Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 83 of 222
Found at i:25960722 original size:40 final size:40
Alignment explanation
Indices: 25960669--25961020 Score: 614
Period size: 40 Copynumber: 8.8 Consensus size: 40
25960659 CAGCCGCAAA
* * * *
25960669 CATATTTGCCTTCGGGTCTTAACCCGGACATATGAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
* *
25960709 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCATCCCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
* *
25960749 CATAATTGCCTTCGGGTCATAGCCCGGATATATCAATTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
*
25960789 CATAATTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
25960829 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
*
25960869 CATAATTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
25960909 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
25960949 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
25960989 CATAATTGCCTTCGGGTCTTAGCCCGGATATA
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATA
25961021 ATCCAATGTT
Statistics
Matches: 296, Mismatches: 16, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 296 1.00
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.30
Consensus pattern (40 bp):
CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
Found at i:25965906 original size:11 final size:11
Alignment explanation
Indices: 25965890--25965914 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
25965880 TTATTTTTTA
25965890 TTTTTTTAAAT
1 TTTTTTTAAAT
25965901 TTTTTTTAAAT
1 TTTTTTTAAAT
25965912 TTT
1 TTT
25965915 AAAATATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTTTTTAAAT
Found at i:25965914 original size:18 final size:18
Alignment explanation
Indices: 25965893--25965982 Score: 56
Period size: 18 Copynumber: 5.6 Consensus size: 18
25965883 TTTTTTATTT
* *
25965893 TTTTAAATTTTTTTTAAA
1 TTTTAAAATATTTTTAAA
25965911 TTTTAAAATATTTTTAAA
1 TTTTAAAATATTTTTAAA
* *
25965929 ----ATACT-TTTTT-AA
1 TTTTAAAATATTTTTAAA
25965941 TTTTAAAATATTTTTAAA
1 TTTTAAAATATTTTTAAA
* *
25965959 --AT-AAAT-TTTTTTAA
1 TTTTAAAATATTTTTAAA
25965973 TTTTAAAATA
1 TTTTAAAATA
25965983 AATTTTTGGT
Statistics
Matches: 53, Mismatches: 9, Indels: 20
0.65 0.11 0.24
Matches are distributed among these distances:
12 2 0.04
13 5 0.09
14 10 0.19
15 4 0.08
16 5 0.09
17 9 0.17
18 18 0.34
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (18 bp):
TTTTAAAATATTTTTAAA
Found at i:25965914 original size:19 final size:19
Alignment explanation
Indices: 25965892--25965930 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
25965882 ATTTTTTATT
* * *
25965892 TTTTTAAATTTTTTTTAAA
1 TTTTAAAATATTTTTAAAA
25965911 TTTTAAAATATTTTTAAAA
1 TTTTAAAATATTTTTAAAA
25965930 T
1 T
25965931 ACTTTTTTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTTAAAATATTTTTAAAA
Found at i:25965937 original size:30 final size:31
Alignment explanation
Indices: 25965902--25965982 Score: 128
Period size: 30 Copynumber: 2.6 Consensus size: 31
25965892 TTTTTAAATT
25965902 TTTTTTAAATTTTAAAATATTTTTAAAAT-AC
1 TTTTTT-AATTTTAAAATATTTTTAAAATAAC
*
25965933 TTTTTTAATTTTAAAATATTTTTAAAATAAAT
1 TTTTTTAATTTTAAAATATTTTTAAAAT-AAC
25965965 TTTTTTAATTTTAAAATA
1 TTTTTTAATTTTAAAATA
25965983 AATTTTTGGT
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
30 22 0.47
31 6 0.13
32 19 0.40
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (31 bp):
TTTTTTAATTTTAAAATATTTTTAAAATAAC
Found at i:25965943 original size:20 final size:18
Alignment explanation
Indices: 25965922--25965982 Score: 67
Period size: 15 Copynumber: 3.6 Consensus size: 18
25965912 TTTAAAATAT
25965922 TTTTAAAATACTTTTTTAA
1 TTTTAAAATA-TTTTTTAA
25965941 TTTTAAAATA-TTTTTAA
1 TTTTAAAATATTTTTTAA
**
25965958 -AAT-AAAT-TTTTTTAA
1 TTTTAAAATATTTTTTAA
25965973 TTTTAAAATA
1 TTTTAAAATA
25965983 AATTTTTGGT
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
15 11 0.32
16 2 0.06
17 11 0.32
19 10 0.29
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTTAAAATATTTTTTAA
Found at i:25965968 original size:13 final size:11
Alignment explanation
Indices: 25965911--25965961 Score: 56
Period size: 11 Copynumber: 4.9 Consensus size: 11
25965901 TTTTTTTAAA
25965911 TTTTAAAATAT
1 TTTTAAAATAT
25965922 TTTTAAAATACT
1 TTTTAAAATA-T
*
25965934 TTTT----TAA
1 TTTTAAAATAT
25965941 TTTTAAAATAT
1 TTTTAAAATAT
25965952 TTTTAAAATA
1 TTTTAAAATA
25965962 AATTTTTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
7 4 0.12
8 2 0.06
11 22 0.67
12 5 0.15
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:25986346 original size:42 final size:42
Alignment explanation
Indices: 25986299--25986420 Score: 131
Period size: 42 Copynumber: 2.9 Consensus size: 42
25986289 ACTCCAATAT
* *
25986299 GTGATTTCGTATAAGACCATGTCTGGGATGTTGGCATCGTATA
1 GTGATTTCGTGTAAGACCATGTCTGGGAAGTTGGCATCG-ATA
* *
25986342 -TGATTTTGTGTAAGACCCTGTCTGGGACAG-TGGCATCGATA
1 GTGATTTCGTGTAAGACCATGTCTGGGA-AGTTGGCATCGATA
* * * *
25986383 GTTGATTACATGTAAGACCATGTTTGGGACGTTGGCAT
1 G-TGATTTCGTGTAAGACCATGTCTGGGAAGTTGGCAT
25986421 TGTACGAGCT
Statistics
Matches: 65, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
41 3 0.05
42 33 0.51
43 29 0.45
ACGTcount: A:0.23, C:0.15, G:0.29, T:0.34
Consensus pattern (42 bp):
GTGATTTCGTGTAAGACCATGTCTGGGAAGTTGGCATCGATA
Found at i:25993980 original size:21 final size:19
Alignment explanation
Indices: 25993951--25993995 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 19
25993941 CAAGTTGTTA
*
25993951 GATTATTATGTTTAATTAAG
1 GATTATTATGTGT-ATTAAG
*
25993971 TGATTTTTATGTGTATTAAG
1 -GATTATTATGTGTATTAAG
25993991 GATTA
1 GATTA
25993996 AATTGTGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 4 0.19
20 6 0.29
21 11 0.52
ACGTcount: A:0.31, C:0.00, G:0.18, T:0.51
Consensus pattern (19 bp):
GATTATTATGTGTATTAAG
Found at i:25994062 original size:457 final size:459
Alignment explanation
Indices: 25993447--25994359 Score: 1598
Period size: 457 Copynumber: 2.0 Consensus size: 459
25993437 AGAAATTGTT
*
25993447 GTTTTTGTTGTTTGATGATGGAAAATAAAATAAGTTGTTAGATTATTATGTTTAATTAAGTGATT
1 GTTTTTGTTGTTTGATGATGGAAAATAAAACAAGTTGTTAGATTATTATGTTTAATTAAGTGATT
*
25993512 TTTAGTAAAAATGTGTATTAAGGATTAAATTGTGACTTTTGTAAATTGAGGGGTCAAAATATAAA
66 TTTA-T---AATGTGTATTAAGGATTAAATTGTGAATTTTGTAAATTGAGGGGTCAAAATATAAA
* * *
25993577 AGAAATTAAATAAATTGGCTGCTATGAACCTTAGTAAAATTTGGCTATATTTGAGTTTGGTGAAA
127 AGAAATGAAATAAATGGGCTGCTATGAACCTTAGTAAAATTCGGCTATATTTGAGTTTGGTGAAA
25993642 TTTTGAATATTTTCTGTTTTGTGAAATAAGGACTAAATTGTGAAAAATGTAAAATGTTAGGGGAT
192 TTTTGAATATTTTCTGTTTTGTGAAATAAGGACTAAATTGTGAAAAATGTAAAATGTTAGGGGAT
*
25993707 AAAGTGCTAATTTCCCTTTTACATGGTTTTGGATGAATTTGAGTAAATATGTGATTAAATAAGTT
257 AAAGTGCTAATTGCCCTTTTACATGGTTTTGGATGAATTTGAGTAAATATGTGATTAAATAAGTT
25993772 AAATTTGTATTAAATTAGATCAAGAAAAGAGGAAATTAAATTTGGATCGGGGGAAATCAAAAGTT
322 AAATTTGTATTAAATTAGATCAAGAAAAGAGGAAATTAAATTTGGATCGGGGGAAATCAAAAGTT
* *
25993837 GTTGATTAGTCGTTCCGGTTCGTTCGTCTCCGCACAAGGTAAGTTCATAAGTGAATAAATGATGT
387 GTCGATTAGTCGTTCCGGTTCATTCGTCTCCGCACAAGGTAAGTTCATAAGTGAATAAATGATGT
25993902 TTAATTAA
452 TTAATTAA
25993910 GTTTTTGTTGTTTGATGATGGAAAATAAAAACAAGTTGTTAGATTATTATGTTTAATTAAGTGA-
1 GTTTTTGTTGTTTGATGATGGAAAAT-AAAACAAGTTGTTAGATTATTATGTTTAATTAAGTGAT
*
25993974 TTTT-T-ATGTGTATTAAGGATTAAATTGTGAATTTTGTAAATTGAGGGGTCAAAATATAAAATA
65 TTTTATAATGTGTATTAAGGATTAAATTGTGAATTTTGTAAATTGAGGGGTCAAAATATAAAAGA
*
25994037 AATGAAATAAATGGGCTGTTATGAACCTTAGTAAAATTCGGCTATATTTGAGTTTGGTGAAATTT
130 AATGAAATAAATGGGCTGCTATGAACCTTAGTAAAATTCGGCTATATTTGAGTTTGGTGAAATTT
*
25994102 TGAATATTTTCTGTTTTGTGAAATAATGACTAAATTGTGAAAAATGTAAAATGTTAGGGGATAAA
195 TGAATATTTTCTGTTTTGTGAAATAAGGACTAAATTGTGAAAAATGTAAAATGTTAGGGGATAAA
* **
25994167 GTGCTTATTGCCCTTTTATGTGGTTTTGGATGAATTTGAGTAAATATGTGATTAAATAAGTTAAA
260 GTGCTAATTGCCCTTTTACATGGTTTTGGATGAATTTGAGTAAATATGTGATTAAATAAGTTAAA
* *
25994232 TTTGTATTAAATTAGATCAAGAAAAGAGGAAATTGAATTTGGATTGGGGGAAATCAAAAGTTGTC
325 TTTGTATTAAATTAGATCAAGAAAAGAGGAAATTAAATTTGGATCGGGGGAAATCAAAAGTTGTC
* *
25994297 GATTAGTCGTTTCGGTTCATTCGTCTCCGCACGAGGTAAGTTCATAAGTGAATAAATGATGTT
390 GATTAGTCGTTCCGGTTCATTCGTCTCCGCACAAGGTAAGTTCATAAGTGAATAAATGATGTT
25994360 AAACTGAATG
Statistics
Matches: 431, Mismatches: 18, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
457 364 0.84
461 1 0.00
463 30 0.07
464 36 0.08
ACGTcount: A:0.35, C:0.06, G:0.21, T:0.38
Consensus pattern (459 bp):
GTTTTTGTTGTTTGATGATGGAAAATAAAACAAGTTGTTAGATTATTATGTTTAATTAAGTGATT
TTTATAATGTGTATTAAGGATTAAATTGTGAATTTTGTAAATTGAGGGGTCAAAATATAAAAGAA
ATGAAATAAATGGGCTGCTATGAACCTTAGTAAAATTCGGCTATATTTGAGTTTGGTGAAATTTT
GAATATTTTCTGTTTTGTGAAATAAGGACTAAATTGTGAAAAATGTAAAATGTTAGGGGATAAAG
TGCTAATTGCCCTTTTACATGGTTTTGGATGAATTTGAGTAAATATGTGATTAAATAAGTTAAAT
TTGTATTAAATTAGATCAAGAAAAGAGGAAATTAAATTTGGATCGGGGGAAATCAAAAGTTGTCG
ATTAGTCGTTCCGGTTCATTCGTCTCCGCACAAGGTAAGTTCATAAGTGAATAAATGATGTTTAA
TTAA
Found at i:26001301 original size:6 final size:6
Alignment explanation
Indices: 26001287--26001329 Score: 59
Period size: 6 Copynumber: 6.8 Consensus size: 6
26001277 AAGTTTCTCA
*
26001287 AAATGG AAATCG AAATGG AAATGG AAATGAG AAATGAG AAATG
1 AAATGG AAATGG AAATGG AAATGG AAATG-G AAATG-G AAATG
26001330 ATACATTTGC
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
6 21 0.62
7 13 0.38
ACGTcount: A:0.53, C:0.02, G:0.28, T:0.16
Consensus pattern (6 bp):
AAATGG
Found at i:26001322 original size:7 final size:7
Alignment explanation
Indices: 26001298--26001330 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
26001288 AATGGAAATC
26001298 GAAATG-
1 GAAATGA
26001304 GAAATG-
1 GAAATGA
26001310 GAAATGA
1 GAAATGA
26001317 GAAATGA
1 GAAATGA
26001324 GAAATGA
1 GAAATGA
26001331 TACATTTGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 12 0.46
7 14 0.54
ACGTcount: A:0.55, C:0.00, G:0.30, T:0.15
Consensus pattern (7 bp):
GAAATGA
Found at i:26008343 original size:26 final size:26
Alignment explanation
Indices: 26008312--26008459 Score: 170
Period size: 26 Copynumber: 5.6 Consensus size: 26
26008302 CAGAGTTTGG
* * *
26008312 CACAAAGTCTTTCCTTCATATTACGC
1 CACAAAGGCTTTCCTTCATTTTATGC
* *
26008338 CACAAAGGCTTTCTTTCATTTTATGT
1 CACAAAGGCTTTCCTTCATTTTATGC
* *
26008364 CACAAAGGCTTTCTTTCATTTTACGC
1 CACAAAGGCTTTCCTTCATTTTATGC
* *
26008390 CACAAAGGCGTTCCTTTCATTTTATGT
1 CACAAAGGCTTTCC-TTCATTTTATGC
* *
26008417 CATAAAGGCGTTCCTTTCATTTTATGC
1 CACAAAGGCTTTCC-TTCATTTTATGC
*
26008444 CACAAAGGCATTCCTT
1 CACAAAGGCTTTCCTT
26008460 TCCTGATGTG
Statistics
Matches: 106, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 59 0.56
27 47 0.44
ACGTcount: A:0.24, C:0.25, G:0.12, T:0.39
Consensus pattern (26 bp):
CACAAAGGCTTTCCTTCATTTTATGC
Found at i:26008376 original size:52 final size:53
Alignment explanation
Indices: 26008312--26008461 Score: 212
Period size: 52 Copynumber: 2.8 Consensus size: 53
26008302 CAGAGTTTGG
* * *
26008312 CACAAAGTCTTTCCTTCATATTACGCCACAAAGGC-TTTCTTTCATTTTATGT
1 CACAAAGGCTTTCCTTCATTTTACGCCACAAAGGCATTCCTTTCATTTTATGT
* *
26008364 CACAAAGGCTTTCTTTCATTTTACGCCACAAAGGCGTTCCTTTCATTTTATGT
1 CACAAAGGCTTTCCTTCATTTTACGCCACAAAGGCATTCCTTTCATTTTATGT
* * *
26008417 CATAAAGGCGTTCCTTTCATTTTATGCCACAAAGGCATTCCTTTC
1 CACAAAGGCTTTCC-TTCATTTTACGCCACAAAGGCATTCCTTTC
26008462 CTGATGTGTT
Statistics
Matches: 87, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
52 32 0.37
53 27 0.31
54 28 0.32
ACGTcount: A:0.24, C:0.25, G:0.12, T:0.39
Consensus pattern (53 bp):
CACAAAGGCTTTCCTTCATTTTACGCCACAAAGGCATTCCTTTCATTTTATGT
Found at i:26008412 original size:27 final size:26
Alignment explanation
Indices: 26008312--26008461 Score: 176
Period size: 27 Copynumber: 5.7 Consensus size: 26
26008302 CAGAGTTTGG
* * *
26008312 CACAAAGTCTTTCC-TTCATATTACGC
1 CACAAAGGC-TTCCTTTCATTTTATGC
