Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53248092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1300000 characters in sequence are not A, C, G, or T
File 115 of 175
Found at i:36167098 original size:31 final size:31
Alignment explanation
Indices: 36166550--36167109 Score: 276
Period size: 31 Copynumber: 18.3 Consensus size: 31
36166540 CGTATATAAT
* *
36166550 TATATGAAGATAGGTTGCCG-AATTGATTCG
1 TATATGAAGATAAGTTGCCGAAATTGATTTG
* * *
36166580 TATAT-AATTATACA-TTGCTGAAATTTATTTG
1 TATATGAA-GATA-AGTTGCCGAAATTGATTTG
*** **
36166611 TATATGGTTATACA-TTATCGAAATTGATTTG
1 TATATGAAGATA-AGTTGCCGAAATTGATTTG
* *
36166642 TATATGAAGATAAGTTGTCG-AATTGATTCG
1 TATATGAAGATAAGTTGCCGAAATTGATTTG
** * ** *
36166672 TATATGATTATACA-TTACTAAAATTTATTTG
1 TATATGAAGATA-AGTTGCCGAAATTGATTTG
*** ** *
36166703 TATATGGTTATATA-TTATCGAAATTTATTTG
1 TATATGAAGATA-AGTTGCCGAAATTGATTTG
*
36166734 TATATGAAGATAAGTTGCC-AAATTGATTCG
1 TATATGAAGATAAGTTGCCGAAATTGATTTG
* * *
36166764 TATAT-AATTATACA-TTGCTGAAATTTATTTG
1 TATATGAA-GATA-AGTTGCCGAAATTGATTTG
*** **
36166795 TATATGGTTATACA-TTATCGAAATTGATTTG
1 TATATGAAGATA-AGTTGCCGAAATTGATTTG
*
36166826 TATATGAAGATAAGTTGCCG-AATTGATTCG
1 TATATGAAGATAAGTTGCCGAAATTGATTTG
** * * *
36166856 TATATGATTATACA-TTACTGAAATTTATTTG
1 TATATGAAGATA-AGTTGCCGAAATTGATTTG
*** ** * *
36166887 TATATGGTTATATA-TTATCAAAATTTATTTG
1 TATATGAAGATA-AGTTGCCGAAATTGATTTG
* *
36166918 TATATGAAGATAAGTTGCC-AAATTAATTCG
1 TATATGAAGATAAGTTGCCGAAATTGATTTG
* * * *
36166948 TATAT-AATTATACA-TTGCTGAAATTTACTTG
1 TATATGAA-GATA-AGTTGCCGAAATTGATTTG
*** **
36166979 TATATGGTTATACA-TTATCGAAATTGATTTG
1 TATATGAAGATA-AGTTGCCGAAATTGATTTG
*
36167010 TATATGAAGATAAGTTGTCG-AATTGATTTG
1 TATATGAAGATAAGTTGCCGAAATTGATTTG
** ** *
36167040 TATATGATTATACTTTGCTGAAATTGATTTG
1 TATATGAAGATAAGTTGCCGAAATTGATTTG
* * *
36167071 TATATAAAGATAAGTTGCCGAATTTGATTCG
1 TATATGAAGATAAGTTGCCGAAATTGATTTG
36167102 TATATGAA
1 TATATGAA
36167110 TATATATATT
Statistics
Matches: 407, Mismatches: 101, Indels: 43
0.74 0.18 0.08
Matches are distributed among these distances:
29 6 0.01
30 128 0.31
31 273 0.67
ACGTcount: A:0.34, C:0.07, G:0.16, T:0.43
Consensus pattern (31 bp):
TATATGAAGATAAGTTGCCGAAATTGATTTG
Found at i:36167107 original size:276 final size:275
Alignment explanation
Indices: 36166500--36167109 Score: 853
Period size: 276 Copynumber: 2.2 Consensus size: 275
36166490 ATATATTATC
* *
36166500 GAAATTGATTTGTATATGAAGATAAGTTGCTGAATTGATTCGTATATAATTATATGAAGATAGGT
1 GAAATTGATTTGTATATGAAGATAAGTTGCCGAATTGATTCG--------TATATGAAGATAAGT
*
36166565 TGCCGAATTGATTCGTATATAATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTATC
58 TGCCGAATTGATTCGTATATAATTATACATTACTGAAATTTATTTGTATATGGTTATACATTATC
* * * * *
36166630 GAAATTGATTTGTATATGAAGATAAGTTGTCGAATTGATTCGTATATGATTATACATTACTAAAA
123 AAAATTGATTTGTATATGAAGATAAGTTGCCAAATTAATTCGTATATAATTATACATTACTAAAA
* * *
36166695 TTTATTTGTATATGGTTATATATTATCGAAATTTATTTGTATATGAAGATAAGTTGCCAAATTGA
188 TTTACTTGTATATGGTTATACATTATCGAAATTGATTTGTATATGAAGATAAGTTGCCAAATTGA
36166760 TTCGTATATAATTATACATTGCT
253 TTCGTATATAATTATACATTGCT
* *** ** *
36166783 GAAATTTATTTGTATATGGTTATACA-TTATCGAAATTGATTTGTATATGAAGATAAGTTGCCGA
1 GAAATTGATTTGTATATGAAGATA-AGTTGCCG-AATTGATTCGTATATGAAGATAAGTTGCCGA
* *
36166847 ATTGATTCGTATATGATTATACATTACTGAAATTTATTTGTATATGGTTATATATTATCAAAATT
64 ATTGATTCGTATATAATTATACATTACTGAAATTTATTTGTATATGGTTATACATTATCAAAATT
* * *
36166912 TATTTGTATATGAAGATAAGTTGCCAAATTAATTCGTATATAATTATACATTGCTGAAATTTACT
129 GATTTGTATATGAAGATAAGTTGCCAAATTAATTCGTATATAATTATACATTACTAAAATTTACT
* * *
36166977 TGTATATGGTTATACATTATCGAAATTGATTTGTATATGAAGATAAGTTGTCGAATTGATTTGTA
194 TGTATATGGTTATACATTATCGAAATTGATTTGTATATGAAGATAAGTTGCCAAATTGATTCGTA
* *
36167042 TATGATTATACTTTGCT
259 TATAATTATACATTGCT
*
36167059 GAAATTGATTTGTATATAAAGATAAGTTGCCGAATTTGATTCGTATATGAA
1 GAAATTGATTTGTATATGAAGATAAGTTGCCGAA-TTGATTCGTATATGAA
36167110 TATATATATT
Statistics
Matches: 287, Mismatches: 36, Indels: 15
0.85 0.11 0.04
Matches are distributed among these distances:
275 3 0.01
276 251 0.87
283 23 0.08
284 10 0.03
ACGTcount: A:0.35, C:0.07, G:0.16, T:0.43
Consensus pattern (275 bp):
GAAATTGATTTGTATATGAAGATAAGTTGCCGAATTGATTCGTATATGAAGATAAGTTGCCGAAT
TGATTCGTATATAATTATACATTACTGAAATTTATTTGTATATGGTTATACATTATCAAAATTGA
TTTGTATATGAAGATAAGTTGCCAAATTAATTCGTATATAATTATACATTACTAAAATTTACTTG
TATATGGTTATACATTATCGAAATTGATTTGTATATGAAGATAAGTTGCCAAATTGATTCGTATA
TAATTATACATTGCT
Found at i:36167109 original size:92 final size:92
Alignment explanation
Indices: 36166550--36167075 Score: 863
Period size: 92 Copynumber: 5.7 Consensus size: 92
36166540 CGTATATAAT
*
36166550 TATATGAAGATAGGTTGCCGAATTGATTCGTATATAATTATACATTGCTGAAATTTATTTGTATA
1 TATATGAAGATAAGTTGCCGAATTGATTCGTATATAATTATACATTGCTGAAATTTATTTGTATA
36166615 TGGTTATACATTATCGAAATTGATTTG
66 TGGTTATACATTATCGAAATTGATTTG
* * * *
36166642 TATATGAAGATAAGTTGTCGAATTGATTCGTATATGATTATACATTACTAAAATTTATTTGTATA
1 TATATGAAGATAAGTTGCCGAATTGATTCGTATATAATTATACATTGCTGAAATTTATTTGTATA
* *
36166707 TGGTTATATATTATCGAAATTTATTTG
66 TGGTTATACATTATCGAAATTGATTTG
*
36166734 TATATGAAGATAAGTTGCCAAATTGATTCGTATATAATTATACATTGCTGAAATTTATTTGTATA
1 TATATGAAGATAAGTTGCCGAATTGATTCGTATATAATTATACATTGCTGAAATTTATTTGTATA
36166799 TGGTTATACATTATCGAAATTGATTTG
66 TGGTTATACATTATCGAAATTGATTTG
* *
36166826 TATATGAAGATAAGTTGCCGAATTGATTCGTATATGATTATACATTACTGAAATTTATTTGTATA
1 TATATGAAGATAAGTTGCCGAATTGATTCGTATATAATTATACATTGCTGAAATTTATTTGTATA
* * *
36166891 TGGTTATATATTATCAAAATTTATTTG
66 TGGTTATACATTATCGAAATTGATTTG
* * *
36166918 TATATGAAGATAAGTTGCCAAATTAATTCGTATATAATTATACATTGCTGAAATTTACTTGTATA
1 TATATGAAGATAAGTTGCCGAATTGATTCGTATATAATTATACATTGCTGAAATTTATTTGTATA
36166983 TGGTTATACATTATCGAAATTGATTTG
66 TGGTTATACATTATCGAAATTGATTTG
* * * * *
36167010 TATATGAAGATAAGTTGTCGAATTGATTTGTATATGATTATACTTTGCTGAAATTGATTTGTATA
1 TATATGAAGATAAGTTGCCGAATTGATTCGTATATAATTATACATTGCTGAAATTTATTTGTATA
36167075 T
66 T
36167076 AAAGATAAGT
Statistics
Matches: 398, Mismatches: 36, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
92 398 1.00
ACGTcount: A:0.34, C:0.07, G:0.15, T:0.44
Consensus pattern (92 bp):
TATATGAAGATAAGTTGCCGAATTGATTCGTATATAATTATACATTGCTGAAATTTATTTGTATA
TGGTTATACATTATCGAAATTGATTTG
Found at i:36173298 original size:31 final size:31
Alignment explanation
Indices: 36173263--36173612 Score: 189
Period size: 31 Copynumber: 11.4 Consensus size: 31
36173253 TACATTGCTA
* * *
36173263 AAATTTATTTGTACATGGTTATATATTATCG
1 AAATTGATTTGTATATGATTATATATTATCG
** **
36173294 AAATTGATTTGTATATGAAGATA-AGTTGCCG
1 AAATTGATTTGTATATGATTATATA-TTATCG
