Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 79 of 222
Found at i:24467148 original size:29 final size:29
Alignment explanation
Indices: 24467114--24467172 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
24467104 AAATAAGTTC
24467114 ATAGTGTTTCAATATGTAAATAAATTTCT
1 ATAGTGTTTCAATATGTAAATAAATTTCT
24467143 ATAGTGTTTCAATATGTAAATAAATTTCT
1 ATAGTGTTTCAATATGTAAATAAATTTCT
24467172 A
1 A
24467173 CTTGTATTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.39, C:0.07, G:0.10, T:0.44
Consensus pattern (29 bp):
ATAGTGTTTCAATATGTAAATAAATTTCT
Found at i:24467738 original size:66 final size:66
Alignment explanation
Indices: 24467662--24467807 Score: 292
Period size: 66 Copynumber: 2.2 Consensus size: 66
24467652 TTAATTGTTG
24467662 ATGTTTGTGTACTGTGGTTTCTATGAATGGCACATTGGTTGGTTGATTTTAGGACACTAAAATGG
1 ATGTTTGTGTACTGTGGTTTCTATGAATGGCACATTGGTTGGTTGATTTTAGGACACTAAAATGG
24467727 C
66 C
24467728 ATGTTTGTGTACTGTGGTTTCTATGAATGGCACATTGGTTGGTTGATTTTAGGACACTAAAATGG
1 ATGTTTGTGTACTGTGGTTTCTATGAATGGCACATTGGTTGGTTGATTTTAGGACACTAAAATGG
24467793 C
66 C
24467794 ATGTTTGTGTACTG
1 ATGTTTGTGTACTG
24467808 GTGAATGATG
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 80 1.00
ACGTcount: A:0.22, C:0.10, G:0.27, T:0.40
Consensus pattern (66 bp):
ATGTTTGTGTACTGTGGTTTCTATGAATGGCACATTGGTTGGTTGATTTTAGGACACTAAAATGG
C
Found at i:24468918 original size:35 final size:34
Alignment explanation
Indices: 24468860--24468927 Score: 82
Period size: 35 Copynumber: 2.0 Consensus size: 34
24468850 CTGAAGGACC
* *
24468860 AGTCGATAACCATCATCACGGTGTTGCTCTATAG
1 AGTCGATAACCATCATCACGGTGTCGCCCTATAG
** *
24468894 AGTCGATAGACCATTGTCATGGTGTCGCCCTATA
1 AGTCGATA-ACCATCATCACGGTGTCGCCCTATA
24468928 AAGCCAGTAG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
34 8 0.29
35 20 0.71
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (34 bp):
AGTCGATAACCATCATCACGGTGTCGCCCTATAG
Found at i:24472140 original size:31 final size:31
Alignment explanation
Indices: 24472104--24472175 Score: 94
Period size: 31 Copynumber: 2.3 Consensus size: 31
24472094 TTCGACCGTT
*
24472104 AATTTTGGT-TCTTATACTTTTCGAATTA-GA
1 AATTTTAGTCTCTT-TACTTTTCGAATTATGA
*
24472134 CAATTTTAGTCTCTTTACTTTTTGAATTATGA
1 -AATTTTAGTCTCTTTACTTTTCGAATTATGA
24472166 AATTTTAGTC
1 AATTTTAGTC
24472176 CTAACCCAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
31 31 0.84
32 6 0.16
ACGTcount: A:0.26, C:0.11, G:0.11, T:0.51
Consensus pattern (31 bp):
AATTTTAGTCTCTTTACTTTTCGAATTATGA
Found at i:24476358 original size:124 final size:124
Alignment explanation
Indices: 24476061--24476471 Score: 621
Period size: 125 Copynumber: 3.3 Consensus size: 124
24476051 ATTTATTAAG
* *
24476061 GAAATCGCTCCTACGTGGACGCGCTTTTGGTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGAC
1 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGAC
* *
24476126 GTTTCTAAGCAAATAGTATAAAAACGCTTCAAGCATGATGCTTTATTAGAAGAATTTCT
66 GTTTCTAAGCAAATAGTATAAAAACGCTTCAAGCAGGATGCTTTATCAGAAGAATTTCT
*
24476185 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCTTGAAAAAATAATTTCGAGTTGAC
1 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGAC
*
24476250 GTTTCTGAGCAAATAGTATAAAAAACGCTTCAAGCAGGATGCTTTATCAGAAGAATTTCT
66 GTTTCTAAGCAAATAGTAT-AAAAACGCTTCAAGCAGGATGCTTTATCAGAAGAATTTCT
* *
24476310 GAAATCGCTCTCATC-TAGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGA
1 GAAATCGCTCCCA-CGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGA
* * * * * *
24476374 CGTTTCTAAGCAAATAGTGTGTAAAATGCTTTAAGCAGGATGCTTTATGAGAAGAAATAT-T
65 CGTTTCTAAGCAAATAGTAT-AAAAACGCTTCAAGCAGGATGCTTTATCAGAAG-AATTTCT
* *
24476435 -AAATCGCTCCCACGTGGACGTGTTTTTGCTACAGTAG
1 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAG
24476472 CATGTTTGGG
Statistics
Matches: 262, Mismatches: 21, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
123 1 0.00
124 111 0.42
125 145 0.55
126 5 0.02
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (124 bp):
GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGAC
GTTTCTAAGCAAATAGTATAAAAACGCTTCAAGCAGGATGCTTTATCAGAAGAATTTCT
Found at i:24477385 original size:14 final size:14
Alignment explanation
Indices: 24477366--24477394 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
24477356 GTATACTCAC
24477366 CTCCAGCCCACATG
1 CTCCAGCCCACATG
24477380 CTCCAGCCCACATG
1 CTCCAGCCCACATG
24477394 C
1 C
24477395 ATAATGTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.52, G:0.14, T:0.14
Consensus pattern (14 bp):
CTCCAGCCCACATG
Found at i:24479722 original size:49 final size:49
Alignment explanation
Indices: 24479669--24479838 Score: 304
Period size: 49 Copynumber: 3.5 Consensus size: 49
24479659 TAAGAATATT
* *
24479669 AACTATTTTGTATTTTATTAAATGAAATAATATCAAAATATTCAAAATA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
*
24479718 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTTAAAATA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
*
24479767 AAATATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
24479816 AACTATTTTGTATTTTATTACAT
1 AACTATTTTGTATTTTATTACAT
24479839 TAATATAAAT
Statistics
Matches: 115, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 115 1.00
ACGTcount: A:0.46, C:0.08, G:0.03, T:0.44
Consensus pattern (49 bp):
AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
Found at i:24480283 original size:18 final size:18
Alignment explanation
Indices: 24480257--24480299 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
24480247 GACTAGAAAA
* * *
24480257 AGGAAACATATAAGGGTT
1 AGGATACATAAAAGGGCT
24480275 AGGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
24480293 AGGATAC
1 AGGATAC
24480300 CCACCTGGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.44, C:0.09, G:0.28, T:0.19
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:24482571 original size:31 final size:29
Alignment explanation
Indices: 24482533--24482599 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 29
24482523 AATTTCAAAA
*
24482533 TTATATATAAATTATAATTTAATGTGTAATT
1 TTATATATAAATTATAATTT--TGTATAATT
* *
24482564 TTATATATAAATTTTTATTTTGTATAATT
1 TTATATATAAATTATAATTTTGTATAATT
24482593 TTATATA
1 TTATATA
24482600 AGAAATTTTG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 15 0.45
31 18 0.55
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (29 bp):
TTATATATAAATTATAATTTTGTATAATT
Found at i:24482580 original size:27 final size:29
Alignment explanation
Indices: 24482550--24482608 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
24482540 TAAATTATAA
* *
24482550 TTTA-ATGTGTAATTTTATAT-ATAAATT
1 TTTATATGTATAATTTTATATAAGAAATT
*
24482577 TTTATTTTGTATAATTTTATATAAGAAATT
1 TTTA-TATGTATAATTTTATATAAGAAATT
24482607 TT
1 TT
24482609 GATTTTATCT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
27 4 0.15
29 14 0.54
30 8 0.31
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.58
Consensus pattern (29 bp):
TTTATATGTATAATTTTATATAAGAAATT
Found at i:24482624 original size:30 final size:29
Alignment explanation
Indices: 24482559--24482616 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 29
24482549 ATTTAATGTG
* * *
24482559 TAATTTTATATATAAATTTTTATTTTGTA
1 TAATTTTATATAGAAATTTTGATTTTATA
24482588 TAATTTTATATAAGAAATTTTGATTTTAT
1 TAATTTTATAT-AGAAATTTTGATTTTAT
24482617 CTTATTTTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (29 bp):
TAATTTTATATAGAAATTTTGATTTTATA
Found at i:24484539 original size:45 final size:45
Alignment explanation
Indices: 24484488--24484581 Score: 188
Period size: 45 Copynumber: 2.1 Consensus size: 45
24484478 AAAAGTGAGA
24484488 GGGAGTAAAAATTTTGGGAGAAAATAAAAGGTTTTCAGGGTTTTT
1 GGGAGTAAAAATTTTGGGAGAAAATAAAAGGTTTTCAGGGTTTTT
24484533 GGGAGTAAAAATTTTGGGAGAAAATAAAAGGTTTTCAGGGTTTTT
1 GGGAGTAAAAATTTTGGGAGAAAATAAAAGGTTTTCAGGGTTTTT
24484578 GGGA
1 GGGA
24484582 AATGGATTTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.35, C:0.02, G:0.31, T:0.32
Consensus pattern (45 bp):
GGGAGTAAAAATTTTGGGAGAAAATAAAAGGTTTTCAGGGTTTTT
Found at i:24486745 original size:16 final size:16
Alignment explanation
Indices: 24486694--24486756 Score: 72
Period size: 16 Copynumber: 3.9 Consensus size: 16
24486684 GTAATAAGTT
*
24486694 ATGCGAACCCTTATGC
1 ATGCGAACCCTTATGA
* * *
24486710 ATGAGAACCATTATGT
1 ATGCGAACCCTTATGA
24486726 ATGCGAACCCTTATGA
1 ATGCGAACCCTTATGA
* *
24486742 ATGCAAACACTTATG
1 ATGCGAACCCTTATG
24486757 GATTTATTAT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.27
Consensus pattern (16 bp):
ATGCGAACCCTTATGA
Found at i:24486867 original size:24 final size:24
Alignment explanation
Indices: 24486839--24486889 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
24486829 ATATTGTGCG
*
24486839 AACCCTCATATGATTTAATATGCA
1 AACCCTCATATGAATTAATATGCA
* *
24486863 AACCCTCATGTGAATTAGTATGCA
1 AACCCTCATATGAATTAATATGCA
24486887 AAC
1 AAC
24486890 TATCATGTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.29
Consensus pattern (24 bp):
AACCCTCATATGAATTAATATGCA
Found at i:24500729 original size:22 final size:23
Alignment explanation
Indices: 24500696--24500738 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
24500686 AATATAAAGT
24500696 AAAATAAAAGAAATA-AAAACAAC
1 AAAATAAAAGAAA-AGAAAACAAC
24500719 AAAA-AAAAGAAAAGAAAACA
1 AAAATAAAAGAAAAGAAAACA
24500739 GAGGCATCGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 1 0.05
22 14 0.74
23 4 0.21
ACGTcount: A:0.81, C:0.07, G:0.07, T:0.05
Consensus pattern (23 bp):
AAAATAAAAGAAAAGAAAACAAC
Found at i:24503315 original size:21 final size:23
Alignment explanation
Indices: 24503279--24503329 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 23
24503269 GAACCTTCAA
*
24503279 GCAAACCTTATGTGATTTAGT-T
1 GCAAACCTTATGTGATCTAGTAT
*
24503301 GCGAACCTT-TGTGATCTAGTAT
1 GCAAACCTTATGTGATCTAGTAT
24503323 GCAAACC
1 GCAAACC
24503330 CTTACATAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 10 0.40
22 15 0.60
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (23 bp):
GCAAACCTTATGTGATCTAGTAT
Found at i:24509422 original size:29 final size:29
Alignment explanation
Indices: 24509361--24509423 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 29
24509351 ATACTTTTAT
* * * *
24509361 AAAATATCTAATGTGGTACATGTACTTTG
1 AAAATATCTAATGTAGTACATGAACTGTC
* *
24509390 AAAATTTCTAATGTAGTACTTGAACTGTC
1 AAAATATCTAATGTAGTACATGAACTGTC
24509419 AAAAT
1 AAAAT
24509424 GATTTTATTA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (29 bp):
AAAATATCTAATGTAGTACATGAACTGTC
Found at i:24515781 original size:51 final size:50
Alignment explanation
Indices: 24515594--24515782 Score: 186
Period size: 51 Copynumber: 3.7 Consensus size: 50
24515584 TGAAAGTCAT
* * * * * *
24515594 GGTCACGTGTGTAGTACTATATGCAGGCTACTACGTGTACCAAAATGATA
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACGATAGTGATA
** * * *
24515644 GGTCGTATTTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAGCT--TC
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTA-C-GATAG-TGATA
* * *
24515695 GATCACGTGTGTAGTACTATGTGTAGGCTACTATGTGTATCGGATAGTGAT-
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTA-C-GATAGTGATA