* *
26008338 CACAAAGGCTTTCTTTCATTTTATGT
1 CACAAAGGCTTCCTTTCATTTTATGC
* *
26008364 CACAAAGGCTTTCTTTCATTTTACGC
1 CACAAAGGCTTCCTTTCATTTTATGC
*
26008390 CACAAAGGCGTTCCTTTCATTTTATGT
1 CACAAAGGC-TTCCTTTCATTTTATGC
*
26008417 CATAAAGGCGTTCCTTTCATTTTATGC
1 CACAAAGGC-TTCCTTTCATTTTATGC
26008444 CACAAAGGCATTCCTTTC
1 CACAAAGGC-TTCCTTTC
26008462 CTGATGTGTT
Statistics
Matches: 108, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
25 3 0.03
26 50 0.46
27 55 0.51
ACGTcount: A:0.24, C:0.25, G:0.12, T:0.39
Consensus pattern (26 bp):
CACAAAGGCTTCCTTTCATTTTATGC
Found at i:26008452 original size:54 final size:52
Alignment explanation
Indices: 26008312--26008461 Score: 203
Period size: 54 Copynumber: 2.8 Consensus size: 52
26008302 CAGAGTTTGG
* * *
26008312 CACAAAGTCTTTCC-TTCATATTACGCCACAAAGGCTTTCTTTCATTTTATGT
1 CACAAAGGC-TTCCTTTCATTTTACGCCACAAAGGCTTCCTTTCATTTTATGT
*
26008364 CACAAAGGCTTTCTTTCATTTTACGCCACAAAGGCGTTCCTTTCATTTTATGT
1 CACAAAGGCTTCCTTTCATTTTACGCCACAAAGGC-TTCCTTTCATTTTATGT
* *
26008417 CATAAAGGCGTTCCTTTCATTTTATGCCACAAAGGCATTCCTTTC
1 CACAAAGGC-TTCCTTTCATTTTACGCCACAAAGGC-TTCCTTTC
26008462 CTGATGTGTT
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
51 3 0.03
52 28 0.32
53 24 0.28
54 32 0.37
ACGTcount: A:0.24, C:0.25, G:0.12, T:0.39
Consensus pattern (52 bp):
CACAAAGGCTTCCTTTCATTTTACGCCACAAAGGCTTCCTTTCATTTTATGT
Found at i:26015038 original size:12 final size:12
Alignment explanation
Indices: 26015003--26015040 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
26014993 TCATTTTGCA
26015003 AGAAAAATAATC
1 AGAAAAATAATC
*
26015015 AGCCAAAA-AATC
1 AG-AAAAATAATC
26015027 AGAAAAATAATC
1 AGAAAAATAATC
26015039 AG
1 AG
26015041 TGCTCGGTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
11 4 0.18
12 14 0.64
13 4 0.18
ACGTcount: A:0.63, C:0.13, G:0.11, T:0.13
Consensus pattern (12 bp):
AGAAAAATAATC
Found at i:26021369 original size:17 final size:17
Alignment explanation
Indices: 26021349--26021381 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
26021339 AACAAAAAAT
*
26021349 AAAATTTAAAATCAAAC
1 AAAATTTAAAAGCAAAC
26021366 AAAATTTAAAAGCAAA
1 AAAATTTAAAAGCAAA
26021382 GTCCTTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.67, C:0.09, G:0.03, T:0.21
Consensus pattern (17 bp):
AAAATTTAAAAGCAAAC
Found at i:26022935 original size:18 final size:19
Alignment explanation
Indices: 26022904--26022940 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
26022894 AAATCAAAAT
26022904 ATTAATTAAACT-AATTAA
1 ATTAATTAAACTAAATTAA
26022922 ATTAA-TAAACCTAAATTAA
1 ATTAATTAAA-CTAAATTAA
26022941 CCTAATGGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 4 0.24
18 7 0.41
19 6 0.35
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (19 bp):
ATTAATTAAACTAAATTAA
Found at i:26023771 original size:20 final size:20
Alignment explanation
Indices: 26023746--26023819 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
26023736 ACATCCAGGA
26023746 TATGGCTCAACATAGGTTGC
1 TATGGCTCAACATAGGTTGC
*
26023766 TATGGCTCAACACAGGGTTTGC
1 TATGGCTCAACATA-GG-TTGC
* * *
26023788 TATTGCTCAACATAAGTTGT
1 TATGGCTCAACATAGGTTGC
26023808 TATGGCTCAACA
1 TATGGCTCAACA
26023820 CAAGGTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
20 27 0.59
21 3 0.07
22 16 0.35
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (20 bp):
TATGGCTCAACATAGGTTGC
Found at i:26028246 original size:19 final size:19
Alignment explanation
Indices: 26028200--26028252 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
26028190 TATTAATCTA
26028200 TTCATTTTTTATTTTAATATT
1 TTCA-TTTTTA-TTTAATATT
*
26028221 TTTATTTTTATTTAAT-TT
1 TTCATTTTTATTTAATATT
*
26028239 TTACATTTTAATTT
1 TT-CATTTTTATTT
26028253 TTCGTTTGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
18 4 0.14
19 15 0.54
20 6 0.21
21 3 0.11
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.72
Consensus pattern (19 bp):
TTCATTTTTATTTAATATT
Found at i:26033015 original size:47 final size:47
Alignment explanation
Indices: 26032961--26033054 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
26032951 CTTCTTTAGT
*
26032961 TAATTAATTTAGTTAATTTTATTTTGAATCAATCACTGCAATTTGTC
1 TAATTAATTTAGTTAATTTTAGTTTGAATCAATCACTGCAATTTGTC
26033008 TAATTAATTTAGTTAATTTTAGTTTGAATCAATCACTGCAATTTGTC
1 TAATTAATTTAGTTAATTTTAGTTTGAATCAATCACTGCAATTTGTC
26033055 AGTTAAATAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.32, C:0.11, G:0.10, T:0.48
Consensus pattern (47 bp):
TAATTAATTTAGTTAATTTTAGTTTGAATCAATCACTGCAATTTGTC
Found at i:26033263 original size:18 final size:19
Alignment explanation
Indices: 26033242--26033277 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
26033232 ACTCGTTTAG
*
26033242 TTTTCTTTTTCCA-TTTTT
1 TTTTCGTTTTCCACTTTTT
26033260 TTTTCGTTTTCCACTTTT
1 TTTTCGTTTTCCACTTTT
26033278 AAACTAACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.06, C:0.19, G:0.03, T:0.72
Consensus pattern (19 bp):
TTTTCGTTTTCCACTTTTT
Found at i:26037885 original size:51 final size:51
Alignment explanation
Indices: 26037720--26037906 Score: 159
Period size: 51 Copynumber: 3.7 Consensus size: 51
26037710 AGTGAAAGTG
* * *
26037720 ATGGTCACGTGTGTAGTACTATGTGCAGACTACTACGTGTACCAGAATGATA
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTA-CAGAATGGTA
* * * * * * *
26037772 GAT--T-GCATGTGTAGTACTATGTGCAAGCTACTATGCGTACTGGATAGT-
1 -ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACAGAATGGTA
* * ** *
26037820 TTCGATCATGTGTGTAGTACTATGTGCAGGCTACTACATGTATC-GAATGGTA
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTA-CAGAATGGTA
*
26037872 ATGGTCACATGTGTAGCACTATGTGCAGGCTACTA
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
26037907 TGTGAATCGA
Statistics
Matches: 103, Mismatches: 25, Indels: 14
0.73 0.18 0.10
Matches are distributed among these distances:
47 1 0.01
49 5 0.05
50 30 0.29
51 63 0.61
52 2 0.02
53 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (51 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACAGAATGGTA
Found at i:26037981 original size:45 final size:45
Alignment explanation
Indices: 26037917--26038004 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
26037907 TGTGAATCGA
* * *
26037917 ACATCATTGATTAGTAAGGTGGTTGCTATGTGCTGATTCCACCGG
1 ACATCATTGATTAATAAGGTGATTGCTATGTGCTGAATCCACCGG
26037962 ACATCATTGATTAATAAGGTGATTGCTATGTGCTGAATCCACC
1 ACATCATTGATTAATAAGGTGATTGCTATGTGCTGAATCCACC
26038005 AAGTATCTGT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (45 bp):
ACATCATTGATTAATAAGGTGATTGCTATGTGCTGAATCCACCGG
Found at i:26045437 original size:50 final size:50
Alignment explanation
Indices: 26045360--26045455 Score: 165
Period size: 50 Copynumber: 1.9 Consensus size: 50
26045350 AGGTGCTAAT
26045360 ATTTTATTATATGTGGTATGTCATGTATGCTTTATAAATGGAGTTTGCAA
1 ATTTTATTATATGTGGTATGTCATGTATGCTTTATAAATGGAGTTTGCAA
* **
26045410 ATTTTGTTATATGTGGTATGTGGTGTATGCTTTATAAATGGAGTTT
1 ATTTTATTATATGTGGTATGTCATGTATGCTTTATAAATGGAGTTT
26045456 TAGCTTTGCA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 43 1.00
ACGTcount: A:0.25, C:0.04, G:0.23, T:0.48
Consensus pattern (50 bp):
ATTTTATTATATGTGGTATGTCATGTATGCTTTATAAATGGAGTTTGCAA
Found at i:26046231 original size:41 final size:41
Alignment explanation
Indices: 26046174--26046256 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
26046164 TGCAAGGGCA
26046174 TTGCCTAGAGGCTTGGTATCAATACCTAAGCCCCTAAGTTC
1 TTGCCTAGAGGCTTGGTATCAATACCTAAGCCCCTAAGTTC
26046215 TTGCCTAGAGGCTTGGTATCAATACCTAAGCCCCTAAGTTC
1 TTGCCTAGAGGCTTGGTATCAATACCTAAGCCCCTAAGTTC
26046256 T
1 T
26046257 AATACCTAGG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (41 bp):
TTGCCTAGAGGCTTGGTATCAATACCTAAGCCCCTAAGTTC
Found at i:26047878 original size:34 final size:34
Alignment explanation
Indices: 26047835--26047903 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
26047825 TGAGACCGAT
*
26047835 TCAGGACAAAGCTGTTGCTAAGCAATTCCAACTA
1 TCAGGACAAAGCTGTTGCCAAGCAATTCCAACTA
26047869 TCAGGACAAAGCTGTTGCCAAGCAATTCCAACTA
1 TCAGGACAAAGCTGTTGCCAAGCAATTCCAACTA
26047903 T
1 T
26047904 AAGCCACCAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (34 bp):
TCAGGACAAAGCTGTTGCCAAGCAATTCCAACTA
Found at i:26057848 original size:105 final size:105
Alignment explanation
Indices: 26057713--26057925 Score: 381
Period size: 105 Copynumber: 2.0 Consensus size: 105
26057703 AAAACCCTAC
* * *
26057713 ACATCACAGTAGTGACAACTGACAACACAAAACTAAAGAACCGATAACTGCTAGCAGTGAAGTGT
1 ACATCACAGTAGTGACAACTGACAAAACAAAACTAAAGAACCAATAACTGCTAGCAGTAAAGTGT
* *
26057778 ATTAACCAAAGTTCATGTGCAGTCTCATTTTCATAGGCAT
66 ATGAACCAAAGTTCATGTGCAGTCTCATTTTCACAGGCAT
26057818 ACATCACAGTAGTGACAACTGACAAAACAAAACTAAAGAACCAATAACTGCTAGCAGTAAAGTGT
1 ACATCACAGTAGTGACAACTGACAAAACAAAACTAAAGAACCAATAACTGCTAGCAGTAAAGTGT
26057883 ATGAACCAAAGTTCATGTGCAGTCTCATTTTCACAGGCAT
66 ATGAACCAAAGTTCATGTGCAGTCTCATTTTCACAGGCAT
26057923 ACA
1 ACA
26057926 CCAATGCATG
Statistics
Matches: 103, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
105 103 1.00
ACGTcount: A:0.40, C:0.21, G:0.16, T:0.23
Consensus pattern (105 bp):
ACATCACAGTAGTGACAACTGACAAAACAAAACTAAAGAACCAATAACTGCTAGCAGTAAAGTGT
ATGAACCAAAGTTCATGTGCAGTCTCATTTTCACAGGCAT
Found at i:26059342 original size:12 final size:12
Alignment explanation
Indices: 26059325--26059350 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
26059315 AAAGAGAAGA
26059325 AAGGGGTAAACC
1 AAGGGGTAAACC
26059337 AAGGGGTAAACC
1 AAGGGGTAAACC
26059349 AA
1 AA
26059351 AACGGGTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.15, G:0.31, T:0.08
Consensus pattern (12 bp):
AAGGGGTAAACC
Found at i:26073524 original size:46 final size:46
Alignment explanation
Indices: 26073456--26073545 Score: 153
Period size: 46 Copynumber: 2.0 Consensus size: 46
26073446 TTTATTGCAA
* *
26073456 TAAGAGTTTTAGTTTTATTTATTTTCTTTATTATATCAGGTTTTAT
1 TAAGAGTTTTAGTTTTACTTATTTTCTCTATTATATCAGGTTTTAT
*
26073502 TAAGAGTTTTAGTTTTACTTATTTTCTCTATTATATTAGGTTTT
1 TAAGAGTTTTAGTTTTACTTATTTTCTCTATTATATCAGGTTTT
26073546 TATTTCCTTC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.23, C:0.06, G:0.11, T:0.60
Consensus pattern (46 bp):
TAAGAGTTTTAGTTTTACTTATTTTCTCTATTATATCAGGTTTTAT
Found at i:26074989 original size:46 final size:46
Alignment explanation
Indices: 26074911--26075000 Score: 117
Period size: 46 Copynumber: 2.0 Consensus size: 46
26074901 TTTATTGCAA
* * * * *
26074911 TAAGATTTTTAGTCTTATTTATTTTCTTTATTATATCAGGTTTTAT
1 TAAGAGTTTTAATCTTACTTATATTCTCTATTATATCAGGTTTTAT
* *
26074957 TAAGAGTTTTAATTTTACTTATATTCTCTATTATATTAGGTTTT
1 TAAGAGTTTTAATCTTACTTATATTCTCTATTATATCAGGTTTT
26075001 TATTTCCTTT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.26, C:0.07, G:0.09, T:0.59
Consensus pattern (46 bp):
TAAGAGTTTTAATCTTACTTATATTCTCTATTATATCAGGTTTTAT
Found at i:26081636 original size:25 final size:25
Alignment explanation
Indices: 26081608--26081701 Score: 90
Period size: 25 Copynumber: 3.8 Consensus size: 25
26081598 CTGCTCTTAT
*
26081608 GAGCGTCCCAA-TATATGGCTCTTCG
1 GAGCTTCCCAATTA-ATGGCTCTTCG
* *
26081633 GAGCTTCCCAATTAAAGGCTCTTTG
1 GAGCTTCCCAATTAATGGCTCTTCG
*
26081658 TGAGC-TCCTAATTAATGGCTC-TCTG
1 -GAGCTTCCCAATTAATGGCTCTTC-G
26081683 GAGCTTCCCAA-T-ATGGCTC
1 GAGCTTCCCAATTAATGGCTC
26081702 GCTTGAACTT
Statistics
Matches: 58, Mismatches: 7, Indels: 10
0.77 0.09 0.13
Matches are distributed among these distances:
23 7 0.12
24 6 0.10
25 39 0.67
26 6 0.10
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.31
Consensus pattern (25 bp):
GAGCTTCCCAATTAATGGCTCTTCG
Found at i:26081737 original size:25 final size:24
Alignment explanation
Indices: 26081672--26081737 Score: 71
Period size: 25 Copynumber: 2.8 Consensus size: 24
26081662 CTCCTAATTA
*
26081672 ATGGCTCTCTGGAGCTT-CCCAAT
1 ATGGCTCTCTAGAGCTTCCCCAAT
* * *