* * * *
36173325 -AATTGATTCGTATATAATTATACATT-GCTG
1 AAATTGATTTGTATATGATTATATATTATC-G
* *
36173355 AAATTTATTTGTATATGGTTATATATTATCG
1 AAATTGATTTGTATATGATTATATATTATCG
** * *
36173386 AAATTGATTTGTATATGAAGATA-AGTCA-CC
1 AAATTGATTTGTATATGATTATATA-TTATCG
* * * * *
36173416 AAATTGATTCGTATATAATTATACATT-GCTA
1 AAATTGATTTGTATATGATTATATATTATC-G
* * *
36173447 AAATTTATTTGTATATGGTTATACATTATCG
1 AAATTGATTTGTATATGATTATATATTATCG
* ** **
36173478 AAATTGATTTGTATATAAAGATA-AGTTGCCG
1 AAATTGATTTGTATATGATTATATA-TTATCG
* * *
36173509 -AATTGATTCGTATATGGTTATACATTATCG
1 AAATTGATTTGTATATGATTATATATTATCG
* ** **
36173539 AAATTGATTTGTATATTAAGATA-ACTTGCCG
1 AAATTGATTTGTATATGATTATATA-TTATCG
* * *
36173570 AATTTGATTTGTATATGAATATATATATTGTTG
1 AAATTGATTTGTATATG-AT-TATATATTATCG
36173603 -AATTGATTTG
1 AAATTGATTTG
36173613 AACATTGGAT
Statistics
Matches: 238, Mismatches: 64, Indels: 33
0.71 0.19 0.10
Matches are distributed among these distances:
29 1 0.00
30 68 0.29
31 149 0.63
32 12 0.05
33 7 0.03
34 1 0.00
ACGTcount: A:0.35, C:0.07, G:0.15, T:0.43
Consensus pattern (31 bp):
AAATTGATTTGTATATGATTATATATTATCG
Found at i:36173365 original size:61 final size:59
Alignment explanation
Indices: 36173281--36173612 Score: 231
Period size: 61 Copynumber: 5.4 Consensus size: 59
36173271 TTGTACATGG
* *
36173281 TTATATATTATCGAAATTGATTTGTATATGAAGATAAGTTGCCGAATTGATTCGTATATAA
1 TTATACATTAT-GAAATTGATTTGTATATGAAGATAA-TTGCCGAATTGATTTGTATATAA
* * *** **
36173342 TTATACATTGCTGAAATTTATTTGTATATGGTTATATATTATCGAAATTGATTTGTATATGAA
1 TTATACATT-ATGAAATTGATTTGTATATGAAGATA-ATTGCCG-AATTGATTTGTATAT-AA
* * ** * * ** * **
36173405 -GATA-AGTCACCAAATTGATTCGTATAT-AATTATACATTGCTAAAATTTATTTGTATATGG
1 TTATACA-TTATGAAATTGATTTGTATATGAA-GATA-ATTGC-CGAATTGATTTGTATATAA
* * **
36173465 TTATACATTATCGAAATTGATTTGTATATAAAGATAAGTTGCCGAATTGATTCGTATATGG
1 TTATACATTAT-GAAATTGATTTGTATATGAAGATAA-TTGCCGAATTGATTTGTATATAA
*
36173526 TTATACATTATCGAAATTGATTTGTATATTAAGATAACTTGCCGAATTTGATTTGTATATGAA
1 TTATACATTAT-GAAATTGATTTGTATATGAAGATAA-TTGCCGAA-TTGATTTGTATAT-AA
* *
36173589 TATATATATTGTTG-AATTGATTTG
1 T-TATACATT-ATGAAATTGATTTG
36173613 AACATTGGAT
Statistics
Matches: 212, Mismatches: 43, Indels: 30
0.74 0.15 0.11
Matches are distributed among these distances:
61 133 0.63
62 55 0.26
63 15 0.07
64 8 0.04
65 1 0.00
ACGTcount: A:0.35, C:0.07, G:0.15, T:0.43
Consensus pattern (59 bp):
TTATACATTATGAAATTGATTTGTATATGAAGATAATTGCCGAATTGATTTGTATATAA
Found at i:36173554 original size:92 final size:92
Alignment explanation
Indices: 36173232--36173534 Score: 516
Period size: 92 Copynumber: 3.3 Consensus size: 92
36173222 ATACTTTTCT
* *
36173232 GAATTAATTCGTATATAATTATACATTGCTAAAATTTATTTGTACATGGTTATATATTATCGAAA
1 GAATTGATTCGTATATAATTATACATTGCTAAAATTTATTTGTATATGGTTATATATTATCGAAA
36173297 TTGATTTGTATATGAAGATAAGTTGCC
66 TTGATTTGTATATGAAGATAAGTTGCC
*
36173324 GAATTGATTCGTATATAATTATACATTGCTGAAATTTATTTGTATATGGTTATATATTATCGAAA
1 GAATTGATTCGTATATAATTATACATTGCTAAAATTTATTTGTATATGGTTATATATTATCGAAA
**
36173389 TTGATTTGTATATGAAGATAAGTCACC
66 TTGATTTGTATATGAAGATAAGTTGCC
* *
36173416 AAATTGATTCGTATATAATTATACATTGCTAAAATTTATTTGTATATGGTTATACATTATCGAAA
1 GAATTGATTCGTATATAATTATACATTGCTAAAATTTATTTGTATATGGTTATATATTATCGAAA
*
36173481 TTGATTTGTATATAAAGATAAGTTGCC
66 TTGATTTGTATATGAAGATAAGTTGCC
**
36173508 GAATTGATTCGTATATGGTTATACATT
1 GAATTGATTCGTATATAATTATACATT
36173535 ATCGAAATTG
Statistics
Matches: 197, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
92 197 1.00
ACGTcount: A:0.35, C:0.08, G:0.15, T:0.43
Consensus pattern (92 bp):
GAATTGATTCGTATATAATTATACATTGCTAAAATTTATTTGTATATGGTTATATATTATCGAAA
TTGATTTGTATATGAAGATAAGTTGCC
Found at i:36173577 original size:92 final size:91
Alignment explanation
Indices: 36173232--36173588 Score: 411
Period size: 92 Copynumber: 3.9 Consensus size: 91
36173222 ATACTTTTCT
* * * *
36173232 GAATTAATTCGTATATAATTATACATTGCTAAAATTTATTTGTACATGGT-TATATA-TTATCGA
1 GAATTGATTCGTATATAATTATACATTGCTGAAATTTATTTGTATAT--TAGATA-ACTTATCGA
36173295 AATTGATTTGTATATGAAGATAAGTTGCC
63 AATTGATTTGTATATGAAGATAAGTTGCC
*
36173324 GAATTGATTCGTATATAATTATACATTGCTGAAATTTATTTGTATATGGT-TATATA-TTATCGA
1 GAATTGATTCGTATATAATTATACATTGCTGAAATTTATTTGTATAT--TAGATA-ACTTATCGA
**
36173387 AATTGATTTGTATATGAAGATAAGTCACC
63 AATTGATTTGTATATGAAGATAAGTTGCC
* * * *
36173416 AAATTGATTCGTATATAATTATACATTGCTAAAATTTATTTGTATA-TGGTTATACATTATCGAA
1 GAATTGATTCGTATATAATTATACATTGCTGAAATTTATTTGTATATTAGATA-AC-TTATCGAA
*
36173480 ATTGATTTGTATATAAAGATAAGTTGCC
64 ATTGATTTGTATATGAAGATAAGTTGCC
** * * **
36173508 GAATTGATTCGTATATGGTTATACATT-ATCGAAATTGATTTGTATATTAAGATAACTTGCCGAA
1 GAATTGATTCGTATATAATTATACATTGCT-GAAATTTATTTGTATATT-AGATAACTTATCGAA
*
36173572 TTTGATTTGTATATGAA
64 ATTGATTTGTATATGAA
36173589 TATATATATT
Statistics
Matches: 235, Mismatches: 24, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
89 1 0.00
90 4 0.02
91 1 0.00
92 223 0.95
93 3 0.01
94 3 0.01
ACGTcount: A:0.35, C:0.08, G:0.15, T:0.42
Consensus pattern (91 bp):
GAATTGATTCGTATATAATTATACATTGCTGAAATTTATTTGTATATTAGATAACTTATCGAAAT
TGATTTGTATATGAAGATAAGTTGCC
Found at i:36173579 original size:184 final size:183
Alignment explanation
Indices: 36173233--36173588 Score: 545
Period size: 184 Copynumber: 1.9 Consensus size: 183
36173223 TACTTTTCTG
*
36173233 AATTAATTCGTATATAATTATACATTGCTAAAATTTATTTGTACATGGTTATATATTATCGAAAT
1 AATTAATTCGTATATAATTATACATTGCTAAAATTTATTTGTACATGGTTATACATTATCGAAAT
* *
36173298 TGATTTGTATATGAAGATAAGTTGCCGAATTGATTCGTATATAATTATACATTGCTGAAATTTAT
66 TGATTTGTATATAAAGATAAGTTGCCGAATTGATTCGTATATAATTATACATTGCTGAAATTGAT
* * *
36173363 TTGTATATGGTTATATATTATCGAAATTGATTTGTATATGAAGATAAGTCACCA
131 TTGTATAT-GTAAGATATTACCGAAATTGATTTGTATATGAAGATAAGTCACCA
* *
36173417 AATTGATTCGTATATAATTATACATTGCTAAAATTTATTTGTATATGGTTATACATTATCGAAAT
1 AATTAATTCGTATATAATTATACATTGCTAAAATTTATTTGTACATGGTTATACATTATCGAAAT
** *
36173482 TGATTTGTATATAAAGATAAGTTGCCGAATTGATTCGTATATGGTTATACATT-ATCGAAATTGA
66 TGATTTGTATATAAAGATAAGTTGCCGAATTGATTCGTATATAATTATACATTGCT-GAAATTGA
* *
36173546 TTTGTATAT-TAAGATAACTTGCCGAATTTGATTTGTATATGAA
130 TTTGTATATGTAAGAT-A-TTACCGAAATTGATTTGTATATGAA
36173589 TATATATATT
Statistics
Matches: 156, Mismatches: 13, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
182 4 0.03
183 2 0.01
184 150 0.96
ACGTcount: A:0.35, C:0.08, G:0.15, T:0.42
Consensus pattern (183 bp):
AATTAATTCGTATATAATTATACATTGCTAAAATTTATTTGTACATGGTTATACATTATCGAAAT
TGATTTGTATATAAAGATAAGTTGCCGAATTGATTCGTATATAATTATACATTGCTGAAATTGAT
TTGTATATGTAAGATATTACCGAAATTGATTTGTATATGAAGATAAGTCACCA
