Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53248092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1300000 characters in sequence are not A, C, G, or T
File 101 of 175
Found at i:32148372 original size:98 final size:97
Alignment explanation
Indices: 32148178--32148385 Score: 371
Period size: 100 Copynumber: 2.1 Consensus size: 97
32148168 ATTGCGTGTT
32148178 TTGGACTTAGGGACTAAATTGCATAGAAGTGAAATATTGGGCTAATTTGTAAAAAATTATAAAAG
1 TTGGACTTAGGGACTAAATTGCATAGAAGTGAAATATTGGGCTAATTTGTAAAAAATTATAAAAG
32148243 GACTTAAATGCATAAAATGAGTTAATTTTTTTG
66 GACTTAAATGCATAAAATGAGTTAA-TTTTTTG
32148276 TTGGACTTAGGGACTAAATTGCATAGAAGTGAAATATTGGGCTAATTTTGTAAAAAAATTATAAA
1 TTGGACTTAGGGACTAAATTGCATAGAAGTGAAATATTGGGCTAA-TTTGT-AAAAAATTATAAA
32148341 AGGACTTAAATGCATAAAATGAGTTAATTTTTTTG
64 AGGACTTAAATGCATAAAATGAGTTAA-TTTTTTG
*
32148376 TTGGAATTAG
1 TTGGACTTAG
32148386 TTAATTGAAT
Statistics
Matches: 107, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
98 45 0.42
99 5 0.05
100 57 0.53
ACGTcount: A:0.39, C:0.06, G:0.20, T:0.35
Consensus pattern (97 bp):
TTGGACTTAGGGACTAAATTGCATAGAAGTGAAATATTGGGCTAATTTGTAAAAAATTATAAAAG
GACTTAAATGCATAAAATGAGTTAATTTTTTG
Found at i:32151419 original size:21 final size:21
Alignment explanation
Indices: 32151386--32151447 Score: 88
Period size: 21 Copynumber: 3.0 Consensus size: 21
32151376 ATGGTCTACA
* *
32151386 TACATGGGTATGTGAAGTAGT
1 TACACGGGCATGTGAAGTAGT
32151407 TACACGGGCATGTGAAGTAGT
1 TACACGGGCATGTGAAGTAGT
* *
32151428 TACGCGGGCATGTGGAGTAG
1 TACACGGGCATGTGAAGTAG
32151448 CCATACGGCC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.26, C:0.11, G:0.37, T:0.26
Consensus pattern (21 bp):
TACACGGGCATGTGAAGTAGT
Found at i:32153536 original size:41 final size:41
Alignment explanation
Indices: 32153481--32153562 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
32153471 TCAGCAGATA
*
32153481 AAAGCTGAACATCAAGTACCATTAGGATTGTTACAACCTAT
1 AAAGCTGAACATCAAGTACCATCAGGATTGTTACAACCTAT
32153522 AAAGCTGAACATCAAGTACCATCAGGATTGTTACAACCTAT
1 AAAGCTGAACATCAAGTACCATCAGGATTGTTACAACCTAT
32153563 CACGATTCAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.39, C:0.21, G:0.15, T:0.26
Consensus pattern (41 bp):
AAAGCTGAACATCAAGTACCATCAGGATTGTTACAACCTAT
Found at i:32155300 original size:6 final size:6
Alignment explanation
Indices: 32155289--32155321 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
32155279 GTATTGCAAT
*
32155289 TTTCCA TTTCCA TTTCCA TTTCCA TTTCTA TTT
1 TTTCCA TTTCCA TTTCCA TTTCCA TTTCCA TTT
32155322 TTGAAAACCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.15, C:0.27, G:0.00, T:0.58
Consensus pattern (6 bp):
TTTCCA
Found at i:32156639 original size:25 final size:25
Alignment explanation
Indices: 32156605--32156676 Score: 108
Period size: 25 Copynumber: 2.9 Consensus size: 25
32156595 AACCAAGCCA
*
32156605 AGCCTTTGTGACGAATTATCTAAAG
1 AGCCTTTGTGATGAATTATCTAAAG
* *
32156630 AGCCTTTGTGGTGAATTATCTGAAG
1 AGCCTTTGTGATGAATTATCTAAAG
*
32156655 AGCCTTTGTGATGTATTATCTA
1 AGCCTTTGTGATGAATTATCTA
32156677 GAACGTTTGT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.38
Consensus pattern (25 bp):
AGCCTTTGTGATGAATTATCTAAAG
Found at i:32177879 original size:66 final size:66
Alignment explanation
Indices: 32177773--32177896 Score: 176
Period size: 66 Copynumber: 1.9 Consensus size: 66
32177763 TTTCTGCACG
* *
32177773 AATGTCACTGCATGAATTAATTCTACACTACGTCCAGAATTGTCACCGCAGTTGACAGATATTTG
1 AATGTCACTACATGAATTAATTCCACACTACGTCCAGAATTGTCACCGCAGTTGACAGATATTTG
32177838 C
66 C
* * * * **
32177839 AATGTCGCTACATGAGTTAATTCCAGATTACGTCCAGAATTGTTGCCGCAGTTGACAG
1 AATGTCACTACATGAATTAATTCCACACTACGTCCAGAATTGTCACCGCAGTTGACAG
32177897 CTGTCTGATA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
66 50 1.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (66 bp):
AATGTCACTACATGAATTAATTCCACACTACGTCCAGAATTGTCACCGCAGTTGACAGATATTTG
C
Found at i:32180386 original size:50 final size:50
Alignment explanation
Indices: 32180266--32180506 Score: 293
Period size: 50 Copynumber: 4.7 Consensus size: 50
32180256 GAGGATGAAA
*
32180266 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATGAGAGG
* *
32180322 TCCCATATAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
*
32180372 TCCCATGTAAGACCATGTCTGAGACATGGCATTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
** * * * **
32180422 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCTATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* * * *
32180472 TCTCATGTAAGACCATATTTGGGATATGGCATTGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGG
32180507 TAGTACAAGA
Statistics
Matches: 164, Mismatches: 21, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
50 125 0.76
53 3 0.02
55 1 0.01
56 35 0.21
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.24
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
Found at i:32185154 original size:6 final size:6
Alignment explanation
Indices: 32185143--32185175 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
32185133 TTCTTAGAAA
*
32185143 TTTTAT TTTTAT TTTTAT TTTTAT TTTTCT TTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT
32185176 CAAAAGTCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.12, C:0.03, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTAT
Found at i:32189560 original size:20 final size:19
Alignment explanation
Indices: 32189535--32189586 Score: 61
Period size: 18 Copynumber: 2.7 Consensus size: 19
32189525 ACATATAATT
32189535 ATTATATTTTAATAAATATA
1 ATTATA-TTTAATAAATATA
*
32189555 ATTATA-TTAATTAATATA
1 ATTATATTTAATAAATATA
*
32189573 TTTATAATTTAATA
1 ATTAT-ATTTAATA
32189587 CATTTGGGTC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 15 0.56
19 1 0.04
20 11 0.41
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (19 bp):
ATTATATTTAATAAATATA
Found at i:32196982 original size:101 final size:98
Alignment explanation
Indices: 32196877--32197221 Score: 409
Period size: 91 Copynumber: 3.6 Consensus size: 98
32196867 TATTATTAAG
32196877 AATTATATGAAATTATATATCATTATTAAATTATATTTAATATTAATTATTTTAAATTATATAAA
1 AATTATATGAAATTATATAT-ATTATTAAATTATATTTAATATTAATTATTTTAAATTATATAAA
32196942 TTCATATAAGAAAATTTATTATCAAT-A----AT
65 TTCATATAAGAAAATTTATTATCAATAATTTTAT
32196971 --TT-TATGAAATTATATATCATTATTAAATTATATTTAATATTAATTATTTTAAATTATATAAA
1 AATTATATGAAATTATATAT-ATTATTAAATTATATTTAATATTAATTATTTTAAATTATATAAA
*
32197033 TTCATATAAGAAAATTTATTATCAA-GA----AT
65 TTCATATAAGAAAATTTATTATCAATAATTTTAT
* *
32197062 --TT-TATGAAATTATATATTATTATTAAATTATATTTAATAATAATTATTTTAAATTATACAAA
1 AATTATATGAAATTATATA-TATTATTAAATTATATTTAATATTAATTATTTTAAATTATATAAA
* *
32197124 TTCATATAAGAAAATTTATTAGT-TATAATTATTTT
65 TTCATATAAGAAAATTTATTA-TCAATAATT-TTAT
* * * * * *
32197159 AAATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATAT
1 -AATTATATGAAATTATATATATT-ATTAAATTATATTTAATATTAATTATTTTAAATTATAT
32197222 TTTATATTAT
Statistics
Matches: 225, Mismatches: 12, Indels: 21
0.87 0.05 0.08
Matches are distributed among these distances:
91 168 0.75
92 5 0.02
97 1 0.00
100 5 0.02
101 46 0.20
ACGTcount: A:0.46, C:0.03, G:0.02, T:0.49
Consensus pattern (98 bp):
AATTATATGAAATTATATATATTATTAAATTATATTTAATATTAATTATTTTAAATTATATAAAT
TCATATAAGAAAATTTATTATCAATAATTTTAT
Found at i:32197163 original size:91 final size:91
Alignment explanation
Indices: 32196847--32197144 Score: 533
Period size: 91 Copynumber: 3.3 Consensus size: 91
32196837 ATGATTTTAG
* * *
32196847 TAAATTCATATAAGAACATTTATTATTAAGAATTATATGAAATTATATATCATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
32196912 TTTAATATTAATTATTTTAAATTATA
66 TTTAATATTAATTATTTTAAATTATA
*
32196938 TAAATTCATATAAGAAAATTTATTATCAATAATTTTATGAAATTATATATCATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
32197003 TTTAATATTAATTATTTTAAATTATA
66 TTTAATATTAATTATTTTAAATTATA
*
32197029 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
*
32197094 TTTAATAATAATTATTTTAAATTATA
66 TTTAATATTAATTATTTTAAATTATA
*
32197120 CAAATTCATATAAGAAAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
32197145 GTTATAATTA
Statistics
Matches: 199, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
91 199 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TTTAATATTAATTATTTTAAATTATA
Found at i:32197558 original size:45 final size:44
Alignment explanation
Indices: 32197475--32197562 Score: 124
Period size: 44 Copynumber: 2.0 Consensus size: 44
32197465 ATTACACATC
*
32197475 TATTCCATTCAACCAAACACAAGAATACTATTACGCCTCTATTT
1 TATTACATTCAACCAAACACAAGAATACTATTACGCCTCTATTT
* *
32197519 TATTACATTCAACCAAACA-ATTGATTTACTATTACGCCTCTATT
1 TATTACATTCAACCAAACACA-AGA-ATACTATTACGCCTCTATT
32197563 CCAATACAAC
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
43 1 0.03
44 20 0.51
45 18 0.46
ACGTcount: A:0.35, C:0.25, G:0.05, T:0.35
Consensus pattern (44 bp):
TATTACATTCAACCAAACACAAGAATACTATTACGCCTCTATTT
Found at i:32202454 original size:97 final size:99
Alignment explanation
Indices: 32202339--32202587 Score: 288
Period size: 108 Copynumber: 2.4 Consensus size: 99
32202329 TTTTATGTTG
*
32202339 TTTTTAATTTATTTTAAAGTTATTTTGTTAGTTACTATTATAAAATATTTGTTTA-G-TTATTGT
1 TTTTTAATTTATTTTAAAGTTATTTTGTTAGTTAGTATTATAAAATATTTGTTTAGGTTTATTGT
*
32202402 AATTTGTTAGGTTATGAATGTAAAT-TTTTATTAA
66 AATTTGTTAGGTTATGAATGT-AATCTTTTAATAA
* * * *
32202436 TTTTTAATTTATTTTAAAGTTATTTTGTTAGTAAGTTTTGTGATTAGGTTAATTGTTTGTTTAGG
1 TTTTTAATTTATTTTAAAGTTATTTTG-T--T-AG-TTAGT-ATTA--TAAAATATTTGTTTA-G
* **
32202501 GTTTATTGTGATTTGTTAGGTTATGAATGTAATCTTTTAATCT
57 GTTTATTGTAATTTGTTAGGTTATGAATGTAATCTTTTAATAA
* *
32202544 TTTTTAATTTATTTGAAAGTTATTTTGTTAGTAAGTATTATAAA
1 TTTTTAATTTATTTTAAAGTTATTTTGTTAGTTAGTATTATAAA
32202588 TTAATTATTA
Statistics
Matches: 127, Mismatches: 13, Indels: 21
0.79 0.08 0.13
Matches are distributed among these distances:
97 27 0.21
98 1 0.01
100 4 0.03
101 2 0.02
102 7 0.06
103 7 0.06
104 2 0.02
105 13 0.10
107 5 0.04
108 59 0.46
ACGTcount: A:0.28, C:0.01, G:0.14, T:0.56
Consensus pattern (99 bp):
TTTTTAATTTATTTTAAAGTTATTTTGTTAGTTAGTATTATAAAATATTTGTTTAGGTTTATTGT
AATTTGTTAGGTTATGAATGTAATCTTTTAATAA
Found at i:32205834 original size:17 final size:17
Alignment explanation
Indices: 32205812--32205872 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
32205802 ATTGAATCAC
32205812 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
** * *
32205829 TACATAAGTCTTTGAATCAC
1 TACATAA---TTAAAAACAT
32205849 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
32205866 TACATAA
1 TACATAA
32205873 GTCTTGAAAT
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
17 20 0.61
20 13 0.39
ACGTcount: A:0.51, C:0.15, G:0.03, T:0.31
Consensus pattern (17 bp):
TACATAATTAAAAACAT
Found at i:32205844 original size:37 final size:37
Alignment explanation
Indices: 32205803--32205877 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
32205793 ATTAACTGAA
32205803 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
32205840 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
32205877 T
1 T
32205878 GAAATTAACA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.45, C:0.16, G:0.05, T:0.33
Consensus pattern (37 bp):
TTGAATCACTACATAATTAAAAACATTACATAAGTCT
Found at i:32205891 original size:37 final size:37
