Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 160249
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.33
Found at i:4716 original size:28 final size:27
Alignment explanation
Indices: 4685--4749 Score: 78
Period size: 28 Copynumber: 2.4 Consensus size: 27
4675 TTAAACTTGA
**
4685 TTTTTTTTTGCTC-ACTTTTTTTTCTTTC
1 TTTTTTTTTGCTCGA-TTTTTTTT-TCAC
*
4713 TTTTTTTTTGTTCGATTTTTTTTTCAC
1 TTTTTTTTTGCTCGATTTTTTTTTCAC
4740 TTTTTTTTTG
1 TTTTTTTTTG
4750 AATTTTTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
27 12 0.36
28 20 0.61
29 1 0.03
ACGTcount: A:0.05, C:0.12, G:0.06, T:0.77
Consensus pattern (27 bp):
TTTTTTTTTGCTCGATTTTTTTTTCAC
Found at i:4731 original size:13 final size:12
Alignment explanation
Indices: 4715--4760 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
4705 TTTCTTTCTT
4715 TTTTTTTGTTCGA
1 TTTTTTT-TTCGA
4728 TTTTTTTTTC-A
1 TTTTTTTTTCGA
4739 CTTTTTTTTT-GAA
1 -TTTTTTTTTCG-A
4752 TTTTTTTTT
1 TTTTTTTTT
4761 GAATTTCGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
11 1 0.03
12 21 0.70
13 8 0.27
ACGTcount: A:0.09, C:0.07, G:0.07, T:0.78
Consensus pattern (12 bp):
TTTTTTTTTCGA
Found at i:4761 original size:12 final size:12
Alignment explanation
Indices: 4727--4766 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
4717 TTTTTGTTCG
*
4727 ATTTTTTTTTCA
1 ATTTTTTTTTGA
*
4739 CTTTTTTTTTGA
1 ATTTTTTTTTGA
4751 ATTTTTTTTTGA
1 ATTTTTTTTTGA
4763 ATTT
1 ATTT
4767 CGATTTTTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.15, C:0.05, G:0.05, T:0.75
Consensus pattern (12 bp):
ATTTTTTTTTGA
Found at i:4769 original size:42 final size:43
Alignment explanation
Indices: 4668--4775 Score: 109
Period size: 42 Copynumber: 2.5 Consensus size: 43
4658 GACTTTTCAC
* ***
4668 TTTTTTTTTAAACTT-GATTTTTTTTTGCTCACTTTTTTTTCTTTC
1 TTTTTTTTTGAA-TTCGA-TTTTTTTT-CTCACTTTTTTTTCTGAA
4713 TTTTTTTTTG--TTCGATTTTTTTT-TCACTTTTTTTT-TGAA
1 TTTTTTTTTGAATTCGATTTTTTTTCTCACTTTTTTTTCTGAA
4752 TTTTTTTTTGAATTTCGATTTTTT
1 TTTTTTTTTGAA-TTCGATTTTTT
4776 GATACTCCAA
Statistics
Matches: 55, Mismatches: 4, Indels: 11
0.79 0.06 0.16
Matches are distributed among these distances:
39 11 0.20
40 12 0.22
42 21 0.38
43 2 0.04
45 9 0.16
ACGTcount: A:0.11, C:0.09, G:0.06, T:0.73
Consensus pattern (43 bp):
TTTTTTTTTGAATTCGATTTTTTTTCTCACTTTTTTTTCTGAA
Found at i:13641 original size:13 final size:13
Alignment explanation
Indices: 13623--13648 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
13613 ACCTGAAAGC
13623 AATTTAATTCATA
1 AATTTAATTCATA
13636 AATTTAATTCATA
1 AATTTAATTCATA
13649 TTAGGACACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
AATTTAATTCATA
Found at i:14063 original size:20 final size:21
Alignment explanation
Indices: 14038--14076 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
14028 TCAAACAAGC
14038 AAATGAGCTCAA-TGAGCTGG
1 AAATGAGCTCAATTGAGCTGG
*
14058 AAATGAGCTGAATTGAGCT
1 AAATGAGCTCAATTGAGCT
14077 CAACGAGCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.23
Consensus pattern (21 bp):
AAATGAGCTCAATTGAGCTGG
Found at i:15417 original size:6 final size:6
Alignment explanation
Indices: 15408--15506 Score: 74
Period size: 6 Copynumber: 16.0 Consensus size: 6
15398 CATTTTCATA
* * * **
15408 TTTTTC TTTTTC AATTTTC TTTTCTTC ATTTTC TTTTTC TCTCAC TTTTTC
1 TTTTTC TTTTTC -TTTTTC -TTT-TTC TTTTTC TTTTTC TTTTTC TTTTTC
* * **
15459 GTTTTC TTTTTC TTTTT- TGTTTTC TTTTTC TTCTTC ACTTTC TTTTTC
1 TTTTTC TTTTTC TTTTTC T-TTTTC TTTTTC TTTTTC TTTTTC TTTTTC
15507 GAATTCATTA
Statistics
Matches: 70, Mismatches: 19, Indels: 8
0.72 0.20 0.08
Matches are distributed among these distances:
5 1 0.01
6 56 0.80
7 10 0.14
8 3 0.04
ACGTcount: A:0.05, C:0.20, G:0.02, T:0.73
Consensus pattern (6 bp):
TTTTTC
Found at i:20067 original size:6 final size:6
Alignment explanation
Indices: 20054--20089 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
20044 TCAATTTTTT
* *
20054 TCTCAA TATCAA TATCAA TCTCAA TCTCAA TCTCAA
1 TCTCAA TCTCAA TCTCAA TCTCAA TCTCAA TCTCAA
20090 ATTCTTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.39, C:0.28, G:0.00, T:0.33
Consensus pattern (6 bp):
TCTCAA
Found at i:20141 original size:21 final size:20
Alignment explanation
Indices: 20097--20141 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
20087 CAAATTCTTT
*
20097 TTTCTTTTTCTCACTCTCAT
1 TTTCTTTTTCTCACTCTCAA
* *
20117 TTTCTTTTTTTCTTCTCTCAA
1 TTTCTTTTTCTC-ACTCTCAA
20138 TTTC
1 TTTC
20142 ATTCAAGATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.09, C:0.27, G:0.00, T:0.64
Consensus pattern (20 bp):
TTTCTTTTTCTCACTCTCAA
Found at i:21062 original size:29 final size:29
Alignment explanation
Indices: 21029--21100 Score: 92
Period size: 29 Copynumber: 2.4 Consensus size: 29
21019 TTTCAATCAC
**
21029 TCTTTTTTTTTTCAATT-TTGATTTTTTTT
1 TCTTTTTTTTTT-AATTCTAAATTTTTTTT
21058 TCTTTTTTTTTTAATTCTAAATTTTTTTT
1 TCTTTTTTTTTTAATTCTAAATTTTTTTT
21087 TCTTCTTCTTTTTT
1 TCTT-TT-TTTTTT
21101 TTCTTCAATA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
28 4 0.11
29 26 0.68
30 2 0.05
31 6 0.16
ACGTcount: A:0.11, C:0.10, G:0.01, T:0.78
Consensus pattern (29 bp):
TCTTTTTTTTTTAATTCTAAATTTTTTTT
Found at i:21165 original size:13 final size:13
Alignment explanation