Found at i:36177524 original size:26 final size:26
Alignment explanation
Indices: 36177488--36177538 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
36177478 TTTACATTAA
36177488 AAGATTAGTCATAAAGAAAATCAACC
1 AAGATTAGTCATAAAGAAAATCAACC
36177514 AAGATTAGTCATAAAGAAAATCAAC
1 AAGATTAGTCATAAAGAAAATCAAC
36177539 TAAATACCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.55, C:0.14, G:0.12, T:0.20
Consensus pattern (26 bp):
AAGATTAGTCATAAAGAAAATCAACC
Found at i:36182834 original size:27 final size:27
Alignment explanation
Indices: 36182804--36182876 Score: 76
Period size: 32 Copynumber: 2.5 Consensus size: 27
36182794 TGTCTTGAAT
36182804 TTGTGAGATATTGATTATGTTTTAAGC
1 TTGTGAGATATTGATTATGTTTTAAGC
*
36182831 TTGTTAGATATTGAATTTATTATGTTTTAAGC
1 TTGTGAGATATTG-----ATTATGTTTTAAGC
36182863 TTGTTG-GATATTGA
1 TTG-TGAGATATTGA
36182877 AATGATTGAC
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
27 13 0.34
32 24 0.63
33 1 0.03
ACGTcount: A:0.26, C:0.03, G:0.21, T:0.51
Consensus pattern (27 bp):
TTGTGAGATATTGATTATGTTTTAAGC
Found at i:36182856 original size:32 final size:32
Alignment explanation
Indices: 36182817--36182877 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
36182807 TGAGATATTG
36182817 ATTATGTTTTAAGCTTGTTAGATATTGAATTT
1 ATTATGTTTTAAGCTTGTTAGATATTGAATTT
*
36182849 ATTATGTTTTAAGCTTGTTGGATATTGAA
1 ATTATGTTTTAAGCTTGTTAGATATTGAA
36182878 ATGATTGACA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.28, C:0.03, G:0.18, T:0.51
Consensus pattern (32 bp):
ATTATGTTTTAAGCTTGTTAGATATTGAATTT
Found at i:36184142 original size:20 final size:20
Alignment explanation
Indices: 36184114--36184152 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
36184104 CAATTTAAAA
*
36184114 TATAAAAATTTGTTAATATG
1 TATAAAAATTTATTAATATG
*
36184134 TATATAAATTTATTAATAT
1 TATAAAAATTTATTAATAT
36184153 ATGTAAAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (20 bp):
TATAAAAATTTATTAATATG
Found at i:36184263 original size:14 final size:14
Alignment explanation
Indices: 36184235--36184290 Score: 62
Period size: 14 Copynumber: 4.0 Consensus size: 14
36184225 CATCCAAACA
36184235 CCAGAAAAT-ATTTT
1 CCAG-AAATCATTTT
36184249 -CAGTAAATCATTTT
1 CCAG-AAATCATTTT
*
36184263 CCAAAAATCATTTT
1 CCAGAAATCATTTT
*
36184277 CCAGAAAACATTTT
1 CCAGAAATCATTTT
36184291 ACTAGCAAAC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
13 7 0.19
14 27 0.75
15 2 0.06
ACGTcount: A:0.41, C:0.18, G:0.05, T:0.36
Consensus pattern (14 bp):
CCAGAAATCATTTT
Found at i:36193173 original size:50 final size:52
Alignment explanation
Indices: 36193064--36193178 Score: 135
Period size: 50 Copynumber: 2.2 Consensus size: 52
36193054 TTAATGTAAT
* * *
36193064 ACTTAATTTAATGATGCAGACTTAAACTAACATCGGAGTTACATAATGCATG
1 ACTTTATTTAATGATGCAGACTTAAACTAACATCGAAGTTACATAATGCATA
* * * * *
36193116 TCATTATTT-ATGATGCATACTT-AACTAGCATTGAAGTTACATAATGCATA
1 ACTTTATTTAATGATGCAGACTTAAACTAACATCGAAGTTACATAATGCATA
*
36193166 ACTTTATTAAATG
1 ACTTTATTTAATG
36193179 CAAAACCCAC
Statistics
Matches: 51, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
50 30 0.59
51 15 0.29
52 6 0.12
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.36
Consensus pattern (52 bp):
ACTTTATTTAATGATGCAGACTTAAACTAACATCGAAGTTACATAATGCATA
Found at i:36198800 original size:39 final size:39
Alignment explanation
Indices: 36198741--36198819 Score: 113
Period size: 39 Copynumber: 2.0 Consensus size: 39
36198731 TATTGAAAAG
* ** *
36198741 GAAAGGTTGCGATTATATGGAAAGGCACACTATGTGTGA
1 GAAAAGTTGCGATTATATGGAAAAACACACTATATGTGA
*
36198780 GAAAAGTTGCGGTTATATGGAAAAACACACTATATGTGA
1 GAAAAGTTGCGATTATATGGAAAAACACACTATATGTGA
36198819 G
1 G
36198820 CATTCCTGAG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.37, C:0.10, G:0.28, T:0.25
Consensus pattern (39 bp):
GAAAAGTTGCGATTATATGGAAAAACACACTATATGTGA
Found at i:36200517 original size:45 final size:45
Alignment explanation
Indices: 36200453--36200545 Score: 168
Period size: 45 Copynumber: 2.1 Consensus size: 45
36200443 TACTATGTGA
*
36200453 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGCTGATTCC
1 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
*
36200498 ACCGGACATTATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
1 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
36200543 ACC
1 ACC
36200546 AAGGATCTGT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (45 bp):
ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
Found at i:36205914 original size:51 final size:49
Alignment explanation
Indices: 36205755--36205935 Score: 202
Period size: 51 Copynumber: 3.6 Consensus size: 49
36205745 AGTGATGGTA
36205755 ACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGAATG-ATAGGTC
1 ACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGG-ATGTATA-GTC
* * * * * * *
36205805 GCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGAATAGTTTCGATC
1 ACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGAT-GTATAG-TC
* * * *
36205856 ACGTGTGTAGTACTATGTGCAAGATACTACGTTTATCGGATGGTAATAGTC
1 ACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGAT-GT-ATAGTC
36205907 ACATGTGTAGTACTATGTGCAGGCTACTA
1 ACATGTGTAGTACTATGTGCAGGCTACTA
36205936 TGTGAACCGG
Statistics
Matches: 105, Mismatches: 22, Indels: 7
0.78 0.16 0.05
Matches are distributed among these distances:
49 2 0.02
50 36 0.34
51 65 0.62
52 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (49 bp):
ACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGTATAGTC
Found at i:36216383 original size:49 final size:50
Alignment explanation
Indices: 36216213--36216729 Score: 161
Period size: 49 Copynumber: 10.7 Consensus size: 50
36216203 CGCTAATGAT
* *
36216213 GTGAGATTCGCTGTTGTAGCTTCAATCTATTTGACTGCAATGTTGGGGAA
1 GTGAGATTCGCCGTTGTAGCTTCAATCTATTTAACTGCAATGTTGGGGAA
* * * * ** * ** ***
36216263 GCGAGATTCGCCATCGTAGCTTCAATCTGTTCCACTACACCG-CAAGGAA
1 GTGAGATTCGCCGTTGTAGCTTCAATCTATTTAACTGCAATGTTGGGGAA
* * * * *
36216312 ATGAGATTCACCGTTATGGCTTCAATCT-TTTAATTGCAATGTTGGGGAA
1 GTGAGATTCGCCGTTGTAGCTTCAATCTATTTAACTGCAATGTTGGGGAA
* * * *** *
36216361 GTGAGACTCGCTGTTGTAGCTTCAATCTGTTCCGCTGC-ATCGCCT--GGAA
1 GTGAGATTCGCCGTTGTAGCTTCAATCTATTTAACTGCAAT-G-TTGGGGAA
* * * *
36216410 GTAAGATTCGCCGTTGTGGCTTCGATCTA--T--C-GCAA---TGAGGAA
1 GTGAGATTCGCCGTTGTAGCTTCAATCTATTTAACTGCAATGTTGGGGAA
* * *** * **
36216452 GTGAGACTCGCCGTTGTAGCTTCAATCTGTTCCGCTGC-ATCGCCT--AAAA
1 GTGAGATTCGCCGTTGTAGCTTCAATCTATTTAACTGCAAT-G-TTGGGGAA
* * ** * * *
36216501 GTAAGATTCACTATTGTGGCTTCGATCT-TTTAAATTGCAA---TGGGGAA
1 GTGAGATTCGCCGTTGTAGCTTCAATCTATTT-AACTGCAATGTTGGGGAA
