Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 85 of 222
Found at i:26413366 original size:20 final size:20
Alignment explanation
Indices: 26413264--26413414 Score: 117
Period size: 20 Copynumber: 7.6 Consensus size: 20
26413254 TGCTTTCGTA
* *
26413264 CTCCTGTTAGCATTACGATG
1 CTCCTGTTAGCACTACGGTG
* *
26413284 CT-CTTTTAGCACTACAGTG
1 CTCCTGTTAGCACTACGGTG
* * *
26413303 CTCTTGATAGCAC-ACTTGTG
1 CTCCTGTTAGCACTAC-GGTG
* * * * *
26413323 CTACTGTTGGAACTATGGTT
1 CTCCTGTTAGCACTACGGTG
* *
26413343 CTCCTGTTACCACTTCGGTG
1 CTCCTGTTAGCACTACGGTG
** *
26413363 CTCCTACTAGCACTACAGTG
1 CTCCTGTTAGCACTACGGTG
26413383 CTCCTGTTAGCACTACGGTG
1 CTCCTGTTAGCACTACGGTG
*
26413403 CTCCTGATAGCA
1 CTCCTGTTAGCA
26413415 TATTTATGCT
Statistics
Matches: 96, Mismatches: 32, Indels: 6
0.72 0.24 0.04
Matches are distributed among these distances:
19 17 0.18
20 78 0.81
21 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.20, T:0.33
Consensus pattern (20 bp):
CTCCTGTTAGCACTACGGTG
Found at i:26413511 original size:20 final size:19
Alignment explanation
Indices: 26413467--26413514 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
26413457 TTGTGCCAGT
*
26413467 TATGCACTCTGGTGCCTTG
1 TATGCACTTTGGTGCCTTG
*
26413486 TTTGCACTTTGGTGCTCTTG
1 TATGCACTTTGGTGC-CTTG
26413506 TATGCACTT
1 TATGCACTT
26413515 CCATGCCTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 13 0.52
20 12 0.48
ACGTcount: A:0.10, C:0.23, G:0.23, T:0.44
Consensus pattern (19 bp):
TATGCACTTTGGTGCCTTG
Found at i:26413816 original size:60 final size:60
Alignment explanation
Indices: 26413702--26413834 Score: 160
Period size: 60 Copynumber: 2.2 Consensus size: 60
26413692 CTGTTAACAT
* * *
26413702 TACGGTGCTCCTGTTAGCACTACAGTGCTCTTAATAGCACACTCATGCTACTGTTGGAAC
1 TACGGTGCTCCTGTTACCACTACAGTGCTCCTAATAGCACACTCATGCTACTGTTAGAAC
* * * * * * *
26413762 TATGGTTCTCCTGTTACCACTACGGTGCTCCTACTAGCAC-TTCAGTGCTCCTGTTAGCAC
1 TACGGTGCTCCTGTTACCACTACAGTGCTCCTAATAGCACACTCA-TGCTACTGTTAGAAC
26413822 TACGGTGCTCCTG
1 TACGGTGCTCCTG
26413835 ATAGCATATT
Statistics
Matches: 60, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
59 3 0.05
60 57 0.95
ACGTcount: A:0.19, C:0.29, G:0.20, T:0.32
Consensus pattern (60 bp):
TACGGTGCTCCTGTTACCACTACAGTGCTCCTAATAGCACACTCATGCTACTGTTAGAAC
Found at i:26413839 original size:20 final size:20
Alignment explanation
Indices: 26413689--26413840 Score: 117
Period size: 20 Copynumber: 7.6 Consensus size: 20
26413679 TGCTTTCGTA
* *
26413689 CTCCTGTTAACATTACGGTG
1 CTCCTGTTAGCACTACGGTG
*
26413709 CTCCTGTTAGCACTACAGTG
1 CTCCTGTTAGCACTACGGTG
* ** **
26413729 CTCTTAATAGCAC-ACTCATG
1 CTCCTGTTAGCACTAC-GGTG
* * * * *
26413749 CTACTGTTGGAACTATGGTT
1 CTCCTGTTAGCACTACGGTG
*
26413769 CTCCTGTTACCACTACGGTG
1 CTCCTGTTAGCACTACGGTG
** * *
26413789 CTCCTACTAGCACTTCAGTG
1 CTCCTGTTAGCACTACGGTG
26413809 CTCCTGTTAGCACTACGGTG
1 CTCCTGTTAGCACTACGGTG
*
26413829 CTCCTGATAGCA
1 CTCCTGTTAGCA
26413841 TATTTATACT
Statistics
Matches: 96, Mismatches: 34, Indels: 4
0.72 0.25 0.03
Matches are distributed among these distances:
19 2 0.02
20 93 0.97
21 1 0.01
ACGTcount: A:0.20, C:0.29, G:0.19, T:0.32
Consensus pattern (20 bp):
CTCCTGTTAGCACTACGGTG
Found at i:26417331 original size:21 final size:21
Alignment explanation
Indices: 26417307--26417347 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
26417297 CCATTTTAGG
*
26417307 ATTTTAAATTAGTTCTATTTT
1 ATTTTAAAATAGTTCTATTTT
*
26417328 ATTTTAAAATAGTTTTATTT
1 ATTTTAAAATAGTTCTATTT
26417348 CTTGTTCTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (21 bp):
ATTTTAAAATAGTTCTATTTT
Found at i:26425225 original size:17 final size:17
Alignment explanation
Indices: 26425203--26425252 Score: 82
Period size: 17 Copynumber: 2.9 Consensus size: 17
26425193 TCTCAGATTT
26425203 TGATACCCATATCTTTC
1 TGATACCCATATCTTTC
**
26425220 TGATACTTATATCTTTC
1 TGATACCCATATCTTTC
26425237 TGATACCCATATCTTT
1 TGATACCCATATCTTT
26425253 GACTTTCTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.24, C:0.24, G:0.06, T:0.46
Consensus pattern (17 bp):
TGATACCCATATCTTTC
Found at i:26428793 original size:17 final size:17
Alignment explanation
Indices: 26428771--26428820 Score: 82
Period size: 17 Copynumber: 2.9 Consensus size: 17
26428761 TCTCAAATTT
26428771 TGATACCCATATCTTTC
1 TGATACCCATATCTTTC
* *
26428788 TGATACCTATATCCTTC
1 TGATACCCATATCTTTC
26428805 TGATACCCATATCTTT
1 TGATACCCATATCTTT
26428821 GATTTTCTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.24, C:0.28, G:0.06, T:0.42
Consensus pattern (17 bp):
TGATACCCATATCTTTC
Found at i:26432010 original size:6 final size:6
Alignment explanation
Indices: 26431999--26432049 Score: 52
Period size: 6 Copynumber: 8.5 Consensus size: 6
26431989 TCTTAGGAAA
* *
26431999 TTTATG TTTATG TTTATG TTTAGG TTTACTG -TTAT- TTTAGTT TTTATG
1 TTTATG TTTATG TTTATG TTTATG TTTA-TG TTTATG TTTA-TG TTTATG
26432047 TTT
1 TTT
26432050 TATTTTTCTT
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
5 4 0.11
6 29 0.76
7 5 0.13
ACGTcount: A:0.16, C:0.02, G:0.16, T:0.67
Consensus pattern (6 bp):
TTTATG
Found at i:26432025 original size:18 final size:17
Alignment explanation
Indices: 26431999--26432055 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 17
26431989 TCTTAGGAAA
*
26431999 TTTATGTTTATGTTTAT
1 TTTAGGTTTATGTTTAT
26432016 GTTTAGGTTTACTG-TTAT
1 -TTTAGGTTTA-TGTTTAT
*
26432034 TTTAGTTTTTATGTTTTAT
1 TTTAG-GTTTATG-TTTAT
26432053 TTT
1 TTT
26432056 TCTTGTCGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
17 7 0.21
18 17 0.52
19 9 0.27
ACGTcount: A:0.16, C:0.02, G:0.14, T:0.68
Consensus pattern (17 bp):
TTTAGGTTTATGTTTAT
Found at i:26436424 original size:50 final size:50
Alignment explanation
Indices: 26436317--26436563 Score: 210
Period size: 50 Copynumber: 4.8 Consensus size: 50
26436307 ATTTGGGTAA
* *
26436317 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATG
*
26436373 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * *
26436423 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATCGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * * * * * * * *
26436473 AGAACTCCCATGCAAGACCATATCTAGGATATGACATTTGTA--GTACAAG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATG
* ** * *
26436522 AAACATCTCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
26436564 TGTTATTATC
Statistics
Matches: 156, Mismatches: 34, Indels: 9
0.78 0.17 0.05
Matches are distributed among these distances:
48 1 0.01
49 33 0.21
50 78 0.50
53 3 0.02
55 1 0.01
56 40 0.26
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:26440149 original size:51 final size:51
Alignment explanation
Indices: 26440018--26440213 Score: 191
Period size: 51 Copynumber: 3.9 Consensus size: 51
26440008 AGTGAAAGTG
* * * *
26440018 ATGGTAACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGGT-
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG-ATAGTA
* ** **
26440069 A-GGTCTCATGTGTAGTACTATGTATAGGCTACTATATGTACCGGATAGT-
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
* * * ** * *
26440118 TTCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATTGAATGGTA
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
* *
26440170 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGAACCG
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCG
26440214 AACATCATTT
Statistics
Matches: 116, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
49 4 0.03
50 37 0.32
51 74 0.64
52 1 0.01
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (51 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
Found at i:26440208 original size:26 final size:26
Alignment explanation
Indices: 26440128--26440208 Score: 64
Period size: 26 Copynumber: 3.2 Consensus size: 26
26440118 TTCGATCACG
26440128 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
* * *
26440154 CGTGTATTGA--ATG-GTAATGG-TCAC-A
1 TGTGTAGT-ACTATGTG-CA-GGCT-ACTA
26440179 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
26440205 TGTG
1 TGTG
26440209 AACCGAACAT
Statistics
Matches: 40, Mismatches: 6, Indels: 18
0.62 0.09 0.28
Matches are distributed among these distances:
24 2 0.05
25 16 0.40
26 20 0.50
27 2 0.05
ACGTcount: A:0.23, C:0.14, G:0.28, T:0.35
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAGGCTACTA
Found at i:26440266 original size:45 final size:45
Alignment explanation
Indices: 26440210--26440304 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 45
26440200 TACTATGTGA
* * *
26440210 ACCGAACATCATTTATTAGTAAAGTGGTTGTTATATGCTGAATCC
1 ACCGAACATCATTGATTAATAAAGTGGTTGCTATATGCTGAATCC
* * *
26440255 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
1 ACCGAACATCATTGATTAATAAAGTGGTTGCTATATGCTGAATCC
26440300 ACCGA
1 ACCGA
26440305 GTATCTATTA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAAGTGGTTGCTATATGCTGAATCC
Found at i:26445937 original size:19 final size:20
Alignment explanation
Indices: 26445897--26445938 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
26445887 TTTTGTGCGA
26445897 TTTTCTTTGTTCACTTACATT
1 TTTTCTTTGTTCACTTA-ATT
*
26445918 TTTTCTTTGTTCTCTT-ATT
1 TTTTCTTTGTTCACTTAATT
26445937 TT
1 TT
26445939 CTGGTTCTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 5 0.25
21 15 0.75
ACGTcount: A:0.10, C:0.17, G:0.05, T:0.69