24515746 GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTG
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTG
24515783 AACCCGTATC
Statistics
Matches: 111, Mismatches: 23, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
50 33 0.30
51 74 0.67
52 3 0.03
53 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.32
Consensus pattern (50 bp):
GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACGATAGTGATA
Found at i:24518333 original size:22 final size:22
Alignment explanation
Indices: 24518305--24518349 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
24518295 TGTGTATACC
24518305 AGAATGTGTTAGTGAATTACAT
1 AGAATGTGTTAGTGAATTACAT
24518327 AGAATGTGTTAGTGAATTACAT
1 AGAATGTGTTAGTGAATTACAT
24518349 A
1 A
24518350 TTCGTAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.38, C:0.04, G:0.22, T:0.36
Consensus pattern (22 bp):
AGAATGTGTTAGTGAATTACAT
Found at i:24522706 original size:101 final size:102
Alignment explanation
Indices: 24522590--24522774 Score: 293
Period size: 101 Copynumber: 1.8 Consensus size: 102
24522580 AAAGTGATGG
**
24522590 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGA-A-TGATAGGTCGTATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATAGTGAT-GGTCACATGTGTAGT
*
24522653 ACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
65 ACTATGTGCAAGCTACTATGCGTACCGGATAGCTTCGA
* *
24522691 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGTGATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATAGTGATGGTCACATGTGTAGTA
*
24522756 CTATGTGCAAGTTACTATG
66 CTATGTGCAAGCTACTATG
24522775 TGAACCGGTA
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
101 40 0.53
102 32 0.42
103 4 0.05
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATAGTGATGGTCACATGTGTAGTA
CTATGTGCAAGCTACTATGCGTACCGGATAGCTTCGA
Found at i:24522720 original size:51 final size:49
Alignment explanation
Indices: 24522589--24522782 Score: 205
Period size: 51 Copynumber: 3.9 Consensus size: 49
24522579 GAAAGTGATG
*
24522589 GTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAATGATAGGTC
1 GTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACC-G---GATAGTTC
* *
24522642 GT-A--TGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTC
1 GTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAG-TTC
* *
24522689 GATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGTGATG
1 G-TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGT--TC
* * * * *
24522741 GTCACATGTGTAGTACTATGTGCAAGTTACTATGTGAACCGG
1 GTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG
24522783 TATCATTAAT
Statistics
Matches: 121, Mismatches: 13, Indels: 16
0.81 0.09 0.11
Matches are distributed among these distances:
46 5 0.04
47 3 0.02
48 1 0.01
49 2 0.02
50 33 0.27
51 72 0.60
52 3 0.02
53 2 0.02
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (49 bp):
GTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTTC
Found at i:24525548 original size:77 final size:76
Alignment explanation
Indices: 24525451--24525755 Score: 405
Period size: 76 Copynumber: 4.0 Consensus size: 76
24525441 TTAATATCTC
* * * * *
24525451 TTTTTGGAAATAAACCAAATTTGGAATGAAATTGTTGAACGGCGGGAATTAATCCCGAAAATATT
1 TTTTTGG-AATAAAACAAATTTGGAATAAAATCGTTGAACGGCGGGAATCAATCCCGAAAAGATT
24525516 TTATTTTACTCA
65 TTATTTTACTCA
* * *
24525528 TTTTTGGAATAAAACAAAATTGGAATAAAATCGTTGAAAGGCGGGAATCAAT-CCGAAACGATTT
1 TTTTTGGAATAAAACAAATTTGGAATAAAATCGTTGAACGGCGGGAATCAATCCCGAAAAGATTT
*
24525592 TATATTACTCA
66 TATTTTACTCA
* * *
24525603 TTTTTGGAAATAAAACAAATTTGGAATAAAATCGTTGAACGGCGGGAATCGATCTCGAAACGATT
1 TTTTTGG-AATAAAACAAATTTGGAATAAAATCGTTGAACGGCGGGAATCAATCCCGAAAAGATT
*
24525668 TTATTTTACTCGT
65 TTATTTTACTC-A
* * * * *
24525681 TTTTTGAAATAAAACAATTTTAGAATAAAATCGTTGAACGGAGGGAATCAATCCCGAAACGATTT
1 TTTTTGGAATAAAACAAATTTGGAATAAAATCGTTGAACGGCGGGAATCAATCCCGAAAAGA-TT
24525746 TTATTTTACT
65 TTATTTTACT
24525756 TTTAATTTCC
Statistics
Matches: 203, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
75 27 0.13
76 81 0.40
77 77 0.38
78 18 0.09
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (76 bp):
TTTTTGGAATAAAACAAATTTGGAATAAAATCGTTGAACGGCGGGAATCAATCCCGAAAAGATTT
TATTTTACTCA
Found at i:24525581 original size:76 final size:77
Alignment explanation
Indices: 24525451--24525755 Score: 425
Period size: 77 Copynumber: 4.0 Consensus size: 77
24525441 TTAATATCTC
* * * * *
24525451 TTTTTGGAAATAAACCAAATTTGGAATGAAATTGTTGAACGGCGGGAATTAATCCCGAAAATATT
1 TTTTTGGAAATAAAACAAATTTGGAATAAAATCGTTGAACGGCGGGAATCAATCCCGAAAAGATT
24525516 TTATTTTACTCA
66 TTATTTTACTCA
* * *
24525528 TTTTTGG-AATAAAACAAAATTGGAATAAAATCGTTGAAAGGCGGGAATCAAT-CCGAAACGATT
1 TTTTTGGAAATAAAACAAATTTGGAATAAAATCGTTGAACGGCGGGAATCAATCCCGAAAAGATT
*
24525591 TTATATTACTCA
66 TTATTTTACTCA
* * *
24525603 TTTTTGGAAATAAAACAAATTTGGAATAAAATCGTTGAACGGCGGGAATCGATCTCGAAACGATT
1 TTTTTGGAAATAAAACAAATTTGGAATAAAATCGTTGAACGGCGGGAATCAATCCCGAAAAGATT
*
24525668 TTATTTTACTCG
66 TTATTTTACTCA
* * * * *
24525680 TTTTTTGAAATAAAACAATTTTAGAATAAAATCGTTGAACGGAGGGAATCAATCCCGAAACGATT
1 TTTTTGGAAATAAAACAAATTTGGAATAAAATCGTTGAACGGCGGGAATCAATCCCGAAAAGA-T
24525745 TTTATTTTACT
65 TTTATTTTACT
24525756 TTTAATTTCC
Statistics
Matches: 204, Mismatches: 21, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
75 27 0.13
76 81 0.40
77 84 0.41
78 12 0.06
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (77 bp):
TTTTTGGAAATAAAACAAATTTGGAATAAAATCGTTGAACGGCGGGAATCAATCCCGAAAAGATT
TTATTTTACTCA
Found at i:24536170 original size:17 final size:16
Alignment explanation
Indices: 24536097--24536245 Score: 79
Period size: 17 Copynumber: 8.7 Consensus size: 16
24536087 TTAATCATTT
24536097 TAATATTAAATTAATA
1 TAATATTAAATTAATA
*
24536113 TAATACTTATCAAGATAAATA
1 TAATA--T-T-AA-ATTAATA
* * *
24536134 TTAGATTAAATTAATC
1 TAATATTAAATTAATA
24536150 TAATATTAAATTTAATA
1 TAATATTAAA-TTAATA
24536167 TAATATTAAGA-TAATCA
1 TAATATTAA-ATTAAT-A
24536184 CTTTAATATTAAATTAATA
1 ---TAATATTAAATTAATA
* * * *
24536203 AAATACT--ATCAAGA
1 TAATATTAAATTAATA
*
24536217 TAAGTATTAAATTATATT
1 TAA-TATTAAATTA-ATA
24536235 TAATATTAAAT
1 TAATATTAAAT
24536246 CTATTAAAAT
Statistics
Matches: 100, Mismatches: 17, Indels: 31
0.68 0.11 0.21
Matches are distributed among these distances:
14 7 0.07
15 3 0.03
16 27 0.27
17 28 0.28
18 7 0.07
19 4 0.04
20 15 0.15
21 9 0.09
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (16 bp):
TAATATTAAATTAATA
Found at i:24536590 original size:20 final size:20
Alignment explanation
Indices: 24536544--24536591 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
24536534 CCCGGTTCAA
24536544 CCAATTTTTGGGTCTTAGTC
1 CCAATTTTTGGGTCTTAGTC
* * *
24536564 TCGATTTTTGGTTCTTA-TGC
1 CCAATTTTTGGGTCTTAGT-C
24536584 CCAATTTT
1 CCAATTTT
24536592 CGAACTCAGG
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
19 1 0.05
20 21 0.95
ACGTcount: A:0.15, C:0.19, G:0.17, T:0.50
Consensus pattern (20 bp):
CCAATTTTTGGGTCTTAGTC
Found at i:24537124 original size:17 final size:17
Alignment explanation
Indices: 24537102--24537136 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
24537092 AATGGCCTCA
24537102 TCATGTGTGTGTTACCC
1 TCATGTGTGTGTTACCC
24537119 TCATGTGTGTGTTACCC
1 TCATGTGTGTGTTACCC
24537136 T
1 T
24537137 TATATGATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.11, C:0.23, G:0.23, T:0.43
Consensus pattern (17 bp):
TCATGTGTGTGTTACCC
Found at i:24539517 original size:13 final size:14
Alignment explanation
Indices: 24539498--24539568 Score: 71
Period size: 13 Copynumber: 5.2 Consensus size: 14
24539488 TCATCAAGAG
24539498 GAAAATGATTATAT
1 GAAAATGATTATAT
24539512 -AAAATGATTATAT
1 GAAAATGATTATAT
*
24539525 GAACCA-G-TTATAT
1 GAA-AATGATTATAT
24539538 GGAAAATGCA-TATAT
1 -GAAAATG-ATTATAT
24539553 -AAAATGATTATAT
1 GAAAATGATTATAT
24539566 GAA
1 GAA
24539569 TTTTTTATAT
Statistics
Matches: 47, Mismatches: 2, Indels: 16
0.72 0.03 0.25
Matches are distributed among these distances:
12 1 0.02
13 31 0.66
14 9 0.19
15 6 0.13
ACGTcount: A:0.49, C:0.04, G:0.14, T:0.32
Consensus pattern (14 bp):
GAAAATGATTATAT
Found at i:24540584 original size:15 final size:15
Alignment explanation
Indices: 24540564--24540607 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
24540554 CTATGTATGC
* *
24540564 AAAACATAATAGACG
1 AAAACACAAAAGACG
24540579 AAAACACAAAAGACG
1 AAAACACAAAAGACG
*
24540594 GAAACACAAAAGAC
1 AAAACACAAAAGAC
24540608 ATAATAGTGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.64, C:0.18, G:0.14, T:0.05
Consensus pattern (15 bp):
AAAACACAAAAGACG
Found at i:24571163 original size:16 final size:18
Alignment explanation
Indices: 24571137--24571169 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
24571127 TTAAATTAAC
24571137 TAAACTAA-TTTCTCAAT
1 TAAACTAATTTTCTCAAT
24571154 TAAA-TAATTTTCTCAA
1 TAAACTAATTTTCTCAA
24571170 CCCAATTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.42
Consensus pattern (18 bp):
TAAACTAATTTTCTCAAT
Found at i:24579790 original size:3 final size:3
Alignment explanation
Indices: 24579782--24579820 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
24579772 CATTCCTCAC
24579782 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
24579821 CACAAAACAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:24582097 original size:11 final size:11
Alignment explanation
Indices: 24582081--24582107 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
24582071 AGGATAAGGA
24582081 GATGGGTCAAG
1 GATGGGTCAAG
24582092 GATGGGTCAAG
1 GATGGGTCAAG
24582103 GATGG
1 GATGG
24582108 AATACAGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.26, C:0.07, G:0.48, T:0.19
Consensus pattern (11 bp):
GATGGGTCAAG
Found at i:24585716 original size:3 final size:3
Alignment explanation
Indices: 24585708--24585736 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
24585698 GAGTAAAAAC
24585708 AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
24585737 AAGTTCGAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:24586214 original size:32 final size:31
Alignment explanation
Indices: 24586159--24586219 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 31
24586149 GTGTTCACTT
24586159 AACTATTCAAAAATTTTAGTTTAAGTCATTG
1 AACTATTCAAAAATTTTAGTTTAAGTCATTG
24586190 AACTATTCAAAAAAATTTTA-TTTAAGTCAT
1 AACTATTC--AAAAATTTTAGTTTAAGTCAT
24586220 GAGGCTGTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
31 8 0.29
32 10 0.36
33 10 0.36
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.41
Consensus pattern (31 bp):
AACTATTCAAAAATTTTAGTTTAAGTCATTG
Found at i:24588502 original size:43 final size:42
Alignment explanation
Indices: 24588422--24588503 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 42
24588412 TCAATAGAAA
* * *
24588422 TAAAAGTTTAATATTGAATAAAAAATTGAATTTTTAATGCAC
1 TAAAAGTTTAATATTGAATAAAAAAGTAAAATTTTAATGCAC
*
24588464 TAAAAGTTTAA-ATTTACATAAAAAAAGTAAAATTTTAATG
1 TAAAAGTTTAATATTGA-AT-AAAAAAGTAAAATTTTAATG
24588504 GGTATTTAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
41 4 0.12
42 13 0.38
43 17 0.50
ACGTcount: A:0.51, C:0.04, G:0.09, T:0.37
Consensus pattern (42 bp):