* * * *****
36216548 GTGAGACTCGCCGTTGTAGCTTCAATCTGTTCT-GCTGC-ATCACCTGGAA
1 GTGAGATTCGCCGTTGTAGCTTCAATCTATT-TAACTGCAATGTTGGGGAA
* * * * *
36216597 ATAAGATTCGCCGTTGTGGCTTCGATCT-TTTAAACTGCAATGTCGGGGAA
1 GTGAGATTCGCCGTTGTAGCTTCAATCTATTT-AACTGCAATGTTGGGGAA
* * * ** * *
36216647 GT-ATGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGC-AT-TTCCAGGGAG
1 GTGA-GATTCGCCGTTGTAGCTTCAATCTATTTAACTGCAATGTT--GGGGAA
*
36216697 GTGAGATTCGCTGTTGTAGCTTCAATCT-TTTAA
1 GTGAGATTCGCCGTTGTAGCTTCAATCTATTTAA
36216730 ATTGCAATCT
Statistics
Matches: 330, Mismatches: 103, Indels: 69
0.66 0.21 0.14
Matches are distributed among these distances:
40 1 0.00
42 28 0.08
44 2 0.01
45 3 0.01
46 3 0.01
47 29 0.09
48 14 0.04
49 144 0.44
50 101 0.31
51 5 0.02
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.32
Consensus pattern (50 bp):
GTGAGATTCGCCGTTGTAGCTTCAATCTATTTAACTGCAATGTTGGGGAA
Found at i:36216587 original size:96 final size:96
Alignment explanation
Indices: 36216170--36216737 Score: 494
Period size: 96 Copynumber: 5.9 Consensus size: 96
36216160 AAAACAAGGT
* * * * * *
36216170 TCGCCATTGTAGCTTCAATCTGTTCCACTGTATCG-CT-AATGATGTGAGATTCGCTGTTGTAGC
1 TCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGAA--A-GTAAGATTCGCCGTTGTGGC
* * * * *
36216233 TTCAATCTATTTGACTGCAATGTTGGGGAAGCGAGAT
63 TTCGATCT-TTTAATTGCAA--TTGGGGAAGTGAGAC
* * * * * ** * * *
36216270 TCGCCATCGTAGCTTCAATCTGTTCCACTACACCGCAAGGAAA-TGAGATTCACCGTTATGGCTT
1 TCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGC-CTGAAAGTAAGATTCGCCGTTGTGGCTT
*
36216334 CAATCTTTTAATTGCAATGTTGGGGAAGTGAGAC
65 CGATCTTTTAATTGCAA--TTGGGGAAGTGAGAC
* *
36216368 TCGCTGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAGTAAGATTCGCCGTTGTGGCTTC
1 TCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGAAAGTAAGATTCGCCGTTGTGGCTTC
* *
36216433 GATC---T-ATCGCAA-TGAGGAAGTGAGAC
66 GATCTTTTAATTGCAATTGGGGAAGTGAGAC
* * **
36216459 TCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTAAAAGTAAGATTCACTATTGTGGCTTC
1 TCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGAAAGTAAGATTCGCCGTTGTGGCTTC
36216524 GATCTTTTAAATTGCAA-TGGGGAAGTGAGAC
66 GATCTTTT-AATTGCAATTGGGGAAGTGAGAC
* *
36216555 TCGCCGTTGTAGCTTCAATCTGTTCTGCTGCATCACCTGGAAA-TAAGATTCGCCGTTGTGGCTT
1 TCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCT-GAAAGTAAGATTCGCCGTTGTGGCTT
*
36216619 CGATCTTTTAAACTGCAATGTCGGGGAAGT-ATGA-
65 CGATCTTTT-AATTGCAAT-T-GGGGAAGTGA-GAC
* * ** * * * * * *
36216653 TCCGCTGTTGTAGCTTCAATCTGTTCCACTGCATTTCCAGGGAGGTGAGATTCGCTGTTGTAGCT
1 T-CGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCC-TGAAAGTAAGATTCGCCGTTGTGGCT
*
36216718 TCAATCTTTTAAATTGCAAT
64 TCGATCTTTT-AATTGCAAT
36216738 CTATGGTTAC
Statistics
Matches: 394, Mismatches: 57, Indels: 34
0.81 0.12 0.07
Matches are distributed among these distances:
91 76 0.19
94 7 0.02
95 1 0.00
96 90 0.23
97 6 0.02
98 79 0.20
99 66 0.17
100 66 0.17
101 1 0.00
103 2 0.01
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.33
Consensus pattern (96 bp):
TCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGAAAGTAAGATTCGCCGTTGTGGCTTC
GATCTTTTAATTGCAATTGGGGAAGTGAGAC
Found at i:36216684 original size:50 final size:50
Alignment explanation
Indices: 36216543--36216724 Score: 138
Period size: 50 Copynumber: 3.7 Consensus size: 50
36216533 AATTGCAATG
* ** **
36216543 GGGAAGTGAGA-CTCGCCGTTGTAGCTTCAATCTGTTCTGCTGCATCACC-
1 GGGAAGTGAGATC-CGCTGTTGTAGCTTCAATCTGTTCCACTGCATGTCCA
* * * * * * * * ** *
36216592 TGGAAATAAGATTCGCCGTTGTGGCTTCGATCTTTTAAACTGCAATGT-CG
1 GGGAAGTGAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGC-ATGTCCA
*
36216642 GGGAAGT-ATGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCATTTCCA
1 GGGAAGTGA-GATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCATGTCCA
* *
36216692 GGGAGGTGAGATTCGCTGTTGTAGCTTCAATCT
1 GGGAAGTGAGATCCGCTGTTGTAGCTTCAATCT
36216725 TTTAAATTGC
Statistics
Matches: 102, Mismatches: 25, Indels: 11
0.74 0.18 0.08
Matches are distributed among these distances:
49 37 0.36
50 64 0.63
51 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.26, T:0.32
Consensus pattern (50 bp):
GGGAAGTGAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCATGTCCA
Found at i:36229316 original size:9 final size:10
Alignment explanation
Indices: 36229305--36229387 Score: 73
Period size: 12 Copynumber: 7.9 Consensus size: 10
36229295 GGTATAAATA
36229305 AATAAATAA-
1 AATAAATAAT
*
36229314 AATGCAATAAT
1 AAT-AAATAAT
36229325 AATAATGATAAT
1 AATAA--ATAAT
36229337 AAT-AATAAT
1 AATAAATAAT
36229346 AAT-AATAAT
1 AATAAATAAT
36229355 AATAATAATAAT
1 AAT-A-AATAAT
36229367 AATAAATTCAAT
1 AATAAA-T-AAT
36229379 AATAAATAA
1 AATAAATAA
36229388 AATGACAGGA
Statistics
Matches: 63, Mismatches: 2, Indels: 17
0.77 0.02 0.21
Matches are distributed among these distances:
9 20 0.32
10 10 0.16
11 7 0.11
12 26 0.41
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (10 bp):
AATAAATAAT
Found at i:36229379 original size:15 final size:14
Alignment explanation
Indices: 36229319--36229388 Score: 65
Period size: 15 Copynumber: 4.9 Consensus size: 14
36229309 AATAAAATGC
36229319 AATAATAAT-AATGAT
1 AATAATAATAAAT--T
36229334 AATAATAAT-AA-T
1 AATAATAATAAATT
*
36229346 AATAATAATAATAAT
1 AATAATAATAA-ATT
36229361 AATAATAATAAATT
1 AATAATAATAAATT
36229375 CAATAATAAATAAA
1 -AATAAT-AATAAA
36229389 ATGACAGGAT
Statistics
Matches: 49, Mismatches: 1, Indels: 9
0.83 0.02 0.15
Matches are distributed among these distances:
12 10 0.20
13 1 0.02
14 3 0.06
15 29 0.59
16 6 0.12
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (14 bp):
AATAATAATAAATT
Found at i:36229383 original size:3 final size:3
Alignment explanation
Indices: 36229319--36229371 Score: 97
Period size: 3 Copynumber: 17.7 Consensus size: 3
36229309 AATAAAATGC
*
36229319 AAT AAT AAT AAT GAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
36229367 AAT AA
1 AAT AA
36229372 ATTCAATAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:36236593 original size:16 final size:16
Alignment explanation
Indices: 36236572--36236606 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
36236562 ATTAGTAATT
*
36236572 TTTTTTATATTTCTTA
1 TTTTTTATATTTCATA
*
36236588 TTTTTTATTTTTCATA
1 TTTTTTATATTTCATA
36236604 TTT
1 TTT
36236607 AATTAGTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTTTATATTTCATA
Found at i:36243143 original size:16 final size:16
Alignment explanation
Indices: 36243122--36243156 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
36243112 AATTAGTAAT
*
36243122 TTTTTTATATTTCTTA
1 TTTTTTATATTTCATA
*