Consensus pattern (20 bp):
TTTTCTTTGTTCACTTAATT
Found at i:26447776 original size:22 final size:24
Alignment explanation
Indices: 26447724--26447781 Score: 59
Period size: 22 Copynumber: 2.5 Consensus size: 24
26447714 TTTGAAATGT
*
26447724 TTAGAAACTAAATAATTGAAACAA
1 TTAGAAACTAAATAATTGAAAAAA
* *
26447748 -CATAAA-TAAATAATT-AAAAAA
1 TTAGAAACTAAATAATTGAAAAAA
*
26447769 TTAGAAATTAAAT
1 TTAGAAACTAAAT
26447782 TAGAAATTAA
Statistics
Matches: 27, Mismatches: 5, Indels: 5
0.73 0.14 0.14
Matches are distributed among these distances:
21 5 0.19
22 13 0.48
23 9 0.33
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (24 bp):
TTAGAAACTAAATAATTGAAAAAA
Found at i:26447781 original size:12 final size:12
Alignment explanation
Indices: 26447766--26447794 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
26447756 AATAATTAAA
26447766 AAATTAGAAATT
1 AAATTAGAAATT
26447778 AAATTAGAAATT
1 AAATTAGAAATT
26447790 AAATT
1 AAATT
26447795 CGGATTTTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (12 bp):
AAATTAGAAATT
Found at i:26455056 original size:22 final size:21
Alignment explanation
Indices: 26455029--26455069 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
26455019 AGTAGTACTG
*
26455029 TGTTATGCATATTTGATTATTC
1 TGTTATACATATTTG-TTATTC
*
26455051 TGTTATATATATTTGTTAT
1 TGTTATACATATTTGTTAT
26455070 CTATATGCGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.24, C:0.05, G:0.12, T:0.59
Consensus pattern (21 bp):
TGTTATACATATTTGTTATTC
Found at i:26459438 original size:20 final size:19
Alignment explanation
Indices: 26459348--26459441 Score: 71
Period size: 20 Copynumber: 4.7 Consensus size: 19
26459338 TACGGGATAT
* *
26459348 CACTTTGGTGCCCCTGTTAG
1 CACTTTGGTGCCTCTATT-G
* * *
26459368 CACTTTTGTGCCTCTGTTTC
1 CACTTTGGTGCCTCT-ATTG
*
26459388 CACTTTGGTGTCTCTGATTG
1 CACTTTGGTGCCTCT-ATTG
** *
26459408 CACAATCGTGCCTCTATCTG
1 CACTTTGGTGCCTCTAT-TG
26459428 CACTTTGGTGCCTC
1 CACTTTGGTGCCTC
26459442 AGTTACGCAT
Statistics
Matches: 57, Mismatches: 15, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
19 2 0.04
20 53 0.93
21 2 0.04
ACGTcount: A:0.11, C:0.30, G:0.20, T:0.39
Consensus pattern (19 bp):
CACTTTGGTGCCTCTATTG
Found at i:26460571 original size:25 final size:25
Alignment explanation
Indices: 26460530--26460590 Score: 104
Period size: 25 Copynumber: 2.4 Consensus size: 25
26460520 TTATAACACA
26460530 GGGCATAACATTCATTTTACCACATGG
1 GGGCAT-A-ATTCATTTTACCACATGG
26460557 GGGCATAATTCATTTTACCACATGG
1 GGGCATAATTCATTTTACCACATGG
26460582 GGGCATAAT
1 GGGCATAAT
26460591 AGTCATTTCA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
25 27 0.79
26 1 0.03
27 6 0.18
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.30
Consensus pattern (25 bp):
GGGCATAATTCATTTTACCACATGG
Found at i:26466603 original size:29 final size:29
Alignment explanation
Indices: 26466556--26466618 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
26466546 AATTCACGGC
*
26466556 AACTCAGTAATTTGCTAACTTGTGAGCAT
1 AACTCAGTAATTTGCTAACTTATGAGCAT
26466585 AACTCAGTAATTT-CTTAACTTATGAGCAT
1 AACTCAGTAATTTGC-TAACTTATGAGCAT
26466614 -ACTCA
1 AACTCA
26466619 CCTATCAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
28 6 0.19
29 26 0.81
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (29 bp):
AACTCAGTAATTTGCTAACTTATGAGCAT
Found at i:26466666 original size:13 final size:13
Alignment explanation
Indices: 26466650--26466677 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
26466640 CTTGACTATA
26466650 TCTCTATGTCAAT
1 TCTCTATGTCAAT
26466663 TCTCTATGTCAAT
1 TCTCTATGTCAAT
26466676 TC
1 TC
26466678 AACCGATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.25, G:0.07, T:0.46
Consensus pattern (13 bp):
TCTCTATGTCAAT
Found at i:26467864 original size:21 final size:22
Alignment explanation
Indices: 26467834--26467878 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
26467824 TATTTAACCC
*
26467834 AAAATAAATTGGATTA-AAATT
1 AAAATAAATTAGATTATAAATT
* *
26467855 AAAATTAATTATATTATAAATT
1 AAAATAAATTAGATTATAAATT
26467877 AA
1 AA
26467879 TACTCATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (22 bp):
AAAATAAATTAGATTATAAATT
Found at i:26470037 original size:3 final size:3
Alignment explanation
Indices: 26470029--26470084 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
26470019 CTCTGTGGGA
26470029 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
26470077 TCT TCT TC
1 TCT TCT TC
26470085 GTTGCTGGAG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:26471844 original size:30 final size:29
Alignment explanation
Indices: 26471787--26471845 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
26471777 TGCCTTTGAA
*
26471787 AATATTTACAAAAAGAAACATCTAATTTTT
1 AATATTTACAAAAAGAAACA-CAAATTTTT
26471817 AATATTTACAAAAAGAGCAAC-CAAATTTT
1 AATATTTACAAAAAGA--AACACAAATTTT
26471846 GAAAATAGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 23 0.88
32 3 0.12
ACGTcount: A:0.51, C:0.12, G:0.05, T:0.32
Consensus pattern (29 bp):
AATATTTACAAAAAGAAACACAAATTTTT
Found at i:26472175 original size:15 final size:15
Alignment explanation
Indices: 26472152--26472191 Score: 71
Period size: 15 Copynumber: 2.7 Consensus size: 15
26472142 AATGAACGAG
*
26472152 ATTTAATCCCGTTCA
1 ATTTTATCCCGTTCA
26472167 ATTTTATCCCGTTCA
1 ATTTTATCCCGTTCA
26472182 ATTTTATCCC
1 ATTTTATCCC
26472192 CCAATAATCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.23, C:0.28, G:0.05, T:0.45
Consensus pattern (15 bp):
ATTTTATCCCGTTCA
Found at i:26477614 original size:79 final size:78
Alignment explanation
Indices: 26477512--26477735 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 78
26477502 GCTCCTCGTT
* *
26477512 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
26477577 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
26477592 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
* *
26477655 AATTAGTATCTCTCA
64 AATTAGTAACTCGCA
* * * * *
26477670 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
26477734 GA
63 GA
26477736 CATCATTCAA
Statistics
Matches: 125, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
78 37 0.30
79 53 0.42
80 34 0.27
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:26477629 original size:39 final size:40
Alignment explanation
Indices: 26477512--26477735 Score: 266
Period size: 40 Copynumber: 5.7 Consensus size: 40
26477502 GCTCCTCGTT
* *
26477512 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
26477552 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
26477592 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
26477631 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCTCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
26477670 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
26477711 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26477736 CATCATTCAA
Statistics
Matches: 165, Mismatches: 11, Indels: 16
0.86 0.06 0.08
Matches are distributed among these distances:
38 2 0.01
39 72 0.44
40 75 0.45
41 16 0.10
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:26485672 original size:79 final size:78
Alignment explanation
Indices: 26485570--26485793 Score: 274
Period size: 79 Copynumber: 2.8 Consensus size: 78
26485560 GCTCCTCGTT
* *
26485570 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
26485635 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
26485650 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
26485713 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
26485728 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
26485792 GA
63 GA
26485794 CATCATTCAA
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
78 38 0.30
79 53 0.42
80 34 0.27
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:26485687 original size:39 final size:40
Alignment explanation
Indices: 26485570--26485793 Score: 275
Period size: 40 Copynumber: 5.7 Consensus size: 40
26485560 GCTCCTCGTT
* *
26485570 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
26485610 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
26485650 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
26485689 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
26485728 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
26485769 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26485794 CATCATTCAA
Statistics
Matches: 167, Mismatches: 9, Indels: 16
0.87 0.05 0.08
Matches are distributed among these distances:
38 2 0.01
39 73 0.44
40 75 0.45
41 17 0.10
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:26492682 original size:18 final size:17
Alignment explanation
Indices: 26492642--26492682 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 17
26492632 TAATAAAATT
26492642 TATATTTAAAATTTTAAA
1 TATA-TTAAAATTTTAAA
*
26492660 AATATTAAAATTTTAAA
1 TATATTAAAATTTTAAA
26492677 GTATAT
1 -TATAT
26492683 CAAATATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (17 bp):
TATATTAAAATTTTAAA
Found at i:26492760 original size:16 final size:16
Alignment explanation
Indices: 26492739--26492771 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
26492729 TTATATTTAA
26492739 TAATCTAAATTATTAT
1 TAATCTAAATTATTAT
26492755 TAATCTAAATTATTAT
1 TAATCTAAATTATTAT
26492771 T
1 T