26081695 ATGGCTCGCTTGAACTTCCCCATAT
1 ATGGCTCTCTAGAGCTTCCCCA-AT
*
26081720 ATGGCTATCTAGAGCTTC
1 ATGGCTCTCTAGAGCTTC
26081738 TTGATTAATG
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
23 14 0.41
24 4 0.12
25 16 0.47
ACGTcount: A:0.20, C:0.29, G:0.20, T:0.32
Consensus pattern (24 bp):
ATGGCTCTCTAGAGCTTCCCCAAT
Found at i:26081857 original size:50 final size:52
Alignment explanation
Indices: 26081803--26081917 Score: 128
Period size: 50 Copynumber: 2.2 Consensus size: 52
26081793 TATGGTTATT
* *
26081803 ATGAGCTTCCCGTTATACAGCCCGA-ATA-AGCTTCCCG-TTATATGGCTCAC
1 ATGAGATTCCCGTTATACAGCCCGAGAAAGAGCTTCCCGTTTATAT-GCTCAC
* ** * *
26081853 ATGAGATTCCTGTTATATGGCTCGAGAAAGAGCTTCCCGTTTATATGCTCAT
1 ATGAGATTCCCGTTATACAGCCCGAGAAAGAGCTTCCCGTTTATATGCTCAC
26081905 ATGAGTATTCCCG
1 ATGAG-ATTCCCG
26081918 AATATGAATT
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
50 20 0.38
51 2 0.04
52 19 0.36
53 12 0.23
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.31
Consensus pattern (52 bp):
ATGAGATTCCCGTTATACAGCCCGAGAAAGAGCTTCCCGTTTATATGCTCAC
Found at i:26081862 original size:25 final size:25
Alignment explanation
Indices: 26081834--26081917 Score: 80
Period size: 25 Copynumber: 3.2 Consensus size: 25
26081824 CCGAATAAGC
*
26081834 TTCCCGTTATATGGCTCACATGAGA
1 TTCCCGTTATATGGCTCAAATGAGA
* * *
26081859 TTCCTGTTATATGGCTCGAGAAAGAGC
1 TTCCCGTTATATGGCTC-A-AATGAGA
*
26081886 TTCCCGTTTATAT-GCTCATATGAGTA
1 TTCCCG-TTATATGGCTCAAATGAG-A
26081912 TTCCCG
1 TTCCCG
26081918 AATATGAATT
Statistics
Matches: 47, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
25 20 0.43
26 8 0.17
27 13 0.28
28 6 0.13
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.35
Consensus pattern (25 bp):
TTCCCGTTATATGGCTCAAATGAGA
Found at i:26083001 original size:31 final size:29
Alignment explanation
Indices: 26082933--26083007 Score: 98
Period size: 31 Copynumber: 2.5 Consensus size: 29
26082923 TTTATTTTTT
26082933 ATTTTTTTAATTTTAAAATACTTTTTTTAAA
1 ATTTTTTTAATTTTAAAATA--TTTTTTAAA
26082964 ATTTTTTTAATTTTAAAATA-TTTTTAAA
1 ATTTTTTTAATTTTAAAATATTTTTTAAA
*
26082992 ATACATTTTTAATTTT
1 AT--TTTTTTAATTTT
26083008 TTTAATTTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
28 10 0.24
30 11 0.27
31 20 0.49
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (29 bp):
ATTTTTTTAATTTTAAAATATTTTTTAAA
Found at i:26083006 original size:39 final size:40
Alignment explanation
Indices: 26082943--26083040 Score: 153
Period size: 39 Copynumber: 2.4 Consensus size: 40
26082933 ATTTTTTTAA
*
26082943 TTTTAAAATACTTTTTTTAAAATTTTTTTAATTTTAAAATAT
1 TTTTAAAATAC-ATTTTT-AAATTTTTTTAATTTTAAAATAT
26082985 TTTTAAAATACATTTTT-AATTTTTTTAATTTTAAAATAT
1 TTTTAAAATACATTTTTAAATTTTTTTAATTTTAAAATAT
*
26083024 TTTTAAAATAAATTTTT
1 TTTTAAAATACATTTTT
26083041 TTTAATTTTT
Statistics
Matches: 54, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
39 38 0.70
41 5 0.09
42 11 0.20
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (40 bp):
TTTTAAAATACATTTTTAAATTTTTTTAATTTTAAAATAT
Found at i:26083075 original size:24 final size:23
Alignment explanation
Indices: 26083022--26083078 Score: 78
Period size: 23 Copynumber: 2.4 Consensus size: 23
26083012 ATTTTAAAAT
**
26083022 ATTTTTAAAATAAATTTTTTTTA
1 ATTTTTAAAATAAATTTTTGGTA
26083045 ATTTTTAAAATAAATTTTTGGTA
1 ATTTTTAAAATAAATTTTTGGTA
*
26083068 TTTATTTAAAA
1 ATT-TTTAAAA
26083079 AACGGGCCGG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 23 0.77
24 7 0.23
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (23 bp):
ATTTTTAAAATAAATTTTTGGTA
Found at i:26090356 original size:25 final size:25
Alignment explanation
Indices: 26090280--26090377 Score: 115
Period size: 25 Copynumber: 3.8 Consensus size: 25
26090270 GTCCCAATAT
26090280 ATGGCTCTTCGTGAGCTTCCCGATTA
1 ATGGCTCTTCG-GAGCTTCCCGATTA
* * **
26090306 AAGGCTCTTTGTGAGCTTCCTAATTA
1 ATGGCTCTTCG-GAGCTTCCCGATTA
* *
26090332 ATGGCTATCCGGAGCTTCCCGATTA
1 ATGGCTCTTCGGAGCTTCCCGATTA
*
26090357 ATGGCTCTTCGGAGCTACCCG
1 ATGGCTCTTCGGAGCTTCCCG
26090378 TTATTTACTC
Statistics
Matches: 59, Mismatches: 13, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
25 30 0.51
26 29 0.49
ACGTcount: A:0.18, C:0.27, G:0.23, T:0.32
Consensus pattern (25 bp):
ATGGCTCTTCGGAGCTTCCCGATTA
Found at i:26092751 original size:17 final size:18
Alignment explanation
Indices: 26092731--26092773 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
26092721 ATTTTAATTA
26092731 TTATTAAGTA-TTTTAAG
1 TTATTAAGTAGTTTTAAG
* *
26092748 TTATTTAGTAGTTTTATG
1 TTATTAAGTAGTTTTAAG
*
26092766 TTAATAAG
1 TTATTAAG
26092774 AAAGTTTAGA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (18 bp):
TTATTAAGTAGTTTTAAG
Found at i:26099101 original size:24 final size:24
Alignment explanation
Indices: 26099074--26099123 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
26099064 AAAGGATGCA
26099074 ATTCAATTAACTCGGCTTCTCAGC
1 ATTCAATTAACTCGGCTTCTCAGC
26099098 ATTCAATTAACTCGGCTTCTCAGC
1 ATTCAATTAACTCGGCTTCTCAGC
26099122 AT
1 AT
26099124 GCTGTACAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (24 bp):
ATTCAATTAACTCGGCTTCTCAGC
Found at i:26103142 original size:14 final size:15
Alignment explanation
Indices: 26103107--26103145 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
26103097 TCTTTATATA
26103107 TAATATTTATATGTC
1 TAATATTTATATGTC
* *
26103122 AAATATTTAT-TTTC
1 TAATATTTATATGTC
26103136 TAATATTTAT
1 TAATATTTAT
26103146 GGTTATGGTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.36, C:0.05, G:0.03, T:0.56
Consensus pattern (15 bp):
TAATATTTATATGTC
Found at i:26105212 original size:50 final size:50
Alignment explanation
Indices: 26105132--26105374 Score: 369
Period size: 50 Copynumber: 4.8 Consensus size: 50
26105122 ATTTGGGTAA
* *
26105132 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
*
26105182 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
*
26105232 AGAGGTCCCATATAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * *
26105282 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGTATGGGCACCGACATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** *
26105332 AGTACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
26105375 TGTCATTATC
Statistics
Matches: 174, Mismatches: 18, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
50 141 0.81
51 33 0.19
ACGTcount: A:0.26, C:0.23, G:0.30, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:26106865 original size:27 final size:28
Alignment explanation
Indices: 26106835--26106889 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
26106825 TAAAATTTAA
26106835 ATTTTAAAATACTTTTAAAAT-ATTTTT
1 ATTTTAAAATACTTTTAAAATAATTTTT
* ** *
26106862 ATTTTTATTTATTTTTAAAATAATTTTT
1 ATTTTAAAATACTTTTAAAATAATTTTT
26106890 TAATGTTTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
27 17 0.74
28 6 0.26
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (28 bp):
ATTTTAAAATACTTTTAAAATAATTTTT
Found at i:26107103 original size:23 final size:23
Alignment explanation
Indices: 26107072--26107127 Score: 58
Period size: 24 Copynumber: 2.4 Consensus size: 23
26107062 GTCCAAAGCT
*
26107072 AAATGTAAAATTATCGAAACCTA
1 AAATCTAAAATTATCGAAACCTA
* * *
26107095 AAATCTAAAAATTATTGATATCTA
1 AAATCT-AAAATTATCGAAACCTA
*
26107119 AATTCTAAA
1 AAATCTAAA
26107128 TAAAAACCTA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 8 0.30
24 19 0.70
ACGTcount: A:0.52, C:0.11, G:0.05, T:0.32
Consensus pattern (23 bp):
AAATCTAAAATTATCGAAACCTA
Found at i:26107119 original size:24 final size:24
Alignment explanation
Indices: 26107078--26107127 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
26107068 AGCTAAATGT
26107078 AAAATTATCGAAACCTAAAATCTA
1 AAAATTATCGAAACCTAAAATCTA
* * * *
26107102 AAAATTATTGATATCTAAATTCTA
1 AAAATTATCGAAACCTAAAATCTA
26107126 AA
1 AA
26107128 TAAAAACCTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.52, C:0.12, G:0.04, T:0.32
Consensus pattern (24 bp):
AAAATTATCGAAACCTAAAATCTA
Found at i:26107558 original size:21 final size:21
Alignment explanation
Indices: 26107519--26107558 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
26107509 CCGTTCACTT
*
26107519 TTGCTTCTCCCTTTGTTTTCC
1 TTGCTTCTCCCTTTCTTTTCC
* *
26107540 TTGCTTTTCCTTTTCTTTT
1 TTGCTTCTCCCTTTCTTTT
26107559 TACCAAATGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.00, C:0.28, G:0.07, T:0.65
Consensus pattern (21 bp):
TTGCTTCTCCCTTTCTTTTCC
Found at i:26108535 original size:23 final size:22
Alignment explanation
Indices: 26108479--26108536 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
26108469 GTTATTTAAA
* *
26108479 CTCCATTTTTTTTCTTTTCTTT
1 CTCCATTTCTTTTCTTTGCTTT
* * *
26108501 CTTCACTACTTTTCTTTGCTCTT
1 CTCCATTTCTTTTCTTTGCT-TT
26108524 CTCCATTTCTTTT
1 CTCCATTTCTTTT
26108537 TGGTTGGTTT
Statistics
Matches: 27, Mismatches: 8, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
22 15 0.56
23 12 0.44
ACGTcount: A:0.07, C:0.28, G:0.02, T:0.64
Consensus pattern (22 bp):
CTCCATTTCTTTTCTTTGCTTT
Found at i:26115224 original size:19 final size:19
Alignment explanation
Indices: 26115200--26115312 Score: 172
Period size: 19 Copynumber: 5.8 Consensus size: 19
26115190 AATTTTTGAG
26115200 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
26115219 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
26115238 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
26115259 GATATACAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
26115278 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
26115297 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
26115313 ATATATGATT
Statistics
Matches: 86, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
19 68 0.79
21 18 0.21
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:26115245 original size:40 final size:40
Alignment explanation
Indices: 26115201--26115312 Score: 192
Period size: 40 Copynumber: 2.9 Consensus size: 40
26115191 ATTTTTGAGG
*
26115201 ATATGCAATCTTAGATATGATATGCAATCCTAGATATGAT
1 ATATGCAATCTTAGATATGATATGCAATCTTAGATATGAT
*
26115241 ATATGCAATCTTAGATATGATATACAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGATATGCAATCTTAGATATGAT
26115281 ATAT--AATCTTAGATATGATATGCAATCTTAGA
1 ATATGCAATCTTAGATATGATATGCAATCTTAGA
26115313 ATATATGATT
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
38 27 0.39
40 42 0.61
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (40 bp):
ATATGCAATCTTAGATATGATATGCAATCTTAGATATGAT
Found at i:26115269 original size:59 final size:57
Alignment explanation
Indices: 26115200--26115312 Score: 172
Period size: 59 Copynumber: 1.9 Consensus size: 57
26115190 AATTTTTGAG
* *
26115200 GATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
1 GATATACAATCTTAGATATGATATACAATCCTAGATATG--ATATGCAATCTTAGATAT
* *
26115259 GATATACAATCTTAGATATGATATATAATCTTAGATATGATATGCAATCTTAGA
1 GATATACAATCTTAGATATGATATACAATCCTAGATATGATATGCAATCTTAGA
26115313 ATATATGATT
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
57 15 0.30
59 35 0.70
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (57 bp):
GATATACAATCTTAGATATGATATACAATCCTAGATATGATATGCAATCTTAGATAT
Found at i:26116105 original size:25 final size:26
Alignment explanation
Indices: 26116072--26116121 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
26116062 TACATGTATA
26116072 TATATTTTTTAAAACGAATATTTTCT
1 TATATTTTTTAAAACGAATATTTTCT
* *
26116098 TATATTTTTT-TAATGAATATTTTC
1 TATATTTTTTAAAACGAATATTTTC
26116122 ATATTTATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 12 0.55
26 10 0.45
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.58
Consensus pattern (26 bp):
TATATTTTTTAAAACGAATATTTTCT
Found at i:26116957 original size:97 final size:98
Alignment explanation
Indices: 26116790--26116983 Score: 345