Alignment explanation
Indices: 32205803--32205894 Score: 134
Period size: 37 Copynumber: 2.5 Consensus size: 37
32205793 ATTAACTGAA
*
32205803 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
1 TTGAATAACTACATAATTAAAAACATTACATAAGTCT
*
32205840 TTGAATCACTACATAATTAAAAACATTACATAAGTC-
1 TTGAATAACTACATAATTAAAAACATTACATAAGTCT
32205876 TTGAAATTAAC-ACATAATT
1 TTG-AA-TAACTACATAATT
32205895 GAAATGTAAG
Statistics
Matches: 52, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
36 3 0.06
37 46 0.88
38 3 0.06
ACGTcount: A:0.47, C:0.15, G:0.05, T:0.33
Consensus pattern (37 bp):
TTGAATAACTACATAATTAAAAACATTACATAAGTCT
Found at i:32211652 original size:20 final size:20
Alignment explanation
Indices: 32211610--32211652 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
32211600 CCAACATTTC
* *
32211610 AATAAATCAAAAAAATGTCA
1 AATAAATCAAAAAAATATAA
32211630 AATAAATCAAAAACAA-ATAA
1 AATAAATCAAAAA-AATATAA
32211650 AAT
1 AAT
32211653 TACATTATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 18 0.90
21 2 0.10
ACGTcount: A:0.70, C:0.09, G:0.02, T:0.19
Consensus pattern (20 bp):
AATAAATCAAAAAAATATAA
Found at i:32211882 original size:102 final size:101
Alignment explanation
Indices: 32211753--32212041 Score: 436
Period size: 102 Copynumber: 2.9 Consensus size: 101
32211743 TAAAGAACGC
* * *
32211753 AAAAAATTTACATTTATAACAAGTCACAATAAACACTAAACTAAACACAAACAATTTATGACCTA
1 AAAAAATTTACATTTATAAAAAATCACAATAAACATTAAACTAAACACAAACAATTTATGACCTA
*
32211818 ATAATAAATTACTAACAAAATAACTTTAAAATAATT
66 ATCATAAATTACTAACAAAATAACTTTAAAATAATT
* *
32211854 AAAAAATTTTACATTCATAAAAAATCACAATAAACATTAAACTAAACACAAAAAATTTATGACCT
1 AAAAAA-TTTACATTTATAAAAAATCACAATAAACATTAAACTAAACACAAACAATTTATGACCT
* *
32211919 AATCATAAATTACTAGCAAAATAACTTTCAAATAATT
65 AATCATAAATTACTAACAAAATAACTTTAAAATAATT
** * *
32211956 AAAAAAATGCACATTTATAAAAAATCACAATAAACATTAAACTAAACACAAACAATTAATAACCT
1 -AAAAAATTTACATTTATAAAAAATCACAATAAACATTAAACTAAACACAAACAATTTATGACCT
*
32212021 AACCATAAATTACTAA-AAAAT
65 AATCATAAATTACTAACAAAAT
32212042 TGACTTTACA
Statistics
Matches: 170, Mismatches: 16, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
101 11 0.06
102 153 0.90
103 6 0.04
ACGTcount: A:0.57, C:0.15, G:0.02, T:0.26
Consensus pattern (101 bp):
AAAAAATTTACATTTATAAAAAATCACAATAAACATTAAACTAAACACAAACAATTTATGACCTA
ATCATAAATTACTAACAAAATAACTTTAAAATAATT
Found at i:32211907 original size:48 final size:48
Alignment explanation
Indices: 32211752--32212012 Score: 123
Period size: 48 Copynumber: 5.2 Consensus size: 48
32211742 TTAAAGAACG
* * * *
32211752 CAAAAAATTTACATTTATAACAAGTCACAATAAACACTAAACTAAACA
1 CAAAAAATTTACATTAATAAAAAATCACAATAAACATTAAACTAAACA
* * * * * * * **
32211800 CAAACAATTTATGACCTAATAATAAATTACTAACAAAATAACTTTAAAATAATTA
1 CAAAAAATTTA-CA-TTAATAA-AAA--A-TCACAATA-AACATTAAACTAAACA
* *
32211855 -AAAAATTTTACATTCATAAAAAATCACAATAAACATTAAACTAAACA
1 CAAAAAATTTACATTAATAAAAAATCACAATAAACATTAAACTAAACA
* * * * * * **
32211902 CAAAAAATTTATGACCTAATCATAAATTACTAGCAAAATAACTTTCAAA-TAATTA
1 CAAAAAATTTA-CA-TTAAT-AAAAAAT-C-A-CAATA-AACATT-AAACTAAACA
** *
32211957 -AAAAAATGCACATTTATAAAAAATCACAATAAACATTAAACTAAACA
1 CAAAAAATTTACATTAATAAAAAATCACAATAAACATTAAACTAAACA
*
32212004 CAAACAATT
1 CAAAAAATT
32212013 AATAACCTAA
Statistics
Matches: 148, Mismatches: 47, Indels: 36
0.64 0.20 0.16
Matches are distributed among these distances:
46 3 0.02
47 21 0.14
48 35 0.24
49 4 0.03
50 9 0.06
51 15 0.10
52 9 0.06
53 3 0.02
54 26 0.18
55 20 0.14
56 3 0.02
ACGTcount: A:0.56, C:0.15, G:0.02, T:0.26
Consensus pattern (48 bp):
CAAAAAATTTACATTAATAAAAAATCACAATAAACATTAAACTAAACA
Found at i:32212054 original size:42 final size:43
Alignment explanation
Indices: 32212007--32212092 Score: 165
Period size: 42 Copynumber: 2.0 Consensus size: 43
32211997 CTAAACACAA
32212007 ACAATTAATAACCTAACCATAAATTACT-AAAAAATTGACTTT
1 ACAATTAATAACCTAACCATAAATTACTAAAAAAATTGACTTT
32212049 ACAATTAATAACCTAACCATAAATTACTAAAAAAATTGACTTT
1 ACAATTAATAACCTAACCATAAATTACTAAAAAAATTGACTTT
32212092 A
1 A
32212093 AAATAATTTA
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 28 0.65
43 15 0.35
ACGTcount: A:0.51, C:0.16, G:0.02, T:0.30
Consensus pattern (43 bp):
ACAATTAATAACCTAACCATAAATTACTAAAAAAATTGACTTT
Found at i:32212081 original size:102 final size:102
Alignment explanation
Indices: 32211776--32212082 Score: 349
Period size: 102 Copynumber: 3.0 Consensus size: 102
32211766 TTATAACAAG
* *
32211776 TCACAATAAACACTAAACTAAACACAAACAATTTATGACCTAATAATAAATTACTAACAAAATAA
1 TCACAATAAACATTAAACTAAACACAAACAATTTATGACCTAATCATAAATTACTAA-AAAATAA
*** *
32211841 CTTTA-AAATAATTAAAAAATTTTACATT-CATAAAAAA
65 CTTTACAAATAATTAAAAAACCATAAATTAC-TAAAAAA
* *
32211878 TCACAATAAACATTAAACTAAACACAAAAAATTTATGACCTAATCATAAATTACTAGCAAAATAA
1 TCACAATAAACATTAAACTAAACACAAACAATTTATGACCTAATCATAAATTACTA-AAAAATAA
*
32211943 CTTT-CAAATAATTAAAAAA--ATGCACATTTA-TAAAAAA
65 CTTTACAAATAATTAAAAAACCAT--A-AATTACTAAAAAA
* * * *
32211980 TCACAATAAACATTAAACTAAACACAAACAATTAATAACCTAACCATAAATTACTAAAAAATTGA
1 TCACAATAAACATTAAACTAAACACAAACAATTTATGACCTAATCATAAATTACTAAAAAA-TAA
* **
32212045 CTTTACAATTAA-TAACCTAACCATAAATTACTAAAAAA
65 CTTTACAAATAATTAA-AAAACCATAAATTACTAAAAAA
32212083 ATTGACTTTA
Statistics
Matches: 176, Mismatches: 17, Indels: 23
0.81 0.08 0.11
Matches are distributed among these distances:
100 1 0.01
101 4 0.02
102 151 0.86
103 18 0.10
105 2 0.01
ACGTcount: A:0.56, C:0.16, G:0.02, T:0.26
Consensus pattern (102 bp):
TCACAATAAACATTAAACTAAACACAAACAATTTATGACCTAATCATAAATTACTAAAAAATAAC
TTTACAAATAATTAAAAAACCATAAATTACTAAAAAA
Found at i:32212254 original size:107 final size:108
Alignment explanation
Indices: 32212049--32212275 Score: 323
Period size: 107 Copynumber: 2.1 Consensus size: 108
32212039 AATTGACTTT
* * * * *
32212049 ACAATTAATAACCTAACCATAAATTACTAAAAAAATTGACTTTAAAATAATTTAAAAAATAAAAA
1 ACAATTTATAACCTAACCAGAAATTACTAAAAAAA-TAACTATAAAATAATTAAAAAAATAAAAA
* *
32212114 ATTTTATATTAATAGAAAATCACAAAACACTAAACTAAACACAA
65 ATATTATATTAATAAAAAATCACAAAACACTAAACTAAACACAA
**
32212158 ACAATTTATAACCTAATTAGAAATTACTAACAAAAA-AACTATAAAATAATTAAAAAAATAAAAA
1 ACAATTTATAACCTAACCAGAAATTACTAA-AAAAATAACTATAAAATAATTAAAAAAATAAAAA
* *
32212222 A-ATTATATTCATAAAAAATTACAAAACACTAAACTAAACACAA
65 ATATTATATTAATAAAAAATCACAAAACACTAAACTAAACACAA
32212265 ACAATTTATAA
1 ACAATTTATAA
32212276 TAATTAATAA
Statistics
Matches: 106, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
107 49 0.46
108 26 0.25
109 26 0.25
110 5 0.05
ACGTcount: A:0.60, C:0.12, G:0.01, T:0.26
Consensus pattern (108 bp):
ACAATTTATAACCTAACCAGAAATTACTAAAAAAATAACTATAAAATAATTAAAAAAATAAAAAA
TATTATATTAATAAAAAATCACAAAACACTAAACTAAACACAA
Found at i:32212302 original size:107 final size:107
Alignment explanation
Indices: 32212091--32212303 Score: 286
Period size: 107 Copynumber: 2.0 Consensus size: 107
32212081 AAATTGACTT
* * *
32212091 TAAAATAATTTAAAAAATAAAAAATTTTATATTAATAGAAAATCACAAAACACTAAACTAAACAC
1 TAAAATAATTAAAAAAATAAAAAATATTATATTAATAAAAAATCACAAAACACTAAACTAAACAC
** **
32212156 AAACAATTTATAACCTAATTAGAAATTACTAACAAAAAAACTA
66 AAACAATTTATAA-CTAATTAGAAAAAAAAAACAAAAAAACTA
* *
32212199 TAAAATAATTAAAAAAATAAAAAA-ATTATATTCATAAAAAATTACAAAACACTAAACTAAACAC
1 TAAAATAATTAAAAAAATAAAAAATATTATATTAATAAAAAATCACAAAACACTAAACTAAACAC
*
32212263 AAACAATTTATAA-TAATTAATAACAAAAAAAACATAAAAAA
66 AAACAATTTATAACTAATT-AGAA-AAAAAAAACA-AAAAAA
32212304 TAACGATCCC
Statistics
Matches: 92, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
105 5 0.05
106 3 0.03
107 55 0.60
108 29 0.32
ACGTcount: A:0.64, C:0.11, G:0.01, T:0.24
Consensus pattern (107 bp):
TAAAATAATTAAAAAAATAAAAAATATTATATTAATAAAAAATCACAAAACACTAAACTAAACAC
AAACAATTTATAACTAATTAGAAAAAAAAAACAAAAAAACTA
Found at i:32214599 original size:11 final size:11
Alignment explanation
Indices: 32214561--32214617 Score: 64
Period size: 11 Copynumber: 5.2 Consensus size: 11
32214551 TAAATCCTTT
32214561 CTCTCAATTT-
1 CTCTCAATTTC
*
32214571 CTCTGTAATATT-
1 CTCT-CAAT-TTC
32214583 CTCTCAATTTC
1 CTCTCAATTTC
32214594 CTCTCAATTTC
1 CTCTCAATTTC
*
32214605 CTCTCAAATTC
1 CTCTCAATTTC
32214616 CT
1 CT
32214618 ATTTGAAAGA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
10 6 0.15
11 29 0.71
12 6 0.15
ACGTcount: A:0.21, C:0.32, G:0.02, T:0.46
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:32216454 original size:18 final size:18
Alignment explanation
Indices: 32216431--32216473 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
32216421 TGCCAGGTGC
* *
32216431 GTATCCTAGCCCTTTTAT
1 GTATCCTAACCCTTATAT
32216449 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
32216467 GTTTCCT
1 GTATCCT
32216474 TTTCCTAGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.19, C:0.28, G:0.09, T:0.44
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:32216952 original size:49 final size:49
Alignment explanation
Indices: 32216897--32217014 Score: 218
Period size: 49 Copynumber: 2.4 Consensus size: 49
32216887 TACATTAATG
*
32216897 TAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTGATA
1 TAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTCATA
*
32216946 TAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTCATT
1 TAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTCATA
32216995 TAATAAAATACAAAATAGTT
1 TAATAAAATACAAAATAGTT
32217015 AATATTCTTA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 67 1.00
ACGTcount: A:0.45, C:0.03, G:0.07, T:0.45
Consensus pattern (49 bp):
TAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTCATA
Found at i:32220421 original size:124 final size:124
Alignment explanation
Indices: 32220097--32220502 Score: 600
Period size: 124 Copynumber: 3.3 Consensus size: 124
32220087 CATGCTACTG
* * *
32220097 TAGCAAAAGCGCGTCCACGTGAGAGTGATTTCAAAAATTCTTTTAATAAAGCATCCTGCTTGAAG
1 TAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAAAAATTCTTCTAATAAAGCATCCTGCTTGAAG
* *
32220162 CGTTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCTACTA
66 C--TTTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTTCAGGACCTACAA
* *
32220223 TACCAAAAGCGTGTCCACGTGGGAGCGATTTCAAAAATTCTTCTAATAAAGCATCCTGCTTGAAG
1 TAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAAAAATTCTTCTAATAAAGCATCCTGCTTGAAG
*
32220288 CGTTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTA-TTTTTCAGGACCTACAA
66 CTTTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTTCAGGACCTACAA
* * * * *
32220346 TAGCAAAAGCGCGTCCACGAGGGAGCGATTTTAGAAATTCTTCTGATAAAGCATCCTGCTTGAAA
1 TAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAAAAATTCTTCTAATAAAGCATCCTGCTTGAAG
*
32220411 CATTTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTTCAGGACCTA-ATG
66 C-TTTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTTCAGGACCTACA-A
* ** *
32220471 TATCAAAAATGCGTCCGCGTGGGAGCGATTTC
1 TAGCAAAAGCGCGTCCACGTGGGAGCGATTTC
32220503 CTTAATGAAT
Statistics
Matches: 254, Mismatches: 23, Indels: 7
0.89 0.08 0.02
Matches are distributed among these distances:
123 75 0.30
124 78 0.31
125 40 0.16
126 61 0.24
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (124 bp):
TAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAAAAATTCTTCTAATAAAGCATCCTGCTTGAAG
CTTTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTTCAGGACCTACAA
Found at i:32224538 original size:41 final size:41
Alignment explanation
Indices: 32224428--32224540 Score: 163
Period size: 41 Copynumber: 2.8 Consensus size: 41
32224418 CACTAGCACC
*** *
32224428 AAGCCTGCTAGGCATAAAGCCTGATAGGGTACACCGACATG
1 AAGCCTGCTAGGCATAAAGCCTGATACATTACACCGACATA
* * *
32224469 AAGCCTGCTAGGCTTAAAGCCTGATACATTTCACCGGCATA
1 AAGCCTGCTAGGCATAAAGCCTGATACATTACACCGACATA
32224510 AAGCCTGCTAGGCATAAAGCCTGATACATTA
1 AAGCCTGCTAGGCATAAAGCCTGATACATTA
32224541 ATATAAAGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 63 1.00
ACGTcount: A:0.32, C:0.25, G:0.22, T:0.21
Consensus pattern (41 bp):
AAGCCTGCTAGGCATAAAGCCTGATACATTACACCGACATA
Found at i:32225672 original size:16 final size:14
Alignment explanation
Indices: 32225641--32225669 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
32225631 ATTTCACAAA
32225641 AATTTCACACATAT
1 AATTTCACACATAT
32225655 AATTTCACACATAT
1 AATTTCACACATAT
32225669 A
1 A
32225670 TAACGCAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.21, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTTCACACATAT
Found at i:32230505 original size:13 final size:13
Alignment explanation
Indices: 32230487--32230514 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
32230477 AAGCCATGAT
32230487 AAGGTGGTTAGTA
1 AAGGTGGTTAGTA
32230500 AAGGTGGTTAGTA
1 AAGGTGGTTAGTA
32230513 AA
1 AA
32230515 ACTAATTCAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.36, T:0.29
Consensus pattern (13 bp):
AAGGTGGTTAGTA
Found at i:32233826 original size:18 final size:19
Alignment explanation
Indices: 32233798--32233837 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
32233788 TCATTTATAT
32233798 TTTATTTTATATATAAATA
1 TTTATTTTATATATAAATA
* *
32233817 TTTA-TTTATATTTATATA
1 TTTATTTTATATATAAATA
32233835 TTT
1 TTT
32233838 TGTTCACTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTATTTTATATATAAATA
Found at i:32233833 original size:16 final size:16
Alignment explanation
Indices: 32233784--32233833 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
32233774 AAACATAAAT
32233784 TATTTCATTTATATTT-
1 TATTT-ATTTATATTTA
* **
32233800 TATTT-TATATATAAA
1 TATTTATTTATATTTA
32233815 TATTTATTTATATTTA
1 TATTTATTTATATTTA
32233831 TAT
1 TAT
32233834 ATTTTGTTCA
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
14 6 0.23
15 5 0.19
16 15 0.58
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (16 bp):
TATTTATTTATATTTA
Found at i:32234093 original size:88 final size:87
Alignment explanation
Indices: 32233960--32234261 Score: 362
Period size: 86 Copynumber: 3.5 Consensus size: 87
32233950 AATATATTTT
* * * * *
32233960 TTAAAAGTCAATAAAATCTGTTTCGGGATCTATTCCCGCCATTCAACGGATTTTATTCCAATTTT
1 TTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTCAACGAATTTTATT-CAATTTT
* *
32234025 GATTTTATTTCCAAAACAAG-TA
65 GATTTTATTTCCAAAACGAGAAA
* * * * *
32234047 TTAAAATTAAAATAAAAACTGTCTCGGGATTTATTCCAGCCGTTCAACAAATTTTATTCATTTTT
1 TTAAAATT-AAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTCAACGAATTTTATTCAATTTT
*
32234112 TATTTTATTTCC-AAACGAGAAA
65 GATTTTATTTCCAAAACGAGAAA
* *
32234134 TTAAAGTTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTCAATGAATTTTATT-ACA-TTT
1 TTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTCAACGAATTTTATTCA-ATTTT
*
32234197 GATTTTGTTTCCAAAACGAGAAA
65 GATTTTATTTCCAAAACGAGAAA
* * * *
32234220 TTAAAATTAAAT-AAATCTATTTCCGGCTTTATTCTCGCCGTT
1 TTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTT
32234262 TAACAATATT
Statistics
Matches: 184, Mismatches: 27, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
85 40 0.22
86 71 0.39
87 32 0.17
88 41 0.22
ACGTcount: A:0.33, C:0.16, G:0.11, T:0.39
Consensus pattern (87 bp):
TTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTCAACGAATTTTATTCAATTTTG
ATTTTATTTCCAAAACGAGAAA
Found at i:32234466 original size:35 final size:35
Alignment explanation
Indices: 32234394--32234467 Score: 94
Period size: 35 Copynumber: 2.1 Consensus size: 35
32234384 CAAATAATTC
* * *
32234394 TATTTCGGGATTTATTCCCGCTGTTTAACAGACTT
1 TATTTCGGGATTTATTCCCACCGTTCAACAGACTT
* * *
32234429 TATTTTGGGATTTATTCCCACCGTTCAACGGATTT
1 TATTTCGGGATTTATTCCCACCGTTCAACAGACTT
32234464 TATT
1 TATT
32234468 CCTTTTTTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.20, C:0.19, G:0.16, T:0.45
Consensus pattern (35 bp):
TATTTCGGGATTTATTCCCACCGTTCAACAGACTT
Found at i:32234616 original size:87 final size:87
Alignment explanation
Indices: 32234429--32234665 Score: 309
Period size: 87 Copynumber: 2.7 Consensus size: 87
32234419 TAACAGACTT
* * * *
32234429 TATTTTGGGATTTATTCCCACCGTTCAACGGATTTTATTCCTTTTTTTTATTTTTTTTCCAAA-C
1 TATTTTGGGATTTATTCCCGCCGTTCAACGGATTTTATT-C-TATTTTGATTTTGTTTCCAAATC
32234493 GAGAAATTAAAATTAAATAAAATC
64 GAGAAATTAAAATTAAATAAAATC
* *
32234517 TATTTTGAGATTTATTCCCGCCGTTCAACGGATTTTATTAC-ATTTTGATTTTGTTGCCAAATCG
1 TATTTTGGGATTTATTCCCGCCGTTCAACGGATTTTATT-CTATTTTGATTTTGTTTCCAAATCG
32234581 AGAAATTAAAATTAAATAAAATC
65 AGAAATTAAAATTAAATAAAATC
* * * * * *
32234604 TGTTTTGGGATTTATTCTCGCCGTTTAACTAGATTTTATTCGATATTGA-TTTGTTTCCAAAT
1 TATTTTGGGATTTATTCCCGCCGTTCAAC-GGATTTTATTCTATTTTGATTTTGTTTCCAAAT
32234666 GATGACTTCA
Statistics
Matches: 132, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
86 16 0.12
87 63 0.48
88 53 0.40
ACGTcount: A:0.29, C:0.14, G:0.12, T:0.45
Consensus pattern (87 bp):
TATTTTGGGATTTATTCCCGCCGTTCAACGGATTTTATTCTATTTTGATTTTGTTTCCAAATCGA
GAAATTAAAATTAAATAAAATC
Found at i:32234746 original size:35 final size:35
Alignment explanation
Indices: 32234689--32234760 Score: 101
Period size: 35 Copynumber: 2.1 Consensus size: 35
32234679 AATAATTCTG
32234689 TTTCAGGATTTATTCCACCCGTTTAACAAACTTTA
1 TTTCAGGATTTATTCCACCCGTTTAACAAACTTTA
* * *
32234724 TTTCGGGATTTATTCC-CGCCGTTTAACAGATTTTA
1 TTTCAGGATTTATTCCAC-CCGTTTAACAAACTTTA
32234759 TT
1 TT
32234761 CATTTTTTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
34 1 0.03
35 32 0.97
ACGTcount: A:0.24, C:0.21, G:0.12, T:0.43
Consensus pattern (35 bp):
TTTCAGGATTTATTCCACCCGTTTAACAAACTTTA
Found at i:32234900 original size:88 final size:86
Alignment explanation
Indices: 32234724--32234936 Score: 336
Period size: 88 Copynumber: 2.4 Consensus size: 86
32234714 ACAAACTTTA
* *
32234724 TTTCGGGATTTATTCCCGCCGTTTAACAGATTTTATTCATTTTTTATTTTATTTCTAAACGAGAA
1 TTTCGGGATTTATTCCCGCCGTTTAACAGATTTTATTCATTTTTTATTTTATTCCAAAACGAGAA
*
32234789 ATTAAAGTTAAATAAAATCTG
66 ATTAAAATTAAATAAAATCTG
* * *
32234810 TTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATTACATTTTTTATTTTGTTGCCAAAACGAG
1 TTTCGGGATTTATTCCCGCCGTTTAACAGATTTTATT-CATTTTTTATTTTATT-CCAAAACGAG
32234875 AAATTAAAATTAAATAAAATCTG
64 AAATTAAAATTAAATAAAATCTG
*
32234898 TTTCGGGATTTATTCCCGCCATTTAACAAGATTTTATTC
1 TTTCGGGATTTATTCCCGCCGTTTAAC-AGATTTTATTC
32234937 GATATTGATT
Statistics
Matches: 115, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
86 35 0.30
87 15 0.13
88 56 0.49
89 9 0.08
ACGTcount: A:0.30, C:0.15, G:0.13, T:0.42
Consensus pattern (86 bp):
TTTCGGGATTTATTCCCGCCGTTTAACAGATTTTATTCATTTTTTATTTTATTCCAAAACGAGAA
ATTAAAATTAAATAAAATCTG
Found at i:32234948 original size:292 final size:294
Alignment explanation
Indices: 32234296--32235018 Score: 1132
Period size: 293 Copynumber: 2.5 Consensus size: 294
32234286 TTTTGTTTTC
* *
32234296 AAATTAAATAAAATCTGTTTTGGGATTTATTCCCGCTATTTAACAAGATTTTATTCGATATTGGT
1 AAATTAAATAAAATCTGTTTTGGGATTTATTCCCGCCATTTAACAAGATTTTATTCGATATTGAT
* * * *
32234361 TTGTTTACAAATGAAGACTTAATCAAATAATTCTATTTCGGGATTTATTCC-CGCTGTTTAACAG
66 TTGTTTCCAAATGAAGACTTAATCAAATAATTCTGTTTCGGGATTTATTCCACGCCGTTTAACAA
* * * *
32234425 ACTTTATTTTGGGATTTATTCCCACCGTTCAACGGATTTTATTCCTTTTTTTTATTTTTTTTCCA
131 ACTTTATTTCGGGATTTATTCCCACCGTTCAACAGATTTTATTCCTATTTTTTATTTTATTTCCA
*
32234490 AACGAGAAATTAAAATTAAATAAAATCTATTTTGAGATTTATTCCCGCCGTTCAACGGATTTTAT
196 AACGAGAAATTAAAATTAAATAAAATCTATTTCGAGATTTATTCCCGCCGTTCAACGGATTTTAT
*
32234555 TACATTTTGATTTTGTTGCCAAATCGAGAAATTA
261 TACATTTTGATTTTGTTGCCAAAACGAGAAATTA
* * *
32234589 AAATTAAATAAAATCTGTTTTGGGATTTATTCTCGCCGTTTAACTAGATTTTATTCGATATTGAT
1 AAATTAAATAAAATCTGTTTTGGGATTTATTCCCGCCATTTAACAAGATTTTATTCGATATTGAT
* * *
32234654 TTGTTTCCAAATGATGACTTCATCAAATAATTCTGTTTCAGGATTTATTCCAC-CCGTTTAACAA
66 TTGTTTCCAAATGAAGACTTAATCAAATAATTCTGTTTCGGGATTTATTCCACGCCGTTTAACAA
* * *
32234718 ACTTTATTTCGGGATTTATTCCCGCCGTTTAACAGATTTTATT-C-ATTTTTTATTTTATTTCTA
131 ACTTTATTTCGGGATTTATTCCCACCGTTCAACAGATTTTATTCCTATTTTTTATTTTATTTCCA
* * *
32234781 AACGAGAAATTAAAGTTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTCAACGGATTTTAT
196 AACGAGAAATTAAAATTAAATAAAATCTATTTCGAGATTTATTCCCGCCGTTCAACGGATTTTAT
*
32234846 TACATTTTTTATTTTGTTGCCAAAACGAGAAATTA
261 TACA-TTTTGATTTTGTTGCCAAAACGAGAAATTA
*
32234881 AAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCATTTAACAAGATTTTATTCGATATTGAT
1 AAATTAAATAAAATCTGTTTTGGGATTTATTCCCGCCATTTAACAAGATTTTATTCGATATTGAT
* * * *
32234946 TTGTTTCCAAACGAAGACTTAATCAAATAATTCTGTTTCGGGATTTATT-CACGTCATTTAATAA
66 TTGTTTCCAAATGAAGACTTAATCAAATAATTCTGTTTCGGGATTTATTCCACGCCGTTTAACAA
32235010 ACTTTATTT
131 ACTTTATTT
32235019 TGATTTAATT
Statistics
Matches: 391, Mismatches: 36, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
291 84 0.21
292 152 0.39
293 154 0.39
294 1 0.00
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.43
Consensus pattern (294 bp):
AAATTAAATAAAATCTGTTTTGGGATTTATTCCCGCCATTTAACAAGATTTTATTCGATATTGAT
TTGTTTCCAAATGAAGACTTAATCAAATAATTCTGTTTCGGGATTTATTCCACGCCGTTTAACAA
ACTTTATTTCGGGATTTATTCCCACCGTTCAACAGATTTTATTCCTATTTTTTATTTTATTTCCA
AACGAGAAATTAAAATTAAATAAAATCTATTTCGAGATTTATTCCCGCCGTTCAACGGATTTTAT
TACATTTTGATTTTGTTGCCAAAACGAGAAATTA
Found at i:32235093 original size:59 final size:59
Alignment explanation
Indices: 32234972--32235097 Score: 144
Period size: 59 Copynumber: 2.1 Consensus size: 59
32234962 ACTTAATCAA
* * * * * * *
32234972 ATAATTCTGTTTCGGGATTTATTCACGTCATTTAATAAACTTTATTTTGATTTAATTAC
1 ATAATTTTGTTTAGGGATTTAATCACGCCATTTAACAAAATTGATTTTGATTTAATTAC
** ** *
32235031 ATAATTTTGTTTAGGGATTTAATCTTGCCATTTAACAAAATTGATTTTGATTTTGTTTC
1 ATAATTTTGTTTAGGGATTTAATCACGCCATTTAACAAAATTGATTTTGATTTAATTAC
32235090 ATAATTTT
1 ATAATTTT
32235098 AATTCTGTAG
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
59 55 1.00
ACGTcount: A:0.29, C:0.10, G:0.11, T:0.51
Consensus pattern (59 bp):
ATAATTTTGTTTAGGGATTTAATCACGCCATTTAACAAAATTGATTTTGATTTAATTAC
Found at i:32259252 original size:9 final size:9
Alignment explanation
Indices: 32259231--32259265 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
32259221 TCATCTATGT
32259231 TAAAAAACTA
1 TAAAAAAC-A
32259241 TAAAAAACA
1 TAAAAAACA
*
32259250 TAAAAAACG
1 TAAAAAACA
32259259 TAAAAAA
1 TAAAAAA
32259266 AAATGAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 16 0.67
10 8 0.33
ACGTcount: A:0.74, C:0.09, G:0.03, T:0.14
Consensus pattern (9 bp):
TAAAAAACA
Found at i:32259255 original size:19 final size:19
Alignment explanation
Indices: 32259231--32259276 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
32259221 TCATCTATGT
*
32259231 TAAAAAAC-TATAAAAAACA
1 TAAAAAACGTA-AAAAAAAA
32259250 TAAAAAACGTAAAAAAAAA
1 TAAAAAACGTAAAAAAAAA
*
32259269 TGAAAAAC
1 TAAAAAAC
32259277 AAAAAGAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 22 0.92
20 2 0.08