26492772 TTAATATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (16 bp):
TAATCTAAATTATTAT
Found at i:26499744 original size:29 final size:29
Alignment explanation
Indices: 26499712--26499767 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
26499702 ATAAACATTA
* *
26499712 TTAAACTTTAATAAAAATATAAAAAATAT
1 TTAAAATTTAATAAAAATAGAAAAAATAT
*
26499741 TTAAAATTTATTAAAAATAGAAAAAAT
1 TTAAAATTTAATAAAAATAGAAAAAAT
26499768 CATAAAAATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (29 bp):
TTAAAATTTAATAAAAATAGAAAAAATAT
Found at i:26499775 original size:29 final size:29
Alignment explanation
Indices: 26499710--26499776 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
26499700 TTATAAACAT
* *
26499710 TATT-AAACTTTAATAAAAATATAAAAAA
1 TATTAAAAATTTAATAAAAATAGAAAAAA
* *
26499738 TATTTAAAATTTATTAAAAATAGAAAAAA
1 TATTAAAAATTTAATAAAAATAGAAAAAA
26499767 TCA-TAAAAAT
1 T-ATTAAAAAT
26499777 CATAAAAACA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
28 4 0.12
29 28 0.85
30 1 0.03
ACGTcount: A:0.63, C:0.03, G:0.01, T:0.33
Consensus pattern (29 bp):
TATTAAAAATTTAATAAAAATAGAAAAAA
Found at i:26500021 original size:20 final size:20
Alignment explanation
Indices: 26499968--26500021 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
26499958 TTGTTACAAT
*
26499968 AATTTTA-ATTTTTTTTACA
1 AATTTTATATTTTCTTTACA
26499987 AATTTTATA-TTTCTTTAC-
1 AATTTTATATTTTCTTTACA
*
26500005 ATTTTTATCATTTTCTT
1 AATTTTAT-ATTTTCTT
26500022 ATGACTTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
18 7 0.23
19 16 0.53
20 7 0.23
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.65
Consensus pattern (20 bp):
AATTTTATATTTTCTTTACA
Found at i:26500070 original size:30 final size:30
Alignment explanation
Indices: 26500035--26500142 Score: 94
Period size: 32 Copynumber: 3.5 Consensus size: 30
26500025 ACTTTATAAA
*
26500035 ATTTTATAATTTTTTTCTATATTTCTACAT
1 ATTTTATAATTTTTTTCTATATTTTTACAT
* * * *
26500065 ATTTTATAATTGTTTTTACGATTTTTTTATAAA
1 ATTTTATAATT-TTTTT-CTATATTTTTA-CAT
*
26500098 ATTTTAGAATTTTTTT-TATAATTTTTTAC-T
1 ATTTTATAATTTTTTTCTAT-A-TTTTTACAT
26500128 ATTTTTATAATTTTT
1 A-TTTTATAATTTTT
26500143 AATAAATTTT
Statistics
Matches: 61, Mismatches: 11, Indels: 11
0.73 0.13 0.13
Matches are distributed among these distances:
30 14 0.23
31 17 0.28
32 19 0.31
33 11 0.18
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.65
Consensus pattern (30 bp):
ATTTTATAATTTTTTTCTATATTTTTACAT
Found at i:26500102 original size:22 final size:22
Alignment explanation
Indices: 26500077--26500133 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
26500067 TTTATAATTG
26500077 TTTTTACGA-TTTTTTTATAAA
1 TTTTTACGATTTTTTTTATAAA
* *
26500098 ATTTTA-GAATTTTTTTTATAAT
1 TTTTTACG-ATTTTTTTTATAAA
*
26500120 TTTTTACTATTTTT
1 TTTTTACGATTTTT
26500134 ATAATTTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
20 1 0.03
21 6 0.21
22 22 0.76
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.67
Consensus pattern (22 bp):
TTTTTACGATTTTTTTTATAAA
Found at i:26500122 original size:9 final size:9
Alignment explanation
Indices: 26500110--26500208 Score: 55
Period size: 9 Copynumber: 10.8 Consensus size: 9
26500100 TTTAGAATTT
26500110 TTTTTATAA
1 TTTTTATAA
26500119 TTTTT-TACTA
1 TTTTTATA--A
26500129 TTTTTATAA
1 TTTTTATAA
26500138 TTTTTAATAAA
1 TTTTT-AT-AA
26500149 TTTTTA-ATA
1 TTTTTATA-A
26500158 TTTTT-T-A
1 TTTTTATAA
*
26500165 TTTTT-TAT
1 TTTTTATAA
26500173 TTTTTATTAAA
1 TTTTTA-T-AA
* *
26500184 ATTTAATAA
1 TTTTTATAA
*
26500193 ATTTTATAA
1 TTTTTATAA
*
26500202 ATTTTAT
1 TTTTTAT
26500209 TGATTTTCAT
Statistics
Matches: 74, Mismatches: 5, Indels: 22
0.73 0.05 0.22
Matches are distributed among these distances:
7 7 0.09
8 8 0.11
9 34 0.46
10 11 0.15
11 14 0.19
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.66
Consensus pattern (9 bp):
TTTTTATAA
Found at i:26500122 original size:10 final size:10
Alignment explanation
Indices: 26500109--26500165 Score: 57
Period size: 10 Copynumber: 5.8 Consensus size: 10
26500099 TTTTAGAATT
26500109 TTTTTTATAA
1 TTTTTTATAA
26500119 TTTTTTACT-A
1 TTTTTTA-TAA
26500129 -TTTTTATAA
1 TTTTTTATAA
*
26500138 TTTTTAATAA
1 TTTTTTATAA
*
26500148 ATTTTTA-ATA
1 TTTTTTATA-A
26500158 TTTTTTAT
1 TTTTTTAT
26500166 TTTTTATTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
8 1 0.03
9 8 0.21
10 28 0.74
11 1 0.03
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (10 bp):
TTTTTTATAA
Found at i:26500152 original size:29 final size:28
Alignment explanation
Indices: 26500109--26500171 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 28
26500099 TTTTAGAATT
* * *
26500109 TTTTTTATAATTTTTTACTATTTTTATAA
1 TTTTTAATAAATTTTTAATATTTTT-TAA
*
26500138 TTTTTAATAAATTTTTAATATTTTTTAT
1 TTTTTAATAAATTTTTAATATTTTTTAA
26500166 TTTTTA
1 TTTTTA
26500172 TTTTTTATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 8 0.27
29 22 0.73
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.70
Consensus pattern (28 bp):
TTTTTAATAAATTTTTAATATTTTTTAA
Found at i:26500152 original size:63 final size:63
Alignment explanation
Indices: 26500027--26500153 Score: 154
Period size: 63 Copynumber: 2.0 Consensus size: 63
26500017 TTCTTATGAC
* * *
26500027 TTTATAAAATTTTATAATTTTTTTCTATATTTCTACATATTTTATAATTGTTTTTACGATTTT
1 TTTATAAAATTTTAGAATTTTTTTCTATATTTCTACATATTTTATAATTGTTTATACAATTTT
*
26500090 TTTATAAAATTTTAGAATTTTTTT-TATAATTTTTTAC-TATTTTTATAATT-TTTAATA-AATT
1 TTTATAAAATTTTAGAATTTTTTTCTAT-A-TTTCTACATA-TTTTATAATTGTTT-ATACAATT
26500151 TT
62 TT
26500153 T
1 T
26500154 AATATTTTTT
Statistics
Matches: 56, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
62 3 0.05
63 35 0.62
64 18 0.32
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (63 bp):
TTTATAAAATTTTAGAATTTTTTTCTATATTTCTACATATTTTATAATTGTTTATACAATTTT
Found at i:26500175 original size:6 final size:7
Alignment explanation
Indices: 26500156--26500180 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
26500146 AAATTTTTAA
26500156 TATTTTT
1 TATTTTT
26500163 TATTTTT
1 TATTTTT
26500170 TATTTTT
1 TATTTTT
26500177 TATT
1 TATT
26500181 AAAATTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (7 bp):
TATTTTT
Found at i:26500189 original size:45 final size:48
Alignment explanation
Indices: 26500118--26500215 Score: 125
Period size: 45 Copynumber: 2.1 Consensus size: 48
26500108 TTTTTTTATA
**
26500118 ATTTTTTACTATTTTTATAATTTTTAATAAATTTT-TAATATTTT-TT-
1 ATTTTTTACTATTTTTATAAAATTTAATAAATTTTATAA-ATTTTATTG
26500164 ATTTTTTA-T-TTTTTATTAAAATTTAATAAATTTTATAAATTTTATTG
1 ATTTTTTACTATTTTTA-TAAAATTTAATAAATTTTATAAATTTTATTG
26500211 ATTTT
1 ATTTT
26500216 CATTCTTTTA
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
44 6 0.13
45 22 0.48
46 13 0.28
47 5 0.11
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.65
Consensus pattern (48 bp):
ATTTTTTACTATTTTTATAAAATTTAATAAATTTTATAAATTTTATTG
Found at i:26500486 original size:90 final size:87
Alignment explanation
Indices: 26500318--26500548 Score: 222
Period size: 90 Copynumber: 2.6 Consensus size: 87
26500308 GTCAAAGGGT
* * *
26500318 TTTTTTGATGCATTTT-GATAGTACAAGTATTCAATTGAGTGTAAAAAAAATCA-AGGGCTTAAT
1 TTTTTTGATGCATTTTAAAT-GTTCAAGTACTCAATTGAGTG-AAAAAAAA--AGAGGGCTTAAT
*
26500381 TGCTTGATTTGAAAAAGTTTGAGAGTCC
62 TGCTTGATTTGAAAAAGTTTAAG-GT-C
* * *
26500409 TTTTTT-ATGCATTTTAAATGTTCAAGTACTCAATTGAGTGCAAAAAAAAGGGGGTTTAATTGCT
1 TTTTTTGATGCATTTTAAATGTTCAAGTACTCAATTGAGTGAAAAAAAAAGAGGGCTTAATTGC-
** *
26500473 TTTTTTTTTAAAAAGTTTAAGGTC
65 -TTGATTTGAAAAAGTTTAAGGTC
*
26500497 TTTTTTGTTGCATTTTGAAA-GCTT-AAGTAC-CTAATTGAGTGAAAAAAAAAGA
1 TTTTTTGATGCATTTT-AAATG-TTCAAGTACTC-AATTGAGTGAAAAAAAAAGA
26500549 TAAAGGCTTA
Statistics
Matches: 119, Mismatches: 13, Indels: 18
0.79 0.09 0.12
Matches are distributed among these distances:
87 1 0.01
88 19 0.16
89 42 0.35
90 49 0.41
91 8 0.07
ACGTcount: A:0.34, C:0.08, G:0.18, T:0.39
Consensus pattern (87 bp):
TTTTTTGATGCATTTTAAATGTTCAAGTACTCAATTGAGTGAAAAAAAAAGAGGGCTTAATTGCT
TGATTTGAAAAAGTTTAAGGTC
Found at i:26500978 original size:1 final size:1
Alignment explanation
Indices: 26500972--26501009 Score: 58
Period size: 1 Copynumber: 38.0 Consensus size: 1
26500962 TACCTTTTCC
* *
26500972 TTTTTTTTTCTTTTTTTTTCTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
26501010 GAATTAATAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
1 33 1.00
ACGTcount: A:0.00, C:0.05, G:0.00, T:0.95
Consensus pattern (1 bp):
T
Found at i:26500984 original size:10 final size:10
Alignment explanation
Indices: 26500966--26501009 Score: 72
Period size: 10 Copynumber: 4.5 Consensus size: 10
26500956 TATTGTTACC
*
26500966 TTTTCCTTTT
1 TTTTTCTTTT
26500976 TTTTTCTTTT
1 TTTTTCTTTT
26500986 TTTTTCTTTT
1 TTTTTCTTTT
26500996 TTTTT-TTTT
1 TTTTTCTTTT
26501005 TTTTT
1 TTTTT
26501010 GAATTAATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
9 9 0.27
10 24 0.73
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (10 bp):
TTTTTCTTTT
Found at i:26503808 original size:2 final size:2
Alignment explanation
Indices: 26503801--26503855 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
26503791 TTAGTCATCA
26503801 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
26503843 AG AG AG AG AG AG A
1 AG AG AG AG AG AG A