Period size: 97 Copynumber: 2.0 Consensus size: 98
26116780 AAAAATCATG
26116790 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTT
26116855 AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
66 AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
* * *
26116888 AAGGAAATATTTCGAGTTTGGGATTCTAAAGGGA-TGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTT
*
26116952 AAATCTTGGATGAGTGGATGTTCTTTTAAAGT
66 AAATCTTGGATAAGTGGATGTTCTTTTAAAGT
26116984 TTTATTGTAT
Statistics
Matches: 92, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
97 61 0.66
98 31 0.34
ACGTcount: A:0.28, C:0.10, G:0.25, T:0.37
Consensus pattern (98 bp):
AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTT
AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
Found at i:26122783 original size:12 final size:12
Alignment explanation
Indices: 26122762--26122793 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
26122752 AGTTCAGATT
26122762 AAAA-AAAACAA
1 AAAATAAAACAA
26122773 AAAATAAAACAA
1 AAAATAAAACAA
26122785 AAAATAAAA
1 AAAATAAAA
26122794 GTGAAAGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.20
12 16 0.80
ACGTcount: A:0.88, C:0.06, G:0.00, T:0.06
Consensus pattern (12 bp):
AAAATAAAACAA
Found at i:26124195 original size:44 final size:44
Alignment explanation
Indices: 26124147--26124327 Score: 129
Period size: 44 Copynumber: 4.1 Consensus size: 44
26124137 GGAAAAGGTT
26124147 GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
1 GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
* ** * *
26124191 GAAGATGGCGGATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATT
1 GAAGATTGTAGATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATC
* *** * * * * * * * *
26124235 TAAGCCA-CCAAG-CCTTGTCTCCCTCAGGAGTAGCGGAGAAGGTT
1 GAAG--ATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
26124279 GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
1 GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
26124323 GAAGA
1 GAAGA
26124328 CGGCGAATCT
Statistics
Matches: 98, Mismatches: 29, Indels: 20
0.67 0.20 0.14
Matches are distributed among these distances:
42 5 0.05
43 8 0.08
44 74 0.76
45 7 0.07
46 4 0.04
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (44 bp):
GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
Found at i:26124283 original size:132 final size:132
Alignment explanation
Indices: 26124046--26124434 Score: 688
Period size: 132 Copynumber: 2.9 Consensus size: 132
26124036 TTGCATTGAC
* *
26124046 AGTGGATCAGATCGAAGACGACGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* *
26124111 CAAGCCTTTTCTCCCTCAGCAGCAGCGGAAAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
26124176 GT
131 GT
* *
26124178 AGTGGAGCAGATCGAAGATGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* *
26124243 CAAGCCTTGTCTCCCTCAGGAGTAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
26124308 GT
131 GT
26124310 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* *
26124375 CAAGCCTTGTCTCCCTCAGCAGCAGTGGAGAAGGTTGAAGATTGTAGATCCTATCTCCCT
66 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCT
26124435 GAAGTTGCAG
Statistics
Matches: 243, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 243 1.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (132 bp):
AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
GT
Found at i:26124557 original size:44 final size:43
Alignment explanation
Indices: 26124426--26125236 Score: 479
Period size: 44 Copynumber: 18.7 Consensus size: 43
26124416 TTGTAGATCC
** * * *
26124426 TATCTCCCTGAAGTTGCAGTGGAGTGGATTAA-AACCTTAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCT
* * * * * * *
26124470 TATCTCTCTAAAGTTGCAG-AGAGCAGA-T-CGCATCTAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
*
26124510 TATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCT
* * *
26124554 TATC-CTCCTCAAGTTGCAGTGGGGCAGACTGAAGATGGCAAGTCT
1 TATCTC-CCTGAAGTTGCAGTGGAGCAGACT-AAGA-AGCAAGTCT
* * *
26124599 TATCTCCCTGAAGTTGCAGTGGAGCAGA-TTA-AAGCCAATAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGTCT
* * * * *
26124643 TATCTCCCTGAAATTGCAGTGGAGCGGATTAA-AACCTTAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCT
* * * * * * *
26124687 TATCTCTCTGAAGTTACAG-AGAGCAGA-T-CGCATCAAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
*
26124727 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGTAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCT
* * * *
26124771 TATC-CTCCTCAAGTTGCAGTGGGGCAGAATGAAGATGGCAAGTCT
1 TATCTC-CCTGAAGTTGCAGTGGAGCAGACT-AAGA-AGCAAGTCT
* * *
26124816 TATCTCCCTGAAGTTGCAGTGGAGCAGA-TTA-AAGCCAATAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGTCT
* * * *
26124860 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAA-AACCTTAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCT
* * * * * * *
26124904 TATCTCTCTGAAGTTGTAG-AGAGCAGA-T-CGCATCAAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
26124944 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCT
* * * *
26124988 TATC-CTCCTAAAGTTACAGTGGGGCAGACTGAAGATCGCAAGTCT
1 TATCTC-CCTGAAGTTGCAGTGGAGCAGACT-AAGA-AGCAAGTCT
* ** * * *
26125033 TATCTCCCTGAAGTTGTAGTGGAATAGA-TTA-AAGCCGATAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGTCT
* * * *
26125077 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAA-AACCTTAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCT
* * * * * *
26125121 TATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CGCATCTAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
* * *
26125161 TATCTCTCTGAAGTTGCAGTGAAGCAGACTAAATAAGCAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGAAGCAAGTCT
*
26125205 TAT-TGTCCTGAAGTTGCAGT-GAGGCAGACTAA
1 TATCT-CCCTGAAGTTGCAGTGGA-GCAGACTAA
26125237 AGATGACACT
Statistics
Matches: 592, Mismatches: 126, Indels: 99
0.72 0.15 0.12
Matches are distributed among these distances:
40 81 0.14
41 38 0.06
42 22 0.04
43 42 0.07
44 294 0.50
45 112 0.19
46 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (43 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
Found at i:26124617 original size:89 final size:87
Alignment explanation
Indices: 26124505--26125236 Score: 435
Period size: 89 Copynumber: 8.4 Consensus size: 87
26124495 GATCGCATCT
* *
26124505 AGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATC-CTCCTCAAGTT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCTTATCTC-CCTGAAGTT
* *
26124569 GCAGTGGGGCAGACTGAAGATGGCA
64 GCAGTGGAGCAGA-TGAAGATAGCA
* * * *
26124594 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTA-AAGCCAATAATCCTATCTCCCTGAAAT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGTCTTATCTCCCTGAAGT
* * * *
26124657 TGCAGTGGAGCGGATTAA-A-ACCTT
63 TGCAGTGGAGCAGATGAAGATAGC-A
* * * * * * *
26124681 AGATCTTATCTCTCTGAAGTTACAG-AGAGCAGA-T-CGCATCAAATCTTATCTCCCTGAAGTTG
1 AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCTTATCTCCCTGAAGTTG
*
26124743 CAGTGGAGCAGACT-AAG-TAAGTA
65 CAGTGGAGCAGA-TGAAGAT-AGCA
* * * *
26124766 AGTCTTATC-CTCCTCAAGTTGCAGTGGGGCAGAATGAAGATGGCAAGTCTTATCTCCCTGAAGT
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGAGCAGACT-AAGA-AGCAAGTCTTATCTCCCTGAAGT
* ** **
26124830 TGCAGTGGAGCAGATTAAAGCCAATA
63 TGCAGTGGAGCAGA-TGAAGATAGCA
* * * * * *
26124856 A-TCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAA-AACCTTAGATCTTATCTCTCTGAAGTT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCTTATCTCCCTGAAGTT
* * *
26124919 GTAG-AGAGCAGATCG--CAT--CA
64 GCAGTGGAGCAGAT-GAAGATAGCA
* *
26124939 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATC-CTCCTAAAGTT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCTTATCTC-CCTGAAGTT
* * *
26125003 ACAGTGGGGCAGACTGAAGATCGCA
64 GCAGTGGAGCAGA-TGAAGATAGCA
* ** * * *
26125028 AGTCTTATCTCCCTGAAGTTGTAGTGGAATAGA-TTA-AAGCCGATAATCCTATCTCCCTGAAGT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGTCTTATCTCCCTGAAGT
* * * *
26125091 TGCAGTGGAGCGGATTAA-A-ACCTT
63 TGCAGTGGAGCAGATGAAGATAGC-A
* * * * * * *
26125115 AGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CGCATCTAGTCTTATCTCTCTGAAGTTG
1 AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCTTATCTCCCTGAAGTTG
*
26125177 CAGTGAAGCAGACT-AA-ATAAGCA
65 CAGTGGAGCAGA-TGAAGAT-AGCA
*
26125200 AGTCTTAT-TGTCCTGAAGTTGCAGT-GAGGCAGACTAA
1 AGTCTTATCT-CCCTGAAGTTGCAGTGGA-GCAGACTAA
26125237 AGATGACACT
Statistics
Matches: 496, Mismatches: 99, Indels: 98
0.72 0.14 0.14
Matches are distributed among these distances:
83 5 0.01
84 148 0.30
85 27 0.05
86 21 0.04
87 36 0.07
88 75 0.15
89 174 0.35
90 10 0.02
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.27
Consensus pattern (87 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCTTATCTCCCTGAAGTTGC
AGTGGAGCAGATGAAGATAGCA
Found at i:26124665 original size:217 final size:217
Alignment explanation
Indices: 26124422--26125241 Score: 1397
Period size: 217 Copynumber: 3.8 Consensus size: 217
26124412 AAGATTGTAG
* *
26124422 ATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTAGATCTTATCTCTCTAAAGTTGC
1 ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGC
* * *
26124487 AGAGAGCAGATCGCATCTAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGT
66 AGAGAGCAGATCGCATCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGT
26124552 CTTATCCTCCTCAAGTTGCAGTGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCA
131 CTTATCCTCCTCAAGTTGCAGTGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCA
26124617 GTGGAGCAGATTAAAGCCAATA
196 GTGGAGCAGATTAAAGCCAATA
* *
26124639 ATCCTATCTCCCTGAAATTGCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTAC
1 ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGC
*
26124704 AGAGAGCAGATCGCATCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGTAAGT
66 AGAGAGCAGATCGCATCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGT
*
26124769 CTTATCCTCCTCAAGTTGCAGTGGGGCAGAATGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCA
131 CTTATCCTCCTCAAGTTGCAGTGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCA
26124834 GTGGAGCAGATTAAAGCCAATA
196 GTGGAGCAGATTAAAGCCAATA
*
26124856 ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGT
1 ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGC
26124921 AGAGAGCAGATCGCATCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGT
66 AGAGAGCAGATCGCATCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGT
* * * *
26124986 CTTATCCTCCTAAAGTTACAGTGGGGCAGACTGAAGATCGCAAGTCTTATCTCCCTGAAGTTGTA
131 CTTATCCTCCTCAAGTTGCAGTGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCA
** *
26125051 GTGGAATAGATTAAAGCCGATA
196 GTGGAGCAGATTAAAGCCAATA
26125073 ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGC
1 ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGC
* * * * *
26125138 AGAGAGCAGATCGCATCTAGTCTTATCTCTCTGAAGTTGCAGTGAAGCAGACTAAATAAGCAAGT
66 AGAGAGCAGATCGCATCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGT
** * * *
26125203 CTTATTGTCCTGAAGTTGCAGTGAGGCAGACTAAAGATG
131 CTTATCCTCCTCAAGTTGCAGTGGGGCAGACTGAAGATG
26125242 ACACTAATTC
Statistics
Matches: 569, Mismatches: 34, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
217 569 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (217 bp):
ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGC
AGAGAGCAGATCGCATCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGT
CTTATCCTCCTCAAGTTGCAGTGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCA
GTGGAGCAGATTAAAGCCAATA
Found at i:26124730 original size:173 final size:173
Alignment explanation
Indices: 26124551--26124874 Score: 392
Period size: 173 Copynumber: 1.9 Consensus size: 173
26124541 AGTAAGCAAG
* * *
26124551 TCTTATC-CTCCTCAAGTTGCAGTGGGGCAGACTGAAG-ATGGCAAGTCTTAT-CTCCCTGAAGT
1 TCTTATCTC-CCTCAAGTTGCAGTGGAGCAGACT-AAGTA-AGCAAGTCTTATCCT-CCTCAAGT
* *