36243138 TTTTTTATTTTTCATA
1 TTTTTTATATTTCATA
36243154 TTT
1 TTT
36243157 AATTATTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTTTATATTTCATA
Found at i:36243147 original size:24 final size:24
Alignment explanation
Indices: 36243122--36243168 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
36243112 AATTAGTAAT
* *
36243122 TTTTTTATATTT-CTTATTTTTTA
1 TTTTTCATATTTAATTATTTTTTA
36243145 TTTTTCATATTTAATTATTTTTTA
1 TTTTTCATATTTAATTATTTTTTA
36243169 AATCTATGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.74
Consensus pattern (24 bp):
TTTTTCATATTTAATTATTTTTTA
Found at i:36243257 original size:21 final size:19
Alignment explanation
Indices: 36243231--36243278 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 19
36243221 GCATATTTAT
*
36243231 TTTTTTAATATAATGTAATTA
1 TTTTTT-ATAT-ATGGAATTA
36243252 TTTTTT-TATATGGAATTA
1 TTTTTTATATATGGAATTA
36243270 TTTTTTATA
1 TTTTTTATA
36243279 ATCTATACGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 14 0.56
19 5 0.20
21 6 0.24
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.62
Consensus pattern (19 bp):
TTTTTTATATATGGAATTA
Found at i:36244248 original size:14 final size:15
Alignment explanation
Indices: 36244226--36244302 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
36244216 CAATCAAATA
36244226 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
36244240 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
36244255 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
36244275 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
36244289 ACGGAAAA-CATTTT
1 CCAGAAAATCATTTT
36244303 ACTGGCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 22 0.44
15 14 0.28
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:36244267 original size:20 final size:20
Alignment explanation
Indices: 36244242--36244281 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
36244232 AATATTTTCC
*
36244242 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
36244262 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
36244282 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:36244287 original size:34 final size:35
Alignment explanation
Indices: 36244230--36244296 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
36244220 CAAATACCAG
*
36244230 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
36244265 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
36244297 CATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:36244303 original size:14 final size:14
Alignment explanation
Indices: 36244265--36244304 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
36244255 ACAGAAAAGT
*
36244265 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
36244279 AAATCATTTTACGG
1 AAAACATTTTACAG
36244293 AAAACATTTTAC
1 AAAACATTTTAC
36244305 TGGCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:36253743 original size:20 final size:20
Alignment explanation
Indices: 36253715--36253755 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
36253705 ATTTTTTTAA
36253715 CTAAACCATTTGAATTAAAT
1 CTAAACCATTTGAATTAAAT
* *
36253735 CTAAGCCATTTTAATTAAAT
1 CTAAACCATTTGAATTAAAT
36253755 C
1 C
36253756 AAGAACAACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.37
Consensus pattern (20 bp):
CTAAACCATTTGAATTAAAT
Found at i:36257570 original size:22 final size:22
Alignment explanation
Indices: 36257536--36257579 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
36257526 TAGATTTGTG
* *
36257536 AAAATTTATTATAAAAATAATT
1 AAAATTCAATATAAAAATAATT
**
36257558 AAAATTCAATATATTAATAATT
1 AAAATTCAATATAAAAATAATT
36257580 TAAGTGAAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (22 bp):
AAAATTCAATATAAAAATAATT
Found at i:36265995 original size:21 final size:21
Alignment explanation
Indices: 36265969--36266011 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
36265959 TCCTAAGCGT
36265969 ACAAAGCATTGATTAGTTCAA
1 ACAAAGCATTGATTAGTTCAA
36265990 ACAAAGCATTGATTAGTTCAA
1 ACAAAGCATTGATTAGTTCAA
36266011 A
1 A
36266012 GAGTGAGATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.44, C:0.14, G:0.14, T:0.28
Consensus pattern (21 bp):
ACAAAGCATTGATTAGTTCAA
Found at i:36266922 original size:17 final size:17
Alignment explanation
Indices: 36266900--36266951 Score: 69
Period size: 17 Copynumber: 3.4 Consensus size: 17
36266890 GGCAACTTGC
36266900 GAGCTCTCAAGCTTGAT
1 GAGCTCTCAAGCTTGAT
36266917 GAGCTC-CAAG---G-T
1 GAGCTCTCAAGCTTGAT
36266929 GAGCTCTCAAGCTTGAT
1 GAGCTCTCAAGCTTGAT
36266946 GAGCTC
1 GAGCTC
36266952 GCATTTGTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
12 7 0.23
13 5 0.17
16 5 0.17
17 13 0.43
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25
Consensus pattern (17 bp):
GAGCTCTCAAGCTTGAT
Found at i:36268708 original size:24 final size:25
Alignment explanation
Indices: 36268676--36268722 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
36268666 AGATTAGTGG
*
36268676 CGACTCTATTTTTGTTTT-AAAAGT
1 CGACACTATTTTTGTTTTCAAAAGT
36268700 CGACACTATTTTTGTTTTCAAAA
1 CGACACTATTTTTGTTTTCAAAA
36268723 AGTGGTTTCG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.28, C:0.15, G:0.11, T:0.47
Consensus pattern (25 bp):
CGACACTATTTTTGTTTTCAAAAGT
Found at i:36270460 original size:144 final size:144
Alignment explanation
Indices: 36270200--36270485 Score: 457
Period size: 144 Copynumber: 2.0 Consensus size: 144
36270190 TATCGGGTCT
36270200 TCTCCGAAAATTACTCGCCACTAAAAGAGATAGTAGTTTCACTGAGGAGAGATGACATCTTAAAG
1 TCTCCGAAAATTACTCGCCACTAAAAGAGATAGTAGTTTCACTGAGGAGAGATGACATCTTAAAG
*
36270265 GAGAAGTGAATGGAAATTCTTCAGAATCTTCGAGAAGAGAACATCGAATGGAGAGCTCCTTGGTT
66 GAGAAGTGAATGGAAATTCTTCAGAATCTTCGAGAAGAGAACATCGAATGGAGAGCTCCATGGTT
36270330 ACTTCCGGATGACA
131 ACTTCCGGATGACA
* * * * * *
36270344 TCTCCGAGAATTACTCGCCACTTAAAGAGATAGTAGTTTTACTGAGGAGAGATGGCATTTTGGAA
1 TCTCCGAAAATTACTCGCCACTAAAAGAGATAGTAGTTTCACTGAGGAGAGATGACATCTT-AAA
* * * *
36270409 -GAGAAGTGGATGGCAATTCTTCAGAATCTTCTAGAAGAGGACATCGAATGGAGAGCTCCATGGT
65 GGAGAAGTGAATGGAAATTCTTCAGAATCTTCGAGAAGAGAACATCGAATGGAGAGCTCCATGGT
36270473 TACTTCCGGATGA
130 TACTTCCGGATGA
36270486 GGTCATATAT
Statistics
Matches: 130, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
144 128 0.98
145 2 0.02
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.26
Consensus pattern (144 bp):
TCTCCGAAAATTACTCGCCACTAAAAGAGATAGTAGTTTCACTGAGGAGAGATGACATCTTAAAG
GAGAAGTGAATGGAAATTCTTCAGAATCTTCGAGAAGAGAACATCGAATGGAGAGCTCCATGGTT
ACTTCCGGATGACA
Found at i:36280234 original size:45 final size:45
Alignment explanation
Indices: 36280120--36280499 Score: 163