26503856 TGTGTGTACA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:26505492 original size:16 final size:16
Alignment explanation
Indices: 26505471--26505522 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
26505461 TTTGGTTCGC
*
26505471 TGTATTGGATTAGAGA
1 TGTATTGGATTAGAGG
26505487 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
26505503 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
26505519 TGTA
1 TGTA
26505523 ATAGCAAATC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.31, C:0.00, G:0.35, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:26505569 original size:45 final size:44
Alignment explanation
Indices: 26505503--26505593 Score: 128
Period size: 45 Copynumber: 2.0 Consensus size: 44
26505493 GGATTAGAGG
*
26505503 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAG-AAATCAACTGTTTGGTTGAA
* ***
26505548 TGTAATGGAATAGAGGCGTAATAGTAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAA
26505592 TG
1 TG
26505594 GAATAGACGT
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
44 18 0.44
45 23 0.56
ACGTcount: A:0.32, C:0.05, G:0.29, T:0.34
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAA
Found at i:26505779 original size:18 final size:17
Alignment explanation
Indices: 26505757--26505791 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26505747 TTATTATTAA
*
26505757 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
26505775 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
26505792 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:26505850 original size:61 final size:61
Alignment explanation
Indices: 26505772--26506091 Score: 238
Period size: 61 Copynumber: 5.3 Consensus size: 61
26505762 TTTTAATTAA
* *
26505772 AATATATAAT-TTAATAAAATTCTTAATAATTAATATTCTGATATGAATTTACTCAAATAAT
1 AATATATAATACT-ATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATAAT
* * * * * * *
26505833 AATATATGATACTATAAAA-TATAAATTAACATAATTATTATTAAAT--ATATTA-T-AATTAA-
1 AATATATAATACTATAAAATTCTTAA-TAA-TTAA-TATTCTTATATGAAT-TTACTCAAATAAT
* *
26505892 AATATATAAT-TTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATACT-ATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATAAT
* ** * * * * *
26505953 AATATATGATACTATAAAA--GATAAT--TTAACATAATTATTAT-TAAATATATCTTAATTAA-
1 AATATATAATACTATAAAATTCTTAATAATT-A-AT-ATTCTTATATGAATTTA-CTCAAATAAT
* *
26506012 AATATATAAT-TTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATACT-ATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATAAT
*
26506073 AATATATTATACTATAAAA
1 AATATATAATACTATAAAA
26506092 GATAATTTGA
Statistics
Matches: 194, Mismatches: 40, Indels: 50
0.68 0.14 0.18
Matches are distributed among these distances:
57 11 0.06
58 9 0.05
59 48 0.25
60 43 0.22
61 63 0.32
62 10 0.05
63 10 0.05
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.42
Consensus pattern (61 bp):
AATATATAATACTATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATAAT
Found at i:26505905 original size:14 final size:15
Alignment explanation
Indices: 26505856--26505907 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
26505846 ATAAAATATA
26505856 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
26505871 TATTAAATATATTAT
1 AATTAAATATATTAT
26505886 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
26505899 AATTTAATA
1 AATTAAATA
26505908 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:26506163 original size:120 final size:120
Alignment explanation
Indices: 26505743--26506152 Score: 723
Period size: 120 Copynumber: 3.4 Consensus size: 120
26505733 ATATTTAAAT
26505743 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
1 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
* * * *
26505808 TCTGATATGAATTTACTCAAATAATAATATATGATACTATAAAATATAAATTAAC
66 TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTAAC
*
26505863 ATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
1 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
26505928 TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTAAC
66 TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTAAC
*
26505983 ATAATTATTATTAAATATATCTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
1 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
*
26506048 TCTTATATGAATTTACTCAAATCATAATATATTATACTATAAAAGATAATTTGAA-
66 TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTT-AAC
* *
26506103 ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
26506153 TAAAATAATT
Statistics
Matches: 278, Mismatches: 11, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
120 276 0.99
121 2 0.01
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (120 bp):
ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTAAC
Found at i:26506233 original size:38 final size:39
Alignment explanation
Indices: 26506191--26506273 Score: 150
Period size: 39 Copynumber: 2.2 Consensus size: 39
26506181 TAAGTGAGTA
26506191 AGAATTGAACTCTAAAAAT-AAAAAAAACATAACCATAT
1 AGAATTGAACTCTAAAAATAAAAAAAAACATAACCATAT
26506229 AGAATTGAACTCTAAAAATAAAAAAAAACATAACCATAT
1 AGAATTGAACTCTAAAAATAAAAAAAAACATAACCATAT
*
26506268 TGAATT
1 AGAATT
26506274 ATCATCAACA
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
38 19 0.44
39 24 0.56
ACGTcount: A:0.59, C:0.12, G:0.06, T:0.23
Consensus pattern (39 bp):
AGAATTGAACTCTAAAAATAAAAAAAAACATAACCATAT
Found at i:26510456 original size:18 final size:18
Alignment explanation
Indices: 26510420--26510458 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
26510410 GAAAAAGTTA
*
26510420 TTAGGCTAAAAAATGAGC
1 TTAGGCTAAAAAATAAGC
26510438 TTAGG-TAAAAAATTAAGC
1 TTAGGCTAAAAAA-TAAGC
26510456 TTA
1 TTA
26510459 TTTAAAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.46, C:0.08, G:0.18, T:0.28
Consensus pattern (18 bp):
TTAGGCTAAAAAATAAGC
Found at i:26510719 original size:24 final size:24
Alignment explanation
Indices: 26510698--26510747 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
26510688 AAGATTTAGT
*
26510698 ATTTATTAGTATAATATATTTAAC
1 ATTTATTAGCATAATATATTTAAC
* *
26510722 ATTTATTAGCATAATTTATTTGAC
1 ATTTATTAGCATAATATATTTAAC
26510746 AT
1 AT
26510748 ATGAATTTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (24 bp):
ATTTATTAGCATAATATATTTAAC
Found at i:26511269 original size:54 final size:54
Alignment explanation
Indices: 26511167--26511270 Score: 129
Period size: 54 Copynumber: 1.9 Consensus size: 54
26511157 TGAGTTGGGT
* * *
26511167 CACACGGCCGTGTCGCAAGCCGTGTGCCAAATCGTGTAACTCTCTAACTTGCGA
1 CACACGGCCGTGCCGCAAGCCATGTGCCAAATCGTGTAACCCTCTAACTTGCGA
* * **
26511221 CACACGGTCGTGCCGCAAGCCATGTGCTAGGTCGTGTAACCCAT-TAACTT
1 CACACGGCCGTGCCGCAAGCCATGTGCCAAATCGTGTAACCC-TCTAACTT
26511271 AATACACTAA
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
54 41 0.98
55 1 0.02
ACGTcount: A:0.22, C:0.31, G:0.24, T:0.23
Consensus pattern (54 bp):
CACACGGCCGTGCCGCAAGCCATGTGCCAAATCGTGTAACCCTCTAACTTGCGA
Found at i:26513957 original size:26 final size:26
Alignment explanation
Indices: 26513927--26513992 Score: 87
Period size: 26 Copynumber: 2.5 Consensus size: 26
26513917 TCAATAATGC
*
26513927 TCACACGAGTTGTGAAATAAGCCTAT
1 TCACACGAGCTGTGAAATAAGCCTAT
* *
26513953 TCACACGAGCTGTGGAATAAGCCTAC
1 TCACACGAGCTGTGAAATAAGCCTAT
* *
26513979 TCATACCAGCTGTG
1 TCACACGAGCTGTG
26513993 GGTCGGAATG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.24
Consensus pattern (26 bp):
TCACACGAGCTGTGAAATAAGCCTAT
Found at i:26518434 original size:24 final size:22
Alignment explanation
Indices: 26518378--26518435 Score: 55
Period size: 24 Copynumber: 2.5 Consensus size: 22
26518368 TGTTTTTTTA
*
26518378 AATTTTTTTAAAATATTTATATT
1 AATTTTTTT-TAATATTTATATT
*
26518401 -ATATTATTTTAATATTTAATAATT
1 AAT-TTTTTTTAATATTT-AT-ATT
26518425 AATTTTTTTTA
1 AATTTTTTTTA
26518436 TTGATTGAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
22 9 0.32
23 7 0.25
24 10 0.36
25 2 0.07
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (22 bp):
AATTTTTTTTAATATTTATATT
Found at i:26527804 original size:11 final size:11
Alignment explanation
Indices: 26527788--26527820 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
26527778 AGTCCCGAAT
26527788 TGTTTCTAAAG
1 TGTTTCTAAAG
26527799 TGTTTCTAAAG
1 TGTTTCTAAAG
26527810 TGTTTCTAAAG
1 TGTTTCTAAAG
26527821 CCTTGAGAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.27, C:0.09, G:0.18, T:0.45
Consensus pattern (11 bp):
TGTTTCTAAAG
Found at i:26529107 original size:19 final size:19
Alignment explanation
Indices: 26529083--26529122 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
26529073 TAAACAAAAA
26529083 TGCTCCAACACACGAAAGG
1 TGCTCCAACACACGAAAGG
*
26529102 TGCTCCAACACACTAAAGG
1 TGCTCCAACACACGAAAGG
26529121 TG
1 TG
26529123 TTGGTAGGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.35, C:0.30, G:0.20, T:0.15
Consensus pattern (19 bp):
TGCTCCAACACACGAAAGG
Found at i:26532068 original size:18 final size:20
Alignment explanation
Indices: 26532041--26532079 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
26532031 TTTTTTACTA
26532041 AAAAATATAAAT-AAATTAT
1 AAAAATATAAATAAAATTAT
26532060 AAAAA-ATAAATAAAATTAT
1 AAAAATATAAATAAAATTAT
26532079 A
1 A
26532080 TTGAATATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (20 bp):
AAAAATATAAATAAAATTAT
