Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53248092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1300000 characters in sequence are not A, C, G, or T
File 103 of 175
Found at i:32892629 original size:44 final size:43
Alignment explanation
Indices: 32892568--32892678 Score: 123
Period size: 44 Copynumber: 2.5 Consensus size: 43
32892558 GATCTGCTCT
* * *
32892568 CTGCAACTTTAGAGAGATAAGATATGTGGTTTTAATCCAATCCA
1 CTGCAACTTTAGGGAGATAAGATAT-TGGCTTTAATACAATCCA
* * * ***
32892612 CTTCAACTTCAGGGAGATAGGATTATTGGCTTTAATATGCTCCA
1 CTGCAACTTTAGGGAGATAAGA-TATTGGCTTTAATACAATCCA
32892656 CTGCAACTTTAGGGAGATAAGAT
1 CTGCAACTTTAGGGAGATAAGAT
32892679 TCGCCCTATT
Statistics
Matches: 54, Mismatches: 12, Indels: 3
0.78 0.17 0.04
Matches are distributed among these distances:
43 1 0.02
44 50 0.93
45 3 0.06
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.32
Consensus pattern (43 bp):
CTGCAACTTTAGGGAGATAAGATATTGGCTTTAATACAATCCA
Found at i:32905072 original size:26 final size:24
Alignment explanation
Indices: 32905039--32905087 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
32905029 CAATGATATA
32905039 GAAATAATATAAATAATAAATAAAC
1 GAAATAATATAAATAAT-AATAAAC
*
32905064 GAAATTAATATAAGTAATAATAAA
1 GAAA-TAATATAAATAATAATAAA
32905088 AATAATGACA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (24 bp):
GAAATAATATAAATAATAATAAAC
Found at i:32905213 original size:10 final size:10
Alignment explanation
Indices: 32905198--32905229 Score: 55
Period size: 10 Copynumber: 3.1 Consensus size: 10
32905188 AACTTATAAA
32905198 AAATAAAAAT
1 AAATAAAAAT
32905208 AAATAAAAAT
1 AAATAAAAAT
32905218 AAATAAAGAAT
1 AAATAAA-AAT
32905229 A
1 A
32905230 TAAGGCGTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 17 0.81
11 4 0.19
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (10 bp):
AAATAAAAAT
Found at i:32905287 original size:27 final size:26
Alignment explanation
Indices: 32905257--32905311 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
32905247 ATATACATTG
32905257 AAATTATGAAAAAATA-AAAAAAATTAT
1 AAATTAT-AAAAAATATAAAAAAA-TAT
**
32905284 AAATTATAAAATTTATAAAAAAATAT
1 AAATTATAAAAAATATAAAAAAATAT
32905310 AA
1 AA
32905312 TACATTTATG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 11 0.44
27 14 0.56
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (26 bp):
AAATTATAAAAAATATAAAAAAATAT
Found at i:32905365 original size:20 final size:20
Alignment explanation
Indices: 32905337--32905383 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
32905327 AAAGAAAAAT
*
32905337 ATATATATAGAAATTATAAA
1 ATATATATAGAAAATATAAA
* *
32905357 ATATGTATAGAAAATATAAT
1 ATATATATAGAAAATATAAA
32905377 ATATATA
1 ATATATA
32905384 CGTTTATATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.36
Consensus pattern (20 bp):
ATATATATAGAAAATATAAA
Found at i:32917300 original size:20 final size:21
Alignment explanation
Indices: 32917277--32917315 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
32917267 TACAAGAAAA
*
32917277 TAAAAATA-AAACAAAACAAC
1 TAAAAATAGAAAAAAAACAAC
32917297 TAAAAATAGAAAAAAAACA
1 TAAAAATAGAAAAAAAACA
32917316 TAAAATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.77, C:0.10, G:0.03, T:0.10
Consensus pattern (21 bp):
TAAAAATAGAAAAAAAACAAC
Found at i:32917325 original size:5 final size:5
Alignment explanation
Indices: 32917315--32917360 Score: 65
Period size: 5 Copynumber: 9.0 Consensus size: 5
32917305 GAAAAAAAAC
* *
32917315 ATAAA ATAAA ATAAA ATAAA ATAAA AAAGAA AGAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATA-AA ATAAA ATAAA ATAAA
32917361 TTATCATCAT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
5 33 0.89
6 4 0.11
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.15
Consensus pattern (5 bp):
ATAAA
Found at i:32919116 original size:26 final size:24
Alignment explanation
Indices: 32919071--32919148 Score: 68
Period size: 26 Copynumber: 3.0 Consensus size: 24
32919061 AAGTAGAATT
32919071 AGAAAAATAAAATAATATAACTAATA
1 AGAAAAAT--AATAATATAACTAATA
**
32919097 AGAAAAATAATAGATGATAAAAAATA
1 AGAAAAATAATA-AT-ATAACTAATA
*
32919123 A-ATAAATAATATAATATAACTAATA
1 AGAAAAAT-A-ATAATATAACTAATA
32919148 A
1 A
32919149 TAATAGATAA
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
24 4 0.09
25 16 0.37
26 20 0.47
27 3 0.07
ACGTcount: A:0.68, C:0.03, G:0.05, T:0.24
Consensus pattern (24 bp):
AGAAAAATAATAATATAACTAATA
Found at i:32919138 original size:42 final size:43
Alignment explanation
Indices: 32919073--32919178 Score: 110
Period size: 45 Copynumber: 2.4 Consensus size: 43
32919063 GTAGAATTAG
* * *
32919073 AAAAATAAAATAATATAACTAATA-AGA-AA-AATAATAGATGATA
1 AAAAAT-AAATAA-ATAAATAATATA-ACAATAATAATAGATAAGA
32919116 AAAAATAAATAAATAATATAATATAACTAATAATAATAGATAAGA
1 AAAAATAAATAAATAA-ATAATATAAC-AATAATAATAGATAAGA
32919161 AACAAATAAATAAATAAA
1 AA-AAATAAATAAATAAA
32919179 ATAGGGCAAA
Statistics
Matches: 54, Mismatches: 3, Indels: 10
0.81 0.04 0.15
Matches are distributed among these distances:
41 4 0.07
42 12 0.22
43 7 0.13
44 2 0.04
45 15 0.28
46 14 0.26
ACGTcount: A:0.69, C:0.03, G:0.05, T:0.24
Consensus pattern (43 bp):
AAAAATAAATAAATAAATAATATAACAATAATAATAGATAAGA
Found at i:32919168 original size:46 final size:46
Alignment explanation
Indices: 32919075--32919177 Score: 129
Period size: 46 Copynumber: 2.2 Consensus size: 46
32919065 AGAATTAGAA
* *
32919075 AAATAAAATAATATAACTAATAAGAAAAATAATAGATGATAAAAAAT
1 AAAT-AAATAATATAACTAATAAGAAAAATAATAGATAAGAAAAAAT
* *
32919122 AAATAAATAATATAA-T-ATAACTAATAATAATAGATAAGAAACAAAT
1 AAATAAATAATATAACTAATAA-GAAAAATAATAGATAAGAAA-AAAT
32919168 AAATAAATAA
1 AAATAAATAA
32919178 AATAGGGCAA
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
44 4 0.08
45 17 0.34
46 25 0.50
47 4 0.08
ACGTcount: A:0.68, C:0.03, G:0.05, T:0.24
Consensus pattern (46 bp):
AAATAAATAATATAACTAATAAGAAAAATAATAGATAAGAAAAAAT
Found at i:32919181 original size:51 final size:52
Alignment explanation
Indices: 32919074--32919181 Score: 125
Period size: 51 Copynumber: 2.1 Consensus size: 52
32919064 TAGAATTAGA
* *
32919074 AAAATAAAATAATATAACTAATAAGAAAAATAATAGATGATAAAAAATAAAT
1 AAAATAAAATAATATAACTAATAAGAAAAATAATAGATAACAAAAAATAAAT
* * *
32919126 -AAATAATATAATATAACTAATAATAATAGAT-A-AGA-AACAAATAAATAAAT
1 AAAATAAAATAATATAACTAATAAGAA-AAATAATAGATAACAAA-AAATAAAT
32919176 AAAATA
1 AAAATA
32919182 GGGCAAACAT
Statistics
Matches: 48, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
49 4 0.08
50 11 0.23
51 30 0.62
52 3 0.06
ACGTcount: A:0.69, C:0.03, G:0.05, T:0.24
Consensus pattern (52 bp):
AAAATAAAATAATATAACTAATAAGAAAAATAATAGATAACAAAAAATAAAT
Found at i:32929077 original size:40 final size:40
Alignment explanation
Indices: 32929033--32929127 Score: 136
Period size: 40 Copynumber: 2.4 Consensus size: 40
32929023 TTTGAATTCT
*
32929033 TGAAAAGGTTGAAAAGGGTATATCCGAAATAGATATCAAA
1 TGAAAAGGTTGAAAAGGATATATCCGAAATAGATATCAAA
* * *
32929073 TGAAAATGTTGAAAAGGATATATCCGAAATGGATATCCAA
1 TGAAAAGGTTGAAAAGGATATATCCGAAATAGATATCAAA
* *
32929113 TTAAAAGGTTAAAAA
1 TGAAAAGGTTGAAAA
32929128 AGGTTGTTAC
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.48, C:0.07, G:0.20, T:0.24
Consensus pattern (40 bp):
TGAAAAGGTTGAAAAGGATATATCCGAAATAGATATCAAA
Found at i:32937229 original size:24 final size:25
Alignment explanation
Indices: 32937201--32937255 Score: 78
Period size: 23 Copynumber: 2.3 Consensus size: 25
32937191 GGGCTTATAG
*
32937201 TTTTTAGGTTAGGTTTTCTTTTCT-
1 TTTTTAGGTTAAGTTTTCTTTTCTC
*
32937225 TTTTTA-GTTAAGTTTTCTTTTTTC
1 TTTTTAGGTTAAGTTTTCTTTTCTC
32937249 TTTTTAG
1 TTTTTAG
32937256 AGTAGATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
23 15 0.56
24 12 0.44
ACGTcount: A:0.11, C:0.07, G:0.13, T:0.69
Consensus pattern (25 bp):
TTTTTAGGTTAAGTTTTCTTTTCTC
Found at i:32941672 original size:25 final size:25
Alignment explanation
Indices: 32941548--32941673 Score: 126
Period size: 25 Copynumber: 5.0 Consensus size: 25
32941538 TAGTTAAGTT
* * *
32941548 CTGACTCACAGCTCGTAAGAGCATA
1 CTGATTCACAGATCGTGAGAGCATA
* * *
32941573 CCGATTCACAGTTCGCGAGAGCATA
1 CTGATTCACAGATCGTGAGAGCATA
* * *
32941598 TTGATTTACAGATCATGAGAGCATA
1 CTGATTCACAGATCGTGAGAGCATA
* * *
32941623 CTGATTTACAGCTCGTAAGAGCATA
1 CTGATTCACAGATCGTGAGAGCATA
* *
32941648 CTGATTCACAGATCGTGTGACCATA
1 CTGATTCACAGATCGTGAGAGCATA
32941673 C
1 C
32941674 ATGTAGAAGA
Statistics
Matches: 81, Mismatches: 20, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 81 1.00
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (25 bp):
CTGATTCACAGATCGTGAGAGCATA
Found at i:32955830 original size:16 final size:15
Alignment explanation
Indices: 32955803--32955836 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
32955793 ATAGCTAGTA
*
32955803 TATAATTATATTTAT
1 TATAATTATATTAAT
32955818 TATAATATATATTAAT
1 TATAAT-TATATTAAT
32955834 TAT
1 TAT
32955837 TATCAACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATAATTATATTAAT
Found at i:32956171 original size:19 final size:19
Alignment explanation
Indices: 32956147--32956184 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
32956137 ACCCTCACAT
32956147 GCACCTTGCGACTTTCCCC
1 GCACCTTGCGACTTTCCCC
32956166 GCACCTTGCGACTTTCCCC
1 GCACCTTGCGACTTTCCCC
32956185 ATCGCGCTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.11, C:0.47, G:0.16, T:0.26
Consensus pattern (19 bp):
GCACCTTGCGACTTTCCCC
Found at i:32964953 original size:27 final size:27
Alignment explanation
Indices: 32964920--32965123 Score: 178
Period size: 27 Copynumber: 7.5 Consensus size: 27
32964910 AAACTGTACA
*
32964920 GCACTAAGTGTGCGATATGACTATGTT
1 GCACTAAGTGTGCGATATGAATATGTT
* * *
32964947 GCACTAAGTGTGCGAAATGAATACGAT
1 GCACTAAGTGTGCGATATGAATATGTT
* * *
32964974 GCACTAAGTGTGCGAAATGAATACGAT
1 GCACTAAGTGTGCGATATGAATATGTT
* **
32965001 GCACTAAGTGTGCGAAATG-ATCATGCG
1 GCACTAAGTGTGCGATATGAAT-ATGTT
* * *
32965028 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGA-TATGAATATGTT
* * * *
32965056 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGATATGAATATGTT
* * *
32965083 GCACTAAGTGTGCGAGT-TGATTATATA
1 GCACTAAGTGTGCGA-TATGAATATGTT
*
32965110 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
32965124 GGCTCAATAT
Statistics
Matches: 154, Mismatches: 19, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
26 2 0.01
27 130 0.84
28 21 0.14
29 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGATATGAATATGTT
Found at i:32964980 original size:54 final size:54
Alignment explanation
Indices: 32964920--32965123 Score: 220
Period size: 54 Copynumber: 3.8 Consensus size: 54
32964910 AAACTGTACA
*
