTAAGTCAGCCTAACTCGCAAGGATAAAAGATTCAACAGA
23955994 A
1 A
23955995 TTCCCTCAAG
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.43, C:0.20, G:0.19, T:0.19
Consensus pattern (48 bp):
AAAAACGCCTAAGTCAGCCTAACTCGCAAGGATAAAAGATTCAACAGA
Found at i:23956218 original size:17 final size:17
Alignment explanation
Indices: 23956196--23956259 Score: 67
Period size: 17 Copynumber: 3.6 Consensus size: 17
23956186 CATCAAAGGC
*
23956196 TACAATTAAAAGTTGTA
1 TACAATTAGAAGTTGTA
*
23956213 TACAATTAGAACTCTAAG-A
1 TACAATTAGAAGT-T--GTA
*
23956232 CACAATTAGAAGTTGTA
1 TACAATTAGAAGTTGTA
23956249 TACAATTAGAA
1 TACAATTAGAA
23956260 CTCTAAGATT
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
16 1 0.03
17 22 0.58
18 2 0.05
19 12 0.32
20 1 0.03
ACGTcount: A:0.47, C:0.11, G:0.12, T:0.30
Consensus pattern (17 bp):
TACAATTAGAAGTTGTA
Found at i:23956237 original size:36 final size:36
Alignment explanation
Indices: 23956197--23956267 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
23956187 ATCAAAGGCT
23956197 ACAATTAAAAGTTGTATACAATTAGAACTCTAAGAC
1 ACAATTAAAAGTTGTATACAATTAGAACTCTAAGAC
*
23956233 ACAATTAGAAGTTGTATACAATTAGAACTCTAAGA
1 ACAATTAAAAGTTGTATACAATTAGAACTCTAAGA
23956268 TTACATAATC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.46, C:0.13, G:0.13, T:0.28
Consensus pattern (36 bp):
ACAATTAAAAGTTGTATACAATTAGAACTCTAAGAC
Found at i:23956238 original size:19 final size:19
Alignment explanation
Indices: 23956214--23956267 Score: 60
Period size: 17 Copynumber: 2.9 Consensus size: 19
23956204 AAAGTTGTAT
23956214 ACAATTAGAACTCTAAGAC
1 ACAATTAGAACTCTAAGAC
* *
23956233 ACAATTAGAAGT-T--GTAT
1 ACAATTAGAACTCTAAG-AC
23956250 ACAATTAGAACTCTAAGA
1 ACAATTAGAACTCTAAGA
23956268 TTACATAATC
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
16 1 0.04
17 12 0.43
18 2 0.07
19 12 0.43
20 1 0.04
ACGTcount: A:0.46, C:0.15, G:0.13, T:0.26
Consensus pattern (19 bp):
ACAATTAGAACTCTAAGAC
Found at i:23957654 original size:23 final size:23
Alignment explanation
Indices: 23957627--23957686 Score: 70
Period size: 23 Copynumber: 2.6 Consensus size: 23
23957617 TACTTAAATT
*
23957627 TATTTCAAATATATAA-AATTATA
1 TATTT-AAATATATAATAACTATA
*
23957650 TATTTAAATTTATAATAACTATA
1 TATTTAAATATATAATAACTATA
23957673 T-TTTAAATTATATA
1 TATTTAAA-TATATA
23957687 TTCAAATAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
22 15 0.47
23 17 0.53
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (23 bp):
TATTTAAATATATAATAACTATA
Found at i:23957663 original size:22 final size:23
Alignment explanation
Indices: 23957627--23957686 Score: 70
Period size: 22 Copynumber: 2.6 Consensus size: 23
23957617 TACTTAAATT
* *
23957627 TATTTCAAATATATAA-AATTATA
1 TATTT-AAATTTATAATAACTATA
23957650 TATTTAAATTTATAATAACTATA
1 TATTTAAATTTATAATAACTATA
23957673 T-TTTAAATTATATA
1 TATTTAAATT-TATA
23957687 TTCAAATAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
22 17 0.52
23 16 0.48
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (23 bp):
TATTTAAATTTATAATAACTATA
Found at i:23965667 original size:63 final size:63
Alignment explanation
Indices: 23965597--23965725 Score: 231
Period size: 63 Copynumber: 2.0 Consensus size: 63
23965587 AGAGAAAAGT
23965597 AAAAAAAAGAAGTCATTCTCTATTAAGCTTTTATCCTGTTTATATAGGAATTAGCCTGTAATTCC
1 AAAAAAAA-AA-TCATTCTCTATTAAGCTTTTATCCTGTTTATATAGGAATTAGCCTGTAATTCC
*
23965662 AAAAAAAAAATCCTTCTCTATTAAGCTTTTATCCTGTTTATATAGGAATTAGCCTGTAATTCC
1 AAAAAAAAAATCATTCTCTATTAAGCTTTTATCCTGTTTATATAGGAATTAGCCTGTAATTCC
23965725 A
1 A
23965726 CTATAACTTG
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
63 53 0.84
64 2 0.03
65 8 0.13
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.37
Consensus pattern (63 bp):
AAAAAAAAAATCATTCTCTATTAAGCTTTTATCCTGTTTATATAGGAATTAGCCTGTAATTCC
Found at i:23967020 original size:24 final size:24
Alignment explanation
Indices: 23966988--23967033 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
23966978 AACAAAAATT
* * *
23966988 TAAATATTCCTAACAATTTAAACA
1 TAAAAATTCCAAACAAATTAAACA
23967012 TAAAAATTCCAAACAAATTAAA
1 TAAAAATTCCAAACAAATTAAA
23967034 ACTTCAATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.57, C:0.15, G:0.00, T:0.28
Consensus pattern (24 bp):
TAAAAATTCCAAACAAATTAAACA
Found at i:23967822 original size:30 final size:30
Alignment explanation
Indices: 23967788--23967848 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
23967778 ATAATTGCAA
23967788 ACAAAAAAACATACAGCAATCTCAAATAAT
1 ACAAAAAAACATACAGCAATCTCAAATAAT
23967818 ACAAAAAAACATACAGCAATCTCAAATAAT
1 ACAAAAAAACATACAGCAATCTCAAATAAT
23967848 A
1 A