Indices: 21147--21193 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
21137 GAATACAAAC
21147 TTTTTTTTTTGAA
1 TTTTTTTTTTGAA
*
21160 TTTTTTTTTTCAAA
1 TTTTTTTTTT-GAA
* *
21174 ATTTTTTTTCGAA
1 TTTTTTTTTTGAA
21187 TTTTTTT
1 TTTTTTT
21194 ATATATTTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
13 18 0.64
14 10 0.36
ACGTcount: A:0.17, C:0.04, G:0.04, T:0.74
Consensus pattern (13 bp):
TTTTTTTTTTGAA
Found at i:23576 original size:13 final size:13
Alignment explanation
Indices: 23558--23583 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
23548 ACCTGAAAGC
23558 AATTTAATTCATA
1 AATTTAATTCATA
23571 AATTTAATTCATA
1 AATTTAATTCATA
23584 TTAGGACACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
AATTTAATTCATA
Found at i:23998 original size:20 final size:21
Alignment explanation
Indices: 23973--24011 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
23963 TCAAACAAGC
23973 AAATGAGCTCAA-TGAGCTGG
1 AAATGAGCTCAATTGAGCTGG
*
23993 AAATGAGCTGAATTGAGCT
1 AAATGAGCTCAATTGAGCT
24012 CAACGAGCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.23
Consensus pattern (21 bp):
AAATGAGCTCAATTGAGCTGG
Found at i:25542 original size:27 final size:27
Alignment explanation
Indices: 25512--25572 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
25502 GCTCTCAATA
**
25512 TCTTTTTGCA-TTCTTTCGTTCTCTTTT
1 TCTTTTTG-ATTTCTTTAATTCTCTTTT
*
25539 TCTTTTTGATTTCTTTAATTCTTTTTT
1 TCTTTTTGATTTCTTTAATTCTCTTTT
25566 TCTTTTT
1 TCTTTTT
25573 CTTTTTCTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 1 0.03
27 29 0.97
ACGTcount: A:0.07, C:0.16, G:0.05, T:0.72
Consensus pattern (27 bp):
TCTTTTTGATTTCTTTAATTCTCTTTT
Found at i:28131 original size:51 final size:49
Alignment explanation
Indices: 28001--28175 Score: 244
Period size: 49 Copynumber: 3.5 Consensus size: 49
27991 TCTATTGTGA
* * *
28001 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTAGCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * *
28050 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
* *
28100 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
28150 GGTCGA-ATGTGTAGTACTAAGTGCAG
1 GGTC-ACATGTGTAGTACTAAGTGCAG
28176 TGATAGAGGA
Statistics
Matches: 110, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
49 63 0.57
50 5 0.05
51 42 0.38
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.28
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:30246 original size:13 final size:12
Alignment explanation
Indices: 30215--30263 Score: 62
Period size: 12 Copynumber: 3.8 Consensus size: 12
30205 ATAGGTACGT
30215 AAAAAAAAGAGTTCG
1 AAAAAAAA-A-TT-G
30230 AAAAAAAAATTG
1 AAAAAAAAATTG
30242 AAAAAAAAATTG
1 AAAAAAAAATTG
30254 AAAAGAAAAA
1 AAAA-AAAAA
30264 AAATTGCATA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
12 17 0.52
13 7 0.21
14 1 0.03
15 8 0.24
ACGTcount: A:0.73, C:0.02, G:0.12, T:0.12
Consensus pattern (12 bp):
AAAAAAAAATTG
Found at i:32879 original size:271 final size:271
Alignment explanation
Indices: 32396--32936 Score: 1073
Period size: 271 Copynumber: 2.0 Consensus size: 271
32386 ATAGGTAACG
*
32396 GGTCAAGGTCCGCTTCTATCCTTCATCAAAATTCACCTTAAGCAATATAAGACTTGGGGCAATAC
1 GGTCAAGGTCCGCTTCTATCCTTCATCAAAATTCACCTTAAGCAATATAAGACTCGGGGCAATAC
32461 TTTTTAGTATTGAATCATTCTTAAAGTTTGAGTTCTTTATCCATTTCCATTTATTTATCATCTTT
66 TTTTTAGTATTGAATCATTCTTAAAGTTTGAGTTCTTTATCCATTTCCATTTATTTATCATCTTT
32526 GTAACTTAATTCTTTGTTAAACCGAACCTATCTTTCATCAAACCAAAACCCATCCTTTGAACCCA
131 GTAACTTAATTCTTTGTTAAACCGAACCTATCTTTCATCAAACCAAAACCCATCCTTTGAACCCA
32591 TTTTGCCTACCTTCCACTTATAAAACATTCAAACTCCATCTATCTACAAATTTGAACGAGCTTCT
196 TTTTGCCTACCTTCCACTTATAAAACATTCAAACTCCATCTATCTACAAATTTGAACGAGCTTCT
32656 CGTCGACGATT
261 CGTCGACGATT
32667 GGTCAAGGTCCGCTTCTATCCTTCATCAAAATTCACCTTAAGCAATATAAGACTCGGGGCAATAC
1 GGTCAAGGTCCGCTTCTATCCTTCATCAAAATTCACCTTAAGCAATATAAGACTCGGGGCAATAC
32732 TTTTTAGTATTGAATCATTCTTAAAGTTTGAGTTCTTTATCCATTTCCATTTATTTATCATCTTT
66 TTTTTAGTATTGAATCATTCTTAAAGTTTGAGTTCTTTATCCATTTCCATTTATTTATCATCTTT
32797 GTAACTTAATTCTTTGTTAAACCGAACCTATCTTTCATCAAACCAAAACCCATCCTTTGAACCCA
131 GTAACTTAATTCTTTGTTAAACCGAACCTATCTTTCATCAAACCAAAACCCATCCTTTGAACCCA
32862 TTTTGCCTACCTTCCACTTATAAAACATTCAAACTCCATCTATCTACAAATTTGAACGAGCTTCT
196 TTTTGCCTACCTTCCACTTATAAAACATTCAAACTCCATCTATCTACAAATTTGAACGAGCTTCT
32927 CGTCGACGAT
261 CGTCGACGAT
32937 CGGGCATCTT
Statistics
Matches: 269, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
271 269 1.00
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.37
Consensus pattern (271 bp):
GGTCAAGGTCCGCTTCTATCCTTCATCAAAATTCACCTTAAGCAATATAAGACTCGGGGCAATAC
TTTTTAGTATTGAATCATTCTTAAAGTTTGAGTTCTTTATCCATTTCCATTTATTTATCATCTTT
GTAACTTAATTCTTTGTTAAACCGAACCTATCTTTCATCAAACCAAAACCCATCCTTTGAACCCA
TTTTGCCTACCTTCCACTTATAAAACATTCAAACTCCATCTATCTACAAATTTGAACGAGCTTCT
CGTCGACGATT
Found at i:36771 original size:20 final size:20
Alignment explanation
Indices: 36748--36794 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
36738 GGGTTAAGAT
*
36748 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
36768 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
36788 TGAGCTG
1 TGAGCTG
36795 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:38478 original size:48 final size:48
Alignment explanation