TAAAAGTTTAATATTGAATAAAAAAGTAAAATTTTAATGCAC
Found at i:24588531 original size:43 final size:44
Alignment explanation
Indices: 24588484--24588571 Score: 124
Period size: 43 Copynumber: 2.0 Consensus size: 44
24588474 AATTTACATA
*
24588484 AAAAAAGTAAAATTTTAATGGGTATTTAATGAAAATAA-TAAAT
1 AAAAAACTAAAATTTTAATGGGTATTTAATGAAAATAATTAAAT
** * *
24588527 AAAAAACTAAAATTTTAATTTGTGTTTAATGAGAATAATTAAAT
1 AAAAAACTAAAATTTTAATGGGTATTTAATGAAAATAATTAAAT
24588571 A
1 A
24588572 TTATGATTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
43 33 0.85
44 6 0.15
ACGTcount: A:0.53, C:0.01, G:0.10, T:0.35
Consensus pattern (44 bp):
AAAAAACTAAAATTTTAATGGGTATTTAATGAAAATAATTAAAT
Found at i:24589562 original size:22 final size:22
Alignment explanation
Indices: 24589515--24589567 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
24589505 AACTAGAATT
* *
24589515 GTATCAGTAAAAGGGTTCCCAT
1 GTATCGGTAAAAGGGTTCCCAA
* *
24589537 GTATTGGTAAAAGGGTTCTCAA
1 GTATCGGTAAAAGGGTTCCCAA
24589559 GTATCGGTA
1 GTATCGGTA
24589568 GAAGTTTGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.30, C:0.13, G:0.26, T:0.30
Consensus pattern (22 bp):
GTATCGGTAAAAGGGTTCCCAA
Found at i:24591503 original size:73 final size:72
Alignment explanation
Indices: 24591426--24591609 Score: 181
Period size: 73 Copynumber: 2.5 Consensus size: 72
24591416 CGGGTTGTAT
* * * **
24591426 ATCGGGAAGCTCATAAGAGCCATAATTGGGAAGCTCATGTGAGCCAATAACAGTTAGCTTCGAAG
1 ATCGGGAAGCTCATAAGAGCCATAATCGGGAAGCTCAAGCGAGCC-ATAACAGGAAGCTTCGAAG
24591491 AGCCATTA
65 AGCCATTA
* * * * * **
24591499 ATCGGGAAGCTC-TAGATAGCCATAAATCGGGAAGTTTAAGCGAGCCATATCGGGAAGCTTCGGG
1 ATCGGGAAGCTCATA-AGAGCCAT-AATCGGGAAGCTCAAGCGAGCCATAACAGGAAGCTTCGAA
24591563 GAGCCATTA
64 GAGCCATTA
* * *
24591572 ATCAGGAAGCTCAAAAAGAGCCTTTAATCGGGAAGCTC
1 ATCGGGAAGCTC-ATAAGAGCC-ATAATCGGGAAGCTC
24591610 TAAAGAGCCA
Statistics
Matches: 88, Mismatches: 18, Indels: 9
0.77 0.16 0.08
Matches are distributed among these distances:
72 2 0.02
73 51 0.58
74 33 0.38
75 2 0.02
ACGTcount: A:0.33, C:0.20, G:0.27, T:0.21
Consensus pattern (72 bp):
ATCGGGAAGCTCATAAGAGCCATAATCGGGAAGCTCAAGCGAGCCATAACAGGAAGCTTCGAAGA
GCCATTA
Found at i:24591519 original size:25 final size:25
Alignment explanation
Indices: 24591426--24591620 Score: 111
Period size: 25 Copynumber: 7.9 Consensus size: 25
24591416 CGGGTTGTAT
24591426 ATCGGGAAGCTCATA-AGAGCCA-TA
1 ATCGGGAAGCTC-TAGAGAGCCATTA
* * *
24591450 ATTGGGAAGCTC-ATGTGAGCCAATA
1 ATCGGGAAGCTCTA-GAGAGCCATTA
* ** *
24591475 A-CAGTTAGCT-TCGAAGAGCCATTA
1 ATCGGGAAGCTCTAG-AGAGCCATTA
* *
24591499 ATCGGGAAGCTCTAGATAGCCATAA
1 ATCGGGAAGCTCTAGAGAGCCATTA
* *
24591524 ATCGGGAAG-TTTAAGCGAGCCA-T-
1 ATCGGGAAGCTCT-AGAGAGCCATTA
* *
24591547 ATCGGGAAGCT-TCGGGGAGCCATTA
1 ATCGGGAAGCTCT-AGAGAGCCATTA
* * * *
24591572 ATCAGGAAGCTCAAAAAGAGCCTTTA
1 ATCGGGAAGCTC-TAGAGAGCCATTA
*
24591598 ATCGGGAAGCTCTAAAGAGCCAT
1 ATCGGGAAGCTCTAGAGAGCCAT
24591621 ATAACAGGAC
Statistics
Matches: 127, Mismatches: 31, Indels: 25
0.69 0.17 0.14
Matches are distributed among these distances:
22 1 0.01
23 18 0.14
24 35 0.28
25 52 0.41
26 21 0.17
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (25 bp):
ATCGGGAAGCTCTAGAGAGCCATTA
Found at i:24591598 original size:26 final size:25
Alignment explanation
Indices: 24591563--24591642 Score: 83
Period size: 26 Copynumber: 3.2 Consensus size: 25
24591553 AAGCTTCGGG
24591563 GAGCCATTAATCAGGAAGCTCAAAAA
1 GAGCCATTAATCAGGAAGCTC-AAAA
* * *
24591589 GAGCCTTTAATCGGGAAGCTCTAAA
1 GAGCCATTAATCAGGAAGCTCAAAA
*
24591614 GAGCCATATAA-CAGGACA-CTCATAA
1 GAGCCAT-TAATCAGGA-AGCTCAAAA
24591639 GAGC
1 GAGC
24591643 TATGATGTGT
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
25 22 0.49
26 23 0.51
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.17
Consensus pattern (25 bp):
GAGCCATTAATCAGGAAGCTCAAAA
Found at i:24593685 original size:29 final size:28
Alignment explanation
Indices: 24593653--24593766 Score: 106
Period size: 29 Copynumber: 3.9 Consensus size: 28
24593643 AAGGCTAAGA
*
24593653 TAGCCACAAAAGGATCCATTTAACAGAGG
1 TAGCCAC-AAAGGATCCTTTTAACAGAGG
* * * *
24593682 TAGCCACAAAGACATTCTTTTAATAGAGT
1 TAGCCACAAAG-GATCCTTTTAACAGAGG
*
24593711 TTGCCACAAAGGCATCCTTTTAACAGAGG
1 TAGCCACAAAGG-ATCCTTTTAACAGAGG
24593740 TCA-CCACAAA-GACTTCCTTTTAACAGA
1 T-AGCCACAAAGGA--TCCTTTTAACAGA
24593767 TATTGCTACA
Statistics
Matches: 69, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
27 1 0.01
28 5 0.07
29 63 0.91
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.25
Consensus pattern (28 bp):
TAGCCACAAAGGATCCTTTTAACAGAGG
Found at i:24593733 original size:58 final size:58
Alignment explanation
Indices: 24593655--24593845 Score: 180
Period size: 58 Copynumber: 3.3 Consensus size: 58
24593645 GGCTAAGATA
* *
24593655 GCCACAAAAGG-ATCCATTTAACAGAGGTAGCCACAAAGACATTCTTTTAATAGAGTTT
1 GCCAC-AAAGGCATCCTTTTAACAGAGGTAGCCACAAAGACATTCTTTTAACAGAGTTT
24593713 GCCACAAAGGCATCCTTTTAACAGAGGTCA-CCACAAAGAC-TTCCTTTTAACAGA-TATT
1 GCCACAAAGGCATCCTTTTAACAGAGGT-AGCCACAAAGACATT-CTTTTAACAGAGT-TT
* * * * * * * * * *
24593771 GCTACAAATGCTTCCTTTTAATAGAGATTGCCACAAAAACA-TATTTT--CAGAGATA
1 GCCACAAAGGCATCCTTTTAACAGAGGTAGCCACAAAGACATTCTTTTAACAGAGTTT
*
24593826 GCCACAAAGGCGTCCTTTTA
1 GCCACAAAGGCATCCTTTTA
24593846 TAGAAATTGC
Statistics
Matches: 111, Mismatches: 15, Indels: 17
0.78 0.10 0.12
Matches are distributed among these distances:
55 22 0.20
57 12 0.11
58 76 0.68
59 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.27
Consensus pattern (58 bp):
GCCACAAAGGCATCCTTTTAACAGAGGTAGCCACAAAGACATTCTTTTAACAGAGTTT
Found at i:24593777 original size:29 final size:29
Alignment explanation
Indices: 24593671--24593862 Score: 135
Period size: 29 Copynumber: 6.8 Consensus size: 29
24593661 AAAGGATCCA
* *
24593671 TTTAACAGAGGTAGCCACAAAGACATT-CT
1 TTTAACAGAGATTGCCACAAAGAC-TTCCT
* * * *
24593700 TTTAATAGAGTTTGCCACAAAGGCATCCT
1 TTTAACAGAGATTGCCACAAAGACTTCCT
* **
24593729 TTTAACAGAGGTCACCACAAAGACTTCCT
1 TTTAACAGAGATTGCCACAAAGACTTCCT
* *
24593758 TTTAACAGATATTGCTACAAATG-CTTCCT
1 TTTAACAGAGATTGCCACAAA-GACTTCCT
* * * *
24593787 TTTAATAGAGATTGCCACAAAAACAT-AT
1 TTTAACAGAGATTGCCACAAAGACTTCCT
* * *
24593815 TTT--CAGAGATAGCCACAAAGGCGTCCT
1 TTTAACAGAGATTGCCACAAAGACTTCCT
* * *
24593842 TTT-ATAGAAATTGCTACAAAG
1 TTTAACAGAGATTGCCACAAAG
24593863 GAACTTCTTT
Statistics
Matches: 126, Mismatches: 32, Indels: 11
0.75 0.19 0.07
Matches are distributed among these distances:
26 16 0.13
27 4 0.03
28 18 0.14
29 87 0.69
30 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (29 bp):
TTTAACAGAGATTGCCACAAAGACTTCCT
Found at i:24597864 original size:45 final size:44
Alignment explanation
Indices: 24597791--24597947 Score: 188
Period size: 45 Copynumber: 3.5 Consensus size: 44
24597781 CACATAGCAT
* * * * * *
24597791 CACCCTTATAGTCAATGATACTCGGTGGAATCAGCACATAACAAC
1 CACCTTTATAATCAATG-TACCCAGTGGAATCAGCACACAGCAAC
* * *
24597836 CACCTTCATATTCAATAGTACCCAGTGGAACCAGCACACAGCAAC
1 CACCTTTATAATCAAT-GTACCCAGTGGAATCAGCACACAGCAAC
*
24597881 CACCTTTATAATCAATGATACCCGGTGGAATCAGCACACAGCAAC
1 CACCTTTATAATCAATG-TACCCAGTGGAATCAGCACACAGCAAC
24597926 CACCTTTATAATCAATGGTACC
1 CACCTTTATAATCAAT-GTACC
24597948 TGGTACACGT
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
44 1 0.01
45 94 0.97
46 2 0.02
ACGTcount: A:0.35, C:0.29, G:0.14, T:0.22
Consensus pattern (44 bp):
CACCTTTATAATCAATGTACCCAGTGGAATCAGCACACAGCAAC
Found at i:24610134 original size:27 final size:26
Alignment explanation
Indices: 24610117--24610186 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
24610107 ATATTAAGTC
24610117 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
24610144 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
24610172 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
24610187 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:24610180 original size:28 final size:28
Alignment explanation
Indices: 24610117--24610214 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
24610107 ATATTAAGTC
*
24610117 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
24610144 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
24610172 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
24610201 CGCACACTTAGTGC
1 CGCACACTTAGTGC
24610215 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:24610678 original size:12 final size:12
Alignment explanation
Indices: 24610661--24610687 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
24610651 TGGGCATACT
24610661 TATGTATATATA
1 TATGTATATATA
24610673 TATGTATATATA
1 TATGTATATATA
24610685 TAT
1 TAT
24610688 ACTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:24614742 original size:20 final size:21
Alignment explanation
Indices: 24614717--24614772 Score: 64
Period size: 20 Copynumber: 2.8 Consensus size: 21
24614707 AGTTAATTTT
24614717 TATCGATACTTTATATA-AAG
1 TATCGATACTTTATATATAAG
*
24614737 TATCGAT-CTTTAGGA-ATAAG
1 TATCGATACTTTA-TATATAAG
*
24614757 TATCGATATTTTATAT
1 TATCGATACTTTATAT
24614773 TGGTATTGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
19 6 0.21
20 19 0.66
21 4 0.14
ACGTcount: A:0.36, C:0.09, G:0.12, T:0.43
Consensus pattern (21 bp):
TATCGATACTTTATATATAAG
Found at i:24625951 original size:21 final size:21
Alignment explanation
Indices: 24625925--24625970 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
24625915 ACATTGATCG
24625925 TTCCATACAAACGATACATTC
1 TTCCATACAAACGATACATTC
* * *
24625946 TTCCATACAAATGGTACATTT
1 TTCCATACAAACGATACATTC
24625967 TTCC
1 TTCC
24625971 GTAGAAACTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.26, G:0.07, T:0.35
Consensus pattern (21 bp):
TTCCATACAAACGATACATTC
Found at i:24644422 original size:13 final size:13
Alignment explanation
Indices: 24644393--24644431 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
24644383 AATTTTGTTT
*
24644393 TTTTATTATTATTA
1 TTTTATTAAT-TTA
*
24644407 TTTTATTCATTTA
1 TTTTATTAATTTA
24644420 TTTTATTAATTT
1 TTTTATTAATTT
24644432 TCATTGTGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 14 0.64
14 8 0.36
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTTATTAATTTA
Found at i:24649472 original size:27 final size:27
Alignment explanation
Indices: 24649441--24649864 Score: 474
Period size: 27 Copynumber: 15.7 Consensus size: 27
24649431 ATACCTTCGA
* * *
24649441 AGGGTAAAATGATCGAAATACCCTCAAT
1 AGGGTAAAATGACCGTAATACCC-CTAT
* * ** *
24649469 -GGGTAAAATGACTGAAATGGCCTTAT
1 AGGGTAAAATGACCGTAATACCCCTAT
*
24649495 AGGGTAAAATGACCGTAATACCCCGAT
1 AGGGTAAAATGACCGTAATACCCCTAT
* *
24649522 AGGATAAAATGACCGTAATGCCCCTAT
1 AGGGTAAAATGACCGTAATACCCCTAT
*
24649549 AGGGTAAAATGACCGTAATACCCCGAT
1 AGGGTAAAATGACCGTAATACCCCTAT
* * *
24649576 AGGATAAAATGACCGTAATGCCCCTGT
1 AGGGTAAAATGACCGTAATACCCCTAT
24649603 AGGGTAAAATGACCGTAATACCCCTAT
1 AGGGTAAAATGACCGTAATACCCCTAT
*
24649630 AGGGTAAAATGACCGTAATGCCTCC-AT
1 AGGGTAAAATGACCGTAATACC-CCTAT
* * **
24649657 AGGGTAAAATAACCGAAATACCCCCGT
1 AGGGTAAAATGACCGTAATACCCCTAT
* **
24649684 AGGATAAAATGACCGTAATACCCCGGT
1 AGGGTAAAATGACCGTAATACCCCTAT
* *
24649711 AGGGTAAAATGACCATAATGCCCCTAT
