Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53248092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1300000 characters in sequence are not A, C, G, or T
File 105 of 175
Found at i:33479201 original size:15 final size:17
Alignment explanation
Indices: 33479163--33479202 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
33479153 TTATGGATTG
*
33479163 ATTTGAATGAATGTGAA
1 ATTTGAATGAATGTCAA
33479180 A-TTGAAT-AAT-TCAA
1 ATTTGAATGAATGTCAA
33479194 ATTTGAATG
1 ATTTGAATG
33479203 TATTTAGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 5
0.77 0.04 0.19
Matches are distributed among these distances:
14 4 0.20
15 9 0.45
16 6 0.30
17 1 0.05
ACGTcount: A:0.42, C:0.03, G:0.17, T:0.38
Consensus pattern (17 bp):
ATTTGAATGAATGTCAA
Found at i:33479595 original size:42 final size:42
Alignment explanation
Indices: 33479534--33479642 Score: 116
Period size: 43 Copynumber: 2.6 Consensus size: 42
33479524 GATTTGAGAT
*
33479534 TTACGTGTAAGACCATGTCTGGGACATCA-AT-ATC-ATATTTGA
1 TTACATGTAAGACCATGTCTGGG--AT-AGATCATCAATATTTGA
* *
33479576 TTTCATGTAAGACCCTGTCTGGGATAGATGCATCAATATTTGA
1 TTACATGTAAGACCATGTCTGGGATAGAT-CATCAATATTTGA
**
33479619 TTACATGTAAGACCACATCTGGGA
1 TTACATGTAAGACCATGTCTGGGA
33479643 CGTTGGCATT
Statistics
Matches: 56, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
39 1 0.02
40 4 0.07
42 23 0.41
43 28 0.50
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.32
Consensus pattern (42 bp):
TTACATGTAAGACCATGTCTGGGATAGATCATCAATATTTGA
Found at i:33483875 original size:18 final size:18
Alignment explanation
Indices: 33483852--33483886 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
33483842 GAGTTAAACG
33483852 AATCGAGTTATTCGAGTT
1 AATCGAGTTATTCGAGTT
*
33483870 AATCGATTTATTCGAGT
1 AATCGAGTTATTCGAGT
33483887 CAACTCAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40
Consensus pattern (18 bp):
AATCGAGTTATTCGAGTT
Found at i:33488485 original size:19 final size:19
Alignment explanation
Indices: 33488444--33488488 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
33488434 TTTTTTATTA
*
33488444 AAGTATGTTCTAGTTAGGC
1 AAGTATGTTCTAGTTACGC
33488463 AAGTATGTTCTAGTTGACG-
1 AAGTATGTTCTAGTT-ACGC
33488482 AAGTATG
1 AAGTATG
33488489 CAAGAGCTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 22 0.92
20 2 0.08
ACGTcount: A:0.29, C:0.09, G:0.27, T:0.36
Consensus pattern (19 bp):
AAGTATGTTCTAGTTACGC
Found at i:33490707 original size:27 final size:27
Alignment explanation
Indices: 33490579--33490708 Score: 154
Period size: 27 Copynumber: 4.9 Consensus size: 27
33490569 TACCAAAGTA
* *
33490579 ACCC-CGATTTACATAATTACCATTTT
1 ACCCTCGATTTACAGAATTACTATTTT
* * **
33490605 ACCCTCAATTTACAGAATTGCCGTTTT
1 ACCCTCGATTTACAGAATTACTATTTT
*
33490632 ACCCTCGATTTATAGAATTACTATTTT
1 ACCCTCGATTTACAGAATTACTATTTT
* *
33490659 ACCCTTGATTTACAGAATTACTGTTTT
1 ACCCTCGATTTACAGAATTACTATTTT
* *
33490686 ACCATCGATTTACAAAATTACTA
1 ACCCTCGATTTACAGAATTACTA
33490709 AAATACCCTT
Statistics
Matches: 87, Mismatches: 16, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
26 4 0.05
27 83 0.95
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.39
Consensus pattern (27 bp):
ACCCTCGATTTACAGAATTACTATTTT
Found at i:33490707 original size:54 final size:54
Alignment explanation
Indices: 33490583--33490734 Score: 178
Period size: 54 Copynumber: 2.8 Consensus size: 54
33490573 AAAGTAACCC
* * ** * *
33490583 CGATTTACATAATTACCATTTTACCCTCAATTTACAGAATTGCCGTTTTACCCT
1 CGATTTACAAAATTACTATTTTACCCTTGATTTACAGAATTACCGTTTTACCAT
* * *
33490637 CGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTGTTTTACCAT
1 CGATTTACAAAATTACTATTTTACCCTTGATTTACAGAATTACCGTTTTACCAT
*** * *
33490691 CGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACC
1 CGATTTACAAAATTACTATTTTACCCTTGATTTACAGAATTACC
33490735 AAATACCCTC
Statistics
Matches: 82, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 82 1.00
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.39
Consensus pattern (54 bp):
CGATTTACAAAATTACTATTTTACCCTTGATTTACAGAATTACCGTTTTACCAT
Found at i:33490755 original size:26 final size:27
Alignment explanation
Indices: 33490685--33490930 Score: 184
Period size: 27 Copynumber: 9.2 Consensus size: 27
33490675 ATTACTGTTT
* ** *
33490685 TACCATCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * **
33490712 TACCCTTGGTTTACAAAATTACC-AAA
1 TACCCTCGATTTGTAAAATTACCAAAA
**
33490738 TACCCTCGATCAGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * * * *
33490765 TACCCT-GGTCTATAAAATTGCTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
*
33490791 TACCC-CTGGTTTGTAAAATTA-CAAAA
1 TACCCTC-GATTTGTAAAATTACCAAAA
*
33490817 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAA
* * *
33490844 TACCACT-GGTTTGTGAAATTACCGAAA
1 TACC-CTCGATTTGTAAAATTACCAAAA
*
33490871 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
**
33490898 TA-CCTCTGATTTACAAAATTA-CAGAAA
1 TACCCTC-GATTTGTAAAATTACCA-AAA
33490925 TACCCT
1 TACCCT
33490931 TGACTTTCTA
Statistics
Matches: 176, Mismatches: 32, Indels: 21
0.77 0.14 0.09
Matches are distributed among these distances:
26 70 0.40
27 102 0.58
28 4 0.02
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.29
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTACCAAAA
Found at i:33490767 original size:53 final size:52
Alignment explanation
Indices: 33490699--33490907 Score: 161
Period size: 53 Copynumber: 3.9 Consensus size: 52
33490689 ATCGATTTAC
* *
33490699 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAATA-CCCTCGATCAGT
1 AAAATTACCAAAATACCC-TGGTTTATAAAATTACCAAATACCCCT-GATCAGT
* * * * **
33490752 AAAATTACCAAAATACCCTGGTCTATAAAATTGCTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCTGGTTTATAAAATTAC-CAAATACCCCTGATCAGT
* * * * **
33490805 AAAATTA-CAAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTGGTTTGT
1 AAAATTACCAAAATA-CCCTGGTTTATAAAATTACC-AAATACCCCTGATCAGT
* * ** * *
33490858 GAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCTCTGAT
1 AAAATTACCAAAATACCCT-GGTTTATAAAATTACC-AAATACCCCTGAT
33490908 TTACAAAATT
Statistics
Matches: 131, Mismatches: 19, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
52 20 0.15
53 74 0.56
54 37 0.28
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (52 bp):
AAAATTACCAAAATACCCTGGTTTATAAAATTACCAAATACCCCTGATCAGT
Found at i:33490790 original size:79 final size:80
Alignment explanation
Indices: 33490699--33490853 Score: 215
Period size: 79 Copynumber: 1.9 Consensus size: 80
33490689 ATCGATTTAC
* *
33490699 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAATACCCTCGA-TCAGTAAAATTACCAA
1 AAAATTACTAAAATACCCCTGGTTTACAAAATTACAAAATACCC-CGAGTCAGTAAAATTACCAA
33490763 AATACC-CTGGTCTAT
65 AATACCACTGGTCTAT
* ** * **
33490778 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTACAAAATACCCCTAGTTTGTAAAATTACCAAA
1 AAAATTACTAAAATACCCCTGGTTTACAAAATTACAAAATACCCCGAGTCAGTAAAATTACCAAA
33490843 ATACCACTGGT
66 ATACCACTGGT
33490854 TTGTGAAATT
Statistics
Matches: 66, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
78 2 0.03
79 59 0.89
80 5 0.08
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.28
Consensus pattern (80 bp):
AAAATTACTAAAATACCCCTGGTTTACAAAATTACAAAATACCCCGAGTCAGTAAAATTACCAAA
ATACCACTGGTCTAT
Found at i:33490980 original size:27 final size:27
Alignment explanation
Indices: 33490694--33490992 Score: 166
Period size: 27 Copynumber: 11.1 Consensus size: 27
33490684 TTACCATCGA
33490694 TTTACAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTACTAAAATACCCTTGG
* *
33490721 TTTACAAAATTAC-CAAATACCC-TCG
1 TTTACAAAATTACTAAAATACCCTTGG
* * * *
33490746 ATCAGTAAAATTACCAAAATACCC-TGG
1 TTTA-CAAAATTACTAAAATACCCTTGG
* * * *
33490773 TCTATAAAATTGCTAAAATACCCCTGG
1 TTTACAAAATTACTAAAATACCCTTGG
** * *
33490800 TTTGTAAAATTAC-AAAATACCCCTAG
1 TTTACAAAATTACTAAAATACCCTTGG
** *
33490826 TTTGTAAAATTACCAAAATACCAC-TGG
1 TTTACAAAATTACTAAAATACC-CTTGG
*** ** ***
33490853 TTTGTGAAATTACCGAAATACCCTCAA
1 TTTACAAAATTACTAAAATACCCTTGG
** * *
33490880 TTTGTAAAATTACCAAAATA-CCTCTGA
1 TTTACAAAATTACTAAAATACCCT-TGG
*
33490907 TTTACAAAATTAC-AGAAATACCCTTGAC
1 TTTACAAAATTACTA-AAATACCCTTG-G
* *
33490935 TTT-CTAAAAAGTA-TAGAAATACCATTGG
1 TTTAC--AAAATTACTA-AAATACCCTTGG
*
33490963 TTTACAAAATTACTGAAATACCCTTGG
1 TTTACAAAATTACTAAAATACCCTTGG
33490990 TTT
1 TTT
33490993 GTAGATTTAC
Statistics
Matches: 222, Mismatches: 35, Indels: 30
0.77 0.12 0.10
Matches are distributed among these distances:
25 4 0.02
26 63 0.28
27 125 0.56
28 11 0.05
29 19 0.09
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
TTTACAAAATTACTAAAATACCCTTGG
Found at i:33491075 original size:27 final size:27
Alignment explanation
Indices: 33491045--33491105 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
33491035 TACACTATTA
33491045 GGTAAAAAGACCGTA-AAGCCCCTGTAG
1 GGTAAAAAGACCGTAGAA-CCCCTGTAG
** * *
33491072 GGTAAAGTGACCGTAGTACCCCTGTAT
1 GGTAAAAAGACCGTAGAACCCCTGTAG
33491099 GGTAAAA
1 GGTAAAA
33491106 TGATGAATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
27 27 0.96
28 1 0.04
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.20
Consensus pattern (27 bp):
GGTAAAAAGACCGTAGAACCCCTGTAG
Found at i:33492004 original size:24 final size:25
Alignment explanation
Indices: 33491918--33492011 Score: 145
Period size: 25 Copynumber: 3.8 Consensus size: 25
33491908 AGGAAGTGCT
* *
33491918 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
33491943 AAAAGGGCTTTGCCCCAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
33491968 AAAAGGGCCTTGCCCCAGTTTATC-
1 AAAAGGGCTTTGCCCCAGTTTACCA
33491992 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
33492012 ATTAAAAGAT
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
24 19 0.30
25 45 0.70
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:33492265 original size:31 final size:31
Alignment explanation
Indices: 33492230--33492370 Score: 246
Period size: 31 Copynumber: 4.5 Consensus size: 31
33492220 CATTTACAGT
33492230 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
33492261 AAAGGCTTCGGCCCAGAGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
33492292 GAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
33492323 TAAGGCTTCGGCCCAGTGATATGAGTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
33492354 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
33492371 AACCGTTAAA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 104 1.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:33492423 original size:93 final size:93
Alignment explanation
Indices: 33492231--33492431 Score: 223
Period size: 93 Copynumber: 2.2 Consensus size: 93
33492221 ATTTACAGTA
* * * *
33492231 AAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTCGGCCCAGAGATATGATTTATGAGAAG
1 AAGGCTTCGGCCCAGTGATATGAGTTATGAAAAGGCTTCGGCCCAGAGATACGATTAACGAGAAG
** *
33492296 GCTTCGGCCCAGTGATATGATTTATGAT
66 GCTTCGGCCCAGTGATATGATAGATAAT
*
33492324 AAGGCTTCGGCCCAGTGATATGAGTTATGAAAAGGCTTCGGCCCAGTA-A-CCG-TTAAACGA-A