Period size: 45 Copynumber: 9.0 Consensus size: 45
36280110 CTGAAGTCAC
* * *
36280120 AGTGGAATGAAGATAGCAAGTCTTATCTCCTTGAAGTTGCAATGG
1 AGTGGACTGAAGATAGCAAGTCTTATCTCCCTGAAGTTGCAGTGG
*** * * *
36280165 AACAGACTCAAGAAAGCAAGTCTTATCCCCCTGAAGTTGCAGTGG
1 AGTGGACTGAAGATAGCAAGTCTTATCTCCCTGAAGTTGCAGTGG
* * * *
36280210 GGTGGACTGAAGATGGCAAATCTTA-CTCCCTGAAGTTACAGTGG
1 AGTGGACTGAAGATAGCAAGTCTTATCTCCCTGAAGTTGCAGTGG
* * * * *
36280254 AGCGGA-T-----TA--AAGTCTTATATCTCTGAAGTTGTAGTAG
1 AGTGGACTGAAGATAGCAAGTCTTATCTCCCTGAAGTTGCAGTGG
** * *
36280291 AGCAGACTGAAGATGGCAAATCTTA-CTCCCTGAAGTTGC----G
1 AGTGGACTGAAGATAGCAAGTCTTATCTCCCTGAAGTTGCAGTGG
** * *
36280331 -GTGGA---AAG-TCAATAA-TCCTATCTCCCTAAAGTTGCAGTGG
1 AGTGGACTGAAGAT-AGCAAGTCTTATCTCCCTGAAGTTGCAGTGG
* * *
36280371 A---G-C---AGATTA--AAGTCTTATCTCTCTGAAGTTGTAGTAG
1 AGTGGACTGAAGA-TAGCAAGTCTTATCTCCCTGAAGTTGCAGTGG
** * * *
36280408 AGCAGACTGAAGAAAGCAAGTCTTGTCCCCCTGAAGTTGCAGTGG
1 AGTGGACTGAAGATAGCAAGTCTTATCTCCCTGAAGTTGCAGTGG
* ** ** *
36280453 GGCAGACTGATCATAGCAA-ACATTATCTCCCTGAAGTTGCAGTGG
1 AGTGGACTGAAGATAGCAAGTC-TTATCTCCCTGAAGTTGCAGTGG
36280498 AG
1 AG
36280500 CAGGTTGAAG
Statistics
Matches: 245, Mismatches: 60, Indels: 60
0.67 0.16 0.16
Matches are distributed among these distances:
35 5 0.02
36 27 0.11
37 42 0.17
38 4 0.02
39 4 0.02
40 3 0.01
41 1 0.00
43 3 0.01
44 36 0.15
45 120 0.49
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (45 bp):
AGTGGACTGAAGATAGCAAGTCTTATCTCCCTGAAGTTGCAGTGG
Found at i:36288082 original size:2 final size:2
Alignment explanation
Indices: 36288075--36288099 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
36288065 GAGAGCTTTT
36288075 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
36288100 TTTTTGCTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:36296258 original size:17 final size:17
Alignment explanation
Indices: 36296233--36296288 Score: 54
Period size: 17 Copynumber: 3.7 Consensus size: 17
36296223 AAATATAATA
*
36296233 AATCATAATAGTGTTTC
1 AATCCTAATAGTGTTTC
36296250 AATCCTAATA--GTTT-
1 AATCCTAATAGTGTTTC
36296264 --T--TAATAGTGTTTC
1 AATCCTAATAGTGTTTC
36296277 AATCCTAATAGT
1 AATCCTAATAGT
36296289 TTTGTCAGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 14
0.67 0.02 0.30
Matches are distributed among these distances:
10 5 0.16
12 5 0.16
15 5 0.16
17 16 0.52
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.43
Consensus pattern (17 bp):
AATCCTAATAGTGTTTC
Found at i:36296258 original size:27 final size:27
Alignment explanation
Indices: 36296228--36296286 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
36296218 ACTATAAATA
36296228 TAATAAATCATAATAGTGTTTCAATCC
1 TAATAAATCATAATAGTGTTTCAATCC
** **
36296255 TAATAGTTTTTAATAGTGTTTCAATCC
1 TAATAAATCATAATAGTGTTTCAATCC
36296282 TAATA
1 TAATA
36296287 GTTTTGTCAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.37, C:0.12, G:0.08, T:0.42
Consensus pattern (27 bp):
TAATAAATCATAATAGTGTTTCAATCC
Found at i:36296287 original size:27 final size:27
Alignment explanation
Indices: 36296238--36296291 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
36296228 TAATAAATCA
36296238 TAATAGTGTTTCAATCCTAATAGTTTT
1 TAATAGTGTTTCAATCCTAATAGTTTT
36296265 TAATAGTGTTTCAATCCTAATAGTTTT
1 TAATAGTGTTTCAATCCTAATAGTTTT
36296292 GTCAGTTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.48
Consensus pattern (27 bp):
TAATAGTGTTTCAATCCTAATAGTTTT
Found at i:36304660 original size:24 final size:24
Alignment explanation
Indices: 36304614--36304660 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
36304604 GCTTGCATTA
* *
36304614 ACACACATTCTAATCCACTAAATG
1 ACACACATTCTAAACAACTAAATG
36304638 ACACATCATTCTAAACAAC-AAAT
1 ACACA-CATTCTAAACAACTAAAT
36304661 TCTTTCCACG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.47, C:0.28, G:0.02, T:0.23
Consensus pattern (24 bp):
ACACACATTCTAAACAACTAAATG
Found at i:36305846 original size:29 final size:29
Alignment explanation
Indices: 36305802--36305859 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
36305792 CACGCCCGTA
36305802 TGGCAACCCCACACGCCCGTTTGCATACC
1 TGGCAACCCCACACGCCCGTTTGCATACC
*
36305831 TGGCAACCCCATACGCCCGTTTGCATACC
1 TGGCAACCCCACACGCCCGTTTGCATACC
36305860 CGTGTACTCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.21, C:0.43, G:0.17, T:0.19
Consensus pattern (29 bp):
TGGCAACCCCACACGCCCGTTTGCATACC
Found at i:36308048 original size:16 final size:16
Alignment explanation
Indices: 36307996--36308048 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
36307986 TGAACATAGC
*
36307996 TATTCTTAAACAATAGT
1 TATTC-TAAACAATAAT
* * *
36308013 TGTTCTAAATAATAAC
1 TATTCTAAACAATAAT
*
36308029 TATTCTAAACAACAAT
1 TATTCTAAACAATAAT
36308045 TATT
1 TATT
36308049 GCTCTGGAAG
Statistics
Matches: 28, Mismatches: 8, Indels: 1
0.76 0.22 0.03
Matches are distributed among these distances:
16 24 0.86
17 4 0.14
ACGTcount: A:0.43, C:0.13, G:0.04, T:0.40
Consensus pattern (16 bp):
TATTCTAAACAATAAT
Found at i:36313893 original size:58 final size:55
Alignment explanation
Indices: 36313830--36313952 Score: 131
Period size: 58 Copynumber: 2.1 Consensus size: 55
36313820 CGGCCCGGCC
36313830 TATTTT-TGTAATAAATACCAAAAATTTATTTTAAAAATTAAAAAAAGTATTTTAAAAA
1 TATTTTATGTAA-AAATACCAAAAA--TA-TTTAAAAATTAAAAAAAGTATTTTAAAAA
* *** *
36313888 TATTTTAAAATTTAAAAATATTTAAAATATTTAAAAATTTAAAAAAGTATTTTAAAAA
1 TATTTT---ATGTAAAAATACCAAAAATATTTAAAAATTAAAAAAAGTATTTTAAAAA
36313946 TATTTTA
1 TATTTTA
36313953 AAATTTAAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 11
0.78 0.07 0.15
Matches are distributed among these distances:
55 1 0.02
58 40 0.71
59 2 0.04
61 9 0.16
62 4 0.07
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (55 bp):
TATTTTATGTAAAAATACCAAAAATATTTAAAAATTAAAAAAAGTATTTTAAAAA
Found at i:36313946 original size:40 final size:40
Alignment explanation
Indices: 36313898--36313973 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
36313888 TATTTTAAAA
*
36313898 TTTAAAAATA-TTTAAAATATTTAAAAATTTAAAAAAGTAT
1 TTTAAAAATATTTTAAAAT-TTAAAAAATTTAAAAAAGTAT
*
36313938 TTTAAAAATATTTTAAAATTTAAAAAATTTTAAAAA
1 TTTAAAAATATTTTAAAATTTAAAAAATTTAAAAAA
36313974 TAAATATATT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
40 25 0.76
41 8 0.24
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.41
Consensus pattern (40 bp):
TTTAAAAATATTTTAAAATTTAAAAAATTTAAAAAAGTAT
Found at i:36313953 original size:58 final size:58
Alignment explanation
Indices: 36313859--36313972 Score: 203
Period size: 58 Copynumber: 2.0 Consensus size: 58
36313849 AAAAATTTAT