32964920 GCACTAAGTGTGCGA-TATGACTATGTTGCACTAAGTGTGCGAAATGAATACGAT
1 GCACTAAGTGTGCGAGTATGACTATGTAGCACTAAGTGTGCGAAATGAATACG-T
* * * *
32964974 GCACTAAGTGTGCGA-AATGAATACG-ATGCACTAAGTGTGCGAAATGATCATGCG-
1 GCACTAAGTGTGCGAGTATGACTATGTA-GCACTAAGTGTGCGAAATGA--ATACGT
* ** *
32965028 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGT
1 GCACTAAGTGTGCGAGTATGACTATGTAGCACTAAGTGTGCGAAATGAATACGT
* * *
32965082 GGCACTAAGTGTGCGAGT-TGATTATATAGCACTGAGTGTGCG
1 -GCACTAAGTGTGCGAGTATGACTATGTAGCACTAAGTGTGCG
32965124 GGCTCAATAT
Statistics
Matches: 127, Mismatches: 16, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
53 3 0.02
54 78 0.61
55 41 0.32
56 5 0.04
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (54 bp):
GCACTAAGTGTGCGAGTATGACTATGTAGCACTAAGTGTGCGAAATGAATACGT
Found at i:32970031 original size:8 final size:8
Alignment explanation
Indices: 32970018--32970043 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
32970008 AAATAATCTT
32970018 AATTCATC
1 AATTCATC
32970026 AATTCATC
1 AATTCATC
32970034 AATTCATC
1 AATTCATC
32970042 AA
1 AA
32970044 ACAAATCATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (8 bp):
AATTCATC
Found at i:32971014 original size:12 final size:12
Alignment explanation
Indices: 32970997--32971027 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
32970987 CCGAGCCGTC
*
32970997 AATATTTTTATG
1 AATATTTTTATA
32971009 AATATTTTTATA
1 AATATTTTTATA
32971021 AATATTT
1 AATATTT
32971028 ATGGATTCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (12 bp):
AATATTTTTATA
Found at i:32972062 original size:20 final size:19
Alignment explanation
Indices: 32972015--32972063 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
32972005 TTTATTGAAA
*
32972015 ATGAATCAATATATATGTT
1 ATGAAACAATATATATGTT
* * *
32972034 ATTATACAATTTATCATGTT
1 ATGAAACAATATAT-ATGTT
32972054 ATGAAACAAT
1 ATGAAACAAT
32972064 GTAAATCCAA
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.41
Consensus pattern (19 bp):
ATGAAACAATATATATGTT
Found at i:32973003 original size:20 final size:20
Alignment explanation
Indices: 32972980--32973023 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
32972970 TAAAGAAAGT
32972980 AAATGC-AATGGAAAGTAACA
1 AAATGCAAAT-GAAAGTAACA
*
32973000 AAATGCAAATGAAAGTAAGA
1 AAATGCAAATGAAAGTAACA
32973020 AAAT
1 AAAT
32973024 TTGGAAAGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 19 0.86
21 3 0.14
ACGTcount: A:0.59, C:0.07, G:0.18, T:0.16
Consensus pattern (20 bp):
AAATGCAAATGAAAGTAACA
Found at i:32975288 original size:22 final size:22
Alignment explanation
Indices: 32975256--32975308 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
32975246 GTTTTAACAA
32975256 TAGGCACCAAAGTGTAG-AGTAG
1 TAGGCACCAAAGTG-AGAAGTAG
* *
32975278 TAGGCATCAAAGTGAGAATTAG
1 TAGGCACCAAAGTGAGAAGTAG
32975300 TAGGCACCA
1 TAGGCACCA
32975309 TAGTACAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 2 0.07
22 25 0.93
ACGTcount: A:0.38, C:0.15, G:0.28, T:0.19
Consensus pattern (22 bp):
TAGGCACCAAAGTGAGAAGTAG
Found at i:32981597 original size:24 final size:25
Alignment explanation
Indices: 32981551--32981603 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 25
32981541 GAAAGCTCGT
*
32981551 GAGAGCCATATATCAGGAAGCTCAA
1 GAGAGCCATACATCAGGAAGCTCAA
* * *
32981576 GAGAGCCA-ACATTAGGATGCTCAG
1 GAGAGCCATACATCAGGAAGCTCAA
32981600 GAGA
1 GAGA
32981604 TCTAATAACG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 16 0.67
25 8 0.33
ACGTcount: A:0.38, C:0.19, G:0.28, T:0.15
Consensus pattern (25 bp):
GAGAGCCATACATCAGGAAGCTCAA
Found at i:32985223 original size:104 final size:104
Alignment explanation
Indices: 32985055--32985413 Score: 569
Period size: 104 Copynumber: 3.5 Consensus size: 104
32985045 GTGGATCCCA
*
32985055 CACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGAATCAGCACATA
1 CACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGAATCAGCACATA
*
32985120 GCAACCCCCTTTTTCATTTCAAAGATACGGTGGATATCG
66 GCAACCCCCTTTTTCATTTCAAAGATATGGTGGATATCG
* *
32985159 CACTTAGCATCACCAATGAATCGGGGAATCATCACTTAGCAACCCCTCGGGGGAATCAGCACATA
1 CACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGAATCAGCACATA
32985224 GCAACCCCC-TTTTCATTTCAAAGATATGGTGGATATCG
66 GCAACCCCCTTTTTCATTTCAAAGATATGGTGGATATCG
32985262 CACTTAGCACCACCAATGAAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGAATCAGCACAT
1 CACTTAGCACCACCAATG-AATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGAATCAGCACAT
** * *
32985327 AGCAACCCCCTTTCACATTTGAAATATATGGTGGATCA-CG
65 AGCAACCCCCTTTTTCATTTCAAAGATATGGTGGAT-ATCG
* * * **
32985367 CACATAGTACCACCAATGAATTGGGGAATCAGCACACAGCAACCCCT
1 CACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
32985414 TTTATATACA
Statistics
Matches: 237, Mismatches: 15, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
103 45 0.19
104 152 0.64
105 39 0.16
106 1 0.00
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (104 bp):
CACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGAATCAGCACATA
GCAACCCCCTTTTTCATTTCAAAGATATGGTGGATATCG
Found at i:32985776 original size:30 final size:29
Alignment explanation
Indices: 32985742--32985806 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
32985732 TAATCCACCA
32985742 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
32985772 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
32985802 CCCAA
1 CCCAA
32985807 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:32985780 original size:31 final size:30
Alignment explanation
Indices: 32985749--32985806 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
32985739 CCACCCAACT
32985749 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
32985779 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
32985807 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:32987733 original size:14 final size:14
Alignment explanation
Indices: 32987714--32987740 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32987704 CATTTCTCGG
32987714 TCGGTTCAGTTCAC
1 TCGGTTCAGTTCAC
32987728 TCGGTTCAGTTCA
1 TCGGTTCAGTTCA
32987741 ACTGGACCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.26, G:0.22, T:0.37
Consensus pattern (14 bp):
TCGGTTCAGTTCAC
Found at i:32989090 original size:19 final size:19
Alignment explanation
Indices: 32989068--32989129 Score: 63
Period size: 19 Copynumber: 3.2 Consensus size: 19
32989058 ATTTTTGAAT
*
32989068 TATTGAATGATTTTAGCTC
1 TATTGAATGATTTTCGCTC
* * *
32989087 TATTTGCAT-CTGTTTCGCTT
1 TA-TTGAATGAT-TTTCGCTC
32989107 TATTGAATGATTTTCGCTC
1 TATTGAATGATTTTCGCTC
32989126 TATT
1 TATT
32989130 TTCCTTCTCA
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
19 19 0.58
20 14 0.42
ACGTcount: A:0.19, C:0.15, G:0.15, T:0.52
Consensus pattern (19 bp):
TATTGAATGATTTTCGCTC
Found at i:32989547 original size:17 final size:17
Alignment explanation
Indices: 32989525--32989576 Score: 77
Period size: 17 Copynumber: 3.1 Consensus size: 17
32989515 AATTTCCCAA
*
32989525 AGTAATAATGCAATATT
1 AGTAATAATGTAATATT
*
32989542 AGTAATAATATAATATT
1 AGTAATAATGTAATATT
*
32989559 AGTAATAACGTAATATT
1 AGTAATAATGTAATATT
32989576 A
1 A
32989577 ATAGAGAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.50, C:0.04, G:0.10, T:0.37
Consensus pattern (17 bp):
AGTAATAATGTAATATT
Found at i:32989705 original size:12 final size:13
Alignment explanation
Indices: 32989687--32989725 Score: 53
Period size: 12 Copynumber: 3.0 Consensus size: 13
32989677 TTATCATATT
32989687 TAAATTTTAAATA
1 TAAATTTTAAATA
32989700 -AAATTTTAAATA
1 TAAATTTTAAATA
*
32989712 TTAAATATTAAATA
1 -TAAATTTTAAATA
32989726 CAAGACCTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 12 0.52
14 11 0.48
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
TAAATTTTAAATA
Found at i:32990229 original size:187 final size:184
Alignment explanation
Indices: 32989897--32990282 Score: 602
Period size: 187 Copynumber: 2.1 Consensus size: 184
32989887 TATGTTGTTG
* * *
32989897 TACTATTATATTAATTTAGGCTTCAATTAACTAACTTTGAAGTTTAAACTATGTTTTAACAGACA
1 TACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAAGTTTAAACGATGTCTTAACAGACA
*
32989962 TTTTTTTTGTTTAATTTATGCTATTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTA
66 TTTTTTCTGTTTAATTTATGCTATTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTA
* * * *
32990027 AATTTTAACTGTAGTTTAACATACTTTTTTTTGGTTTAATTTATGTTGTTGTACT-T
131 AATTTAAAATGTAGTTTAACATAC--TTTTTT-GTTTAATTTATGCTGCTGTACTAT
*
32990083 ATACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAATTTTAAACGATAG-CTTAACAGA
1 -TACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAAGTTTAAACGAT-GTCTTAACAGA
32990147 C-TTTTTTCTGTTTAATTTATGCTATTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTT
64 CATTTTTTCTGTTTAATTTATGCTATTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTT
32990211 TAAAGTTTAAAATGTAGTTTAACATACTTTTTTGTTTAATTTATGCTGCTGTACTAT
129 TAAA-TTTAAAATGTAGTTTAACATACTTTTTTGTTTAATTTATGCTGCTGTACTAT
32990268 TA-TATTA-ATTAATTT
1 TACTATTATATTAATTT
32990283 TTAATTTACT
Statistics
Matches: 187, Mismatches: 9, Indels: 11
0.90 0.04 0.05
Matches are distributed among these distances:
182 8 0.04
183 5 0.03
184 22 0.12
185 7 0.04
186 66 0.35
187 78 0.42
188 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.09, T:0.49
Consensus pattern (184 bp):
TACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAAGTTTAAACGATGTCTTAACAGACA
TTTTTTCTGTTTAATTTATGCTATTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTA
AATTTAAAATGTAGTTTAACATACTTTTTTGTTTAATTTATGCTGCTGTACTAT
Found at i:32990233 original size:90 final size:89
Alignment explanation
Indices: 32989881--32990277 Score: 514
Period size: 90 Copynumber: 4.4 Consensus size: 89
32989871 CTTCAATTAC
* * *
32989881 TTAATTTATGTTGTTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTGAAGTTTAAAC
1 TTAATTTATGCTATTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTT-AAATTTAAA-
32989946 TATGT--TTTAACAGACATTTTTTTTGT
64 -ATGTAGTTTAACAGAC-TTTTTTTTGT
* *
32989972 TTAATTTATGCTATTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAATTTTAACT
1 TTAATTTATGCTATTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAATTTAAAAT
*
32990037 GTAGTTTAACATACTTTTTTTTGGT
66 GTAGTTTAACAGACTTTTTTTT-GT
* *
32990062 TTAATTTATGTTGTTGTACTTATACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAATT
1 TTAATTTA---TG--CTA-TTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAATT
* * * *
32990127 TTAAACGATAGCTTAACAGACTTTTTTCTGT
60 TAAAATG-TAGTTTAACAGACTTTTTTTTGT
32990158 TTAATTTATGCTATTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAAGTTTAAAA
1 TTAATTTATGCTATTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAA-TTTAAAA