1 AAGGCTTCGGCCCAGTGATATGAGTTATGAAAAGGCTTCGGCCCAG-AGATACGATT-AACGAGA
*
33492385 AGGCTTCGGCCCAGT-ATATGCTAAGACTAAAT
64 AGGCTTCGGCCCAGTGATATGAT-AGA-T-AAT
* *
33492417 AGGGCTTTGGCCCAG
1 AAGGCTTCGGCCCAG
33492432 ATTGTACTGA
Statistics
Matches: 92, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
90 6 0.07
91 19 0.21
92 5 0.05
93 61 0.66
94 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.25
Consensus pattern (93 bp):
AAGGCTTCGGCCCAGTGATATGAGTTATGAAAAGGCTTCGGCCCAGAGATACGATTAACGAGAAG
GCTTCGGCCCAGTGATATGATAGATAAT
Found at i:33495639 original size:40 final size:40
Alignment explanation
Indices: 33495595--33495695 Score: 132
Period size: 40 Copynumber: 2.5 Consensus size: 40
33495585 GACAAATTAT
* * *
33495595 CTATATGTGGCACTTAATGTGCGATTC-GACATAGCTTTGG
1 CTATATATGGCACTTAATGTGCCATTCGGA-ATAGCTTCGG
* *
33495635 CTATATATGGCACTTAGTGTGCCATTCGGATTAGCTTCGG
1 CTATATATGGCACTTAATGTGCCATTCGGAATAGCTTCGG
*
33495675 CTATATATTGCACTTAATGTG
1 CTATATATGGCACTTAATGTG
33495696 GAAGACTGTA
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
40 51 0.96
41 2 0.04
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.37
Consensus pattern (40 bp):
CTATATATGGCACTTAATGTGCCATTCGGAATAGCTTCGG
Found at i:33500424 original size:29 final size:29
Alignment explanation
Indices: 33500361--33500428 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
33500351 TAATCAACCG
**
33500361 CGCACACTTAGTGTCATGCACTTTAAACT
1 CGCACACTTAGTACCATGCACTTTAAACT
* **
33500390 CACACACTTAGTACCATGCA-TTTCAAGTT
1 CGCACACTTAGTACCATGCACTTT-AAACT
33500419 CGCACACTTA
1 CGCACACTTA
33500429 CCTATTCCGC
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
28 3 0.09
29 29 0.91
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTACCATGCACTTTAAACT
Found at i:33500540 original size:174 final size:174
Alignment explanation
Indices: 33500250--33500575 Score: 589
Period size: 174 Copynumber: 1.9 Consensus size: 174
33500240 AACTCAAGGT
* * *
33500250 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTATTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
33500315 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGTCATGC
66 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
33500380 ACTTTAAACTCACACACTTAGTACCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTACCATGCATTTCAAGTTCGCAC
33500424 ACTTACCTATTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTATTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
33500489 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
*
33500554 ACTTTAAACTCGCACACTTAGT
131 ACTTTAAACTCACACACTTAGT
33500576 GCTGTACAAT
Statistics
Matches: 145, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 145 1.00
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTATTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTACCATGCATTTCAAGTTCGCAC
Found at i:33500569 original size:29 final size:30
Alignment explanation
Indices: 33500530--33500608 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
33500520 CTTAATAATC
33500530 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
33500560 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
33500589 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
33500609 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:33507432 original size:31 final size:31
Alignment explanation
Indices: 33507394--33507589 Score: 183
Period size: 30 Copynumber: 6.5 Consensus size: 31
33507384 AACTGAAGCT
33507394 ATCCCTTTTCATAATTTTGATGGTCGTCACC
1 ATCCCTTTTCATAATTTTGATGGTCGTCACC
* *
33507425 ATCCCTTTTCAT--TCTTGATGGTCGTCGCC
1 ATCCCTTTTCATAATTTTGATGGTCGTCACC
* *** *
33507454 AT-CCTTTTACATAA-TTTGATAGTCAAAACT
1 ATCCCTTTT-CATAATTTTGATGGTCGTCACC
* * * *
33507484 ATCCCTTTGCATGA-TTTGATAG-C-TGAAGCC
1 ATCCCTTTTCATAATTTTGATGGTCGT-CA-CC
*
33507514 ATCCCTTTTCATAATTTTGATGGTTGTCACC
1 ATCCCTTTTCATAATTTTGATGGTCGTCACC
**
33507545 ATCCCTTTTCATAATTCAG-TGGTCGTCACC
1 ATCCCTTTTCATAATTTTGATGGTCGTCACC
33507575 ATCCCTTTTCATAAT
1 ATCCCTTTTCATAAT
33507590 CGATAGCCGA
Statistics
Matches: 135, Mismatches: 21, Indels: 19
0.77 0.12 0.11
Matches are distributed among these distances:
28 6 0.04
29 23 0.17
30 61 0.45
31 43 0.32
32 1 0.01
33 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.13, T:0.40
Consensus pattern (31 bp):
ATCCCTTTTCATAATTTTGATGGTCGTCACC
Found at i:33507535 original size:120 final size:119
Alignment explanation
Indices: 33507353--33507644 Score: 374
Period size: 120 Copynumber: 2.4 Consensus size: 119
33507343 CCATGATTCA
** *
33507353 ATAGCCAAAGTTATCCCTTTCGTGATTCGATAACTGAAGCTATCCCTTTTCATAATTTTGATGGT
1 ATAGCCAAAACTATCCCTTTCGTGATTCGATAGCTGAAGCTATCCCTTTTCATAATTTTGATGGT
** * * *
33507418 CGTCACCATCCCTTTTCATTCTTGA-TGGTCGTCGCCAT-CCTTTTACATAATTTG
66 CGTCACCATCCCTTTTCATAATTCAGTGGTCGTCACCATCCCTTTT-CATAA-TCG
* * * *
33507472 ATAGTCAAAACTATCCCTTTGCATGATTTGATAGCTGAAGCCATCCCTTTTCATAATTTTGATGG
1 ATAGCCAAAACTATCCCTTT-CGTGATTCGATAGCTGAAGCTATCCCTTTTCATAATTTTGATGG
*
33507537 TTGTCACCATCCCTTTTCATAATTCAGTGGTCGTCACCATCCCTTTTCATAATCG
65 TCGTCACCATCCCTTTTCATAATTCAGTGGTCGTCACCATCCCTTTTCATAATCG
* * * *
33507592 ATAGCCGAAGCTATCTCTTTTCGT-ATTCGATAGCCGAAGCTATCCCTTTTCAT
1 ATAGCCAAAACTATC-CCTTTCGTGATTCGATAGCTGAAGCTATCCCTTTTCAT
33507645 TCGTTGATGA
Statistics
Matches: 148, Mismatches: 21, Indels: 8
0.84 0.12 0.05
Matches are distributed among these distances:
119 43 0.29
120 78 0.53
121 21 0.14
122 6 0.04
ACGTcount: A:0.23, C:0.25, G:0.14, T:0.38
Consensus pattern (119 bp):
ATAGCCAAAACTATCCCTTTCGTGATTCGATAGCTGAAGCTATCCCTTTTCATAATTTTGATGGT
CGTCACCATCCCTTTTCATAATTCAGTGGTCGTCACCATCCCTTTTCATAATCG
Found at i:33507621 original size:29 final size:29
Alignment explanation
Indices: 33507575--33507644 Score: 113
Period size: 29 Copynumber: 2.4 Consensus size: 29
33507565 GGTCGTCACC
33507575 ATCCCTTTTCATAATCGATAGCCGAAGCT
1 ATCCCTTTTCATAATCGATAGCCGAAGCT
* * *
33507604 ATCTCTTTTCGTATTCGATAGCCGAAGCT
1 ATCCCTTTTCATAATCGATAGCCGAAGCT
33507633 ATCCCTTTTCAT
1 ATCCCTTTTCAT
33507645 TCGTTGATGA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.23, C:0.27, G:0.13, T:0.37
Consensus pattern (29 bp):
ATCCCTTTTCATAATCGATAGCCGAAGCT
Found at i:33513601 original size:74 final size:74
Alignment explanation
Indices: 33513471--33513614 Score: 254
Period size: 74 Copynumber: 1.9 Consensus size: 74
33513461 TGTGGCCAAG
33513471 CCATGTGACTCACTCGACCAAGATACACGTCCGTGTCACAGGCTGTATGGGCATTCGAAGTAGGG
1 CCATGTGACTCACTCGACCAAGATACACGTCCGTGTCACAGGCTGTATGGGCATTCGAAGTAGGG
33513536 ACACACGAA
66 ACACACGAA
* *
33513545 CCATGTGACTCACTCGACCAAGATACACGTCCGTGTCACAGGCCT-TGTGGGTATTCGAAGTAGG
1 CCATGTGACTCACTCGACCAAGATACACGTCCGTGTCACAGG-CTGTATGGGCATTCGAAGTAGG
33513609 GACACA
65 GACACA
33513615 TGACCGTGTC
Statistics
Matches: 67, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
74 65 0.97
75 2 0.03
ACGTcount: A:0.27, C:0.27, G:0.26, T:0.20
Consensus pattern (74 bp):
CCATGTGACTCACTCGACCAAGATACACGTCCGTGTCACAGGCTGTATGGGCATTCGAAGTAGGG
ACACACGAA
Found at i:33514871 original size:30 final size:30
Alignment explanation
Indices: 33514837--33514895 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
33514827 TTCTTTTCCA
* *
33514837 TGATTTGATAGCCAAAGCTATCCTTTTTCG
1 TGATTCGATAGCCAAAGCTATCCCTTTTCG
***
33514867 TGATTCGATAGTTGAAGCTATCCCTTTTC
1 TGATTCGATAGCCAAAGCTATCCCTTTTC
33514896 ATAAATTTGA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.22, C:0.20, G:0.17, T:0.41
Consensus pattern (30 bp):
TGATTCGATAGCCAAAGCTATCCCTTTTCG
Found at i:33514921 original size:31 final size:30
Alignment explanation
Indices: 33514886--33515051 Score: 128
Period size: 30 Copynumber: 5.5 Consensus size: 30
33514876 AGTTGAAGCT
*
33514886 ATCCCTTTTCATAAATTTGATGGTCGTCACC
1 ATCCCTTTTCAT-AATTTGATAGTCGTCACC
*
33514917 ATCCCTTTTCAT--TGTTGATGGTCGTCACC
1 ATCCCTTTTCATAAT-TTGATAGTCGTCACC
* * * *
33514946 ATCCCTCTACATAATTTGATAG-C-TGAAGCT
1 ATCCCTTTTCATAATTTGATAGTCGT-CA-CC
* * *
33514976 ATCCCTTTGCATGATTTGATAG-C-TAAAGCC
1 ATCCCTTTTCATAATTTGATAGTCGT-CA-CC
* *
33515006 ATCCATTTTCATAATTTTGACAGTCGTCACC
1 ATCCCTTTTCATAA-TTTGATAGTCGTCACC
33515037 ATCCCTTTTCATAAT
1 ATCCCTTTTCATAAT
33515052 CGATTGCCGA
Statistics
Matches: 111, Mismatches: 16, Indels: 17
0.77 0.11 0.12
Matches are distributed among these distances:
28 2 0.02
29 27 0.24
30 44 0.40
31 35 0.32
32 2 0.02
33 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.38
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGATAGTCGTCACC
Found at i:33514980 original size:90 final size:89
Alignment explanation
Indices: 33514871--33515077 Score: 222
Period size: 90 Copynumber: 2.3 Consensus size: 89
33514861 TTTTCGTGAT
* * * *
33514871 TCGATAGTTGAAGCTATCCCTTTTCATAAATTTGATGGTCGT-CA-CCATCCCTTTTCAT-TGTT
1 TCGATAGCTGAAGCTATCCCTTTTCAT-AATTTGATAG-C-TAAAGCCATCCATTTTCATATGTT
**
33514933 GATGGTCGTCACCATCCCTCTACATAA
63 GACAGTCGTCACCATCCCTCTACATAA
* * * *
33514960 TTTGATAGCTGAAGCTATCCCTTTGCATGATTTGATAGCTAAAGCCATCCATTTTCATAATTTTG
1 -TCGATAGCTGAAGCTATCCCTTTTCATAATTTGATAGCTAAAGCCATCCATTTTCAT-ATGTTG
* *
33515025 ACAGTCGTCACCATCCCTTTTCATAA
64 ACAGTCGTCACCATCCCTCTACATAA
* *
33515051 TCGATTGCCGAAGCTATCCCTTTTCAT
1 TCGATAGCTGAAGCTATCCCTTTTCAT
33515078 TCGTTGATGA
Statistics
Matches: 97, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
87 1 0.01
88 2 0.02
89 21 0.22
90 47 0.48
91 26 0.27
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (89 bp):
TCGATAGCTGAAGCTATCCCTTTTCATAATTTGATAGCTAAAGCCATCCATTTTCATATGTTGAC
AGTCGTCACCATCCCTCTACATAA
Found at i:33515071 original size:120 final size:120
Alignment explanation
Indices: 33514839--33515060 Score: 273
Period size: 120 Copynumber: 1.9 Consensus size: 120
33514829 CTTTTCCATG
* * * * * * *
33514839 ATTTGATAGCCAAAGCTATCCTTTTTCGTGATTCGATAGTTGAAGCTATCCCTTTTCATAAATTT
1 ATTTGATAGCCAAAGCTATCCCTTTGCATGATTCGATAGCTAAAGCCATCCATTTTCATAAATTT
** ** * * *
33514904 GATGGTCGTCACCATCCCTTTTCATTGTTGATGGTCGTCACCATCCCTCTACATA
66 GACAGTCGTCACCATCCCTTTTCATAATCGATGGCCGTAACCATCCCTCTACATA
** * *
33514959 ATTTGATAGCTGAAGCTATCCCTTTGCATGATTTGATAGCTAAAGCCATCCATTTTCATAATTTT
1 ATTTGATAGCCAAAGCTATCCCTTTGCATGATTCGATAGCTAAAGCCATCCATTTTCATAAATTT
*
33515024 GACAGTCGTCACCATCCCTTTTCATAATCGATTGCCG
66 GACAGTCGTCACCATCCCTTTTCATAATCGATGGCCG
33515061 AAGCTATCCC
Statistics
Matches: 84, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
120 84 1.00
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (120 bp):
ATTTGATAGCCAAAGCTATCCCTTTGCATGATTCGATAGCTAAAGCCATCCATTTTCATAAATTT
GACAGTCGTCACCATCCCTTTTCATAATCGATGGCCGTAACCATCCCTCTACATA
Found at i:33517123 original size:21 final size:21
Alignment explanation
Indices: 33517075--33517123 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
33517065 GAAGACAACC
*
33517075 CTCCTTTAACTTAACCTAAGT
1 CTCCTTTAACTTAACCCAAGT
* * *
33517096 ATACTTTAACTTCACCCAAGT
1 CTCCTTTAACTTAACCCAAGT
33517117 CTCCTTT
1 CTCCTTT
33517124 GGAACTAGGC
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.27, C:0.31, G:0.04, T:0.39
Consensus pattern (21 bp):