23967849 GTTTCAACCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.61, C:0.20, G:0.03, T:0.16
Consensus pattern (30 bp):
ACAAAAAAACATACAGCAATCTCAAATAAT
Found at i:23969406 original size:41 final size:42
Alignment explanation
Indices: 23969331--23969609 Score: 320
Period size: 41 Copynumber: 6.8 Consensus size: 42
23969321 CTGACCTTTC
* *
23969331 GGGGCTTTAGCGACGTTTTTTGAAAAAGCACCGCTAATGCT-T
1 GGGGCTTTAGCGGCG-TTTTTGAAAAAGCGCCGCTAATGCTCT
*
23969373 GGGGCTATAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCT
1 GGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCT
* *
23969415 -GGTCTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGCTC-
1 GGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCT
*
23969455 GGGACTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCT
1 GGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCT
* * ** *
23969497 -GGTCTTTAGCAGCAATTTT-AGAAAAGCGCCGTTAATGCTCT
1 GGGGCTTTAGCGGCGTTTTTGA-AAAAGCGCCGCTAATGCTCT
* ** * * *
23969538 -GGTCTTTAATGGCATTTTCGAAAAAGCGCCGCTAATTCTC-
1 GGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCT
* *
23969578 GGTGCTTTAGCAGCGTTTTTGAAAAAGCGCCG
1 GGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCG
23969610 AAAAAATATT
Statistics
Matches: 204, Mismatches: 27, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
40 1 0.00
41 188 0.92
42 15 0.07
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (42 bp):
GGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCT
Found at i:23969473 original size:82 final size:82
Alignment explanation
Indices: 23969347--23969609 Score: 359
Period size: 82 Copynumber: 3.2 Consensus size: 82
23969337 TTAGCGACGT
* * * *
23969347 TTTTTGAAAAAGCACCGCTAATGCTTGGGGCTATAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
1 TTTTTGAAAAAGCGCCGCTAATGCTCGGGACTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
*
23969412 TCTGGTCTTTAGCGGCA
66 TCTGGTCTTTAGCAGCA
23969429 TTTTTGAAAAAGCGCCGCTAATGCTCGGGACTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
1 TTTTTGAAAAAGCGCCGCTAATGCTCGGGACTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
23969494 TCTGGTCTTTAGCAGCA
66 TCTGGTCTTTAGCAGCA
* * * * ** * * *
23969511 ATTTT-AGAAAAGCGCCGTTAATGCTCTGGTCTTTAATGGCATTTTCGAAAAAGCGCCGCTAATT
1 TTTTTGA-AAAAGCGCCGCTAATGCTCGGGACTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATG
*
23969575 CTC-GGTGCTTTAGCAGCG
65 CTCTGGT-CTTTAGCAGCA
23969593 TTTTTGAAAAAGCGCCG
1 TTTTTGAAAAAGCGCCG
23969610 AAAAAATATT
Statistics
Matches: 162, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
81 4 0.02
82 157 0.97
83 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (82 bp):
TTTTTGAAAAAGCGCCGCTAATGCTCGGGACTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
TCTGGTCTTTAGCAGCA
Found at i:23969552 original size:123 final size:122
Alignment explanation
Indices: 23969332--23969609 Score: 380
Period size: 123 Copynumber: 2.3 Consensus size: 122
23969322 TGACCTTTCG
* * * * *
23969332 GGGCTTTAGCGACGTTTTTTGAAAAAGCACCGCTAATGCTTGGGGCTATAGCGGCGTTTTTGAAA
1 GGGCTTTAGCGGCG-TTTTTGAAAAAGCGCCGCTAATGCTTGGGGCTATAGCAGCATTTTAGAAA
* *
23969397 AAGCGCCGCTAATGCTCTGGTCTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGCTC
65 AAGCGCCGCTAATGCTCTGGTCTTTAACGGCATTTTCGAAAAAGCGCCGCTAATGCTC
* *
23969455 GGGACTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCT-GGTCTTTAGCAGCAATTTTAG-
1 GGG-CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCT-TGGGGCTATAGCAGC-ATTTTAGA
* * *
23969518 AAAAGCGCCGTTAATGCTCTGGTCTTTAATGGCATTTTCGAAAAAGCGCCGCTAATTCTC
63 AAAAGCGCCGCTAATGCTCTGGTCTTTAACGGCATTTTCGAAAAAGCGCCGCTAATGCTC
*
23969578 GGTGCTTTAGCAGCGTTTTTGAAAAAGCGCCG
1 GG-GCTTTAGCGGCGTTTTTGAAAAAGCGCCG
23969610 AAAAAATATT
Statistics
Matches: 138, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
123 121 0.88
124 17 0.12
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (122 bp):
GGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTTGGGGCTATAGCAGCATTTTAGAAAA
AGCGCCGCTAATGCTCTGGTCTTTAACGGCATTTTCGAAAAAGCGCCGCTAATGCTC
Found at i:23969970 original size:23 final size:23
Alignment explanation
Indices: 23969940--23970022 Score: 112
Period size: 23 Copynumber: 3.4 Consensus size: 23
23969930 AAAAAATATT
23969940 AGTTTAAATAGAATTAATAAATA
1 AGTTTAAATAGAATTAATAAATA
* *
23969963 AGTTTAAATAAAATATATTTAAATA
1 AGTTTAAATAGAAT-TA-ATAAATA
23969988 TTAGTTTAAATAGAATTAATAAATA
1 --AGTTTAAATAGAATTAATAAATA
23970013 AGTTTAAATA
1 AGTTTAAATA
23970023 AAATATATTT
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
23 23 0.44
24 2 0.04
25 12 0.23
26 2 0.04
27 13 0.25