*
32990223 TGTAGTTTAACATAC--TTTTTTGT
65 TGTAGTTTAACAGACTTTTTTTTGT
**
32990246 TTAATTTATGCTGCTGTACTATTATATTAATT
1 TTAATTTATGCTATTGTACTATTATATTAATT
32990278 AATTTTTAAT
Statistics
Matches: 273, Mismatches: 22, Indels: 25
0.85 0.07 0.08
Matches are distributed among these distances:
88 40 0.15
89 8 0.03
90 80 0.29
91 61 0.22
93 4 0.01
95 2 0.01
96 60 0.22
97 18 0.07
ACGTcount: A:0.31, C:0.10, G:0.10, T:0.50
Consensus pattern (89 bp):
TTAATTTATGCTATTGTACTATTATATTAATTTAGGCTTCAATTAACTAACTTTAAATTTAAAAT
GTAGTTTAACAGACTTTTTTTTGT
Found at i:33009411 original size:14 final size:15
Alignment explanation
Indices: 33009387--33009415 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
33009377 ATGAAATTTC
33009387 ATGACTTGGTTTTGT
1 ATGACTTGGTTTTGT
33009402 ATGA-TTGGTTTTGT
1 ATGACTTGGTTTTGT
33009416 TTAAGTCTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.14, C:0.03, G:0.28, T:0.55
Consensus pattern (15 bp):
ATGACTTGGTTTTGT
Found at i:33010671 original size:22 final size:22
Alignment explanation
Indices: 33010594--33010660 Score: 89
Period size: 22 Copynumber: 3.0 Consensus size: 22
33010584 GCTTGTATGG
* * *
33010594 GTTCAACATTTCTATGCTCTCT
1 GTTCAACACTTCGATGCTCTTT
**
33010616 ACTCAACACTTCGATGCTCTTT
1 GTTCAACACTTCGATGCTCTTT
33010638 GTTCAACACTTCGATGCTCTTT
1 GTTCAACACTTCGATGCTCTTT
33010660 G
1 G
33010661 ATTATCACTT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.19, C:0.28, G:0.12, T:0.40
Consensus pattern (22 bp):
GTTCAACACTTCGATGCTCTTT
Found at i:33010691 original size:22 final size:22
Alignment explanation
Indices: 33010666--33010725 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
33010656 CTTTGATTAT
* *
33010666 CACTTCAGTGGTCTCTGCTTAG
1 CACTTCAGTGCTCTCTACTTAG
*
33010688 CACTTCAGTGCTCTCTACTTAT
1 CACTTCAGTGCTCTCTACTTAG
* *
33010710 CACTACAATGCTCTCT
1 CACTTCAGTGCTCTCT
33010726 GGTGTGGTGT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.18, C:0.32, G:0.13, T:0.37
Consensus pattern (22 bp):
CACTTCAGTGCTCTCTACTTAG
Found at i:33011448 original size:20 final size:20
Alignment explanation
Indices: 33011419--33011469 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
33011409 TTAACCAAAG
* *
33011419 GTATCAATACTAGACTTGGA
1 GTATCGATACTAGACTTAGA
33011439 GTATCGATACTAGACTTAGA
1 GTATCGATACTAGACTTAGA
33011459 GTATCGATACT
1 GTATCGATACT
33011470 TTCTTCAACG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (20 bp):
GTATCGATACTAGACTTAGA
Found at i:33012687 original size:15 final size:15
Alignment explanation
Indices: 33012667--33012697 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
33012657 TAATATCAAT
33012667 TGTTTCAAACACCAC
1 TGTTTCAAACACCAC
*
33012682 TGTTTCCAACACCAC
1 TGTTTCAAACACCAC
33012697 T
1 T
33012698 AACTTTAGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.35, G:0.06, T:0.29
Consensus pattern (15 bp):
TGTTTCAAACACCAC
Found at i:33016458 original size:25 final size:26
Alignment explanation
Indices: 33016388--33016459 Score: 110
Period size: 26 Copynumber: 2.8 Consensus size: 26
33016378 TATTTCCTTG
*
33016388 AAATTTTACTAGGGGCAAAATCGTCA
1 AAATTTTACTAGGGGTAAAATCGTCA
*
33016414 AAATTTTACCAGGGGTAAAATCGTCA
1 AAATTTTACTAGGGGTAAAATCGTCA
*
33016440 AAATTTT-TTAGGGGTAAAAT
1 AAATTTTACTAGGGGTAAAAT
33016460 AGGGATGAGA
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
25 11 0.26
26 31 0.74
ACGTcount: A:0.39, C:0.11, G:0.19, T:0.31
Consensus pattern (26 bp):
AAATTTTACTAGGGGTAAAATCGTCA
Found at i:33016859 original size:38 final size:38
Alignment explanation
Indices: 33016807--33016883 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
33016797 TTTGAGAGAT
*
33016807 TGTTTTCTGCCAAAAAATAGAGAGAATTTATTCTCAAC
1 TGTTTTCTGACAAAAAATAGAGAGAATTTATTCTCAAC
33016845 TGTTTTCTGACAAAAAATAGAGAGAATTTATTCTCAAC
1 TGTTTTCTGACAAAAAATAGAGAGAATTTATTCTCAAC
33016883 T
1 T
33016884 ATTACATATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.35
Consensus pattern (38 bp):
TGTTTTCTGACAAAAAATAGAGAGAATTTATTCTCAAC
Found at i:33017807 original size:15 final size:15
Alignment explanation
Indices: 33017787--33017816 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
33017777 GAAAATACAT
*
33017787 GTGTGGTAATGAGAA
1 GTGTGGTAATAAGAA
33017802 GTGTGGTAATAAGAA
1 GTGTGGTAATAAGAA
33017817 CGTGCATGTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.37, T:0.27
Consensus pattern (15 bp):
GTGTGGTAATAAGAA
Found at i:33020256 original size:49 final size:48
Alignment explanation
Indices: 33020184--33020309 Score: 139
Period size: 48 Copynumber: 2.6 Consensus size: 48
33020174 CTCCAAGTTC
* * * * * *
33020184 ACAGTAGTTATACAATCACGGGTTGAAGTAT-GACTAGGGCTCTCAATTG
1 ACAGTGGTTATGCAGTCATGGGTTCAAGTATAG-CTAGAGC-CTCAATTG
*
33020233 ACAGTGGTTATGCAGTCATGGGTTCAAGTATAGCTCGAGCCTCAATTG
1 ACAGTGGTTATGCAGTCATGGGTTCAAGTATAGCTAGAGCCTCAATTG
*
33020281 ACGGTGGTTATGC-GATCATGGGTTCAAGT
1 ACAGTGGTTATGCAG-TCATGGGTTCAAGT
33020310 TTAATGCCAC
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
47 1 0.01
48 34 0.51
49 31 0.46
50 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (48 bp):
ACAGTGGTTATGCAGTCATGGGTTCAAGTATAGCTAGAGCCTCAATTG
Found at i:33020911 original size:49 final size:49
Alignment explanation
Indices: 33020835--33020935 Score: 148
Period size: 49 Copynumber: 2.1 Consensus size: 49
33020825 AAGAAACATG
**
33020835 AACCTGTGACCGCATAACCACTATCAACTAGGCTCTCGAGTTATACTCC
1 AACCTGTGACCGCATAACCACTATCAACTAGGAGCTCGAGTTATACTCC
* * * *
33020884 AACCTGTGATCGCATAACCACTGTCAACTAGGAGCTCTAGTTATACTTC
1 AACCTGTGACCGCATAACCACTATCAACTAGGAGCTCGAGTTATACTCC
33020933 AAC
1 AAC
33020936 TCATTACTGT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.26
Consensus pattern (49 bp):
AACCTGTGACCGCATAACCACTATCAACTAGGAGCTCGAGTTATACTCC
Found at i:33023087 original size:28 final size:28
Alignment explanation
Indices: 33023055--33023111 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
33023045 CTTTCGTAAT
*
33023055 TAAAATATGTTATGTTATTTGAGGGTAC
1 TAAAATATGTTATATTATTTGAGGGTAC
*
33023083 TAAAATATGTTATATTATTTGAGGTTAC
1 TAAAATATGTTATATTATTTGAGGGTAC
33023111 T
1 T
33023112 TTAGTCTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.33, C:0.04, G:0.18, T:0.46
Consensus pattern (28 bp):
TAAAATATGTTATATTATTTGAGGGTAC
Found at i:33030355 original size:12 final size:13
Alignment explanation
Indices: 33030338--33030374 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
33030328 CAAAAGACCA
33030338 TCATCATCTTC-T
1 TCATCATCTTCAT
*
33030350 TCATCACCTTCAT
1 TCATCATCTTCAT
33030363 T-ATCATCTTCAT
1 TCATCATCTTCAT
33030375 CAAAAAACCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 20 0.91
13 2 0.09
ACGTcount: A:0.22, C:0.32, G:0.00, T:0.46
Consensus pattern (13 bp):
TCATCATCTTCAT
Found at i:33032132 original size:16 final size:17
Alignment explanation
Indices: 33032106--33032137 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
33032096 TTTCTTGAAA
33032106 ATATGTTAATATTTTAT
1 ATATGTTAATATTTTAT
33032123 ATAT-TTAATATTTTA
1 ATATGTTAATATTTTA
33032138 CAATAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (17 bp):
ATATGTTAATATTTTAT
Found at i:33033364 original size:28 final size:28
Alignment explanation
Indices: 33033327--33033389 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
33033317 AAAACAAGTT
* *
33033327 AAAATGAATAATC-TACAAAGCAATTTAA
1 AAAATAAATAA-CATACAAAACAATTTAA
*
33033355 AAAATAAATAACATAGAAAACAATTTAA
1 AAAATAAATAACATACAAAACAATTTAA
33033383 AACAATA
1 AA-AATA
33033390 TGTAAAATGT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
27 1 0.03
28 25 0.83
29 4 0.13
ACGTcount: A:0.63, C:0.10, G:0.05, T:0.22
Consensus pattern (28 bp):
AAAATAAATAACATACAAAACAATTTAA
Found at i:33033598 original size:27 final size:26
Alignment explanation
Indices: 33033568--33033636 Score: 95
Period size: 25 Copynumber: 2.7 Consensus size: 26
33033558 TTAACATAGT
*
33033568 TTAAAATACATAATATATAAAAAAAA
1 TTAAAATAAATAATATATAAAAAAAA
* *
33033594 CTTAAAATAAATAATA-ATAGAAAGAA
1 -TTAAAATAAATAATATATAAAAAAAA
33033620 TTAAAATAAATAATATA
1 TTAAAATAAATAATATA
33033637 AAGTTTAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
25 15 0.39
26 9 0.24
27 14 0.37
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.28
Consensus pattern (26 bp):
TTAAAATAAATAATATATAAAAAAAA
Found at i:33033627 original size:21 final size:20
Alignment explanation
Indices: 33033602--33033649 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
33033592 AACTTAAAAT
33033602 AAATAATAATAGAAAGAATTA
1 AAATAATAATAGAAAG-ATTA
* *
33033623 AAATAAATAATATAAAGTTTA
1 AAAT-AATAATAGAAAGATTA
33033644 AAATAA
1 AAATAA
33033650 ATAAATACAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 2 0.08
21 11 0.46
22 11 0.46
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (20 bp):
AAATAATAATAGAAAGATTA
Found at i:33033650 original size:21 final size:24
Alignment explanation
Indices: 33033568--33033653 Score: 88
Period size: 25 Copynumber: 3.5 Consensus size: 24
33033558 TTAACATAGT
* *
33033568 TTAAAATACATAATATATAAAAAAAA
1 TTAAAATAAATAATA-AT-AAAAGAA
33033594 CTTAAAATAAATAATAATAGAAAGAA
1 -TTAAAATAAATAATAATA-AAAGAA
*
33033620 TTAAAATAAATAAT-AT-AAAG-T
1 TTAAAATAAATAATAATAAAAGAA
33033641 TTAAAATAAATAA
1 TTAAAATAAATAA
33033654 ATACATTCCA
Statistics
Matches: 55, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
21 13 0.24
22 4 0.07
24 2 0.04
25 15 0.27
26 7 0.13
27 14 0.25
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.28
Consensus pattern (24 bp):
TTAAAATAAATAATAATAAAAGAA
Found at i:33034875 original size:24 final size:24
Alignment explanation
Indices: 33034838--33034883 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
33034828 GACTATGGAC
*
33034838 ATTTTAAAATTTGGTTTTATTTTT
1 ATTTTAAAATTTGGGTTTATTTTT
33034862 ATTTATAAAA-TTGGGTTTATTT
1 ATTT-TAAAATTTGGGTTTATTT
33034884 GTTAAGGGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.61
Consensus pattern (24 bp):
ATTTTAAAATTTGGGTTTATTTTT
Found at i:33036121 original size:20 final size:19
Alignment explanation
Indices: 33036088--33036126 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
33036078 AAAAATATTA
33036088 ATAAAAAGTATTAAAAACT
1 ATAAAAAGTATTAAAAACT
*
33036107 ATAAAAATGTTTTAAAAACT
1 ATAAAAA-GTATTAAAAACT
33036127 TACTAAAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.31
Consensus pattern (19 bp):
ATAAAAAGTATTAAAAACT
Found at i:33036244 original size:29 final size:30
Alignment explanation
Indices: 33036212--33036274 Score: 85
Period size: 29 Copynumber: 2.1 Consensus size: 30
33036202 TATTTGAATG
*
33036212 ATTTATATAA-GTTTTCTATAATTTCTAA-A
1 ATTTATATAATGTTTT-TATAATTTATAATA
*