CTCCTTTAACTTAACCCAAGT
Found at i:33523922 original size:28 final size:27
Alignment explanation
Indices: 33523889--33523987 Score: 119
Period size: 28 Copynumber: 3.6 Consensus size: 27
33523879 TAATGAGATT
33523889 AGCACTAAGTGTGCGAGTTTAATTGAA
1 AGCACTAAGTGTGCGAGTTTAATTGAA
* **
33523916 ATGCACTAAGTGTGCGAGTATAAGGGTAA
1 A-GCACTAAGTGTGCGAGTTTAATTG-AA
*
33523945 AGCACTAAGTGTGCGAGTTTGATT-ATTA
1 AGCACTAAGTGTGCGAGTTTAATTGA--A
33523973 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
33523988 TACTTATTAA
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
26 1 0.02
27 1 0.02
28 56 0.92
29 3 0.05
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.28
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTTAATTGAA
Found at i:33524989 original size:47 final size:47
Alignment explanation
Indices: 33524920--33525203 Score: 403
Period size: 47 Copynumber: 6.0 Consensus size: 47
33524910 TTGTGTTATA
*
33524920 AATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGCTGTCC
1 AATTTTAAGTATATTGATGCTGTCCATTTTAATGTATAATGCTGTCC
33524967 AATTTTAAGTATATTGATGCTGTCCATTTTAATGTATAATGCTGTCC
1 AATTTTAAGTATATTGATGCTGTCCATTTTAATGTATAATGCTGTCC
*
33525014 AATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGCTGTCC
1 AATTTTAAGTATATTGATGCTGTCCATTTTAATGTATAATGCTGTCC
33525061 AATTTTAAGTATATTGATGCTGTCCATTTTAATGTATAATGCTGTCC
1 AATTTTAAGTATATTGATGCTGTCCATTTTAATGTATAATGCTGTCC
* * * * * *
33525108 AATTTTGAGTATATTTAAGCTGTCTAATTTGATGTATAATGCTG-CC
1 AATTTTAAGTATATTGATGCTGTCCATTTTAATGTATAATGCTGTCC
* * * * *
33525154 CA-TTTAGAGCATATT-ATTGCTGTCCAATTTGATGAATAATTGCTGTCC
1 AATTTTA-AGTATATTGA-TGCTGTCCATTTTAATGTATAA-TGCTGTCC
33525202 AA
1 AA
33525204 AACAGGGTTG
Statistics
Matches: 217, Mismatches: 16, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
45 4 0.02
46 29 0.13
47 181 0.83
48 3 0.01
ACGTcount: A:0.27, C:0.13, G:0.16, T:0.43
Consensus pattern (47 bp):
AATTTTAAGTATATTGATGCTGTCCATTTTAATGTATAATGCTGTCC
Found at i:33530154 original size:16 final size:16
Alignment explanation
Indices: 33530130--33530164 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
33530120 TTCGGGATTC
*
33530130 TATTAAAATTTTTGAA
1 TATTAAAATATTTGAA
*
33530146 TATTTAAATATTTGAA
1 TATTAAAATATTTGAA
33530162 TAT
1 TAT
33530165 CAACTATAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (16 bp):
TATTAAAATATTTGAA
Found at i:33532505 original size:25 final size:25
Alignment explanation
Indices: 33532477--33532525 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
33532467 AGCTCACACA
* * *
33532477 AAGTGTGCTCACATGAGCTTTGAAT
1 AAGTATGCTCACACGAGCTATGAAT
33532502 AAGTATGCTCACACGAGCTATGAA
1 AAGTATGCTCACACGAGCTATGAA
33532526 AATGGGCTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (25 bp):
AAGTATGCTCACACGAGCTATGAAT
Found at i:33540257 original size:3 final size:3
Alignment explanation
Indices: 33540249--33540280 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
33540239 GTTTAAGCTA
*
33540249 ATT ATT ATT ACT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
33540281 ATAAAACCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:33541081 original size:3 final size:3
Alignment explanation
Indices: 33541073--33541142 Score: 140
Period size: 3 Copynumber: 23.3 Consensus size: 3
33541063 GTACAAAGAT
33541073 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
33541121 TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA T
33541143 TACTCCACCC
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 67 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:33548041 original size:49 final size:49
Alignment explanation
Indices: 33547969--33548129 Score: 216
Period size: 49 Copynumber: 3.3 Consensus size: 49
33547959 GGCACACCAG
* * * *
33547969 AGCTCTTATGAGCTTATCGATTTCAGCTCATGAAAGCTTATCGATTCTA
1 AGCTCGTATGAGCTTACCGATTTCAGCTCATGAGAGCTTACCGATTCTA
* *
33548018 AGCTCGTATGAGCTTACCGATTTCAGCTCGTGAGAGCTTACCGATTCTC
1 AGCTCGTATGAGCTTACCGATTTCAGCTCATGAGAGCTTACCGATTCTA
* * *
33548067 AGCTCGTATGCGCTTACTGATTTCTAGCTCATGAGAGCATACCGATTC-A
1 AGCTCGTATGAGCTTACCGATTTC-AGCTCATGAGAGCTTACCGATTCTA
33548116 TAGCTCGTATGAGC
1 -AGCTCGTATGAGC
33548130 ATACATGTAC
Statistics
Matches: 98, Mismatches: 12, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
49 65 0.66
50 33 0.34
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (49 bp):
AGCTCGTATGAGCTTACCGATTTCAGCTCATGAGAGCTTACCGATTCTA
Found at i:33548133 original size:25 final size:25
Alignment explanation
Indices: 33547969--33548129 Score: 140
Period size: 25 Copynumber: 6.5 Consensus size: 25
33547959 GGCACACCAG
* *
33547969 AGCTCTTATGAGCTTATCGATT-TC
1 AGCTCGTATGAGCTTACCGATTCTC
* *
33547993 AGCTC--ATGAAAGCTTATCGATTCTA
1 AGCTCGTATG--AGCTTACCGATTCTC
33548018 AGCTCGTATGAGCTTACCGATT-TC
1 AGCTCGTATGAGCTTACCGATTCTC
33548042 AGCTCGTGA-GAGCTTACCGATTCTC
1 AGCTCGT-ATGAGCTTACCGATTCTC
* *
33548067 AGCTCGTATGCGCTTACTGATT-TC
1 AGCTCGTATGAGCTTACCGATTCTC
* *
33548091 TAGCTCATGA-GAGCATACCGATTCAT-
1 -AGCTCGT-ATGAGCTTACCGATTC-TC
33548117 AGCTCGTATGAGC
1 AGCTCGTATGAGC
33548130 ATACATGTAC
Statistics
Matches: 114, Mismatches: 10, Indels: 25
0.77 0.07 0.17
Matches are distributed among these distances:
22 3 0.03
24 42 0.37
25 64 0.56
26 1 0.01
27 4 0.04
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (25 bp):
AGCTCGTATGAGCTTACCGATTCTC
Found at i:33551010 original size:27 final size:27
Alignment explanation
Indices: 33550956--33551010 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
33550946 AATATATAAT
*
33550956 AATTATAAAATGATTAAATTGTACTTA
1 AATTATAAAATGATTAAATTGTAATTA
* *
33550983 AATTATTAAAATG-TTGAATTTTAATTA
1 AATTA-TAAAATGATTAAATTGTAATTA
33551010 A
1 A
33551011 TTTTATGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 17 0.71
28 7 0.29
ACGTcount: A:0.47, C:0.02, G:0.07, T:0.44
Consensus pattern (27 bp):
AATTATAAAATGATTAAATTGTAATTA
Found at i:33551191 original size:16 final size:17
Alignment explanation
Indices: 33551170--33551212 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
33551160 AATTATGAAT
33551170 ATTAATTTATAA-TATA
1 ATTAATTTATAATTATA
*
33551186 ATTAATTT-TAATTTTA
1 ATTAATTTATAATTATA
33551202 ATTCAATTTAT
1 ATT-AATTTAT
33551213 TTTGGGTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
15 3 0.13
16 14 0.61
17 5 0.22
18 1 0.04
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTAATTTATAATTATA
Found at i:33559838 original size:59 final size:59
Alignment explanation
Indices: 33559746--33559866 Score: 208
Period size: 59 Copynumber: 2.1 Consensus size: 59
33559736 AACGAGTTAT
*
33559746 AAAGAACTTCTATTTTATTAAATGAAACAATATAAAAATAA-TTTGTACAAAAATATTCA
1 AAAGAAATTCTATTTTATTAAATGAAACAATATAAAAATAACTTT-TACAAAAATATTCA
*
33559805 AAAGAAATTTTATTTTATTAAATGAAACAATATAAAAATAACTTTTACAAAAATATTCA
1 AAAGAAATTCTATTTTATTAAATGAAACAATATAAAAATAACTTTTACAAAAATATTCA
33559864 AAA
1 AAA
33559867 ATAAATCAAT
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
59 56 0.95
60 3 0.05
ACGTcount: A:0.55, C:0.07, G:0.04, T:0.34
Consensus pattern (59 bp):
AAAGAAATTCTATTTTATTAAATGAAACAATATAAAAATAACTTTTACAAAAATATTCA
Found at i:33561816 original size:30 final size:31
Alignment explanation
Indices: 33561782--33561844 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 31
33561772 TAATAAATTT
*
33561782 ATAAAAATATTAATTAA-ATTAAAAAATGAA
1 ATAAAAATATTAAATAATATTAAAAAATGAA
33561812 ATAAAAATATTAAATAATATTAAAAAATGAA
1 ATAAAAATATTAAATAATATTAAAAAATGAA
33561843 AT
1 AT
33561845 TAACCCTTAC
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 16 0.52
31 15 0.48
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (31 bp):
ATAAAAATATTAAATAATATTAAAAAATGAA
Found at i:33564200 original size:26 final size:24
Alignment explanation
Indices: 33564171--33564226 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 24
33564161 AATAAGATTT
33564171 TAATATCTACAAATATAATTAATAAA
1 TAATATCTACAAATATAA-TAA-AAA
* *
33564197 TAATATCTATAATTATAATAAAAA
1 TAATATCTACAAATATAATAAAAA
33564221 TAATAT
1 TAATAT
33564227 TTTAAATACA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 9 0.32
25 3 0.11
26 16 0.57
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (24 bp):
TAATATCTACAAATATAATAAAAA
Found at i:33564308 original size:27 final size:27
Alignment explanation
Indices: 33564288--33564339 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
33564278 ATTTAATATT
*
33564288 AAAGAATAATATTTTCTATTTCTATAA
1 AAAGAATAATATTTTCTATTTATATAA
* *
33564315 AAAGAATAATATTTTATTTTTATAT
1 AAAGAATAATATTTTCTATTTATAT
33564340 TTTCTGAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.48
Consensus pattern (27 bp):
AAAGAATAATATTTTCTATTTATATAA
Found at i:33565034 original size:31 final size:31
Alignment explanation
Indices: 33564979--33565040 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
33564969 GTAACGGTTA
* *
33564979 ATTTTATTTTTTAATATTATTTAATATTTTT
1 ATTTCATTTTTTAATATTAATTAATATTTTT
33565010 ATTTCATTTTTGTAAT-TTAATTAATATTTTT
1 ATTTCATTTTT-TAATATTAATTAATATTTTT
33565041 TTATAATTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 24 0.86
32 4 0.14
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.68
Consensus pattern (31 bp):
ATTTCATTTTTTAATATTAATTAATATTTTT
Found at i:33567018 original size:59 final size:59
Alignment explanation
Indices: 33566926--33567219 Score: 491
Period size: 59 Copynumber: 5.0 Consensus size: 59
33566916 ATTGATTTAT
*
33566926 TTTTGAATATTTTTGTACAAATTATTTTTATATTGTTTCATTTAATAAAATAGAAGTTC
1 TTTTGAATATTTTTGTACAATTTATTTTTATATTGTTTCATTTAATAAAATAGAAGTTC
*
33566985 TTTTGAATATTTTTGTACAAATTATTTTTATATTGTTTCATTTAATAAAATAGAAGTTC
1 TTTTGAATATTTTTGTACAATTTATTTTTATATTGTTTCATTTAATAAAATAGAAGTTC
* *
33567044 TTTTAAATATTTTTGTGCAATTTATTTTTATATTGTTTCATTTAATAAAATAGAAGTTC
1 TTTTGAATATTTTTGTACAATTTATTTTTATATTGTTTCATTTAATAAAATAGAAGTTC
* *
33567103 TTTTGAATATGTTTGTACAATTTATTTTTATATTGTTTCGTTTAATAAAATA-ATAGTTC
1 TTTTGAATATTTTTGTACAATTTATTTTTATATTGTTTCATTTAATAAAATAGA-AGTTC
* * *
33567162 TTTTGAATATGTTTGTACAATTTATTTTTATATTGTTTCATTTAATAAATTAGGAGTT
1 TTTTGAATATTTTTGTACAATTTATTTTTATATTGTTTCATTTAATAAAATAGAAGTT
33567220 ATTTCGATGT
Statistics
Matches: 223, Mismatches: 10, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
58 1 0.00
59 222 1.00
ACGTcount: A:0.32, C:0.05, G:0.10, T:0.54
Consensus pattern (59 bp):
TTTTGAATATTTTTGTACAATTTATTTTTATATTGTTTCATTTAATAAAATAGAAGTTC
Found at i:33570705 original size:33 final size:34
Alignment explanation
Indices: 33570662--33570737 Score: 109
Period size: 34 Copynumber: 2.3 Consensus size: 34
33570652 TTTAAACCCT
*
33570662 AAACCCTAATTTAT-TTTTTCTTAAACCCTAAAC
1 AAACCTTAATTTATTTTTTTCTTAAACCCTAAAC
**
33570695 AAACCTTAATTTATTTTTTTCTTAAACTTTAAAC
1 AAACCTTAATTTATTTTTTTCTTAAACCCTAAAC
*
33570729 TAACCTTAA
1 AAACCTTAA
33570738 CCCTAAACCT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
33 13 0.34
34 25 0.66
ACGTcount: A:0.37, C:0.20, G:0.00, T:0.43
Consensus pattern (34 bp):
AAACCTTAATTTATTTTTTTCTTAAACCCTAAAC
Found at i:33572894 original size:23 final size:23