36313859 TTTAAAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATTT-AAAAATATTTAAAATA
1 TTTAAAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATTTAAAAAAT-TTTAAAATA
*
36313917 TTTAAAAATTTAAAAAAGTATTTTAAAAATATTTTAAAATTTAAAAAATTTTAAAA
1 TTTAAAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATTTAAAAAATTTTAAAA
36313973 ATAAATATAT
Statistics
Matches: 54, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
58 48 0.89
59 6 0.11
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (58 bp):
TTTAAAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATTTAAAAAATTTTAAAATA
Found at i:36313973 original size:9 final size:9
Alignment explanation
Indices: 36313878--36313974 Score: 81
Period size: 9 Copynumber: 10.2 Consensus size: 9
36313868 TAAAAAAAGT
36313878 ATTTTAAAA
1 ATTTTAAAA
*
36313887 ATATTTTAAA
1 AT-TTTAAAA
36313897 A-TTTAAAA
1 ATTTTAAAA
36313905 ATATTT-AAA
1 AT-TTTAAAA
36313914 ATATTTAAAA
1 AT-TTTAAAA
*
36313924 ATTTAAAAAA
1 ATTT-TAAAA
36313934 GTATTTTAAAA
1 --ATTTTAAAA
*
36313945 ATATTTTAAA
1 AT-TTTAAAA
*
36313955 ATTTAAAAA
1 ATTTTAAAA
36313964 ATTTTAAAA
1 ATTTTAAAA
36313973 AT
1 AT
36313975 AAATATATTT
Statistics
Matches: 72, Mismatches: 8, Indels: 16
0.75 0.08 0.17
Matches are distributed among these distances:
8 7 0.10
9 30 0.42
10 27 0.38
11 4 0.06
12 4 0.06
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (9 bp):
ATTTTAAAA
Found at i:36316505 original size:14 final size:15
Alignment explanation
Indices: 36316478--36316510 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
36316468 TTGATACAAA
*
36316478 ATTTTTATTTTTTAT
1 ATTTTTATTATTTAT
36316493 ATTTTTA-TATTTAT
1 ATTTTTATTATTTAT
36316507 ATTT
1 ATTT
36316511 AAAATAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (15 bp):
ATTTTTATTATTTAT
Found at i:36323300 original size:27 final size:25
Alignment explanation
Indices: 36323264--36323334 Score: 79
Period size: 27 Copynumber: 2.7 Consensus size: 25
36323254 AAATCTTTAA
36323264 TAAAAAATATAAAAATATTTATATAAT
1 TAAAAAATATAAAAATATTTA-A-AAT
* *
36323291 TAAAATATATAGTAAATTATTTAAAAT
1 TAAAAAATATA--AAAATATTTAAAAT
*
36323318 TAAAAAATATATAAATA
1 TAAAAAATATAAAAATA
36323335 CAGTTATGCA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
25 4 0.11
27 23 0.62
28 1 0.03
29 9 0.24
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (25 bp):
TAAAAAATATAAAAATATTTAAAAT
Found at i:36325173 original size:40 final size:40
Alignment explanation
Indices: 36325093--36325387 Score: 368
Period size: 40 Copynumber: 7.5 Consensus size: 40
36325083 ACCAGTTTGG
*
36325093 CACCCAGTGTCTTATCGAATTAATCCGAAGTAGTAAATTGA
1 CACCCAGTGTCTTATCGAA-TAATCCGAAGTAATAAATTGA
* *
36325134 CACCCAGTGTCTCATCGAATAATTCGAAGTAATAAATTGA
1 CACCCAGTGTCTTATCGAATAATCCGAAGTAATAAATTGA
** * *
36325174 CACCCAGTGTCTTATCGGTTAAACCGAAG---TAAATTGG
1 CACCCAGTGTCTTATCGAATAATCCGAAGTAATAAATTGA
* *
36325211 CACCCAGTGCCTTATCGAATTAATCCGAAGTAGTAAATTGA
1 CACCCAGTGTCTTATCGAA-TAATCCGAAGTAATAAATTGA
* *
36325252 CACCCAGTGTCTCATCGAATAATTCGAAGTAATAAATTGA
1 CACCCAGTGTCTTATCGAATAATCCGAAGTAATAAATTGA
** * *
36325292 CACCCAGTGTCTTATCGGTTAAACCGAAG---TAAATTGG
1 CACCCAGTGTCTTATCGAATAATCCGAAGTAATAAATTGA
*
36325329 CACCCAGTGCCTTATCGAATTAATCCGAAGTAATAAATTGA
1 CACCCAGTGTCTTATCGAA-TAATCCGAAGTAATAAATTGA
*
36325370 CACCCAGTGTCTCATCGA
1 CACCCAGTGTCTTATCGA
36325388 CTCAAAGTCG
Statistics
Matches: 215, Mismatches: 31, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
37 46 0.21
38 18 0.08
40 86 0.40
41 65 0.30
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (40 bp):
CACCCAGTGTCTTATCGAATAATCCGAAGTAATAAATTGA
Found at i:36325297 original size:118 final size:118
Alignment explanation
Indices: 36325089--36325387 Score: 580
Period size: 118 Copynumber: 2.5 Consensus size: 118
36325079 ACACACCAGT
*
36325089 TTGGCACCCAGTGTCTTATCGAATTAATCCGAAGTAGTAAATTGACACCCAGTGTCTCATCGAAT
1 TTGGCACCCAGTGCCTTATCGAATTAATCCGAAGTAGTAAATTGACACCCAGTGTCTCATCGAAT
36325154 AATTCGAAGTAATAAATTGACACCCAGTGTCTTATCGGTTAAACCGAAGTAAA
66 AATTCGAAGTAATAAATTGACACCCAGTGTCTTATCGGTTAAACCGAAGTAAA
36325207 TTGGCACCCAGTGCCTTATCGAATTAATCCGAAGTAGTAAATTGACACCCAGTGTCTCATCGAAT
1 TTGGCACCCAGTGCCTTATCGAATTAATCCGAAGTAGTAAATTGACACCCAGTGTCTCATCGAAT
36325272 AATTCGAAGTAATAAATTGACACCCAGTGTCTTATCGGTTAAACCGAAGTAAA
66 AATTCGAAGTAATAAATTGACACCCAGTGTCTTATCGGTTAAACCGAAGTAAA
*
36325325 TTGGCACCCAGTGCCTTATCGAATTAATCCGAAGTAATAAATTGACACCCAGTGTCTCATCGA
1 TTGGCACCCAGTGCCTTATCGAATTAATCCGAAGTAGTAAATTGACACCCAGTGTCTCATCGA
36325388 CTCAAAGTCG
Statistics
Matches: 179, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
118 179 1.00
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (118 bp):
TTGGCACCCAGTGCCTTATCGAATTAATCCGAAGTAGTAAATTGACACCCAGTGTCTCATCGAAT
AATTCGAAGTAATAAATTGACACCCAGTGTCTTATCGGTTAAACCGAAGTAAA
Found at i:36325378 original size:78 final size:78
Alignment explanation
Indices: 36325093--36325387 Score: 357
Period size: 78 Copynumber: 3.8 Consensus size: 78
36325083 ACCAGTTTGG
* * *
36325093 CACCCAGTGTCTTATCGAATTAATCCGAAGTAGTAAATTGACACCCAGTGTCTCATCGAATAATT
1 CACCCAGTGTCTTATCGAATTAATCCGAAGTAATAAATTGACACCCAGTGTCTCATCGATTAATC
36325158 CGAAGTAATAAATTGA
66 CGAAG---TAAATTGA
* * * * *
36325174 CACCCAGTGTCTTATCG-GTTAAACCGAAG---TAAATTGGCACCCAGTGCCTTATCGAATTAAT
1 CACCCAGTGTCTTATCGAATTAATCCGAAGTAATAAATTGACACCCAGTGTCTCATCG-ATTAAT
36325235 CCGAAGTAGTAAATTGA
65 CCG-A--AGTAAATTGA
* * * * *
36325252 CACCCAGTGTCTCATCGAA-TAATTCGAAGTAATAAATTGACACCCAGTGTCTTATCGGTTAAAC
1 CACCCAGTGTCTTATCGAATTAATCCGAAGTAATAAATTGACACCCAGTGTCTCATCGATTAATC
*
36325316 CGAAGTAAATTGG
66 CGAAGTAAATTGA
*
36325329 CACCCAGTGCCTTATCGAATTAATCCGAAGTAATAAATTGACACCCAGTGTCTCATCGA
1 CACCCAGTGTCTTATCGAATTAATCCGAAGTAATAAATTGACACCCAGTGTCTCATCGA
36325388 CTCAAAGTCG
Statistics
Matches: 184, Mismatches: 21, Indels: 21
0.81 0.09 0.09
Matches are distributed among these distances:
77 48 0.26
78 75 0.41
79 2 0.01
80 17 0.09
81 42 0.23
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (78 bp):
CACCCAGTGTCTTATCGAATTAATCCGAAGTAATAAATTGACACCCAGTGTCTCATCGATTAATC
CGAAGTAAATTGA
Found at i:36325590 original size:24 final size:24
Alignment explanation
Indices: 36325545--36325591 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
36325535 TATATATACC
36325545 AATTCAATCAATATAAATTCAATA
1 AATTCAATCAATATAAATTCAATA
36325569 AATTC-ATCACATACTAAA-TCAAT
1 AATTCAATCA-ATA-TAAATTCAAT
36325592 CCATTTCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 4 0.19
24 13 0.62
25 4 0.19
ACGTcount: A:0.51, C:0.17, G:0.00, T:0.32
Consensus pattern (24 bp):
AATTCAATCAATATAAATTCAATA
Found at i:36325878 original size:20 final size:20