33036241 ATTTTTATAATGTTTTTATAATTTATAATA
1 ATTTATATAATGTTTTTATAATTTATAATA
33036271 ATTT
1 ATTT
33036275 CTAAAAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
29 20 0.67
30 10 0.33
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.57
Consensus pattern (30 bp):
ATTTATATAATGTTTTTATAATTTATAATA
Found at i:33036251 original size:18 final size:18
Alignment explanation
Indices: 33036223--33036280 Score: 53
Period size: 19 Copynumber: 3.0 Consensus size: 18
33036213 TTTATATAAG
33036223 TTTTCTATAATTTCTAAAA
1 TTTT-TATAATTTCTAAAA
* *
33036242 TTTTTATAATGTTTTTATAA
1 TTTTTATAA--TTTCTAAAA
*
33036262 TTTATAATAATTTCTAAAA
1 TTT-TTATAATTTCTAAAA
33036281 AATTTTAATA
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
18 5 0.16
19 11 0.35
20 10 0.32
21 5 0.16
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.55
Consensus pattern (18 bp):
TTTTTATAATTTCTAAAA
Found at i:33036639 original size:25 final size:24
Alignment explanation
Indices: 33036594--33036653 Score: 61
Period size: 25 Copynumber: 2.5 Consensus size: 24
33036584 TTGATTAAGA
* * *
33036594 TAATAAAATAAGGAAATATGAAGTG
1 TAATAAAATAA-AAAAAATGAAATG
33036619 TAATAAAATAAAATAAAATGAAATG
1 TAATAAAATAAAA-AAAATGAAATG
33036644 -AA-AAAATAAA
1 TAATAAAATAAA
33036654 TTTAAGAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
23 8 0.26
24 3 0.10
25 20 0.65
ACGTcount: A:0.67, C:0.00, G:0.12, T:0.22
Consensus pattern (24 bp):
TAATAAAATAAAAAAAATGAAATG
Found at i:33038100 original size:20 final size:20
Alignment explanation
Indices: 33038075--33038113 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
33038065 CTATATACAT
33038075 TTTTTATTTTTATTTTTTTG
1 TTTTTATTTTTATTTTTTTG
33038095 TTTTTATTTTTATTTTTTT
1 TTTTTATTTTTATTTTTTT
33038114 TCAAACATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.10, C:0.00, G:0.03, T:0.87
Consensus pattern (20 bp):
TTTTTATTTTTATTTTTTTG
Found at i:33038113 original size:14 final size:14
Alignment explanation
Indices: 33038074--33038105 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
33038064 TCTATATACA
33038074 TTTTTTATTTTTAT
1 TTTTTTATTTTTAT
*
33038088 TTTTTTGTTTTTAT
1 TTTTTTATTTTTAT
33038102 TTTT
1 TTTT
33038106 ATTTTTTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.09, C:0.00, G:0.03, T:0.88
Consensus pattern (14 bp):
TTTTTTATTTTTAT
Found at i:33040556 original size:25 final size:26
Alignment explanation
Indices: 33040528--33040694 Score: 114
Period size: 25 Copynumber: 6.7 Consensus size: 26
33040518 TCCCAGTATA
* * *
33040528 TGGCTCTCTTGAGCTTCCT-GTTATT
1 TGGCTCTCATGAGCTTCCTCGATAAT
*
33040553 TGGCTCTCACGAGCTT-CTCGATAAT
1 TGGCTCTCATGAGCTTCCTCGATAAT
*
33040578 TGGCTCTCATGAGCTT-CACGAT-AT
1 TGGCTCTCATGAGCTTCCTCGATAAT
* * * * *
33040602 TAGCTCGCATGAGCTT-TTCGTTAAA
1 TGGCTCTCATGAGCTTCCTCGATAAT
* * * *
33040627 TGGCTCGCATGAGCTT-TTCGTTAAA
1 TGGCTCTCATGAGCTTCCTCGATAAT
* * * *
33040652 TGGCTCGCATGAGCTT-TTCGTTAAA
1 TGGCTCTCATGAGCTTCCTCGATAAT
*
33040677 TGGCTCGCATGAGCTTCC
1 TGGCTCTCATGAGCTTCC
33040695 CTTTACATGA
Statistics
Matches: 125, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
24 21 0.17
25 104 0.83
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (26 bp):
TGGCTCTCATGAGCTTCCTCGATAAT
Found at i:33040591 original size:50 final size:49
Alignment explanation
Indices: 33040527--33040694 Score: 178
Period size: 50 Copynumber: 3.4 Consensus size: 49
33040517 ATCCCAGTAT
* * * * * *
33040527 ATGGCTCTCTTGAGCTTCCTGTTATTTGGCTCTCACGAGCTTCTCGATAA
1 ATGGCTCGCATGAGCTTCCTGTTA-TTGGCTCGCATGAGCTTTTCGTTAA
* * * *
33040577 TTGGCTCTCATGAGCTTCAC-GATATTAGCTCGCATGAGCTTTTCGTTAA
1 ATGGCTCGCATGAGCTTC-CTGTTATTGGCTCGCATGAGCTTTTCGTTAA
* *
33040626 ATGGCTCGCATGAGCTT-TTCGTTAAATGGCTCGCATGAGCTTTTCGTTAA
1 ATGGCTCGCATGAGCTTCCT-GTT-ATTGGCTCGCATGAGCTTTTCGTTAA
33040676 ATGGCTCGCATGAGCTTCC
1 ATGGCTCGCATGAGCTTCC
33040695 CTTTACATGA
Statistics
Matches: 98, Mismatches: 15, Indels: 9
0.80 0.12 0.07
Matches are distributed among these distances:
49 37 0.38
50 60 0.61
51 1 0.01
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (49 bp):
ATGGCTCGCATGAGCTTCCTGTTATTGGCTCGCATGAGCTTTTCGTTAA
Found at i:33040713 original size:50 final size:50
Alignment explanation
Indices: 33040609--33040750 Score: 169
Period size: 50 Copynumber: 2.8 Consensus size: 50
33040599 TATTAGCTCG
** * * *
33040609 CATGAGCTTTTCGTTAAATGGCTCGCATGAGCTTTTCGTTAAATGGCTCG
1 CATGAGCTTTTCGTTAAATGGCTCGCATGAGCTTCCCTTTAAATGACTCA
*
33040659 CATGAGCTTTTCGTTAAATGGCTCGCATGAGCTTCCCTTTACATGACTCA
1 CATGAGCTTTTCGTTAAATGGCTCGCATGAGCTTCCCTTTAAATGACTCA
* * * *
33040709 CATGAG-TTTCCTGTTATATGGCTCGAAAGAGCTTCCCGTTTA
1 CATGAGCTTTTC-GTTAAATGGCTCGCATGAGCTTCCC-TTTA
33040751 TATGCTCGTA
Statistics
Matches: 80, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
49 4 0.05
50 72 0.90
51 4 0.05
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (50 bp):
CATGAGCTTTTCGTTAAATGGCTCGCATGAGCTTCCCTTTAAATGACTCA
Found at i:33040730 original size:75 final size:75
Alignment explanation
Indices: 33040604--33040742 Score: 172
Period size: 75 Copynumber: 1.9 Consensus size: 75
33040594 CACGATATTA
** * * * * *
33040604 GCTCGCATGAGCTTTTCGTTAAATGGCTCGCATGAGCTTTTCGTTAAATGGCTCGCATGAGCTTT
1 GCTCGCATGAGCTTCCCGTTAAATGACTCACATGAGCTTTCCGTTAAATGGCTCGAAAGAGCTTT
33040669 TCGTTAAATG
66 TCGTTAAATG
* * *
33040679 GCTCGCATGAGCTTCCCTTTACATGACTCACATGAG-TTTCCTGTTATATGGCTCGAAAGAGCTT
1 GCTCGCATGAGCTTCCCGTTAAATGACTCACATGAGCTTTCC-GTTAAATGGCTCGAAAGAGCTT
33040743 CCCGTTTATA
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
74 4 0.08
75 49 0.92
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.35
Consensus pattern (75 bp):
GCTCGCATGAGCTTCCCGTTAAATGACTCACATGAGCTTTCCGTTAAATGGCTCGAAAGAGCTTT
TCGTTAAATG
Found at i:33040758 original size:75 final size:75
Alignment explanation
Indices: 33040604--33040765 Score: 166
Period size: 75 Copynumber: 2.2 Consensus size: 75
33040594 CACGATATTA
** * * * * * *
33040604 GCTCGCATGAGCTTTTCGTTAAATGGCTCGCATGAGCTTTTCGTTAAATGGCTCGCATGAGCTTT
1 GCTCGCATGAGCTTCCCGTTAAATGACTCACATGAGCTTTCCGTTAAATGGCTCGAAAGAGCTTC
*
33040669 TCGTTAAATG
66 CCGTTAAATG
* * *
33040679 GCTCGCATGAGCTTCCCTTTACATGACTCACATGAG-TTTCCTGTTATATGGCTCGAAAGAGCTT
1 GCTCGCATGAGCTTCCCGTTAAATGACTCACATGAGCTTTCC-GTTAAATGGCTCGAAAGAGCTT
*
33040743 CCCGTTTATAT-
65 CCCG-TTAAATG
*
33040754 GCTCGTATGAGC
1 GCTCGCATGAGC
33040766 ATACCTGTAT
Statistics
Matches: 71, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
74 4 0.06
75 62 0.87
76 5 0.07
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (75 bp):
GCTCGCATGAGCTTCCCGTTAAATGACTCACATGAGCTTTCCGTTAAATGGCTCGAAAGAGCTTC
CCGTTAAATG
Found at i:33040764 original size:50 final size:49
Alignment explanation
Indices: 33040604--33040765 Score: 155
Period size: 50 Copynumber: 3.2 Consensus size: 49
33040594 CACGATATTA
* * * ** * *
33040604 GCTCGCATGAGCTTTTCGTTAAATGGCTCGCATGAGCTTTTCGTTAAAT
1 GCTCGCATGAGCTTTCCGTTAAATGGCTCGAAAGAGCTTCCCTTTACAT
* * *
33040653 GGCTCGCATGAGCTTTTCGTTAAATGGCTCGCATGAGCTTCCCTTTACAT
1 -GCTCGCATGAGCTTTCCGTTAAATGGCTCGAAAGAGCTTCCCTTTACAT
* * *
33040703 GACTCACATGAG-TTTCCTGTTATATGGCTCGAAAGAGCTTCCCGTTTATAT
1 G-CTCGCATGAGCTTTCC-GTTAAATGGCTCGAAAGAGCTTCCC-TTTACAT
*
33040754 GCTCGTATGAGC
1 GCTCGCATGAGC
33040766 ATACCTGTAT
Statistics
Matches: 96, Mismatches: 12, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
49 5 0.05
50 84 0.88
51 7 0.07
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (49 bp):
GCTCGCATGAGCTTTCCGTTAAATGGCTCGAAAGAGCTTCCCTTTACAT
Found at i:33040765 original size:25 final size:25
Alignment explanation
Indices: 33040604--33040765 Score: 100
Period size: 25 Copynumber: 6.5 Consensus size: 25
33040594 CACGATATTA
** *
33040604 GCTCGCATGAGCTTTTCG-TTAAAT
1 GCTCGCATGAGCTTCCCGTTTATAT
** *
33040628 GGCTCGCATGAGCTTTTCG-TTAAAT
1 -GCTCGCATGAGCTTCCCGTTTATAT
** *
33040653 GGCTCGCATGAGCTTTTCG-TTAAAT
1 -GCTCGCATGAGCTTCCCGTTTATAT
*
33040678 GGCTCGCATGAGCTTCCC-TTTACAT
1 -GCTCGCATGAGCTTCCCGTTTATAT
* * *
33040703 GACTCACATGAGTTTCCTG-TTATAT
1 G-CTCGCATGAGCTTCCCGTTTATAT
* *
33040728 GGCTCGAAAGAGCTTCCCGTTTATAT
1 -GCTCGCATGAGCTTCCCGTTTATAT
*
33040754 GCTCGTATGAGC
1 GCTCGCATGAGC
33040766 ATACCTGTAT
Statistics
Matches: 118, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
24 1 0.01
25 110 0.93
26 7 0.06
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (25 bp):
GCTCGCATGAGCTTCCCGTTTATAT
Found at i:33041246 original size:40 final size:39
Alignment explanation
Indices: 33041201--33041308 Score: 119
Period size: 40 Copynumber: 2.7 Consensus size: 39
33041191 CGTTTGGACA
33041201 AAAAACGCCGCTAAAAATCGAGCATTAGCAGCGCTTTAC
1 AAAAACGCCGCTAAAAATCGAGCATTAGCAGCGCTTTAC
* * * * * * *
33041240 ATAAAACGCCGCTAAAGATCCAACATTCGCGGTGCTTTTC
1 A-AAAACGCCGCTAAAAATCGAGCATTAGCAGCGCTTTAC
*
33041280 AAAAAGCGCTGCTAAAAAT-GAGCATTAGC
1 AAAAA-CGCCGCTAAAAATCGAGCATTAGC
33041309 GGCATTTTTC
Statistics
Matches: 55, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
39 12 0.22
40 43 0.78
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.20
Consensus pattern (39 bp):
AAAAACGCCGCTAAAAATCGAGCATTAGCAGCGCTTTAC
Found at i:33041428 original size:41 final size:41
Alignment explanation
Indices: 33041376--33041600 Score: 342
Period size: 41 Copynumber: 5.5 Consensus size: 41
33041366 ATTTTAGGGC
* *
33041376 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATACTTAGGCT
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGCT
* * * *
33041417 TTCAGCAGCGTTTTTGGGAATGCGCCGCTAATGCTCAGGCT
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGCT
* *
33041458 TTTAGCGGCGTTTTTGGGAATGCGCCGCTAATGCTCAGGCT
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGCT
33041499 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGCT
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGCT
* *
33041540 TTTAGCGGCGTTTTTGAGAAAGTGCCGCTAATGCTCAGACT
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGCT
* *
33041581 TTTAGCGACATTTTTGAGAA
1 TTTAGCGGCGTTTTTGAGAA
33041601 TACGCCACAA
Statistics
Matches: 170, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 170 1.00
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.32
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGCT
Found at i:33042029 original size:14 final size:14
Alignment explanation
Indices: 33041998--33042040 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
33041988 AAGGTTTATA
*
33041998 GATTATGGAATTAGG
1 GATTATGG-ATTAAG
33042013 GATTATGGATTAAG
1 GATTATGGATTAAG
* *
33042027 GATTCTGGTTTAAG
1 GATTATGGATTAAG
33042041 AGTTGTGGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
14 17 0.68
15 8 0.32