Alignment explanation
Indices: 33572868--33572949 Score: 58
Period size: 25 Copynumber: 3.4 Consensus size: 23
33572858 ATACAGTGAG
33572868 CAATAGAAATTGTCTGCTGTTTT
1 CAATAGAAATTGTCTGCTGTTTT
* * * * *
33572891 CAATTCAGACAGTTTTTTGATATTGTT
1 CAA-T-AGA-AATTGTCTGCTGTT-TT
*
33572918 GCAATGGAAATTGTCTGCTGTTTT
1 -CAATAGAAATTGTCTGCTGTTTT
33572942 CAAT-GAAA
1 CAATAGAAA
33572950 CTGGAAATTG
Statistics
Matches: 43, Mismatches: 11, Indels: 11
0.66 0.17 0.17
Matches are distributed among these distances:
22 4 0.09
23 7 0.16
24 3 0.07
25 12 0.28
26 11 0.26
27 3 0.07
28 3 0.07
ACGTcount: A:0.28, C:0.12, G:0.18, T:0.41
Consensus pattern (23 bp):
CAATAGAAATTGTCTGCTGTTTT
Found at i:33573706 original size:13 final size:13
Alignment explanation
Indices: 33573688--33573712 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33573678 TTTATTAGTG
33573688 AAAGAGTACATAT
1 AAAGAGTACATAT
33573701 AAAGAGTACATA
1 AAAGAGTACATA
33573713 CAAATTTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.16, T:0.20
Consensus pattern (13 bp):
AAAGAGTACATAT
Found at i:33574505 original size:6 final size:6
Alignment explanation
Indices: 33574494--33574523 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
33574484 TTATACGAAA
33574494 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
33574524 GTTCAAACTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
TTAAAT
Found at i:33577882 original size:90 final size:91
Alignment explanation
Indices: 33577623--33577919 Score: 533
Period size: 91 Copynumber: 3.3 Consensus size: 91
33577613 ATGATTTTAG
* *
33577623 TAAATTCATATAAGAACATTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
33577688 TTTAATATTAATTATTTTAAATTATA
66 TTTAATATTAATTATTTTAAATTATA
33577714 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
33577779 TTTAATATTAATTATTTTAAATTATA
66 TTTAATATTAATTATTTTAAATTATA
**
33577805 TAAATTCATATAAG-AAATTTATTATCAAGAATTTTATGAAATTATATATTTTTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
*
33577869 TTTAATAATAATTATTTTAAATTATA
66 TTTAATATTAATTATTTTAAATTATA
*
33577895 CAAATTCATATAAGAAAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
33577920 GTTATAATTA
Statistics
Matches: 199, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
90 86 0.43
91 113 0.57
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TTTAATATTAATTATTTTAAATTATA
Found at i:33577927 original size:47 final size:46
Alignment explanation
Indices: 33577623--33577953 Score: 205
Period size: 44 Copynumber: 7.3 Consensus size: 46
33577613 ATGATTTTAG
* * *
33577623 TAAATTCATATAAGAACATTTATTATTAAGAATT-TTATGAAATTATA
1 TAAATTCATATAAGAAAATTTATTA-TAATAATTATT-TTAAATTATA
** *
33577670 T--A-TCAT-T-ATTAAATTATATTTAATATTAATTATTTTAAATTATA
1 TAAATTCATATAAGAAAATT-TA-TT-ATAATAATTATTTTAAATTATA
* *
33577714 TAAATTCATATAAGAAAATTTATTATCAAGAATT-TTATGAAATTATA
1 TAAATTCATATAAGAAAATTTATTAT-AATAATTATT-TTAAATTATA
** *
33577761 T--A-TCAT-T-ATTAAATTATATTTAATATTAATTATTTTAAATTATA
1 TAAATTCATATAAGAAAATT-TA-TT-ATAATAATTATTTTAAATTATA
* *
33577805 TAAATTCATATAAG-AAATTTATTATCAAGAATT-TTATGAAATTATA
1 TAAATTCATATAAGAAAATTTATTAT-AATAATTATT-TTAAATTATA
** * *
33577851 TATTTTTAT-TAA-ATTATATTTA--ATAATAATTATTTTAAATTATA
1 TAAATTCATATAAGA--AAATTTATTATAATAATTATTTTAAATTATA
* * *
33577895 CAAATTCATATAAGAAAATTTATTAGTTATAATTATTTTAAATTTTA
1 TAAATTCATATAAGAAAATTTATTA-TAATAATTATTTTAAATTATA
33577942 TTAAA-TCATATA
1 -TAAATTCATATA
33577954 TTTTAATTAA
Statistics
Matches: 218, Mismatches: 34, Indels: 64
0.69 0.11 0.20
Matches are distributed among these distances:
42 11 0.05
43 6 0.03
44 69 0.32
45 23 0.11
46 30 0.14
47 60 0.28
48 12 0.06
49 7 0.03
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (46 bp):
TAAATTCATATAAGAAAATTTATTATAATAATTATTTTAAATTATA
Found at i:33578011 original size:59 final size:58
Alignment explanation
Indices: 33577946--33578134 Score: 163
Period size: 59 Copynumber: 3.2 Consensus size: 58
33577936 ATTTTATTAA
33577946 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTT-AAATTATATTTTATAGT
* * ** * *
33578005 ATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTA-TT-AA-GA-ATTTTATTA-
1 ATCATATATT-TTA-ATTA--AAA-T-ATAT-TTAATATTAATTATTTAAATTATATTTTA-TAG
*
33578065 A
58 T
* * *
33578066 ATTATATTTTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAATTATATTTTATAGT
33578125 ATCATATATT
1 ATCATATATT
33578135 ATGATTTGAG
Statistics
Matches: 97, Mismatches: 19, Indels: 28
0.67 0.13 0.19
Matches are distributed among these distances:
54 9 0.09
55 4 0.04
56 3 0.03
57 5 0.05
58 3 0.03
59 27 0.28
60 4 0.04
61 17 0.18
62 3 0.03
63 5 0.05
64 1 0.01
65 6 0.06
66 10 0.10
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.51
Consensus pattern (58 bp):
ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTAAATTATATTTTATAGT
Found at i:33578065 original size:120 final size:120
Alignment explanation
Indices: 33577935--33578230 Score: 522
Period size: 120 Copynumber: 2.5 Consensus size: 120
33577925 AATTATTTTA
* *
33577935 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATATTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTT
* *
33577999 TATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGAATATTAAG
*
33578055 AATTTTATTAAATTATATTTTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
33578120 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGAATATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGAATATTAAG
*
33578175 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAA
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
33578231 ATATGATTAA
Statistics
Matches: 168, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
120 166 0.99
121 2 0.01
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGAATATTAAG
Found at i:33578077 original size:17 final size:18
Alignment explanation
Indices: 33578057--33578092 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
33578047 TTATTAAGAA
*
33578057 TTTT-ATTAAATTATATT
1 TTTTAATTAAAATATATT
33578074 TTTTAATTAAAATATATT
1 TTTTAATTAAAATATATT
33578092 T
1 T
33578093 AATAATAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TTTTAATTAAAATATATT
Found at i:33578215 original size:15 final size:15
Alignment explanation
Indices: 33578180--33578221 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
33578170 TTAAGAATTT
*
33578180 TATTAAATTAT-ATA
1 TATTTAATTATAATA
33578194 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
33578208 TATTTAATAATAAT
1 TATTTAATTATAAT
33578222 TATGTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:33578557 original size:18 final size:18
Alignment explanation
Indices: 33578530--33578571 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
33578520 ATTGTCTGTT
* *
33578530 TTTTTCTTTTTGGTTTTA
1 TTTTTATTTTAGGTTTTA
*
33578548 TTTTTATTTTAGTTTTTA
1 TTTTTATTTTAGGTTTTA
33578566 TTTTTA
1 TTTTTA
33578572 AAAGTTATGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.12, C:0.02, G:0.07, T:0.79
Consensus pattern (18 bp):
TTTTTATTTTAGGTTTTA
Found at i:33584017 original size:25 final size:25
Alignment explanation
Indices: 33583989--33584089 Score: 98
Period size: 25 Copynumber: 4.0 Consensus size: 25
33583979 TAGCTATGTT
* *
33583989 CCGACCCACAGCTTGTATGAGCATA
1 CCGATCCACAGCTCGTATGAGCATA
* *
33584014 CCGATTCATAGCTCGTGA-GAGCATA
1 CCGATCCACAGCTCGT-ATGAGCATA
* *
33584039 CCGATCTACAACTCG-AGTGAGCATA
1 CCGATCCACAGCTCGTA-TGAGCATA
* *
33584064 CCAATTCACAGCTCGTATGAGCATA
1 CCGATCCACAGCTCGTATGAGCATA
33584089 C
1 C
33584090 ATGTACATGA
Statistics
Matches: 60, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
23 1 0.02
25 57 0.95
26 2 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (25 bp):
CCGATCCACAGCTCGTATGAGCATA
Found at i:33591781 original size:25 final size:25
Alignment explanation
Indices: 33591750--33591819 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
33591740 CGTTTCGACC
33591750 CACAGCTCGTGTGAGCATACCGA-T
1 CACAGCTCGTGTGAGCATACCGATT
* *
33591774 CTACAGCTCGAGTGAGCAAACCGATT
1 C-ACAGCTCGTGTGAGCATACCGATT
* *
33591800 CACAGCTTGTATGAGCATAC
1 CACAGCTCGTGTGAGCATAC
33591820 ATGTACATGA
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
24 1 0.03
25 35 0.92
26 2 0.05
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (25 bp):
CACAGCTCGTGTGAGCATACCGATT
Found at i:33594418 original size:16 final size:17
Alignment explanation
Indices: 33594394--33594429 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
33594384 AACCATAATT
*
33594394 TTTTTAATTT-ATTTAA
1 TTTTGAATTTAATTTAA
33594410 TTTTGAATTTAATTTAA
1 TTTTGAATTTAATTTAA
33594427 TTT
1 TTT
33594430 ATGTTAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (17 bp):
TTTTGAATTTAATTTAA
Found at i:33594463 original size:83 final size:83
Alignment explanation
Indices: 33594360--33594527 Score: 318
Period size: 83 Copynumber: 2.0 Consensus size: 83
33594350 TAATGACATT
*
33594360 AAACAAAAGCGTTTTTTGGGAGGCAACCATAATTTTTTTAATTTATTTAATTTTGAATTTAATTT
1 AAACAAAAGCGCTTTTTGGGAGGCAACCATAATTTTTTTAATTTATTTAATTTTGAATTTAATTT
33594425 AATTTATGTTAAAAATAA
66 AATTTATGTTAAAAATAA
*
33594443 AAACAAAAGCGCTTTTTGGGAGGCAACCATAATTTTTTTAATTTATTTAATTTTGAATTTGATTT
1 AAACAAAAGCGCTTTTTGGGAGGCAACCATAATTTTTTTAATTTATTTAATTTTGAATTTAATTT
33594508 AATTTATGTTAAAAATAA
66 AATTTATGTTAAAAATAA
33594526 AA
1 AA
33594528 GAATAATAAT
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
83 83 1.00
ACGTcount: A:0.39, C:0.07, G:0.11, T:0.43
Consensus pattern (83 bp):
AAACAAAAGCGCTTTTTGGGAGGCAACCATAATTTTTTTAATTTATTTAATTTTGAATTTAATTT
AATTTATGTTAAAAATAA
Found at i:33594501 original size:16 final size:17
Alignment explanation
Indices: 33594477--33594512 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
33594467 AACCATAATT
*
33594477 TTTTTAATTT-ATTTAA
1 TTTTGAATTTGATTTAA
33594493 TTTTGAATTTGATTTAA
1 TTTTGAATTTGATTTAA
33594510 TTT
1 TTT
33594513 ATGTTAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.67
Consensus pattern (17 bp):
TTTTGAATTTGATTTAA
Found at i:33597907 original size:43 final size:43
Alignment explanation
Indices: 33597678--33597893 Score: 278
Period size: 43 Copynumber: 5.0 Consensus size: 43
33597668 ATGCCGTTAT
*
33597678 AGAACATGACCTTTAGC-GACACCTTT-CCCACAAACGCTGCTAA
1 AGAACATGACCTTTAGCAG-C-GCTTTCCCCACAAACGCTGCTAA
* * *
33597721 AGAAC-TGATCTTTAGCGGCGCTTTCCCCACAAACGCGGCTAA
1 AGAACATGACCTTTAGCAGCGCTTTCCCCACAAACGCTGCTAA
*
33597763 AGAACATGACCTTTAGCAGCGCTTTCCCCACAAACG-TCGCTAT
1 AGAACATGACCTTTAGCAGCGCTTTCCCCACAAACGCT-GCTAA
* * **
33597806 AGAACATGACCTTTAGCGGAGCTTTTTCCACAAACGCTGCTAA
1 AGAACATGACCTTTAGCAGCGCTTTCCCCACAAACGCTGCTAA
* *
33597849 AGATCATGACCTTTAGCAGCGCTTTCCCCATAAACGCTGCTAA
1 AGAACATGACCTTTAGCAGCGCTTTCCCCACAAACGCTGCTAA
33597892 AG
1 AG
33597894 GTCATGTTCT
Statistics
Matches: 150, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
41 4 0.03
42 32 0.21
43 113 0.75
44 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (43 bp):
AGAACATGACCTTTAGCAGCGCTTTCCCCACAAACGCTGCTAA
Found at i:33598290 original size:21 final size:21