Found at i:26532241 original size:21 final size:21
Alignment explanation
Indices: 26532187--26532241 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
26532177 ATAAATTATG
*
26532187 AAAATTTTATAAAAATAATAA
1 AAAATTATATAAAAATAATAA
* *
26532208 AAAA-CATATTAAAAATATTAA
1 AAAATTATA-TAAAAATAATAA
26532229 AAAATTATATAAA
1 AAAATTATATAAA
26532242 CTTACAAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 2 0.07
21 23 0.82
22 3 0.11
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (21 bp):
AAAATTATATAAAAATAATAA
Found at i:26532511 original size:21 final size:21
Alignment explanation
Indices: 26532485--26532562 Score: 65
Period size: 21 Copynumber: 3.8 Consensus size: 21
26532475 TGGATAATAA
*
26532485 ATTTTTTAAATAATTTTATAT
1 ATTTTTTAAAGAATTTTATAT
* *
26532506 ATTTTTTGATG-A-TTTA-AT
1 ATTTTTTAAAGAATTTTATAT
*
26532524 GATATTTTAAAGAATTTT-TCAT
1 -ATTTTTTAAAGAATTTTAT-AT
*
26532546 GTTTTTTAAAGAATTTT
1 ATTTTTTAAAGAATTTT
26532563 TAGTTAAAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 10
0.71 0.13 0.16
Matches are distributed among these distances:
18 2 0.05
19 12 0.27
20 2 0.05
21 26 0.59
22 2 0.05
ACGTcount: A:0.33, C:0.01, G:0.08, T:0.58
Consensus pattern (21 bp):
ATTTTTTAAAGAATTTTATAT
Found at i:26532738 original size:15 final size:15
Alignment explanation
Indices: 26532718--26532751 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
26532708 TAATACATAT
26532718 GTATATATAT-GTTGA
1 GTATATATATAG-TGA
26532733 GTATATATATAGTGA
1 GTATATATATAGTGA
26532748 GTAT
1 GTAT
26532752 TTGGTAAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 17 0.94
16 1 0.06
ACGTcount: A:0.35, C:0.00, G:0.21, T:0.44
Consensus pattern (15 bp):
GTATATATATAGTGA
Found at i:26545797 original size:27 final size:27
Alignment explanation
Indices: 26545748--26545827 Score: 81
Period size: 28 Copynumber: 2.9 Consensus size: 27
26545738 ATTCTTGGTA
** *
26545748 GATACCCTTATTGATAATACTTTTGCAT
1 GATACCCTTATTGATCTTGCTTTTG-AT
*
26545776 -ATACCCTTATTGATCTTGCTTTTGGT
1 GATACCCTTATTGATCTTGCTTTTGAT
* *
26545802 GGATACCCTTACTAATCTTGCTTTTG
1 -GATACCCTTATTGATCTTGCTTTTG
26545828 GCGGATACCC
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
26 1 0.02
27 21 0.48
28 22 0.50
ACGTcount: A:0.21, C:0.20, G:0.14, T:0.45
Consensus pattern (27 bp):
GATACCCTTATTGATCTTGCTTTTGAT
Found at i:26545819 original size:28 final size:28
Alignment explanation
Indices: 26545776--26545840 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
26545766 ACTTTTGCAT
* * *
26545776 ATACCCTTATTGATCTTGCTTTTGGTGG
1 ATACCCTTACTAATCTTGCTTTTGGCGG
26545804 ATACCCTTACTAATCTTGCTTTTGGCGG
1 ATACCCTTACTAATCTTGCTTTTGGCGG
26545832 ATACCCTTA
1 ATACCCTTA
26545841 ACGATCTTGA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.18, C:0.23, G:0.17, T:0.42
Consensus pattern (28 bp):
ATACCCTTACTAATCTTGCTTTTGGCGG
Found at i:26545847 original size:28 final size:28
Alignment explanation
Indices: 26545776--26545849 Score: 96
Period size: 28 Copynumber: 2.6 Consensus size: 28
26545766 ACTTTTGCAT
** *
26545776 ATACCCTTATTGATCTTGCTTTTGGTGG
1 ATACCCTTAACGATCTTGCTTTTGGCGG
*
26545804 ATACCCTT-ACTAATCTTGCTTTTGGCGG
1 ATACCCTTAAC-GATCTTGCTTTTGGCGG
26545832 ATACCCTTAACGATCTTG
1 ATACCCTTAACGATCTTG
26545850 ATAAATTGAA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
28 37 0.95
29 2 0.05
ACGTcount: A:0.19, C:0.23, G:0.18, T:0.41
Consensus pattern (28 bp):
ATACCCTTAACGATCTTGCTTTTGGCGG
Found at i:26546427 original size:24 final size:24
Alignment explanation
Indices: 26546391--26546441 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
26546381 AGAATGTCGA
*
26546391 AAAGACCATATCA-AGATACGCCAT
1 AAAGACCAAATCAGAG-TACGCCAT
*
26546415 AAAGGCCAAATCAGAGTACGCCAT
1 AAAGACCAAATCAGAGTACGCCAT
26546439 AAA
1 AAA
26546442 AGCTAGCAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 22 0.92
25 2 0.08
ACGTcount: A:0.47, C:0.24, G:0.16, T:0.14
Consensus pattern (24 bp):
AAAGACCAAATCAGAGTACGCCAT
Found at i:26549230 original size:61 final size:61
Alignment explanation
Indices: 26549148--26549308 Score: 198
Period size: 61 Copynumber: 2.6 Consensus size: 61
26549138 ACAAAGGTTA
* * * * ** *
26549148 CCATGAAGGCTTACCCT-TCCAGAGTTCTGCCACAAAGGCGTTTCTTTACATTTTGTACTTG
1 CCATAAAGGCTT-TCCTGTCCAGAGTTTTGCCACAAAGGCGTTGCTTTACATTTAATACTCG
* *
26549209 CCATAAAGGCTTTCCTGTCCAGAGTTTTGGCACAAAGGTGTTGCTTTACATTTAATACTCG
1 CCATAAAGGCTTTCCTGTCCAGAGTTTTGCCACAAAGGCGTTGCTTTACATTTAATACTCG
* * *
26549270 CCTTAAAGGCTTTCTTGTCTAGAGTTTTGCCACAAAGGC
1 CCATAAAGGCTTTCCTGTCCAGAGTTTTGCCACAAAGGC
26549309 ATTCTTTTAC
Statistics
Matches: 85, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
60 3 0.04
61 82 0.96
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (61 bp):
CCATAAAGGCTTTCCTGTCCAGAGTTTTGCCACAAAGGCGTTGCTTTACATTTAATACTCG
Found at i:26550007 original size:28 final size:28
Alignment explanation
Indices: 26549959--26550091 Score: 149
Period size: 28 Copynumber: 4.8 Consensus size: 28
26549949 AACACTATTC
* *
26549959 TTGGCAGATACCTTTATTGATCATACTT
1 TTGGCAGATACCCTTACTGATCATACTT
* *
26549987 TTGGCGGATACCCTTACTGATCAAACTT
1 TTGGCAGATACCCTTACTGATCATACTT
* * *
26550015 TTGACAGATACCCTTACTGATCTTGCTT
1 TTGGCAGATACCCTTACTGATCATACTT
* * * * *
26550043 TTGGTAGATGCCCTTATTGATCTTGCTT
1 TTGGCAGATACCCTTACTGATCATACTT
*
26550071 TTGGCGGATACCCTTACTGAT
1 TTGGCAGATACCCTTACTGAT
26550092 ATTAATAAAT
Statistics
Matches: 88, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 88 1.00
ACGTcount: A:0.21, C:0.22, G:0.18, T:0.39
Consensus pattern (28 bp):
TTGGCAGATACCCTTACTGATCATACTT
Found at i:26550607 original size:42 final size:43
Alignment explanation
Indices: 26550548--26550640 Score: 134
Period size: 42 Copynumber: 2.2 Consensus size: 43
26550538 TTTATAGAGC
* *
26550548 ATGCCACAAAGGCCATATCAGAAT-ACCATAGAGGCTAACAAA
1 ATGCCACAAAGGCCATATCAAAATAACCATAAAGGCTAACAAA
* *
26550590 ATGCCATAAAGGCCATATCAAAATACACCATAAAGGCTAGCAAA
1 ATGCCACAAAGGCCATATCAAAATA-ACCATAAAGGCTAACAAA
26550634 ATGCCAC
1 ATGCCAC
26550641 CCAAGAGCCC
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
42 22 0.50
44 22 0.50
ACGTcount: A:0.45, C:0.25, G:0.15, T:0.15
Consensus pattern (43 bp):
ATGCCACAAAGGCCATATCAAAATAACCATAAAGGCTAACAAA
Found at i:26550633 original size:22 final size:20
Alignment explanation
Indices: 26550569--26550635 Score: 62
Period size: 22 Copynumber: 3.1 Consensus size: 20
26550559 GCCATATCAG
*
26550569 AATACCATAGAGGCTAACAA
1 AATACCATAAAGGCTAACAA
* *
26550589 AATGCCATAAAGGCCATATCAA
1 AATACCATAAAGG-C-TAACAA
*
26550611 AATACACCATAAAGGCTAGCAA
1 AAT--ACCATAAAGGCTAACAA
26550633 AAT
1 AAT
26550636 GCCACCCAAG
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
20 11 0.29
21 1 0.03
22 16 0.42
23 1 0.03
24 9 0.24
ACGTcount: A:0.49, C:0.21, G:0.13, T:0.16
Consensus pattern (20 bp):
AATACCATAAAGGCTAACAA
Found at i:26555982 original size:18 final size:19
Alignment explanation
Indices: 26555937--26555987 Score: 61
Period size: 18 Copynumber: 2.7 Consensus size: 19
26555927 CTTTTAAAAA
26555937 TATATCGATACC-TATTGAAT
1 TATATCGATACCATATT--AT
*
26555957 TTTATCGATACCATATT-T
1 TATATCGATACCATATTAT
26555975 TATATCGATACCA
1 TATATCGATACCA
26555988 GTTTTGTAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 13 0.46
20 11 0.39
21 4 0.14
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.41
Consensus pattern (19 bp):
TATATCGATACCATATTAT
Found at i:26559173 original size:50 final size:50
Alignment explanation
Indices: 26559072--26559286 Score: 260
Period size: 50 Copynumber: 4.4 Consensus size: 50
26559062 GTGCCTAGAA
* * * * * *
26559072 ATGGTCTTACACTGGCACTCATC--TC-GAGTCGATGCCGTGTCCCATAC
1 ATGGTCTTACACTAGCACTCCTCAGTCTGTGCCGATGCCATGTCCCAGAC
* * * *
26559119 ATGGTCTTACACT-G-ACTCTTCTCTGTCCGTGCCAATGTCATGTCCCAGAC
1 ATGGTCTTACACTAGCACTC--CTCAGTCTGTGCCGATGCCATGTCCCAGAC
26559169 ATGGTCTTACACTAGCACTCCTCAGTCTGTGCCGATGCCATGTCCCAGAC
1 ATGGTCTTACACTAGCACTCCTCAGTCTGTGCCGATGCCATGTCCCAGAC
* *
26559219 ATGGTCTTACTCTAGCACTCCTCGGTCTGTGCCGATGCCATGTCCCAGAC
1 ATGGTCTTACACTAGCACTCCTCAGTCTGTGCCGATGCCATGTCCCAGAC
*
26559269 ATGGTCTTACACTGGCAC
1 ATGGTCTTACACTAGCAC
26559287 ACTTATTGCC
Statistics
Matches: 146, Mismatches: 15, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
45 4 0.03
46 1 0.01
47 15 0.10
49 2 0.01
50 119 0.82
51 1 0.01
52 4 0.03
ACGTcount: A:0.19, C:0.33, G:0.20, T:0.28
Consensus pattern (50 bp):
ATGGTCTTACACTAGCACTCCTCAGTCTGTGCCGATGCCATGTCCCAGAC
Found at i:26562206 original size:23 final size:24
Alignment explanation
Indices: 26562180--26562231 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 24
26562170 ATTTCAAATG
* *
26562180 TTTTGACTTTGTTTTTGAGTCAC-
1 TTTTGACTTTGCTTTTGAGTAACA
*
26562203 TTTTCACTTTGCTTTTGAGTAACA
1 TTTTGACTTTGCTTTTGAGTAACA
26562227 TTTTG
1 TTTTG
26562232 CTACACCTGT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 20 0.83
24 4 0.17
ACGTcount: A:0.15, C:0.13, G:0.15, T:0.56
Consensus pattern (24 bp):
TTTTGACTTTGCTTTTGAGTAACA
Found at i:26563079 original size:48 final size:49
Alignment explanation
Indices: 26563016--26563111 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 49
26563006 AAAATAGAAC
26563016 ACACATATATATAAATCTATTGTTAATCTTACTCCTAAAA-GAAAAAAA
1 ACACATATATATAAATCTATTGTTAATCTTACTCCTAAAATGAAAAAAA