1 AGGGTAAAATGACCGTAATACCCCTAT
* * **
24649738 AGGGTAAAATGATCGTAGTACCTTTAT
1 AGGGTAAAATGACCGTAATACCCCTAT
*
24649765 AGGGTAAAATGACCGTAATACCCCTGT
1 AGGGTAAAATGACCGTAATACCCCTAT
* * * *
24649792 AGGGTAAAATGATCGTAATGCCTCTGT
1 AGGGTAAAATGACCGTAATACCCCTAT
* * *
24649819 AGGGTAAAATTACTGTAATACCCCTGT
1 AGGGTAAAATGACCGTAATACCCCTAT
*
24649846 AGGGTAAAATGACCATAAT
1 AGGGTAAAATGACCGTAAT
24649865 GCCCTGGTGG
Statistics
Matches: 332, Mismatches: 61, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
26 4 0.01
27 326 0.98
28 2 0.01
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (27 bp):
AGGGTAAAATGACCGTAATACCCCTAT
Found at i:24650169 original size:64 final size:62
Alignment explanation
Indices: 24650082--24650293 Score: 244
Period size: 64 Copynumber: 3.3 Consensus size: 62
24650072 TTTGTTGCGA
* * *
24650082 TGCTACTGATGGCTTTGTGCCGGTCATAGTACCATTACTGATGGCTTTGTGTCAATCATATTAC
1 TGCTACTGATGGCTTTGTGCCGGTCAT-GTACCATTACTGATGGCTGTGTG-CGATCATATCAC
* * * * ** * *
24650146 TGTTACCGATGGCTGTGTGCCGGTCATTTCATTATTACTGATGGCAGTGTGCTGATCATATCAA
1 TGCTACTGATGGCTTTGTGCCGGTCATGT-ACCATTACTGATGGCTGTGTGC-GATCATATCAC
* *
24650210 TGCTACTGATGGCTTTGTGCCGATCATGTTACCATTACTGATGCCTGTGTGCCGATCATATCAC
1 TGCTACTGATGGCTTTGTGCCGGTCATG-TACCATTACTGATGGCTGTGTG-CGATCATATCAC
*
24650274 TGCTATTGATGGCTTTGTGC
1 TGCTACTGATGGCTTTGTGC
24650294 TAATCACATT
Statistics
Matches: 122, Mismatches: 22, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
63 2 0.02
64 118 0.97
65 2 0.02
ACGTcount: A:0.19, C:0.21, G:0.24, T:0.37
Consensus pattern (62 bp):
TGCTACTGATGGCTTTGTGCCGGTCATGTACCATTACTGATGGCTGTGTGCGATCATATCAC
Found at i:24650284 original size:32 final size:32
Alignment explanation
Indices: 24650082--24650293 Score: 156
Period size: 32 Copynumber: 6.6 Consensus size: 32
24650072 TTTGTTGCGA
* *
24650082 TGCTACTGATGGCTTTGTGCCGGTCATAGT-AC
1 TGCTACTGATGGCTGTGTGCCGATCATA-TCAC
*** * * * *
24650114 CATTACTGATGGCTTTGTGTCAATCATATTAC
1 TGCTACTGATGGCTGTGTGCCGATCATATCAC
* * * * *
24650146 TGTTACCGATGGCTGTGTGCCGGTCATTTCAT
1 TGCTACTGATGGCTGTGTGCCGATCATATCAC
** * * *
24650178 TATTACTGATGGCAGTGTGCTGATCATATCAA
1 TGCTACTGATGGCTGTGTGCCGATCATATCAC
* * *
24650210 TGCTACTGATGGCTTTGTGCCGATCATGTTAC
1 TGCTACTGATGGCTGTGTGCCGATCATATCAC
*** *
24650242 CATTACTGATGCCTGTGTGCCGATCATATCAC
1 TGCTACTGATGGCTGTGTGCCGATCATATCAC
* *
24650274 TGCTATTGATGGCTTTGTGC
1 TGCTACTGATGGCTGTGTGC
24650294 TAATCACATT
Statistics
Matches: 135, Mismatches: 44, Indels: 2
0.75 0.24 0.01
Matches are distributed among these distances:
31 1 0.01
32 134 0.99
ACGTcount: A:0.19, C:0.21, G:0.24, T:0.37
Consensus pattern (32 bp):
TGCTACTGATGGCTGTGTGCCGATCATATCAC
Found at i:24650293 original size:96 final size:96
Alignment explanation
Indices: 24650082--24650299 Score: 233
Period size: 96 Copynumber: 2.3 Consensus size: 96
24650072 TTTGTTGCGA
* * * * *
24650082 TGCTACTGATGGCTTTGTGCCGGTCATAGTACCATTACTGATGGCTTTGTGTCAATCATATTACT
1 TGCTACTGATGGCTTTGTGCTGATCATAGTACAATTACTGATGGCTTTGTGCCAATCATATTACC
* * * * *
24650147 GTTACCGATGGCTGTGTGCCGGTCATTTCAT
66 ATTACCGATGCCTGTGTGCCGATCATATCAC
** ** * *
24650178 TATTACTGATGGCAGTGTGCTGATCATA-T-CAATGCTACTGATGGCTTTGTGCCGATCATGTTA
1 TGCTACTGATGGCTTTGTGCTGATCATAGTACAAT--TACTGATGGCTTTGTGCCAATCATATTA
*
24650241 CCATTACTGATGCCTGTGTGCCGATCATATCAC
64 CCATTACCGATGCCTGTGTGCCGATCATATCAC
* *
24650274 TGCTATTGATGGCTTTGTGCTAATCA
1 TGCTACTGATGGCTTTGTGCTGATCA
24650300 CATTACTGTA
Statistics
Matches: 97, Mismatches: 23, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
94 3 0.03
95 1 0.01
96 93 0.96
ACGTcount: A:0.20, C:0.21, G:0.23, T:0.37
Consensus pattern (96 bp):
TGCTACTGATGGCTTTGTGCTGATCATAGTACAATTACTGATGGCTTTGTGCCAATCATATTACC
ATTACCGATGCCTGTGTGCCGATCATATCAC
Found at i:24658106 original size:24 final size:23
Alignment explanation
Indices: 24658073--24658130 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
24658063 AGTTGAAAAG
24658073 TATAA-AATAAAATAAATAATGATA
1 TATAATAATAAAAT-AAT-ATGATA
*
24658097 -ATAATAATAAAATGATATGATA
1 TATAATAATAAAATAATATGATA
24658119 TATATATAATAA
1 TATA-ATAATAA
24658131 TGTTTGATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 6 0.20
23 9 0.30
24 15 0.50
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (23 bp):
TATAATAATAAAATAATATGATA
Found at i:24658483 original size:49 final size:48
Alignment explanation
Indices: 24658401--24658558 Score: 273
Period size: 49 Copynumber: 3.2 Consensus size: 48
24658391 CTTACTTTGA
*
24658401 GAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTTATATATGTGATAGGGCCTAATGGCCGATGTGAT
24658448 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGT-TATATATGTGATAGGGCCTAATGGCCGATGTGAT
24658497 GAATGTGAAAGTGTGTATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGT-TATATATGTGATAGGGCCTAATGGCCGATGTGAT
24658546 GAATGTGATAAGT
1 GAATGTGA-AAGT
24658559 CCCGAAGGGC
Statistics
Matches: 106, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
47 13 0.12
49 89 0.84
50 4 0.04
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (48 bp):
GAATGTGAAAGTGTTATATATGTGATAGGGCCTAATGGCCGATGTGAT
Found at i:24658732 original size:37 final size:37
Alignment explanation
Indices: 24658676--24658754 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
24658666 CCGAGCTCTA
* * *
24658676 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
24658713 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
24658750 AAGAC
1 AAGAC
24658755 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:24662779 original size:15 final size:16
Alignment explanation
Indices: 24662759--24662790 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
24662749 CTACTGTGTG
24662759 TTTTC-TTTACTTTTT
1 TTTTCTTTTACTTTTT
24662774 TTTTCTTTTACTTTTT
1 TTTTCTTTTACTTTTT
24662790 T
1 T
24662791 CTTGTTTTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.06, C:0.12, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTTCTTTTACTTTTT
Found at i:24662798 original size:16 final size:16
Alignment explanation
Indices: 24662764--24662798 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
24662754 GTGTGTTTTC
*
24662764 TTTACTTTTTTTTTCT
1 TTTACTTTTTTCTTCT
*
24662780 TTTACTTTTTTCTTGT
1 TTTACTTTTTTCTTCT
24662796 TTT
1 TTT
24662799 GCTTGAGGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.06, C:0.11, G:0.03, T:0.80
Consensus pattern (16 bp):
TTTACTTTTTTCTTCT
Found at i:24664361 original size:24 final size:24
Alignment explanation
Indices: 24664334--24664382 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
24664324 AAACATGCAA
*
24664334 CAGAGTATGTTGCCAAATGTGAGT
1 CAGAGTATGTTGCCAAATGTAAGT
24664358 CAGAGTATGTTGCCAAATGTAAGT
1 CAGAGTATGTTGCCAAATGTAAGT
24664382 C
1 C
24664383 CTGCCAGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.29
Consensus pattern (24 bp):
CAGAGTATGTTGCCAAATGTAAGT
Found at i:24665750 original size:16 final size:16
Alignment explanation
Indices: 24665729--24665762 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
24665719 AGACACGCGT
24665729 TTTTATTAAGTTTTAA
1 TTTTATTAAGTTTTAA
24665745 TTTTATTAAGTTTTAA
1 TTTTATTAAGTTTTAA
24665761 TT
1 TT
24665763 ATGTTTTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (16 bp):
TTTTATTAAGTTTTAA
Found at i:24665784 original size:21 final size:21
Alignment explanation
Indices: 24665745--24665784 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
24665735 TAAGTTTTAA
*
24665745 TTTTATTAAGTTTTAATTATG
1 TTTTATTAAGTTTCAATTATG
* *
24665766 TTTTCTTAAGTTTCCATTA
1 TTTTATTAAGTTTCAATTA
24665785 AGTTAATAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.25, C:0.07, G:0.07, T:0.60
Consensus pattern (21 bp):
TTTTATTAAGTTTCAATTATG
Found at i:24673267 original size:58 final size:59
Alignment explanation
Indices: 24673174--24673294 Score: 190
Period size: 58 Copynumber: 2.1 Consensus size: 59
24673164 AATATAAAAT
* *
24673174 TAATTATATTAAGAATGTTATTAAATTATATATTATTTTTATTAAAGTATATTTAATAA
1 TAATTATATTAAGAATATAATTAAATTATATATTATTTTTATTAAAGTATATTTAATAA
* * *
24673233 TAATTATATTCA-AATATAATTAAATTATTTATTATTTTTATTAAATTATATTTAATAA
1 TAATTATATTAAGAATATAATTAAATTATATATTATTTTTATTAAAGTATATTTAATAA
24673291 TAAT
1 TAAT
24673295 CCTATTAAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 46 0.81
59 11 0.19
ACGTcount: A:0.45, C:0.01, G:0.02, T:0.52
Consensus pattern (59 bp):
TAATTATATTAAGAATATAATTAAATTATATATTATTTTTATTAAAGTATATTTAATAA
Found at i:24673268 original size:26 final size:27
Alignment explanation
Indices: 24673197--24673268 Score: 71
Period size: 26 Copynumber: 2.7 Consensus size: 27
24673187 AATGTTATTA
24673197 AATTATATATTATTT-TTATTAAAGTAT
1 AATTA-ATATTATTTATTATTAAAGTAT
* * *
24673224 ATTTAATAATAATTA-TATTCAAA-TAT
1 AATTAATATTATTTATTATT-AAAGTAT
24673250 AATTAA-ATTATTTATTATT
1 AATTAATATTATTTATTATT
24673269 TTTATTAAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
25 6 0.17
26 23 0.64
27 7 0.19
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.53
Consensus pattern (27 bp):
AATTAATATTATTTATTATTAAAGTAT
Found at i:24676725 original size:29 final size:29
Alignment explanation
Indices: 24676638--24676725 Score: 124
Period size: 29 Copynumber: 3.0 Consensus size: 29
24676628 TCGTGGAAGA
* *
24676638 GGTGGAGAACTTGTTCGCTGAGAATTCGT
1 GGTGAAGAACTTGTTCGTTGAGAATTCGT
* *
24676667 AGTGAAGAACTTGTTC-TGTAAGAATTCGT
1 GGTGAAGAACTTGTTCGT-TGAGAATTCGT
24676696 GGTGAAGAACTTGTTCGTTGAGAATTCGT
1 GGTGAAGAACTTGTTCGTTGAGAATTCGT
24676725 G
1 G
24676726 TCAATGTGGA
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
29 50 0.98
30 1 0.02
ACGTcount: A:0.25, C:0.11, G:0.31, T:0.33
Consensus pattern (29 bp):
GGTGAAGAACTTGTTCGTTGAGAATTCGT
Found at i:24676873 original size:24 final size:24
Alignment explanation
Indices: 24676828--24676874 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
24676818 ATTTATTAAT
*
24676828 ATAATATATTTAGCATTTATTAGC
1 ATAATATATTTAGCATTAATTAGC
* *
24676852 ATAATATATTTGGTATTAATTAG
1 ATAATATATTTAGCATTAATTAG
24676875 AATTAAGTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.38, C:0.04, G:0.11, T:0.47
Consensus pattern (24 bp):
ATAATATATTTAGCATTAATTAGC
Found at i:24677332 original size:18 final size:18
Alignment explanation
Indices: 24677299--24677338 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
24677289 ATTAAAAATC
*
24677299 ATATTTTTTATATTTAAT
1 ATATTTTTTATATTTAAA
24677317 ATATTTTTTA-ATTTTAAA
1 ATATTTTTTATA-TTTAAA
24677335 ATAT
1 ATAT
24677339 ATAGTAACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 1 0.05
18 19 0.95
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
ATATTTTTTATATTTAAA
Found at i:24684906 original size:40 final size:40
Alignment explanation
Indices: 24684794--24684913 Score: 150
Period size: 40 Copynumber: 3.0 Consensus size: 40
24684784 CATGGGTCCG
* * *
24684794 ATATAAGTAAGACCATAGCTAAAAGATGCTATGGCATCAT
1 ATATGAGTAAGACCATAGCTGAAAGATGTTATGGCATCAT
* * *
24684834 AAATGAGTAAGACCATAGCTGTAATATGTTATGGCATCAT
1 ATATGAGTAAGACCATAGCTGAAAGATGTTATGGCATCAT
* ** *
24684874 ATATGAGTAAGACCTTAGCTGAAAGACATTATGACATCAT
1 ATATGAGTAAGACCATAGCTGAAAGATGTTATGGCATCAT
24684914 GATAGAAGAG