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (23 bp):
AGTTTAAATAGAATTAATAAATA
Found at i:23969992 original size:50 final size:50
Alignment explanation
Indices: 23969933--23970097 Score: 258
Period size: 50 Copynumber: 3.1 Consensus size: 50
23969923 AAAATTTAAA
23969933 AAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAAATATATTT
1 AAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAAATATATTT
23969983 AAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAAATATATTTAAATATTT
1 AAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAAT--AA-A-A--T--ATATTT
23970041 AAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAAATATATTT
1 AAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAAATATATTT
23970091 AAATATT
1 AAATATT
23970098 TAAATATTAG
Statistics
Matches: 107, Mismatches: 0, Indels: 16
0.87 0.00 0.13
Matches are distributed among these distances:
50 52 0.49
52 3 0.03
53 1 0.01
54 2 0.02
55 1 0.01
56 3 0.03
58 45 0.42
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (50 bp):
AAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAAATATATTT
Found at i:23970041 original size:23 final size:24
Alignment explanation
Indices: 23969939--23970045 Score: 98
Period size: 23 Copynumber: 4.5 Consensus size: 24
23969929 TAAAAAATAT
* *
23969939 TAGTTTAAATAGAAT-TA-ATAAA
1 TAGTTTAAATAAAATATATTTAAA
23969961 TAAGTTTAAATAAAATATATTTAAATA
1 T-AGTTTAAATAAAATATATTT-AA-A
* *
23969988 TTAGTTTAAATAGAAT-TA-ATAAA
1 -TAGTTTAAATAAAATATATTTAAA
23970011 TAAGTTTAAATAAAATATATTTAAA
1 T-AGTTTAAATAAAATATATTTAAA
23970036 TA-TTTAAATA
1 TAGTTTAAATA
23970046 TTAGTTTAAA
Statistics
Matches: 70, Mismatches: 6, Indels: 17
0.75 0.06 0.18
Matches are distributed among these distances:
22 2 0.03
23 35 0.50
24 7 0.10
25 7 0.10
26 4 0.06
27 14 0.20
28 1 0.01
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (24 bp):
TAGTTTAAATAAAATATATTTAAA
Found at i:23970048 original size:58 final size:58
Alignment explanation
Indices: 23969977--23970138 Score: 290
Period size: 58 Copynumber: 2.8 Consensus size: 58
23969967 TAAATAAAAT
23969977 ATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAAATATATTTAA
1 ATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAAATATATTTAA
23970035 ATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAAATATATTTAA
1 ATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAAATATATTTAA
* *
23970093 ATATTTAAATATTAGTTGAAATAGAATTAATAATTATA-TTTAAATA
1 ATATTTAAATATTAGTTTAAATAGAATTAATAAATA-AGTTTAAATA
23970139 TTTTTAAATA
Statistics
Matches: 101, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
58 100 0.99
59 1 0.01
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (58 bp):
ATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAAATATATTTAA
Found at i:23973740 original size:41 final size:42
Alignment explanation
Indices: 23973680--23973850 Score: 199
Period size: 43 Copynumber: 4.1 Consensus size: 42
23973670 TTAATTTTTT
* *
23973680 TAAAAGTCATG-TTTTTAGCGGCATTTGTGAAAAAGTGCCGC
1 TAAAAGTTATGATTTTTAGCGGCGTTTGTGAAAAAGTGCCGC
23973721 TAAAAGTT-T-ATTTTATAGCGGCGTTTGT-AATAGAAGTGCCGC
1 TAAAAGTTATGATTTT-TAGCGGCGTTTGTGAA-A-AAGTGCCGC
* * *
23973763 TAAAAGTTATGATTTTTAGTGACGTTTGTGGTAAAAGTGCCGC
1 TAAAAGTTATGATTTTTAGCGGCGTTTGT-GAAAAAGTGCCGC
* * *
23973806 TAAAGGTTATGATTTTTAGCGGCGTGTGTG-AAAAGCGCCGC
1 TAAAAGTTATGATTTTTAGCGGCGTTTGTGAAAAAGTGCCGC
23973847 TAAA
1 TAAA
23973851 GACCATGATC
Statistics
Matches: 112, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
40 7 0.06
41 34 0.30
42 18 0.16
43 46 0.41
44 6 0.05
45 1 0.01
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (42 bp):
TAAAAGTTATGATTTTTAGCGGCGTTTGTGAAAAAGTGCCGC
Found at i:23973779 original size:84 final size:84
Alignment explanation
Indices: 23973680--23973873 Score: 218
Period size: 84 Copynumber: 2.3 Consensus size: 84
23973670 TTAATTTTTT
23973680 TAAAAGTCATG-TTTTTAGCGGCATTTGT-GAAAAAGTGCCGCTAAAAGTT-T-ATTTTATAGCG
1 TAAAAGTCATGATTTTTAGCGGCATTTGTGGAAAAAGTGCCGCTAAAAGTTATGATTTT-TAGCG
* *
23973741 GCGTTTGTAATAGAAGTGCCGC
65 GCGTGTGTAA-A-AAGCGCCGC
* * * * * *
23973763 TAAAAGTTATGATTTTTAGTGACGTTTGTGGTAAAAGTGCCGCTAAAGGTTATGATTTTTAGCGG
1 TAAAAGTCATGATTTTTAGCGGCATTTGTGGAAAAAGTGCCGCTAAAAGTTATGATTTTTAGCGG
*
23973828 CGTGTGTGAAAAGCGCCGC
66 CGTGTGTAAAAAGCGCCGC
* *
23973847 T-AAAGACCATGATCTTTAGCGGCATTT
1 TAAAAG-TCATGATTTTTAGCGGCATTT
23973874 TTTCACGTAA
Statistics
Matches: 91, Mismatches: 15, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
83 14 0.15
84 38 0.42
85 20 0.22
86 14 0.15
87 5 0.05
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (84 bp):