Alignment explanation
Indices: 33598245--33598290 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
33598235 GCTTTGCTCT
* * **
33598245 GCTTCTCTCGCTGCTGCTTTT
1 GCTTCCCTCGCTGCTGCCTCC
33598266 GCTTCCCTCGCTGCTGCCTCC
1 GCTTCCCTCGCTGCTGCCTCC
33598287 GCTT
1 GCTT
33598291 TAAGTTCTAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.00, C:0.41, G:0.20, T:0.39
Consensus pattern (21 bp):
GCTTCCCTCGCTGCTGCCTCC
Found at i:33603862 original size:9 final size:9
Alignment explanation
Indices: 33603848--33603917 Score: 74
Period size: 9 Copynumber: 8.0 Consensus size: 9
33603838 ATATATTACA
33603848 TAAGTTATG
1 TAAGTTATG
33603857 TAAGTTATG
1 TAAGTTATG
* * *
33603866 ATATGATATA
1 -TAAGTTATG
*
33603876 T-ATTTATG
1 TAAGTTATG
33603884 T-A-TTATG
1 TAAGTTATG
33603891 TAAGTTATG
1 TAAGTTATG
33603900 TAAGTTATG
1 TAAGTTATG
33603909 TAAGTTATG
1 TAAGTTATG
33603918 ATCCAAAGTT
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
7 6 0.12
8 6 0.12
9 33 0.65
10 6 0.12
ACGTcount: A:0.34, C:0.00, G:0.19, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:33603917 original size:34 final size:34
Alignment explanation
Indices: 33603852--33603917 Score: 80
Period size: 34 Copynumber: 1.9 Consensus size: 34
33603842 ATTACATAAG
* *
33603852 TTATGTAAGTTATGATATGATATATATTTATGTA
1 TTATGTAAGTTATGATAAGATATATAGTTATGTA
* *
33603886 TTATGTAAGTTATG-TAAGTTATGTAAGTTATG
1 TTATGTAAGTTATGATAAGATATAT-AGTTATG
33603918 ATCCAAAGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 7 0.26
34 20 0.74
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.48
Consensus pattern (34 bp):
TTATGTAAGTTATGATAAGATATATAGTTATGTA
Found at i:33604021 original size:13 final size:13
Alignment explanation
Indices: 33603999--33604031 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
33603989 AAGTTATGAT
*
33603999 TTTTATCTTTAAA
1 TTTTAACTTTAAA
33604012 TTTTAACTTTAAA
1 TTTTAACTTTAAA
33604025 TTTTAAC
1 TTTTAAC
33604032 CCTTTAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.58
Consensus pattern (13 bp):
TTTTAACTTTAAA
Found at i:33605274 original size:24 final size:24
Alignment explanation
Indices: 33605242--33605294 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
33605232 AGTATTTTAT
33605242 AATATAATATTAATTTTAGATACA
1 AATATAATATTAATTTTAGATACA
*
33605266 AATATAATATTAATTTTAGTTACA
1 AATATAATATTAATTTTAGATACA
33605290 AATAT
1 AATAT
33605295 TATACAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (24 bp):
AATATAATATTAATTTTAGATACA
Found at i:33605742 original size:17 final size:17
Alignment explanation
Indices: 33605722--33605757 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
33605712 AAAGTTCACT
33605722 AGGAAGTAAAGGCTGCA
1 AGGAAGTAAAGGCTGCA
*
33605739 AGGAAGTAGAGGCTGCA
1 AGGAAGTAAAGGCTGCA
33605756 AG
1 AG
33605758 TTCCTGGGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.39, T:0.11
Consensus pattern (17 bp):
AGGAAGTAAAGGCTGCA
Found at i:33606045 original size:33 final size:33
Alignment explanation
Indices: 33605998--33606065 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
33605988 ATATACATAT
*
33605998 ATTCATACCTAACACTAATCTCATTTAACTCGA
1 ATTCATACCGAACACTAATCTCATTTAACTCGA
*
33606031 ATTCATACCGAACACTCATCTCATTTAACTCGA
1 ATTCATACCGAACACTAATCTCATTTAACTCGA
33606064 AT
1 AT
33606066 AACATAGATG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.35, C:0.28, G:0.04, T:0.32
Consensus pattern (33 bp):
ATTCATACCGAACACTAATCTCATTTAACTCGA
Found at i:33606719 original size:15 final size:14
Alignment explanation
Indices: 33606687--33606726 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 14
33606677 AATTGGGAAA
*
33606687 TTGGGGAAAATAAT
1 TTGGGGAAAATAAC
33606701 TTGGGGAAGAATAAC
1 TTGGGGAA-AATAAC
*
33606716 TTGGGGGAAAT
1 TTGGGGAAAAT
33606727 TGGGGGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.38, C:0.03, G:0.35, T:0.25
Consensus pattern (14 bp):
TTGGGGAAAATAAC
Found at i:33606730 original size:25 final size:22
Alignment explanation
Indices: 33606701--33606757 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 22
33606691 GGAAAATAAT
*
33606701 TTGGGGAAGAATAACTTGGGGGAAA
1 TTGGGGAA-AAGAACTT--GGGAAA
*
33606726 TTGGGGGAAAAGAAGTTGGGAAA
1 TT-GGGGAAAAGAACTTGGGAAA
33606749 TTGGGGAAA
1 TTGGGGAAA
33606758 TGAAATCGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
22 7 0.24
23 8 0.28
25 8 0.28
26 6 0.21
ACGTcount: A:0.37, C:0.02, G:0.42, T:0.19
Consensus pattern (22 bp):
TTGGGGAAAAGAACTTGGGAAA
Found at i:33606770 original size:23 final size:23
Alignment explanation
Indices: 33606720--33606773 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
33606710 AATAACTTGG
* *
33606720 GGGAAATTGGGGGAAAAGAAGTT
1 GGGAAATTGGGGGAAAAGAAATC
*
33606743 GGGAAATT-GGGGAAATGAAATC
1 GGGAAATTGGGGGAAAAGAAATC
33606765 GTGGAAATT
1 G-GGAAATT
33606774 TGACTTGGGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 12 0.44
23 15 0.56
ACGTcount: A:0.39, C:0.02, G:0.39, T:0.20
Consensus pattern (23 bp):
GGGAAATTGGGGGAAAAGAAATC
Found at i:33607209 original size:116 final size:115
Alignment explanation
Indices: 33606877--33607259 Score: 403
Period size: 116 Copynumber: 3.3 Consensus size: 115
33606867 CACTAATGCA
* * * *
33606877 ACTAAAAATGTAGCTTAAAATGACAACGTTTTGCAAACTCTTAAAGCATATTTACGGTGTTTTTT
1 ACTAAAAACGCAGC-TAAAATGACAACGTTTTGCAAACTCTTAAACCATATTTGCGGTGTTTTTT
** * ** *
33606942 GTGAAAA--CCACTAACTTATATCCTTTTGCAGCCTTTTAGTAAAAATGCC
65 GTGAAAACGCCACTAACGCATATCCTTTTGCGGTGTTTTAGTAAAAACGCC
* * * ** ** * *
33606991 ATTAAAAAAGCAGATAAAAATGTTAAATTTTTGCAAACTCTTAAACCATATTCGCGGCGTTTTTT
1 ACTAAAAACGCAGCT-AAAATGACAACGTTTTGCAAACTCTTAAACCATATTTGC-G-GTGTTTT
* * * *
33607056 TTATGAAAACGCCACTAACGCATATCCTTTTGTGGTGTTTTAGTGAAAGCGCC
63 TTGTGAAAACGCCACTAACGCATATCCTTTTGCGGTGTTTTAGTAAAAACGCC
* * **
33607109 ACCAAAAGCGCAGCTGAAAATGACATTGTTTTGCAAACTCTTAATA-CATATTTGCGGTGTTTTT
1 ACTAAAAACGCAGCT-AAAATGACAACGTTTTGCAAACTCTTAA-ACCATATTTGCGGTGTTTTT
* * *
33607173 GGTGAAAACGCCACTAACGCATAACCTTTTGCGGTGTTTTAGTCAAAACGCC
64 TGTGAAAACGCCACTAACGCATATCCTTTTGCGGTGTTTTAGTAAAAACGCC
*
33607225 ACTAAAAACACAGCTACAAATGACAACGTTTTGCA
1 ACTAAAAACGCAGCTA-AAATGACAACGTTTTGCA
33607260 TTCTTTTAAT
Statistics
Matches: 216, Mismatches: 46, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
113 1 0.00
114 42 0.19
115 2 0.01
116 95 0.44
117 1 0.00
118 74 0.34
119 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.32
Consensus pattern (115 bp):
ACTAAAAACGCAGCTAAAATGACAACGTTTTGCAAACTCTTAAACCATATTTGCGGTGTTTTTTG
TGAAAACGCCACTAACGCATATCCTTTTGCGGTGTTTTAGTAAAAACGCC
Found at i:33607302 original size:116 final size:115
Alignment explanation
Indices: 33607019--33607286 Score: 279
Period size: 116 Copynumber: 2.3 Consensus size: 115
33607009 AATGTTAAAT
* *** *
33607019 TTTTGCAAACTCTTAA-ACCATATTCGCGGCGTTTTTTTTATGAAAACGCCACTAACGCATATCC
1 TTTTGCAAACTCTTAATA-CATATTCGCCGCG-TTTTGGCA--AAAACGCCACTAACGCATAACC
* * * * * **
33607083 TTTTGTGGTGTTTTAGTGAAAGCGCCACCAAAAGCGCAGCTGAAAATGACATTG
62 TTTTGCGGTGTTTTAGTCAAAACGCCACCAAAAACACAGCTGAAAATGACAACG
* * * **
33607137 TTTTGCAAACTCTTAATACATATTTGCGGTGTTTTTGGTGAAAACGCCACTAACGCATAACCTTT
1 TTTTGCAAACTCTTAATACATATTCGCCGCG-TTTTGGCAAAAACGCCACTAACGCATAACCTTT
*
33607202 TGCGGTGTTTTAGTCAAAACGCCACTAAAAACACAGCT-ACAAATGACAACG
65 TGCGGTGTTTTAGTCAAAACGCCACCAAAAACACAGCTGA-AAATGACAACG
** *
33607253 TTTTGCATTCTTTTAATACATATTCGCCGCGTTT
1 TTTTGCAAACTCTTAATACATATTCGCCGCGTTT
33607287 GGACCAAAAA
Statistics
Matches: 128, Mismatches: 20, Indels: 7
0.83 0.13 0.05
Matches are distributed among these distances:
115 4 0.03
116 90 0.70
118 33 0.26
119 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (115 bp):
TTTTGCAAACTCTTAATACATATTCGCCGCGTTTTGGCAAAAACGCCACTAACGCATAACCTTTT
GCGGTGTTTTAGTCAAAACGCCACCAAAAACACAGCTGAAAATGACAACG
Found at i:33608331 original size:41 final size:40
Alignment explanation
Indices: 33608269--33608425 Score: 215
Period size: 41 Copynumber: 3.9 Consensus size: 40
33608259 AATCATATTC
*
33608269 GCGGCGTTTGGACCCAAAACGCCACTATTGCTCAATGTTTT
1 GCGGCGTTTGGACCAAAAACGCCACTATTGCTCAAT-TTTT
** *
33608310 GTAGTGTTTGGACCAAAAACGCCACTATTGCTCAAATTTTT
1 GCGGCGTTTGGACCAAAAACGCCACTATTGCTC-AATTTTT
* * *
33608351 GCGGCGTTTGGACAAAAAATGCCACTATTGCTCAACATTTT
1 GCGGCGTTTGGACCAAAAACGCCACTATTGCTCAA-TTTTT
*
33608392 ACGGCGTTTGGACCAAAAACGCCACTATTGCTCA
1 GCGGCGTTTGGACCAAAAACGCCACTATTGCTCA
33608426 CCTTTTACGG
Statistics
Matches: 101, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
40 2 0.02
41 96 0.95
42 3 0.03
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (40 bp):
GCGGCGTTTGGACCAAAAACGCCACTATTGCTCAATTTTT
Found at i:33609620 original size:19 final size:19
Alignment explanation
Indices: 33609596--33609633 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
33609586 GTGTCCTTGA
33609596 TCGCTATTAACAGCTTACC
1 TCGCTATTAACAGCTTACC
33609615 TCGCTATTAACAGCTTACC
1 TCGCTATTAACAGCTTACC
33609634 ATTTGGAAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.32, G:0.11, T:0.32
Consensus pattern (19 bp):
TCGCTATTAACAGCTTACC
Found at i:33610254 original size:25 final size:26
Alignment explanation
Indices: 33610217--33610267 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
33610207 GTTGTAAATA
*
33610217 AGAAAAATATCTTTAGA-AATTTTCT
1 AGAAAAATATCTTCAGAGAATTTTCT
* *
33610242 AGAATAATCTCTTCAGAGAATTTTCT
1 AGAAAAATATCTTCAGAGAATTTTCT
33610268 CTCTACAACT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (26 bp):
AGAAAAATATCTTCAGAGAATTTTCT
Found at i:33610488 original size:17 final size:17
Alignment explanation
Indices: 33610466--33610561 Score: 69
Period size: 17 Copynumber: 5.6 Consensus size: 17
33610456 ATTTACAAGA
33610466 TTAATATTAAATTAAAT
1 TTAATATTAAATTAAAT
33610483 TTAATATTAAGA-TAATCACT
1 TTAATATTAA-ATTAA--A-T
33610503 TTAATATTAAATT-AA-
1 TTAATATTAAATTAAAT
* *
33610518 -TAA-ACTACTATTAAGA-
1 TTAATATTA-AATTAA-AT
*
33610534 TAAATATTAAATTAAAT
1 TTAATATTAAATTAAAT
33610551 TTAATATTAAA
1 TTAATATTAAA
33610562 ATATTAAAAT
Statistics
Matches: 62, Mismatches: 6, Indels: 22
0.69 0.07 0.24
Matches are distributed among these distances:
13 3 0.05
14 6 0.10
15 1 0.02
16 2 0.03
17 31 0.50
18 4 0.06
19 3 0.05
20 12 0.19
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (17 bp):
TTAATATTAAATTAAAT
Found at i:33610518 original size:20 final size:18
Alignment explanation
Indices: 33610466--33610577 Score: 79
Period size: 20 Copynumber: 6.1 Consensus size: 18
33610456 ATTTACAAGA
33610466 TTAATATTAAATTAA-AT
1 TTAATATTAAATTAATAT
33610483 TTAATATTAAGA-TAATCACT
1 TTAATATTAA-ATTAAT-A-T
*
33610503 TTAATATTAAATTAATAAA
1 TTAATATTAAATTAAT-AT
* * *
33610522 CTACTATTAAGATAAATA-
1 TTAATATTAA-ATTAATAT
33610540 TTAA-ATTAAATTTAATAT
1 TTAATATTAAA-TTAATAT
* *
33610558 TAAAATATTAAAATAATAT
1 T-TAATATTAAATTAATAT
33610577 T
1 T
33610578 ATTTTTGGAA
Statistics
Matches: 75, Mismatches: 10, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
16 1 0.01
17 23 0.31
18 4 0.05
19 20 0.27
20 27 0.36