26124613 TGCAGTGGAGCAG-ATTAA-A-GCCAATAATCCTATCTCCCTGAAATTGCAGTGGAGCGGATTAA
62 TGCAGTGGAGCAGAATGAAGATGCC-A-AATCCTATCTCCCTGAAATTGCAGTGGAGCAGATTAA
* * *
26124675 AACC-TTAGATCTTATCTCTCTGAAGTTACAGAGAGCAGATCGCATCAAA
125 AACCAATA-ATCCTATCTCCCTGAAGTTACAGAGAGCAGATCGCATCAAA
* *
26124724 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGTAAGTCTTATCCTCCTCAAGTTGCA
1 TCTTATCTCCCTCAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTCAAGTTGCA
* * * * * *
26124789 GTGGGGCAGAATGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAA
66 GTGGAGCAGAATGAAGATGCCAAATCCTATCTCCCTGAAATTGCAGTGGAGCAGATTAAAACCAA
26124854 TAATCCTATCTCCCTGAAGTT
131 TAATCCTATCTCCCTGAAGTT
26124875 GCAGTGGAGC
Statistics
Matches: 128, Mismatches: 16, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
172 32 0.25
173 89 0.70
174 5 0.04
175 2 0.02
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (173 bp):
TCTTATCTCCCTCAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTCAAGTTGCA
GTGGAGCAGAATGAAGATGCCAAATCCTATCTCCCTGAAATTGCAGTGGAGCAGATTAAAACCAA
TAATCCTATCTCCCTGAAGTTACAGAGAGCAGATCGCATCAAA
Found at i:26124905 original size:133 final size:127
Alignment explanation
Indices: 26124722--26125188 Score: 290
Period size: 133 Copynumber: 3.6 Consensus size: 127
26124712 GATCGCATCA
* *
26124722 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGTAAGTCTTATC-CTCCTCAAGTT
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AACTAAGTCTTATCTCT-CTCAAGTT
* * * *
26124786 GCAGTGGGGCAGAAT-GAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG
64 GCAG-AGAGCAG-ATCG--CAT--CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG
26124850 CCAAT
123 CCAAT
* * * *
26124855 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAA-AACCTTAGATCTTATCTCTCTGAAGTT
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAA-CTAAG-TCTTATCTCTCTCAAGTT
* * * *
26124919 GTAGAGAGCAGATCGCATCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAG-TAAGC
64 GCAGAGAGCAGATCGCATCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAA-T
* * * * * * * *
26124982 AAGTCTTATC-CTCCTAAAGTTACAGTGGGGCAGACTGAAGATCGCAAGTCTTATCTCCCTGAAG
1 AA-TCCTATCTC-CCTGAAGTTGCAGTGGAGCAGACT-AAGAAC-TAAGTCTTATCTCTCTCAAG
* * ** *** * * * *
26125046 TTGTAGTGGAATAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAA
62 TTGCAG-AGAGCAGATCGCA-TC-A-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG
*
26125111 CC-TT
123 CCAAT
* * * * * *
26125115 AGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CGCATCT-AGTCTTATCTCTCTGAAGTT
1 A-ATCCTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AACTAAGTCTTATCTCTCTCAAGTT
*
26125176 GCAGTGAAGCAGA
64 GCAGAG-AGCAGA
26125189 CTAAATAAGC
Statistics
Matches: 264, Mismatches: 50, Indels: 45
0.74 0.14 0.13
Matches are distributed among these distances:
126 2 0.01
127 7 0.03
128 86 0.33
129 25 0.09
130 15 0.06
131 6 0.02
132 16 0.06
133 101 0.38
134 6 0.02
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (127 bp):
AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAACTAAGTCTTATCTCTCTCAAGTTGC
AGAGAGCAGATCGCATCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAAT
Found at i:26125434 original size:19 final size:19
Alignment explanation
Indices: 26125410--26125541 Score: 219
Period size: 19 Copynumber: 6.8 Consensus size: 19
26125400 AATTTTTGAG
26125410 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
26125429 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
26125448 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
26125467 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
26125488 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
26125507 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
26125526 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
26125542 ATATATGATT
Statistics
Matches: 105, Mismatches: 6, Indels: 4
0.91 0.05 0.03
Matches are distributed among these distances:
19 86 0.82
21 19 0.18
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:26125477 original size:59 final size:57
Alignment explanation
Indices: 26125410--26125548 Score: 219
Period size: 59 Copynumber: 2.4 Consensus size: 57
26125400 AATTTTTGAG
*
26125410 GATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATACAATCTTAGATAT
* *
26125467 GATATATGCAATCTTAGATATGATATGCAATCTTAGATATGATATATAATCTTAGATAT
1 G--ATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATACAATCTTAGATAT
26125526 GATATGCAATCTTAGA-AT-ATATG
1 GATATGCAATCTTAGATATGATATG
26125549 ATTTTGTAAT
Statistics
Matches: 77, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
55 5 0.06
56 2 0.03
57 16 0.21
59 54 0.70
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (57 bp):
GATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATACAATCTTAGATAT
Found at i:26126328 original size:25 final size:26
Alignment explanation
Indices: 26126295--26126344 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
26126285 TACATGTATA
26126295 TATATTTTTTAAAACGAATATTTTCT
1 TATATTTTTTAAAACGAATATTTTCT
* *
26126321 TATATTTTTT-TAATGAATATTTTC
1 TATATTTTTTAAAACGAATATTTTC
26126345 ATATTTATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 12 0.55
26 10 0.45
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.58
Consensus pattern (26 bp):
TATATTTTTTAAAACGAATATTTTCT
Found at i:26127135 original size:98 final size:98
Alignment explanation
Indices: 26127012--26127206 Score: 345
Period size: 98 Copynumber: 2.0 Consensus size: 98
26127002 AAAAATCATG
*
26127012 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
26127077 AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
66 AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
* * *
26127110 AAGGAAATATTCCGAGTTTGGGATTCTAAAGGGATCGTGCCGTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
*
26127175 AAATCTTGGATGAGTGGATGTTCTTTTAAAGT
66 AAATCTTGGATAAGTGGATGTTCTTTTAAAGT
26127207 TTTATTGTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 92 1.00
ACGTcount: A:0.28, C:0.10, G:0.26, T:0.36
Consensus pattern (98 bp):
AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
Found at i:26143138 original size:23 final size:23
Alignment explanation
Indices: 26143110--26143166 Score: 105
Period size: 23 Copynumber: 2.5 Consensus size: 23
26143100 GAAACTAAAA
*
26143110 TTTTCTTTTCTCTTACCTTGTAT
1 TTTTCTTTTATCTTACCTTGTAT
26143133 TTTTCTTTTATCTTACCTTGTAT
1 TTTTCTTTTATCTTACCTTGTAT
26143156 TTTTCTTTTAT
1 TTTTCTTTTAT
26143167 TGTCTTCCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.11, C:0.18, G:0.04, T:0.68
Consensus pattern (23 bp):
TTTTCTTTTATCTTACCTTGTAT
Found at i:26144002 original size:27 final size:27
Alignment explanation
Indices: 26143964--26144062 Score: 92
Period size: 27 Copynumber: 3.7 Consensus size: 27
26143954 ACATGCAATA
* * *
26143964 AAATGGAAGCCTTTGTAGAAATCTATG
1 AAATGAAAGCCTTTGTGGAAATATATG
* * *
26143991 AAATGAAAGCCTTTATGGCAATATATT
1 AAATGAAAGCCTTTGTGGAAATATATG
* * *
26144018 AAATTAAAGCCCTTGTGGAAATTTATG
1 AAATGAAAGCCTTTGTGGAAATATATG
*
26144045 AAATGGAAG-CTTTCGTGG
1 AAATGAAAGCCTTT-GTGG
26144063 CGATCTATGG
Statistics
Matches: 56, Mismatches: 15, Indels: 2
0.77 0.21 0.03
Matches are distributed among these distances:
26 3 0.05
27 53 0.95
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.31
Consensus pattern (27 bp):
AAATGAAAGCCTTTGTGGAAATATATG
Found at i:26144262 original size:27 final size:27
Alignment explanation
Indices: 26144224--26144311 Score: 95
Period size: 27 Copynumber: 3.2 Consensus size: 27
26144214 GAATGATAAC
* * *
26144224 TATGACAAACTCTGAAGGACTAGTAGG
1 TATGGCAAACTCTGAAGGAATAGTACG
* *
26144251 TATGGTAAACTCTGAAAGAATAGTACG
1 TATGGCAAACTCTGAAGGAATAGTACG
* * *
26144278 TATGGCGAACTTTGAAGGAATAAGTATG
1 TATGGCAAACTCTGAAGGAAT-AGTACG
26144306 TATGGC
1 TATGGC
26144312 GAGGTCTGAG
Statistics
Matches: 50, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
27 39 0.78
28 11 0.22
ACGTcount: A:0.36, C:0.11, G:0.26, T:0.26
Consensus pattern (27 bp):
TATGGCAAACTCTGAAGGAATAGTACG
Found at i:26146882 original size:27 final size:27
Alignment explanation
Indices: 26146852--26146904 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
26146842 CTAGGCCATT
* * *
26146852 TGGCGATCCTTGTTTTGCCAAACCCGC
1 TGGCGATCCTTGCTTCGACAAACCCGC
26146879 TGGCGATCCTTGCTTCGACAAACCCG
1 TGGCGATCCTTGCTTCGACAAACCCG
26146905 TTGCCGATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.17, C:0.34, G:0.23, T:0.26
Consensus pattern (27 bp):
TGGCGATCCTTGCTTCGACAAACCCGC
Found at i:26146912 original size:27 final size:27
Alignment explanation
Indices: 26146855--26146912 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
26146845 GGCCATTTGG
* * * *
26146855 CGATCCTTGTTTTGCCAAACCCGCTGG
1 CGATCCTTGCTTCGACAAACCCGCTGC
*
26146882 CGATCCTTGCTTCGACAAACCCGTTGC
1 CGATCCTTGCTTCGACAAACCCGCTGC
26146909 CGAT
1 CGAT
26146913 TATATTTCAC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.17, C:0.34, G:0.21, T:0.28
Consensus pattern (27 bp):
CGATCCTTGCTTCGACAAACCCGCTGC
Found at i:26147167 original size:55 final size:54
Alignment explanation
Indices: 26147075--26147191 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 54
26147065 ATAAAAAATG
* * *
26147075 AAATGAAATTGGACCTCACAACAACGCCTTCACAACAAAATGTGACATAAATGAA
1 AAATGAAATTGGACATCACAACAACGCCTTCAAAACAAAATGTAACATAAAT-AA
* * ** *
26147130 GAATGAAATTGGACATCATAATTA-GCCTTCTAAAACAAAATGTAACATGAATAA
1 AAATGAAATTGGACATCACAACAACGCCTTC-AAAACAAAATGTAACATAAATAA
26147184 AAATGAAA
1 AAATGAAA
26147192 CCAAACCTCA
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
54 15 0.29
55 37 0.71
ACGTcount: A:0.50, C:0.16, G:0.13, T:0.21
Consensus pattern (54 bp):
AAATGAAATTGGACATCACAACAACGCCTTCAAAACAAAATGTAACATAAATAA
Found at i:26147285 original size:59 final size:59
Alignment explanation
Indices: 26147222--26147383 Score: 192
Period size: 54 Copynumber: 2.8 Consensus size: 59
26147212 ACTTAAATAG
26147222 AATGCAACATAAATGAAAATGAAATGAAATTGGACCTTAAAACTAGGCCTCTAAAACAA
1 AATGCAACATAAATGAAAATGAAATGAAATTGGACCTTAAAACTAGGCCTCTAAAACAA
* * * *
26147281 AATGCAACATAAATG---A--AAATGAAATTGGA-CTTCATAACCAGGCCTCTAAAATAG
1 AATGCAACATAAATGAAAATGAAATGAAATTGGACCTT-AAAACTAGGCCTCTAAAACAA
* * * * *
26147335 GATGCAACATAAATGAAAATGAAATGAAACTAGACCTCACAACTAGGCC
1 AATGCAACATAAATGAAAATGAAATGAAATTGGACCTTAAAACTAGGCC
26147384 CCTGGAAACA
Statistics
Matches: 86, Mismatches: 10, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
53 3 0.03
54 44 0.51
56 1 0.01
57 1 0.01
59 35 0.41
60 2 0.02
ACGTcount: A:0.48, C:0.17, G:0.15, T:0.20
Consensus pattern (59 bp):
AATGCAACATAAATGAAAATGAAATGAAATTGGACCTTAAAACTAGGCCTCTAAAACAA
Found at i:26147290 original size:113 final size:114
Alignment explanation
Indices: 26147131--26147383 Score: 305
Period size: 113 Copynumber: 2.2 Consensus size: 114
26147121 ATAAATGAAG
* * * * *
26147131 AATGAAATTGGACATCATAATTA-GCCTTCTAAAACAAAATGTAACATGAATAAAAATGAAACCA
1 AATGAAATTGGACCTCAAAACTAGGCCTTCTAAAACAAAATGCAACATAAATAAAAATGAAACCA
*
26147195 AACCTCACAACCAAG-CTACTTAAATAGAATGCAACATAAATGAAAATGA
66 AACCTCACAACCAAGCCT-CTAAAATAGAATGCAACATAAATGAAAATGA
* * ***
26147244 AATGAAATTGGACCTTAAAACTAGGCC-TCTAAAACAAAATGCAACATAAATGAAAATGAAATTG
1 AATGAAATTGGACCTCAAAACTAGGCCTTCTAAAACAAAATGCAACATAAATAAAAATGAAACCA
* * * * *
26147308 GACTTCATAACCAGGCCTCTAAAATAGGATGCAACATAAATGAAAATGA
66 AACCTCACAACCAAGCCTCTAAAATAGAATGCAACATAAATGAAAATGA
* * *
26147357 AATGAAACTAGACCTCACAACTAGGCC
1 AATGAAATTGGACCTCAAAACTAGGCC
26147384 CCTGGAAACA
Statistics
Matches: 118, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
113 113 0.96
114 5 0.04
ACGTcount: A:0.49, C:0.18, G:0.13, T:0.21
Consensus pattern (114 bp):
AATGAAATTGGACCTCAAAACTAGGCCTTCTAAAACAAAATGCAACATAAATAAAAATGAAACCA
AACCTCACAACCAAGCCTCTAAAATAGAATGCAACATAAATGAAAATGA