ACGTcount: A:0.74, C:0.09, G:0.04, T:0.13
Consensus pattern (19 bp):
TAAAAAACGTAAAAAAAAA
Found at i:32266571 original size:62 final size:62
Alignment explanation
Indices: 32266456--32266635 Score: 165
Period size: 62 Copynumber: 2.9 Consensus size: 62
32266446 AGAGGGCCTA
* * * * *
32266456 TCAAAA-TTTTGGGAAATTATGATTTTTCC-TTGAA-TTTTTAGTAAATTTTAATTAGGC-CC
1 TCAAAATTTTTGGAAAATTATCA-TTTTCCTTTAAAGTTTTTAGAAAATTTTAATTAGACTCC
32266515 TCCAAAATTTTTGGAAAATT-TCATTTCTCCTTTAAAGTTTTTAGAAAATTTTAATTAGACTCC
1 T-CAAAATTTTTGGAAAATTATCATTT-TCCTTTAAAGTTTTTAGAAAATTTTAATTAGACTCC
* * * * * *
32266578 TC-AATTTTTTTGAAATTTCTCATTTTACCTTTTAATGTTTTTTTGAAAATTTTAATTA
1 TCAAAATTTTTGGAAAATTATCATTTT-CC-TTTAAAG-TTTTTAGAAAATTTTAATTA
32266636 AGCTCACTTA
Statistics
Matches: 101, Mismatches: 10, Indels: 15
0.80 0.08 0.12
Matches are distributed among these distances:
59 4 0.04
60 10 0.10
61 29 0.29
62 30 0.30
63 9 0.09
64 19 0.19
ACGTcount: A:0.31, C:0.11, G:0.09, T:0.49
Consensus pattern (62 bp):
TCAAAATTTTTGGAAAATTATCATTTTCCTTTAAAGTTTTTAGAAAATTTTAATTAGACTCC
Found at i:32266691 original size:21 final size:22
Alignment explanation
Indices: 32266657--32266697 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
32266647 AATGTTTGAA
*
32266657 AAAAATTCTCATTA-ATCTCAC
1 AAAAATTCTAATTAGATCTCAC
*
32266678 AAAAATTTTAATTAGATCTC
1 AAAAATTCTAATTAGATCTC
32266698 CAATTTTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.44, C:0.17, G:0.02, T:0.37
Consensus pattern (22 bp):
AAAAATTCTAATTAGATCTCAC
Found at i:32276597 original size:11 final size:11
Alignment explanation
Indices: 32276589--32276613 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
32276579 TAGTTTTTCT
32276589 TTTGGTTTTAA
1 TTTGGTTTTAA
32276600 TTTGGTTTTAA
1 TTTGGTTTTAA
32276611 TTT
1 TTT
32276614 TATTTTCGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.68
Consensus pattern (11 bp):
TTTGGTTTTAA
Found at i:32278715 original size:16 final size:16
Alignment explanation
Indices: 32278694--32278730 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
32278684 TTTGTCTTCG
* *
32278694 TATTTTAAATTTTTAT
1 TATTTTAAATATATAT
32278710 TATTTTAAATATATAT
1 TATTTTAAATATATAT
32278726 TATTT
1 TATTT
32278731 AGATGGTCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TATTTTAAATATATAT
Found at i:32279106 original size:31 final size:31
Alignment explanation
Indices: 32279043--32279107 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
32279033 AAGTCTCGTG
* * *
32279043 CAAAGATATAATCAGTACAAGACAAACTATA
1 CAAAAATATAATCAATACAAGACAAACCATA
*
32279074 CAAAAATATAATTAATACAAGA-AAAGCCATA
1 CAAAAATATAATCAATACAAGACAAA-CCATA
32279105 CAA
1 CAA
32279108 GACAAATATC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 3 0.10
31 26 0.90
ACGTcount: A:0.58, C:0.15, G:0.08, T:0.18
Consensus pattern (31 bp):
CAAAAATATAATCAATACAAGACAAACCATA
Found at i:32281622 original size:31 final size:31
Alignment explanation
Indices: 32281587--32281653 Score: 100
Period size: 31 Copynumber: 2.2 Consensus size: 31
32281577 GTTACAAAAT
*
32281587 AGTCATTGAATTATTTGAAACTT-TTCATTTA
1 AGTCATTAAATTATTTGAAACTTATT-ATTTA
*
32281618 AGTCATTAAATTATTTGAAAGTTATTATTTA
1 AGTCATTAAATTATTTGAAACTTATTATTTA
32281649 AGTCA
1 AGTCA
32281654 CTGGTTGTCA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
31 31 0.94
32 2 0.06
ACGTcount: A:0.36, C:0.07, G:0.10, T:0.46
Consensus pattern (31 bp):
AGTCATTAAATTATTTGAAACTTATTATTTA
Found at i:32292294 original size:21 final size:21
Alignment explanation
Indices: 32292270--32292310 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
32292260 TATATGGTCA
*
32292270 GTATGATCTGTAATATGATAT
1 GTATGATCTATAATATGATAT
32292291 GTATGATCTATAATATGATA
1 GTATGATCTATAATATGATA
32292311 ACTATGATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.05, G:0.17, T:0.41
Consensus pattern (21 bp):
GTATGATCTATAATATGATAT
Found at i:32292316 original size:21 final size:21
Alignment explanation
Indices: 32292271--32292318 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
32292261 ATATGGTCAG
* **
32292271 TATGATCTGTAATATGATATG
1 TATGATCTATAATATGATAAC
32292292 TATGATCTATAATATGATAAC
1 TATGATCTATAATATGATAAC
32292313 TATGAT
1 TATGAT
32292319 ATGTTATTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.38, C:0.06, G:0.15, T:0.42
Consensus pattern (21 bp):
TATGATCTATAATATGATAAC
Found at i:32305932 original size:16 final size:16
Alignment explanation
Indices: 32305913--32305945 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
32305903 AATTATTTAT
*
32305913 TTATTTTTGTAAGGTA
1 TTATTTTGGTAAGGTA
32305929 TTATTTTGGTAAGGTA
1 TTATTTTGGTAAGGTA
32305945 T
1 T
32305946 GTTTATGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55
Consensus pattern (16 bp):
TTATTTTGGTAAGGTA
Found at i:32305973 original size:21 final size:21
Alignment explanation
Indices: 32305949--32305990 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
32305939 AAGGTATGTT
*
32305949 TATGTTTTATTT-TTTGATTCA
1 TATGTTTT-TTTATTAGATTCA
32305970 TATGTTTTTTTATTAGATTCA
1 TATGTTTTTTTATTAGATTCA
32305991 AATAAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.21, C:0.05, G:0.10, T:0.64
Consensus pattern (21 bp):
TATGTTTTTTTATTAGATTCA
Found at i:32315160 original size:16 final size:17
Alignment explanation
Indices: 32315126--32315164 Score: 62
Period size: 18 Copynumber: 2.3 Consensus size: 17
32315116 ATTTTAAATT
32315126 AAAAAATAATACATTTTA
1 AAAAAATAATACA-TTTA
32315144 AAAAAATAATACA-TTA
1 AAAAAATAATACATTTA
32315160 AAAAA
1 AAAAA
32315165 TATTCATAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 8 0.38
18 13 0.62
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (17 bp):
AAAAAATAATACATTTA
Found at i:32315162 original size:15 final size:15
Alignment explanation
Indices: 32315123--32315166 Score: 61
Period size: 18 Copynumber: 2.7 Consensus size: 15
32315113 AAAATTTTAA
32315123 ATTAAAAAATAATAC
1 ATTAAAAAATAATAC
32315138 ATTTTAAAAAAATAATAC
1 A--TT-AAAAAATAATAC
32315156 ATTAAAAAATA
1 ATTAAAAAATA
32315167 TTCATAGTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 9 0.35
16 2 0.08
17 2 0.08
18 13 0.50
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.30
Consensus pattern (15 bp):
ATTAAAAAATAATAC
Found at i:32320904 original size:17 final size:17
Alignment explanation
Indices: 32320870--32320904 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
32320860 CCCCCATTCT
*
32320870 AATCCCTAACAACTCTA
1 AATCCCTAACAACCCTA
*
32320887 AATCCCTAAGAACCCTA
1 AATCCCTAACAACCCTA
32320904 A
1 A
32320905 CAAATTCACT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.43, C:0.34, G:0.03, T:0.20
Consensus pattern (17 bp):
AATCCCTAACAACCCTA
Found at i:32322284 original size:17 final size:17
Alignment explanation
Indices: 32322248--32322285 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
32322238 TGGTATGATG
*
32322248 TGATGAAAATTCATGAA
1 TGATGAAAATACATGAA
32322265 TGATGGAAAATACATG-A
1 TGAT-GAAAATACATGAA
32322282 TGAT
1 TGAT
32322286 TAACTTATAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.45, C:0.05, G:0.21, T:0.29
Consensus pattern (17 bp):
TGATGAAAATACATGAA
Found at i:32322598 original size:6 final size:6
Alignment explanation
Indices: 32322587--32322621 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
32322577 TATTTCTAAA
*
32322587 TTCATT TTCATT TTCATT TTCATT ATTAATT TTCA
1 TTCATT TTCATT TTCATT TTCATT -TTCATT TTCA
32322622 GATTTATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
6 21 0.81
7 5 0.19
ACGTcount: A:0.23, C:0.14, G:0.00, T:0.63
Consensus pattern (6 bp):
TTCATT
Found at i:32325107 original size:11 final size:11
Alignment explanation
Indices: 32325091--32325139 Score: 53
Period size: 11 Copynumber: 4.3 Consensus size: 11
32325081 TGCAGGTTAT
32325091 TTTTGGTGTTG
1 TTTTGGTGTTG
32325102 TTTTGGTGTTG
1 TTTTGGTGTTG
* *
32325113 ATTTTGGGTGGTA
1 -TTTT-GGTGTTG
*
32325126 TTTTAGTGTTG
1 TTTTGGTGTTG
32325137 TTT
1 TTT
32325140 CGCTGTCAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
11 18 0.58
12 8 0.26
13 5 0.16
ACGTcount: A:0.06, C:0.00, G:0.33, T:0.61
Consensus pattern (11 bp):
TTTTGGTGTTG
Found at i:32327861 original size:2 final size:2
Alignment explanation
Indices: 32327848--32327877 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
32327838 GTTTAATTTG
*
32327848 AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32327878 GTTTCAGTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:32328376 original size:17 final size:17
Alignment explanation
Indices: 32328354--32328388 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
32328344 AGTGAGTAGG
*
32328354 TTAATCTATTGTGTTTA
1 TTAATCTATTATGTTTA
32328371 TTAATCTATTATGTTTA
1 TTAATCTATTATGTTTA
32328388 T
1 T
32328389 CTTCGCGTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.26, C:0.06, G:0.09, T:0.60
Consensus pattern (17 bp):
TTAATCTATTATGTTTA
Found at i:32329238 original size:64 final size:64
Alignment explanation
Indices: 32329137--32329258 Score: 226
Period size: 64 Copynumber: 1.9 Consensus size: 64
32329127 GGTTTCGTGA
*
32329137 CCACACGGGCGTGTGCAGCGCACGGGATTAGGGATTTGGGCGAATGTTGGTGCCACACGGGTGG
1 CCACACGGGCGTGTGCAACGCACGGGATTAGGGATTTGGGCGAATGTTGGTGCCACACGGGTGG
*
32329201 CCACACGGGCGTGTGCAACGCACGGGGTTAGGGATTTGGGCGAATGTTGGTGCCACAC
1 CCACACGGGCGTGTGCAACGCACGGGATTAGGGATTTGGGCGAATGTTGGTGCCACAC
32329259 AGCTTGACCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 56 1.00
ACGTcount: A:0.18, C:0.23, G:0.40, T:0.19
Consensus pattern (64 bp):
CCACACGGGCGTGTGCAACGCACGGGATTAGGGATTTGGGCGAATGTTGGTGCCACACGGGTGG
Found at i:32331165 original size:20 final size:20
Alignment explanation
Indices: 32331127--32331167 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
32331117 GGTGTTGGAA
* *
32331127 TATGAAATTGATGTAAATTG
1 TATGAAAATGATATAAATTG
*
32331147 TATGAAAATGATATCAATTG
1 TATGAAAATGATATAAATTG
32331167 T
1 T
32331168 TTGTGTTTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.41, C:0.02, G:0.17, T:0.39
Consensus pattern (20 bp):
TATGAAAATGATATAAATTG
Found at i:32344796 original size:21 final size:21
Alignment explanation
Indices: 32344757--32344796 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
32344747 CTTGCTTCCC
*
32344757 AAATTTTCATGTTTTTTTCTA
1 AAATTTTCATGTTTGTTTCTA
32344778 AAATTTTCTAT-TTTGTTTC
1 AAATTTTC-ATGTTTGTTTC
32344797 AATTTCATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.23, C:0.10, G:0.05, T:0.62
Consensus pattern (21 bp):
AAATTTTCATGTTTGTTTCTA
Found at i:32350308 original size:18 final size:18
Alignment explanation
Indices: 32350287--32350340 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 18
32350277 CCCCTTTAAA
32350287 TCTCTTTCAATTTTCTTT-
1 TCTCTTTC-ATTTTCTTTC
*
32350305 TCTCTTTTCTTTTTTCTTTC
1 TCTC-TTTC-ATTTTCTTTC
*
32350325 TTTCTTTCATTTTCTT
1 TCTCTTTCATTTTCTT
32350341 CTTTTGCAGG
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
18 11 0.37
19 16 0.53
20 3 0.10
ACGTcount: A:0.06, C:0.22, G:0.00, T:0.72
Consensus pattern (18 bp):
TCTCTTTCATTTTCTTTC
Found at i:32350322 original size:12 final size:12
Alignment explanation
Indices: 32350297--32350345 Score: 55
Period size: 12 Copynumber: 3.9 Consensus size: 12
32350287 TCTCTTTCAA
*
32350297 TTTTCTTTTCTC
1 TTTTCTTTTTTC