ACGTcount: A:0.30, C:0.02, G:0.30, T:0.37
Consensus pattern (14 bp):
GATTATGGATTAAG
Found at i:33042338 original size:7 final size:7
Alignment explanation
Indices: 33042324--33042358 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
33042314 ATTGTAAAAG
33042324 AGGGGTT
1 AGGGGTT
*
33042331 AAGGGTT
1 AGGGGTT
33042338 AGGGGTT
1 AGGGGTT
33042345 AGGGGTT
1 AGGGGTT
*
33042352 ATGGGTT
1 AGGGGTT
33042359 TAGGATTTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.17, C:0.00, G:0.51, T:0.31
Consensus pattern (7 bp):
AGGGGTT
Found at i:33045972 original size:13 final size:13
Alignment explanation
Indices: 33045936--33045975 Score: 62
Period size: 15 Copynumber: 2.9 Consensus size: 13
33045926 AAAGCTTTAA
33045936 AATTATTTTAAAT
1 AATTATTTTAAAT
33045949 AATAGTATTTTAAAT
1 AAT--TATTTTAAAT
33045964 AATTATTTTAAA
1 AATTATTTTAAA
33045976 CCAGGTTAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 12 0.48
15 13 0.52
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (13 bp):
AATTATTTTAAAT
Found at i:33046621 original size:12 final size:12
Alignment explanation
Indices: 33046604--33046628 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
33046594 TGATACTGGC
33046604 ATCATTTAGTAT
1 ATCATTTAGTAT
33046616 ATCATTTAGTAT
1 ATCATTTAGTAT
33046628 A
1 A
33046629 CAGATCAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.08, G:0.08, T:0.48
Consensus pattern (12 bp):
ATCATTTAGTAT
Found at i:33049509 original size:47 final size:47
Alignment explanation
Indices: 33049455--33049910 Score: 696
Period size: 47 Copynumber: 9.6 Consensus size: 47
33049445 TATTTGAATA
* *
33049455 AATGTGAAAGTGTATATATGTGATAAGGCTTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
33049502 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
33049551 AATTTGAAAGTGTATATATGTGATAAGGCCGAATGACCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
33049598 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
33049647 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
33049694 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
33049743 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
33049790 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
33049837 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
33049884 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
33049911 TCCCGAAGGG
Statistics
Matches: 375, Mismatches: 28, Indels: 12
0.90 0.07 0.03
Matches are distributed among these distances:
47 243 0.65
49 132 0.35
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:33049567 original size:96 final size:96
Alignment explanation
Indices: 33049455--33049910 Score: 749
Period size: 96 Copynumber: 4.8 Consensus size: 96
33049445 TATTTGAATA
** * *
33049455 AATGTGAAAGTGTATATATGTGATAAGGCTTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
33049520 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* *
33049551 AATTTGAAAGTGTATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
33049616 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
33049647 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
*
33049712 TATGTGATAAGGCCTAATAGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* **
33049743 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
33049806 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
33049837 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
33049901 -ATGTGATAAG
66 TATGTGATAAG
33049911 TCCCGAAGGG
Statistics
Matches: 337, Mismatches: 21, Indels: 6
0.93 0.06 0.02
Matches are distributed among these distances:
94 95 0.28
95 1 0.00
96 241 0.72
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.30
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:33049774 original size:143 final size:140
Alignment explanation
Indices: 33049455--33049910 Score: 705
Period size: 143 Copynumber: 3.2 Consensus size: 140
33049445 TATTTGAATA
* *
33049455 AATGTGAAAGTGTATATATGTGATAAGGCTTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
*
33049520 TATGTGATAAGGCCTAATGGCCGATGTGATGAATTTGAAAGTGTATATATGTGATAAGGCCGAAT
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
33049585 GACCAATGTGATG
129 G-CCAATGTGATG
33049598 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * *
33049663 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGA
*
33049728 ATAGCCGATGTGATG
127 AT-GCCAATGTGATG
*
33049743 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
33049808 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGG
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT-G
*
33049873 CCAACGTGATG
130 CCAATGTGATG
* *
33049884 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
33049911 TCCCGAAGGG
Statistics
Matches: 289, Mismatches: 19, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
141 53 0.18
143 147 0.51
145 88 0.30
146 1 0.00
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.30
Consensus pattern (140 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGC
CAATGTGATG
Found at i:33050167 original size:37 final size:37
Alignment explanation
Indices: 33050029--33050166 Score: 231
Period size: 37 Copynumber: 3.7 Consensus size: 37
33050019 CCGAGCTCTA
*
33050029 AAGACCCGATGACTATGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
33050066 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* *
33050103 AAGACCCGATGACTACGTATGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* *
33050140 AAGACCCGATAACTTCGTGTGGAGATT
1 AAGACCCGATGACTACGTGTGGAGATT
33050167 TCGTCTGAGC
Statistics
Matches: 95, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 95 1.00
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:33051880 original size:43 final size:43
Alignment explanation
Indices: 33051775--33052001 Score: 249
Period size: 43 Copynumber: 5.3 Consensus size: 43
33051765 AGATTCTATT
* ** * * * *
33051775 TTTAGCGGCGTTTTTGCTAGAAGCGTCGCTAAAGGT-TCGTTC
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCTTGGTC
** *
33051817 TTTAGCGGCAATTGTGATAAAAGCGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCTTGGTC
** * * *
33051860 TTTAGCGGCGTTTGCAATAAAAGCGCCGCTAAAAGTTTTGGTC
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCTTGGTC
* * * *
33051903 TTTAGCAGCGTTTGTGGGAAAAGCGCCACTAAAGGTCGTGGTC
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCTTGGTC
*
33051946 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCTTGGTC
* *
33051989 TTCAGCGGTGTTT
1 TTTAGCGGCGTTT
33052002 TTTTCTAAAA
Statistics
Matches: 156, Mismatches: 28, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
42 30 0.19
43 126 0.81
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCTTGGTC
Found at i:33061962 original size:25 final size:25
Alignment explanation
Indices: 33061877--33061949 Score: 128
Period size: 25 Copynumber: 2.9 Consensus size: 25
33061867 GAACTTTCTG
**
33061877 TTACATGGCTCGGATGAGCTTCCCT
1 TTACATGGCTCACATGAGCTTCCCT
33061902 TTACATGGCTCACATGAGCTTCCCT
1 TTACATGGCTCACATGAGCTTCCCT
33061927 TTACATGGCTCACATGAGCTTCC
1 TTACATGGCTCACATGAGCTTCC
33061950 TGTTCATATG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 46 1.00
ACGTcount: A:0.19, C:0.30, G:0.19, T:0.32
Consensus pattern (25 bp):
TTACATGGCTCACATGAGCTTCCCT
Found at i:33064158 original size:30 final size:30
Alignment explanation
Indices: 33064102--33064158 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
33064092 TTAAATTGAT
* * *
33064102 TAATATAATAAAATAAGGAAATATGAAGTA
1 TAATAAAATAAAATAAGAAAAAATGAAGTA
33064132 TAATAAAATAAAATAA-AATAAAATGAA
1 TAATAAAATAAAATAAGAA-AAAATGAA
33064159 AAAATAAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 1 0.04
30 22 0.96
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.25
Consensus pattern (30 bp):
TAATAAAATAAAATAAGAAAAAATGAAGTA
Found at i:33064200 original size:5 final size:5
Alignment explanation
Indices: 33064133--33064185 Score: 52
Period size: 5 Copynumber: 10.2 Consensus size: 5
33064123 TATGAAGTAT
* ** *
33064133 AATAA AATAA AATAA AATAA AATGAA AAAATA AATTT AAGAA AATAA AATAA
1 AATAA AATAA AATAA AATAA AAT-AA AATA-A AATAA AATAA AATAA AATAA
33064185 A
1 A
33064186 TTGGTAAATA
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
5 31 0.82
6 7 0.18
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.21
Consensus pattern (5 bp):
AATAA
Found at i:33069756 original size:29 final size:30
Alignment explanation
Indices: 33069724--33069784 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 30
33069714 TTTATATTTT
*
33069724 AAAATATTTTTAATTA-TTTTTAATTTCTA
1 AAAATAGTTTTAATTATTTTTTAATTTCTA
*
33069753 AAAATAGTTTTAATTATTTTTTAATTTTTA
1 AAAATAGTTTTAATTATTTTTTAATTTCTA
33069783 AA
1 AA
33069785 TTTTAAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 15 0.52
30 14 0.48
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (30 bp):
AAAATAGTTTTAATTATTTTTTAATTTCTA
Found at i:33071519 original size:14 final size:14
Alignment explanation
Indices: 33071500--33071530 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
33071490 ACAGACGTAA
33071500 TGGAAAATGGTTAG
1 TGGAAAATGGTTAG
33071514 TGGAAAATGGTTAG
1 TGGAAAATGGTTAG
33071528 TGG
1 TGG
33071531 TGACTGTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.39, T:0.29
Consensus pattern (14 bp):
TGGAAAATGGTTAG
Found at i:33079863 original size:44 final size:43
Alignment explanation
Indices: 33079801--33079890 Score: 99
Period size: 43 Copynumber: 2.1 Consensus size: 43
33079791 ATTGAAGCAA
* *
33079801 AATAGTAGTTATGGTAATTACAAATATAAAAATAATTATAATTT
1 AATAGAAGTTATGATAATTACAAAT-TAAAAATAATTATAATTT
* ** * **
33079845 AATAGAAGTTATTATAATTGTACATTTTAAATAATTATAATTT
1 AATAGAAGTTATGATAATTACAAATTAAAAATAATTATAATTT
33079888 AAT
1 AAT
33079891 TTACAATTAT
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
43 19 0.50
44 19 0.50
ACGTcount: A:0.48, C:0.02, G:0.08, T:0.42
Consensus pattern (43 bp):
AATAGAAGTTATGATAATTACAAATTAAAAATAATTATAATTT
Found at i:33080107 original size:20 final size:21
Alignment explanation
Indices: 33080074--33080113 Score: 64
Period size: 20 Copynumber: 1.9 Consensus size: 21
33080064 CTTGAATATA
33080074 TTAAAAATGCTTTAATTATAGT
1 TTAAAAAT-CTTTAATTATAGT
33080096 TTAAAAAT-TTTAATTATA
1 TTAAAAATCTTTAATTATA
33080114 ATATTTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.56
22 8 0.44
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (21 bp):
TTAAAAATCTTTAATTATAGT
Found at i:33080119 original size:14 final size:15
Alignment explanation
Indices: 33080102--33080142 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
33080092 TAGTTTAAAA
33080102 ATTTTAATTATA-AT
1 ATTTTAATTATATAT
*
33080116 ATTTAAATTA-ATAT