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.42
Consensus pattern (18 bp):
TTAATATTAAATTAATAT
Found at i:33614665 original size:24 final size:23
Alignment explanation
Indices: 33614628--33614691 Score: 58
Period size: 24 Copynumber: 2.7 Consensus size: 23
33614618 TATCTCATTA
* *
33614628 AATATCTATTTTATAAATGTTTAT
1 AATATTTATATTATAAATG-TTAT
*
33614652 AATATTTATATTATGTAATGTTAT
1 AATATTTATATTAT-AAATGTTAT
33614676 AAT-TTTGATATATATA
1 AATATTT-ATAT-TATA
33614692 TGAGATGATC
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
23 3 0.09
24 23 0.70
25 7 0.21
ACGTcount: A:0.39, C:0.02, G:0.06, T:0.53
Consensus pattern (23 bp):
AATATTTATATTATAAATGTTAT
Found at i:33620677 original size:42 final size:42
Alignment explanation
Indices: 33620628--33620737 Score: 157
Period size: 42 Copynumber: 2.6 Consensus size: 42
33620618 CATGGCCAAG
* * *
33620628 CCACACGCCCGTGTGCCAGGCCGTGTACCTTTTGAAATGAAC
1 CCACACGCTCGTGTGCCAGGCCGTGTACCCTTCGAAATGAAC
*
33620670 CCACACGCTCGTGTGCCTGGCCGTGTACCCTTCGAAATGAAC
1 CCACACGCTCGTGTGCCAGGCCGTGTACCCTTCGAAATGAAC
* * *
33620712 CCAGATGCTTGTGTGCCAGGCCGTGT
1 CCACACGCTCGTGTGCCAGGCCGTGT
33620738 GCTAGGCCAT
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 60 1.00
ACGTcount: A:0.18, C:0.33, G:0.26, T:0.23
Consensus pattern (42 bp):
CCACACGCTCGTGTGCCAGGCCGTGTACCCTTCGAAATGAAC
Found at i:33626316 original size:51 final size:50
Alignment explanation
Indices: 33626190--33626574 Score: 351
Period size: 51 Copynumber: 7.6 Consensus size: 50
33626180 TCGATAAACG
* *
33626190 TAGTAGCCTTCACATAGTACTACACACGTGATC-AAG-TTTTACGGTTCACG
1 TAGTAGCCTTCACATAGTACTACACACGTGA-CAAAGATTTT-CGGTACACA
33626240 TAGTAGCCTTCACATAGTACTACACACGTGATCAAAGATTTTCGGTACACA
1 TAGTAGCCTTCACATAGTACTACACACGTGA-CAAAGATTTTCGGTACACA
* * * ** * *
33626291 TAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACA
1 TAGTAGCCTTCACATAGTACTACACACGTGACAAAGATTT-TCGGTACACA
* * * *
33626342 TAGTAGCCTTCTCACAGTACTACACACGTGACCAAAGCTTCTCGGTACACA
1 TAGTAGCCTTCACATAGTACTACACACGTGA-CAAAGATTTTCGGTACACA
* * * * ** * * * *
33626393 TTGTAGCCTTCACTTAGTACTACACATGTGACCATCATTGATCGATTCACG
1 TAGTAGCCTTCACATAGTACTACACACGTGACAAAGATT-TTCGGTACACA
* * * * *
33626444 TAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTAGGTACATA
1 TAGTAGCCTTCACATAGTACTACACACGTGA-CAAAGATTTTCGGTACACA
* * * * ** * *
33626495 TTGTAGCCTTCACTTAGTACTACACATGTGACCATTATTTATCGATACACG
1 TAGTAGCCTTCACATAGTACTACACACGTGACAAAGATTT-TCGGTACACA
*
33626546 TAGTAGCCTTCACACAGTACTACACACGT
1 TAGTAGCCTTCACATAGTACTACACACGT
33626575 ATTCATCGAT
Statistics
Matches: 264, Mismatches: 64, Indels: 13
0.77 0.19 0.04
Matches are distributed among these distances:
50 47 0.18
51 205 0.78
52 12 0.05
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (50 bp):
TAGTAGCCTTCACATAGTACTACACACGTGACAAAGATTTTCGGTACACA
Found at i:33626365 original size:102 final size:102
Alignment explanation
Indices: 33626190--33626574 Score: 583
Period size: 102 Copynumber: 3.8 Consensus size: 102
33626180 TCGATAAACG
* * * *** *
33626190 TAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTA-CGGTTCACGTAGTAGCCTTCACA
1 TAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAGTAGCCTTCACA
* * * *
33626254 TAGTACTACACACGTGATCAAAGATTTTCGGTACACA
66 CAGTACTACACACGTGACCAAAGCTTCTCGGTACACA
* *
33626291 TAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACATAGTAGCCTTCTCA
1 TAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAGTAGCCTTCACA
33626356 CAGTACTACACACGTGACCAAAGCTTCTCGGTACACA
66 CAGTACTACACACGTGACCAAAGCTTCTCGGTACACA
* *
33626393 TTGTAGCCTTCACTTAGTACTACACATGTGACCATCATTGATCGATTCACGTAGTAGCCTTCACA
1 TAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAGTAGCCTTCACA
* *
33626458 CAGTACTACACACGTGACCAAAGCTTCTAGGTACATA
66 CAGTACTACACACGTGACCAAAGCTTCTCGGTACACA
* * *
33626495 TTGTAGCCTTCACTTAGTACTACACATGTGACCATTATTTATCGATACACGTAGTAGCCTTCACA
1 TAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAGTAGCCTTCACA
33626560 CAGTACTACACACGT
66 CAGTACTACACACGT
33626575 ATTCATCGAT
Statistics
Matches: 261, Mismatches: 22, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
101 35 0.13
102 226 0.87
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (102 bp):
TAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAGTAGCCTTCACA
CAGTACTACACACGTGACCAAAGCTTCTCGGTACACA
Found at i:33627081 original size:31 final size:28
Alignment explanation
Indices: 33627043--33627105 Score: 72
Period size: 28 Copynumber: 2.1 Consensus size: 28
33627033 GCTTCAACTC
*
33627043 AACTTTTGTCAAAATTATAATTTTGTCCCTA
1 AACTTTTG-CAAAATTA-AATTTT-TCCCCA
* *
33627074 AACTTTTGCATAATTACATTTTTCCCCA
1 AACTTTTGCAAAATTAAATTTTTCCCCA
33627102 AACT
1 AACT
33627106 CGAAAATTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
28 9 0.31
29 5 0.17
30 7 0.24
31 8 0.28
ACGTcount: A:0.32, C:0.21, G:0.05, T:0.43
Consensus pattern (28 bp):
AACTTTTGCAAAATTAAATTTTTCCCCA
Found at i:33630878 original size:39 final size:39
Alignment explanation
Indices: 33630835--33630921 Score: 120
Period size: 39 Copynumber: 2.2 Consensus size: 39
33630825 CATGGTACAG
* *
33630835 AAGTGCTATCAAGAGTACCGAAGTACAATAGGGGCACGT
1 AAGTGCGATCAAGAGTACCGAAGTACAATAGGGGCACGC
* * *
33630874 AAGTGCGATTATGGGTACCGAAGTACAATAGGGGCACGC
1 AAGTGCGATCAAGAGTACCGAAGTACAATAGGGGCACGC
*
33630913 AAGTACGAT
1 AAGTGCGAT
33630922 TAGGGATATA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.34, C:0.17, G:0.30, T:0.18
Consensus pattern (39 bp):
AAGTGCGATCAAGAGTACCGAAGTACAATAGGGGCACGC
Found at i:33630918 original size:19 final size:19
Alignment explanation
Indices: 33630855--33630918 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
33630845 AAGAGTACCG
*
33630855 AAGTACAATAGGGGCACGT
1 AAGTACAATAGGGGCACGC
* * * *
33630874 AAGTGCGATTATGGGTAC-C
1 AAGTAC-AATAGGGGCACGC
33630893 GAAGTACAATAGGGGCACGC
1 -AAGTACAATAGGGGCACGC
33630913 AAGTAC
1 AAGTAC
33630919 GATTAGGGAT
Statistics
Matches: 33, Mismatches: 9, Indels: 6
0.69 0.19 0.12
Matches are distributed among these distances:
19 19 0.58
20 14 0.42
ACGTcount: A:0.34, C:0.17, G:0.31, T:0.17
Consensus pattern (19 bp):
AAGTACAATAGGGGCACGC
Found at i:33630922 original size:39 final size:39
Alignment explanation
Indices: 33630849--33630923 Score: 132
Period size: 39 Copynumber: 1.9 Consensus size: 39
33630839 GCTATCAAGA
* *
33630849 GTACCGAAGTACAATAGGGGCACGTAAGTGCGATTATGG
1 GTACCGAAGTACAATAGGGGCACGCAAGTACGATTATGG
33630888 GTACCGAAGTACAATAGGGGCACGCAAGTACGATTA
1 GTACCGAAGTACAATAGGGGCACGCAAGTACGATTA
33630924 GGGATATAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.33, C:0.17, G:0.31, T:0.19
Consensus pattern (39 bp):
GTACCGAAGTACAATAGGGGCACGCAAGTACGATTATGG
Found at i:33633949 original size:40 final size:40
Alignment explanation
Indices: 33633844--33633989 Score: 181
Period size: 40 Copynumber: 3.6 Consensus size: 40
33633834 GCTACTCGTT
*
33633844 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
33633884 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
33633924 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
33633965 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
33633990 CATCATTCAA
Statistics
Matches: 93, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
39 3 0.03
40 77 0.83
41 13 0.14
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:33641842 original size:41 final size:41
Alignment explanation
Indices: 33641769--33641862 Score: 138
Period size: 41 Copynumber: 2.3 Consensus size: 41
33641759 GCTACTCGTT
* *
33641769 CAAATGCCTTC-GGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGGACATAACCCGATTATAGTAACTCGCA
*
33641809 CAAATGCCTTCGGGGACTTAACCCAGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGGACATAACCC-GATTATAGTAACTCGCA
33641850 CAAATGCCTTCGG
1 CAAATGCCTTCGG
33641863 ATCTTAGTCC
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
40 11 0.22
41 35 0.71
42 3 0.06
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (41 bp):
CAAATGCCTTCGGGGACATAACCCGATTATAGTAACTCGCA
Found at i:33649977 original size:25 final size:25
Alignment explanation
Indices: 33649926--33649997 Score: 74
Period size: 25 Copynumber: 2.9 Consensus size: 25
33649916 CATCCTAACA
* *
33649926 TTGGCTCTCTTAAGCTTCTCGATAT
1 TTGGCTCTCATAAGCTTCCCGATAT
33649951 TTGGCTCTCATAAGCTTCCCG-TCAT
1 TTGGCTCTCATAAGCTTCCCGAT-AT
* * * *
33649976 TTAGCTCTTATGAGCATCCCGA
1 TTGGCTCTCATAAGCTTCCCGA
33649998 CGTATGACTC
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
24 1 0.03
25 38 0.97
ACGTcount: A:0.18, C:0.28, G:0.17, T:0.38
Consensus pattern (25 bp):
TTGGCTCTCATAAGCTTCCCGATAT
Found at i:33650060 original size:26 final size:27
Alignment explanation
Indices: 33650005--33650060 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
33649995 CGACGTATGA
*
33650005 CTCTAACGAGCTTCCTTATTTAAGGCT
1 CTCTAACGAGCTTCCTTATTTAAGGAT
* * *
33650032 CTCTAATGAGCTTCC-TGTTTATGGAT
1 CTCTAACGAGCTTCCTTATTTAAGGAT
33650058 CTC
1 CTC
33650061 CGGAGCTTCC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 11 0.44
27 14 0.56
ACGTcount: A:0.20, C:0.25, G:0.16, T:0.39
Consensus pattern (27 bp):
CTCTAACGAGCTTCCTTATTTAAGGAT
Found at i:33657876 original size:25 final size:25
Alignment explanation
Indices: 33657836--33657918 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
33657826 TGGCTCTCTT
* * *
33657836 GAGCTTCTCGATATTTGGCTCTCAC
1 GAGCTTCCCGACATTTGGCTCTTAC
* * * *
33657861 AAGCTTCCCGTCATTTAGCTCTTAT
1 GAGCTTCCCGACATTTGGCTCTTAC
* *
33657886 GAGCATCCCGACATATGGCTCTTAC
1 GAGCTTCCCGACATTTGGCTCTTAC
33657911 GAGCTTCC
1 GAGCTTCC
33657919 TGATTTAAGG
Statistics
Matches: 44, Mismatches: 14, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.19, C:0.30, G:0.18, T:0.33
Consensus pattern (25 bp):
GAGCTTCCCGACATTTGGCTCTTAC
Found at i:33657931 original size:75 final size:75
Alignment explanation
Indices: 33657800--33657947 Score: 169
Period size: 74 Copynumber: 2.0 Consensus size: 75
33657790 GCGTCCCGTT
* * * *
33657800 TTTAGCTCTCATGAGCATCCTGATATTGGCTCTCTTGAGCTTCTCGATATTTGGCTCTCACA-AG
1 TTTAGCTCTCATGAGCATCCCGACATTGGCTCTCTCGAGCTTCTCGATATTAGGCTCTCACATAG
33657864 CTTCCCGTCA
66 CTTCCCGTCA
* *
33657874 TTTAGCTCTTATGAGCATCCCGACATATGGCTCT-TACGAGCTTC-CTGAT-TTAAGGCTCTCTC
1 TTTAGCTCTCATGAGCATCCCGACAT-TGGCTCTCT-CGAGCTTCTC-GATATT-AGGCTCTCAC
33657936 ATTAGCTTCCCG
62 A-TAGCTTCCCG
33657948 ATATTGGCTC
Statistics
Matches: 62, Mismatches: 6, Indels: 9
0.81 0.08 0.12
Matches are distributed among these distances:
74 27 0.44
75 26 0.42
77 9 0.15
ACGTcount: A:0.18, C:0.28, G:0.18, T:0.36
Consensus pattern (75 bp):
TTTAGCTCTCATGAGCATCCCGACATTGGCTCTCTCGAGCTTCTCGATATTAGGCTCTCACATAG
CTTCCCGTCA
Found at i:33657979 original size:24 final size:24
Alignment explanation
Indices: 33657911--33657980 Score: 61
Period size: 24 Copynumber: 2.8 Consensus size: 24
33657901 TGGCTCTTAC
* *
33657911 GAGCTTCCTGATTTAAGGCTCTCTCAT
1 GAGCTTCCTGA-TTATGG--CTCACAT
* *
33657938 TAGCTTCCCGA-TATTGGCTCACAT
1 GAGCTTCCTGATTA-TGGCTCACAT
33657962 GAGCTTCCTGATTATGGCT