32350309 TTTTCTTTTTTC
1 TTTTCTTTTTTC
32350321 -TTTCTTTCTTTC
1 TTTTCTTT-TTTC
32350333 ATTTTCTTCTTTT
1 -TTTTCTT-TTTT
32350346 GCAGGTATTG
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
11 7 0.22
12 15 0.47
14 9 0.28
15 1 0.03
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (12 bp):
TTTTCTTTTTTC
Found at i:32350952 original size:15 final size:15
Alignment explanation
Indices: 32350929--32350969 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
32350919 GTTATTTCGG
32350929 TTTATGTTTAGGG-TCT
1 TTTA-GTTTAGGGAT-T
32350945 TTTAGTTTAGGGATT
1 TTTAGTTTAGGGATT
32350960 TTT-GTTTAGG
1 TTTAGTTTAGG
32350970 TTGTTGAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 7 0.29
15 12 0.50
16 5 0.21
ACGTcount: A:0.15, C:0.02, G:0.27, T:0.56
Consensus pattern (15 bp):
TTTAGTTTAGGGATT
Found at i:32352072 original size:57 final size:56
Alignment explanation
Indices: 32351969--32352122 Score: 159
Period size: 57 Copynumber: 2.8 Consensus size: 56
32351959 TGTAATGAAG
* * * *
32351969 GTGTTGAGGTTGCTGGTAGTAAAGGTGGTGAACGTGTTGTAAGTTTAAATGGAGACA
1 GTGTTGAGGTTGCTGGCAATAAAGGTGGTGAAGGTGGTG-AAGTTTAAATGGAGACA
* ** * **
32352026 GTGTTGAGGTTGCTGGCAATAAAGGTGGTGAGGGTGGTGAATGTTTAGGTGGGGAGG
1 GTGTTGAGGTTGCTGGCAATAAAGGTGGTGAAGGTGGTGAA-GTTTAAATGGAGACA
* * *
32352083 GTGTTGA-GTTGTTAGCAATAAAGATGGT-AAGGTGGTGAAG
1 GTGTTGAGGTTGCTGGCAATAAAGGTGGTGAAGGTGGTGAAG
32352123 GTGGTGAGGG
Statistics
Matches: 82, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
54 1 0.01
55 10 0.12
56 20 0.24
57 51 0.62
ACGTcount: A:0.25, C:0.04, G:0.42, T:0.30
Consensus pattern (56 bp):
GTGTTGAGGTTGCTGGCAATAAAGGTGGTGAAGGTGGTGAAGTTTAAATGGAGACA
Found at i:32353700 original size:31 final size:31
Alignment explanation
Indices: 32353662--32353726 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
32353652 AAGGTAAATA
* *
32353662 ATGCTATTTATTTTTCACCAATTTTTTACTG
1 ATGCTATTTATTTTGCACCAATTTATTACTG
*
32353693 ATGCTATTTATTTTGCACGAATTTATTACTG
1 ATGCTATTTATTTTGCACCAATTTATTACTG
32353724 ATG
1 ATG
32353727 TTTTACTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.25, C:0.14, G:0.11, T:0.51
Consensus pattern (31 bp):
ATGCTATTTATTTTGCACCAATTTATTACTG
Found at i:32362971 original size:22 final size:20
Alignment explanation
Indices: 32362924--32362959 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
32362914 AAGTAGAGAT
32362924 AATT-TATTTTCTAAGTATA
1 AATTCTATTTTCTAAGTATA
32362943 AATTCTATTTTC-AAGTA
1 AATTCTATTTTCTAAGTA
32362960 ATCACAATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 9 0.56
20 7 0.44
ACGTcount: A:0.36, C:0.08, G:0.06, T:0.50
Consensus pattern (20 bp):
AATTCTATTTTCTAAGTATA
Found at i:32404965 original size:20 final size:21
Alignment explanation
Indices: 32404940--32404983 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
32404930 CAATTATCAC
*
32404940 AATTAGATTGA-CAAAATAAA
1 AATTAGAGTGACCAAAATAAA
32404960 AATTAGAGTGACCAAAATAAA
1 AATTAGAGTGACCAAAATAAA
32404981 AAT
1 AAT
32404984 GGTACTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.59, C:0.07, G:0.11, T:0.23
Consensus pattern (21 bp):
AATTAGAGTGACCAAAATAAA
Found at i:32413453 original size:24 final size:25
Alignment explanation
Indices: 32413399--32413453 Score: 69
Period size: 24 Copynumber: 2.2 Consensus size: 25
32413389 GTTGCGCAAT
32413399 TATTAATATGAATGTTTGTATAACA
1 TATTAATATGAATGTTTGTATAACA
*
32413424 TGATTAA-A-GAATGTTTGTATTAGCA
1 T-ATTAATATGAATGTTTGTA-TAACA
32413449 TATTA
1 TATTA
32413454 CTTGCTTGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
24 15 0.56
25 7 0.26
26 5 0.19
ACGTcount: A:0.38, C:0.04, G:0.15, T:0.44
Consensus pattern (25 bp):
TATTAATATGAATGTTTGTATAACA
Found at i:32420383 original size:3 final size:3
Alignment explanation
Indices: 32420375--32420450 Score: 50
Period size: 3 Copynumber: 25.3 Consensus size: 3
32420365 ATAAATAAGT
* * *
32420375 ATA ATA ATA TATC AT- ATA ATA ATA A-A CTA ATA ACA ATA CAGTA ATA
1 ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -A-TA ATA
* * *
32420421 ATA AT- ATA AAA ATA TTA AAA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
32420451 ATAAAAAACT
Statistics
Matches: 56, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
2 5 0.09
3 45 0.80
4 4 0.07
5 2 0.04
ACGTcount: A:0.63, C:0.05, G:0.01, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:32420412 original size:14 final size:14
Alignment explanation
Indices: 32420390--32420475 Score: 50
Period size: 14 Copynumber: 6.1 Consensus size: 14
32420380 AATATATCAT
32420390 ATAATAATAAACTA
1 ATAATAATAAACTA
* * *
32420404 ATAACAATACAGTA
1 ATAATAATAAACTA
*
32420418 ATAATAATATAA-AA
1 ATAATAATA-AACTA
* * *
32420432 ATATTAAAAATAATA
1 ATAATAATAA-ACTA
*
32420447 ATAAATAAAAAACTA
1 AT-AATAATAAACTA
*
32420462 A-AATAACAAACTA
1 ATAATAATAAACTA
32420475 A
1 A
32420476 AGGTTAAGTA
Statistics
Matches: 56, Mismatches: 12, Indels: 9
0.73 0.16 0.12
Matches are distributed among these distances:
13 13 0.23
14 28 0.50
15 8 0.14
16 7 0.12
ACGTcount: A:0.67, C:0.07, G:0.01, T:0.24
Consensus pattern (14 bp):
ATAATAATAAACTA
Found at i:32424294 original size:75 final size:72
Alignment explanation
Indices: 32424152--32424301 Score: 221
Period size: 75 Copynumber: 2.0 Consensus size: 72
32424142 CAGTTGTCCC
* *
32424152 ATAATTTTTTGACGTCATAGGAAACAGGTTGACATGTTTGCAACGTGTTGACTGCTTCTATTAGG
1 ATAATTTTTTGACGTCATAGGAAACAGGTTGACATGATCGCAACGTGTTGACTGCTTCTATTAGG
32424217 ATTTTGT
66 ATTTTGT
* *
32424224 ATAATTTTTTGACGTCAT-GTGAAACAGGTTGACAACATGATCGCAACTTGTTGACTGCTTCTGT
1 ATAATTTTTTGACGTCATAG-GAAACAGGTTG---ACATGATCGCAACGTGTTGACTGCTTCTAT
32424288 TAGGATTTTGT
62 TAGGATTTTGT
32424299 ATA
1 ATA
32424302 TAAATTACTA
Statistics
Matches: 70, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
71 1 0.01
72 29 0.41
75 40 0.57
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.39
Consensus pattern (72 bp):
ATAATTTTTTGACGTCATAGGAAACAGGTTGACATGATCGCAACGTGTTGACTGCTTCTATTAGG
ATTTTGT
Found at i:32424675 original size:105 final size:108
Alignment explanation
Indices: 32424493--32425243 Score: 474
Period size: 108 Copynumber: 6.8 Consensus size: 108
32424483 GACAAAAAAT
* * * *
32424493 TATCCTAACCTTTTTAAGTTTGCCTTAGACGAGTTTA-CCCTAACCTTTTTAAGGTTGCCTTAGA
1 TATCCCAACCTTTTTAAGGTTGCCTTAGACGAGTCTATCCC-AACCTTTTTAAGGTTGCCTTAAA
** * *
32424557 TGAGTTTATCCCAA-CTTTTT-TAAGTTACCTTGGA-AAAGGTC
65 TGAGTCAATCCCAACCTTTTTAAAAGTTACCTTAGACAAAGGTC
* * * * *
32424598 TATCCCAACATTTTTAAGGTTGCTTTAAACGAGTCTATCCCAACATTTTTAAGGTTGTCTTAAAT
1 TATCCCAACCTTTTTAAGGTTGCCTTAGACGAGTCTATCCCAACCTTTTTAAGGTTGCCTTAAAT
*
32424663 GAGTCAATCCCAACCTTTTTAAAAGTTGCCTTAGACAAAGGTC
66 GAGTCAATCCCAACCTTTTTAAAAGTTACCTTAGACAAAGGTC
* * * * * *
32424706 TATCCCCACCTTTTTAAGGTTACCTTAGACAAGTCTATCCCAACCTTTTTAAGGTTGCTTTAGAC
1 TATCCCAACCTTTTTAAGGTTGCCTTAGACGAGTCTATCCCAACCTTTTTAAGGTTGCCTTAAAT
* * * * * *
32424771 AAGTCTATCCTAACCTTTTTTGAAGGTTTCCTTAGAC-AAGGTC
66 GAGTCAATCCCAACC-TTTTTAAAAGTTACCTTAGACAAAGGTC
* ** * *
32424814 TATCCTAATTTTTTTTAAAAGGTTGCCTTAAACTG-GTCTATCCTAACCTTTTTTAAAGGTTGCC
1 TATCCCAA-CCTTTTT--AAGGTTGCCTTAGAC-GAGTCTATCCCAACC-TTTTT-AAGGTTGCC
* * * *
32424878 TTAGACAAG-GTCTATCCCAA-CTTTGTTAAAAGGTTGCCTTAGAC-TA-GTC
60 TTA-A-ATGAGTCAATCCCAACCTTT-TTAAAA-GTTACCTTAGACAAAGGTC
* * * * * *
32424927 CATCTCAACCTTTTTTAAAAGTTGTCTTAGACAATGTCTATCCAAACCTTTTTAAGGTTGCCTTA
1 TATCCCAACC-TTTTT-AAGGTTGCCTTAGACGA-GTCTATCCCAACCTTTTTAAGGTTGCCTTA
* * * * * * *
32424992 GACA-GTGTCTATCCAAACCTTTTT-AAGGTTGCCTTAGAC-GA-TTC
63 -A-ATGAGTCAATCCCAACCTTTTTAAAAGTTACCTTAGACAAAGGTC
* * * * *
32425036 TATCCCAATCTTTTTTAAAGGTTTCCTTAGACAAGGTCTATCCCAACTGTTTTTTAAAGGTTACC
1 TATCCCAA-CCTTTTT-AAGGTTGCCTTAGACGA-GTCTATCCCAAC--CTTTTT-AAGGTTGCC
* * * * * *
32425101 CTAGACAAG-GTCTATCCCAACTTTTTTTAAAGGTTGCCTTAGAC-AAGGTC
60 TTA-A-ATGAGTCAATCCCAAC-CTTTTTAAAAGTTACCTTAGACAAAGGTC
** * ** *
32425151 TATCTTAACTTTTTTTAAAAGGTTATCTTAGACTG-GTCTATCCCAACCTCTTTAAGGTTGCCTT
1 TATCCCAAC-CTTTTT--AAGGTTGCCTTAGAC-GAGTCTATCCCAACCTTTTTAAGGTTGCCTT
* * * * * *
32425215 AGACGGGTCTATACCAACCTTTTTCAAAG
62 AAATGAGTCAATCCCAACCTTTTTAAAAG
32425244 GTTGGCCTTG
Statistics
Matches: 522, Mismatches: 92, Indels: 59
0.78 0.14 0.09
Matches are distributed among these distances:
105 63 0.12
106 9 0.02
107 11 0.02
108 85 0.16
109 75 0.14
110 14 0.03
111 69 0.13
112 65 0.12
113 51 0.10
114 39 0.07
115 27 0.05
116 14 0.03
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (108 bp):
TATCCCAACCTTTTTAAGGTTGCCTTAGACGAGTCTATCCCAACCTTTTTAAGGTTGCCTTAAAT
GAGTCAATCCCAACCTTTTTAAAAGTTACCTTAGACAAAGGTC
Found at i:32424717 original size:38 final size:37
Alignment explanation
Indices: 32424493--32425271 Score: 658
Period size: 35 Copynumber: 21.3 Consensus size: 37
32424483 GACAAAAAAT
* * * *
32424493 TATCCTAACCTTTTT-AAGTTTGCCTTAGACGA-GTT
1 TATCCCAACCTTTTTAAAGGTTGCCTTAGACAAGGTC
** *
32424528 TA-CCCTAACCTTTTT-AAGGTTGCCTTAGATGA-GTT
1 TATCCC-AACCTTTTTAAAGGTTGCCTTAGACAAGGTC
* * * *
32424563 TATCCCAA-CTTTTTTAA-GTTACCTTGGAAAAGGTC
1 TATCCCAACCTTTTTAAAGGTTGCCTTAGACAAGGTC
* * * *
32424598 TATCCCAACATTTTT-AAGGTTGCTTTAAACGA-GTC
1 TATCCCAACCTTTTTAAAGGTTGCCTTAGACAAGGTC
* * *
32424633 TATCCCAACATTTTT-AAGGTTGTCTTA-A-ATGAGTC
1 TATCCCAACCTTTTTAAAGGTTGCCTTAGACAAG-GTC
* *
32424668 AATCCCAACCTTTTTAAAAGTTGCCTTAGACAAAGGTC
1 TATCCCAACCTTTTTAAAGGTTGCCTTAGAC-AAGGTC
* *
32424706 TATCCCCACCTTTTT-AAGGTTACCTTAGACAA-GTC
1 TATCCCAACCTTTTTAAAGGTTGCCTTAGACAAGGTC
*
32424741 TATCCCAACCTTTTT-AAGGTTGCTTTAGACAA-GTC
1 TATCCCAACCTTTTTAAAGGTTGCCTTAGACAAGGTC
* * *
32424776 TATCCTAACCTTTTTTGAAGGTTTCCTTAGACAAGGTC
1 TATCCCAACC-TTTTTAAAGGTTGCCTTAGACAAGGTC
* ** * *
32424814 TATCCTAATTTTTTTTAAAAGGTTGCCTTAAAC-TGGTC
1 TATCCCAA-CCTTTTT-AAAGGTTGCCTTAGACAAGGTC
*
32424852 TATCCTAACCTTTTTTAAAGGTTGCCTTAGACAAGGTC
1 TATCCCAACC-TTTTTAAAGGTTGCCTTAGACAAGGTC
*
32424890 TATCCCAA-CTTTGTTAAAAGGTTGCCTTAGACTA-GTC
1 TATCCCAACCTTT-TT-AAAGGTTGCCTTAGACAAGGTC
* * * * *
32424927 CATCTCAACCTTTTTTAAAAGTTGTCTTAGACAATGTC
1 TATCCCAACC-TTTTTAAAGGTTGCCTTAGACAAGGTC
*
32424965 TATCCAAACCTTTTT-AAGGTTGCCTTAGAC-AGTGTC
1 TATCCCAACCTTTTTAAAGGTTGCCTTAGACAAG-GTC
* * *
32425001 TATCCAAACCTTTTT-AAGGTTGCCTTAGACGA-TTC
1 TATCCCAACCTTTTTAAAGGTTGCCTTAGACAAGGTC
* *
32425036 TATCCCAATCTTTTTTAAAGGTTTCCTTAGACAAGGTC
1 TATCCCAA-CCTTTTTAAAGGTTGCCTTAGACAAGGTC
* * *
32425074 TATCCCAACTGTTTTTTAAAGGTTACCCTAGACAAGGTC
1 TATCCCAAC--CTTTTTAAAGGTTGCCTTAGACAAGGTC
*
32425113 TATCCCAACTTTTTTTAAAGGTTGCCTTAGACAAGGTC
1 TATCCCAAC-CTTTTTAAAGGTTGCCTTAGACAAGGTC
** * ** *
32425151 TATCTTAACTTTTTTTAAAAGGTTATCTTAGAC-TGGTC
1 TATCCCAAC-CTTTTT-AAAGGTTGCCTTAGACAAGGTC
* *
32425189 TATCCCAACCTCTTT-AAGGTTGCCTTAGAC-GGGTC
1 TATCCCAACCTTTTTAAAGGTTGCCTTAGACAAGGTC
* *
32425224 TATACCAACCTTTTTCAAAGGTTGGCCTT-GACTAGGTC
1 TATCCCAACCTTTTT-AAAGGTT-GCCTTAGACAAGGTC
* *
32425262 TTTTCCAACC
1 TATCCCAACC
32425272 CTTCAATAAG
Statistics
Matches: 623, Mismatches: 85, Indels: 69
0.80 0.11 0.09
Matches are distributed among these distances:
34 19 0.03
35 175 0.28
36 88 0.14
37 106 0.17
38 168 0.27
39 67 0.11
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.38
Consensus pattern (37 bp):
TATCCCAACCTTTTTAAAGGTTGCCTTAGACAAGGTC
Found at i:32425108 original size:223 final size:223
Alignment explanation
Indices: 32424534--32425262 Score: 750