Found at i:26147325 original size:54 final size:54
Alignment explanation
Indices: 26147070--26147359 Score: 219
Period size: 54 Copynumber: 5.3 Consensus size: 54
26147060 TTCAAATAAA
* * * **
26147070 AAATG-AAATGAAATTGGACCTCACAACAACGCCT-TCACAACAAAATGTGACAT
1 AAATGAAAATGAAATTGGACCTCACAACCAGGCCTCT-AAAACAAAATGCAACAT
* * ** *
26147123 AAATGAAGAATGAAATTGGACATCATAATTA-GCCTTCTAAAACAAAATGTAACAT
1 AAATGAA-AATGAAATTGGACCTCACAACCAGGCC-TCTAAAACAAAATGCAACAT
* * **** * * * *
26147178 GAATAAAAATGAAACCAAACCTCACAACCAAG-CTACTTAAATAGAATGCAACAT
1 AAATGAAAATGAAATTGGACCTCACAACCAGGCCT-CTAAAACAAAATGCAACAT
* * *
26147232 AAATGAAAATGAAATGAAATTGGACCTTAAAACTAGGCCTCTAAAACAAAATGCAACAT
1 AAATG---A--AAATGAAATTGGACCTCACAACCAGGCCTCTAAAACAAAATGCAACAT
* * * **
26147291 AAATGAAAATGAAATTGGACTTCATAACCAGGCCTCTAAAATAGGATGCAACAT
1 AAATGAAAATGAAATTGGACCTCACAACCAGGCCTCTAAAACAAAATGCAACAT
26147345 AAATGAAAATGAAAT
1 AAATGAAAATGAAAT
26147360 GAAACTAGAC
Statistics
Matches: 185, Mismatches: 40, Indels: 23
0.75 0.16 0.09
Matches are distributed among these distances:
53 6 0.03
54 94 0.51
55 41 0.22
56 2 0.01
57 1 0.01
59 39 0.21
60 2 0.01
ACGTcount: A:0.49, C:0.17, G:0.13, T:0.21
Consensus pattern (54 bp):
AAATGAAAATGAAATTGGACCTCACAACCAGGCCTCTAAAACAAAATGCAACAT
Found at i:26154617 original size:43 final size:43
Alignment explanation
Indices: 26154562--26154746 Score: 307
Period size: 43 Copynumber: 4.3 Consensus size: 43
26154552 CTTAAAAACA
*
26154562 AAACGCCGCTAAAGAACATGATCTTTAGCAGCACTTTTATCAC
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCACTTTTATCAC
* * * * *
26154605 AAATGCCACTAAAAAACATGATCTTTAACGGCGCTTTTATCAC
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCACTTTTATCAC
*
26154648 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTTATCAC
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCACTTTTATCAC
26154691 AAACGCCGCTAAAGAACATGATCTTTAGCGGCACTTTTATCAC
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCACTTTTATCAC
26154734 AAACGCCGCTAAA
1 AAACGCCGCTAAA
26154747 AGTACGATTC
Statistics
Matches: 131, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 131 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGATCTTTAGCGGCACTTTTATCAC
Found at i:26154630 original size:86 final size:86
Alignment explanation
Indices: 26154535--26154746 Score: 273
Period size: 86 Copynumber: 2.5 Consensus size: 86
26154525 CGCTAAAGGT
* *
26154535 CATGTTCTTTAGCGGTGCTTAAAA-ACAAAACGCCGCTAAAGAACATGATCTTTAGCAGCACTTT
1 CATGATCTTTAGCGGCGCTTAAAACAC-AAACGCCGCTAAAGAACATGATCTTTAGCAGCACTTT
*
26154599 TATCACAAATGCCACTAAAAAA
65 TATCACAAACGCCACTAAAAAA
* ** * * *
26154621 CATGATCTTTAACGGCGCTTTTATCACAAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTT
1 CATGATCTTTAGCGGCGCTTAAAACACAAACGCCGCTAAAGAACATGATCTTTAGCAGCACTTTT
* *
26154686 ATCACAAACGCCGCTAAAGAA
66 ATCACAAACGCCACTAAAAAA
* ** *
26154707 CATGATCTTTAGCGGCACTTTTATCACAAACGCCGCTAAA
1 CATGATCTTTAGCGGCGCTTAAAACACAAACGCCGCTAAA
26154747 AGTACGATTC
Statistics
Matches: 112, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
86 110 0.98
87 2 0.02
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.26
Consensus pattern (86 bp):
CATGATCTTTAGCGGCGCTTAAAACACAAACGCCGCTAAAGAACATGATCTTTAGCAGCACTTTT
ATCACAAACGCCACTAAAAAA
Found at i:26156626 original size:40 final size:40
Alignment explanation
Indices: 26156563--26156647 Score: 118
Period size: 40 Copynumber: 2.1 Consensus size: 40
26156553 TAGCTTGAAT
* * *
26156563 ATCAACACTTCAATATTTAATATGTAAGGAATTATCAAAA
1 ATCAACACTTCAATATTTAATATGCAAGAAATTAACAAAA
*
26156603 ATCAACATTTCAATAATTT-ATATGCAAGAAATTAACAAAA
1 ATCAACACTTCAAT-ATTTAATATGCAAGAAATTAACAAAA
26156643 ATCAA
1 ATCAA
26156648 TCTTACAACA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
40 36 0.90
41 4 0.10
ACGTcount: A:0.51, C:0.13, G:0.06, T:0.31
Consensus pattern (40 bp):
ATCAACACTTCAATATTTAATATGCAAGAAATTAACAAAA
Found at i:26156663 original size:40 final size:40
Alignment explanation
Indices: 26156577--26156663 Score: 95
Period size: 40 Copynumber: 2.1 Consensus size: 40
26156567 ACACTTCAAT
* * * * *
26156577 ATTTAATATGTAAGGAATTATCAAAAATCAACATTTCAATA
1 ATTT-ATATGCAAGAAATTAACAAAAATCAACATTACAACA
26156618 ATTTATATGCAAGAAATTAACAAAAATCAATC-TTACAACA
1 ATTTATATGCAAGAAATTAACAAAAATCAA-CATTACAACA
*
26156658 GTTTAT
1 ATTTAT
26156664 GTGAAACAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
40 34 0.87
41 5 0.13
ACGTcount: A:0.48, C:0.11, G:0.07, T:0.33
Consensus pattern (40 bp):
ATTTATATGCAAGAAATTAACAAAAATCAACATTACAACA
Found at i:26159769 original size:146 final size:147
Alignment explanation
Indices: 26159314--26159904 Score: 1017
Period size: 147 Copynumber: 4.0 Consensus size: 147
26159304 GCGGCGTTTT
*
26159314 CTATTGCTTACCTTTAGCGGCGCTTCTTATAAAGCGCTGCAAAATTTTTTT-ATTTTGAACAAAA
1 CTATTGCTTACCTTTAGCGGCGCTTCTTATAAAGCGCCGC-AAATTTTTTTCATTTTGAACAAAA
* *
26159378 CGACGCCGTTTTGCTATTCTAAAATTTTTTTATTTTTTTTATAAACTGATTTATTTTTTGCGGCG
65 CGACGCCGTTTTGCTATTCTAAAATTTTTTTAATTTTTTTATAAATTGATTTATTTTTTGCGGCG
26159443 TTTTTATAGAAAACGCCG
130 TTTTTATAGAAAACGCCG
26159461 CTATTGCTTACCTTTAGCGGCGCTTCTTATAAAGCGCCGCAAATTTTTTTCATTTTGAACAAAAC
1 CTATTGCTTACCTTTAGCGGCGCTTCTTATAAAGCGCCGCAAATTTTTTTCATTTTGAACAAAAC
*
26159526 GACGCCGTTTTGCTATTCTAAAATTTTTTTATTTTTTTTATAAATTGATTTATTTTTTGCGGCGT
66 GACGCCGTTTTGCTATTCTAAAATTTTTTTAATTTTTTTATAAATTGATTTATTTTTTGCGGCGT
*
26159591 TTTTATAGAAAACGCAG
131 TTTTATAGAAAACGCCG
26159608 CTATTGCTTACCTTTAGCGGCGCTTCTTATAAAGCGCCGCAAATTTTTTTCATTTTGAACAAAAC
1 CTATTGCTTACCTTTAGCGGCGCTTCTTATAAAGCGCCGCAAATTTTTTTCATTTTGAACAAAAC
*
26159673 GACGCCGTTTTGCTATTCTAAAA-ATTTTTAATTTTTTTATAAATTGATTTATTTTTTGCGGCGT
66 GACGCCGTTTTGCTATTCTAAAATTTTTTTAATTTTTTTATAAATTGATTTATTTTTTGCGGCGT
26159737 TTTTATAGAAAACGCCG
131 TTTTATAGAAAACGCCG
* * *
26159754 CTATTGCTTACCTTTAGCGGCGTTTCTTATAAAGCGTCGCAAAATTTTTTCATTTTGAACAAAAC
1 CTATTGCTTACCTTTAGCGGCGCTTCTTATAAAGCGCCGCAAATTTTTTTCATTTTGAACAAAAC
* * * *
26159819 GACGCCGTTTTGCTATTAT-AATTTTTTTTAATTTTTTTATAAGTTGATTTATTTTTTGTGGCGT
66 GACGCCGTTTTGCTATTCTAAAATTTTTTTAATTTTTTTATAAATTGATTTATTTTTTGCGGCGT
* *
26159883 TTTTGTAAAAAACGCCG
131 TTTTATAGAAAACGCCG
26159900 CTATT
1 CTATT
26159905 TCATTTTGAA
Statistics
Matches: 426, Mismatches: 16, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
145 2 0.00
146 203 0.48
147 221 0.52
ACGTcount: A:0.25, C:0.16, G:0.14, T:0.44
Consensus pattern (147 bp):
CTATTGCTTACCTTTAGCGGCGCTTCTTATAAAGCGCCGCAAATTTTTTTCATTTTGAACAAAAC
GACGCCGTTTTGCTATTCTAAAATTTTTTTAATTTTTTTATAAATTGATTTATTTTTTGCGGCGT
TTTTATAGAAAACGCCG
Found at i:26159855 original size:293 final size:293
Alignment explanation
Indices: 26159314--26159904 Score: 1008
Period size: 293 Copynumber: 2.0 Consensus size: 293
26159304 GCGGCGTTTT
*
26159314 CTATTGCTTACCTTTAGCGGCGCTTCTTATAAAGCGCTGCAAAATTTTTTTATTTTGAACAAAAC
1 CTATTGCTTACCTTTAGCGGCGCTTCTTATAAAGCGCCGCAAAATTTTTTTATTTTGAACAAAAC
* *
26159379 GACGCCGTTTTGCTATTCTAAAATTTTTTTATTTTTTTTATAAACTGATTTATTTTTTGCGGCGT
66 GACGCCGTTTTGCTATTCTAAAATATTTTTAATTTTTTTATAAACTGATTTATTTTTTGCGGCGT
*
26159444 TTTTATAGAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTCTTATAAAGCGCCGCAAATTTTT
131 TTTTATAGAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTCTTATAAAGCGCCGCAAAATTTT
*
26159509 TTCATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAAATTTTTTTATTTTTTTTATAAATTGA
196 TTCATTTTGAACAAAACGACGCCGTTTTGCTATTATAAAATTTTTTTA-TTTTTTTATAAATTGA
*
26159574 TTTATTTTTTGCGGCGTTTTTATAGAAAACGCAG
260 TTTATTTTTTGCGGCGTTTTTATAAAAAACGCAG
26159608 CTATTGCTTACCTTTAGCGGCGCTTCTTATAAAGCGCCGC-AAATTTTTTTCATTTTGAACAAAA
1 CTATTGCTTACCTTTAGCGGCGCTTCTTATAAAGCGCCGCAAAATTTTTTT-ATTTTGAACAAAA
*
26159672 CGACGCCGTTTTGCTATTCTAAAA-ATTTTTAATTTTTTTATAAATTGATTTATTTTTTGCGGCG
65 CGACGCCGTTTTGCTATTCTAAAATATTTTTAATTTTTTTATAAACTGATTTATTTTTTGCGGCG
* *
26159736 TTTTTATAGAAAACGCCGCTATTGCTTACCTTTAGCGGCGTTTCTTATAAAGCGTCGCAAAATTT
130 TTTTTATAGAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTCTTATAAAGCGCCGCAAAATTT
* *
26159801 TTTCATTTTGAACAAAACGACGCCGTTTTGCTATTAT-AATTTTTTTTAATTTTTTTATAAGTTG
195 TTTCATTTTGAACAAAACGACGCCGTTTTGCTATTATAAAATTTTTTT-ATTTTTTTATAAATTG
* * *
26159865 ATTTATTTTTTGTGGCGTTTTTGTAAAAAACGCCG
259 ATTTATTTTTTGCGGCGTTTTTATAAAAAACGCAG
26159900 CTATT
1 CTATT
26159905 TCATTTTGAA
Statistics
Matches: 281, Mismatches: 14, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
292 59 0.21
293 146 0.52
294 76 0.27
ACGTcount: A:0.25, C:0.16, G:0.14, T:0.44
Consensus pattern (293 bp):
CTATTGCTTACCTTTAGCGGCGCTTCTTATAAAGCGCCGCAAAATTTTTTTATTTTGAACAAAAC
GACGCCGTTTTGCTATTCTAAAATATTTTTAATTTTTTTATAAACTGATTTATTTTTTGCGGCGT
TTTTATAGAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTCTTATAAAGCGCCGCAAAATTTT
TTCATTTTGAACAAAACGACGCCGTTTTGCTATTATAAAATTTTTTTATTTTTTTATAAATTGAT
TTATTTTTTGCGGCGTTTTTATAAAAAACGCAG
Found at i:26160576 original size:14 final size:14
Alignment explanation
Indices: 26160557--26160590 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
26160547 AACCTTAAAT
26160557 CCCTAAC-TCTTAAC
1 CCCTAACATC-TAAC
26160571 CCCTAACATCTAAC
1 CCCTAACATCTAAC
26160585 CCCTAA
1 CCCTAA
26160591 ACCTTAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 17 0.89
15 2 0.11
ACGTcount: A:0.32, C:0.44, G:0.00, T:0.24
Consensus pattern (14 bp):
CCCTAACATCTAAC
Found at i:26160606 original size:21 final size:21
Alignment explanation
Indices: 26160543--26160614 Score: 65
Period size: 21 Copynumber: 3.4 Consensus size: 21
26160533 CCCCTGAATT
* *
26160543 CCTAAACCTTAAATCCCTAACT
1 CCTAAACCTTAAATCTC-AACC
* * *
26160565 CTTAACCCCTAACATCT-AACC
1 CCTAAACCTTAA-ATCTCAACC
26160586 CCTAAACCTTAAATCTCAACC
1 CCTAAACCTTAAATCTCAACC
*
26160607 CTTAAACC
1 CCTAAACC
26160615 ATAATCCTTA
Statistics
Matches: 39, Mismatches: 9, Indels: 5
0.74 0.17 0.09
Matches are distributed among these distances:
20 4 0.10
21 23 0.59
22 9 0.23
23 3 0.08
ACGTcount: A:0.36, C:0.39, G:0.00, T:0.25
Consensus pattern (21 bp):
CCTAAACCTTAAATCTCAACC
Found at i:26161378 original size:114 final size:113
Alignment explanation
Indices: 26161172--26161614 Score: 558
Period size: 114 Copynumber: 3.9 Consensus size: 113
26161162 TAAAATATTT
* * *
26161172 TTAGCGGCACTTTTCAAAAAACGCCGCTAAATCCTCGAAAGCTCAAAAAAC-AGCGTCGTTGGGC
1 TTAGCGGCAC-TTTCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGA-CGTCGTTGGGC
*
26161236 TTAGGTTTTTTTGCGGCGCTTT-TCCAAAAACGCCGTTAAAGCCCTGGGCA
64 TTAGGTTTTTTTGCGGCGCTTTCT-CAAAAACGCCGCTAAAGCCCTGGGCA
*
26161286 TTAGCGGCACTTTACCAAAAACGCCGCTAAATCCCTGAAAGCTCAGAAAAC-AGCGTCGTTGGGC
1 TTAGCGGCACTTT-CCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGA-CGTCGTTGGGC
* *
26161350 TTAGGTTTTTTTGCGGCGCTTTATCAAAAACGCCGCTAAAGCCCTAGGCA
64 TTAGGTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGGGCA
* * * *
26161400 TTAGCGGCGC-TTCCTTAAAAACGTCGCTAAATCCCCGAAAGCTTA-AAAACGACGTCGTTAGGC
1 TTAGCGGCACTTTCC--AAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGACGTCGTTGGGC
* * * *
26161463 TTAGGTTTTTTTGCGGTGCTTTCCCAAAAATGCCGCTAAAGCCCTGAGCA
64 TTAGGTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGGGCA
* * * * *
26161513 TTAGCGGCGCTTTCTTATAAACGCCTCTAAATCCCCGAAAGCT-TGAGAAACGACGTCGTTGGGC
1 TTAGCGGCACTTTC-CAAAAACGCCGCTAAATCCCCGAAAGCTCAGA-AAACGACGTCGTTGGGC
* *
26161577 TTAGG-TTTTTTGCGGCGCTTTCTCAAAAATGTCGCTAA
64 TTAGGTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAA
26161615 TGCTTATTTT
Statistics
Matches: 294, Mismatches: 26, Indels: 19
0.87 0.08 0.06
Matches are distributed among these distances:
112 2 0.01
113 129 0.44
114 162 0.55
115 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26
Consensus pattern (113 bp):
TTAGCGGCACTTTCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGACGTCGTTGGGCTT
AGGTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGGGCA
Found at i:26161572 original size:227 final size:227