Indices: 38423--38528 Score: 137
Period size: 48 Copynumber: 2.2 Consensus size: 48
38413 TTGTCTTTTC
*
38423 TTTCTTTTTCAATTT-TCTCT-TTTTCCTCACA-CTTTTGTTCAATCTCAA
1 TTTCTTTTTCAATTTCTCTCTCTTTT--TCACATCCTTT-TTCAATCTCAA
* *
38471 TTTCTTTTTCGATTTCTTTCTCTTTTTCACATCCTTTTTCAATCTCAA
1 TTTCTTTTTCAATTTCTCTCTCTTTTTCACATCCTTTTTCAATCTCAA
38519 TTTCTTTTTC
1 TTTCTTTTTC
38529 CATGACACTC
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 40 0.77
49 8 0.15
50 4 0.08
ACGTcount: A:0.14, C:0.25, G:0.02, T:0.59
Consensus pattern (48 bp):
TTTCTTTTTCAATTTCTCTCTCTTTTTCACATCCTTTTTCAATCTCAA
Found at i:41821 original size:20 final size:19
Alignment explanation
Indices: 41781--41841 Score: 63
Period size: 20 Copynumber: 3.1 Consensus size: 19
41771 ACCAATAAAA
41781 TAAATGAGCT-GAATTGTAGC
1 TAAATGAGCTCG-ATTG-AGC
41801 TAAATTGAGCTCGATTGAGC
1 TAAA-TGAGCTCGATTGAGC
41821 TGAAATGAGCTC-ATTTGAGC
1 T-AAATGAGCTCGA-TTGAGC
41841 T
1 T
41842 GGTCGGAGTT
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
19 1 0.03
20 22 0.59
21 13 0.35
22 1 0.03
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31
Consensus pattern (19 bp):
TAAATGAGCTCGATTGAGC
Found at i:43933 original size:18 final size:18
Alignment explanation
Indices: 43912--43946 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
43902 TTTTTCTTTT
43912 TCAATTT-TTTTCTCAATC
1 TCAATTTCTTTT-TCAATC
43930 TCAATTTCTTTTTCAAT
1 TCAATTTCTTTTTCAAT
43947 TTTCTTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.23, C:0.20, G:0.00, T:0.57
Consensus pattern (18 bp):
TCAATTTCTTTTTCAATC
Found at i:44852 original size:31 final size:28
Alignment explanation
Indices: 44814--44879 Score: 78
Period size: 31 Copynumber: 2.2 Consensus size: 28
44804 AGACTTTTCA
*
44814 TTTTTTTTAACTTGATTTTTTTGGTCACCTT
1 TTTTTTTTAACTCGATTTTTTT--TCA-CTT
**
44845 TTTTTTTTTGCTCGATTTTTTTTCACTT
1 TTTTTTTTAACTCGATTTTTTTTCACTT
44873 TTTTTTT
1 TTTTTTT
44880 GAATTTTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 10 0.31
29 3 0.09
31 19 0.59
ACGTcount: A:0.09, C:0.12, G:0.08, T:0.71
Consensus pattern (28 bp):
TTTTTTTTAACTCGATTTTTTTTCACTT
Found at i:44875 original size:12 final size:12
Alignment explanation
Indices: 44860--44903 Score: 61
Period size: 12 Copynumber: 3.6 Consensus size: 12
44850 TTTTGCTCGA
*
44860 TTTTTTTTCACT
1 TTTTTTTTCAAT
*
44872 TTTTTTTTGAAT
1 TTTTTTTTCAAT
44884 TTTTTTTTCGAAT
1 TTTTTTTTC-AAT
44897 TTTTTTT
1 TTTTTTT
44904 GATTTTTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
12 18 0.64
13 10 0.36
ACGTcount: A:0.11, C:0.07, G:0.05, T:0.77
Consensus pattern (12 bp):
TTTTTTTTCAAT
Found at i:44886 original size:11 final size:11
Alignment explanation
Indices: 44872--44915 Score: 61
Period size: 12 Copynumber: 3.8 Consensus size: 11
44862 TTTTTTCACT
44872 TTTTTTTTGAA
1 TTTTTTTTGAA
44883 TTTTTTTTTCGAA
1 -TTTTTTTT-GAA
*
44896 TTTTTTTTGAT
1 TTTTTTTTGAA
44907 TTTTTTTTG
1 TTTTTTTTG
44916 TTACTCCAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
11 11 0.37
12 16 0.53
13 3 0.10
ACGTcount: A:0.11, C:0.02, G:0.09, T:0.77
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:44887 original size:13 final size:13
Alignment explanation
Indices: 44871--44914 Score: 58
Period size: 13 Copynumber: 3.6 Consensus size: 13
44861 TTTTTTTCAC
44871 TTTTTTTTTGAAT
1 TTTTTTTTTGAAT
*
44884 TTTTTTTTCGAA-
1 TTTTTTTTTGAAT
44896 -TTTTTTTTG-AT
1 TTTTTTTTTGAAT
44907 TTTTTTTT
1 TTTTTTTT
44915 GTTACTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
10 1 0.04
11 8 0.30
12 7 0.26
13 11 0.41
ACGTcount: A:0.11, C:0.02, G:0.07, T:0.80
Consensus pattern (13 bp):
TTTTTTTTTGAAT
Found at i:46456 original size:20 final size:19
Alignment explanation
Indices: 46416--46476 Score: 63
Period size: 20 Copynumber: 3.1 Consensus size: 19
46406 ACCAATAAAA
46416 TAAATGAGCT-GAATTGTAGC
1 TAAATGAGCTCG-ATTG-AGC
46436 TAAATTGAGCTCGATTGAGC
1 TAAA-TGAGCTCGATTGAGC
46456 TGAAATGAGCTC-ATTTGAGC
1 T-AAATGAGCTCGA-TTGAGC
46476 T
1 T
46477 GGTCGGAGTT
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
19 1 0.03
20 22 0.59
21 13 0.35
22 1 0.03
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31
Consensus pattern (19 bp):
TAAATGAGCTCGATTGAGC
Found at i:47460 original size:20 final size:20
Alignment explanation
Indices: 47437--47483 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
47427 GGGTTAAGAT
*
47437 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
47457 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
47477 TGAGCTG
1 TGAGCTG
47484 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:53474 original size:22 final size:22
Alignment explanation
Indices: 53446--53517 Score: 64
Period size: 22 Copynumber: 3.4 Consensus size: 22
53436 TAACAAAGTT
53446 TTTATTAATGACCAGCAACTCA
1 TTTATTAATGACCAGCAACTCA
* *
53468 TTTATTAA--ACTA--AGA-TGA
1 TTTATTAATGACCAGCA-ACTCA
53486 GTTGTATTAATGACCAGCAACTCA
1 -TT-TATTAATGACCAGCAACTCA
53510 TTTATTAA
1 TTTATTAA
53518 ACTAAGAGGC
Statistics
Matches: 38, Mismatches: 4, Indels: 16
0.66 0.07 0.28
Matches are distributed among these distances:
18 3 0.08
19 3 0.08
20 9 0.24
22 17 0.45
23 3 0.08
24 3 0.08
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (22 bp):
TTTATTAATGACCAGCAACTCA