Period size: 223 Copynumber: 3.3 Consensus size: 223
32424524 AGTTTACCCT
* * * * * *
32424534 AACCTTTTTAAGGTTGCCTTAGA-TGAGTTTATCCCAA-CTTTTTTAA-GTTACCTTGGAAAAGG
1 AACCTTTTTAAGGTTGCCTTAGACAGAGTCTAT-CCAACCTTTTTAAAGGTTGCCTTAGACAAGG
* * * *
32424596 TCTATCCCAA-CATTTTT--AAGGTTGCTTTAAAC-GAGTCTATCCCAA-CATTTTT-AAGGTTG
65 TCTATCCCAATCTTTTTTAAAAGGTTGCCTTAAACAG-GTCTATCCCAACCTTTTTTAAAGGTTA
* * * * * *
32424655 TCTTA-A-ATGAGTCAATCCCAACCTTTTTAAAA-GTTGCCTTAGACAAAGGTCTATCCCCACC-
129 CCCTAGACAAG-GTCTATCCCAA-CTTTTTAAAAGGTTGCCTTAGAC-AAGGTCTATCTCAACCT
* *
32424716 TTTTT-AAGGTTACCTTAGACAA-GTCTATCCC
191 TTTTTAAAAGTTATCTTAGACAATGTCTATCCC
* * *
32424747 AACCTTTTTAAGGTTGCTTTAGACA-AGTCTATCCTAACCTTTTTTGAAGGTTTCCTTAGACAAG
1 AACCTTTTTAAGGTTGCCTTAGACAGAGTCTATCC-AACC-TTTTTAAAGGTTGCCTTAGACAAG
* * * * *
32424811 GTCTATCCTAATTTTTTTTAAAAGGTTGCCTTAAACTGGTCTATCCTAACCTTTTTTAAAGGTTG
64 GTCTATCCCAATCTTTTTTAAAAGGTTGCCTTAAACAGGTCTATCCCAACCTTTTTTAAAGGTTA
* * *
32424876 CCTTAGACAAGGTCTATCCCAACTTTGTTAAAAGGTTGCCTTAGACTA-GTCCATCTCAACCTTT
129 CCCTAGACAAGGTCTATCCCAACTTT-TTAAAAGGTTGCCTTAGACAAGGTCTATCTCAACCTTT
* *
32424940 TTTAAAAGTTGTCTTAGACAATGTCTATCCA
193 TTTAAAAGTTATCTTAGACAATGTCTATCCC
* * *
32424971 AACCTTTTTAAGGTTGCCTTAGACAGTGTCTATCCAAACCTTTTT-AAGGTTGCCTTAGACGA-T
1 AACCTTTTTAAGGTTGCCTTAGACAGAGTCTATCC-AACCTTTTTAAAGGTTGCCTTAGACAAGG
* * *
32425034 TCTATCCCAATCTTTTTT-AAAGGTTTCCTTAGACAAGGTCTATCCCAACTGTTTTTTAAAGGTT
65 TCTATCCCAATCTTTTTTAAAAGGTTGCCTTAAAC-AGGTCTATCCCAAC-CTTTTTTAAAGGTT
* * *
32425098 ACCCTAGACAAGGTCTATCCCAACTTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCTTAACTTT
128 ACCCTAGACAAGGTCTATCCCAAC-TTTTTAAAAGGTTGCCTTAGACAAGGTCTATCTCAACCTT
32425163 TTTTAAAAGGTTATCTTAGAC--TGGTCTATCCC
192 TTTTAAAA-GTTATCTTAGACAAT-GTCTATCCC
* * *
32425195 AACCTCTTTAAGGTTGCCTTAGAC-GGGTCTATACCAACCTTTTTCAAAGGTTGGCCTT-GACTA
1 AACCTTTTTAAGGTTGCCTTAGACAGAGTCTAT-CCAACCTTTTT-AAAGGTT-GCCTTAGACAA
32425258 GGTCT
63 GGTCT
32425263 TTTCCAACCC
Statistics
Matches: 436, Mismatches: 50, Indels: 47
0.82 0.09 0.09
Matches are distributed among these distances:
212 2 0.00
213 30 0.07
214 1 0.00
215 7 0.02
216 22 0.05
217 5 0.01
219 24 0.06
220 7 0.02
221 39 0.09
222 51 0.12
223 114 0.26
224 93 0.21
225 33 0.08
226 8 0.02
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.37
Consensus pattern (223 bp):
AACCTTTTTAAGGTTGCCTTAGACAGAGTCTATCCAACCTTTTTAAAGGTTGCCTTAGACAAGGT
CTATCCCAATCTTTTTTAAAAGGTTGCCTTAAACAGGTCTATCCCAACCTTTTTTAAAGGTTACC
CTAGACAAGGTCTATCCCAACTTTTTAAAAGGTTGCCTTAGACAAGGTCTATCTCAACCTTTTTT
AAAAGTTATCTTAGACAATGTCTATCCC
Found at i:32425218 original size:260 final size:254
Alignment explanation
Indices: 32424493--32425252 Score: 837
Period size: 260 Copynumber: 3.0 Consensus size: 254
32424483 GACAAAAAAT
* * * *
32424493 TATCCTAACCTTTTTAAGTTTGCCTTAGACGAGTT-TA-CCCTAACCTTTTTAAGGTTGCCTTAG
1 TATCCAAACCTTTTTAAGGTTGCCTTAGACGA-TTCTATCCC-AACTTTTTTAAGGTTTCCTTAG
** * * * *
32424556 ATGA-GTTTATCCCAAC-TTTTTT-AA-GTTACCTTGGAAAAGGTCTATCCCAACATTTTT-AAG
64 ACAAGGTCTATCCCAACTTTTTTTAAAGGTTACCTTAGACAAGGTCTATCCCAACTTTTTTAAAG
* * * * *
32424616 GTTGCTTTAAACGA-GTCTATCCCAACATTTTT--AAGGTTGTCTTA-AATGAGTCAATCCCAAC
129 GTTGCCTTAGACAAGGTCTATCCCAACTTTTTTAAAAGGTTGTCTTAGACTG-GTCAATCCCAAC
* *
32424677 CTTTTTAAAAGTTGCCTTAGACAAAGGTCTATCCCCACCTTTTTAAGGTTACCTTAGACAAGTC
193 CTTTTTAAAAGTTGCCTTAGAC-AAGGTCTAT-CCAACCTTTTTAAGGTTGCCTTAGACAAGTC
* * * * *
32424741 TATCCCAACCTTTTTAAGGTTGCTTTAGACAAGTCTATCCTAACCTTTTTTGAAGGTTTCCTTAG
1 TATCCAAACCTTTTTAAGGTTGCCTTAGACGATTCTATCCCAA-CTTTTTT-AAGGTTTCCTTAG
* * * * * *
32424806 ACAAGGTCTATCCTAATTTTTTTTAAAAGGTTGCCTTAAAC-TGGTCTATCCTAACCTTTTTTAA
64 ACAAGGTCTATCCCAACTTTTTTT-AAAGGTTACCTTAGACAAGGTCTATCCCAA-CTTTTTTAA
* * * * *
32424870 AGGTTGCCTTAGACAAGGTCTATCCCAACTTTGTTAAAAGGTTGCCTTAGACTAGTCCATCTCAA
127 AGGTTGCCTTAGACAAGGTCTATCCCAACTTTTTTAAAAGGTTGTCTTAGACTGGTCAATCCCAA
* * *
32424935 CCTTTTTTAAAAGTTGTCTTAGACAATGTCTATCCAAACCTTTTTAAGGTTGCCTTAGACAGTGT
192 CC-TTTTTAAAAGTTGCCTTAGACAAGGTCTATCC-AACCTTTTTAAGGTTGCCTTAGACA-AGT
32425000 C
254 C
32425001 TATCCAAACCTTTTTAAGGTTGCCTTAGACGATTCTATCCCAATCTTTTTTAAAGGTTTCCTTAG
1 TATCCAAACCTTTTTAAGGTTGCCTTAGACGATTCTATCCCAA-CTTTTTT-AAGGTTTCCTTAG
*
32425066 ACAAGGTCTATCCCAACTGTTTTTTAAAGGTTACCCTAGACAAGGTCTATCCCAACTTTTTTTAA
64 ACAAGGTCTATCCCAACT-TTTTTTAAAGGTTACCTTAGACAAGGTCTATCCCAAC-TTTTTTAA
** * *
32425131 AGGTTGCCTTAGACAAGGTCTATCTTAACTTTTTTTAAAAGGTTATCTTAGACTGGTCTATCCCA
127 AGGTTGCCTTAGACAAGGTCTATCCCAAC-TTTTTTAAAAGGTTGTCTTAGACTGGTCAATCCCA
* * *
32425196 ACCTCTTT-AAGGTTGCCTTAGAC-GGGTCTATACCAACCTTTTTCAAAGGTTGGCCTT
191 ACCTTTTTAAAAGTTGCCTTAGACAAGGTCTAT-CCAACCTTTTT--AAGGTT-GCCTT
32425253 GACTAGGTCT
Statistics
Matches: 424, Mismatches: 62, Indels: 38
0.81 0.12 0.07
Matches are distributed among these distances:
247 1 0.00
248 32 0.08
249 8 0.02
250 14 0.03
251 9 0.02
252 6 0.01
254 13 0.03
255 14 0.03
256 14 0.03
257 16 0.04
258 2 0.00
259 68 0.16
260 128 0.30
261 62 0.15
262 37 0.09
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (254 bp):
TATCCAAACCTTTTTAAGGTTGCCTTAGACGATTCTATCCCAACTTTTTTAAGGTTTCCTTAGAC
AAGGTCTATCCCAACTTTTTTTAAAGGTTACCTTAGACAAGGTCTATCCCAACTTTTTTAAAGGT
TGCCTTAGACAAGGTCTATCCCAACTTTTTTAAAAGGTTGTCTTAGACTGGTCAATCCCAACCTT
TTTAAAAGTTGCCTTAGACAAGGTCTATCCAACCTTTTTAAGGTTGCCTTAGACAAGTC
Found at i:32448255 original size:50 final size:50
Alignment explanation
Indices: 32448123--32448313 Score: 251
Period size: 50 Copynumber: 3.8 Consensus size: 50
32448113 ATTTAATTAA
* * * * *
32448123 GATGCAAAC-TAAATGAACA-AATGAGTTACTTATTGCATGACTTAATTTAAT
1 GATGCAAACTTAACT-AACATAA-GAGTTACATAATGCATGTCATAATTT-AT
* * **
32448174 GATGTAGACTTAAACTAACATGGGAGTTACATAATGCATGTCATAATTTAT
1 GATGCAAACTT-AACTAACATAAGAGTTACATAATGCATGTCATAATTTAT
32448225 GATGCAAACTTAACTAACATAAGAGTTACATAATGCATGTCATAATTTAT
1 GATGCAAACTTAACTAACATAAGAGTTACATAATGCATGTCATAATTTAT
32448275 GATGCAAACTTAACTAACATAAGAGTTACATAATGCATG
1 GATGCAAACTTAACTAACATAAGAGTTACATAATGCATG
32448314 ACTTTATTAA
Statistics
Matches: 124, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
50 76 0.61
51 18 0.15
52 27 0.22
53 3 0.02
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.31
Consensus pattern (50 bp):
GATGCAAACTTAACTAACATAAGAGTTACATAATGCATGTCATAATTTAT
Found at i:32448262 original size:102 final size:100
Alignment explanation
Indices: 32448123--32448313 Score: 251
Period size: 102 Copynumber: 1.9 Consensus size: 100
32448113 ATTTAATTAA
* * * * *
32448123 GATGCAAACTAAATGAACAAATGAGTTACTTATTGCATGACTTAATTTAATGATGTAGACTTAAA
1 GATGCAAACTAAATGAACAAATGAGTTACATAATGCATGACATAATTT-ATGATGCAAACTT-AA
**
32448188 CTAACATGGGAGTTACATAATGCATGTCATAATTTAT
64 CTAACATAAGAGTTACATAATGCATGTCATAATTTAT
* *
32448225 GATGCAAACTTAACT-AACATAA-GAGTTACATAATGCATGTCATAATTTATGATGCAAACTTAA
1 GATGCAAAC-TAAATGAACA-AATGAGTTACATAATGCATGACATAATTTATGATGCAAACTTAA
32448288 CTAACATAAGAGTTACATAATGCATG
64 CTAACATAAGAGTTACATAATGCATG
32448314 ACTTTATTAA
Statistics
Matches: 78, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
100 26 0.33
101 11 0.14
102 35 0.45
103 6 0.08
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.31
Consensus pattern (100 bp):
GATGCAAACTAAATGAACAAATGAGTTACATAATGCATGACATAATTTATGATGCAAACTTAACT
AACATAAGAGTTACATAATGCATGTCATAATTTAT
Found at i:32470488 original size:18 final size:18
Alignment explanation
Indices: 32470465--32470499 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
32470455 CTAGGTATTT
32470465 AAAATTTTACAAATTGGG
1 AAAATTTTACAAATTGGG
32470483 AAAATTTTACAAATTGG
1 AAAATTTTACAAATTGG
32470500 ACCACTTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.06, G:0.14, T:0.34
Consensus pattern (18 bp):
AAAATTTTACAAATTGGG
Found at i:32471410 original size:33 final size:34
Alignment explanation
Indices: 32471359--32471433 Score: 125
Period size: 33 Copynumber: 2.2 Consensus size: 34
32471349 AGATTTAAAC
32471359 AAATTAATTACTAACACTTATTTAAGCTGAACTA
1 AAATTAATTACTAACACTTATTTAAGCTGAACTA
*
32471393 AAATTAATT-CTAACACTTATTTGAGCTGAACTA
1 AAATTAATTACTAACACTTATTTAAGCTGAACTA
*
32471426 AATTTAAT
1 AAATTAAT
32471434 AAACTAACTC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
33 30 0.77
34 9 0.23
ACGTcount: A:0.43, C:0.13, G:0.07, T:0.37
Consensus pattern (34 bp):
AAATTAATTACTAACACTTATTTAAGCTGAACTA
Found at i:32480292 original size:29 final size:29
Alignment explanation
Indices: 32480229--32480296 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
32480219 TAATCAACCG
*
32480229 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
32480258 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
32480287 CGCACACTTA
1 CGCACACTTA
32480297 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:32480408 original size:174 final size:174
Alignment explanation
Indices: 32480118--32480650 Score: 1048
Period size: 174 Copynumber: 3.1 Consensus size: 174
32480108 AACTCAAGGT
* *
32480118 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
32480183 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
32480248 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
32480292 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
32480357 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
32480422 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
32480466 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
32480531 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
32480596 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
32480640 ACTTACCTTTT
1 ACTTACCTTTT
32480651 TACATTCGAC
Statistics
Matches: 357, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
174 357 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.31
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:32480466 original size:29 final size:29
Alignment explanation
Indices: 32480403--32480470 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
32480393 TAATCAACCG
*
32480403 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
32480432 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
32480461 CGCACACTTA
1 CGCACACTTA
32480471 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:32480640 original size:29 final size:29
Alignment explanation
Indices: 32480577--32480644 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
32480567 TAATCAACCG
*
32480577 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
32480606 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
32480635 CGCACACTTA
1 CGCACACTTA
32480645 CCTTTTTACA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:32489977 original size:29 final size:29
Alignment explanation
Indices: 32489914--32489981 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
32489904 TAATCAACCG
*
32489914 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
32489943 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
32489972 CGCACACTTA
1 CGCACACTTA
32489982 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:32490151 original size:29 final size:29
Alignment explanation
Indices: 32490088--32490155 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
32490078 TAATCAACCG
*
32490088 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
32490117 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
32490146 CGCACACTTA
1 CGCACACTTA