Alignment explanation
Indices: 26161188--26161614 Score: 612
Period size: 227 Copynumber: 1.9 Consensus size: 227
26161178 GCACTTTTCA
* *
26161188 AAAAACGCCGCTAAATCCTCGAAAGCTCAAAAAACAGCGTCGTTGGGCTTAGGTTTTTTTGCGGC
1 AAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACAGCGTCGTTAGGCTTAGGTTTTTTTGCGGC
* * *
26161253 GCTTTTCCAAAAACGCCGTTAAAGCCCTGGGCATTAGCGGCACTTTACCAAAAACGCCGCTAAAT
66 GCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCACTTTACCAAAAACGCCGCTAAAT
*
26161318 CCCTGAAAGCTCAGAAAACAGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTATCAAAAACGC
131 CCCCGAAAGCTCAGAAAACAGCGTCGTTGGGCTTAGG-TTTTTTGCGGCGCTTTATCAAAAACGC
26161383 CGCTAAAGCCCTAGGCATTAGCGGCGCTTCCTT
195 CGCTAAAGCCCTAGGCATTAGCGGCGCTTCCTT
* *
26161416 AAAAACGTCGCTAAATCCCCGAAAGCT-TAAAAAC-GACGTCGTTAGGCTTAGGTTTTTTTGCGG
1 AAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACAG-CGTCGTTAGGCTTAGGTTTTTTTGCGG
* * * * * *
26161479 TGCTTTCCCAAAAATGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTT-CTTATAAACGCCTCTAA
65 CGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCACTTTAC-CAAAAACGCCGCTAA
* *
26161543 ATCCCCGAAAGCT-TGAGAAAC-GACGTCGTTGGGCTTAGGTTTTTTGCGGCGCTTTCTCAAAAA
129 ATCCCCGAAAGCTCAGA-AAACAG-CGTCGTTGGGCTTAGGTTTTTTGCGGCGCTTTATCAAAAA
* *
26161606 TGTCGCTAA
192 CGCCGCTAA
26161615 TGCTTATTTT
Statistics
Matches: 177, Mismatches: 18, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
226 35 0.20
227 117 0.66
228 25 0.14
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (227 bp):
AAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACAGCGTCGTTAGGCTTAGGTTTTTTTGCGGC
GCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCACTTTACCAAAAACGCCGCTAAAT
CCCCGAAAGCTCAGAAAACAGCGTCGTTGGGCTTAGGTTTTTTGCGGCGCTTTATCAAAAACGCC
GCTAAAGCCCTAGGCATTAGCGGCGCTTCCTT
Found at i:26161700 original size:12 final size:12
Alignment explanation
Indices: 26161683--26161708 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
26161673 TTTTTTATCC
26161683 AAACGCCGCTAA
1 AAACGCCGCTAA
26161695 AAACGCCGCTAA
1 AAACGCCGCTAA
26161707 AA
1 AA
26161709 GCCTATTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:26163939 original size:13 final size:14
Alignment explanation
Indices: 26163918--26163954 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
26163908 TCCAAGTAAG
26163918 ATAAAATAATTAAA
1 ATAAAATAATTAAA
*
26163932 AT-AAATAACTAAA
1 ATAAAATAATTAAA
26163945 ATAAAATAAT
1 ATAAAATAAT
26163955 AAATCAAAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
13 12 0.60
14 8 0.40
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (14 bp):
ATAAAATAATTAAA
Found at i:26171286 original size:18 final size:21
Alignment explanation
Indices: 26171263--26171307 Score: 62
Period size: 18 Copynumber: 2.3 Consensus size: 21
26171253 TAATTAAATT
26171263 ATATTTTT-TTTAT-TT-TTA
1 ATATTTTTATTTATCTTATTA
26171281 ATATTTTTATTTATCTTATTA
1 ATATTTTTATTTATCTTATTA
26171302 A-ATTTT
1 ATATTTT
26171308 ATTAAAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.33
19 5 0.21
20 7 0.29
21 4 0.17
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (21 bp):
ATATTTTTATTTATCTTATTA
Found at i:26173708 original size:49 final size:49
Alignment explanation
Indices: 26173651--26173750 Score: 164
Period size: 49 Copynumber: 2.0 Consensus size: 49
26173641 GTGTTATAAG
* * *
26173651 TTTATAAAGTGTTGAGCTTTTGATTCATGATATTGAACTTAATTTTAAT
1 TTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTTTAAT
*
26173700 TTTATAAAGTGTTCCCCTTTTGATTCATGATATTAAACTTAATTTTAAT
1 TTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTTTAAT
26173749 TT
1 TT
26173751 GTTTTTTTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.30, C:0.09, G:0.11, T:0.50
Consensus pattern (49 bp):
TTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTTTAAT
Found at i:26175268 original size:120 final size:120
Alignment explanation
Indices: 26175144--26175377 Score: 432
Period size: 120 Copynumber: 1.9 Consensus size: 120
26175134 AGATTAGAAT
* *
26175144 TTATATTTTATAGTATTATATATTATAATTTTAGTAAATTCATATAAGACTATTTAATATTAAGA
1 TTATATTTTATAGTATTATATATTATAATTATAGTAAATTCATATAAGAATATTTAATATTAAGA
*
26175209 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAGA
66 ATTTTATTAAATTATATATTTTTATTAAAATATATTTAATAATAATTATTTTAGA
*
26175264 TTATATTTTATAGTATTATATATTATGATTATAGTAAATTCATATAAGAATATTTAATATTAAGA
1 TTATATTTTATAGTATTATATATTATAATTATAGTAAATTCATATAAGAATATTTAATATTAAGA
26175329 ATTTTATTAAATTATATATTTTTATTAAAATATATTTAATAATAATTAT
66 ATTTTATTAAATTATATATTTTTATTAAAATATATTTAATAATAATTAT
26175378 GTTAAAATAT
Statistics
Matches: 110, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
120 110 1.00
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (120 bp):
TTATATTTTATAGTATTATATATTATAATTATAGTAAATTCATATAAGAATATTTAATATTAAGA
ATTTTATTAAATTATATATTTTTATTAAAATATATTTAATAATAATTATTTTAGA
Found at i:26175363 original size:16 final size:17
Alignment explanation
Indices: 26175330--26175365 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
26175320 ATATTAAGAA
26175330 TTTTATTAAATTATATAT
1 TTTTATTAAA-TATATAT
26175348 TTTTATTAAA-ATATAT
1 TTTTATTAAATATATAT
26175364 TT
1 TT
26175366 AATAATAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
18 10 0.56
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TTTTATTAAATATATAT
Found at i:26176129 original size:29 final size:28
Alignment explanation
Indices: 26176089--26176182 Score: 78
Period size: 28 Copynumber: 3.5 Consensus size: 28
26176079 AAAAATTATT
*
26176089 TTTTA-TAAATATTAAATTATTTATATAA
1 TTTTATTATATATT-AATTATTTATATAA
26176117 TTTTATTATATATTATATT-TTTA-A-AA
1 TTTTATTATATATTA-ATTATTTATATAA
*
26176143 TTTGTATT-T-T-CT-ATTATTTATATAA
1 TTT-TATTATATATTAATTATTTATATAA
*
26176168 TTTTATTGTATATTA
1 TTTTATTATATATTA
26176183 TTTGTATAAT
Statistics
Matches: 53, Mismatches: 3, Indels: 20
0.70 0.04 0.26
Matches are distributed among these distances:
22 3 0.06
23 4 0.08
24 6 0.11
25 7 0.13
26 7 0.13
27 6 0.11
28 10 0.19
29 10 0.19
ACGTcount: A:0.36, C:0.01, G:0.02, T:0.61
Consensus pattern (28 bp):
TTTTATTATATATTAATTATTTATATAA
Found at i:26176185 original size:15 final size:14
Alignment explanation
Indices: 26176105--26176185 Score: 57
Period size: 15 Copynumber: 6.1 Consensus size: 14
26176095 AAATATTAAA
26176105 TTATTTATATAATT
1 TTATTTATATAATT
26176119 TTA-TTATAT-ATT
1 TTATTTATATAATT
* * *
26176131 ATATTTTTAAAATT
1 TTATTTATATAATT
*
26176145 TGTATTT-TCT-A--
1 T-TATTTATATAATT
26176156 TTATTTATATAATT
1 TTATTTATATAATT
*
26176170 TTATTGTATATTATT
1 TTATT-TATATAATT
26176185 T
1 T
26176186 GTATAATTTT
Statistics
Matches: 51, Mismatches: 8, Indels: 15
0.69 0.11 0.20
Matches are distributed among these distances:
10 5 0.10
11 3 0.06
12 6 0.12
13 11 0.22
14 12 0.24
15 14 0.27
ACGTcount: A:0.32, C:0.01, G:0.02, T:0.64
Consensus pattern (14 bp):
TTATTTATATAATT
Found at i:26176199 original size:24 final size:24
Alignment explanation
Indices: 26176104--26176199 Score: 111
Period size: 24 Copynumber: 3.9 Consensus size: 24
26176094 TAAATATTAA
*
26176104 ATTATTTATATAATTTTATTATAT
1 ATTATTTATATAATTTTATTGTAT
* * * *
26176128 ATTATATTTTTAAAATTTGTATTTTCT
1 A-T-TATTTATATAATTT-TATTGTAT
26176155 ATTATTTATATAATTTTATTGTAT
1 ATTATTTATATAATTTTATTGTAT
*
26176179 ATTATTTGTATAATTTTATTG
1 ATTATTTATATAATTTTATTG
26176200 CATTTTCCGT
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
24 27 0.45
25 13 0.22
26 13 0.22
27 7 0.12
ACGTcount: A:0.32, C:0.01, G:0.04, T:0.62
Consensus pattern (24 bp):
ATTATTTATATAATTTTATTGTAT
Found at i:26178615 original size:4 final size:4
Alignment explanation
Indices: 26178606--26178636 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
26178596 GTAAGTTGAT
26178606 ATCC ATCC ATCC ATCC ATCC ATCC ATCC ATC
1 ATCC ATCC ATCC ATCC ATCC ATCC ATCC ATC
26178637 AATACGGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.26, C:0.48, G:0.00, T:0.26
Consensus pattern (4 bp):
ATCC
Found at i:26182522 original size:20 final size:20
Alignment explanation
Indices: 26182488--26182529 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
26182478 AACTATTTAA
** *
26182488 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
26182508 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
26182528 AT
1 AT
26182530 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:26183486 original size:21 final size:22
Alignment explanation
Indices: 26183441--26183495 Score: 62
Period size: 21 Copynumber: 2.5 Consensus size: 22
26183431 TCCTTCCTTC
*
26183441 ATTTTAT-AATATTATTAGATT
1 ATTTTATAAATATTATTAGATA
26183462 ATTTTATAAAGTATTATTA-A-A
1 ATTTTATAAA-TATTATTAGATA
26183483 ATTTCTATAAATA
1 ATTT-TATAAATA
26183496 GAAATGAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
21 13 0.43
22 9 0.30
23 8 0.27
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.51
Consensus pattern (22 bp):
ATTTTATAAATATTATTAGATA
Found at i:26183549 original size:113 final size:113
Alignment explanation
Indices: 26183364--26183593 Score: 460
Period size: 113 Copynumber: 2.0 Consensus size: 113
26183354 ATGAAGAGAC
26183364 ATTAAAATTTCTATAAATAGAAATGAAATTTCATTTGGAAAATACACCAACAAATTCTAATATTC
1 ATTAAAATTTCTATAAATAGAAATGAAATTTCATTTGGAAAATACACCAACAAATTCTAATATTC
26183429 TTTCCTTCCTTCATTTTATAATATTATTAGATTATTTTATAAAGTATT
66 TTTCCTTCCTTCATTTTATAATATTATTAGATTATTTTATAAAGTATT
26183477 ATTAAAATTTCTATAAATAGAAATGAAATTTCATTTGGAAAATACACCAACAAATTCTAATATTC
1 ATTAAAATTTCTATAAATAGAAATGAAATTTCATTTGGAAAATACACCAACAAATTCTAATATTC
26183542 TTTCCTTCCTTCATTTTATAATATTATTAGATTATTTTATAAAGTATT
66 TTTCCTTCCTTCATTTTATAATATTATTAGATTATTTTATAAAGTATT
26183590 ATTA
1 ATTA
26183594 TAGAAATCCT
Statistics
Matches: 117, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
113 117 1.00
ACGTcount: A:0.40, C:0.11, G:0.05, T:0.43
Consensus pattern (113 bp):
ATTAAAATTTCTATAAATAGAAATGAAATTTCATTTGGAAAATACACCAACAAATTCTAATATTC
TTTCCTTCCTTCATTTTATAATATTATTAGATTATTTTATAAAGTATT
Found at i:26184526 original size:39 final size:38
Alignment explanation
Indices: 26184456--26184537 Score: 94
Period size: 38 Copynumber: 2.1 Consensus size: 38
26184446 ACAATTTTTC
*
26184456 AAAATTTTTAAAATGTTTTCAAAAAATAT-AAAATATAT
1 AAAATTTTTAAAATGTTTTCAAAAAACATAAAAAT-TAT
* * * *
26184494 AAAATTTTTTAGATTTTTTTAAAAATACATAAAAATTAT
1 AAAATTTTTAAAATGTTTTCAAAAA-ACATAAAAATTAT
26184533 AAAAT
1 AAAAT
26184538 ATTAAAAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
38 21 0.57
39 11 0.30
40 5 0.14
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (38 bp):
AAAATTTTTAAAATGTTTTCAAAAAACATAAAAATTAT
Found at i:26194297 original size:23 final size:21
Alignment explanation
Indices: 26194246--26194303 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
26194236 GTGGGGGTTT
*
26194246 ACACGCCCATGTGAAGGCCAC
1 ACACGCCCGTGTGAAGGCCAC
* *
26194267 ATATGCCCGTGTGAAGGCTACAC
1 ACACGCCCGTGTGAAGGC--CAC
26194290 ACACGCCCGTGTGA
1 ACACGCCCGTGTGA
26194304 GCAGTCCCAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 15 0.50
23 15 0.50
ACGTcount: A:0.26, C:0.33, G:0.26, T:0.16
Consensus pattern (21 bp):
ACACGCCCGTGTGAAGGCCAC
Found at i:26195032 original size:8 final size:8
Alignment explanation
Indices: 26195021--26195072 Score: 65
Period size: 8 Copynumber: 6.9 Consensus size: 8
26195011 AAACAAACAA
26195021 ATAAATAC
1 ATAAATAC
26195029 ATAAATAC
1 ATAAATAC
26195037 ATAAATAC
1 ATAAATAC
26195045 AT-AA-A-
1 ATAAATAC
*
26195050 ATAAAAAC
1 ATAAATAC
*
26195058 AAAAATAC
1 ATAAATAC
26195066 ATAAATA
1 ATAAATA
26195073 TCTAAAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
5 2 0.05
6 3 0.08
7 3 0.08
8 30 0.79
ACGTcount: A:0.69, C:0.10, G:0.00, T:0.21
Consensus pattern (8 bp):
ATAAATAC
Found at i:26195051 original size:29 final size:29
Alignment explanation
Indices: 26195019--26195084 Score: 98