1 ATTTTAATTATATAT
33080130 ATTTTAATTATAT
1 ATTTTAATTATAT
33080143 TCAATAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
13 1 0.04
14 20 0.87
15 2 0.09
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
ATTTTAATTATATAT
Found at i:33080120 original size:22 final size:23
Alignment explanation
Indices: 33080068--33080122 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 23
33080058 TTTTTTCTTG
33080068 AATATATTAAAAATGCTTTAATTAT
1 AATAT-TTAAAAAT-CTTTAATTAT
*
33080093 -A-GTTTAAAAAT-TTTAATTAT
1 AATATTTAAAAATCTTTAATTAT
33080113 AATATTTAAA
1 AATATTTAAA
33080123 TTAATATATT
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
20 9 0.35
21 1 0.04
22 14 0.54
23 1 0.04
24 1 0.04
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (23 bp):
AATATTTAAAAATCTTTAATTAT
Found at i:33081687 original size:25 final size:24
Alignment explanation
Indices: 33081649--33081708 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 24
33081639 ATCATGGTTC
* *
33081649 TAAAAAATTAAAAAAATATATAAAT
1 TAAAAAATT-AAAAAACATACAAAT
*
33081674 TAAAATAATTAAAACACATACAAAT
1 TAAAA-AATTAAAAAACATACAAAT
33081699 TAAAAAATTA
1 TAAAAAATTA
33081709 TTAAAATTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 5 0.16
25 22 0.71
26 4 0.13
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27
Consensus pattern (24 bp):
TAAAAAATTAAAAAACATACAAAT
Found at i:33082200 original size:18 final size:18
Alignment explanation
Indices: 33082179--33082219 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
33082169 TTTTTATAAA
33082179 TTTTA-ATAATTTTTGAAT
1 TTTTACATAATTTTT-AAT
*
33082197 TTTTACATAGTTTTTAAT
1 TTTTACATAATTTTTAAT
33082215 TTTTA
1 TTTTA
33082220 GAATCATGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 13 0.62
19 8 0.38
ACGTcount: A:0.29, C:0.02, G:0.05, T:0.63
Consensus pattern (18 bp):
TTTTACATAATTTTTAAT
Found at i:33082460 original size:31 final size:31
Alignment explanation
Indices: 33082385--33082460 Score: 73
Period size: 31 Copynumber: 2.5 Consensus size: 31
33082375 TTTTAACGGT
* *
33082385 AGAGT-AACCAAAATCGACAACTAATTTAATG
1 AGAGTGAA-CAAAATCGACAACTAATCTAATA
** * **
33082416 AGAGTGATTAAAATTGACAACTTCTCTAATA
1 AGAGTGAACAAAATCGACAACTAATCTAATA
33082447 AGAGTGAACAAAAT
1 AGAGTGAACAAAAT
33082461 AATAAATTTT
Statistics
Matches: 35, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
31 34 0.97
32 1 0.03
ACGTcount: A:0.47, C:0.13, G:0.14, T:0.25
Consensus pattern (31 bp):
AGAGTGAACAAAATCGACAACTAATCTAATA
Found at i:33095443 original size:19 final size:19
Alignment explanation
Indices: 33095395--33095443 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
33095385 AAACTTTATT
* *
33095395 CGATTTAGTCCAGTTTTTA
1 CGATTTAGTCTAATTTTTA
33095414 CGATTTAGTCTAATTTTTA
1 CGATTTAGTCTAATTTTTA
33095433 CGATTTAGTCT
1 CGATTTAGTCT
33095444 TTGTACCAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.22, C:0.14, G:0.14, T:0.49
Consensus pattern (19 bp):
CGATTTAGTCTAATTTTTA
Found at i:33098714 original size:17 final size:16
Alignment explanation
Indices: 33098687--33098723 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
33098677 AATTTAAATT
33098687 TAAATTTAAATTATTA
1 TAAATTTAAATTATTA
*
33098703 TAAATATTAAATTATTT
1 TAAAT-TTAAATTATTA
33098720 TAAA
1 TAAA
33098724 CGAACAGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
TAAATTTAAATTATTA
Found at i:33100016 original size:21 final size:21
Alignment explanation
Indices: 33099990--33100045 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
33099980 AACAGCAGTG
*
33099990 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTGTA
*
33100011 GCGGTGAGATTGGATACTGTA
1 GCGGTGAGATTAGATACTGTA
*
33100032 GCAGTGAGATTAGA
1 GCGGTGAGATTAGA
33100046 AACAACGGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.27, C:0.09, G:0.36, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:33103439 original size:25 final size:25
Alignment explanation
Indices: 33103411--33103469 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 25
33103401 GAATATGCTG
*
33103411 AGAAGAGAAGATGAAGAACGGAAGA
1 AGAAGAGAAGATGAAGAACAGAAGA
33103436 AGAA-A-AAGGAATGAAGAACAGAAGA
1 AGAAGAGAA-G-ATGAAGAACAGAAGA
33103461 AG--GAGAAGA
1 AGAAGAGAAGA
33103470 GCCTTACCTG
Statistics
Matches: 29, Mismatches: 1, Indels: 10
0.73 0.03 0.25
Matches are distributed among these distances:
23 3 0.10
24 4 0.14
25 22 0.76
ACGTcount: A:0.59, C:0.03, G:0.34, T:0.03
Consensus pattern (25 bp):
AGAAGAGAAGATGAAGAACAGAAGA
Found at i:33103540 original size:6 final size:6
Alignment explanation
Indices: 33103529--33103572 Score: 61
Period size: 6 Copynumber: 7.2 Consensus size: 6
33103519 TTTGCAACCC
* *
33103529 AAGGGG AAGGGG AAAGGG AAGGGG AAGGGG AAGAGGA AAGGGG A
1 AAGGGG AAGGGG AAGGGG AAGGGG AAGGGG AAG-GGG AAGGGG A
33103573 GAAGAAGGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
6 28 0.85
7 5 0.15
ACGTcount: A:0.41, C:0.00, G:0.59, T:0.00
Consensus pattern (6 bp):
AAGGGG
Found at i:33103552 original size:18 final size:19
Alignment explanation
Indices: 33103529--33103572 Score: 72
Period size: 18 Copynumber: 2.4 Consensus size: 19
33103519 TTTGCAACCC
*
33103529 AAGGGGAAGGGGAA-AGGG
1 AAGGGGAAGGGGAAGAGGA
33103547 AAGGGGAAGGGGAAGAGGA
1 AAGGGGAAGGGGAAGAGGA
33103566 AAGGGGA
1 AAGGGGA
33103573 GAAGAAGGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 14 0.58
19 10 0.42
ACGTcount: A:0.41, C:0.00, G:0.59, T:0.00
Consensus pattern (19 bp):
AAGGGGAAGGGGAAGAGGA
Found at i:33103579 original size:24 final size:24
Alignment explanation
Indices: 33103529--33103581 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
33103519 TTTGCAACCC
* **
33103529 AAGGGGAAGGGGAAAGGGAAGGGG
1 AAGGGGAAGAGGAAAGGGAAGAAG
*
33103553 AAGGGGAAGAGGAAAGGGGAGAAG
1 AAGGGGAAGAGGAAAGGGAAGAAG
33103577 AAGGG
1 AAGGG
33103582 TAACCAAACA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.42, C:0.00, G:0.58, T:0.00
Consensus pattern (24 bp):
AAGGGGAAGAGGAAAGGGAAGAAG
Found at i:33107208 original size:28 final size:28
Alignment explanation
Indices: 33107176--33107246 Score: 78
Period size: 28 Copynumber: 2.6 Consensus size: 28
33107166 TAAAAATTTA
33107176 AAAATAATTTTTATATTTTTA-TACTTTT
1 AAAATAATTTTTATATTTTTAGT-CTTTT
* * *
33107204 AAAATAATTTTAATA-ATTTAGTTTTTT
1 AAAATAATTTTTATATTTTTAGTCTTTT
33107231 AAAAT--TTTTTATATTT
1 AAAATAATTTTTATATTT
33107247 ATTTAGATTT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
25 7 0.19
26 1 0.03
27 13 0.36
28 15 0.42
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.59
Consensus pattern (28 bp):
AAAATAATTTTTATATTTTTAGTCTTTT
Found at i:33114019 original size:16 final size:16
Alignment explanation
Indices: 33113998--33114029 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
33113988 TGGTATGTGA
33113998 TAGTTTAAAGTTTGGT
1 TAGTTTAAAGTTTGGT
33114014 TAGTTTAAAGTTTGGT
1 TAGTTTAAAGTTTGGT
33114030 AGCTTAGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (16 bp):
TAGTTTAAAGTTTGGT
Found at i:33118176 original size:41 final size:41
Alignment explanation
Indices: 33118139--33118309 Score: 243
Period size: 41 Copynumber: 4.2 Consensus size: 41
33118129 GACTATATGT
*
33118139 CTAGCAGGCTAAGTGCCGGTGAACCGAATCAGGCTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAGC
* *
33118180 CTAGCAGGATAAGTGCCGGTGAATTGAATCAGGCTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAGC
*
33118221 TTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAGC
** * * * * *
33118262 CTAGCAGGCTAAGTGCTAGTGAATTGAATTAGACTTTAAAC
1 CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAGC
33118303 CTAGCAG
1 CTAGCAG
33118310 ATGAAGTGCT
Statistics
Matches: 116, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 116 1.00
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.22
Consensus pattern (41 bp):
CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAGC
Found at i:33118308 original size:82 final size:82
Alignment explanation
Indices: 33118111--33118309 Score: 265
Period size: 82 Copynumber: 2.4 Consensus size: 82
33118101 TCGGATTTAT
* ***
33118111 TGCCAGTGAAATT-ATTCAGACTATATGTCTAGCAGGCTAAGTGCCGGTGAACCGAATCAGGCTA
1 TGCCAGTG-AATTGAATCAGACTATAAACCTAGCAGGCTAAGTGCCGGTGAACCGAATCAGGCTA
33118175 TAAGCCTAGCAGGATAAG
65 TAAGCCTAGCAGGATAAG
* * * * *
33118193 TGCCGGTGAATTGAATCAGGCTATAAGCTTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTAT
1 TGCCAGTGAATTGAATCAGACTATAAACCTAGCAGGCTAAGTGCCGGTGAACCGAATCAGGCTAT
*
33118258 AAGCCTAGCAGGCTAAG
66 AAGCCTAGCAGGATAAG
* * *
33118275 TGCTAGTGAATTGAATTAGACTTTAAACCTAGCAG
1 TGCCAGTGAATTGAATCAGACTATAAACCTAGCAG
33118310 ATGAAGTGCT
Statistics
Matches: 101, Mismatches: 15, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
81 4 0.04
82 97 0.96
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (82 bp):
TGCCAGTGAATTGAATCAGACTATAAACCTAGCAGGCTAAGTGCCGGTGAACCGAATCAGGCTAT
AAGCCTAGCAGGATAAG
Found at i:33125876 original size:41 final size:41
Alignment explanation
Indices: 33125839--33126018 Score: 279
Period size: 41 Copynumber: 4.4 Consensus size: 41
33125829 GACTATATGT
*
33125839 CTAGCAGGCTAAGTGCCGGTGAACCGAATCAGGCTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAGC
*
33125880 CTAGCAGGCTAAGTGCCGGTGAATTGAATCAGGCTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAGC
33125921 CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAGC
* * * * *
33125962 CTAGCAGGCTAAGTGCCAGTGAACTGAATTAGACTTTAAAC
1 CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAGC
* *
33126003 CTAGCAGACGAAGTGC
1 CTAGCAGGCTAAGTGC
33126019 TAGTGAATCT
Statistics
Matches: 129, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 129 1.00
ACGTcount: A:0.31, C:0.22, G:0.28, T:0.20
Consensus pattern (41 bp):
CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAGC
Found at i:33126024 original size:41 final size:41
Alignment explanation
Indices: 33125811--33126025 Score: 268
Period size: 41 Copynumber: 5.2 Consensus size: 41
33125801 TCGGATTTAT
* * * * * *
33125811 TGCCAGTGAAATTATTCAGACTATATGTCTAGCAGGCTAAG
1 TGCCAGTGAACTGAATCAGGCTATAAGCCTAGCAGGCTAAG
* *
33125852 TGCCGGTGAACCGAATCAGGCTATAAGCCTAGCAGGCTAAG
1 TGCCAGTGAACTGAATCAGGCTATAAGCCTAGCAGGCTAAG
* *
33125893 TGCCGGTGAATTGAATCAGGCTATAAGCCTAGCAGGCTAAG
1 TGCCAGTGAACTGAATCAGGCTATAAGCCTAGCAGGCTAAG
*
33125934 TGCCGGTGAACTGAATCAGGCTATAAGCCTAGCAGGCTAAG
1 TGCCAGTGAACTGAATCAGGCTATAAGCCTAGCAGGCTAAG
* * * * * *
33125975 TGCCAGTGAACTGAATTAGACTTTAAACCTAGCAGACGAAG
1 TGCCAGTGAACTGAATCAGGCTATAAGCCTAGCAGGCTAAG
*
33126016 TGCTAGTGAA
1 TGCCAGTGAA
33126026 TCTGTTTAAA
Statistics
Matches: 155, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 155 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (41 bp):