32490156 CCTTTTCGCT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:32490278 original size:173 final size:174
Alignment explanation
Indices: 32489803--32490334 Score: 1021
Period size: 174 Copynumber: 3.1 Consensus size: 174
32489793 AACTCAAGGT
* *
32489803 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
32489868 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
32489933 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
32489977 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
32490042 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
32490107 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
32490151 ACTTACCTTTT-CGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
32490215 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
**
32490280 ACTTTAAACTCTTACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
32490324 ACTTACCTTTT
1 ACTTACCTTTT
32490335 TACATTCGAC
Statistics
Matches: 354, Mismatches: 4, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
173 171 0.48
174 183 0.52
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.31
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:32490325 original size:29 final size:29
Alignment explanation
Indices: 32490261--32490328 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
32490251 TAATCAACCG
*
32490261 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
** **
32490290 CTTACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
32490319 CGCACACTTA
1 CGCACACTTA
32490329 CCTTTTTACA
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
28 3 0.10
29 28 0.90
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.32
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:32496464 original size:119 final size:120
Alignment explanation
Indices: 32496288--32496510 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
32496278 TACTCGTTCA
* *
32496288 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
*
32496353 ATAGT-AACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTCAACTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * *
32496408 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGG
* ** *
32496470 ATATGGTCAGTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTCAACTAGCACAAAGCCTTCGGGACTTAACCCGGA
32496511 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 65 0.72
120 21 0.23
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
ATAGTCAACTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:32496510 original size:40 final size:40
Alignment explanation
Indices: 32496267--32496510 Score: 291
Period size: 40 Copynumber: 6.1 Consensus size: 40
32496257 CGGAATTTAA
** *
32496267 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
32496307 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
32496347 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
32496387 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
32496426 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* ** *
32496466 CCGGATATGGTCAGTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGT-AACTCGCACAAATGCCTTCGGGACTTAGC
32496506 CCGGA
1 CCGGA
32496511 CATCATTCAA
Statistics
Matches: 179, Mismatches: 18, Indels: 14
0.85 0.09 0.07
Matches are distributed among these distances:
38 2 0.01
39 32 0.18
40 132 0.74
41 13 0.07
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:32498260 original size:24 final size:24
Alignment explanation
Indices: 32498228--32498282 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
32498218 GGCTGTCACA
32498228 GAAATGGTATGAGATTTGTGGTAC
1 GAAATGGTATGAGATTTGTGGTAC
* * *
32498252 GAAATGGTATGGGATTTTTGGTAT
1 GAAATGGTATGAGATTTGTGGTAC
32498276 GAAATGG
1 GAAATGG
32498283 ATCAAAAAGG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.29, C:0.02, G:0.35, T:0.35
Consensus pattern (24 bp):
GAAATGGTATGAGATTTGTGGTAC
Found at i:32499922 original size:20 final size:20
Alignment explanation
Indices: 32499899--32499944 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
32499889 TCAGCTCCGA
*
32499899 TCAGCTCATTTGAGCTCAAT
1 TCAGCTCATTCGAGCTCAAT
*
32499919 TCAGCTCGTTCGAGCTCAAT
1 TCAGCTCATTCGAGCTCAAT
*
32499939 TTAGCT
1 TCAGCT
32499945 TTCTATCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (20 bp):
TCAGCTCATTCGAGCTCAAT
Found at i:32499935 original size:30 final size:30
Alignment explanation
Indices: 32499878--32499944 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 30
32499868 TTCCAGCTCC
**
32499878 TTTAGCTCGTTTCAGCTCCGATCAGCTC-A
1 TTTAGCTCAATTCAGCTCCGATCAGCTCAA
*
32499907 TTTGAGCTCAATTCAGCT-CGTTCGAGCTCAA
1 TTT-AGCTCAATTCAGCTCCGATC-AGCTCAA
32499938 TTTAGCT
1 TTTAGCT
32499945 TTCTATCAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
29 7 0.22
30 21 0.66
31 4 0.12
ACGTcount: A:0.19, C:0.27, G:0.18, T:0.36
Consensus pattern (30 bp):
TTTAGCTCAATTCAGCTCCGATCAGCTCAA
Found at i:32501566 original size:23 final size:23
Alignment explanation
Indices: 32501507--32501575 Score: 77
Period size: 22 Copynumber: 3.0 Consensus size: 23
32501497 TCGAAGATAG
* *
32501507 TTTAGGTTTAGGCACGTAATGG-
1 TTTAGGTTTAGGTACGAAATGGT
* *
32501529 TTTAAGTTTAAGTACGAAATGGT
1 TTTAGGTTTAGGTACGAAATGGT
*
32501552 TTTTGGTTTAGGTACGATAATGGT
1 TTTAGGTTTAGGTACGA-AATGGT
32501576 ATGGTTTTGG
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
22 18 0.47
23 14 0.37
24 6 0.16
ACGTcount: A:0.26, C:0.06, G:0.28, T:0.41
Consensus pattern (23 bp):
TTTAGGTTTAGGTACGAAATGGT
Found at i:32515387 original size:24 final size:24
Alignment explanation
Indices: 32515354--32515408 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
32515344 AAGTTTTTGG
* *
32515354 AAAAAAATTTTGAATAGTAATTTTT
1 AAAAAATTTTTGAAT-CTAATTTTT
* *
32515379 AAAATATTTTTTAATCTAATTTTT
1 AAAAAATTTTTGAATCTAATTTTT
32515403 AAAAAA
1 AAAAAA
32515409 GGAATAAAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
24 13 0.52
25 12 0.48
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (24 bp):
AAAAAATTTTTGAATCTAATTTTT
Found at i:32516704 original size:24 final size:25
Alignment explanation
Indices: 32516660--32516707 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
32516650 TGAGTATATA
32516660 AACATAAAAAATTAATAATTTAAAC
1 AACATAAAAAATTAATAATTTAAAC
*
32516685 AACAT-AATAATTAACT-ATTTAAA
1 AACATAAAAAATTAA-TAATTTAAA
32516708 ATTAAATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 15 0.71
25 6 0.29
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.31
Consensus pattern (25 bp):
AACATAAAAAATTAATAATTTAAAC
Found at i:32518441 original size:16 final size:17
Alignment explanation
Indices: 32518408--32518447 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
32518398 TATAATATTT
32518408 AAAAGTTAAAACTAAAAA
1 AAAAG-TAAAACTAAAAA
*
32518426 TAAAGTAAAA-TAAAAA
1 AAAAGTAAAACTAAAAA
32518442 AAAAGT
1 AAAAGT
32518448 CAGAGAGTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 11 0.55
17 5 0.25
18 4 0.20
ACGTcount: A:0.72, C:0.03, G:0.07, T:0.17
Consensus pattern (17 bp):
AAAAGTAAAACTAAAAA
Found at i:32519396 original size:5 final size:5
Alignment explanation
Indices: 32519382--32519415 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
32519372 AATTATGCAA
*
32519382 AAAAG TAAAG AAAAG AAAAG AAAAG -AAAG AAAAG
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG
32519416 CAATTTGATC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (5 bp):
AAAAG
Found at i:32519400 original size:15 final size:14
Alignment explanation
Indices: 32519382--32519415 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
32519372 AATTATGCAA
*
32519382 AAAAGTAAAGAAAAG
1 AAAAGAAAAG-AAAG
32519397 AAAAGAAAAGAAAG
1 AAAAGAAAAGAAAG
32519411 AAAAG
1 AAAAG
32519416 CAATTTGATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (14 bp):
AAAAGAAAAGAAAG
Found at i:32524181 original size:19 final size:19
Alignment explanation
Indices: 32524157--32524213 Score: 69
Period size: 22 Copynumber: 2.8 Consensus size: 19
32524147 AATCTTCAAG
32524157 GATATGCAATCATAGATAT
1 GATATGCAATCATAGATAT
*
32524176 GATATGCAATCTTAGAGGATAT
1 GATATGCAATC--ATA-GATAT
*
32524198 GATATGCAATCTTAGA
1 GATATGCAATCATAGA
32524214 GGATATGATT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
19 13 0.41
20 1 0.03
21 2 0.06
22 16 0.50
ACGTcount: A:0.39, C:0.11, G:0.19, T:0.32
Consensus pattern (19 bp):
GATATGCAATCATAGATAT
Found at i:32524235 original size:23 final size:22
Alignment explanation
Indices: 32524171--32524237 Score: 107
Period size: 22 Copynumber: 3.0 Consensus size: 22
32524161 TGCAATCATA
32524171 GATATGATATGCAATCTTAGAG
1 GATATGATATGCAATCTTAGAG
32524193 GATATGATATGCAATCTTAGAG
1 GATATGATATGCAATCTTAGAG
* *
32524215 GATATGATTTTGTAATCTTAGAG
1 GATATGA-TATGCAATCTTAGAG
32524238 ATTTAATTTG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
22 29 0.69
23 13 0.31
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.36
Consensus pattern (22 bp):
GATATGATATGCAATCTTAGAG
Found at i:32524249 original size:21 final size:23
Alignment explanation
Indices: 32524183--32524249 Score: 77
Period size: 22 Copynumber: 3.0 Consensus size: 23
32524173 TATGATATGC
* *
32524183 AATCTTAGAGGATATG-ATATGC
1 AATCTTAGAGGATATGAATTTGT
*
32524205 AATCTTAGAGGATATGATTTTGT
1 AATCTTAGAGGATATGAATTTGT
*
32524228 AATCTTAGA-GAT-TTAATTTGT
1 AATCTTAGAGGATATGAATTTGT
32524249 A
1 A
32524250 GATATCCTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
21 8 0.21
22 19 0.49
23 12 0.31
ACGTcount: A:0.34, C:0.06, G:0.19, T:0.40
Consensus pattern (23 bp):
AATCTTAGAGGATATGAATTTGT
Found at i:32524853 original size:37 final size:37
Alignment explanation
Indices: 32524777--32524853 Score: 86
Period size: 37 Copynumber: 2.1 Consensus size: 37
32524767 CATACATACG
*
32524777 TTTTATAATATATACATATACGTACACATTTTTTAATT
1 TTTTATAATATATACATATACG-ACACATTTTATAATT
* *
32524815 TTTTATAA-ATATATATATAC-ACATACTTTTATATATT
1 TTTTATAATATATACATATACGACACA-TTTTATA-ATT
32524852 TT
1 TT
32524854 CTATGTTTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
35 4 0.12
36 6 0.18
37 16 0.47
38 8 0.24
ACGTcount: A:0.38, C:0.09, G:0.01, T:0.52
Consensus pattern (37 bp):
TTTTATAATATATACATATACGACACATTTTATAATT
Found at i:32524959 original size:27 final size:27
Alignment explanation
Indices: 32524929--32524989 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
32524919 ATGTATTTTT
32524929 TATTTTT-TTATAAT-TCACATACATATA
1 TATTTTTCTTAT-ATGT-ACATACATATA
*
32524956 TATTTTTCTTATATGTACATATATATA
1 TATTTTTCTTATATGTACATACATATA
32524983 TATTTTT
1 TATTTTT
32524990 ATATTTTATA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 26 0.84
28 5 0.16
ACGTcount: A:0.33, C:0.08, G:0.02, T:0.57
Consensus pattern (27 bp):
TATTTTTCTTATATGTACATACATATA
Found at i:32531637 original size:44 final size:44
Alignment explanation
Indices: 32531588--32531745 Score: 264
Period size: 44 Copynumber: 3.6 Consensus size: 44
32531578 AGTGGTTCTG
**
32531588 TCTCCCTGGAAAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTA
1 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTA
32531632 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCCTA
1 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCCTA
32531676 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTA
1 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTA
* *
32531720 TCTCCTTGGTCAGCAGCGGAATAGGT
1 TCTCCCTGGTCAGCAGTGGAATAGGT
32531746 GAATCCTATC
Statistics
Matches: 108, Mismatches: 4, Indels: 4
0.93 0.03 0.03
Matches are distributed among these distances:
43 2 0.02
44 104 0.96
45 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.28
Consensus pattern (44 bp):
TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTA
Found at i:32531836 original size:44 final size:44
Alignment explanation
Indices: 32531768--32531863 Score: 151
Period size: 44 Copynumber: 2.2 Consensus size: 44
32531758 CCTAATCAGC
32531768 AATAGGTTGAAGATTGTAAGTCCTATCTCCCTG-GTCAGCAGTGG
1 AATAGGTTGAAGATTGTAAGTCCTATCTCCCTGAG-CAGCAGTGG
32531812 AATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGAGCAGCAGTGG
1 AATAGGTTGAAGATTGT-AAGTCCTATCTCCCTGAGCAGCAGTGG
*
32531856 AGTAGGTT
1 AATAGGTT
32531864 AAAAATTACA
Statistics
Matches: 49, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
44 46 0.94
45 3 0.06
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (44 bp):
AATAGGTTGAAGATTGTAAGTCCTATCTCCCTGAGCAGCAGTGG
Found at i:32531851 original size:117 final size:117
Alignment explanation
Indices: 32531651--32531862 Score: 349
Period size: 117 Copynumber: 1.8 Consensus size: 117
32531641 TCAGCAGTGG
32531651 AATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT
1 AATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT
*
32531716 CCTATCTCCTTGGTCAGCAGCGGAATAGGTGAATCCTATCTCCCTAATCAGC
66 CCTATCTCCCTGGTCAGCAGCGGAATAGGTGAATCCTATCTCCCTAATCAGC
32531768 AATAGGTTGAAGATTGT-AAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA
1 AATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AA
* *
32531832 -TCCTATCTCCCTGAG-CAGCAGTGGAGTAGGT
64 GTCCTATCTCCCTG-GTCAGCAGCGGAATAGGT
32531863 TAAAAATTAC
Statistics
Matches: 89, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
116 2 0.02
117 84 0.94
118 3 0.03
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (117 bp):
AATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT
CCTATCTCCCTGGTCAGCAGCGGAATAGGTGAATCCTATCTCCCTAATCAGC
Found at i:32531883 original size:44 final size:44
Alignment explanation
Indices: 32531788--32531901 Score: 115
Period size: 44 Copynumber: 2.6 Consensus size: 44
32531778 AGATTGTAAG
* * * **
32531788 TCCTATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTGAA
1 TCCTATCTCCCTGAG-CAGCAGTGGAGTAGGTTAAAAATTCAGAA
32531832 TCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATTACAG-A
1 TCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATT-CAGAA
* * * *
32531876 TCTTATCTCCCTAAGTAGTAGTGGAG
1 TCCTATCTCCCTGAGCAGCAGTGGAG
32531902 CAGATCGAAG
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
44 57 0.97
45 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (44 bp):
TCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATTCAGAA
Found at i:32532103 original size:128 final size:129
Alignment explanation
Indices: 32531830--32532105 Score: 385
Period size: 128 Copynumber: 2.1 Consensus size: 129
32531820 GAAGATTGTG
* *
32531830 AATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATTACAGATCTTATCTCCCTAAGTAGT
1 AATCCTATCTCCCTGAGCAACAGTGGAGTAGG---AAAATTACAGATCTTATCTCCCTAAGCAGT
* * *
32531895 AGTGGAGCAGATCGAAGACGGCGAATCTTATCCTCCCAAGGTAGTAGGCAAGTAGATTTAAGCCA
63 AGTGGAGCAGATCGAAGACAGCGAATCTTATCCTCCCAAGGTAGTAGGCAAGCAAATTTAAGCCA
32531960 CT
128 CT
* * *
32531962 -AGCCTTATATCCCTGAGTAACAGTGGAGTAGG-AAATTACAGATCTTATCTCCCTAAGCAGTAG
1 AATCC-TATCTCCCTGAGCAACAGTGGAGTAGGAAAATTACAGATCTTATCTCCCTAAGCAGTAG
* * * * *
32532025 TGGAGCAGATCGAAGACAGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAAATTTTAGTCAGT
65 TGGAGCAGATCGAAGACAGCGAATCTTATCCTCCCAAGGTAGTAGGCAAGCAAATTTAAGCCACT
32532090 AATCCTATCTCCCTGA
1 AATCCTATCTCCCTGA
32532106 AGTTGTAGTG
Statistics
Matches: 127, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
128 97 0.76
129 3 0.02
131 3 0.02
132 24 0.19
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (129 bp):
AATCCTATCTCCCTGAGCAACAGTGGAGTAGGAAAATTACAGATCTTATCTCCCTAAGCAGTAGT
GGAGCAGATCGAAGACAGCGAATCTTATCCTCCCAAGGTAGTAGGCAAGCAAATTTAAGCCACT
Found at i:32532217 original size:50 final size:50
Alignment explanation
Indices: 32532163--32532430 Score: 250
Period size: 50 Copynumber: 5.4 Consensus size: 50
32532153 TTGGCATTAC
32532163 AGTGGAATAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGT
1 AGTGGAATAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGT
* * * * * * ** ** ** *
32532213 AGTGGAACAAATTGAAGCTACGATGGTGAATCTTGTTTCTCC-AACATTGC
1 AGTGGAATAGATTGAAGCCACAACGGCGAATCTTACTTC-CCTGGCGGTGT
**
32532263 AGTTAAATAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGT
1 AGTGGAATAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGT
* * ** ****** *
32532313 AGTGGAACAGATTGAAGCTACAACGGCGAATCTTGTTTCCCCAATATTGC
1 AGTGGAATAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGT
** *
32532363 AGTTAAATAGATTGAATCCACAACGGCGAATCTTACTTCCCTGGCGGTGT
1 AGTGGAATAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGT
*
32532413 AGTGGAATAGATTAAAGC
1 AGTGGAATAGATTGAAGC
32532431 TAAAGGTAGC
Statistics
Matches: 157, Mismatches: 59, Indels: 4
0.71 0.27 0.02
Matches are distributed among these distances:
49 2 0.01
50 153 0.97
51 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.26
Consensus pattern (50 bp):
AGTGGAATAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGT
Found at i:32532282 original size:100 final size:100
Alignment explanation
Indices: 32532168--32532454 Score: 441
Period size: 100 Copynumber: 2.9 Consensus size: 100
32532158 ATTACAGTGG
32532168 AATAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAAATTGAAGCTA
1 AATAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAAATTGAAGCTA
* * * *
32532233 CGATGGTGAATCTTGTTTCTCCAACATTGCAGTTA
66 CAACGGCGAATCTTGTTTCCCCAACATTGCAGTTA
*
32532268 AATAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTA
1 AATAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAAATTGAAGCTA
*
32532333 CAACGGCGAATCTTGTTTCCCCAATATTGCAGTTA
66 CAACGGCGAATCTTGTTTCCCCAACATTGCAGTTA
* * * *
32532368 AATAGATTGAATCCACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAATAGATTAAAGCTA
1 AATAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAAATTGAAGCTA
* *
32532433 -AAGGTAGCGTATCTTGTTTCCC
66 CAACG--GCGAATCTTGTTTCCC
32532455 TAGCGTTGCA
Statistics
Matches: 174, Mismatches: 11, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
99 3 0.02
100 156 0.90
101 15 0.09
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (100 bp):
AATAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAAATTGAAGCTA
CAACGGCGAATCTTGTTTCCCCAACATTGCAGTTA
Found at i:32533245 original size:19 final size:19
Alignment explanation
Indices: 32533221--32533274 Score: 108
Period size: 19 Copynumber: 2.8 Consensus size: 19
32533211 AATTTTCAAG
32533221 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
32533240 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
32533259 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
32533275 AGATATGATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 35 1.00
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:32533545 original size:23 final size:23
Alignment explanation
Indices: 32533501--32533545 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
32533491 TCTTATTTTG
* *
32533501 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
**
32533524 TTGATTTGTATATTGTTGATTT
1 TTGATTTGTATATAATTGATTT
32533546 CAAATCTCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:32533912 original size:38 final size:38
Alignment explanation
Indices: 32533835--32533912 Score: 88
Period size: 38 Copynumber: 2.0 Consensus size: 38
32533825 CATACATACG
*
32533835 TTTTATAATATATACATATACGTACACATTTTTTAATTT
1 TTTTATAATATATACATATACG-ACACATTTTATAATTT
* *
32533874 TTTTATAA-ATATATATATAC-ACATACTTTTATATATTT
1 TTTTATAATATATACATATACGACACA-TTTTATA-ATTT
32533912 T
1 T
32533913 CTATGTTTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
36 4 0.12
37 6 0.18
38 16 0.47
39 8 0.24
ACGTcount: A:0.37, C:0.09, G:0.01, T:0.53
Consensus pattern (38 bp):
TTTTATAATATATACATATACGACACATTTTATAATTT
Found at i:32538736 original size:24 final size:24
Alignment explanation
Indices: 32538691--32538736 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
32538681 ATTGCATTTG
* *
32538691 TATCTAAATCTGAATATGCATCCA
1 TATCTAAATCTGAAAATACATCCA
32538715 TATCTAAATCTGAAAATACATC
1 TATCTAAATCTGAAAATACATC
32538737 TGATTCTGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.33
Consensus pattern (24 bp):
TATCTAAATCTGAAAATACATCCA
Found at i:32542343 original size:30 final size:28
Alignment explanation
Indices: 32542303--32542373 Score: 72
Period size: 29 Copynumber: 2.5 Consensus size: 28
32542293 ACAAACTATT
*
32542303 TTTTAGTAATTTTTTAATAACTTTTATAGA
1 TTTTA-TAATTTTTTAATAAATTTT-TAGA
* * *
32542333 TTCTTTTAA-TTATTAATAAATTTTTATA
1 TT-TTATAATTTTTTAATAAATTTTTAGA
32542361 TTTTATAATTTTT
1 TTTTATAATTTTT
32542374 ATAGTTAGCT
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
27 5 0.15
28 8 0.24
29 13 0.39
30 5 0.15
31 2 0.06
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (28 bp):
TTTTATAATTTTTTAATAAATTTTTAGA
Found at i:32543543 original size:55 final size:55
Alignment explanation
Indices: 32543506--32543643 Score: 197
Period size: 55 Copynumber: 2.5 Consensus size: 55
32543496 AATCCATGTG
*
32543506 CATTTGCAAATGA-ATCATTTCTCATTTTCATTTTCATTTTGAGAAAATAACATT
1 CATTTCCAAATGATATCATTTCTCATTTTCATTTTCATTTTGAGAAAATAACATT
* * **
32543560 CATTTCCAAATGATTTGATTTCTCATTTTCATTTTCATTTTGAGAAAACCACATT
1 CATTTCCAAATGATATCATTTCTCATTTTCATTTTCATTTTGAGAAAATAACATT
* *
32543615 CATTTTCAAATGATTTCATTTCTCCATTT
1 CATTTCCAAATGATATCATTTCT-CATTT
32543644 CGGAGTAAAC
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
54 12 0.16
55 58 0.77
56 5 0.07
ACGTcount: A:0.30, C:0.17, G:0.07, T:0.46
Consensus pattern (55 bp):
CATTTCCAAATGATATCATTTCTCATTTTCATTTTCATTTTGAGAAAATAACATT
Found at i:32545388 original size:23 final size:24
Alignment explanation
Indices: 32545353--32545421 Score: 77
Period size: 23 Copynumber: 2.9 Consensus size: 24
32545343 TTACTACAAA
32545353 ATTGAGTGGCTTGTCCACAACGAT
1 ATTGAGTGGCTTGTCCACAACGAT
* * *
32545377 ATTG-GTGTCTTGTCCTCAACGCT
1 ATTGAGTGGCTTGTCCACAACGAT
** *
32545400 AACGAGTGGCTTGACCACAACG
1 ATTGAGTGGCTTGTCCACAACG
32545422 TAAATGAGTG
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
23 18 0.50
24 18 0.50
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.28
Consensus pattern (24 bp):
ATTGAGTGGCTTGTCCACAACGAT
Found at i:32545430 original size:24 final size:24
Alignment explanation
Indices: 32545355--32545442 Score: 74
Period size: 24 Copynumber: 3.7 Consensus size: 24
32545345 ACTACAAAAT
* *
32545355 TGAGTGGCTTGTCCACAACG-ATAT
1 TGAGTGGCTTGACCACAACGTA-AA
* * *
32545379 TG-GTGTCTTGTCCTCAACGCT-AA
1 TGAGTGGCTTGACCACAACG-TAAA
*
32545402 CGAGTGGCTTGACCACAACGTAAA
1 TGAGTGGCTTGACCACAACGTAAA
*
32545426 TGAGTGGTTTGACCACA
1 TGAGTGGCTTGACCACA
32545443 CAGTGCAACT
Statistics
Matches: 51, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
23 18 0.35
24 33 0.65
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (24 bp):
TGAGTGGCTTGACCACAACGTAAA
Done.