TAAAAGTCATGATTTTTAGCGGCATTTGTGGAAAAAGTGCCGCTAAAAGTTATGATTTTTAGCGG
CGTGTGTAAAAAGCGCCGC
Found at i:23973859 original size:41 final size:43
Alignment explanation
Indices: 23973771--23973869 Score: 112
Period size: 41 Copynumber: 2.3 Consensus size: 43
23973761 GCTAAAAGTT
* * * * ***
23973771 ATGATTTTTAGTGACGTTTGTGGTAAAAGTGCCGCTAAAGGTT
1 ATGATTTTTAGCGGCGTGTGTGGTAAAAGCGCCGCTAAAGACC
23973814 ATGATTTTTAGCGGCGTGTGT-G-AAAAGCGCCGCTAAAGACC
1 ATGATTTTTAGCGGCGTGTGTGGTAAAAGCGCCGCTAAAGACC
*
23973855 ATGATCTTTAGCGGC
1 ATGATTTTTAGCGGC
23973870 ATTTTTTCAC
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
41 29 0.60
42 1 0.02
43 18 0.38
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.31
Consensus pattern (43 bp):
ATGATTTTTAGCGGCGTGTGTGGTAAAAGCGCCGCTAAAGACC
Found at i:23976838 original size:139 final size:139
Alignment explanation
Indices: 23976498--23976840 Score: 349
Period size: 140 Copynumber: 2.4 Consensus size: 139
23976488 CATTTGCAAT
* * *
23976498 TATCTAATC-ATCTAACGAAATGAGTTAATATGTTAAAAATATTAATTAAAAATAAAAATAAAAA
1 TATCTAA-CAATCTAACGAAAAGAGTTAATATGTTAAAAACATTAATTAAAAAT----TTAAAAA
* * * *
23976562 ACTTGAAGCAACATTAAATAAAAATACAAATGTGAGTAGTAAAAGAATAAAACTCGAGACTCAAT
61 ACTTGAAGCAACATGAAATAAAAATAAAAATATGAGTAGTAAAAGAATAAAACTCGAGACTCAAG
* *
23976627 GTTGTAATTATAAC
126 GATGTAATTACAAC
* * * * * * *
23976641 TATCTTACCATCTAACGAAAA-AATTAACATCTTAAAAAACATTAATTAAAAAATTAAAAAGCTT
1 TATCTAACAATCTAACGAAAAGAGTTAATATGTT-AAAAACATTAATTAAAAATTTAAAAAACTT
* * *
23976705 GAAGTAACATGAAATAAAAAATAAAAATATGAGTA--AGAGAGAAATTAAACTCGAGACTCAAGG
65 GAAGCAACATGAAAT-AAAAATAAAAATATGAGTAGTA-AAAG-AATAAAACTCGAGACTCAAGG
*
23976768 ATGTAATTGCAAC
127 ATGTAATTACAAC
*
23976781 TAAT-TAAACAATCTAAC-AAAAGAGCTAATATGTTAAAAA-ATTAATTAAAAATTTAAAAAA
1 T-ATCT-AACAATCTAACGAAAAGAGTTAATATGTTAAAAACATTAATTAAAAATTTAAAAAA
23976841 TACAAATGTG
Statistics
Matches: 165, Mismatches: 27, Indels: 20
0.78 0.13 0.09
Matches are distributed among these distances:
138 1 0.01
139 44 0.27
140 57 0.35
141 19 0.12
142 10 0.06
143 34 0.21
ACGTcount: A:0.54, C:0.10, G:0.10, T:0.27
Consensus pattern (139 bp):
TATCTAACAATCTAACGAAAAGAGTTAATATGTTAAAAACATTAATTAAAAATTTAAAAAACTTG
AAGCAACATGAAATAAAAATAAAAATATGAGTAGTAAAAGAATAAAACTCGAGACTCAAGGATGT
AATTACAAC
Found at i:23977889 original size:23 final size:23
Alignment explanation
Indices: 23977863--23977909 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
23977853 TAAATTTTGA
*
23977863 ATTATTTAGTGATAATCTTTAGG
1 ATTATTTAGTGATAATATTTAGG
23977886 ATTATTTAGTGATAATATTTAGG
1 ATTATTTAGTGATAATATTTAGG
23977909 A
1 A
23977910 AAAATCTAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.34, C:0.02, G:0.17, T:0.47
Consensus pattern (23 bp):
ATTATTTAGTGATAATATTTAGG
Found at i:23977906 original size:13 final size:13
Alignment explanation
Indices: 23977865--23977907 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
23977855 AATTTTGAAT
23977865 TATTTAGTGATAA
1 TATTTAGTGATAA
*
23977878 TCTTTAG-GAT--
1 TATTTAGTGATAA
23977888 TATTTAGTGATAA
1 TATTTAGTGATAA
23977901 TATTTAG
1 TATTTAG
23977908 GAAAAATCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
10 6 0.24
11 3 0.12
12 3 0.12
13 13 0.52
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:23980762 original size:16 final size:16
Alignment explanation
Indices: 23980741--23980772 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
23980731 ATTTTGTTGC
*
23980741 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
23980757 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
23980773 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:23985965 original size:9 final size:10
Alignment explanation
Indices: 23985942--23985973 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
23985932 CTACATTCGA
23985942 AAAAAATAAT
1 AAAAAATAAT
23985952 AAAAAATAAT
1 AAAAAATAAT
23985962 AAAAAAT-AT
1 AAAAAATAAT
23985971 AAA
1 AAA
23985974 TAAAAGTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 5 0.23
10 17 0.77
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (10 bp):
AAAAAATAAT
Found at i:23986532 original size:13 final size:13
Alignment explanation
Indices: 23986514--23986569 Score: 82
Period size: 13 Copynumber: 4.5 Consensus size: 13
23986504 AAATTTGAAT
23986514 TATTTAGTGATAA
1 TATTTAGTGATAA
*
23986527 TATTTAGTGATCA
1 TATTTAGTGATAA
23986540 TATTTAG-GAT--
1 TATTTAGTGATAA
23986550 TATTTAGTGATAA
1 TATTTAGTGATAA
23986563 TATTTAG
1 TATTTAG
23986570 AAAAAATCTA
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
10 7 0.18
11 3 0.08
12 3 0.08
13 26 0.67
ACGTcount: A:0.34, C:0.02, G:0.16, T:0.48