Found at i:57835 original size:13 final size:13
Alignment explanation
Indices: 57817--57841 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
57807 TGGTCATCAT
57817 GGTGTGAACACAA
1 GGTGTGAACACAA
57830 GGTGTGAACACA
1 GGTGTGAACACA
57842 TGATCAATAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.32, T:0.16
Consensus pattern (13 bp):
GGTGTGAACACAA
Found at i:61754 original size:14 final size:14
Alignment explanation
Indices: 61735--61779 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
61725 AACTCATCTT
*
61735 AGTTTAATTAAATG
1 AGTTTAATTTAATG
*
61749 AGTTT-ATTTGATG
1 AGTTTAATTTAATG
*
61762 AATTTAATTTAATG
1 AGTTTAATTTAATG
61776 AGTT
1 AGTT
61780 GCTTCTTTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
13 10 0.40
14 15 0.60
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.49
Consensus pattern (14 bp):
AGTTTAATTTAATG
Found at i:63204 original size:14 final size:14
Alignment explanation
Indices: 63182--63226 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 14
63172 TTAAAGAAGC
63182 AACTCATTAAATTA
1 AACTCATTAAATTA
*
63196 AATTCATTAAA-TA
1 AACTCATTAAATTA
*
63209 AACTCATTTAATTA
1 AACTCATTAAATTA
63223 AACT
1 AACT
63227 AAGATGAGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
13 11 0.41
14 16 0.59
ACGTcount: A:0.49, C:0.13, G:0.00, T:0.38
Consensus pattern (14 bp):
AACTCATTAAATTA
Found at i:63270 original size:42 final size:42
Alignment explanation
Indices: 63209--63314 Score: 194
Period size: 42 Copynumber: 2.5 Consensus size: 42
63199 TCATTAAATA
63209 AACTCATTTAATTAAACTAAGATGAGTTGTATTAATGACCAGC
1 AACTCATTT-ATTAAACTAAGATGAGTTGTATTAATGACCAGC
*
63252 AACTCATTTATTAAACTAAGATGAGTTGTATTAATGACCAGT
1 AACTCATTTATTAAACTAAGATGAGTTGTATTAATGACCAGC
63294 AACTCATTTATTAAACTAAGA
1 AACTCATTTATTAAACTAAGA
63315 GGCTTAAATG
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
42 53 0.85
43 9 0.15
ACGTcount: A:0.41, C:0.13, G:0.12, T:0.34
Consensus pattern (42 bp):
AACTCATTTATTAAACTAAGATGAGTTGTATTAATGACCAGC
Found at i:64643 original size:10 final size:11
Alignment explanation
Indices: 64618--64650 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
64608 AATGAGTGCA
64618 TGTTTAATAAG
1 TGTTTAATAAG
*
64629 TGTTTAA-ATG
1 TGTTTAATAAG
64639 TGTTTAATAAG
1 TGTTTAATAAG
64650 T
1 T
64651 TCAATTTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.48
Consensus pattern (11 bp):
TGTTTAATAAG
Found at i:67094 original size:10 final size:10
Alignment explanation
Indices: 67079--67116 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
67069 GCTCGTTTCC
*
67079 AGCTCACTCG
1 AGCTCAATCG
67089 AGCTCAAGTC-
1 AGCTCAA-TCG
67099 AGCTCAATCG
1 AGCTCAATCG
67109 AGCTCAAT
1 AGCTCAAT
67117 TTAGCTACAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.29, C:0.32, G:0.18, T:0.21
Consensus pattern (10 bp):
AGCTCAATCG
Found at i:67103 original size:20 final size:20
Alignment explanation
Indices: 67078--67115 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
67068 AGCTCGTTTC
*
67078 CAGCTCACTCGAGCTCAAGT
1 CAGCTCAATCGAGCTCAAGT
67098 CAGCTCAATCGAGCTCAA
1 CAGCTCAATCGAGCTCAA
67116 TTTAGCTACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.29, C:0.34, G:0.18, T:0.18
Consensus pattern (20 bp):
CAGCTCAATCGAGCTCAAGT
Found at i:67122 original size:20 final size:20
Alignment explanation
Indices: 67079--67139 Score: 63
Period size: 20 Copynumber: 3.0 Consensus size: 20
67069 GCTCGTTTCC
* * *
67079 AGCTCACTCGAGCTCAAGTC
1 AGCTCAATCGAGCTCAATTT
67099 AGCTCAATCGAGCTCAATTT
1 AGCTCAATCGAGCTCAATTT
67119 AGCTACAATTC-AGCTC-ATTT
1 AGCT-CAA-TCGAGCTCAATTT
67139 A
1 A
67140 TTTTATTGGT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 26 0.72
21 8 0.22
22 2 0.06
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (20 bp):
AGCTCAATCGAGCTCAATTT
Found at i:67133 original size:11 final size:10
Alignment explanation
Indices: 67089--67135 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
67079 AGCTCACTCG
*
67089 AGCTCAAGTC
1 AGCTCAATTC
67099 AGCTCAA-TC
1 AGCTCAATTC
*
67108 GAGCTCAATTT
1 -AGCTCAATTC
67119 AGCTACAATTC
1 AGCT-CAATTC
67130 AGCTCA
1 AGCTCA
67136 TTTATTTTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
9 2 0.06
10 20 0.62
11 10 0.31
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.26
Consensus pattern (10 bp):
AGCTCAATTC
Found at i:73039 original size:29 final size:30
Alignment explanation
Indices: 72938--73033 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
72928 AGCTCACTCC
72938 TAGCTCATA-TTCAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTCAGCTCACGAGCTAAACCT
* * * *
72968 TAGCTCAACTTCAGCT-AGGAGTTTAATCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
* * *
72997 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
73027 TAGCTCA
1 TAGCTCA
73034 TTTTAGTTTA
Statistics
Matches: 53, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
29 24 0.45
30 29 0.55
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCACGAGCTAAACCT
Found at i:74886 original size:22 final size:22
Alignment explanation
Indices: 74856--74898 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
74846 TTTGGTATTT
74856 GGGAATTGGTACGAAATGGTAG
1 GGGAATTGGTACGAAATGGTAG
*
74878 GGGATTTGGTACGAAATGGTA
1 GGGAATTGGTACGAAATGGTA