26563064 ACACATATATATAAATCTATTGTTAATCTTACTCCTAAAATGAAAAAA
1 ACACATATATATAAATCTATTGTTAATCTTACTCCTAAAATGAAAAAA
26563112 TAAAAAAAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
48 40 0.85
49 7 0.15
ACGTcount: A:0.49, C:0.15, G:0.04, T:0.32
Consensus pattern (49 bp):
ACACATATATATAAATCTATTGTTAATCTTACTCCTAAAATGAAAAAAA
Found at i:26569410 original size:33 final size:31
Alignment explanation
Indices: 26569363--26569459 Score: 90
Period size: 33 Copynumber: 3.1 Consensus size: 31
26569353 CCATAAATCC
*
26569363 TTTTCAATA-AACCTTTTCATATGTTAACCT
1 TTTTGAATACAACCTTTTCATATGTTAACCT
* * * *
26569393 TTTTAAGGAA-ACAACCTTTTCATTTGATATCCG
1 TTTT---GAATACAACCTTTTCATATGTTAACCT
*
26569426 TTTTGAATATAACCTTTTCATATGTTAACTCT
1 TTTTGAATACAACCTTTTCATATGTTAAC-CT
26569458 TT
1 TT
26569460 CAGGGTAACA
Statistics
Matches: 51, Mismatches: 10, Indels: 10
0.72 0.14 0.14
Matches are distributed among these distances:
30 7 0.14
31 17 0.33
32 4 0.08
33 23 0.45
ACGTcount: A:0.29, C:0.18, G:0.07, T:0.46
Consensus pattern (31 bp):
TTTTGAATACAACCTTTTCATATGTTAACCT
Found at i:26569478 original size:64 final size:62
Alignment explanation
Indices: 26569359--26569478 Score: 152
Period size: 64 Copynumber: 1.9 Consensus size: 62
26569349 CTTACCATAA
* *
26569359 ATCCTTTTCAATAAACCTTTTCATATGTTAACCTTTTTAAGGAAACAACCTTTTCATTTGAT
1 ATCCTTTTCAATAAACCTTTTCATATGTTAACCTTTTCAAGGAAACAACCGTTTCATTTGAT
* * * *
26569421 ATCCGTTTTGAATATAACCTTTTCATATGTTAA-CTCTTTCAGGGTAACAATCGTTTCA
1 ATCC-TTTTCAATA-AACCTTTTCATATGTTAACCT-TTTCAAGGAAACAACCGTTTCA
26569479 ACCTTTTCAT
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
62 4 0.08
63 10 0.20
64 35 0.71
ACGTcount: A:0.29, C:0.19, G:0.09, T:0.42
Consensus pattern (62 bp):
ATCCTTTTCAATAAACCTTTTCATATGTTAACCTTTTCAAGGAAACAACCGTTTCATTTGAT
Found at i:26569881 original size:31 final size:31
Alignment explanation
Indices: 26569846--26569905 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
26569836 TTTCTATTAA
*
26569846 TTACAAATTT-ACCCTTAACATTATAACTTTT
1 TTAC-AATTTAACCCTTAACATCATAACTTTT
* *
26569877 TTACAATTTAATCCTTAAGATCATAACTT
1 TTACAATTTAACCCTTAACATCATAACTT
26569906 GCAAATTCAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 5 0.20
31 20 0.80
ACGTcount: A:0.37, C:0.18, G:0.02, T:0.43
Consensus pattern (31 bp):
TTACAATTTAACCCTTAACATCATAACTTTT
Found at i:26571828 original size:20 final size:20
Alignment explanation
Indices: 26571787--26571871 Score: 82
Period size: 20 Copynumber: 4.3 Consensus size: 20
26571777 AGGCACGATT
* **
26571787 GTGCAATCAGAGGTGCCGAA
1 GTGCAAACAGAGGCACCGAA
* *
26571807 GTGCAAACAGAGACACCCAA
1 GTGCAAACAGAGGCACCGAA
* *
26571827 GTG-TAATAGAGGCACCGAA
1 GTGCAAACAGAGGCACCGAA
* *
26571846 GTGTAAACAGAGGCATCGAA
1 GTGCAAACAGAGGCACCGAA
26571866 GTGCAA
1 GTGCAA
26571872 TCCCCTACAA
Statistics
Matches: 51, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
19 15 0.29
20 36 0.71
ACGTcount: A:0.38, C:0.20, G:0.29, T:0.13
Consensus pattern (20 bp):
GTGCAAACAGAGGCACCGAA
Found at i:26571842 original size:19 final size:19
Alignment explanation
Indices: 26571815--26571851 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
26571805 AAGTGCAAAC
26571815 AGAGACACCCAAGTGTAAT
1 AGAGACACCCAAGTGTAAT
* *
26571834 AGAGGCACCGAAGTGTAA
1 AGAGACACCCAAGTGTAA
26571852 ACAGAGGCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.19, G:0.27, T:0.14
Consensus pattern (19 bp):
AGAGACACCCAAGTGTAAT
Found at i:26577917 original size:20 final size:20
Alignment explanation
Indices: 26577892--26577997 Score: 83
Period size: 20 Copynumber: 5.3 Consensus size: 20
26577882 GATGAGTAAT
*
26577892 AGAGGCACCGAAGTTCAAAC
1 AGAGGCACCGAAGTGCAAAC
*
26577912 AGAGGCA-C-AATTGTGCAATC
1 AGAGGCACCGAA--GTGCAAAC
* *
26577932 AGAGGTACCGAAGTGCAAAT
1 AGAGGCACCGAAGTGCAAAC
* * * *
26577952 AAAGACACCAAAGTG-TAAC
1 AGAGGCACCGAAGTGCAAAC
* *
26577971 AGAGGCATCGAAATGCAAAC
1 AGAGGCACCGAAGTGCAAAC
26577991 AGAGGCA
1 AGAGGCA
26577998 TGAAAGTGCA
Statistics
Matches: 64, Mismatches: 17, Indels: 10
0.70 0.19 0.11
Matches are distributed among these distances:
18 2 0.03
19 13 0.20
20 46 0.72
21 1 0.02
22 2 0.03
ACGTcount: A:0.42, C:0.20, G:0.25, T:0.12
Consensus pattern (20 bp):
AGAGGCACCGAAGTGCAAAC
Found at i:26577998 original size:20 final size:20
Alignment explanation
Indices: 26577968--26578007 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
26577958 ACCAAAGTGT
26577968 AACAGAGGCATCGAAA-TGCA
1 AACAGAGGCAT-GAAAGTGCA
26577988 AACAGAGGCATGAAAGTGCA
1 AACAGAGGCATGAAAGTGCA
26578008 TGATAATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.45, C:0.17, G:0.28, T:0.10
Consensus pattern (20 bp):
AACAGAGGCATGAAAGTGCA
Found at i:26587597 original size:27 final size:27
Alignment explanation
Indices: 26587567--26587624 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
26587557 AAATGAATTC
26587567 CTTTTAGAGTTTGCCAAAAAGGCTATT
1 CTTTTAGAGTTTGCCAAAAAGGCTATT
*
26587594 CTTTTAGAGTTTGCCACAAAGGCTATT
1 CTTTTAGAGTTTGCCAAAAAGGCTATT
26587621 CTTT
1 CTTT
26587625 CCTTACGTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (27 bp):
CTTTTAGAGTTTGCCAAAAAGGCTATT
Found at i:26591676 original size:24 final size:24
Alignment explanation
Indices: 26591631--26591676 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
26591621 AATTCGTGAC
* ** *
26591631 TTAATTAGTTTAGTAATTATTTTT
1 TTAATTACTTTAACAATAATTTTT
26591655 TTAATTACTTTAACAATAATTT
1 TTAATTACTTTAACAATAATTT
26591677 ATTCAATTTG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.57
Consensus pattern (24 bp):
TTAATTACTTTAACAATAATTTTT
Found at i:26594028 original size:21 final size:21
Alignment explanation
Indices: 26594002--26594044 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
26593992 AATGGTTGTT
*
26594002 ATATACTTATAACAACACTTG
1 ATATACTTATAAAAACACTTG
* *
26594023 ATATACTTCTAAAAACATTTG
1 ATATACTTATAAAAACACTTG
26594044 A
1 A
26594045 GATTTAGATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.44, C:0.16, G:0.05, T:0.35
Consensus pattern (21 bp):
ATATACTTATAAAAACACTTG
Found at i:26594959 original size:20 final size:20
Alignment explanation
Indices: 26594915--26594961 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
26594905 AATAGTTAAG
*
26594915 TCATAAACAGTGGAGTCAAA
1 TCATAAACAGTAGAGTCAAA
*
26594935 CCATAAACAGTAGAGTTC-AA
1 TCATAAACAGTAGAG-TCAAA
26594955 TCATAAA
1 TCATAAA
26594962 AATTACTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
20 21 0.91
21 2 0.09
ACGTcount: A:0.47, C:0.17, G:0.15, T:0.21
Consensus pattern (20 bp):
TCATAAACAGTAGAGTCAAA
Found at i:26595913 original size:29 final size:29
Alignment explanation
Indices: 26595874--26595931 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
26595864 ATTGAAGGCA
26595874 ACATTTTTCAGACAGCAATGACCAAAAAC
1 ACATTTTTCAGACAGCAATGACCAAAAAC
26595903 ACATTTTTCAGACAGCAATGACCAAAAAC
1 ACATTTTTCAGACAGCAATGACCAAAAAC
26595932 TGTGAGATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.45, C:0.24, G:0.10, T:0.21
Consensus pattern (29 bp):
ACATTTTTCAGACAGCAATGACCAAAAAC
Found at i:26623623 original size:21 final size:21
Alignment explanation
Indices: 26623599--26623643 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
26623589 GTCATAATTC
*
26623599 CCACCCA-ATCCAACCAATACA
1 CCACCCATA-CCAACCAACACA
*
26623620 CCACCCGTACCAACCAACACA
1 CCACCCATACCAACCAACACA
26623641 CCA
1 CCA
26623644 TGTGGGGATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 20 0.95
22 1 0.05
ACGTcount: A:0.40, C:0.51, G:0.02, T:0.07
Consensus pattern (21 bp):
CCACCCATACCAACCAACACA
Found at i:26624026 original size:27 final size:27
Alignment explanation
Indices: 26623996--26624055 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
26623986 TTTCATCTCT
26623996 TAGGGGCATAACAGTCATTTTACCCTA
1 TAGGGGCATAACAGTCATTTTACCCTA
* ** * *
26624023 TAGGGGTATTTCAGTCATTTTCCCCTT
1 TAGGGGCATAACAGTCATTTTACCCTA
26624050 TAGGGG
1 TAGGGG
26624056 TATTTCGGTT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.35
Consensus pattern (27 bp):
TAGGGGCATAACAGTCATTTTACCCTA
Found at i:26624412 original size:27 final size:27
Alignment explanation
Indices: 26624009--26624411 Score: 394
Period size: 27 Copynumber: 15.0 Consensus size: 27
26623999 GGGCATAACA
* *
26624009 GTCATTTTACCCTATAGGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
26624036 GTCATTTTCCCCTTTAGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * *
26624063 GTTATTCTACCCTATGAGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * **
26624090 GTTATTCTACCCTATAAGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * **
26624117 CTCATTCTACCCTATGAGGGTATTTTA
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
26624144 GTCATTTTACCCTATTGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
26624171 GTTATTTTACCCTATAGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
26624198 GTCATTTTACACTATGAGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
26624225 GTCATTTTACCCTATTGGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
26624252 GTCATGTTAACCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * *
26624279 GTCATTTTACCCTACGAGGATATCTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*** * *
26624306 GTCATTTTACCCTACAAGAGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