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:23987922 original size:29 final size:27
Alignment explanation
Indices: 23987881--23987987 Score: 92
Period size: 29 Copynumber: 3.8 Consensus size: 27
23987871 TTTTATTAAG
*
23987881 TTTATAATATTTATAAATTTTTATGATTCT
1 TTTA-AATTTTTATAAATTTTTA-GATT-T
23987911 TTTAAATTTTTATAAATTTTGTA-A-TT
1 TTTAAATTTTTATAAATTTT-TAGATTT
* * *
23987937 TCTAAGTTTATATAAATTTTTAGTATTT
1 TTTAAATTTTTATAAATTTTTAG-ATTT
* *
23987965 TTATAAATTTTAATAACTTTTTA
1 TT-TAAATTTTTATAAATTTTTA
23987988 TTATAAAAAT
Statistics
Matches: 63, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
25 2 0.03
26 18 0.29
27 2 0.03
28 4 0.06
29 31 0.49
30 6 0.10
ACGTcount: A:0.35, C:0.03, G:0.04, T:0.59
Consensus pattern (27 bp):
TTTAAATTTTTATAAATTTTTAGATTT
Found at i:23987928 original size:10 final size:10
Alignment explanation
Indices: 23987851--23987988 Score: 75
Period size: 10 Copynumber: 14.7 Consensus size: 10
23987841 TTTATTGCTT
23987851 TTTTTAT-AA
1 TTTTTATAAA
23987860 TTTATTA-AAA
1 TTT-TTATAAA
*
23987870 TTTTTATTAA
1 TTTTTATAAA
*
23987880 -GTTTAT-AA
1 TTTTTATAAA
*
23987888 TATTTATAAA
1 TTTTTATAAA
*
23987898 TTTTTAT-GA
1 TTTTTATAAA
23987907 TTCTTT-TAAA
1 TT-TTTATAAA
23987917 TTTTTATAAA
1 TTTTTATAAA
*
23987927 -TTTTGT-AA
1 TTTTTATAAA
* *
23987935 --TTTCTAAG
1 TTTTTATAAA
*
23987943 TTTATATAAA
1 TTTTTATAAA
23987953 TTTTTAGT--A
1 TTTTTA-TAAA
23987962 TTTTTATAAA
1 TTTTTATAAA
* *
23987972 TTTTAATAAC
1 TTTTTATAAA
23987982 TTTTTAT
1 TTTTTAT
23987989 TATAAAAATG
Statistics
Matches: 99, Mismatches: 16, Indels: 27
0.70 0.11 0.19
Matches are distributed among these distances:
7 4 0.04
8 6 0.06
9 35 0.35
10 53 0.54
11 1 0.01
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (10 bp):
TTTTTATAAA
Found at i:23988987 original size:18 final size:19
Alignment explanation
Indices: 23988954--23988993 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
23988944 AGTTCTATAT
23988954 AAAAATTATTAAAAAAT-G
1 AAAAATTATTAAAAAATAG
**
23988972 AAAAATTATTTTAAAATAG
1 AAAAATTATTAAAAAATAG
23988991 AAA
1 AAA
23988994 GTTCTATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (19 bp):
AAAAATTATTAAAAAATAG
Found at i:23991681 original size:51 final size:50
Alignment explanation
Indices: 23991612--23991807 Score: 250
Period size: 51 Copynumber: 3.9 Consensus size: 50
23991602 CAATGATGTT
* * *
23991612 CGGTTCACATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA-TACCATC
* * * *
23991663 CGATACACGTAGTAGCCTGCACATAGTACTACACACGTGATCGAAACTATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGA-CCATACCATC
* * * *
23991714 CGGTACACATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATACCA-TC
*
23991764 CGGTACACGTAGTAGCCTGCACATAGTATTACACACGTGACCAT
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAT
23991808 CACTCACTTT
Statistics
Matches: 123, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
49 2 0.02
50 41 0.33
51 78 0.63
52 2 0.02
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (50 bp):
CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATACCATC
Found at i:23991799 original size:101 final size:101
Alignment explanation
Indices: 23991612--23991803 Score: 314
Period size: 101 Copynumber: 1.9 Consensus size: 101
23991602 CAATGATGTT
* *
23991612 CGGTTCACATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCGATACACGTAGTA
1 CGGTACACATAGTAGCCTGCACATAGTACTACACATGCGACCA-TACCATCCGATACACGTAGTA
23991677 GCCTGCACATAGTACTACACACGTGATCGAAACTATC
65 GCCTGCACATAGTACTACACACGTGATCGAAACTATC
* *
23991714 CGGTACACATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCCGGTACACGTAGTA
1 CGGTACACATAGTAGCCTGCACATAGTACTACACATGCGACCATACCA-TCCGATACACGTAGTA
*
23991778 GCCTGCACATAGTATTACACACGTGA
65 GCCTGCACATAGTACTACACACGTGA
23991804 CCATCACTCA
Statistics
Matches: 84, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
100 4 0.05
101 40 0.48
102 40 0.48
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (101 bp):
CGGTACACATAGTAGCCTGCACATAGTACTACACATGCGACCATACCATCCGATACACGTAGTAG
CCTGCACATAGTACTACACACGTGATCGAAACTATC
Found at i:23994304 original size:9 final size:9
Alignment explanation
Indices: 23994287--23994323 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
23994277 TGGGTTTTCG
23994287 AATTCGAAT
1 AATTCGAAT
*
23994296 AACTCGAAT
1 AATTCGAAT
23994305 AATTCGAAT
1 AATTCGAAT
23994314 AATTCGAAT
1 AATTCGAAT
23994323 A
1 A
23994324 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:24002690 original size:15 final size:15
Alignment explanation
Indices: 24002670--24002701 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