TGCCAGTGAACTGAATCAGGCTATAAGCCTAGCAGGCTAAG
Found at i:33127866 original size:31 final size:31
Alignment explanation
Indices: 33127835--33127946 Score: 120
Period size: 31 Copynumber: 3.6 Consensus size: 31
33127825 CAATATATAT
*
33127835 TCATATACGAATCAAATTCGACAATGAATAT
1 TCATATACGAATCAAATTCGACAATGAATAA
* * *
33127866 TGATATACCAAAC-AATTCGACAAT-ATATAA
1 TCATATACGAATCAAATTCGACAATGA-ATAA
* * * *
33127896 CCATATACGAATCAAATTTGGCAATGTATAA
1 TCATATACGAATCAAATTCGACAATGAATAA
*
33127927 TCATATACAAATCAAATTCG
1 TCATATACGAATCAAATTCG
33127947 GCATCCTATA
Statistics
Matches: 64, Mismatches: 14, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
29 1 0.02
30 23 0.36
31 40 0.62
ACGTcount: A:0.46, C:0.17, G:0.09, T:0.29
Consensus pattern (31 bp):
TCATATACGAATCAAATTCGACAATGAATAA
Found at i:33127933 original size:61 final size:61
Alignment explanation
Indices: 33127817--33127934 Score: 157
Period size: 61 Copynumber: 1.9 Consensus size: 61
33127807 ATGCTCAATT
** * *
33127817 CAATTCAGCAATATATATTCATATACGAATCAAATTCGACAATGAATATTGATATACCAAA
1 CAATTCAGCAATATATAACCATATACGAATCAAATTCGACAATGAATAATCATATACCAAA
* * *
33127878 CAATTC-GACAATATATAACCATATACGAATCAAATTTGGCAATGTATAATCATATAC
1 CAATTCAG-CAATATATAACCATATACGAATCAAATTCGACAATGAATAATCATATAC
33127935 AAATCAAATT
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
60 1 0.02
61 48 0.98
ACGTcount: A:0.45, C:0.17, G:0.08, T:0.30
Consensus pattern (61 bp):
CAATTCAGCAATATATAACCATATACGAATCAAATTCGACAATGAATAATCATATACCAAA
Found at i:33127962 original size:31 final size:31
Alignment explanation
Indices: 33127818--33127962 Score: 107
Period size: 31 Copynumber: 4.7 Consensus size: 31
33127808 TGCTCAATTC
* * * *
33127818 AATTCAGCAATATATATTCATATACGAATCA
1 AATTCGGCAATCTATAATCATATACAAATCA
* ** * *
33127849 AATTCGACAATGAATATTGATATACCAAA-C-
1 AATTCGGCAATCTATAATCATATA-CAAATCA
* * * *
33127879 AATTCGACAATATATAACCATATACGAATCA
1 AATTCGGCAATCTATAATCATATACAAATCA
* *
33127910 AATTTGGCAATGTATAATCATATACAAATCA
1 AATTCGGCAATCTATAATCATATACAAATCA
*
33127941 AATTCGGC-ATCCTATATTCATA
1 AATTCGGCAAT-CTATAATCATA
33127963 AATAATTTAA
Statistics
Matches: 90, Mismatches: 20, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
29 3 0.03
30 22 0.24
31 62 0.69
32 3 0.03
ACGTcount: A:0.44, C:0.17, G:0.08, T:0.30
Consensus pattern (31 bp):
AATTCGGCAATCTATAATCATATACAAATCA
Found at i:33128008 original size:31 final size:31
Alignment explanation
Indices: 33127973--33128218 Score: 147
Period size: 31 Copynumber: 8.0 Consensus size: 31
33127963 AATAATTTAA
* *
33127973 TTTCAACAATGTATACCCATATACAAATTAT
1 TTTCAGCAATGTATAACCATATACAAATTAT
** *
33128004 TTTCAGCAATGT-TCAACCATATATGAATCA-
1 TTTCAGCAATGTAT-AACCATATACAAATTAT
* *
33128034 TTTC-GACAACT-TATGTA-CATATAC-AATTCAA
1 TTTCAG-CAA-TGTAT-AACCATATACAAATT-AT
* *
33128065 TTTCAGCAATGTACAACCATATATAAATTAT
1 TTTCAGCAATGTATAACCATATACAAATTAT
* *
33128096 TTTCAGCAATGT-TCAACCATATACGAATCA-
1 TTTCAGCAATGTAT-AACCATATACAAATTAT
* * *
33128126 TTTCGGCAACT-AATATA-CATATAC-AATTCAA
1 TTTCAGCAA-TGTATA-ACCATATACAAATT-AT
*
33128157 TTTCAGCAATGTATAACCATATAAAAAATTAT
1 TTTCAGCAATGTATAACCATAT-ACAAATTAT
* * *
33128189 TTTTAGCAGTGT-TCAACCATATACGAATTA
1 TTTCAGCAATGTAT-AACCATATACAAATTA
33128219 ATATATCCAT
Statistics
Matches: 166, Mismatches: 28, Indels: 42
0.70 0.12 0.18
Matches are distributed among these distances:
29 7 0.04
30 37 0.22
31 93 0.56
32 25 0.15
33 4 0.02
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.34
Consensus pattern (31 bp):
TTTCAGCAATGTATAACCATATACAAATTAT
Found at i:33128093 original size:92 final size:92
Alignment explanation
Indices: 33127966--33128216 Score: 385
Period size: 92 Copynumber: 2.7 Consensus size: 92
33127956 ATTCATAAAT
* * * * *
33127966 AATTTAATTTCAACAATGTATACCCATATACAAATTATTTTCAGCAATGTTCAACCATATATGAA
1 AATTCAATTTCAGCAATGTATAACCATATAAAAATTATTTTCAGCAATGTTCAACCATATACGAA
* *
33128031 TCATTTCGACAACTTATGTACATATAC
66 TCATTTCGACAACTAATATACATATAC
* *
33128058 AATTCAATTTCAGCAATGTACAACCATATATAAATTATTTTCAGCAATGTTCAACCATATACGAA
1 AATTCAATTTCAGCAATGTATAACCATATAAAAATTATTTTCAGCAATGTTCAACCATATACGAA
*
33128123 TCATTTCGGCAACTAATATACATATAC
66 TCATTTCGACAACTAATATACATATAC
* *
33128150 AATTCAATTTCAGCAATGTATAACCATATAAAAAATTATTTTTAGCAGTGTTCAACCATATACGA
1 AATTCAATTTCAGCAATGTATAACCATAT-AAAAATTATTTTCAGCAATGTTCAACCATATACGA
33128215 AT
65 AT
33128217 TAATATATCC
Statistics
Matches: 145, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
92 111 0.77
93 34 0.23
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.34
Consensus pattern (92 bp):
AATTCAATTTCAGCAATGTATAACCATATAAAAATTATTTTCAGCAATGTTCAACCATATACGAA
TCATTTCGACAACTAATATACATATAC
Found at i:33147039 original size:190 final size:189
Alignment explanation
Indices: 33146709--33147087 Score: 704
Period size: 190 Copynumber: 2.0 Consensus size: 189
33146699 ACAACCCTTT
* *
33146709 GTACATCCAACGGTATATTCTTATACAATCTATTCACCCGAACAAATTGACTTAACGAACTAAGT
1 GTACATACAACGGTATATTCTTATACAATCTATTCACCCAAACAAATTGACTTAACGAACTAAGT
33146774 ACAAAAATCTCATCGGAAGTGCTCTTAACAGGAATCTGAAAGTTTACAAAAATAGAACTAGCTAC
66 ACAAAAATCTCATCGGAAGTGCTCTTAACAGGAATCTGAAAGTTTACAAAAATAGAACTAGCTAC
33146839 ATAGGAATGTGTTGACCCTATGTCTATCAATGTAAAATAAGGGGCATCAAAAATAAAGAA
131 ATAGGAATGTGTTGA-CCTATGTCTATCAATGTAAAATAAGGGGCATCAAAAATAAAGAA
*
33146899 GTACATACAACGGTATATTCTTATACAATCTATTCACCCAAACAGATTGACTTAACGAACTAAGT
1 GTACATACAACGGTATATTCTTATACAATCTATTCACCCAAACAAATTGACTTAACGAACTAAGT
* *
33146964 ACAGAAATTTCATCGGAAGTGCTCTTAACAGGAATCTGAAAGTTTACAAAAATAGAACTAGCTAC
66 ACAAAAATCTCATCGGAAGTGCTCTTAACAGGAATCTGAAAGTTTACAAAAATAGAACTAGCTAC
33147029 ATAGGAATGTGTTGACCTATGTCTATCAATGTAAAATAAGGGGCATCAAAAATAAAGAA
131 ATAGGAATGTGTTGACCTATGTCTATCAATGTAAAATAAGGGGCATCAAAAATAAAGAA
33147088 CATACCCATA
Statistics
Matches: 184, Mismatches: 5, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
189 44 0.24
190 140 0.76
ACGTcount: A:0.41, C:0.17, G:0.16, T:0.26
Consensus pattern (189 bp):
GTACATACAACGGTATATTCTTATACAATCTATTCACCCAAACAAATTGACTTAACGAACTAAGT
ACAAAAATCTCATCGGAAGTGCTCTTAACAGGAATCTGAAAGTTTACAAAAATAGAACTAGCTAC
ATAGGAATGTGTTGACCTATGTCTATCAATGTAAAATAAGGGGCATCAAAAATAAAGAA
Found at i:33154758 original size:18 final size:18
Alignment explanation
Indices: 33154724--33154758 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
33154714 ATCTCTTTGA
* *
33154724 TATATTTTTATAGTTTTT
1 TATATTTTTAAAATTTTT
33154742 TATATTTTTAAAATTTT
1 TATATTTTTAAAATTTT
33154759 ATATTATTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.69
Consensus pattern (18 bp):
TATATTTTTAAAATTTTT
Found at i:33154947 original size:30 final size:31
Alignment explanation
Indices: 33154911--33154996 Score: 104
Period size: 33 Copynumber: 2.7 Consensus size: 31
33154901 TTTAGGCTTC
*
33154911 AATAATTAAAAATCAAGTAAGTCCTTT-TAA
1 AATAATTAAAAATCAATTAAGTCCTTTGTAA
*
33154941 AATAATTTAAAAAATTTAATTAAG-CCTTTGTAA
1 AATAA-TT-AAAAA-TCAATTAAGTCCTTTGTAA
*
33154974 AATAATTAAAGATCAATTAAGTC
1 AATAATTAAAAATCAATTAAGTC
33154997 ATCCCTATTA
Statistics
Matches: 47, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
30 13 0.28
31 7 0.15
32 12 0.26
33 15 0.32
ACGTcount: A:0.50, C:0.08, G:0.07, T:0.35
Consensus pattern (31 bp):
AATAATTAAAAATCAATTAAGTCCTTTGTAA
Found at i:33160682 original size:177 final size:175
Alignment explanation
Indices: 33160376--33160837 Score: 444
Period size: 177 Copynumber: 2.6 Consensus size: 175
33160366 TAAACTGCGA
* * * * * * **
33160376 GAATAAATTCTGAAATAGATTTTA-TTAAATTTAAT-T-CTAATTTAGAAACAA-AATAAAATAA
1 GAATAAATCCCGAAATAGATTATATTTAACTTTAATCTCCT-GTTTAGAAATAATAA-AAAATGG
* * * *
33160437 AATAAAATCTTGTTAAACGGCGGGAATAAATCCC-AAAATAGATTTTA-TTTAATTTTAATTTCT
64 AATAAAAT-TTGTTGAACGACGGGAATAAATCCCGAAACT-GATTTTATTTTAATTTTAATTACT
** * *
33160500 CGTTTTTGGCAACAAAATCAAAA-TGTAAT-AAA-TCTGTTGAACGGCAG
127 CGTTTTTGAAAACAAAATCAAAATTGGAATAAAATTC-GTTGAACAGCAG
* * * * *
33160547 GAATAAATCTCGAAATAGATTTTATTTTAATTTTAATACTCGTTTTATAGAAATAA-AATCAAAA
1 GAATAAATCCCGAAATAGATTATA-TTTAACTTTAAT-CTCCTGTT-TAGAAATAATAA--AAAA
* *
33160611 TTGTAATAAAATTTATTGAACGACGGGAATAAATCCCGAAACTGATTTTATTTTAATTTTAA-TA
61 -TGGAATAAAATTTGTTGAACGACGGGAATAAATCCCGAAACTGATTTTATTTTAATTTTAATTA
* **
33160675 CTCGTTTTTGAAAATAAAATCAAAATTGGAATAAAATTCGTTGAACAGTGG
125 CTCGTTTTTGAAAACAAAATCAAAATTGGAATAAAATTCGTTGAACAGCAG
* * *
33160726 GAATAAATCCCGAAATGGATTATATTTAACTTTAATTTCCTGTTTGGAAATAATAAAAAATGGAA
1 GAATAAATCCCGAAATAGATTATATTTAACTTTAATCTCCTGTTTAGAAATAATAAAAAATGGAA
** *
33160791 TAAAATACGTTGAACGACGTGAATAAATCCCGAAAC-GAATTTTATTT
66 TAAAATTTGTTGAACGACGGGAATAAATCCCGAAACTG-ATTTTATTT
33160838 ACTTTGAATT
Statistics
Matches: 241, Mismatches: 35, Indels: 27
0.80 0.12 0.09
Matches are distributed among these distances:
171 21 0.09
173 11 0.05
174 45 0.19
175 7 0.03
176 19 0.08
177 63 0.26
178 40 0.17
179 33 0.14
180 2 0.01
ACGTcount: A:0.43, C:0.10, G:0.13, T:0.35
Consensus pattern (175 bp):
GAATAAATCCCGAAATAGATTATATTTAACTTTAATCTCCTGTTTAGAAATAATAAAAAATGGAA
TAAAATTTGTTGAACGACGGGAATAAATCCCGAAACTGATTTTATTTTAATTTTAATTACTCGTT
TTTGAAAACAAAATCAAAATTGGAATAAAATTCGTTGAACAGCAG
Found at i:33160735 original size:89 final size:88
Alignment explanation
Indices: 33160437--33160825 Score: 377
Period size: 89 Copynumber: 4.4 Consensus size: 88
33160427 AATAAAATAA
* * * * *
33160437 AATAAAATCTTGTTAAACGGCGGGAATAAATCCCAAAATAGATTTTA-TTTAATTTTAATTTCTC
1 AATAAAAT-TCGTTGAACAGCGGGAATAAATCCCGAAATAGATTTTATTTTAATTTTAA-TACTC
** * *
33160501 GTTTTTGGCAACAAAATCAAAATGT
64 GTTTTTGAAAATAAAATCAAAATGG
* * *
33160526 AAT-AAA-TCTGTTGAACGGCAGGAATAAATCTCGAAATAGATTTTATTTTAATTTTAATACTCG
1 AATAAAATTC-GTTGAACAGCGGGAATAAATCCCGAAATAGATTTTATTTTAATTTTAATACTCG
*
33160589 TTTTAT-AGAAATAAAATCAAAATTGT
65 TTTT-TGA-AAATAAAATCAAAA-TGG
**
33160615 AATAAAATTTATTGAAC-GACGGGAATAAATCCCGAAACT-GATTTTATTTTAATTTTAATACTC
1 AATAAAATTCGTTGAACAG-CGGGAATAAATCCCGAAA-TAGATTTTATTTTAATTTTAATACTC
33160678 GTTTTTGAAAATAAAATCAAAATTGG
64 GTTTTTGAAAATAAAATCAAAA-TGG
* * * * * *
33160704 AATAAAATTCGTTGAACAGTGGGAATAAATCCCGAAATGGATTATA-TTTAACTTTAAT-TTCCT
1 AATAAAATTCGTTGAACAGCGGGAATAAATCCCGAAATAGATTTTATTTTAATTTTAATACTCGT
* *
33160767 GTTTGGAAATAATAA--AAAATGG
66 TTTTGAAAATAA-AATCAAAATGG
* *
33160789 AATAAAATACGTTGAAC-GACGTGAATAAATCCCGAAA
1 AATAAAATTCGTTGAACAG-CGGGAATAAATCCCGAAA
33160826 CGAATTTTAT
Statistics
Matches: 260, Mismatches: 26, Indels: 32
0.82 0.08 0.10
Matches are distributed among these distances:
84 1 0.00
85 35 0.13
86 5 0.02
87 54 0.21
88 41 0.16
89 66 0.25
90 56 0.22
91 2 0.01
ACGTcount: A:0.42, C:0.11, G:0.14, T:0.34
Consensus pattern (88 bp):