26624333 GTCATTTTACTCTA-CGGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
26624359 GTCATTTTACCCTATGAGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
*
26624386 GTCATTTTATCCTATGGGGGTATTTC
1 GTCATTTTACCCTATGGGGGTATTTC
26624412 ATGTTAGAGT
Statistics
Matches: 316, Mismatches: 59, Indels: 2
0.84 0.16 0.01
Matches are distributed among these distances:
26 20 0.06
27 296 0.94
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.42
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:26625971 original size:27 final size:27
Alignment explanation
Indices: 26625907--26625973 Score: 98
Period size: 27 Copynumber: 2.5 Consensus size: 27
26625897 GCGTTCCAAC
26625907 ATTTCGGTCATTTTACCCTATGGAGGT
1 ATTTCGGTCATTTTACCCTATGGAGGT
** *
26625934 ATTTCCATCATTTTACCCTATGGGGGT
1 ATTTCGGTCATTTTACCCTATGGAGGT
*
26625961 ATTTTGGTCATTT
1 ATTTCGGTCATTT
26625974 GACCTATTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.18, C:0.18, G:0.19, T:0.45
Consensus pattern (27 bp):
ATTTCGGTCATTTTACCCTATGGAGGT
Found at i:26627706 original size:21 final size:21
Alignment explanation
Indices: 26627682--26627723 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
26627672 GAAGTTAAAA
26627682 TGTTTTAATTTCACA-TTAATT
1 TGTTTTAATTTC-CATTTAATT
26627703 TGTTTTAATTTCCATTTAATT
1 TGTTTTAATTTCCATTTAATT
26627724 ACAAAATTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 2 0.10
21 18 0.90
ACGTcount: A:0.26, C:0.10, G:0.05, T:0.60
Consensus pattern (21 bp):
TGTTTTAATTTCCATTTAATT
Found at i:26633335 original size:21 final size:21
Alignment explanation
Indices: 26633296--26633335 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
26633286 ATTATATAGA
*
26633296 TTAAAAATTACAATTATTTTT
1 TTAAAAATTACAATGATTTTT
* *
26633317 TTAAAATTTATAATGATTT
1 TTAAAAATTACAATGATTT
26633336 ATCAAATTTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (21 bp):
TTAAAAATTACAATGATTTTT
Found at i:26634066 original size:8 final size:8
Alignment explanation
Indices: 26634038--26634072 Score: 52
Period size: 8 Copynumber: 4.1 Consensus size: 8
26634028 ATATATACTA
26634038 AATAAAAT
1 AATAAAAT
26634046 AATAATAACT
1 AATAA-AA-T
26634056 AATAAAAT
1 AATAAAAT
26634064 AATAAAAT
1 AATAAAAT
26634072 A
1 A
26634073 TCATTTAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
8 15 0.60
9 4 0.16
10 6 0.24
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (8 bp):
AATAAAAT
Found at i:26634664 original size:16 final size:18
Alignment explanation
Indices: 26634631--26634671 Score: 61
Period size: 16 Copynumber: 2.4 Consensus size: 18
26634621 ACATAAATTC
26634631 AAAA-AACGAAACACCTA
1 AAAATAACGAAACACCTA
26634648 AAAATAACG-AACA-CTA
1 AAAATAACGAAACACCTA
26634664 AAAATAAC
1 AAAATAAC
26634672 AGTCCTAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 11 0.48
17 8 0.35
18 4 0.17
ACGTcount: A:0.66, C:0.20, G:0.05, T:0.10
Consensus pattern (18 bp):
AAAATAACGAAACACCTA
Found at i:26640248 original size:46 final size:46
Alignment explanation
Indices: 26640170--26640257 Score: 115
Period size: 46 Copynumber: 1.9 Consensus size: 46
26640160 AAAAGTGTAG
* * * *
26640170 TGTGGGCCTTAGCCCATTACAATATTAGAATCAGAAATAGAATAGA
1 TGTGGGCCTAAGCCCAATACAATATCAAAATCAGAAATAGAATAGA
*
26640216 TGTGGGCCTAAGCCCAATACAAT-TACAAAATCAGTAATAGAA
1 TGTGGGCCTAAGCCCAATACAATAT-CAAAATCAGAAATAGAA
26640258 ATGCAACAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
45 1 0.03
46 35 0.97
ACGTcount: A:0.41, C:0.17, G:0.18, T:0.24
Consensus pattern (46 bp):
TGTGGGCCTAAGCCCAATACAATATCAAAATCAGAAATAGAATAGA
Found at i:26640460 original size:22 final size:22
Alignment explanation
Indices: 26640435--26640481 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
26640425 CTAAGAACCG
* * *
26640435 TAAACAGGATAGCTATAAGCTA
1 TAAACAGAATAGCTACAAGCCA
*
26640457 TAAACAGAATGGCTACAAGCCA
1 TAAACAGAATAGCTACAAGCCA
26640479 TAA
1 TAA
26640482 GTACAGTAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (22 bp):
TAAACAGAATAGCTACAAGCCA
Found at i:26640528 original size:32 final size:31
Alignment explanation
Indices: 26640473--26640643 Score: 202
Period size: 32 Copynumber: 5.4 Consensus size: 31
26640463 GAATGGCTAC
* *
26640473 AAGCCATAAGTACAGTAATATGATTGGCACA
1 AAGCCATCAGTACAGTAATATGATCGGCACA
* *
26640504 AAGCCATCAGTAGCAGTGATATGATCGACACA
1 AAGCCATCAGTA-CAGTAATATGATCGGCACA
* *
26640536 CAA-CCATCAGTAACGGTAATATGATTGGCACA
1 -AAGCCATCAGT-ACAGTAATATGATCGGCACA
26640568 AAGCCATCAGTTAC-GATAATATGATCGGCACA
1 AAGCCATCAG-TACAG-TAATATGATCGGCACA
* *
26640600 AAGCCATCAGTAACGGTAATATGATCGACACA
1 AAGCCATCAGT-ACAGTAATATGATCGGCACA
26640632 AAGCCATCAGTA
1 AAGCCATCAGTA
26640644 GCGTCACAGT
Statistics
Matches: 122, Mismatches: 10, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
31 16 0.13
32 101 0.83
33 5 0.04
ACGTcount: A:0.39, C:0.21, G:0.19, T:0.20
Consensus pattern (31 bp):
AAGCCATCAGTACAGTAATATGATCGGCACA
Found at i:26640590 original size:64 final size:65
Alignment explanation
Indices: 26640473--26640642 Score: 233
Period size: 64 Copynumber: 2.7 Consensus size: 65
26640463 GAATGGCTAC
* * *
26640473 AAGCCATAAGT-ACAGTAATATGATTGGCACAAAGCCATCAG-TAGCAGTGATATGATCGACACA
1 AAGCCATCAGTAACGGTAATATGATTGGCACAAAGCCATCAGTTAGCAGTAATATGATCGACACA
*
26640536 CAA-CCATCAGTAACGGTAATATGATTGGCACAAAGCCATCAGTTA-C-GATAATATGATCGGCA
1 -AAGCCATCAGTAACGGTAATATGATTGGCACAAAGCCATCAGTTAGCAG-TAATATGATCGACA
26640598 CA
64 CA
* *
26640600 AAGCCATCAGTAACGGTAATATGATCGACACAAAGCCATCAGT
1 AAGCCATCAGTAACGGTAATATGATTGGCACAAAGCCATCAGT
26640643 AGCGTCACAG
Statistics
Matches: 96, Mismatches: 6, Indels: 8
0.87 0.05 0.07
Matches are distributed among these distances:
63 10 0.10
64 84 0.88
65 2 0.02
ACGTcount: A:0.39, C:0.21, G:0.19, T:0.21
Consensus pattern (65 bp):
AAGCCATCAGTAACGGTAATATGATTGGCACAAAGCCATCAGTTAGCAGTAATATGATCGACACA
Found at i:26640716 original size:27 final size:26
Alignment explanation
Indices: 26640681--26640746 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 26
26640671 TATCGCCGCA
*
26640681 AAGCTACCAGTAATAGT-ATATGTGGCC
1 AAGCCACCAGTAATAGTGAT-TGTGG-C
*
26640708 AAGCCACCAGTAATAGTGATTGTGGT
1 AAGCCACCAGTAATAGTGATTGTGGC
26640734 AGAGCCACCAGTA
1 A-AGCCACCAGTA
26640747 CAATACTTCC
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
26 1 0.03
27 32 0.91
28 2 0.06
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.23
Consensus pattern (26 bp):
AAGCCACCAGTAATAGTGATTGTGGC
Found at i:26640899 original size:24 final size:24
Alignment explanation
Indices: 26640815--26640896 Score: 110
Period size: 24 Copynumber: 3.4 Consensus size: 24
26640805 CCATGCTCAG
26640815 AATCAGTCATATAAATCACAGACA
1 AATCAGTCATATAAATCACAGACA
** * *
26640839 AATCAGTCATACCATTCACAAACA
1 AATCAGTCATATAAATCACAGACA
*
26640863 AATCAGTCATTTAAATCACAGACA
1 AATCAGTCATATAAATCACAGACA
*
26640887 AATCAATCAT
1 AATCAGTCAT
26640897 TTACACTCGA
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.48, C:0.23, G:0.06, T:0.23
Consensus pattern (24 bp):
AATCAGTCATATAAATCACAGACA
Found at i:26640967 original size:27 final size:26
Alignment explanation
Indices: 26640948--26641435 Score: 405
Period size: 27 Copynumber: 18.2 Consensus size: 26
26640938 TATTACAGTA
* *
26640948 ATTTTACCTTATAGGGGTATTTTGGTC
1 ATTTTACCCTAT-GGGGTATTTCGGTC
* * *
26640975 ATTTAACCCTATAGAGGTATTAT-GATC
1 ATTTTACCCTAT-GGGGTATT-TCGGTC
26641002 ATTTTACCCTATTGGGGTATTTCGGTC
1 ATTTTACCCTA-TGGGGTATTTCGGTC
* **
26641029 ATTTTACCCTATTGGGTATTTTTGTC
1 ATTTTACCCTATGGGGTATTTCGGTC
* *
26641055 ATTTTATCCTATGGGGGTATTTTGGTC
1 ATTTTACCCTAT-GGGGTATTTCGGTC
* *
26641082 ATTTTATCCTATGGGGGTATTTCAGTC
1 ATTTTACCCTAT-GGGGTATTTCGGTC
* *
26641109 ATTTTACCTTATAGGGGTATTTCAG-C
1 ATTTTACCCTAT-GGGGTATTTCGGTC
* ***
26641135 TATTCTACCCTATGAGGGTATTTTTATC
1 -ATTTTACCCTATG-GGGTATTTCGGTC
26641163 ATTTTACCCTATGAGGGTATTTCGGTC
1 ATTTTACCCTATG-GGGTATTTCGGTC
* *
26641190 ATTTTACCTTATTGGGGTATTTTGGTC
1 ATTTTACCCTA-TGGGGTATTTCGGTC
*
26641217 ATTTTACCCTATGGGGGTA-TTCTAGTC
1 ATTTTACCCTAT-GGGGTATTTC-GGTC
* *
26641244 ATTTTATCTTATAGGGGTATTTCGGTC
1 ATTTTACCCTAT-GGGGTATTTCGGTC
*
26641271 ATTTTACCCTATGGTGGTATTAT-GGTT
1 ATTTTACCCTATGG-GGTATT-TCGGTC
* *
26641298 ATTCTACCCTATCAGGGTATTTCGGTC
1 ATTTTACCCTAT-GGGGTATTTCGGTC
* * *
26641325 ATTCTACCCTATGGGGGTATTTTGGTA
1 ATTTTACCCTAT-GGGGTATTTCGGTC
* *
26641352 ATTTTACCCT-TCGGGGGTATTTCGATA
1 ATTTTACCCTAT--GGGGTATTTCGGTC
* * *
26641379 ATTTTACCCTTTGGAGGTATTTTGGTA
1 ATTTTACCCTATGG-GGTATTTCGGTC
*
26641406 ATTTTACCC-ATCGAGGG-ATTTCGCTC
1 ATTTTACCCTAT-G-GGGTATTTCGGTC
26641432 ATTT
1 ATTT
26641436 AACAACCTTT
Statistics
Matches: 386, Mismatches: 55, Indels: 41
0.80 0.11 0.09
Matches are distributed among these distances:
26 46 0.12
27 328 0.85
28 12 0.03
ACGTcount: A:0.19, C:0.16, G:0.21, T:0.44
Consensus pattern (26 bp):
ATTTTACCCTATGGGGTATTTCGGTC
Found at i:26642181 original size:4 final size:4
Alignment explanation
Indices: 26642172--26642232 Score: 63
Period size: 4 Copynumber: 15.2 Consensus size: 4
26642162 TATTGTTAGT
* * *
26642172 TTTA TTTA TTTA TTT- GTTA TTAA TCTTA TTTA TTTA TTT- GTTA TTTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TTTA TTTA TTTA TTTA -TTTA
26642220 TTTA TTTA TTTA T
1 TTTA TTTA TTTA T
26642233 GTTTTGTTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
3 4 0.09
4 37 0.79
5 6 0.13