24002660 CATTTCACTA
*
24002670 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
24002685 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
24002700 TT
1 TT
24002702 TGCATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:24008201 original size:27 final size:27
Alignment explanation
Indices: 24008171--24008223 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
24008161 CTATCACATT
*
24008171 AGGTCTGGCGAG-TAGGTGTATGCCAGC
1 AGGTCTGGCAAGCT-GGTGTATGCCAGC
*
24008198 AGGTCTGGCAAGCTGGTGTTTGCCAG
1 AGGTCTGGCAAGCTGGTGTATGCCAG
24008224 TGGATTTGGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.17, C:0.19, G:0.40, T:0.25
Consensus pattern (27 bp):
AGGTCTGGCAAGCTGGTGTATGCCAGC
Found at i:24011415 original size:8 final size:8
Alignment explanation
Indices: 24011398--24011559 Score: 64
Period size: 10 Copynumber: 18.4 Consensus size: 8
24011388 TATTTTCTTA
*
24011398 TAAAATAT
1 TAAAAAAT
24011406 TAAAAAAT
1 TAAAAAAT
24011414 T-AAAAA-
1 TAAAAAAT
24011420 TAAAAAAGT
1 TAAAAAA-T
24011429 ATAAAAAGTAT
1 -TAAAAA--AT
*
24011440 T-AAATAT
1 TAAAAAAT
24011447 TAAAAATAT
1 TAAAAA-AT
24011456 T--AAAAT
1 TAAAAAAT
24011462 TGATATAAAAT
1 T-A-A-AAAAT
24011473 TATAAAAAT
1 TA-AAAAAT
24011482 TATTAAAAAT
1 TA--AAAAAT
*
24011492 GATAAAAACT
1 --TAAAAAAT
24011502 TAAAAATAT
1 TAAAAA-AT
24011511 TAGAAAAAAT
1 T--AAAAAAT
24011521 ATATAAAAAT
1 -TA-AAAAAT
*
24011531 CTAATAAAT
1 -TAAAAAAT
24011540 TATAAAAAT
1 TA-AAAAAT
*
24011549 TATAAAAT
1 TAAAAAAT
24011557 TAA
1 TAA
24011560 TAAAGCATAT
Statistics
Matches: 122, Mismatches: 10, Indels: 44
0.69 0.06 0.25
Matches are distributed among these distances:
6 4 0.03
7 16 0.13
8 26 0.21
9 28 0.23
10 32 0.26
11 13 0.11
12 3 0.02
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (8 bp):
TAAAAAAT
Found at i:24011451 original size:26 final size:25
Alignment explanation
Indices: 24011399--24011460 Score: 65
Period size: 26 Copynumber: 2.5 Consensus size: 25
24011389 ATTTTCTTAT
24011399 AAAATATTAAAAA--ATTAAAAATAA
1 AAAATA-TAAAAAGTATTAAAAATAA
* *
24011423 AAAAGTATAAAAAGTATTAAATATTA
1 AAAA-TATAAAAAGTATTAAAAATAA
*
24011449 AAAATATTAAAA
1 AAAATATAAAAA
24011461 TTGATATAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
24 10 0.31
25 9 0.28
26 13 0.41
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.27
Consensus pattern (25 bp):
AAAATATAAAAAGTATTAAAAATAA
Found at i:24011488 original size:29 final size:29
Alignment explanation
Indices: 24011447--24011563 Score: 95
Period size: 29 Copynumber: 4.1 Consensus size: 29
24011437 TATTAAATAT
* *
24011447 TAAAAA-TATTAAAATTGATATAAAATTA
1 TAAAAATTATAAAAAATGATATAAAATTA
*
24011475 TAAAAATTATTAAAAATGATA-AAAACTTA
1 TAAAAATTATAAAAAATGATATAAAA-TTA
* * *
24011504 -AAAATATTAGAAAAAAT-ATATAAAAATC
1 TAAAA-ATTATAAAAAATGATATAAAATTA
24011532 TAATAAATTAT-AAAAAT--TATAAAATTAA
1 TAA-AAATTATAAAAAATGATATAAAATT-A
24011560 TAAA
1 TAAA
24011564 GCATATTTAA
Statistics
Matches: 74, Mismatches: 8, Indels: 15
0.76 0.08 0.15
Matches are distributed among these distances:
27 9 0.12
28 27 0.36
29 36 0.49
30 2 0.03
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.32
Consensus pattern (29 bp):
TAAAAATTATAAAAAATGATATAAAATTA
Found at i:24011490 original size:19 final size:19
Alignment explanation
Indices: 24011395--24011789 Score: 105
Period size: 19 Copynumber: 21.1 Consensus size: 19
24011385 TAATATTTTC
24011395 TTAT-AAAA-TATTAAAAA
1 TTATAAAAATTATTAAAAA
*
24011412 AT-TAAAAA-TA--AAAAA
1 TTATAAAAATTATTAAAAA
* * *
24011427 GTATAAAAAGTATTAAATA
1 TTATAAAAATTATTAAAAA
24011446 -T-TAAAAA-TATT-AAAA
1 TTATAAAAATTATTAAAAA
24011461 TTGATATAAAATTA-TAAAAA
1 TT-ATA-AAAATTATTAAAAA
*
24011481 TTATTAAAAATGA-TAAAAA
1 TTA-TAAAAATTATTAAAAA
**
24011500 CTTA-AAAATATTAGAAAAAA
1 -TTATAAAA-ATTATTAAAAA
*
24011520 TATATAAAAATCTA--ATAAA
1 T-TATAAAAAT-TATTAAAAA
24011539 TTATAAAAATTA-T-AAAA
1 TTATAAAAATTATTAAAAA
*
24011556 TTAATAAAGCA-TATTTAAAATA
1 TT-ATAAA-AATTA-TTAAAA-A
*
24011578 TT-T-AAAATTTTATAAAAA
1 TTATAAAAATTAT-TAAAAA
* * *
24011596 CGTATAAAAATTCTTTAAAAC
1 -TTATAAAAATT-ATTAAAAA
*
24011617 TTATAAAAAATCA-TAAAAA
1 TTAT-AAAAATTATTAAAAA
** *
24011636 -TATAAAAAAAATTAAATA
1 TTATAAAAATTATTAAAAA
**
24011654 TTATAAATGTTATT--AAA
1 TTATAAAAATTATTAAAAA
* * *
24011671 -TATTAAATTTGA-TATAAAC
1 TTATAAAAATT-ATTA-AAAA
*
24011690 TTATAAAAATTATTAACCAGA
1 TTATAAAAATTATTAA--AAA
* *
24011711 TCATAAAAACTTA-TAAATA
1 TTATAAAAA-TTATTAAAAA
*
24011730 TTGTAAAAA-TA-TAAAAA
1 TTATAAAAATTATTAAAAA
*
24011747 TCTA-ATAAATTATTTATAAAA
1 T-TATAAAAATTA-TTA-AAAA
24011768 TT-TATAAAATATATTAAAAA
1 TTATA-AAAAT-TATTAAAAA