Statistics
Matches: 67, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 67 1.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (40 bp):
ATATGAGTAAGACCATAGCTGAAAGATGTTATGGCATCAT
Found at i:24686587 original size:26 final size:25
Alignment explanation
Indices: 24686538--24686592 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
24686528 AAACAAAACT
* * *
24686538 AAAATCTAACCTAAAAAGAAAAGAG
1 AAAACCTAAACTAAAAAGAAAAGAA
*
24686563 AAAACCTAAACTAAAAATGACAAGAA
1 AAAACCTAAACTAAAAA-GAAAAGAA
24686589 AAAA
1 AAAA
24686593 AAAGGAAAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.67, C:0.13, G:0.09, T:0.11
Consensus pattern (25 bp):
AAAACCTAAACTAAAAAGAAAAGAA
Found at i:24689609 original size:11 final size:11
Alignment explanation
Indices: 24689593--24689617 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
24689583 AAAAGCATTG
24689593 GAATATGCTAA
1 GAATATGCTAA
24689604 GAATATGCTAA
1 GAATATGCTAA
24689615 GAA
1 GAA
24689618 GTGTTGGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.08, G:0.20, T:0.24
Consensus pattern (11 bp):
GAATATGCTAA
Found at i:24690614 original size:32 final size:32
Alignment explanation
Indices: 24690578--24690638 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
24690568 GACCATAGCT
24690578 GAAAGATGCTATGGCATCATAAATGAGTAGGA
1 GAAAGATGCTATGGCATCATAAATGAGTAGGA
** *
24690610 GAAAGATTTTGTGGCATCATAAATGAGTA
1 GAAAGATGCTATGGCATCATAAATGAGTA
24690639 AAACCATAGC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.39, C:0.08, G:0.26, T:0.26
Consensus pattern (32 bp):
GAAAGATGCTATGGCATCATAAATGAGTAGGA
Found at i:24690694 original size:39 final size:40
Alignment explanation
Indices: 24690610--24690708 Score: 110
Period size: 39 Copynumber: 2.5 Consensus size: 40
24690600 ATGAGTAGGA
* * *
24690610 GAAAGATTTTGTGGCATCATAAATGAGTAAAACCATAGCT
1 GAAAGATCTTATGGCATCATAAACGAGTAAAACCATAGCT
* * * *
24690650 AAAAGATCTTATGGCATCAT-AACGAGTAAGAGCATAGTT
1 GAAAGATCTTATGGCATCATAAACGAGTAAAACCATAGCT
* *
24690689 GAAAGATGTTATGACATCAT
1 GAAAGATCTTATGGCATCAT
24690709 GATAGAAGTG
Statistics
Matches: 49, Mismatches: 10, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
39 32 0.65
40 17 0.35
ACGTcount: A:0.40, C:0.12, G:0.20, T:0.27
Consensus pattern (40 bp):
GAAAGATCTTATGGCATCATAAACGAGTAAAACCATAGCT
Found at i:24690923 original size:27 final size:27
Alignment explanation
Indices: 24690845--24690930 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 27
24690835 CTATTGGGAC
* * *
24690845 AATAAACACGAGATAGTTTATCGGGAT
1 AATAAAAACGGGATAGTTTATCAGGAT
*
24690872 AATAAAATA--GGATAGTCTATCAGGAT
1 AATAAAA-ACGGGATAGTTTATCAGGAT
* *
24690898 AATAAAAACGGGATAGTTTTTTAGGAT
1 AATAAAAACGGGATAGTTTATCAGGAT
*
24690925 AGTAAA
1 AATAAA
24690931 CAGGGGTAAT
Statistics
Matches: 48, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
25 1 0.02
26 21 0.44
27 25 0.52
28 1 0.02
ACGTcount: A:0.44, C:0.07, G:0.21, T:0.28
Consensus pattern (27 bp):
AATAAAAACGGGATAGTTTATCAGGAT
Found at i:24694616 original size:43 final size:43
Alignment explanation
Indices: 24694568--24694690 Score: 149
Period size: 43 Copynumber: 2.9 Consensus size: 43
24694558 TTGGCTTTGC
* * * *
24694568 GCCATATTTTTTAACAAATACTATGTATTGGTGTTGG-ATTTAT
1 GCCATATTATTTAGCAGATACTATGTACTGGTGTTGGCA-TTAT
* * *
24694611 GCCATAGTATTTAGCAGGTACTATGTACTGGTGTTGGCATTGT
1 GCCATATTATTTAGCAGATACTATGTACTGGTGTTGGCATTAT
* *
24694654 GCCATATTATTCAGCAGATACTATGTACTAGTGTTGG
1 GCCATATTATTTAGCAGATACTATGTACTGGTGTTGG
24694691 TTATTTTACC
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
43 67 0.99
44 1 0.01
ACGTcount: A:0.25, C:0.13, G:0.22, T:0.40
Consensus pattern (43 bp):
GCCATATTATTTAGCAGATACTATGTACTGGTGTTGGCATTAT
Found at i:24697197 original size:5 final size:5
Alignment explanation
Indices: 24697182--24697213 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
24697172 TTTTAATATT
24697182 TTAATA TTAAA TTAAA TTAAA TTAAA TTAAA T
1 TTAA-A TTAAA TTAAA TTAAA TTAAA TTAAA T
24697214 ATTTATCTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 22 0.85
6 4 0.15
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (5 bp):
TTAAA
Found at i:24697227 original size:39 final size:41
Alignment explanation
Indices: 24697182--24697277 Score: 121
Period size: 39 Copynumber: 2.4 Consensus size: 41
24697172 TTTTAATATT
24697182 TTAATATTAAATTAAATTAAATTAA-ATTAAA--TATTTATC
1 TTAATATTAAATTAAATTAAATTAATATTAAAGTTA-TTATC
** *
24697221 TTAATATT--ATTTTATTAATTTAATATTAAAGTTATTATC
1 TTAATATTAAATTAAATTAAATTAATATTAAAGTTATTATC
24697260 TTAATATTAAATTAAATT
1 TTAATATTAAATTAAATT
24697278 TAATGTTTAT
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
37 12 0.26
38 6 0.13
39 21 0.45
40 2 0.04
41 6 0.13
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.51
Consensus pattern (41 bp):
TTAATATTAAATTAAATTAAATTAATATTAAAGTTATTATC
Found at i:24697255 original size:25 final size:25
Alignment explanation
Indices: 24697182--24697275 Score: 68
Period size: 25 Copynumber: 3.6 Consensus size: 25
24697172 TTTTAATATT
*
24697182 TTAATATTAAATTAAA-TTAAATTAAA
1 TTAATATTAAATTAAAGTT--ATTATA
** *
24697208 TTAAATATTTATCTTAATA-TTATTTTA
1 TT-AATA-TTAAATTAA-AGTTATTATA
*
24697235 TTAAT-TTAATATTAAAGTTATTATC
1 TTAATATTAA-ATTAAAGTTATTATA
24697260 TTAATATTAAATTAAA
1 TTAATATTAAATTAAA
24697276 TTTAATGTTT
Statistics
Matches: 54, Mismatches: 8, Indels: 13
0.72 0.11 0.17
Matches are distributed among these distances:
24 4 0.07
25 21 0.39
26 9 0.17
27 10 0.19
28 7 0.13
29 3 0.06
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.50
Consensus pattern (25 bp):
TTAATATTAAATTAAAGTTATTATA
Found at i:24704905 original size:69 final size:69
Alignment explanation
Indices: 24704832--24704979 Score: 176
Period size: 69 Copynumber: 2.1 Consensus size: 69
24704822 AATTGAAAAA
* * * **
24704832 GAAAAAGAGAATG-GAAGAGAGCGAAAA-GAGATTGAGAGCGAAAAAGAATGTGAGCAAGAAAAG
1 GAAAAAGAGAATGAG-AGAAAAC-AAAACGAGATTGAAAAAGAAAAAGAATGTGAGCAAGAAAAG
*
24704895 -AAAGTT
64 CAAA-CT
* *
24704901 GAAAACGAGAGTGAGAGAAAACAAAACGAGATTGAAAAAGAAAAAGAATGTGAGCAAGAAAAGCA
1 GAAAAAGAGAATGAGAGAAAACAAAACGAGATTGAAAAAGAAAAAGAATGTGAGCAAGAAAAGCA
24704966 AACT
66 AACT
24704970 GAAAAAGAGA
1 GAAAAAGAGA
24704980 GCGAGAATGT
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
68 4 0.06
69 59 0.88
70 4 0.06
ACGTcount: A:0.57, C:0.06, G:0.28, T:0.09
Consensus pattern (69 bp):
GAAAAAGAGAATGAGAGAAAACAAAACGAGATTGAAAAAGAAAAAGAATGTGAGCAAGAAAAGCA
AACT
Found at i:24713617 original size:39 final size:39
Alignment explanation
Indices: 24713568--24713823 Score: 350
Period size: 39 Copynumber: 6.5 Consensus size: 39
24713558 TGTATTTATA
* * *
24713568 CCTGACTGCACATACGTGCCCTTTTTGTACTTCGGTACC
1 CCTGAATGCACATACGTGCCCCTGTTGTACTTCGGTACC
* *
24713607 CTTGAATGCACATACGTGCCCCTGTTGTACTTCGATACC
1 CCTGAATGCACATACGTGCCCCTGTTGTACTTCGGTACC
* * * *
24713646 CCTAAATGCACATACATGCCCCTGTTGTACTTCAGCACC
1 CCTGAATGCACATACGTGCCCCTGTTGTACTTCGGTACC
* *
24713685 CTTGAATGCACATACGTGCCTCTGTTGTACTTCGGTACC
1 CCTGAATGCACATACGTGCCCCTGTTGTACTTCGGTACC
*
24713724 CCTGAATGCACATACGTGCCCCTGTTGTACTTCAGTACC
1 CCTGAATGCACATACGTGCCCCTGTTGTACTTCGGTACC
* **
24713763 CCTGAATGCACATACGTGCTCCTGTTGTACTTCTATACC
1 CCTGAATGCACATACGTGCCCCTGTTGTACTTCGGTACC
* *
24713802 CCTGATTTGCACTTACGTGCCC
1 CCTGA-ATGCACATACGTGCCC
24713824 TTGATTATAT
Statistics
Matches: 190, Mismatches: 26, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
39 177 0.93
40 13 0.07
ACGTcount: A:0.20, C:0.32, G:0.17, T:0.31
Consensus pattern (39 bp):
CCTGAATGCACATACGTGCCCCTGTTGTACTTCGGTACC
Found at i:24713766 original size:19 final size:19
Alignment explanation
Indices: 24713706--24713766 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 19
24713696 ATACGTGCCT
*
24713706 CTGTTGTACTTCGGTACCC
1 CTGTTGTACTTCAGTACCC
* * * *
24713725 CTGAATGCACAT-ACGTGCCC
1 CTG-TTGTACTTCA-GTACCC
24713745 CTGTTGTACTTCAGTACCC
1 CTGTTGTACTTCAGTACCC
24713764 CTG
1 CTG
24713767 AATGCACATA
Statistics
Matches: 30, Mismatches: 9, Indels: 6
0.67 0.20 0.13
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.16, C:0.33, G:0.20, T:0.31
Consensus pattern (19 bp):
CTGTTGTACTTCAGTACCC
Found at i:24717395 original size:11 final size:11
Alignment explanation
Indices: 24717378--24717408 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
24717368 ATTAAAATTT
24717378 CTTAATAAAAC
1 CTTAATAAAAC
*
24717389 TTTAATAAAAC
1 CTTAATAAAAC
24717400 CTTAATAAA
1 CTTAATAAA
24717409 GCTCTGTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (11 bp):
CTTAATAAAAC
Found at i:24723554 original size:25 final size:25
Alignment explanation
Indices: 24723509--24723558 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
24723499 AGTTGTCGAG
*
24723509 AGAAAATTCTCTGAAGATATTATTTC
1 AGAAAATTCTCTAAAGATATT-TTTC
24723535 AGAAAATT-TCTAAAGATATTTTTC
1 AGAAAATTCTCTAAAGATATTTTTC
24723559 TGATTTATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.17
25 11 0.48
26 8 0.35
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (25 bp):
AGAAAATTCTCTAAAGATATTTTTC
Found at i:24728976 original size:10 final size:11
Alignment explanation
Indices: 24728951--24728976 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
24728941 ATTAAATAAT
24728951 AAAAAAGTTTC
1 AAAAAAGTTTC
24728962 AAAAAAGTTTC
1 AAAAAAGTTTC
24728973 AAAA
1 AAAA
24728977 CTAAAAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.62, C:0.08, G:0.08, T:0.23
Consensus pattern (11 bp):
AAAAAAGTTTC
Found at i:24729484 original size:18 final size:17
Alignment explanation
Indices: 24729451--24729485 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
24729441 AATGAATGGG
*
24729451 AAATAAGAAATAAAATA
1 AAATAAAAAATAAAATA
24729468 AAATAAAAAAGTAAAATA
1 AAATAAAAAA-TAAAATA
24729486 CCTGCCATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.17
Consensus pattern (17 bp):
AAATAAAAAATAAAATA
Found at i:24730640 original size:19 final size:18
Alignment explanation
Indices: 24730618--24730668 Score: 50
Period size: 19 Copynumber: 2.7 Consensus size: 18
24730608 AAAAATCTAA
* *
24730618 AAATATTATAAAAATTATT
1 AAATATT-TAAAAAGTATG
24730637 AAATTATTTAAAAAGTATG
1 AAA-TATTTAAAAAGTATG
24730656 AAA-ATTCTAAAAA
1 AAATATT-TAAAAA
24730669 AATATTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
17 3 0.11
18 6 0.21
19 15 0.54
20 4 0.14
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (18 bp):
AAATATTTAAAAAGTATG
Found at i:24731044 original size:24 final size:24
Alignment explanation
Indices: 24731017--24731074 Score: 98
Period size: 24 Copynumber: 2.4 Consensus size: 24
24731007 AGCTTCTTGA
24731017 TGGGCCCTATACTATGCTTCTAAG
1 TGGGCCCTATACTATGCTTCTAAG
* *
24731041 TGGGCCCTATGCTATGCTTCTAGG
1 TGGGCCCTATACTATGCTTCTAAG
24731065 TGGGCCCTAT
1 TGGGCCCTAT
24731075 CGTTGGCTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.16, C:0.26, G:0.26, T:0.33
Consensus pattern (24 bp):
TGGGCCCTATACTATGCTTCTAAG
Found at i:24731637 original size:24 final size:25
Alignment explanation
Indices: 24731592--24731654 Score: 58
Period size: 24 Copynumber: 2.5 Consensus size: 25
24731582 TCGTTTAATT