74899 ATGGTTCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.05, G:0.40, T:0.26
Consensus pattern (22 bp):
GGGAATTGGTACGAAATGGTAG
Found at i:80172 original size:23 final size:22
Alignment explanation
Indices: 80146--80197 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
80136 GAAAATTGAA
*
80146 AAAAGAAGTT-GAAGAAAGAAGAG
1 AAAAGAAGTTAGAA-AAAGAA-AC
80169 AAAATG-AGTTAGAAAAAGAAAC
1 AAAA-GAAGTTAGAAAAAGAAAC
80191 AAAAGAA
1 AAAAGAA
80198 AAAGACGAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 1 0.04
22 6 0.24
23 14 0.56
24 4 0.16
ACGTcount: A:0.65, C:0.02, G:0.23, T:0.10
Consensus pattern (22 bp):
AAAAGAAGTTAGAAAAAGAAAC
Found at i:89974 original size:29 final size:30
Alignment explanation
Indices: 89873--89968 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
89863 AGCTCACTCC
89873 TAGCTCATA-TTCAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTCAGCTCACGAGCTAAACCT
* * * *
89903 TAGCTCAACTTCAGCT-AGGAGTTTAATCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
* * *
89932 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
89962 TAGCTCA
1 TAGCTCA
89969 TTTTAGTTTA
Statistics
Matches: 53, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
29 24 0.45
30 29 0.55
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCACGAGCTAAACCT
Found at i:97707 original size:15 final size:13
Alignment explanation
Indices: 97669--97710 Score: 57
Period size: 13 Copynumber: 3.1 Consensus size: 13
97659 ACCTCTTGTA
*
97669 AAAAGAAAATGAG
1 AAAAGAAAAAGAG
97682 AAAAGAAAAAGATG
1 AAAAGAAAAAGA-G
97696 AAAAGCAAAAAGAG
1 AAAAG-AAAAAGAG
97710 A
1 A
97711 TCAAAAGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 11 0.42
14 8 0.31
15 7 0.27
ACGTcount: A:0.71, C:0.02, G:0.21, T:0.05
Consensus pattern (13 bp):
AAAAGAAAAAGAG
Found at i:97721 original size:15 final size:15
Alignment explanation
Indices: 97682--97725 Score: 54
Period size: 17 Copynumber: 2.9 Consensus size: 15
97672 AGAAAATGAG
*
97682 AAAAGAAAA-AGATG
1 AAAAGAAAAGAGATC
97696 AAAAGCAAAAAGAGATC
1 AAAAG--AAAAGAGATC
97713 AAAAGAAAAGAGA
1 AAAAGAAAAGAGA
97726 GGCAAGAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 5 0.19
15 8 0.31
16 4 0.15
17 9 0.35
ACGTcount: A:0.70, C:0.05, G:0.20, T:0.05
Consensus pattern (15 bp):
AAAAGAAAAGAGATC
Found at i:98188 original size:14 final size:14
Alignment explanation
Indices: 98169--98213 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
98159 AACTCATCTT
*
98169 AGTTTAATTAAATG
1 AGTTTAATTTAATG
*
98183 AGTTT-ATTTGATG
1 AGTTTAATTTAATG
*
98196 AATTTAATTTAATG
1 AGTTTAATTTAATG
98210 AGTT
1 AGTT
98214 GCTTCTTTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
13 10 0.40
14 15 0.60
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.49
Consensus pattern (14 bp):
AGTTTAATTTAATG
Found at i:99228 original size:29 final size:29
Alignment explanation
Indices: 99195--99254 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
99185 ATAACCAAAC
*
99195 CTACAAAAACTTTATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
* *
99224 CTACATAAACTTCATATCCATAAATCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
99253 CT
1 CT
99255 TTGAATCCTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.42, C:0.28, G:0.00, T:0.30
Consensus pattern (29 bp):
CTACAAAAACTTCATATCCATAAACCCAT
Found at i:99247 original size:15 final size:15
Alignment explanation
Indices: 99201--99247 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
99191 AAACCTACAA
*
99201 AAACTTTATATCCAT
1 AAACTTCATATCCAT
* * *
99216 AAAC-CCATCTACAT
1 AAACTTCATATCCAT
99230 AAACTTCATATCCAT
1 AAACTTCATATCCAT
99245 AAA
1 AAA
99248 TCCATCTTTG
Statistics
Matches: 24, Mismatches: 7, Indels: 2
0.73 0.21 0.06
Matches are distributed among these distances:
14 10 0.42
15 14 0.58
ACGTcount: A:0.45, C:0.26, G:0.00, T:0.30
Consensus pattern (15 bp):
AAACTTCATATCCAT
Found at i:102962 original size:22 final size:22
Alignment explanation
Indices: 102934--102977 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
102924 TTTTGAACCA
102934 TTACCATTTCGTACCAAATCCC
1 TTACCATTTCGTACCAAATCCC
*
102956 TTACCATTTCGTACCAATTCCC
1 TTACCATTTCGTACCAAATCCC
102978 AAATACCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.25, C:0.36, G:0.05, T:0.34
Consensus pattern (22 bp):
TTACCATTTCGTACCAAATCCC
Found at i:104362 original size:20 final size:20
Alignment explanation
Indices: 104337--104391 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
104327 TGTGGTTCAA
*
104337 CTCATTCGAGCTCAAGTTAG
1 CTCATTCGAGCTCAAGTCAG
*
104357 CTCATTCGTGCTCAAGTCAG
1 CTCATTCGAGCTCAAGTCAG
*
104377 CTCATTCAAGCTCAA
1 CTCATTCGAGCTCAA
104392 TTTAACTCGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (20 bp):
CTCATTCGAGCTCAAGTCAG
Found at i:106798 original size:12 final size:12
Alignment explanation
Indices: 106767--106813 Score: 64
Period size: 12 Copynumber: 4.1 Consensus size: 12
106757 GGTATTACGG
106767 TATTGTAAAAAAA
1 TATTG-AAAAAAA
106780 -A-TG-AAAAAA
1 TATTGAAAAAAA
106789 TATTGAAAAAAA
1 TATTGAAAAAAA
106801 TATTGAAAAAAA
1 TATTGAAAAAAA
106813 T
1 T
106814 CCGAAAAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
9 6 0.19
10 1 0.03
11 4 0.13
12 20 0.65
ACGTcount: A:0.66, C:0.00, G:0.09, T:0.26
Consensus pattern (12 bp):
TATTGAAAAAAA