1 GAGCTTCCTGATTATGGCT
33657981 TGAAAGATCT
Statistics
Matches: 35, Mismatches: 6, Indels: 7
0.73 0.12 0.15
Matches are distributed among these distances:
24 20 0.57
25 4 0.11
26 2 0.06
27 9 0.26
ACGTcount: A:0.19, C:0.26, G:0.20, T:0.36
Consensus pattern (24 bp):
GAGCTTCCTGATTATGGCTCACAT
Found at i:33681263 original size:25 final size:24
Alignment explanation
Indices: 33681207--33681289 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 24
33681197 AGCTCATGTA
* * *
33681207 AGCATACCGATTTATAGCTCGTGAG
1 AGCATACCGA-TTACAGCTCGAGTG
* *
33681232 AGAATACCGATCTACAGTTCGAGTG
1 AGCATACCGAT-TACAGCTCGAGTG
*
33681257 AGCATACTGATTCACAGCTCGCA-TG
1 AGCATACCGATT-ACAGCTCG-AGTG
33681282 AGCATACC
1 AGCATACC
33681290 TGTACATGAA
Statistics
Matches: 46, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
24 2 0.04
25 43 0.93
26 1 0.02
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (24 bp):
AGCATACCGATTACAGCTCGAGTG
Found at i:33702772 original size:17 final size:17
Alignment explanation
Indices: 33702740--33702773 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
33702730 ATTCCAATTG
**
33702740 AACGCTCGCGCGATGGA
1 AACGCTCGCGAAATGGA
33702757 AACGCTCGCGAAATGGA
1 AACGCTCGCGAAATGGA
33702774 GATCTAGACT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.26, G:0.32, T:0.12
Consensus pattern (17 bp):
AACGCTCGCGAAATGGA
Found at i:33716943 original size:90 final size:90
Alignment explanation
Indices: 33716789--33716981 Score: 368
Period size: 90 Copynumber: 2.1 Consensus size: 90
33716779 ACACTTACAC
33716789 CTCTATTATGCCTAAACTTAAGATTTAATCTACATACTTTAACTTTTTACATTACTTAGCTTTTT
1 CTCTATTATG-CTAAACTTAAGATTTAATCTACATACTTTAACTTTTTACATTACTTAGCTTTTT
33716854 TAATTTTATAATATATTTAATCGGTA
65 TAATTTTATAATATATTTAATCGGTA
*
33716880 CTCTATTATGCTTAACTTAAGATTTAATCTACATACTTTAACTTTTTACATTACTTAGCTTTTTT
1 CTCTATTATGCTAAACTTAAGATTTAATCTACATACTTTAACTTTTTACATTACTTAGCTTTTTT
33716945 AATTTTATAATATATTTAATCGGTA
66 AATTTTATAATATATTTAATCGGTA
33716970 CTCTATTATGCT
1 CTCTATTATGCT
33716982 GACATCAATT
Statistics
Matches: 101, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
90 91 0.90
91 10 0.10
ACGTcount: A:0.31, C:0.15, G:0.06, T:0.49
Consensus pattern (90 bp):
CTCTATTATGCTAAACTTAAGATTTAATCTACATACTTTAACTTTTTACATTACTTAGCTTTTTT
AATTTTATAATATATTTAATCGGTA
Found at i:33718675 original size:16 final size:15
Alignment explanation
Indices: 33718648--33718682 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
33718638 ACAAAATCAA
33718648 ATAAAATTACATAAT
1 ATAAAATTACATAAT
*
33718663 ATAAAAGTTACATTAT
1 ATAAAA-TTACATAAT
33718679 ATAA
1 ATAA
33718683 GAATGAAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.57, C:0.06, G:0.03, T:0.34
Consensus pattern (15 bp):
ATAAAATTACATAAT
Found at i:33718876 original size:60 final size:60
Alignment explanation
Indices: 33718802--33718923 Score: 183
Period size: 60 Copynumber: 2.0 Consensus size: 60
33718792 ATACTAAACT
* * * * *
33718802 AAACACAACAATTTATAGCTTAATCCTAAATTACTAATAAATTAAATT-TTAAATAATTAC
1 AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATT-AATTATAAAATAATTAC
33718862 AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTATAAAATAATTAC
1 AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTATAAAATAATTAC
33718922 AA
1 AA
33718924 TATTCATACA
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
59 4 0.07
60 52 0.93
ACGTcount: A:0.54, C:0.13, G:0.01, T:0.32
Consensus pattern (60 bp):
AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTATAAAATAATTAC
Found at i:33718940 original size:19 final size:19
Alignment explanation
Indices: 33718916--33719368 Score: 143
Period size: 19 Copynumber: 22.3 Consensus size: 19
33718906 ATTATAAAAT
33718916 AATTACAATATTCATACAA
1 AATTACAATATTCATACAA
33718935 AATTACAATATTCATACAAACA
1 AATTACAATATTCATAC--A-A
*
33718957 ATATTACAATATCCATACAA
1 A-ATTACAATATTCATACAA
33718977 AATTACAATATTCATACAAACA
1 AATTACAATATTCATAC--A-A
33718999 ATATTACAATATTCATACAAAATTACAA
1 A-ATTACAATA-T--T-C---A-TACAA
33719027 AATTACAATATTCATACAA
1 AATTACAATATTCATACAA
* * *
33719046 AA-TACTA-ATCCAAAACTATA
1 AATTACAATATTC-ATAC-A-A
*
33719066 AA-TACAAAATTAATT-ATAAAA
1 AATTAC--AA-T-ATTCATACAA
*
33719087 TAATTAAAATATTCATACAA
1 -AATTACAATATTCATACAA
*
33719107 AATTACAA-AAT--TACAA
1 AATTACAATATTCATACAA
* *
33719123 TATTCATACAA-AAT--TACAA
1 -AAT--TACAATATTCATACAA
*
33719142 AATTACAAAATTCATACAA
1 AATTACAATATTCATACAA
* *
33719161 AA-TACTAATCA--AAAACTATA
1 AATTAC-AAT-ATTCATAC-A-A
*
33719181 AA-TACAAAATTAATT-ATAAAA
1 AATTAC--AA-T-ATTCATACAA
*
33719202 TAATTACAATATTCATAAAA
1 -AATTACAATATTCATACAA
33719222 AATTACAATATTCATACAAAA
1 AATTACAATATTCATAC--AA
*
33719243 AATTACACTATTCATA-AA
1 AATTACAATATTCATACAA
* * *
33719261 AAATACTA-ATCCA-ACACTA
1 AATTACAATATTCATACA--A
* *
33719280 TAAATACAAAATTAATT-ATAAAA
1 -AATTAC--AA-T-ATTCATACAA
33719303 TAATTACAATATTCATACAA
1 -AATTACAATATTCATACAA
*
33719323 AATTATAATATTCATACAAA
1 AATTACAATATTCATAC-AA
*
33719343 AAGTTACAATATACATACAA
1 AA-TTACAATATTCATACAA
33719363 AATTAC
1 AATTAC
33719369 CCATTGGCGC
Statistics
Matches: 338, Mismatches: 37, Indels: 118
0.69 0.08 0.24
Matches are distributed among these distances:
16 11 0.03
17 12 0.04
18 24 0.07
19 116 0.34
20 49 0.14
21 43 0.13
22 14 0.04
23 41 0.12
24 3 0.01
25 6 0.02
26 2 0.01
27 10 0.03
28 2 0.01
29 1 0.00
30 1 0.00
31 3 0.01
ACGTcount: A:0.56, C:0.14, G:0.00, T:0.30
Consensus pattern (19 bp):
AATTACAATATTCATACAA
Found at i:33718962 original size:23 final size:22
Alignment explanation
Indices: 33718916--33719019 Score: 139
Period size: 23 Copynumber: 4.9 Consensus size: 22
33718906 ATTATAAAAT
33718916 AATTACAATATTCATAC--A-A
1 AATTACAATATTCATACAAACA
33718935 AATTACAATATTCATACAAACA
1 AATTACAATATTCATACAAACA
*
33718957 ATATTACAATATCCATAC--A-A
1 A-ATTACAATATTCATACAAACA
33718977 AATTACAATATTCATACAAACA
1 AATTACAATATTCATACAAACA
33718999 ATATTACAATATTCATACAAA
1 A-ATTACAATATTCATACAAA
33719020 ATTACAAAAT
Statistics
Matches: 75, Mismatches: 2, Indels: 12
0.84 0.02 0.13
Matches are distributed among these distances:
19 32 0.43
20 2 0.03
21 3 0.04
22 4 0.05
23 34 0.45
ACGTcount: A:0.53, C:0.17, G:0.00, T:0.30
Consensus pattern (22 bp):
AATTACAATATTCATACAAACA
Found at i:33718965 original size:42 final size:42
Alignment explanation
Indices: 33718917--33719026 Score: 211
Period size: 42 Copynumber: 2.6 Consensus size: 42
33718907 TTATAAAATA
33718917 ATTACAATATTCATACAAAATTACAATATTCATACAAACAAT
1 ATTACAATATTCATACAAAATTACAATATTCATACAAACAAT
*
33718959 ATTACAATATCCATACAAAATTACAATATTCATACAAACAAT
1 ATTACAATATTCATACAAAATTACAATATTCATACAAACAAT
33719001 ATTACAATATTCATACAAAATTACAA
1 ATTACAATATTCATACAAAATTACAA
33719027 AATTACAATA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 66 1.00
ACGTcount: A:0.53, C:0.17, G:0.00, T:0.30
Consensus pattern (42 bp):
ATTACAATATTCATACAAAATTACAATATTCATACAAACAAT
Found at i:33719034 original size:27 final size:27
Alignment explanation
Indices: 33718972--33719163 Score: 182
Period size: 27 Copynumber: 7.0 Consensus size: 27
33718962 ACAATATCCA
33718972 TACAAAATTACAATATTCATAC--AA-
1 TACAAAATTACAATATTCATACAAAAT
*
33718996 -ACAATATTACAATATTCATACAAAAT
1 TACAAAATTACAATATTCATACAAAAT
33719022 TACAAAATTACAATATTCATACAAAAT
1 TACAAAATTACAATATTCATACAAAAT
* * *
33719049 ACTAATCCAAAACTATAA-ATACA-A-AATTAATT
1 --T-A--CAAAATTACAATATTCATACAA--AA-T
* *
33719081 ATAAAATAATTAAAATATTCATACAAAAT
1 -TACAA-AATTACAATATTCATACAAAAT
33719110 TACAAAATTACAATATTCATACAAAAT
1 TACAAAATTACAATATTCATACAAAAT
*
33719137 TACAAAATTACAAAATTCATACAAAAT
1 TACAAAATTACAATATTCATACAAAAT
33719164 ACTAATCAAA
Statistics
Matches: 139, Mismatches: 13, Indels: 29
0.77 0.07 0.16
Matches are distributed among these distances:
23 20 0.14
25 2 0.01
27 72 0.52
28 6 0.04
29 10 0.07
30 9 0.06
31 8 0.06
32 12 0.09
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (27 bp):
TACAAAATTACAATATTCATACAAAAT
Found at i:33719115 original size:8 final size:8
Alignment explanation
Indices: 33719102--33719153 Score: 68
Period size: 8 Copynumber: 6.1 Consensus size: 8
33719092 AAAATATTCA
33719102 TACAAAAT
1 TACAAAAT
33719110 TACAAAAT
1 TACAAAAT
*
33719118 TACAATATT
1 TACAA-AAT
33719127 CATACAAAAT
1 --TACAAAAT
33719137 TACAAAAT
1 TACAAAAT
33719145 TACAAAAT
1 TACAAAAT
33719153 T
1 T
33719154 CATACAAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
8 30 0.77
9 2 0.05
10 2 0.05
11 5 0.13
ACGTcount: A:0.58, C:0.13, G:0.00, T:0.29
Consensus pattern (8 bp):
TACAAAAT
Found at i:33719119 original size:42 final size:42
Alignment explanation
Indices: 33719068--33719264 Score: 97
Period size: 40 Copynumber: 5.0 Consensus size: 42
33719058 AAACTATAAA
*
33719068 TACAAAATTAATTATAAAATA-ATTAAAATATTCATACAAAAT
1 TACAAAATTAA-TATAAAATATATTACAATATTCATACAAAAT
*
33719110 TACAAAATTACA-AT---AT-TCA-TACAA-AAT--TACAAAAT
1 TACAAAATTA-ATATAAAATAT-ATTACAATATTCATACAAAAT
* * * ** *
33719145 TACAAAATTCATACAAAATACTAAT-CAA-AAAC-TA-TAAA-
1 TACAAAATTAATATAAAATA-TATTACAATATTCATACAAAAT
*
33719183 TACAAAATTAATTATAAAATA-ATTACAATATTCATAAAAAAT
1 TACAAAATTAA-TATAAAATATATTACAATATTCATACAAAAT
* * * * *
33719225 TACAATATTCATACAAAA-A-ATTACACTATTCATAAAAAAT
1 TACAAAATTAATATAAAATATATTACAATATTCATACAAAAT
33719265 ACTAATCCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 36
0.70 0.09 0.21
Matches are distributed among these distances:
34 1 0.01
35 18 0.15
37 4 0.03
38 21 0.17
39 20 0.16
40 27 0.22
41 11 0.09
42 19 0.16
43 1 0.01
ACGTcount: A:0.58, C:0.12, G:0.00, T:0.30
Consensus pattern (42 bp):
TACAAAATTAATATAAAATATATTACAATATTCATACAAAAT
Found at i:33719157 original size:115 final size:111
Alignment explanation
Indices: 33718977--33719343 Score: 528
Period size: 115 Copynumber: 3.4 Consensus size: 111
33718967 ATCCATACAA
*
33718977 AATTACAATATTCATACAAACAATATTACAATATTCATACAAAATTACAAAATTACAATATTCAT
1 AATTACAATATTCATACAAACAAAATTACAATATTCATACAAAATTACAAAATTACAATATTCAT
33719042 ACAAAATACTAATCCAAAACTATAAATACAAAATTAATTATAAAAT
66 ACAAAATACTAATCCAAAACTATAAATACAAAATTAATTATAAAAT
* *
33719088 AATTAAAATATTCATACAAAATTACAAAATTACAATATTCATACAAAATTACAAAATTACAAAAT
1 AATTACAATATTCATAC--AA--ACAAAATTACAATATTCATACAAAATTACAAAATTACAATAT
*
33719153 TCATACAAAATACTAATCAAAAACTATAAATACAAAATTAATTATAAAAT
62 TCATACAAAATACTAATCCAAAACTATAAATACAAAATTAATTATAAAAT
*
33719203 AATTACAATATTCAT---AA-AAAATTACAATATTCATAC---A--A-AAAATTACACTATTCAT
1 AATTACAATATTCATACAAACAAAATTACAATATTCATACAAAATTACAAAATTACAATATTCAT
* *
33719258 AAAAAATACTAATCCAACACTATAAATACAAAATTAATTATAAAAT
66 ACAAAATACTAATCCAAAACTATAAATACAAAATTAATTATAAAAT
*
33719304 AATTACAATATTCAT----ACAAAATTATAATATTCATACAAAA
1 AATTACAATATTCATACAAACAAAATTACAATATTCATACAAAA
33719344 AGTTACAATA
Statistics
Matches: 237, Mismatches: 11, Indels: 23
0.87 0.04 0.08
Matches are distributed among these distances:
100 1 0.00
101 91 0.38
102 1 0.00
104 2 0.01
107 19 0.08
108 1 0.00
110 1 0.00
111 16 0.07
113 2 0.01
115 103 0.43
ACGTcount: A:0.57, C:0.13, G:0.00, T:0.30
Consensus pattern (111 bp):