24731592 TTTTAATTAATTTTTAAATAATATCTTA
1 TTTTAATTAA-TTTT--ATAATATCTTA
* *
24731620 TTTTAATTAATTTT-TAATTTGTTA
1 TTTTAATTAATTTTATAATATCTTA
*
24731644 TTCTAA-TAATT
1 TTTTAATTAATT
24731655 AAATATAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
23 5 0.16
24 13 0.41
27 4 0.12
28 10 0.31
ACGTcount: A:0.35, C:0.03, G:0.02, T:0.60
Consensus pattern (25 bp):
TTTTAATTAATTTTATAATATCTTA
Found at i:24743732 original size:44 final size:44
Alignment explanation
Indices: 24743676--24743965 Score: 429
Period size: 44 Copynumber: 6.6 Consensus size: 44
24743666 TTGAAGTCAA
24743676 AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGCTGTCC
1 AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGCTGTCC
* * * * * *
24743720 AATTGTTCATTAAATTCTGTCCAAATGTTAATTTAATGTTGTCC
1 AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGCTGTCC
* * *
24743764 AATTGTTGATTAAATGATGTCCAAATATTGATTGAATGTTGTCT
1 AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGCTGTCC
* *
24743808 AATTGTTGATTAAATGCTGTCCAAATGTTGATTTAATGCTGTCC
1 AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGCTGTCC
* * *
24743852 AATTGTTGACTAAATGCTGTCCAAATATTGATTTAATGTTGTCC
1 AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGCTGTCC
*
24743896 AATTGTTGATTAAATGCTGTCCAAAT-GTGAATTGAATGCTGTCC
1 AATTGTTGATTAAATGCTGTCCAAATATTG-ATTGAATGCTGTCC
24743940 AATTGTTGATTAAATGCTGTCCAAAT
1 AATTGTTGATTAAATGCTGTCCAAAT
24743966 GATAATTATA
Statistics
Matches: 220, Mismatches: 25, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
43 2 0.01
44 218 0.99
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.41
Consensus pattern (44 bp):
AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGCTGTCC
Found at i:24743828 original size:88 final size:88
Alignment explanation
Indices: 24743676--24743965 Score: 481
Period size: 88 Copynumber: 3.3 Consensus size: 88
24743666 TTGAAGTCAA
* * *
24743676 AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGCTGTCCAATTGTTCATTAAATTCTGTC
1 AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGTTGTCCAATTGTTGATTAAATGCTGTC
*
24743741 CAAATGTTAATTTAATGTTGTCC
66 CAAATGTTAATTTAATGCTGTCC
* *
24743764 AATTGTTGATTAAATGATGTCCAAATATTGATTGAATGTTGTCTAATTGTTGATTAAATGCTGTC
1 AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGTTGTCCAATTGTTGATTAAATGCTGTC
*
24743829 CAAATGTTGATTTAATGCTGTCC
66 CAAATGTTAATTTAATGCTGTCC
* *
24743852 AATTGTTGACTAAATGCTGTCCAAATATTGATTTAATGTTGTCCAATTGTTGATTAAATGCTGTC
1 AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGTTGTCCAATTGTTGATTAAATGCTGTC
* *
24743917 CAAATGTGAATTGAATGCTGTCC
66 CAAATGTTAATTTAATGCTGTCC
24743940 AATTGTTGATTAAATGCTGTCCAAAT
1 AATTGTTGATTAAATGCTGTCCAAAT
24743966 GATAATTATA
Statistics
Matches: 187, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 187 1.00
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.41
Consensus pattern (88 bp):
AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGTTGTCCAATTGTTGATTAAATGCTGTC
CAAATGTTAATTTAATGCTGTCC
Found at i:24743979 original size:22 final size:22
Alignment explanation
Indices: 24743679--24743966 Score: 344
Period size: 22 Copynumber: 13.1 Consensus size: 22
24743669 AAGTCAAAAT
24743679 TGTTGATTAAATGCTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* * *
24743701 TATTGATTGAATGCTGTCCAAT
1 TGTTGATTAAATGCTGTCCAAA
* *
24743723 TGTTCATTAAATTCTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* * * *
24743745 TGTTAATTTAATGTTGTCCAAT
1 TGTTGATTAAATGCTGTCCAAA
*
24743767 TGTTGATTAAATGATGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* * * * *
24743789 TATTGATTGAATGTTGTCTAAT
1 TGTTGATTAAATGCTGTCCAAA
24743811 TGTTGATTAAATGCTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* *
24743833 TGTTGATTTAATGCTGTCCAAT
1 TGTTGATTAAATGCTGTCCAAA
*
24743855 TGTTGACTAAATGCTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* * * *
24743877 TATTGATTTAATGTTGTCCAAT
1 TGTTGATTAAATGCTGTCCAAA
24743899 TGTTGATTAAATGCTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* *
24743921 TG-TGAATTGAATGCTGTCCAAT
1 TGTTG-ATTAAATGCTGTCCAAA
24743943 TGTTGATTAAATGCTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
24743965 TG
1 TG
24743967 ATAATTATAT
Statistics
Matches: 219, Mismatches: 45, Indels: 4
0.82 0.17 0.01
Matches are distributed among these distances:
21 2 0.01
22 215 0.98
23 2 0.01
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.41
Consensus pattern (22 bp):
TGTTGATTAAATGCTGTCCAAA
Found at i:24750953 original size:22 final size:22
Alignment explanation
Indices: 24750919--24751275 Score: 428
Period size: 22 Copynumber: 16.2 Consensus size: 22
24750909 AAGTAAAAAT
24750919 TGTTGATTAAATGCTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* * * *
24750941 TATTGATTGAATGCTGTCTAAT
1 TGTTGATTAAATGCTGTCCAAA
24750963 TGTTGATTAAATGCTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* * *
24750985 TGTTGATTTAATGTTGTCCAAT
1 TGTTGATTAAATGCTGTCCAAA
*
24751007 TGTTGATTAAATGATGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* * * *
24751029 TATTGATTGAATGTTGTCCAAT
1 TGTTGATTAAATGCTGTCCAAA
24751051 TGTTGATTAAATGCTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* *
24751073 TGTTGATTTAATGCTGTCCAAT
1 TGTTGATTAAATGCTGTCCAAA
*
24751095 TGTTAATTAAATGCTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* * *
24751117 TATTGATTGAATTG-TGTCCAAT
1 TGTTGATT-AAATGCTGTCCAAA
24751139 TGTTGATTAAATGCTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* * *
24751161 TGTTGATTTAATGTTGTCCAAT
1 TGTTGATTAAATGCTGTCCAAA
*
24751183 TGTTGATTAAATGATGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* * * *
24751205 TGTTGATTGAAGGCTGTTCAAT
1 TGTTGATTAAATGCTGTCCAAA
*
24751227 TGTTGATTAAATGTTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* * *
24751249 TGTTAATTAAATGTTGTCTAAA
1 TGTTGATTAAATGCTGTCCAAA
24751271 TGTTG
1 TGTTG
24751276 GATAATTGCT
Statistics
Matches: 280, Mismatches: 53, Indels: 4
0.83 0.16 0.01
Matches are distributed among these distances:
21 4 0.01
22 272 0.97
23 4 0.01
ACGTcount: A:0.29, C:0.10, G:0.18, T:0.42
Consensus pattern (22 bp):
TGTTGATTAAATGCTGTCCAAA
Found at i:24750967 original size:44 final size:44
Alignment explanation
Indices: 24750916--24751275 Score: 524
Period size: 44 Copynumber: 8.2 Consensus size: 44
24750906 TTGAAGTAAA
* * *
24750916 AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGCTGTCT
1 AATTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGTTGTCC
*
24750960 AATTGTTGATTAAATGCTGTCCAAATGTTGATTTAATGTTGTCC
1 AATTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGTTGTCC
* *
24751004 AATTGTTGATTAAATGATGTCCAAATATTGATTGAATGTTGTCC
1 AATTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGTTGTCC
* *
24751048 AATTGTTGATTAAATGCTGTCCAAATGTTGATTTAATGCTGTCC
1 AATTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGTTGTCC
* *
24751092 AATTGTTAATTAAATGCTGTCCAAATATTGATTGAAT-TGTGTCC
1 AATTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGT-TGTCC
*
24751136 AATTGTTGATTAAATGCTGTCCAAATGTTGATTTAATGTTGTCC
1 AATTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGTTGTCC
* * * *
24751180 AATTGTTGATTAAATGATGTCCAAATGTTGATTGAAGGCTGTTC
1 AATTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGTTGTCC
* * * *
24751224 AATTGTTGATTAAATGTTGTCCAAATGTTAATTAAATGTTGTCT
1 AATTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGTTGTCC
*
24751268 AAATGTTG
1 AATTGTTG
24751276 GATAATTGCT
Statistics
Matches: 283, Mismatches: 31, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
44 282 1.00
45 1 0.00
ACGTcount: A:0.30, C:0.10, G:0.18, T:0.42
Consensus pattern (44 bp):
AATTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGTTGTCC
Found at i:24751065 original size:88 final size:88
Alignment explanation
Indices: 24750916--24751275 Score: 578
Period size: 88 Copynumber: 4.1 Consensus size: 88
24750906 TTGAAGTAAA
* *
24750916 AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGCTGTCTAATTGTTGATTAAATGCTGTC
1 AATTGTTGATTAAATGATGTCCAAATATTGATTGAATGCTGTCCAATTGTTGATTAAATGCTGTC
24750981 CAAATGTTGATTTAATGTTGTCC
66 CAAATGTTGATTTAATGTTGTCC
*
24751004 AATTGTTGATTAAATGATGTCCAAATATTGATTGAATGTTGTCCAATTGTTGATTAAATGCTGTC
1 AATTGTTGATTAAATGATGTCCAAATATTGATTGAATGCTGTCCAATTGTTGATTAAATGCTGTC
*
24751069 CAAATGTTGATTTAATGCTGTCC
66 CAAATGTTGATTTAATGTTGTCC
* *
24751092 AATTGTTAATTAAATGCTGTCCAAATATTGATTGAATTG-TGTCCAATTGTTGATTAAATGCTGT
1 AATTGTTGATTAAATGATGTCCAAATATTGATTGAA-TGCTGTCCAATTGTTGATTAAATGCTGT
24751156 CCAAATGTTGATTTAATGTTGTCC
65 CCAAATGTTGATTTAATGTTGTCC
* * * *
24751180 AATTGTTGATTAAATGATGTCCAAATGTTGATTGAAGGCTGTTCAATTGTTGATTAAATGTTGTC
1 AATTGTTGATTAAATGATGTCCAAATATTGATTGAATGCTGTCCAATTGTTGATTAAATGCTGTC
* * *
24751245 CAAATGTTAATTAAATGTTGTCT
66 CAAATGTTGATTTAATGTTGTCC
*
24751268 AAATGTTG
1 AATTGTTG
24751276 GATAATTGCT
Statistics
Matches: 253, Mismatches: 17, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
87 1 0.00
88 250 0.99
89 2 0.01
ACGTcount: A:0.30, C:0.10, G:0.18, T:0.42
Consensus pattern (88 bp):
AATTGTTGATTAAATGATGTCCAAATATTGATTGAATGCTGTCCAATTGTTGATTAAATGCTGTC
CAAATGTTGATTTAATGTTGTCC
Found at i:24751249 original size:11 final size:11
Alignment explanation
Indices: 24751234--24751275 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
24751224 AATTGTTGAT
24751234 TAAATGTTGTC
1 TAAATGTTGTC
* *
24751245 CAAATGTTAAT-
1 TAAATGTT-GTC
24751256 TAAATGTTGTC
1 TAAATGTTGTC
24751267 TAAATGTTG
1 TAAATGTTG
24751276 GATAATTGCT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
10 1 0.04
11 23 0.92
12 1 0.04
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.43
Consensus pattern (11 bp):
TAAATGTTGTC
Found at i:24762669 original size:20 final size:20
Alignment explanation
Indices: 24762626--24762688 Score: 72
Period size: 20 Copynumber: 3.1 Consensus size: 20
24762616 ATGAGATTTA
* * *
24762626 CACTTCGGTGCCCCTATATA
1 CACTTCGGTGCCCCTGTTTG
*
24762646 CACTTCGGTGTCCCTGTTTG
1 CACTTCGGTGCCCCTGTTTG
* *
24762666 CACTACAGTGCCCCTGTTTG
1 CACTTCGGTGCCCCTGTTTG
24762686 CAC
1 CAC
24762689 ATTTCTGTCC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.14, C:0.35, G:0.19, T:0.32
Consensus pattern (20 bp):
CACTTCGGTGCCCCTGTTTG
Found at i:24763769 original size:24 final size:24
Alignment explanation
Indices: 24763742--24763788 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
24763732 TAGGCTGTTG
24763742 AAATGACATATTTATGCATGTTTT
1 AAATGACATATTTATGCATGTTTT
*
24763766 AAATGGCATATTTATGCATGTTT
1 AAATGACATATTTATGCATGTTT
24763789 GAATGATGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.32, C:0.09, G:0.15, T:0.45
Consensus pattern (24 bp):
AAATGACATATTTATGCATGTTTT
Found at i:24767849 original size:22 final size:22
Alignment explanation
Indices: 24767808--24767849 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
24767798 CCACTACAGA
* *
24767808 CCATAATGAGTTTTGTAGAACT
1 CCATAATGAGTTTCGCAGAACT
24767830 CCATAATGAGTTTCGCAGAA
1 CCATAATGAGTTTCGCAGAA
24767850 TTCGTTCATC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (22 bp):
CCATAATGAGTTTCGCAGAACT
Found at i:24772235 original size:11 final size:11
Alignment explanation