Found at i:107857 original size:21 final size:21
Alignment explanation
Indices: 107833--107875 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
107823 TGAGAGAAGA
* *
107833 AAAAAGAAATGAGAGAAAAAG
1 AAAAAGAAATAAAAGAAAAAG
107854 AAAAAGAAATAAAAGAAAAAG
1 AAAAAGAAATAAAAGAAAAAG
107875 A
1 A
107876 TGAAAATGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.05
Consensus pattern (21 bp):
AAAAAGAAATAAAAGAAAAAG
Found at i:112499 original size:13 final size:12
Alignment explanation
Indices: 112484--112528 Score: 81
Period size: 12 Copynumber: 3.7 Consensus size: 12
112474 AAAAAAAAGG
112484 AAAAAAAAATTC
1 AAAAAAAAATTC
112496 GAAAAAAAAATTC
1 -AAAAAAAAATTC
112509 AAAAAAAAATTC
1 AAAAAAAAATTC
112521 AAAAAAAA
1 AAAAAAAA
112529 TTTGTATTCA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
12 20 0.62
13 12 0.38
ACGTcount: A:0.78, C:0.07, G:0.02, T:0.13
Consensus pattern (12 bp):
AAAAAAAAATTC
Found at i:113548 original size:17 final size:15
Alignment explanation
Indices: 113528--113566 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 15
113518 GCGAGCGAGA
113528 AAATGAACATGAAAAAG
1 AAATGAA-A-GAAAAAG
113545 AAATGAAAGAAAAAG
1 AAATGAAAGAAAAAG
113560 AAGATGA
1 AA-ATGA
113567 GTGGGAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 9 0.43
16 5 0.24
17 7 0.33
ACGTcount: A:0.67, C:0.03, G:0.21, T:0.10
Consensus pattern (15 bp):
AAATGAAAGAAAAAG
Found at i:114671 original size:13 final size:13
Alignment explanation
Indices: 114653--114677 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
114643 GTATTGATCA
114653 TGTGTTCACACCT
1 TGTGTTCACACCT
114666 TGTGTTCACACC
1 TGTGTTCACACC
114678 ATGATGACCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTGTTCACACCT
Found at i:116734 original size:20 final size:20
Alignment explanation
Indices: 116709--116763 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
116699 TGTGGTTCAA
*
116709 CTCATTCGAGCTCAAGTTAG
1 CTCATTCGAGCTCAAGTCAG
*
116729 CTCATTCGTGCTCAAGTCAG
1 CTCATTCGAGCTCAAGTCAG
*
116749 CTCATTCAAGCTCAA
1 CTCATTCGAGCTCAA
116764 TTTAACTCGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (20 bp):
CTCATTCGAGCTCAAGTCAG
Found at i:121946 original size:20 final size:20
Alignment explanation
Indices: 121923--121969 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
121913 GGGTTAAGAT
*
121923 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
121943 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
121963 TGAGCTG
1 TGAGCTG
121970 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:124255 original size:20 final size:20
Alignment explanation
Indices: 124232--124285 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
124222 AGCTAAAGTA
124232 AGCTAAATTTAGCTCACATG
1 AGCTAAATTTAGCTCACATG
* ***
124252 AGCTTAATTTAGCTCGTTTG
1 AGCTAAATTTAGCTCACATG
*
124272 AGCTCAATTTAGCT
1 AGCTAAATTTAGCT
124286 GGGAAAAACT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.37
Consensus pattern (20 bp):
AGCTAAATTTAGCTCACATG
Found at i:125573 original size:17 final size:18
Alignment explanation
Indices: 125551--125584 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
125541 ACAACACTCC
*
125551 TTTCTT-CTTCACTCTCG
1 TTTCTTCCTTCAATCTCG
125568 TTTCTTCCTTCAATCTC
1 TTTCTTCCTTCAATCTC
125585 ACTCTCTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.09, C:0.35, G:0.03, T:0.53
Consensus pattern (18 bp):
TTTCTTCCTTCAATCTCG
Found at i:125691 original size:15 final size:16
Alignment explanation
Indices: 125666--125697 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
125656 TATCTCACAC
125666 TCATCTTCTTTTTCTT
1 TCATCTTCTTTTTCTT
125682 TCAT-TTCTTTTTCTT
1 TCATCTTCTTTTTCTT
125697 T
1 T
125698 TTCATTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.06, C:0.22, G:0.00, T:0.72
Consensus pattern (16 bp):
TCATCTTCTTTTTCTT
Found at i:126681 original size:13 final size:13
Alignment explanation
Indices: 126665--126726 Score: 63
Period size: 14 Copynumber: 4.6 Consensus size: 13
126655 TTTTGCTCGA
*
126665 TTTTTTTTTC-AC
1 TTTTTTTTTCAAT
*
126677 TTTTTTTTTGAAT
1 TTTTTTTTTCAAT
*
126690 TTTTTTTCAATCAAT
1 TTTTTTT--TTCAAT
126705 TTTTTTTTTCGAAT
1 TTTTTTTTTC-AAT
126719 TTTTTTTT
1 TTTTTTTT
126727 GATTTTTTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
12 9 0.22
13 10 0.24
14 11 0.27
15 11 0.27
ACGTcount: A:0.15, C:0.08, G:0.03, T:0.74
Consensus pattern (13 bp):
TTTTTTTTTCAAT
Found at i:126731 original size:11 final size:12
Alignment explanation
Indices: 126664--126738 Score: 71
Period size: 12 Copynumber: 5.9 Consensus size: 12
126654 TTTTTGCTCG
*
126664 ATTTTTTTTTCA
1 ATTTTTTTTTGA
*
126676 CTTTTTTTTTGA
1 ATTTTTTTTTGA
*
126688 ATTTTTTTTCAATCA
1 ATTTTTTTT---TGA
126703 ATTTTTTTTTTCGA
1 A-TTTTTTTTT-GA
126717 ATTTTTTTTTG-
1 ATTTTTTTTTGA
126728 ATTTTTTTTTG
1 ATTTTTTTTTG
126739 TTACTCCAAT
Statistics
Matches: 53, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
11 11 0.21
12 19 0.36
13 10 0.19
14 2 0.04
15 3 0.06
16 8 0.15
ACGTcount: A:0.15, C:0.07, G:0.05, T:0.73
Consensus pattern (12 bp):
ATTTTTTTTTGA
Found at i:128269 original size:20 final size:20
Alignment explanation
Indices: 128246--128299 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
128236 AGCTAAAGTA
128246 AGCTAAATTTAGCTCACATG