24011788 TT
1 TT
24011790 TTATAAAAAC
Statistics
Matches: 285, Mismatches: 42, Indels: 99
0.67 0.10 0.23
Matches are distributed among these distances:
15 9 0.03
16 20 0.07
17 43 0.15
18 37 0.13
19 68 0.24
20 48 0.17
21 50 0.18
22 10 0.04
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.34
Consensus pattern (19 bp):
TTATAAAAATTATTAAAAA
Found at i:24011523 original size:55 final size:53
Alignment explanation
Indices: 24011394--24011555 Score: 145
Period size: 57 Copynumber: 3.0 Consensus size: 53
24011384 TTAATATTTT
* *
24011394 CTTATAAAATATT-AAAAAAT-TAAAAATA-AAAAAGTATAAAAA-GTATTAAATA
1 CTTA-AAAATATTAAAAAAATATAAAAATATAAAAATTATAAAAATG-A-TAAAAA
** *
24011446 -TTAAAAATATTAAAATTGATATAAAATTATAAAAATTATTAAAAATGATAAAAA
1 CTTAAAAATATTAAAA-AAATATAAAAATATAAAAATTA-TAAAAATGATAAAAA
* *
24011500 CTTAAAAATATTAGAAAAAATATATAAAAATCTAATAAATTATAAAAATTATAAAA
1 CTTAAAAATATT--AAAAAA-ATATAAAAATATAA-AAATTATAAAAATGATAAAA
24011556 TTAATAAAGC
Statistics
Matches: 89, Mismatches: 10, Indels: 17
0.77 0.09 0.15
Matches are distributed among these distances:
50 8 0.09
51 6 0.07
52 2 0.02
53 7 0.08
54 12 0.13
55 18 0.20
56 1 0.01
57 29 0.33
58 6 0.07
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (53 bp):
CTTAAAAATATTAAAAAAATATAAAAATATAAAAATTATAAAAATGATAAAAA
Found at i:24011528 original size:10 final size:10
Alignment explanation
Indices: 24011399--24011644 Score: 83
Period size: 9 Copynumber: 26.4 Consensus size: 10
24011389 ATTTTCTTAT
24011399 AAAATAT-TA
1 AAAATATATA
24011408 AAAA-AT-TA
1 AAAATATATA
24011416 AAAATA-A-A
1 AAAATATATA
*
24011424 AAAGTATA-A
1 AAAATATATA
*
24011433 AAAGTAT-T-
1 AAAATATATA
24011441 -AAATAT-TA
1 AAAATATATA
24011449 AAAATAT-TA
1 AAAATATATA
*
24011458 AAATTGATAT-
1 AAAAT-ATATA
24011468 AAAAT-TATA
1 AAAATATATA
24011477 AAAAT-TATTA
1 AAAATATA-TA
*
24011487 AAAAT-GATA
1 AAAATATATA
*
24011496 AAAA-CT-TA
1 AAAATATATA
*
24011504 AAAATATTAGAA
1 AAAATA-TA-TA
24011516 AAAATATATA
1 AAAATATATA
*
24011526 AAAATCTA-A
1 AAAATATATA
*
24011535 TAAAT-TATA
1 AAAATATATA
24011544 AAAAT-TATA
1 AAAATATATA
*
24011553 AAATTA-ATA
1 AAAATATATA
* *
24011562 AAGCATAT-TT
1 AA-AATATATA
*
24011572 AAAATATTTA
1 AAAATATATA
* *
24011582 AAATTTTATA
1 AAAATATATA
**
24011592 AAAACGTATA
1 AAAATATATA
* *
24011602 AAAATTCTTTA
1 AAAA-TATATA
*
24011613 AAACT-TATA
1 AAAATATATA
24011622 AAAA-ATCATA
1 AAAATAT-ATA
24011632 AAAATATA-A
1 AAAATATATA
24011641 AAAA
1 AAAA
24011645 AATTAAATAT
Statistics
Matches: 183, Mismatches: 30, Indels: 48
0.70 0.11 0.18
Matches are distributed among these distances:
7 6 0.03
8 25 0.14
9 78 0.43
10 56 0.31
11 11 0.06
12 7 0.04
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (10 bp):
AAAATATATA
Found at i:24011606 original size:30 final size:29
Alignment explanation
Indices: 24011572--24011638 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 29
24011562 AAGCATATTT
* *
24011572 AAAATATTTAAAATTTTATAAAAACGT-ATA
1 AAAATATTTAAAA-CTTATAAAAA-ATCATA
*
24011602 AAAATTCTTTAAAACTTATAAAAAATCATA
1 AAAA-TATTTAAAACTTATAAAAAATCATA
24011632 AAAATAT
1 AAAATAT
24011639 AAAAAAAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
29 3 0.10
30 20 0.65
31 8 0.26
ACGTcount: A:0.58, C:0.06, G:0.01, T:0.34
Consensus pattern (29 bp):
AAAATATTTAAAACTTATAAAAAATCATA
Found at i:24011635 original size:20 final size:19
Alignment explanation
Indices: 24011589--24011644 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 19
24011579 TTAAAATTTT
*
24011589 ATAAAAACGTATAAAAATTC
1 ATAAAAAC-TATAAAAAATC
* *
24011609 TTTAAAACTTATAAAAAATC
1 ATAAAAAC-TATAAAAAATC
24011629 ATAAAAA-TATAAAAAA
1 ATAAAAACTATAAAAAA
24011645 AATTAAATAT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
18 9 0.30
20 21 0.70
ACGTcount: A:0.64, C:0.07, G:0.02, T:0.27
Consensus pattern (19 bp):
ATAAAAACTATAAAAAATC
Found at i:24011777 original size:21 final size:21
Alignment explanation
Indices: 24011733--24011797 Score: 66
Period size: 20 Copynumber: 3.2 Consensus size: 21
24011723 ATAAATATTG
* *
24011733 TAAAA-ATA-TAAAAATCTAA
1 TAAAATATATTAAAAATTTTA
*
24011752 TAAATTAT-TTATAAAA-TTTA
1 TAAAATATATTA-AAAATTTTA
24011772 TAAAATATATTAAAAATTTTA
1 TAAAATATATTAAAAATTTTA
24011793 TAAAA
1 TAAAA
24011798 ACCTGTAAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
19 4 0.11
20 17 0.46
21 16 0.43
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (21 bp):
TAAAATATATTAAAAATTTTA
Found at i:24019030 original size:27 final size:29
Alignment explanation
Indices: 24018982--24019045 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
24018972 TTAAAAAGTA