Indices: 24772215--24772258 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
24772205 AGATAAATGT
*
24772215 TATTTAATTAA
1 TATTTTATTAA
24772226 TATTTTATTAA
1 TATTTTATTAA
* *
24772237 TACTTTTAGTAT
1 TA-TTTTATTAA
24772249 TATTTTATTA
1 TATTTTATTA
24772259 TTAAATGATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
11 19 0.68
12 9 0.32
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:24784918 original size:14 final size:14
Alignment explanation
Indices: 24784899--24784926 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
24784889 TAAAGTTATA
24784899 TTTAATAATTCATT
1 TTTAATAATTCATT
24784913 TTTAATAATTCATT
1 TTTAATAATTCATT
24784927 AATAAATTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (14 bp):
TTTAATAATTCATT
Found at i:24792339 original size:37 final size:37
Alignment explanation
Indices: 24792289--24792367 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
24792279 TTATTACGAA
* * *
24792289 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
24792326 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
24792363 GTCTT
1 GTCTT
24792368 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:24792657 original size:49 final size:47
Alignment explanation
Indices: 24792487--24792908 Score: 684
Period size: 47 Copynumber: 8.9 Consensus size: 47
24792477 CTTCGGGACT
* * * * * * * *
24792487 TCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
24792534 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
24792581 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
24792628 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTA
1 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
24792677 TCACATATATATACACTTTCACATTCATC-CAATCGGCCATTAGGCCCTA
1 TCAC--ATATATACACTTTCACATTCATCAC-ATCGGCCATTAGGCCTTA
24792726 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
24792775 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
24792822 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
24792869 TCACATATATACACTTTCACATTCATCACATCGGCCATTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTA
24792909 CGCCATACTA
Statistics
Matches: 361, Mismatches: 10, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
47 220 0.61
48 1 0.00
49 139 0.39
50 1 0.00
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
Found at i:24797195 original size:42 final size:43
Alignment explanation
Indices: 24797057--24797207 Score: 153
Period size: 43 Copynumber: 3.5 Consensus size: 43
24797047 AAAAAACTAG
* * **
24797057 TAAAGGTCATGTTTTATAGC-GACAATTTTAGTAAAAGCGTTGC
1 TAAAGGTCATGTTCTATAGCAG-CATTTTTAGTAAAAGCGCCGC
* * * * * * *
24797100 TAAAGGTCATGTTCTTTAGCGGCATTTTTGGGAAAAGTGCGGT
1 TAAAGGTCATGTTCTATAGCAGCATTTTTAGTAAAAGCGCCGC
* *
24797143 TAAAAGTCATGTTCTATAGCAGCTTTTTTAGTAAAAG-GCCGC
1 TAAAGGTCATGTTCTATAGCAGCATTTTTAGTAAAAGCGCCGC
*
24797185 TAAAGGTCATGTTCTTTAGCAGC
1 TAAAGGTCATGTTCTATAGCAGC
24797208 GTTTGTGGGA
Statistics
Matches: 88, Mismatches: 19, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
42 24 0.27
43 63 0.72
44 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.34
Consensus pattern (43 bp):
TAAAGGTCATGTTCTATAGCAGCATTTTTAGTAAAAGCGCCGC
Found at i:24797614 original size:66 final size:65
Alignment explanation
Indices: 24797497--24797630 Score: 153
Period size: 66 Copynumber: 2.0 Consensus size: 65
24797487 ATTCTGAAGC
* ** * * * *
24797497 TGTAGCTGGAGTTTGTCATATTTTCTACTTGCCTCTGCTTCCCTCGCTGCTGCTTGCACTTTAAG
1 TGTAGCTGGAATTCATCATATTTTCTA-TTGCCTCTACTTCCCTCGATGCTGCCTACACTTTAAG
24797562 T
65 T
* *
24797563 TGTAGCTGGAATTCATCATATTTTCT-TTGAGCCTCTACTTCTCTCGATGCTGCCTACCCTTTAA
1 TGTAGCTGGAATTCATCATATTTTCTATT--GCCTCTACTTCCCTCGATGCTGCCTACACTTTAA
24797627 GT
64 GT
24797629 TG
1 TG
24797631 AGAAATTTTC
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
64 2 0.04
66 55 0.96
ACGTcount: A:0.15, C:0.25, G:0.18, T:0.42
Consensus pattern (65 bp):
TGTAGCTGGAATTCATCATATTTTCTATTGCCTCTACTTCCCTCGATGCTGCCTACACTTTAAGT
Found at i:24814144 original size:39 final size:40
Alignment explanation
Indices: 24814026--24814210 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
24814016 GCTACTCGTT
* *
24814026 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * *
24814066 CAATTGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
24814106 CAAATGTCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
24814145 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
24814186 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
24814211 CATCATTCAA
Statistics
Matches: 120, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.26
40 74 0.62
41 13 0.11
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:24826303 original size:12 final size:12
Alignment explanation
Indices: 24826286--24826310 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
24826276 CAAAGTCATC
24826286 TTTCCCATTCCT
1 TTTCCCATTCCT
24826298 TTTCCCATTCCT
1 TTTCCCATTCCT
24826310 T
1 T
24826311 GAAAAATACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.40, G:0.00, T:0.52
Consensus pattern (12 bp):
TTTCCCATTCCT
Found at i:24834324 original size:37 final size:37
Alignment explanation
Indices: 24834274--24834352 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
24834264 TTATTACGAA
* * *
24834274 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCAG
*
24834311 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCAG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCAG
24834348 GTCTT
1 GTCTT
24834353 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCAG
Found at i:24834540 original size:47 final size:47
Alignment explanation
Indices: 24834471--24834630 Score: 311
Period size: 47 Copynumber: 3.4 Consensus size: 47
24834461 CCCTTCGGGA
24834471 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24834518 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24834565 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24834612 CTTATCACATATATACACT
1 CTTATCACATATATACACT
24834631 GTCTTGGCTG
Statistics
Matches: 111, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 111 1.00
ACGTcount: A:0.31, C:0.30, G:0.07, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24843866 original size:50 final size:51
Alignment explanation
Indices: 24843763--24843955 Score: 228
Period size: 50 Copynumber: 3.7 Consensus size: 51
24843753 GAGGAGGAGA
*
24843763 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C-CTGAG---ATGAGAGG
* *
24843819 TCCCATGTAAGACTATGTCTGGGACATGGCGTTGGCA-CTGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTGAGATGAGAGG
* * * * **
24843869 TCCCCTGTAAGACCACGTCTGGGACATGGCATGGGCACCT-ATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTGAGATGAGAGG
* *
24843919 TCCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
24843956 GTACAAGAAA
Statistics
Matches: 120, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
50 79 0.66
51 2 0.02
53 4 0.03
56 35 0.29
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.24
Consensus pattern (51 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTGAGATGAGAGG
Found at i:24846876 original size:27 final size:27
Alignment explanation
Indices: 24846838--24847054 Score: 238
Period size: 27 Copynumber: 8.0 Consensus size: 27
24846828 TTACACTATT
*
24846838 ATGACCGAAATACCCCCATAGGGTAGA
1 ATGACCGAAATACCCCCATAGGGTAAA
* **
24846865 ATGACTGAAATA-CCTTATAGGGTAAA
1 ATGACCGAAATACCCCCATAGGGTAAA
*
24846891 ATGACCAAAATACCCCCATAGGGTAAA
1 ATGACCGAAATACCCCCATAGGGTAAA
* * *
24846918 ATGACCCAAAAACCCCCCATTGGGTAAA
1 ATGACCGAAATA-CCCCCATAGGGTAAA
* *
24846946 ATGACCGAAATACCCACATAGGGTAGA
1 ATGACCGAAATACCCCCATAGGGTAAA
* * * * *
24846973 ATAACTGAAATATCCCTATAGGGTAGA
1 ATGACCGAAATACCCCCATAGGGTAAA
* * *
24847000 ATGATCAAAATACCCCCATAGGGTAGA
1 ATGACCGAAATACCCCCATAGGGTAAA
* *
24847027 ATCACCGAAATACCCTCATAGGGTAAA
1 ATGACCGAAATACCCCCATAGGGTAAA
24847054 A
1 A
24847055 CGACTGTTAT
Statistics
Matches: 156, Mismatches: 32, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
26 21 0.13
27 111 0.71
28 24 0.15
ACGTcount: A:0.41, C:0.23, G:0.18, T:0.18
Consensus pattern (27 bp):
ATGACCGAAATACCCCCATAGGGTAAA
Found at i:24847013 original size:54 final size:53
Alignment explanation
Indices: 24846838--24847054 Score: 263
Period size: 54 Copynumber: 4.0 Consensus size: 53
24846828 TTACACTATT
* * *
24846838 ATGACCGAAATACCCCCATAGGGTAGAATGACTGAAATACCTTATAGGGTAAA
1 ATGACCAAAATACCCCCATAGGGTAGAATGACCGAAATACCCTATAGGGTAAA
* * * * *
24846891 ATGACCAAAATACCCCCATAGGGTAAAATGACCCAAAAACCCCCCATTGGGTAAA
1 ATGACCAAAATACCCCCATAGGGTAGAATGACCGAAATA--CCCTATAGGGTAAA
* * * * *
24846946 ATGACCGAAATACCCACATAGGGTAGAATAACTGAAATATCCCTATAGGGTAGA
1 ATGACCAAAATACCCCCATAGGGTAGAATGACCGAAATA-CCCTATAGGGTAAA
* *
24847000 ATGATCAAAATACCCCCATAGGGTAGAATCACCGAAATACCCTCATAGGGTAAA
1 ATGACCAAAATACCCCCATAGGGTAGAATGACCGAAATACCCT-ATAGGGTAAA
24847054 A
1 A
24847055 CGACTGTTAT
Statistics
Matches: 136, Mismatches: 25, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
53 38 0.28
54 55 0.40
55 43 0.32
ACGTcount: A:0.41, C:0.23, G:0.18, T:0.18
Consensus pattern (53 bp):
ATGACCAAAATACCCCCATAGGGTAGAATGACCGAAATACCCTATAGGGTAAA
Found at i:24847071 original size:81 final size:82
Alignment explanation
Indices: 24846845--24847071 Score: 271
Period size: 81 Copynumber: 2.8 Consensus size: 82
24846835 ATTATGACCG
* * ** *
24846845 AAATACCCCCATAGGGTAGAATGACTGAAATA-CCTTATAGGGTAAAATGACCAAAATACCCCCA
1 AAATACCCCCATAGGGTAGAATGACCGAAATACCCTCATAGGGTAAAATGACTGAAATACCCCTA
24846909 TAGGGTAAAATGACCCA
66 TAGGGTAAAATGACCCA
* * * * * *
24846926 AAA-ACCCCCCATTGGGTAAAATGACCGAAATACCCACATAGGGTAGAATAACTGAAATATCCCT
1 AAATA-CCCCCATAGGGTAGAATGACCGAAATACCCTCATAGGGTAAAATGACTGAAATACCCCT
* *
24846990 ATAGGGTAGAATGA-TCA
65 ATAGGGTAAAATGACCCA
* * **
24847007 AAATACCCCCATAGGGTAGAATCACCGAAATACCCTCATAGGGTAAAACGACTGTTATACCCCTA
1 AAATACCCCCATAGGGTAGAATGACCGAAATACCCTCATAGGGTAAAATGACTGAAATACCCCTA
24847072 GGAGATGAAA
Statistics
Matches: 120, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
80 1 0.01
81 82 0.68
82 37 0.31
ACGTcount: A:0.40, C:0.23, G:0.17, T:0.19
Consensus pattern (82 bp):
AAATACCCCCATAGGGTAGAATGACCGAAATACCCTCATAGGGTAAAATGACTGAAATACCCCTA
TAGGGTAAAATGACCCA
Found at i:24859428 original size:26 final size:26
Alignment explanation
Indices: 24859398--24859450 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24859388 CACCAATATC
* * *
24859398 GTAGCATAGCTGGCAGTAGTAATAAT
1 GTAGCAAAGCTGCCAGTAGTAAGAAT
*
24859424 GTAGCAAAGGTGCCAGTAGTAAGAAT
1 GTAGCAAAGCTGCCAGTAGTAAGAAT
24859450 G
1 G
24859451 GCTAAGAGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.36, C:0.11, G:0.30, T:0.23
Consensus pattern (26 bp):
GTAGCAAAGCTGCCAGTAGTAAGAAT
Found at i:24859603 original size:32 final size:32
Alignment explanation
Indices: 24859562--24859730 Score: 198
Period size: 32 Copynumber: 5.3 Consensus size: 32
24859552 TGGCACACAA
*
24859562 CCATCAGTAACGGTAACATGAACGACATAAAG
1 CCATCAGTAACGGTAACATGATCGACATAAAG
* *
24859594 CCATCAGTAACGATAACATGATCGGCATAAAG
1 CCATCAGTAACGGTAACATGATCGACATAAAG
* * * *
24859626 CCATCAGTAACAGTGAA-ATGATCGGCACATAG