1 AGCTAAATTTAGCTCACATG
* ***
128266 AGCTTAATTTAGCTCGTTTG
1 AGCTAAATTTAGCTCACATG
*
128286 AGCTCAATTTAGCT
1 AGCTAAATTTAGCT
128300 GGGAAAAACT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.37
Consensus pattern (20 bp):
AGCTAAATTTAGCTCACATG
Found at i:130338 original size:10 final size:9
Alignment explanation
Indices: 130325--130359 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
130315 TTTTCACTTT
130325 TTTTTTGTTC
1 TTTTTT-TTC
*
130335 TTTTTTTAC
1 TTTTTTTTC
130344 TTTTTTTTC
1 TTTTTTTTC
130353 TTTTTTT
1 TTTTTTT
130360 GCTCACTTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 17 0.74
10 6 0.26
ACGTcount: A:0.03, C:0.09, G:0.03, T:0.86
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:131917 original size:20 final size:20
Alignment explanation
Indices: 131894--131940 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
131884 GGGTTAAGAT
*
131894 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
131914 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
131934 TGAGCTG
1 TGAGCTG
131941 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:135204 original size:21 final size:22
Alignment explanation
Indices: 135178--135221 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
135168 AAACGAGCTC
135178 GTTGAGCTAAGTTGAG-TTGAA
1 GTTGAGCTAAGTTGAGCTTGAA
* *
135199 GTTGAGCTGATTTGAGCTTGAA
1 GTTGAGCTAAGTTGAGCTTGAA
135221 G
1 G
135222 GAGTATGCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.25, C:0.07, G:0.34, T:0.34
Consensus pattern (22 bp):
GTTGAGCTAAGTTGAGCTTGAA
Found at i:142016 original size:10 final size:11
Alignment explanation
Indices: 141976--142031 Score: 58
Period size: 11 Copynumber: 4.8 Consensus size: 11
141966 CCGTATGCAA
*
141976 ATTTTTTTTCAA
1 ATTTTTTTTC-G
*
141988 ATTTTTTTTTCA
1 A-TTTTTTTTCG
142000 ATTTTTTTTTCG
1 A-TTTTTTTTCG
*
142012 ATTTTTTTTTG
1 ATTTTTTTTCG
142023 ATTTTTTTT
1 ATTTTTTTT
142032 GAATCTACAA
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
11 18 0.44
12 14 0.34
13 9 0.22
ACGTcount: A:0.14, C:0.05, G:0.04, T:0.77
Consensus pattern (11 bp):
ATTTTTTTTCG
Found at i:142025 original size:11 final size:12
Alignment explanation
Indices: 141977--142031 Score: 76
Period size: 12 Copynumber: 4.6 Consensus size: 12
141967 CGTATGCAAA
*
141977 TTTTTTTTCAAAT
1 TTTTTTTTC-GAT
*
141990 TTTTTTTTCAAT
1 TTTTTTTTCGAT
142002 TTTTTTTTCGAT
1 TTTTTTTTCGAT
142014 TTTTTTTT-GAT
1 TTTTTTTTCGAT
142025 TTTTTTT
1 TTTTTTT
142032 GAATCTACAA
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
11 10 0.24
12 22 0.54
13 9 0.22
ACGTcount: A:0.13, C:0.05, G:0.04, T:0.78
Consensus pattern (12 bp):
TTTTTTTTCGAT
Found at i:142741 original size:30 final size:30
Alignment explanation
Indices: 142707--142803 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
142697 AGCTCACTCC
142707 TAGCTCATA-TTTAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTTAGCTCACGAGCTAAACCT
* * * * * *
142737 TAGCTCAACTTCAGCTTAAGAGTTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* **
142767 CAGCTCAACTTTAGCTCACGAGCTAAAATT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
142797 TAGCTCA
1 TAGCTCA
142804 TTTTAGTTTA
Statistics
Matches: 50, Mismatches: 16, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
29 1 0.02
30 49 0.98
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:144422 original size:14 final size:14
Alignment explanation
Indices: 144403--144433 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
144393 GTTCGTAACG
144403 AAAAAAAAATCAAA
1 AAAAAAAAATCAAA
144417 AAAAAAAAATCAAA
1 AAAAAAAAATCAAA
144431 AAA
1 AAA
144434 TTTTTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.87, C:0.06, G:0.00, T:0.06
Consensus pattern (14 bp):
AAAAAAAAATCAAA
Found at i:144543 original size:12 final size:12
Alignment explanation
Indices: 144525--144584 Score: 65
Period size: 12 Copynumber: 5.2 Consensus size: 12
144515 AAGAAATTTA
*
144525 GAAAAAAAATTC
1 GAAAAAAAAATC
144537 -AAAAAAAAATC
1 GAAAAAAAAATC
144548 GAAAAAAAAA--
1 GAAAAAAAAATC
144558 GAAAAAAAAAGT-
1 GAAAAAAAAA-TC
144570 GACAAAAAAAATC
1 GA-AAAAAAAATC
144583 GA
1 GA
144585 GTTAAAAAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
10 10 0.24
11 10 0.24
12 12 0.29
13 10 0.24
ACGTcount: A:0.75, C:0.07, G:0.10, T:0.08
Consensus pattern (12 bp):
GAAAAAAAAATC
Found at i:144562 original size:22 final size:23
Alignment explanation
Indices: 144537--144580 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
144527 AAAAAAATTC
144537 AAAAAAAAA-TCGA-AAAAAAAAG
1 AAAAAAAAAGT-GACAAAAAAAAG
144559 AAAAAAAAAGTGACAAAAAAAA
1 AAAAAAAAAGTGACAAAAAAAA
144581 TCGAGTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.82, C:0.05, G:0.09, T:0.05
Consensus pattern (23 bp):
AAAAAAAAAGTGACAAAAAAAAG
Found at i:144604 original size:13 final size:12
Alignment explanation
Indices: 144549--144616 Score: 57
Period size: 13 Copynumber: 5.2 Consensus size: 12
144539 AAAAAAATCG
144549 AAAAAAAA-AGA
1 AAAAAAAAGAGA
*
144560 AAAAAAAAGTGA
1 AAAAAAAAGAGA
144572 CAAAAAAAATCGAGTTA
1 -AAAAAAAA--GAG--A
144589 AAAAAAAAGAAGA
1 AAAAAAAAG-AGA
*
144602 AAAAAAAAGTGA
1 AAAAAAAAGAGA
144614 AAA
1 AAA
144617 GTCTTGTGAG
Statistics
Matches: 47, Mismatches: 3, Indels: 13
0.75 0.05 0.21