Period size: 29 Copynumber: 2.3 Consensus size: 29
26195009 ACAAACAAAC
* *
26195019 AAATAAATACATAAATACATAAATA-CATA
1 AAATAAAAACAAAAATACATAAATATC-TA
26195048 AAATAAAAACAAAAATACATAAATATCTA
1 AAATAAAAACAAAAATACATAAATATCTA
26195077 AAATAAAA
1 AAATAAAA
26195085 TTATCCTACA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
29 33 0.97
30 1 0.03
ACGTcount: A:0.70, C:0.09, G:0.00, T:0.21
Consensus pattern (29 bp):
AAATAAAAACAAAAATACATAAATATCTA
Found at i:26195063 original size:21 final size:21
Alignment explanation
Indices: 26195029--26195070 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
26195019 AAATAAATAC
* *
26195029 ATAAATACATAAATACATAAA
1 ATAAAAACAAAAATACATAAA
26195050 ATAAAAACAAAAATACATAAA
1 ATAAAAACAAAAATACATAAA
26195071 TATCTAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.71, C:0.10, G:0.00, T:0.19
Consensus pattern (21 bp):
ATAAAAACAAAAATACATAAA
Found at i:26196618 original size:22 final size:22
Alignment explanation
Indices: 26196592--26196645 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 22
26196582 ATATTCAAAC
**
26196592 AATAACAACAAAATAGTAGTAA
1 AATAACAACAAAATAGTAACAA
* * * *
26196614 TATAATAACGAAATGGTAACAA
1 AATAACAACAAAATAGTAACAA
26196636 AATAACAACA
1 AATAACAACA
26196646 TAACAACAAC
Statistics
Matches: 23, Mismatches: 9, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.61, C:0.11, G:0.09, T:0.19
Consensus pattern (22 bp):
AATAACAACAAAATAGTAACAA
Found at i:26196645 original size:11 final size:11
Alignment explanation
Indices: 26196631--26196664 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
26196621 ACGAAATGGT
*
26196631 AACAAAATAAC
1 AACAAAACAAC
*
26196642 AACATAACAAC
1 AACAAAACAAC
26196653 AACAAAACAAC
1 AACAAAACAAC
26196664 A
1 A
26196665 GGGGAAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.71, C:0.24, G:0.00, T:0.06
Consensus pattern (11 bp):
AACAAAACAAC
Found at i:26197598 original size:43 final size:43
Alignment explanation
Indices: 26197533--26197702 Score: 184
Period size: 43 Copynumber: 4.0 Consensus size: 43
26197523 ATAAACGCCG
26197533 CATGACCTTTAGCGGCGCTTCTCCCACAAACGCCGCTAAAGGT
1 CATGACCTTTAGCGGCGCTTCTCCCACAAACGCCGCTAAAGGT
* *
26197576 CATAACCTTTAGCGGCGCTTCT-CCATCAAACGCCGCT-ATGGAT
1 CATGACCTTTAGCGGCGCTTCTCCCA-CAAACGCCGCTAAAGG-T
* * *
26197619 CATGACTTTTAGCGGCACTT-TCCCCACAAACGCCGCTAAAGGC
1 CATGACCTTTAGCGGCGCTTCT-CCCACAAACGCCGCTAAAGGT
** * * ***
26197662 CATGTTCTTTAGCAGCGCTTTTATAACAAACGCCGCTAAAG
1 CATGACCTTTAGCGGCGCTTCTCCCACAAACGCCGCTAAAG
26197703 AACATGGCTT
Statistics
Matches: 106, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
42 7 0.07
43 92 0.87
44 7 0.07
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (43 bp):
CATGACCTTTAGCGGCGCTTCTCCCACAAACGCCGCTAAAGGT
Found at i:26197680 original size:86 final size:86
Alignment explanation
Indices: 26197533--26197699 Score: 219
Period size: 86 Copynumber: 1.9 Consensus size: 86
26197523 ATAAACGCCG
* * *
26197533 CATGACCTTTAGCGGCGCTTCTCCCACAAACGCCGCTAAAGGTCATAACCTTTAGCGGCGCTTCT
1 CATGACCTTTAGCGGCACTTCTCCCACAAACGCCGCTAAAGGCCATAACCTTTAGCAGCGCTTCT
* *
26197598 CCATCAAACGCCGCTATGGAT
66 ACAACAAACGCCGCTATGGAT
* *** *
26197619 CATGACTTTTAGCGGCACTT-TCCCCACAAACGCCGCTAAAGGCCATGTTCTTTAGCAGCGCTTT
1 CATGACCTTTAGCGGCACTTCT-CCCACAAACGCCGCTAAAGGCCATAACCTTTAGCAGCGCTTC
*
26197683 TATAACAAACGCCGCTA
65 TACAACAAACGCCGCTA
26197700 AAGAACATGG
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
85 1 0.01
86 68 0.99
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.25
Consensus pattern (86 bp):
CATGACCTTTAGCGGCACTTCTCCCACAAACGCCGCTAAAGGCCATAACCTTTAGCAGCGCTTCT
ACAACAAACGCCGCTATGGAT
Found at i:26197716 original size:43 final size:43
Alignment explanation
Indices: 26197644--26197778 Score: 121
Period size: 43 Copynumber: 3.1 Consensus size: 43
26197634 CACTTTCCCC
** *
26197644 ACAAACGCCGCTAAAGGCCAT-GTTCTTTAGCAGCGCTTTTATA
1 ACAAACGCCGCTAAAGAACATGGCT-TTTAGCAGCGCTTTTATA
* * *
26197687 ACAAACGCCGCTAAAGAACATGGCTTTTAG-TGATGCTTTTCTA
1 ACAAACGCCGCTAAAGAACATGGCTTTTAGCAG-CGCTTTTATA
* ** * * *
26197730 ACAATCGCTACTAAAGAACATGGCTTTTAACAACGCTTTTTATC
1 ACAAACGCCGCTAAAGAACATGGCTTTTAGCAGCGC-TTTTATA
26197774 ACAAA
1 ACAAA
26197779 TGCTCTTTAG
Statistics
Matches: 72, Mismatches: 16, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
42 1 0.01
43 60 0.83
44 11 0.15
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.29
Consensus pattern (43 bp):
ACAAACGCCGCTAAAGAACATGGCTTTTAGCAGCGCTTTTATA
Found at i:26197864 original size:23 final size:24
Alignment explanation
Indices: 26197836--26197892 Score: 64
Period size: 23 Copynumber: 2.5 Consensus size: 24
26197826 CATTTAAAAA
* *
26197836 TATTAAATAT-TAAAATTAAACAT
1 TATTAAATATAAAAAATTAAACAG
**
26197859 TATT-AATATAAAAAATTAATTAG
1 TATTAAATATAAAAAATTAAACAG
26197882 TATTAAATATA
1 TATTAAATATA
26197893 TACTTTTAGT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
22 5 0.18
23 17 0.61
24 6 0.21
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (24 bp):
TATTAAATATAAAAAATTAAACAG
Found at i:26207113 original size:59 final size:58
Alignment explanation
Indices: 26207029--26207171 Score: 180
Period size: 59 Copynumber: 2.4 Consensus size: 58
26207019 TGGCTTGCAG
* *
26207029 TTGCGGTTGCTTTTAGTGCCCAAACAAATTCAATCCTTGACATGCTGGTTA-TTATGAC
1 TTGCGGTTACTTTTAGTGCCAAAACAAATTCAATCCTTGACATGCTGG-TAGTTATGAC
* * * * * *
26207087 TTGTGGTTTACTTTTAGTGGCAAAACAAATTTAATTCTTGACATGCTGGTAGTTGTGGC
1 TTGCGG-TTACTTTTAGTGCCAAAACAAATTCAATCCTTGACATGCTGGTAGTTATGAC
*
26207146 TTGCGGTTGCTTTTAGTGCCAAAACA
1 TTGCGGTTACTTTTAGTGCCAAAACA
26207172 TAGCAACTTT
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
58 25 0.35
59 47 0.65
ACGTcount: A:0.24, C:0.17, G:0.22, T:0.38
Consensus pattern (58 bp):
TTGCGGTTACTTTTAGTGCCAAAACAAATTCAATCCTTGACATGCTGGTAGTTATGAC
Found at i:26208270 original size:18 final size:17
Alignment explanation
Indices: 26208240--26208273 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
26208230 AATTTTAAGA
*
26208240 ATAAATGTTAAATTGAT
1 ATAAATGTAAAATTGAT
26208257 ATAATATGTAAAATTGA
1 ATAA-ATGTAAAATTGA
26208274 AGGTTAAGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (17 bp):
ATAAATGTAAAATTGAT
Found at i:26208471 original size:121 final size:121
Alignment explanation
Indices: 26208339--26208566 Score: 413
Period size: 121 Copynumber: 1.9 Consensus size: 121
26208329 TATTGTAGTA
* *
26208339 TTATATATTATGATTTTAGTAATTTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTAT
1 TTATATATTATGATTTTAATAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTAT
26208404 ATATTTTTATTAAATTATATTTAAT-AGTAATTATGTTAAAATTATATTTTATAGCG
66 ATATTTTTATTAAATTATATTTAATGA-TAATTATGTTAAAATTATATTTTATAGCG
*
26208460 TTATATATTATGATTTTAATAAATTCATATAAGAATATTTAATATTAATAATTTTATTAAATTAT
1 TTATATATTATGATTTTAATAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTAT
26208525 ATATTTTTATTAAATTATATTTAATGATAATTATGTTAAAAT
66 ATATTTTTATTAAATTATATTTAATGATAATTATGTTAAAAT
26208567 ATGATTAAAT
Statistics
Matches: 103, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
121 102 0.99
122 1 0.01
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.51
Consensus pattern (121 bp):
TTATATATTATGATTTTAATAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTAT
ATATTTTTATTAAATTATATTTAATGATAATTATGTTAAAATTATATTTTATAGCG
Found at i:26208532 original size:18 final size:18
Alignment explanation
Indices: 26208498--26208544 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
26208488 ATAAGAATAT
26208498 TTAATATTA-ATAATTTTA
1 TTAA-ATTATATAATTTTA
*
26208516 TTAAATTATATATTTTTA
1 TTAAATTATATAATTTTA
26208534 TTAAATTATAT
1 TTAAATTATAT
26208545 TTAATGATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 4 0.15
18 23 0.85
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TTAAATTATATAATTTTA
Found at i:26208789 original size:46 final size:44
Alignment explanation
Indices: 26208712--26208797 Score: 118
Period size: 46 Copynumber: 1.9 Consensus size: 44
26208702 TATTCCATTC
* *
26208712 AACCAAACACAAGAATACTATTACGCCTCTATTCCATTACAGCG
1 AACCAAACAAAAGAATACTATTACGCATCTATTCCATTACAGCG
* *
26208756 AACCAAACAAAAAGATTACCTATTACGTATCTATTCCATTAC
1 AACCAAAC-AAAAGAATA-CTATTACGCATCTATTCCATTAC
26208798 GCCTCTATTC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
44 8 0.22
45 7 0.19
46 21 0.58
ACGTcount: A:0.41, C:0.27, G:0.07, T:0.26
Consensus pattern (44 bp):
AACCAAACAAAAGAATACTATTACGCATCTATTCCATTACAGCG
Found at i:26208798 original size:16 final size:15
Alignment explanation
Indices: 26208777--26208830 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 15
26208767 AAGATTACCT
26208777 ATTACGTATCTATTCC
1 ATTACGT-TCTATTCC
*
26208793 ATTACGCCTCTATTCC
1 ATTACG-TTCTATTCC
26208809 ATTACGCTTCTATTCC
1 ATTACG-TTCTATTCC
26208825 ATTACG
1 ATTACG
26208831 CCTCTATCCA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.22, C:0.30, G:0.07, T:0.41
Consensus pattern (15 bp):
ATTACGTTCTATTCC
Found at i:26208813 original size:32 final size:31
Alignment explanation
Indices: 26208777--26208842 Score: 107
Period size: 32 Copynumber: 2.1 Consensus size: 31
26208767 AAGATTACCT
26208777 ATTACG-TATCTATTCCATTACGCCTCTATTCC
1 ATTACGCT-TCTATTCCATTACGCCTCTA-TCC
26208809 ATTACGCTTCTATTCCATTACGCCTCTATCC
1 ATTACGCTTCTATTCCATTACGCCTCTATCC
26208840 ATT
1 ATT
26208843 GCAGCGAACC
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
31 6 0.18
32 26 0.79
33 1 0.03
ACGTcount: A:0.21, C:0.32, G:0.06, T:0.41
Consensus pattern (31 bp):
ATTACGCTTCTATTCCATTACGCCTCTATCC
Found at i:26208831 original size:16 final size:16
Alignment explanation
Indices: 26208785--26208842 Score: 100
Period size: 16 Copynumber: 3.7 Consensus size: 16
26208775 CTATTACGTA
26208785 TCTATTCCATTACGCC
1 TCTATTCCATTACGCC
*
26208801 TCTATTCCATTACGCT
1 TCTATTCCATTACGCC
26208817 TCTATTCCATTACGCC
1 TCTATTCCATTACGCC
26208833 TCTA-TCCATT
1 TCTATTCCATT
26208843 GCAGCGAACC
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
15 6 0.15
16 34 0.85
ACGTcount: A:0.19, C:0.34, G:0.05, T:0.41
Consensus pattern (16 bp):
TCTATTCCATTACGCC
Found at i:26211883 original size:50 final size:50
Alignment explanation
Indices: 26211808--26211907 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
26211798 GAAAACGGCG
26211808 CCGTTTTGAATGTTATTTAAAACCATTTTTCCTTTTTAAAAATCATTACA
1 CCGTTTTGAATGTTATTTAAAACCATTTTTCCTTTTTAAAAATCATTACA
26211858 CCGTTTTGAATGTTATTTAAAACCATTTTTCCTTTTTAAAAATCATTACA
1 CCGTTTTGAATGTTATTTAAAACCATTTTTCCTTTTTAAAAATCATTACA
26211908 ACCGAATAAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.32, C:0.16, G:0.06, T:0.46
Consensus pattern (50 bp):
CCGTTTTGAATGTTATTTAAAACCATTTTTCCTTTTTAAAAATCATTACA
Found at i:26214106 original size:14 final size:14
Alignment explanation
Indices: 26214072--26214118 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
26214062 CTAATTAATT
*
26214072 TAAACCCTAA-ACC
1 TAAACCCTAACCCC
26214085 TAAACCCTAACCCC
1 TAAACCCTAACCCC
* *
26214099 TAACCCCTAACCCT
1 TAAACCCTAACCCC
26214113 TAAACC
1 TAAACC
26214119 TTATTTAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
13 10 0.34
14 19 0.66
ACGTcount: A:0.38, C:0.45, G:0.00, T:0.17
Consensus pattern (14 bp):
TAAACCCTAACCCC
Found at i:26214121 original size:7 final size:7
Alignment explanation
Indices: 26214072--26214118 Score: 53
Period size: 7 Copynumber: 6.9 Consensus size: 7
26214062 CTAATTAATT
26214072 TAAACCC
1 TAAACCC
26214079 TAAA-CC
1 TAAACCC
26214085 TAAACCC
1 TAAACCC
*
26214092 TAACCCC
1 TAAACCC
*
26214099 TAACCCC
1 TAAACCC
26214106 T-AACCC
1 TAAACCC
26214112 TTAAACC
1 -TAAACC
26214119 TTATTTAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
6 10 0.29
7 21 0.60
8 4 0.11
ACGTcount: A:0.38, C:0.45, G:0.00, T:0.17
Consensus pattern (7 bp):
TAAACCC
Done.