1 CCATCAGTAACGGT-AACATGATCGACATAAAG
* * * *
24859658 CCATCGGTAACGGTAATATGATTGACACAAAG
1 CCATCAGTAACGGTAACATGATCGACATAAAG
*
24859690 CCATCAGTAACAGT-ACTATGATCGACATAAAG
1 CCATCAGTAACGGTAAC-ATGATCGACATAAAG
24859722 CCATCAGTA
1 CCATCAGTA
24859731 CTATAAACAG
Statistics
Matches: 117, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
31 3 0.03
32 112 0.96
33 2 0.02
ACGTcount: A:0.40, C:0.22, G:0.19, T:0.20
Consensus pattern (32 bp):
CCATCAGTAACGGTAACATGATCGACATAAAG
Found at i:24859660 original size:64 final size:63
Alignment explanation
Indices: 24859516--24860015 Score: 324
Period size: 64 Copynumber: 7.9 Consensus size: 63
24859506 TACAATAATG
* * * * *
24859516 TGATTGGCACAAAGCCATTAGTAGC-AGTGATATGA-CTGGCACACAA-CCATCAGTAACGGTAA
1 TGATCGGCACAAAGCCATCAGTAACGA-TAATATGATC-GGCACA-AAGCCATCAGTAACAGTAA
24859578 CA
63 -A
* * * * *
24859580 TGAACGACATAAAGCCATCAGTAACGATAACATGATCGGCATAAAGCCATCAGTAACAGTGAAA
1 TGATCGGCACAAAGCCATCAGTAACGATAATATGATCGGCACAAAGCCATCAGTAACAGT-AAA
* * * * * *
24859644 TGATCGGCACATAGCCATCGGTAACGGTAATATGATTGACACAAAGCCATCAGTAACAGTACTA
1 TGATCGGCACAAAGCCATCAGTAACGATAATATGATCGGCACAAAGCCATCAGTAACAGTA-AA
* * * * * *
24859708 TGATCGACATAAAGCCATCAGT-ACTATAA-ACAGAAT-GGCTAC-AA-CCATAAGT-ACAATAA
1 TGATCGGCACAAAGCCATCAGTAACGATAATA-TG-ATCGGC-ACAAAGCCATCAGTAACAGTAA
*
24859767 TG
63 -A
* * * * *
24859769 TGATTGGCACAAAGCCATCAGTAGC-AGTGATATGACCGGCACACAA-CCATCAGTAACGGTAAC
1 TGATCGGCACAAAGCCATCAGTAACGA-TAATATGATCGGCACA-AAGCCATCAGTAACAGTAA-
24859832 A
63 A
* * * * * * * * *
24859833 TGATCGGTAAAAAGCCATCAGTAGC-AGTGATATGATTGGTACACAGTCATCATTAACAGTGAAA
1 TGATCGGCACAAAGCCATCAGTAACGA-TAATATGATCGGCACAAAGCCATCAGTAACAGT-AAA
* * * * * *
24859897 TGATCGGCACACAA-CCATCGGTAATGGTAATATGATCGGTACAAAACCATCAGTAACAGTACTA
1 TGATCGGCACA-AAGCCATCAGTAACGATAATATGATCGGCACAAAGCCATCAGTAACAGTA-AA
* * * * *
24859961 TGATTGGCATAAAGCCATCAGTAACGGTACTATGACCGGCACAAAGCCATCAGTA
1 TGATCGGCACAAAGCCATCAGTAACGATAATATGATCGGCACAAAGCCATCAGTA
24860016 GCATCGCAGT
Statistics
Matches: 338, Mismatches: 76, Indels: 44
0.74 0.17 0.10
Matches are distributed among these distances:
61 28 0.08
62 15 0.04
63 27 0.08
64 260 0.77
65 8 0.02
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.21
Consensus pattern (63 bp):
TGATCGGCACAAAGCCATCAGTAACGATAATATGATCGGCACAAAGCCATCAGTAACAGTAAA
Found at i:24859690 original size:96 final size:96
Alignment explanation
Indices: 24859516--24859730 Score: 265
Period size: 96 Copynumber: 2.2 Consensus size: 96
24859506 TACAATAATG
* * * * *
24859516 TGATTGGCACAAAGCCATTAGTAGCAGTGATATGACTGGCACACAACCATCAGTAACGGTAACAT
1 TGATCGGCATAAAGCCATCAGTAACAGTGAAATGACTGGCACACAACCATCAGTAACGGTAACAT
*
24859581 GAACGACATAAAGCCATCAGTAAC-GATAAC-A
66 GAACGACACAAAGCCATCAGTAACAG-T-ACTA
* * * *
24859612 TGATCGGCATAAAGCCATCAGTAACAGTGAAATGA-TCGGCACATAGCCATCGGTAACGGTAATA
1 TGATCGGCATAAAGCCATCAGTAACAGTGAAATGACT-GGCACACAACCATCAGTAACGGTAACA
**
24859676 TGATTGACACAAAGCCATCAGTAACAGTACTA
65 TGAACGACACAAAGCCATCAGTAACAGTACTA
*
24859708 TGATCGACATAAAGCCATCAGTA
1 TGATCGGCATAAAGCCATCAGTA
24859731 CTATAAACAG
Statistics
Matches: 103, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
95 3 0.03
96 99 0.96
97 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.20, T:0.20
Consensus pattern (96 bp):
TGATCGGCATAAAGCCATCAGTAACAGTGAAATGACTGGCACACAACCATCAGTAACGGTAACAT
GAACGACACAAAGCCATCAGTAACAGTACTA
Found at i:24859819 original size:32 final size:32
Alignment explanation
Indices: 24859769--24860015 Score: 205
Period size: 32 Copynumber: 7.7 Consensus size: 32
24859759 TACAATAATG
* *
24859769 TGATTGGCACAAAGCCATCAGTAGCAGTGATA
1 TGATCGGCACAAAGCCATCAGTAACAGTGATA
* * * *
24859801 TGACCGGCACACAA-CCATCAGTAACGGTAACA
1 TGATCGGCACA-AAGCCATCAGTAACAGTGATA
* * *
24859833 TGATCGGTAAAAAGCCATCAGTAGCAGTGATA
1 TGATCGGCACAAAGCCATCAGTAACAGTGATA
* * * * * *
24859865 TGATTGGTACACAGTCATCATTAACAGTGAAA
1 TGATCGGCACAAAGCCATCAGTAACAGTGATA
* ** *
24859897 TGATCGGCACACAA-CCATCGGTAATGGTAATA
1 TGATCGGCACA-AAGCCATCAGTAACAGTGATA
* *
24859929 TGATCGGTACAAAACCATCAGTAACAGT-ACTA
1 TGATCGGCACAAAGCCATCAGTAACAGTGA-TA
* * *
24859961 TGATTGGCATAAAGCCATCAGTAACGGT-ACTA
1 TGATCGGCACAAAGCCATCAGTAACAGTGA-TA
*
24859993 TGACCGGCACAAAGCCATCAGTA
1 TGATCGGCACAAAGCCATCAGTA
24860016 GCATCGCAGT
Statistics
Matches: 168, Mismatches: 42, Indels: 10
0.76 0.19 0.05
Matches are distributed among these distances:
31 5 0.03
32 160 0.95
33 3 0.02
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (32 bp):
TGATCGGCACAAAGCCATCAGTAACAGTGATA
Found at i:24859894 original size:96 final size:96
Alignment explanation
Indices: 24859590--24860015 Score: 333
Period size: 96 Copynumber: 4.5 Consensus size: 96
24859580 TGAACGACAT
* * * * * *
24859590 AAAGCCATCAGTAAC-GATAACATGATCGGCATA-AAGCCATCAGTAACAGTGAA-ATGATCGGC
1 AAAGCCATCAGTAACAG-TGATATGACCGGCACACAA-CCATCAGTAACGGT-AACATGATCGGT
* * * * * *
24859652 ACATAGCCATCGGTAACGGTAATATGATTGACAC
63 ACAAAACCATCAGTAACAGTACTATGATTGGCAC
* * * **
24859686 AAAGCCATCAGTAACAGT-ACTATGATCGACATA-AAGCCATCAGT-ACTATAAACA-GAAT-GG
1 AAAGCCATCAGTAACAGTGA-TATGACCGGCACACAA-CCATCAGTAACGGT-AACATG-ATCGG
* * * *
24859746 CTAC--AACCATAAGT-ACAATAATGTGATTGGCAC
62 -TACAAAACCATCAGTAACAGTACTATGATTGGCAC
*
24859779 AAAGCCATCAGTAGCAGTGATATGACCGGCACACAACCATCAGTAACGGTAACATGATCGGTA-A
1 AAAGCCATCAGTAACAGTGATATGACCGGCACACAACCATCAGTAACGGTAACATGATCGGTACA
* *
24859843 AAAGCCATCAGTAGCAGTGA-TATGATTGGTAC
66 AAA-CCATCAGTAACAGT-ACTATGATTGGCAC
* * * * * * * *
24859875 ACAGTCATCATTAACAGTGAAATGATCGGCACACAACCATCGGTAATGGTAATATGATCGGTACA
1 AAAGCCATCAGTAACAGTGATATGACCGGCACACAACCATCAGTAACGGTAACATGATCGGTACA
*
24859940 AAACCATCAGTAACAGTACTATGATTGGCAT
66 AAACCATCAGTAACAGTACTATGATTGGCAC
*
24859971 AAAGCCATCAGTAACGGT-ACTATGACCGGCACA-AAGCCATCAGTA
1 AAAGCCATCAGTAACAGTGA-TATGACCGGCACACAA-CCATCAGTA
24860016 GCATCGCAGT
Statistics
Matches: 268, Mismatches: 43, Indels: 38
0.77 0.12 0.11
Matches are distributed among these distances:
93 58 0.22
94 18 0.07
95 20 0.07
96 166 0.62
97 6 0.02
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.21
Consensus pattern (96 bp):
AAAGCCATCAGTAACAGTGATATGACCGGCACACAACCATCAGTAACGGTAACATGATCGGTACA
AAACCATCAGTAACAGTACTATGATTGGCAC
Found at i:24859949 original size:253 final size:254
Alignment explanation
Indices: 24859493--24859983 Score: 743
Period size: 253 Copynumber: 1.9 Consensus size: 254
24859483 ATAAACAGGT
* *
24859493 TACAAGCCATAAGTACAATAATGTGATTGGCACAAAGCCATTAGTAGCAGTGATATGACTGGCAC
1 TACAAGCCATAAGTACAATAATGTGATTGGCACAAAGCCATCAGTAGCAGTGATATGACCGGCAC
* *
24859558 ACAACCATCAGTAACGGTAACATGAACGACATAAAGCCATCAGTAACGATAACATGATCGGCATA
66 ACAACCATCAGTAACGGTAACATGAACGACAAAAAGCCATCAGTAACGATAACATGATCGGCACA
* * *
24859623 AAGCCATCAGTAACAGTGAAATGATCGGCACATAGCCATCGGTAACGGTAATATGATTGACACAA
131 AAGCCATCAGTAACAGTGAAATGATCGGCACACAACCATCGGTAACGGTAATATGATCGACACAA
*
24859688 AGCCATCAGTAACAGTACTATGATCGACATAAAGCCATCAGTACTATAAACAGAATGGC
196 AACCATCAGTAACAGTACTATGATCGACATAAAGCCATCAGTACTATAAACAGAATGGC
24859747 TACAA-CCATAAGTACAATAATGTGATTGGCACAAAGCCATCAGTAGCAGTGATATGACCGGCAC
1 TACAAGCCATAAGTACAATAATGTGATTGGCACAAAGCCATCAGTAGCAGTGATATGACCGGCAC
* ** * * * * *
24859811 ACAACCATCAGTAACGGTAACATGATCGGTAAAAAGCCATCAGTAGC-AGTGATATGATTGGTAC
66 ACAACCATCAGTAACGGTAACATGAACGACAAAAAGCCATCAGTAACGA-TAACATGATCGGCAC
* * * * **
24859875 ACAGTCATCATTAACAGTGAAATGATCGGCACACAACCATCGGTAATGGTAATATGATCGGTACA
130 AAAGCCATCAGTAACAGTGAAATGATCGGCACACAACCATCGGTAACGGTAATATGATCGACACA
* *
24859940 AAACCATCAGTAACAGTACTATGATTGGCATAAAGCCATCAGTA
195 AAACCATCAGTAACAGTACTATGATCGACATAAAGCCATCAGTA
24859984 ACGGTACTAT
Statistics
Matches: 212, Mismatches: 24, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
252 1 0.00
253 206 0.97
254 5 0.02
ACGTcount: A:0.39, C:0.21, G:0.20, T:0.21
Consensus pattern (254 bp):
TACAAGCCATAAGTACAATAATGTGATTGGCACAAAGCCATCAGTAGCAGTGATATGACCGGCAC
ACAACCATCAGTAACGGTAACATGAACGACAAAAAGCCATCAGTAACGATAACATGATCGGCACA
AAGCCATCAGTAACAGTGAAATGATCGGCACACAACCATCGGTAACGGTAATATGATCGACACAA
AACCATCAGTAACAGTACTATGATCGACATAAAGCCATCAGTACTATAAACAGAATGGC
Found at i:24860220 original size:24 final size:23
Alignment explanation
Indices: 24860186--24860268 Score: 76
Period size: 24 Copynumber: 3.5 Consensus size: 23
24860176 GCCATGCTCA
24860186 AAATCAGTCATTCAAATCACAGAC
1 AAATCAGTCATTCAAA-CACAGAC
* * * *
24860210 AAATCATTCATACCAGACACAGAA
1 AAATCAGTCAT-TCAAACACAGAC
* *
24860234 AAATCAGTCATTTAACCACAGAC
1 AAATCAGTCATTCAAACACAGAC
* *
24860257 AAAACAATCATT
1 AAATCAGTCATT
24860269 TGACCTCGAG
Statistics
Matches: 46, Mismatches: 12, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
23 17 0.37
24 26 0.57
25 3 0.07
ACGTcount: A:0.48, C:0.24, G:0.07, T:0.20
Consensus pattern (23 bp):
AAATCAGTCATTCAAACACAGAC
Found at i:24860347 original size:27 final size:27
Alignment explanation
Indices: 24860316--24860594 Score: 267
Period size: 27 Copynumber: 10.4 Consensus size: 27
24860306 GGCATTACAA
*
24860316 TCATTTTACCCTACAGGGGTATTATGG
1 TCATTTTACCCTACAGGGGTATTACGG
* *
24860343 TCATTTTACCCTACAAGGGCATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
*
24860370 TCATTTTACCCTACATGGGTATTTA--G
1 TCATTTTACCCTACAGGGGTA-TTACGG
* *
24860396 TCATTTTACCCTACAGGGGCATTACAG
1 TCATTTTACCCTACAGGGGTATTACGG
* * **
24860423 TCATTTTACTCTACAGGGGCATTACAA
1 TCATTTTACCCTACAGGGGTATTACGG
* *
24860450 TCAGTTTACCCTACAGTGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
* * * **
24860477 TTATTTTACCCTATAGGGGCATTATAG
1 TCATTTTACCCTACAGGGGTATTACGG
* *
24860504 TCATTTCACCCTACAAGGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
* * * **
24860531 TCATTTTACCTTATAAGGGTATTTTGG
1 TCATTTTACCCTACAGGGGTATTACGG
* * ** *
24860558 T-ATTCTACCCTACGGGGGTATTTTGA
1 TCATTTTACCCTACAGGGGTATTACGG
24860584 TCATTTTACCC
1 TCATTTTACCC
24860595 ATAAAGGATA
Statistics
Matches: 207, Mismatches: 41, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
25 3 0.01
26 40 0.19
27 161 0.78
28 3 0.01
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGTATTACGG
Found at i:24860374 original size:54 final size:54
Alignment explanation
Indices: 24860287--24860540 Score: 309
Period size: 54 Copynumber: 4.8 Consensus size: 54
24860277 AGGGGCAAAA
* **
24860287 ATAGTCA-TTTACCC-ACCAGGGCATTACAATCATTTTACCCTACAGGGGTATT
1 ATAGTCATTTTACCCTACAAGGGCATTACGGTCATTTTACCCTACAGGGGTATT
* *
24860339 ATGGTCATTTTACCCTACAAGGGCATTACGGTCATTTTACCCTACATGGGTATT
1 ATAGTCATTTTACCCTACAAGGGCATTACGGTCATTTTACCCTACAGGGGTATT
* * * *
24860393 -TAGTCATTTTACCCTACAGGGGCATTACAGTCATTTTACTCTACAGGGGCATT
1 ATAGTCATTTTACCCTACAAGGGCATTACGGTCATTTTACCCTACAGGGGTATT
* * * * * * *
24860446 ACAATCAGTTTACCCTAC-AGTGGTATTACGGTTATTTTACCCTATAGGGGCATT
1 ATAGTCATTTTACCCTACAAG-GGCATTACGGTCATTTTACCCTACAGGGGTATT
* *
24860500 ATAGTCATTTCACCCTACAAGGGTATTACGGTCATTTTACC
1 ATAGTCATTTTACCCTACAAGGGCATTACGGTCATTTTACC
24860541 TTATAAGGGT
Statistics
Matches: 172, Mismatches: 25, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
52 6 0.03
53 55 0.32
54 109 0.63
55 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (54 bp):
ATAGTCATTTTACCCTACAAGGGCATTACGGTCATTTTACCCTACAGGGGTATT
Done.