Matches are distributed among these distances:
11 8 0.17
12 7 0.15
13 18 0.38
14 1 0.02
15 4 0.09
16 8 0.17
17 1 0.02
ACGTcount: A:0.76, C:0.03, G:0.13, T:0.07
Consensus pattern (12 bp):
AAAAAAAAGAGA
Found at i:144615 original size:12 final size:12
Alignment explanation
Indices: 144526--144616 Score: 62
Period size: 12 Copynumber: 7.2 Consensus size: 12
144516 AGAAATTTAG
* *
144526 AAAAAAAATTCA
1 AAAAAAAAGTGA
144538 AAAAAAAA-TCGA
1 AAAAAAAAGT-GA
144550 AAAAAAAA--GA
1 AAAAAAAAGTGA
144560 AAAAAAAAGTGACA
1 AAAAAAAAGTG--A
*
144574 AAAAAAATCGAGTTA
1 AAAAAAA---AGTGA
*
144589 AAAAAAAAGAAGA
1 AAAAAAAAG-TGA
144602 AAAAAAAAGTGA
1 AAAAAAAAGTGA
144614 AAA
1 AAA
144617 GTCTTGTGAG
Statistics
Matches: 65, Mismatches: 5, Indels: 18
0.74 0.06 0.20
Matches are distributed among these distances:
10 10 0.15
11 1 0.02
12 25 0.38
13 10 0.15
14 8 0.12
15 8 0.12
17 3 0.05
ACGTcount: A:0.76, C:0.04, G:0.11, T:0.09
Consensus pattern (12 bp):
AAAAAAAAGTGA
Found at i:145531 original size:21 final size:21
Alignment explanation
Indices: 145501--145563 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
145491 AAGAGAAAAC
145501 AAAGAAAAGAAAAGAAAGAGAA
1 AAAG-AAAGAAAAGAAAGAGAA
* * *
145523 AAAGCAAGAGAAGAAAAAGAA
1 AAAGAAAGAAAAGAAAGAGAA
* *
145544 AATGAAATAAAAGAAAGAGA
1 AAAGAAAGAAAAGAAAGAGA
145564 GGCAAGAGGC
Statistics
Matches: 33, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
21 29 0.88
22 4 0.12
ACGTcount: A:0.73, C:0.02, G:0.22, T:0.03
Consensus pattern (21 bp):
AAAGAAAGAAAAGAAAGAGAA
Found at i:145641 original size:11 final size:12
Alignment explanation
Indices: 145609--145639 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
145599 TTGAGAGAAC
145609 TTGAAAAAGCCT
1 TTGAAAAAGCCT
145621 TTGAAAAAGCCT
1 TTGAAAAAGCCT
145633 TTGAAAA
1 TTGAAAA
145640 GCAAAAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (12 bp):
TTGAAAAAGCCT
Found at i:147847 original size:30 final size:30
Alignment explanation
Indices: 147813--147909 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
147803 AGCTCACTCC
147813 TAGCTCATA-TTTAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTTAGCTCACGAGCTAAACCT
* * * * * *
147843 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* *
147873 CAGCTCAACTTTAGCTCACGAGCTAAAACT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
147903 TAGCTCA
1 TAGCTCA
147910 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:150869 original size:21 final size:22
Alignment explanation
Indices: 150843--150886 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
150833 AAACGAGCTC
150843 GTTGAGCTAAGTTGAG-TTGAA
1 GTTGAGCTAAGTTGAGCTTGAA
* *
150864 GTTGAGCTGATTTGAGCTTGAA
1 GTTGAGCTAAGTTGAGCTTGAA
150886 G
1 G
150887 GAGTATGCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.25, C:0.07, G:0.34, T:0.34
Consensus pattern (22 bp):
GTTGAGCTAAGTTGAGCTTGAA
Found at i:153039 original size:39 final size:39
Alignment explanation
Indices: 152985--153100 Score: 205
Period size: 39 Copynumber: 3.0 Consensus size: 39
152975 TTCAGTGATG
*
152985 TATATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
153024 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* *
153063 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAA
153101 ATATGCCCGG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:153127 original size:78 final size:78
Alignment explanation
Indices: 152985--153128 Score: 182
Period size: 78 Copynumber: 1.8 Consensus size: 78
152975 TTCAGTGATG
* * * * ** *
152985 TATATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGCAGGC
1 TATATCCAGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATACCCGGACTTAAAGTCCACAGGC
153050 TATGTGCTGGAAT
66 TATGTGCTGGAAT
* * *
153063 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATGCCCGGGC-TAAAGTCCCACAGG
1 TATATCCAGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATACCCGGACTTAAAGT-CCACAGG
153127 CT
65 CT
153129 TCGAGCTGGT
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
77 4 0.07
78 51 0.93
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (78 bp):
TATATCCAGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATACCCGGACTTAAAGTCCACAGGC
TATGTGCTGGAAT
Found at i:158705 original size:13 final size:13
Alignment explanation
Indices: 158666--158714 Score: 53
Period size: 13 Copynumber: 3.5 Consensus size: 13
158656 ACTCTCCTCA
158666 TTCTTTTCTTTCTTT
1 TTCTTTTC--TCTTT
*
158681 TTCTTTCACTCTTT
1 TTCTTT-TCTCTTT
*
158695 TTGTTTTCTCTTT
1 TTCTTTTCTCTTT
158708 TTCTTTT
1 TTCTTTT
158715 TCTCGATCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
13 12 0.41
14 10 0.34
15 6 0.21
16 1 0.03
ACGTcount: A:0.02, C:0.20, G:0.02, T:0.76
Consensus pattern (13 bp):
TTCTTTTCTCTTT
Found at i:158715 original size:14 final size:14
Alignment explanation
Indices: 158666--158718 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 14
158656 ACTCTCCTCA
*
158666 TTCTTTTCTTTCTTT
1 TTCTTTT-TCTCTTT
**
158681 TTCTTTCACTCTTT
1 TTCTTTTTCTCTTT
*
158695 TT-GTTTTCTCTTT
1 TTCTTTTTCTCTTT
158708 TTCTTTTTCTC
1 TTCTTTTTCTC
158719 GATCAATAGA
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
13 10 0.33
14 14 0.47
15 6 0.20
ACGTcount: A:0.02, C:0.23, G:0.02, T:0.74
Consensus pattern (14 bp):
TTCTTTTTCTCTTT
Done.