ACGTcount: A:0.23, C:0.02, G:0.03, T:0.72
Consensus pattern (4 bp):
TTTA
Found at i:26642182 original size:24 final size:21
Alignment explanation
Indices: 26642157--26642235 Score: 81
Period size: 24 Copynumber: 3.5 Consensus size: 21
26642147 TTTTACCCAT
26642157 TTTATTATTGTTAGTTTTATTTA
1 TTTATT-TTGTTA-TTTTATTTA
26642180 TTTA-TTTGTTATTAATCTTATTTA
1 TTTATTTTGTTA-T--T-TTATTTA
26642204 TTTA-TTTGTTATTTTATTTA
1 TTTATTTTGTTATTTTATTTA
26642224 TTTATTTATGTT
1 TTTATTT-TGTT
26642236 TTGTTTTCTT
Statistics
Matches: 50, Mismatches: 1, Indels: 11
0.81 0.02 0.18
Matches are distributed among these distances:
20 11 0.22
21 10 0.20
22 5 0.10
23 6 0.12
24 18 0.36
ACGTcount: A:0.22, C:0.01, G:0.06, T:0.71
Consensus pattern (21 bp):
TTTATTTTGTTATTTTATTTA
Found at i:26642184 original size:20 final size:20
Alignment explanation
Indices: 26642164--26642230 Score: 89
Period size: 24 Copynumber: 3.1 Consensus size: 20
26642154 CATTTTATTA
26642164 TTGTTAGTTTTATTTATTTAT
1 TTGTTA-TTTTATTTATTTAT
26642185 TTGTTATTAATCTTATTTATTTAT
1 TTGTTA-T--T-TTATTTATTTAT
26642209 TTGTTATTTTATTTATTTAT
1 TTGTTATTTTATTTATTTAT
26642229 TT
1 TT
26642231 ATGTTTTGTT
Statistics
Matches: 42, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
20 14 0.33
21 8 0.19
23 2 0.05
24 18 0.43
ACGTcount: A:0.21, C:0.01, G:0.06, T:0.72
Consensus pattern (20 bp):
TTGTTATTTTATTTATTTAT
Found at i:26642242 original size:24 final size:25
Alignment explanation
Indices: 26642173--26642251 Score: 76
Period size: 24 Copynumber: 3.2 Consensus size: 25
26642163 ATTGTTAGTT
26642173 TTATTTATTTA--TTTGTTATTAATC
1 TTATTTATTTATTTTTGTT-TTAATC
*
26642197 TTATTTATTTATTTGTTATTTT-AT-
1 TTATTTATTTATTT-TTGTTTTAATC
**
26642221 TTATTTATTTATGTTTTGTTTTCTTC
1 TTATTTATTTAT-TTTTGTTTTAATC
26642247 TTATT
1 TTATT
26642252 CTTTTTAATT
Statistics
Matches: 46, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
24 29 0.63
25 5 0.11
26 8 0.17
27 4 0.09
ACGTcount: A:0.19, C:0.04, G:0.05, T:0.72
Consensus pattern (25 bp):
TTATTTATTTATTTTTGTTTTAATC
Found at i:26642280 original size:3 final size:3
Alignment explanation
Indices: 26642266--26642330 Score: 57
Period size: 3 Copynumber: 22.7 Consensus size: 3
26642256 TTAATTGTTT
* * * *
26642266 TTA TTA TCA TTA TTA CTA TTA TT- TT- TTA TT- TTA TT- TTC CTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
26642310 TTA TTA TTA TTA TTAA TTA TT
1 TTA TTA TTA TTA TT-A TTA TT
26642331 TAGCTATGGA
Statistics
Matches: 51, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
2 8 0.16
3 40 0.78
4 3 0.06
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:26643957 original size:6 final size:6
Alignment explanation
Indices: 26643946--26644001 Score: 60
Period size: 6 Copynumber: 9.3 Consensus size: 6
26643936 TAAGTTTATT
* * * *
26643946 TTTTTA TTTTTA TTTGTTC TTTTTA -TTTTA TGTTTA TGTTTA TTGTTA
1 TTTTTA TTTTTA TTT-TTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
26643994 TTTTTA TT
1 TTTTTA TT
26644002 AATTTCTTTG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
5 5 0.12
6 32 0.76
7 5 0.12
ACGTcount: A:0.14, C:0.02, G:0.07, T:0.77
Consensus pattern (6 bp):
TTTTTA
Found at i:26644965 original size:17 final size:18
Alignment explanation
Indices: 26644943--26644976 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
26644933 AAATAGAAAA
26644943 AAAAG-AAAAAATATATC
1 AAAAGAAAAAAATATATC
26644960 AAAAGAAAAAAATATAT
1 AAAAGAAAAAAATATAT
26644977 TGATTATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.74, C:0.03, G:0.06, T:0.18
Consensus pattern (18 bp):
AAAAGAAAAAAATATATC
Found at i:26651260 original size:42 final size:41
Alignment explanation
Indices: 26651166--26651261 Score: 122
Period size: 42 Copynumber: 2.3 Consensus size: 41
26651156 CTAACACATG
* *
26651166 GCCTAGCACACGGGCGTGTGGGGCTACTTTGAGAGTTACAC
1 GCCTAGCACACGAGCGGGTGGGGCTACTTTGAGAGTTACAC
*
26651207 GGCTAGGCACACGAGCGGGTGGGGCTA-TTTCGAGAGTTACAC
1 GCCTA-GCACACGAGCGGGTGGGGCTACTTT-GAGAGTTACAC
*
26651249 GACCTAACACACG
1 G-CCTAGCACACG
26651262 GGCGTGTGAC
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
41 7 0.15
42 37 0.79
43 3 0.06
ACGTcount: A:0.23, C:0.25, G:0.33, T:0.19
Consensus pattern (41 bp):
GCCTAGCACACGAGCGGGTGGGGCTACTTTGAGAGTTACAC
Found at i:26655826 original size:23 final size:23
Alignment explanation
Indices: 26655800--26655846 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
26655790 AAAAGATGCA
26655800 AATTTTGATCACTACATAATCTG
1 AATTTTGATCACTACATAATCTG
26655823 AATTTTGATCACTACATAATCTG
1 AATTTTGATCACTACATAATCTG
26655846 A
1 A
26655847 GTGATTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.36, C:0.17, G:0.09, T:0.38
Consensus pattern (23 bp):
AATTTTGATCACTACATAATCTG
Found at i:26656953 original size:25 final size:25
Alignment explanation
Indices: 26656881--26656957 Score: 104
Period size: 25 Copynumber: 3.1 Consensus size: 25
26656871 CATTAAGGAT
* *
26656881 TACCGATT-GCAACTCGTGAGAGCT
1 TACCGATTCTCAACTCGTGAGAGCA
*
26656905 TACCGATTCTCAGCTCGTGAGAGCA
1 TACCGATTCTCAACTCGTGAGAGCA
26656930 TACCGATTCTCAACTCGT-ATGAGCA
1 TACCGATTCTCAACTCGTGA-GAGCA
26656955 TAC
1 TAC
26656958 ATGTACAGGA
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
24 9 0.19
25 38 0.81
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (25 bp):
TACCGATTCTCAACTCGTGAGAGCA
Found at i:26665960 original size:30 final size:31
Alignment explanation
Indices: 26665905--26665972 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
26665895 ACCCTTAAAA
** * **
26665905 TATTTACACTATTGGTCCTTCAAATTTTTTG
1 TATTTACACTATTAATCCCTCAAATTTTGAG
26665936 TATTTACACT-TTAATCCCTCAAATTTTGAG
1 TATTTACACTATTAATCCCTCAAATTTTGAG
26665966 TATTTAC
1 TATTTAC
26665973 TCTTGGACAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 22 0.69
31 10 0.31
ACGTcount: A:0.26, C:0.18, G:0.07, T:0.49
Consensus pattern (31 bp):
TATTTACACTATTAATCCCTCAAATTTTGAG
Found at i:26666345 original size:17 final size:17
Alignment explanation
Indices: 26666325--26666358 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
26666315 ATTAATGAAG
26666325 TTAACTAAATTAATTTC
1 TTAACTAAATTAATTTC
* *
26666342 TTAATTAAATTATTTTC
1 TTAACTAAATTAATTTC
26666359 CCAACCAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAACTAAATTAATTTC
Found at i:26672778 original size:32 final size:32
Alignment explanation
Indices: 26672737--26672798 Score: 108
Period size: 32 Copynumber: 1.9 Consensus size: 32
26672727 CCCTTGTTTT
26672737 TTAATGTGTGTGCCATCCATA-CACTTGAACAC
1 TTAATGTGTGTGCCATCCATATC-CTTGAACAC
26672769 TTAATGTGTGTGCCATCCATATCCTTGAAC
1 TTAATGTGTGTGCCATCCATATCCTTGAAC
26672799 CCTAAGTATA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 28 0.97
33 1 0.03
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (32 bp):
TTAATGTGTGTGCCATCCATATCCTTGAACAC
Found at i:26678238 original size:45 final size:44
Alignment explanation
Indices: 26678188--26678304 Score: 155
Period size: 45 Copynumber: 2.6 Consensus size: 44
26678178 AATGAAAATA
*
26678188 AAGGTGGTTGCCATGTGTTGATTTCACCAAATACCAATG-GTTAT
1 AAGGTGGTTGCTATGTGTTGATTTCACCAAATACCAATGAG-TAT
*** *
26678232 ATAGGTGGTTGCTATGTGTTGATTTCACCTGGTACCATTGAGTAT
1 A-AGGTGGTTGCTATGTGTTGATTTCACCAAATACCAATGAGTAT
*
26678277 AAGGTGGTTGCTATGTGCTGATTTCACC
1 AAGGTGGTTGCTATGTGTTGATTTCACC
26678305 GAGTACTATT
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
44 27 0.42
45 37 0.57
46 1 0.02
ACGTcount: A:0.22, C:0.15, G:0.26, T:0.37
Consensus pattern (44 bp):
AAGGTGGTTGCTATGTGTTGATTTCACCAAATACCAATGAGTAT
Found at i:26678299 original size:44 final size:43
Alignment explanation
Indices: 26678188--26678342 Score: 152
Period size: 44 Copynumber: 3.5 Consensus size: 43
26678178 AATGAAAATA
* * ** *
26678188 AAGGTGGTTGCCATGTGTTGATTTCACCAAATACCAATG-GTTAT
1 AAGGTGGTTGCTATGTGCTGATTTCACC-GGTACCATTGAG-TAT
*
26678232 ATAGGTGGTTGCTATGTGTTGATTTCACCTGGTACCATTGAGTAT
1 A-AGGTGGTTGCTATGTGCTGATTTCACC-GGTACCATTGAGTAT
* * *
26678277 AAGGTGGTTGCTATGTGCTGATTTCACCGAGTACTATTGACTAC
1 AAGGTGGTTGCTATGTGCTGATTTCACCG-GTACCATTGAGTAT
*
26678321 AAGGGTGG-TGCTGTGTGCTGAT
1 AA-GGTGGTTGCTATGTGCTGAT
26678343 CCACCGTGTA
Statistics
Matches: 97, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
43 1 0.01
44 53 0.55
45 42 0.43
46 1 0.01
ACGTcount: A:0.22, C:0.15, G:0.28, T:0.35
Consensus pattern (43 bp):
AAGGTGGTTGCTATGTGCTGATTTCACCGGTACCATTGAGTAT
Found at i:26680080 original size:28 final size:28
Alignment explanation
Indices: 26680040--26680095 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
26680030 ATGGCATTTT
26680040 TCTTAGTAGGAGGTTTCTAAATTGTATG
1 TCTTAGTAGGAGGTTTCTAAATTGTATG
*
26680068 TCTTAGTAGGAGGTTTCTAAATTTTATG
1 TCTTAGTAGGAGGTTTCTAAATTGTATG
26680096 GCAATTAATG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.25, C:0.07, G:0.23, T:0.45
Consensus pattern (28 bp):
TCTTAGTAGGAGGTTTCTAAATTGTATG
Found at i:26682329 original size:3 final size:3
Alignment explanation
Indices: 26682315--26682348 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
26682305 CTGTGGGATA
* *
26682315 TTC TTA TTC TTC TTC TTC TTC TTC TTC TTT TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
26682349 GGATCATCAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.03, C:0.26, G:0.00, T:0.71
Consensus pattern (3 bp):
TTC
Done.