*
24018982 TTAAAAATATTTTTA-TAATTTTT-AATT
1 TTAAAAATATTTCTATTAATTTTTGAATT
*
24019009 TTAAAAATAATTTCTATT-TTTTTTGAATT
1 TTAAAAAT-ATTTCTATTAATTTTTGAATT
*
24019038 TTTAAAAT
1 TTAAAAAT
24019046 TTTAAAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
27 8 0.26
28 11 0.35
29 12 0.39
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.58
Consensus pattern (29 bp):
TTAAAAATATTTCTATTAATTTTTGAATT
Found at i:24019031 original size:28 final size:28
Alignment explanation
Indices: 24018982--24019045 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 28
24018972 TTAAAAAGTA
*
24018982 TTAAAAATATTTTTATAATTTTT-AATT
1 TTAAAAATATTTCTATAATTTTTGAATT
**
24019009 TTAAAAATAATTTCTATTTTTTTTGAATT
1 TTAAAAAT-ATTTCTATAATTTTTGAATT
*
24019038 TTTAAAAT
1 TTAAAAAT
24019046 TTTAAAAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 8 0.26
28 12 0.39
29 11 0.35
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.58
Consensus pattern (28 bp):
TTAAAAATATTTCTATAATTTTTGAATT
Found at i:24019724 original size:38 final size:38
Alignment explanation
Indices: 24019682--24019799 Score: 130
Period size: 38 Copynumber: 3.0 Consensus size: 38
24019672 AAATTAGTTC
*
24019682 AAAATCTTATGAACATTAAAATTTAATAGTTGGATATT
1 AAAATCTTATGACCATTAAAATTTAATAGTTGGATATT
* * ** *
24019720 AAAATCTTACGACCATTAAAATTTAATTGTTAAAAATT
1 AAAATCTTATGACCATTAAAATTTAATAGTTGGATATT
24019758 AACAATACTGTTATGACCATTAAAATTTAA-AGGTTGGATATT
1 AA-AAT-C--TTATGACCATTAAAATTTAATA-GTTGGATATT
24019800 GTTATTTTTA
Statistics
Matches: 64, Mismatches: 11, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
38 34 0.53
39 3 0.05
40 1 0.02
42 26 0.41
ACGTcount: A:0.44, C:0.08, G:0.10, T:0.37
Consensus pattern (38 bp):
AAAATCTTATGACCATTAAAATTTAATAGTTGGATATT
Found at i:24020797 original size:14 final size:14
Alignment explanation
Indices: 24020778--24020806 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
24020768 ATAGAAACAC
24020778 TCAAAAACCCAATA
1 TCAAAAACCCAATA
24020792 TCAAAAACCCAATA
1 TCAAAAACCCAATA
24020806 T
1 T
24020807 ATGTATCATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.55, C:0.28, G:0.00, T:0.17
Consensus pattern (14 bp):
TCAAAAACCCAATA
Found at i:24024449 original size:32 final size:32
Alignment explanation
Indices: 24024413--24024484 Score: 121
Period size: 32 Copynumber: 2.3 Consensus size: 32
24024403 TTTTATTTAA
*
24024413 CTTAGTGTATTTACTTTTTATAGGTTTTCCAT
1 CTTAGTGCATTTACTTTTTATAGGTTTTCCAT
24024445 CTTAGTGCATTTACTTTTTATAGGTTTTCCAT
1 CTTAGTGCATTTACTTTTTATAGGTTTTCCAT
24024477 C--AGTGCAT
1 CTTAGTGCAT
24024485 GAGAAGAGGT
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
30 7 0.18
32 32 0.82
ACGTcount: A:0.19, C:0.15, G:0.14, T:0.51
Consensus pattern (32 bp):
CTTAGTGCATTTACTTTTTATAGGTTTTCCAT
Found at i:24027300 original size:15 final size:15
Alignment explanation
Indices: 24027264--24027305 Score: 68
Period size: 16 Copynumber: 2.8 Consensus size: 15
24027254 TATATATATT
24027264 TTAAACATAAAAAAC
1 TTAAACATAAAAAAC
24027279 TTAAAACATAAAAAAC
1 TT-AAACATAAAAAAC
24027295 TTAAAC-TAAAA
1 TTAAACATAAAA
24027306 CTAAAAACTT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.19
15 6 0.23
16 15 0.58
ACGTcount: A:0.67, C:0.12, G:0.00, T:0.21
Consensus pattern (15 bp):
TTAAACATAAAAAAC
Found at i:24027313 original size:19 final size:21
Alignment explanation
Indices: 24027275--24027321 Score: 71
Period size: 19 Copynumber: 2.3 Consensus size: 21
24027265 TAAACATAAA
24027275 AAACTTAAAACATAAAAAACTT
1 AAAC-TAAAACATAAAAAACTT
24027297 AAACTAAAAC-T-AAAAACTT
1 AAACTAAAACATAAAAAACTT
24027316 AAACTA
1 AAACTA
24027322 GTATATTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 14 0.56
20 1 0.04
21 6 0.24
22 4 0.16
ACGTcount: A:0.64, C:0.15, G:0.00, T:0.21
Consensus pattern (21 bp):
AAACTAAAACATAAAAAACTT
Found at i:24028349 original size:12 final size:12
Alignment explanation
Indices: 24028332--24028359 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
24028322 GACCTATCAG
24028332 TTTTGATGAACA
1 TTTTGATGAACA
24028344 TTTTGATGAACA
1 TTTTGATGAACA
24028356 TTTT
1 TTTT
24028360 TTGGTAGCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.29, C:0.07, G:0.14, T:0.50
Consensus pattern (12 bp):
TTTTGATGAACA
Found at i:24041039 original size:14 final size:14
Alignment explanation
Indices: 24041020--24041048 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
24041010 CAAAATCTTA
24041020 AAATAATATATATT
1 AAATAATATATATT
24041034 AAATAATATATATT
1 AAATAATATATATT
24041048 A
1 A
24041049 TTTTTCTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AAATAATATATATT
Done.