AATTACAATATTCATACAAACAAAATTACAATATTCATACAAAATTACAAAATTACAATATTCAT
ACAAAATACTAATCCAAAACTATAAATACAAAATTAATTATAAAAT
Found at i:33719247 original size:40 final size:40
Alignment explanation
Indices: 33719198--33719364 Score: 141
Period size: 40 Copynumber: 4.1 Consensus size: 40
33719188 AATTAATTAT
33719198 AAAATAATTACAATATTCATAAAAAATTACAATATTCATAC
1 AAAA-AATTACAATATTCATAAAAAATTACAATATTCATAC
* * *
33719239 AAAAAATTACACTATTCATAAAAAA-TACTA-ATCCA-AC
1 AAAAAATTACAATATTCATAAAAAATTACAATATTCATAC
*
33719276 ACTATAAA-TACAAAATTAATT-ATAAAATAATTACAATATTCATAC
1 A--AAAAATTAC--AA-T-ATTCATAAAA-AATTACAATATTCATAC
* *
33719321 --AAAATTATAATATTCATACAAAAAGTTACAATATACATAC
1 AAAAAATTACAATATTCATA-AAAAA-TTACAATATTCATAC
33719361 AAAA
1 AAAA
33719365 TTACCCATTG
Statistics
Matches: 100, Mismatches: 10, Indels: 31
0.71 0.07 0.22
Matches are distributed among these distances:
37 3 0.03
38 10 0.10
39 14 0.14
40 40 0.40
41 14 0.14
42 9 0.09
43 4 0.04
44 4 0.04
45 2 0.02
ACGTcount: A:0.57, C:0.13, G:0.01, T:0.29
Consensus pattern (40 bp):
AAAAAATTACAATATTCATAAAAAATTACAATATTCATAC
Found at i:33719266 original size:101 final size:101
Alignment explanation
Indices: 33719113--33719365 Score: 371
Period size: 101 Copynumber: 2.4 Consensus size: 101
33719103 ACAAAATTAC
*
33719113 AAAATTACAATATTCATACAAAATTACAAAATTACAAAATTCATACAAAATACTAATCAAAAACT
1 AAAATTACAATATTCATAC---A--A-AAAATTACAATATTCATACAAAATACTAATCAAAAACT
33719178 ATAAATACAAAATTAATTATAAAATAATTACAATATTCATAA
60 ATAAATACAAAATTAATTATAAAATAATTACAATATTCATAA
* * * *
33719220 AAAATTACAATATTCATACAAAAAATTACACTATTCATAAAAAATACTAATCCAACACTATAAAT
1 AAAATTACAATATTCATACAAAAAATTACAATATTCATACAAAATACTAATCAAAAACTATAAAT
*
33719285 ACAAAATTAATTATAAAATAATTACAATATTCATAC
66 ACAAAATTAATTATAAAATAATTACAATATTCATAA
* * *
33719321 AAAATTATAATATTCATACAAAAAGTTACAATATACATACAAAAT
1 AAAATTACAATATTCATACAAAAAATTACAATATTCATACAAAAT
33719366 TACCCATTGG
Statistics
Matches: 135, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
101 114 0.84
102 1 0.01
104 1 0.01
107 19 0.14
ACGTcount: A:0.57, C:0.13, G:0.00, T:0.29
Consensus pattern (101 bp):
AAAATTACAATATTCATACAAAAAATTACAATATTCATACAAAATACTAATCAAAAACTATAAAT
ACAAAATTAATTATAAAATAATTACAATATTCATAA
Found at i:33719414 original size:27 final size:27
Alignment explanation
Indices: 33719373--33719445 Score: 119
Period size: 27 Copynumber: 2.7 Consensus size: 27
33719363 AATTACCCAT
33719373 TGGCGCCTCCCTATGAGGCACTTTTAA
1 TGGCGCCTCCCTATGAGGCACTTTTAA
* *
33719400 TGGCACCTCCTTATGAGGCACTTTTAA
1 TGGCGCCTCCCTATGAGGCACTTTTAA
*
33719427 TGGTGCCTCCCTATGAGGC
1 TGGCGCCTCCCTATGAGGC
33719446 GCCACCCGAC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.18, C:0.29, G:0.23, T:0.30
Consensus pattern (27 bp):
TGGCGCCTCCCTATGAGGCACTTTTAA
Found at i:33725331 original size:25 final size:25
Alignment explanation
Indices: 33725297--33725346 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
33725287 GAAAACATGC
33725297 CTCCAAGCAGTGACGGTGGCTGAGG
1 CTCCAAGCAGTGACGGTGGCTGAGG
33725322 CTCCAAGCAGTGACGGTGGCTGAGG
1 CTCCAAGCAGTGACGGTGGCTGAGG
33725347 AGTTGGGCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.20, C:0.24, G:0.40, T:0.16
Consensus pattern (25 bp):
CTCCAAGCAGTGACGGTGGCTGAGG
Found at i:33726528 original size:28 final size:28
Alignment explanation
Indices: 33726482--33726538 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
33726472 AAAAAGTTAG
* *
33726482 ACAAATTAGTCCTTTCACATTGGATTAA
1 ACAAATTAGTCATTACACATTGGATTAA
33726510 ACAAATTAGTCATTACACATTGGATTAA
1 ACAAATTAGTCATTACACATTGGATTAA
33726538 A
1 A
33726539 GAAAAAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.40, C:0.16, G:0.11, T:0.33
Consensus pattern (28 bp):
ACAAATTAGTCATTACACATTGGATTAA
Found at i:33728686 original size:3 final size:3
Alignment explanation
Indices: 33728680--33728732 Score: 79
Period size: 3 Copynumber: 17.7 Consensus size: 3
33728670 TAATGTTACC
* * *
33728680 ATT ATT ATT ATT ATT ATT AAT ATT AAT ATT ATT ATT ATT ATT ATT ATC
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
33728728 ATT AT
1 ATT AT
33728733 ATTTCCATTT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:33729520 original size:110 final size:109
Alignment explanation
Indices: 33729225--33729607 Score: 568
Period size: 109 Copynumber: 3.5 Consensus size: 109
33729215 TTTCTAATTG
* * *
33729225 AGGCAATATTTAGCGTTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTTGATTTTTCT
1 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTCT
* * *
33729290 CGTTCAACCAAATAGCTAAATATCCTTTCAAAAATTTTAAAATA
66 CGTTCAACCAAATGGCTAAATATCCTTTTAAAAATTTTCAAATA
* * * * *
33729334 AGGCAATGTTTTGCGTTTGGAAATTCGAGGAAACATGCCTTAAGGTGCTAGGTGTCAATTTTTCT
1 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTCT
* * **
33729399 CATTCAACCAAATGGCTTAATATCCTTTTAAAACCTTTCAAATA
66 CGTTCAACCAAATGGCTAAATATCCTTTTAAAAATTTTCAAATA
* *
33729443 AGGCAATGTTTTGCGTTTGGGAAATTCGAGAGAACGTGCCCTAAGGTGCTGGGTATCGATTTTTC
1 AGGCAATGTTTTGCGTTT-GGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTC
33729508 TCGTTCAACCAAATGGCTAAATATCCTTTTAAAAAATTTTCGAAATA
65 TCGTTCAACCAAATGGCTAAATATCCTTTT-AAAAATTTTC-AAATA
*
33729555 AGGCAATGTTTTGCATTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGG
1 AGGCAATGTTTTGCGTTT-GGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGG
33729608 GAGGGGAGGG
Statistics
Matches: 243, Mismatches: 28, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
109 112 0.46
110 67 0.28
111 8 0.03
112 56 0.23
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (109 bp):
AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTCT
CGTTCAACCAAATGGCTAAATATCCTTTTAAAAATTTTCAAATA
Found at i:33731019 original size:112 final size:110
Alignment explanation
Indices: 33730662--33731083 Score: 582
Period size: 109 Copynumber: 3.8 Consensus size: 110
33730652 TTTCTAATTG
* * *
33730662 AGGCAATATTTAGCGTTT-GGAAATTCGAGAAAACGTGCCCTAAGGTGCTGAGTGTCGATTTTTC
1 AGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTC
* * * *
33730726 TCGTTCAACCAAATAGCTGAATATCCTTTCAAAAATTTTAAAATA
66 TCATTCAACCAAATAGCTAAATATCCTTTAAAAAATTTTCAAATA
* * * * *
33730771 AGGCAATGTTTTGC-TTTTGGAAATTCGAGAAAACATGCCTTAAGGTACTGGGTGTCGATTTTTT
1 AGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTC
* *
33730835 TCATTCAACCAAATGGCTTAAA-ATCC-TTAAAAAACCTTTCAAATA
66 TCATTCAACCAAATAGC-TAAATATCCTTTAAAAAA-TTTTCAAATA
* *
33730880 AGGCAATGTTTTGCGTTTGGGAAATTCGAGAGAACGTGCCCTAAGGTGCTGGGTATCGATTTTTC
1 AGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTC
* *
33730945 TCGTTCAACCAAATGGCTAAATATCCGTTTAAAAAATTTTCGAAATA
66 TCATTCAACCAAATAGCTAAATATCC-TTTAAAAAATTTTC-AAATA
*
33730992 AGGCAATGTTTTGCATTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTC
1 AGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTC
* * *
33731057 TCATTTAACCGAATAGCCAAATATCCT
66 TCATTCAACCAAATAGCTAAATATCCT
33731084 CTTGAATTTC
Statistics
Matches: 275, Mismatches: 30, Indels: 14
0.86 0.09 0.04
Matches are distributed among these distances:
108 10 0.04
109 98 0.36
110 66 0.24
111 5 0.02
112 96 0.35
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (110 bp):
AGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTC
TCATTCAACCAAATAGCTAAATATCCTTTAAAAAATTTTCAAATA
Found at i:33732093 original size:29 final size:29
Alignment explanation
Indices: 33732058--33732115 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
33732048 AACTAAACAT
33732058 ACCTAGGGAATTACAATTTCTTCTAATTA
1 ACCTAGGGAATTACAATTTCTTCTAATTA
33732087 ACCTAGGGAATTACAATTTCTTCTAATTA
1 ACCTAGGGAATTACAATTTCTTCTAATTA
33732116 CAAGAGTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.17, G:0.10, T:0.38
Consensus pattern (29 bp):
ACCTAGGGAATTACAATTTCTTCTAATTA
Found at i:33732449 original size:21 final size:21
Alignment explanation
Indices: 33732437--33732482 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
33732427 TACATTTTCC
33732437 TTTTCTTCTTTTAATCTATTA
1 TTTTCTTCTTTTAATCTATTA
33732458 TTTTCTTCTTTTAATCTATTA
1 TTTTCTTCTTTTAATCTATTA
33732479 TTTT
1 TTTT
33732483 ATTCAATAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.17, C:0.13, G:0.00, T:0.70
Consensus pattern (21 bp):
TTTTCTTCTTTTAATCTATTA
Found at i:33734972 original size:20 final size:20
Alignment explanation
Indices: 33734949--33734991 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
33734939 TTTTCTCCTT
*
33734949 CTTTCAACTTT-TTTTCTTTG
1 CTTTCAA-TTTCTATTCTTTG
*
33734969 CTTTCTATTTCTATTCTTTG
1 CTTTCAATTTCTATTCTTTG
33734989 CTT
1 CTT
33734992 ATCATCACCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 3 0.15
20 17 0.85
ACGTcount: A:0.09, C:0.21, G:0.05, T:0.65
Consensus pattern (20 bp):
CTTTCAATTTCTATTCTTTG
Found at i:33735335 original size:7 final size:7
Alignment explanation
Indices: 33735325--33735353 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
33735315 TCACCCAAAA
33735325 CCCCTTC
1 CCCCTTC
33735332 CCCCTTC
1 CCCCTTC
33735339 CCCCTTC
1 CCCCTTC
33735346 CCCCTTC
1 CCCCTTC
33735353 C
1 C
33735354 TTTTGCTATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.00, C:0.72, G:0.00, T:0.28
Consensus pattern (7 bp):
CCCCTTC
Found at i:33746073 original size:14 final size:14
Alignment explanation
Indices: 33746051--33746080 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
33746041 GCATATATAA
33746051 AAAAATAAAAAAAT
1 AAAAATAAAAAAAT
*
33746065 AAAAGTAAAAAAAT
1 AAAAATAAAAAAAT
33746079 AA
1 AA
33746081 TGAAAGGAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.83, C:0.00, G:0.03, T:0.13
Consensus pattern (14 bp):
AAAAATAAAAAAAT
Found at i:33762880 original size:22 final size:22
Alignment explanation
Indices: 33762855--33762901 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
33762845 TTTTTACTTC
* * *
33762855 TATTTTACTGCCATTTTGCTGT
1 TATTTTACTACCATTATGCTAT
*
33762877 TATTTTGCTACCATTATGCTAT
1 TATTTTACTACCATTATGCTAT
33762899 TAT
1 TAT
33762902 ATCTGTACTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.19, C:0.17, G:0.11, T:0.53
Consensus pattern (22 bp):
TATTTTACTACCATTATGCTAT
Found at i:33764429 original size:31 final size:31
Alignment explanation
Indices: 33764394--33764459 Score: 98
Period size: 31 Copynumber: 2.1 Consensus size: 31
33764384 AAAAAAACTT
33764394 AATAG-CCTAATGACTTAAATAAAAAATTTTG
1 AATAGTCC-AATGACTTAAATAAAAAATTTTG
* *
33764425 AATAGTCCAATGACTTAAATGAAAATTTTTG
1 AATAGTCCAATGACTTAAATAAAAAATTTTG
33764456 AATA
1 AATA
33764460 ATTTAATAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
31 30 0.94
32 2 0.06
ACGTcount: A:0.47, C:0.09, G:0.11, T:0.33
Consensus pattern (31 bp):
AATAGTCCAATGACTTAAATAAAAAATTTTG
Found at i:33775690 original size:20 final size:20
Alignment explanation
Indices: 33775665--33775704 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
33775655 CGTAAAATGA
*
33775665 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
33775685 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
33775705 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Done.