AATAAAATTCGTTGAACAGCGGGAATAAATCCCGAAATAGATTTTATTTTAATTTTAATACTCGT
TTTTGAAAATAAAATCAAAATGG
Found at i:33162955 original size:19 final size:21
Alignment explanation
Indices: 33162933--33162972 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
33162923 GAAGGTAGAA
33162933 CTTG-TTTTTTTCC-TGATTT
1 CTTGTTTTTTTTCCTTGATTT
33162952 CTTGTTTTTTTTCCTTGATTT
1 CTTGTTTTTTTTCCTTGATTT
33162973 TTTTCTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.21
20 9 0.47
21 6 0.32
ACGTcount: A:0.05, C:0.15, G:0.10, T:0.70
Consensus pattern (21 bp):
CTTGTTTTTTTTCCTTGATTT
Found at i:33162961 original size:21 final size:20
Alignment explanation
Indices: 33162937--33162984 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
33162927 GTAGAACTTG
33162937 TTTTTTTCC-TGATTTCTTGT-
1 TTTTTTTCCTTGATTT-TT-TC
33162957 TTTTTTTCCTTGATTTTTTTC
1 TTTTTTTCCTTGA-TTTTTTC
33162978 TTTTTTT
1 TTTTTTT
33162985 AGAAGAAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
20 10 0.40
21 12 0.48
22 3 0.12
ACGTcount: A:0.04, C:0.12, G:0.06, T:0.77
Consensus pattern (20 bp):
TTTTTTTCCTTGATTTTTTC
Found at i:33163789 original size:19 final size:19
Alignment explanation
Indices: 33163761--33163824 Score: 101
Period size: 19 Copynumber: 3.3 Consensus size: 19
33163751 AATTTTCGAG
*
33163761 GATATACAATCTTAGATAT
1 GATATGCAATCTTAGATAT
33163780 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
33163799 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
33163820 GATAT
1 GATAT
33163825 ATACAATCTT
Statistics
Matches: 42, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
19 23 0.55
21 19 0.45
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:33163843 original size:19 final size:21
Alignment explanation
Indices: 33163762--33163837 Score: 120
Period size: 21 Copynumber: 3.7 Consensus size: 21
33163752 ATTTTCGAGG
33163762 ATATACAATCTTAGATATG--
1 ATATACAATCTTAGATATGAT
*
33163781 ATATGCAATCTTAGATATGAT
1 ATATACAATCTTAGATATGAT
*
33163802 ATATGCAATCTTAGATATGAT
1 ATATACAATCTTAGATATGAT
33163823 ATATACAATCTTAGA
1 ATATACAATCTTAGA
33163838 AAATATGATT
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
19 18 0.34
21 35 0.66
ACGTcount: A:0.41, C:0.11, G:0.12, T:0.37
Consensus pattern (21 bp):
ATATACAATCTTAGATATGAT
Found at i:33164058 original size:19 final size:21
Alignment explanation
Indices: 33164034--33164072 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
33164024 CTGTTTTCTT
*
33164034 TTTTTTTCTT-TTT-CGATTA
1 TTTTTTACTTATTTACGATTA
33164053 TTTTTTACTTATTTACGATT
1 TTTTTTACTTATTTACGATT
33164073 TTAAAAAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.15, C:0.10, G:0.05, T:0.69
Consensus pattern (21 bp):
TTTTTTACTTATTTACGATTA
Found at i:33169563 original size:7 final size:7
Alignment explanation
Indices: 33169532--33169580 Score: 53
Period size: 7 Copynumber: 6.7 Consensus size: 7
33169522 TGAGTCGAAA
33169532 AAAAATG
1 AAAAATG
*
33169539 ACGAAATG
1 A-AAAATG
33169547 AAAAAATG
1 -AAAAATG
*
33169555 AAAAGTG
1 AAAAATG
*
33169562 AAAAATA
1 AAAAATG
33169569 AAAAATG
1 AAAAATG
33169576 AAAAA
1 AAAAA
33169581 GTAAAATGGA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
7 23 0.68
8 10 0.29
9 1 0.03
ACGTcount: A:0.71, C:0.02, G:0.14, T:0.12
Consensus pattern (7 bp):
AAAAATG
Found at i:33169565 original size:14 final size:14
Alignment explanation
Indices: 33169542--33169586 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
33169532 AAAAATGACG
*
33169542 AAATGAAAAAATGAA
1 AAATG-AAAAATAAA
*
33169557 AAGTGAAAAATAAA
1 AAATGAAAAATAAA
33169571 AAATGAAAAAGTAAA
1 AAATGAAAAA-TAAA
33169586 A
1 A
33169587 TGGAGAGGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
14 17 0.65
15 9 0.35
ACGTcount: A:0.73, C:0.00, G:0.13, T:0.13
Consensus pattern (14 bp):
AAATGAAAAATAAA
Found at i:33171060 original size:132 final size:132
Alignment explanation
Indices: 33170823--33171795 Score: 1416
Period size: 132 Copynumber: 7.5 Consensus size: 132
33170813 ACTGGTGAAA
* *
33170823 CACCAAGCCTTGTCTCCCTGAGCAACAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
* * * *
33170888 GCAGTAGTAGAGCAAATCGAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAC
66 GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
33170953 GC
131 GC
* * * **
33170955 CACCAAGCCTTGTCTCCCTAAGCCGTAGCAAAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
* * *
33171020 GCAGTAGTGGGGCAGATCAAAGACGGTAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
33171085 GC
131 GC
* * *
33171087 CACAAAGCCTTGTCTCCCTGAGCAGCAGTGGAGTA----G--G-TTGTAGATCCTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
*
33171145 GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTCA
66 GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
33171210 GC
131 GC
* * * *
33171212 CACCAAGCCTTGTTTCCCTGAGCAGCAGCAGAGAAGGTTAAAGATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
* * * *
33171277 GCAGTAGTGGAGTAGATTGAAGACGACAAATCTTATCTTTCCAAGATAGCGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
33171342 GC
131 GC
33171344 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
* * *
33171409 GCAGTAGTGGAGCAGATCAAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGTAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
33171474 GC
131 GC
* * * *
33171476 CACAAAGCCTTGCCTCCCTGAGCAGCAGCGGAGTA----G--G-TTGTAGATCCTATCTTCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
* * * * *
33171534 GCAGTAATGGAGCAAATTGAAGACGGCAAATCTTATATTTCCAAGATAGTGGGAAGCAGATTTTA
66 GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
33171599 GC
131 GC
* *
33171601 CACCAAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
* * *
33171666 GCAGTAGTGGAGCAGATCAAAGACGACAAATCTTATTTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
33171731 GC
131 GC
* * * * *
33171733 CGCCAAGCCTTATCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATGGCAAATCTTATCTCCCT
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
33171796 GAAGTTGCAG
Statistics
Matches: 748, Mismatches: 79, Indels: 28
0.87 0.09 0.03
Matches are distributed among these distances:
125 222 0.30
126 2 0.00
128 2 0.00
129 1 0.00
131 2 0.00
132 519 0.69
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (132 bp):
CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
GC
Found at i:33171310 original size:44 final size:44
Alignment explanation
Indices: 33171262--33171446 Score: 128
Period size: 44 Copynumber: 4.2 Consensus size: 44
33171252 AAGATTGTAG
*
33171262 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGACGACAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGACAA
* * * *
33171306 ATCTTATCTTTCC-AAG-A-TAGCGGGAAGCAGATTTAAG-CCACCAA
1 ATCTTATC-TCCCTAAGCAGTAG-TGG-AGCAGATTGAAGACGA-CAA
** * * * * * * * * *
33171350 GCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTG-TAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGA-CGACAA
**
33171394 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGACAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGACAA
33171438 ATCTTATCT
1 ATCTTATCT
33171447 TTCCAAGATA
Statistics
Matches: 99, Mismatches: 32, Indels: 20
0.66 0.21 0.13
Matches are distributed among these distances:
42 3 0.03
43 9 0.09
44 79 0.80
45 6 0.06
46 2 0.02
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGACAA
Found at i:33171323 original size:257 final size:257
Alignment explanation
Indices: 33170823--33171795 Score: 1285
Period size: 257 Copynumber: 3.7 Consensus size: 257
33170813 ACTGGTGAAA
* *
33170823 CACCAAGCCTTGTCTCCCTGAGCAACAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGC-G-G-A-G-T--AGGTTGTAGATCTTATCTCCCTAA
* * * * * *
33170888 GCAGTAGTAGAGCAAATCGAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAC
59 GCAGTAGTGGAGCAGATCAAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
* * * *
33170953 GCCACCAAGCCTTGTCTCCCTAAGCCGTAGCAAAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
124 GCCACCAAGCCTTGTCTCCCTGAGCAGCAGCAGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
* ** *
33171018 AAGCAGTAGTGGGGCAGATCAAAGACGGTAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTT
189 AAGCAGTAGTGGAGCAGATTGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTT
33171083 AAGC
254 AAGC
* * *
33171087 CACAAAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGTAGATCCTATCTCCCTAAGCAGTAG
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGTAGATCTTATCTCCCTAAGCAGTAG
* * *
33171152 TGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTCAGCCACCA
66 TGGAGCAGATCAAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCA
* * *
33171217 AGCCTTGTTTCCCTGAGCAGCAGCAGAGAAGGTTAAAGATTGTAGATCTTATCTCCCTAAGCAGT
131 AGCCTTGTCTCCCTGAGCAGCAGCAGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGT
* * *
33171282 AGTGGAGTAGATTGAAGACGACAAATCTTATCTTTCCAAGATAGCGGGAAGCAGATTTAAGC
196 AGTGGAGCAGATTGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
33171344 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTA----G--G-TTGTAGATCTTATCTCCCTAA
*
33171409 GCAGTAGTGGAGCAGATCAAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGTAGATTTAA
59 GCAGTAGTGGAGCAGATCAAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
* * * * *
33171474 GCCACAAAGCCTTGCCTCCCTGAGCAGCAGC-G-G-A-G-T--AGGTTGTAGATCCTATCTTCCT
124 GCCACCAAGCCTTGTCTCCCTGAGCAGCAGCAGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
* * *
33171532 AAGCAGTAATGGAGCAAATTGAAGACGGCAAATCTTATATTTCCAAGATAGTGGGAAGCAGATTT
189 AAGCAGTAGTGGAGCAGATTGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTT
*
33171597 TAGC
254 AAGC
* *
33171601 CACCAAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGC-G-G-A-G-T--AGGTTGTAGATCTTATCTCCCTAA
*
33171666 GCAGTAGTGGAGCAGATCAAAGACGACAAATCTTATTTTTCCAAGATAGTGGGAAGCAGATTTAA
59 GCAGTAGTGGAGCAGATCAAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
* * * * * *
33171731 GCCGCCAAGCCTTATCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATGGCAAATCTTATCTCCCT
124 GCCACCAAGCCTTGTCTCCCTGAGCAGCAGCAGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
33171796 GAAGTTGCAG
Statistics
Matches: 630, Mismatches: 58, Indels: 42
0.86 0.08 0.06
Matches are distributed among these distances:
257 455 0.72
258 2 0.00
259 4 0.01
260 5 0.01
261 5 0.01
262 4 0.01
263 3 0.00
264 152 0.24
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (257 bp):
CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGTAGATCTTATCTCCCTAAGCAGTAG
TGGAGCAGATCAAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCA
AGCCTTGTCTCCCTGAGCAGCAGCAGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGT
AGTGGAGCAGATTGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
Done.