Alignment explanation
Indices: 36325853--36325891 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
36325843 GTTTTTACAT
36325853 ATATTAATAAATTTATATAC
1 ATATTAATAAATTTATATAC
*
36325873 ATATTAATAAATTTTTATA
1 ATATTAATAAATTTATATA
36325892 TTTTAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (20 bp):
ATATTAATAAATTTATATAC
Found at i:36328826 original size:14 final size:14
Alignment explanation
Indices: 36328807--36328839 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
36328797 GAGGTAGACC
36328807 GGAGGTGGACCAGT
1 GGAGGTGGACCAGT
*
36328821 GGAGGTGGATCAGT
1 GGAGGTGGACCAGT
36328835 GGAGG
1 GGAGG
36328840 ACGGAGGTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.21, C:0.09, G:0.55, T:0.15
Consensus pattern (14 bp):
GGAGGTGGACCAGT
Found at i:36329888 original size:22 final size:22
Alignment explanation
Indices: 36329853--36329910 Score: 55
Period size: 22 Copynumber: 2.6 Consensus size: 22
36329843 AATATATATA
*
36329853 ATATATATACTTAA-ACATTAAG
1 ATATATAT-TTTAATACATTAAG
** *
36329875 ATATAATATTTTAATATTTTAAT
1 ATAT-ATATTTTAATACATTAAG
36329898 ATATATATTTTAA
1 ATATATATTTTAA
36329911 CTTTAAATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 17 0.57
23 13 0.43
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (22 bp):
ATATATATTTTAATACATTAAG
Found at i:36333556 original size:20 final size:20
Alignment explanation
Indices: 36333531--36333568 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
36333521 TTAGCCTAAA
36333531 AAATAAATGCTTTTAAATTG
1 AAATAAATGCTTTTAAATTG
**
36333551 AAATAAATTTTTTTAAAT
1 AAATAAATGCTTTTAAAT
36333569 ATTATCGTCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (20 bp):
AAATAAATGCTTTTAAATTG
Found at i:36333758 original size:64 final size:64
Alignment explanation
Indices: 36333657--36333790 Score: 223
Period size: 64 Copynumber: 2.1 Consensus size: 64
36333647 AATGAAACTA
* * *
36333657 GAGAAACAAGTGTCCAAATTTAAATGAATAATCTAGGTTCATTCTGGATTTATTTTTAATTTTT
1 GAGAAACAAGTGTCCAAATTTAAATCAACAATCTAGGTTCATTCTGGACTTATTTTTAATTTTT
*
36333721 GAGAAACAAGTGTTCAAATTTAAATCAACAATCTAGGTTCATTCTGGACTTATTTTTAATTTTT
1 GAGAAACAAGTGTCCAAATTTAAATCAACAATCTAGGTTCATTCTGGACTTATTTTTAATTTTT
*
36333785 AAGAAA
1 GAGAAA
36333791 TTTGAAAATT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 65 1.00
ACGTcount: A:0.37, C:0.10, G:0.13, T:0.40
Consensus pattern (64 bp):
GAGAAACAAGTGTCCAAATTTAAATCAACAATCTAGGTTCATTCTGGACTTATTTTTAATTTTT
Found at i:36334448 original size:45 final size:44
Alignment explanation
Indices: 36334399--36334486 Score: 122
Period size: 45 Copynumber: 2.0 Consensus size: 44
36334389 CACAAAATAG
*
36334399 AATGGAATGGAGGTGTAATAGCAAATCAACTGTTTGGTTGAATGT
1 AATGGAATAGAGGTGTAATAG-AAATCAACTGTTTGGTTGAATGT
* ***
36334444 AATGGAATAGAGGTGTAATAGTAATCTTGTGTTTGGTTGAATG
1 AATGGAATAGAGGTGTAATAGAAATCAACTGTTTGGTTGAATG
36334487 GAATAGAGGT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
44 18 0.47
45 20 0.53
ACGTcount: A:0.32, C:0.05, G:0.30, T:0.34
Consensus pattern (44 bp):
AATGGAATAGAGGTGTAATAGAAATCAACTGTTTGGTTGAATGT
Found at i:36334693 original size:17 final size:18
Alignment explanation
Indices: 36334652--36334686 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
36334642 TTATTATTAA
*
36334652 ATATATTTTAATTAAAAT
1 ATATAATTTAATTAAAAT
36334670 ATATAATTTAA-TAAAAT
1 ATATAATTTAATTAAAAT
36334687 TATTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
ATATAATTTAATTAAAAT
Found at i:36334752 original size:157 final size:158
Alignment explanation
Indices: 36334538--36334855 Score: 584
Period size: 157 Copynumber: 2.0 Consensus size: 158
36334528 TAAAATACCC
* *
36334538 TTAGCATAAATTTTTTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATT
1 TTAGCAGAAATTTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATT
*
36334603 ATTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAA
66 AATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAA
36334668 ATATATAATTTAATAAAATTATTAATAA
131 ATATATAATTTAATAAAATTATTAATAA
*
36334696 TTAGCAGAAA-TTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATT
1 TTAGCAGAAATTTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATT
36334760 AATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAA
66 AATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAA
*
36334825 ATATATAATTTAATAAAATTCTTAATAA
131 ATATATAATTTAATAAAATTATTAATAA
36334853 TTA
1 TTA
36334856 ATATTCTTAT
Statistics
Matches: 155, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
157 146 0.94
158 9 0.06
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (158 bp):
TTAGCAGAAATTTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATT
AATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAA
ATATATAATTTAATAAAATTATTAATAA
Found at i:36334830 original size:18 final size:17
Alignment explanation
Indices: 36334809--36334843 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
36334799 TTATTATTAA
*
36334809 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
36334827 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
36334844 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:36334926 original size:120 final size:121
Alignment explanation
Indices: 36334787--36335084 Score: 496
Period size: 120 Copynumber: 2.5 Consensus size: 121
36334777 ATTTAATCAT
*
36334787 ATTTAAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTGAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATA
* *
36334852 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATATTGTAAAAT-ATAA
66 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTAT-AAATGA-AA
*
36334909 A-TT-AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTGAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATA
36334972 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAATGAAA
66 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAATGAAA
* *
36335028 ATTTGAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 ATTTGAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
36335085 TAAAATAATT
Statistics
Matches: 167, Mismatches: 6, Indels: 8
0.92 0.03 0.04
Matches are distributed among these distances:
119 7 0.04
120 155 0.93
121 4 0.02
122 1 0.01
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.44
Consensus pattern (121 bp):
ATTTGAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATA
ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAATGAAA
Found at i:36334957 original size:14 final size:15
Alignment explanation
Indices: 36334908--36334959 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
36334898 GTAAAATATA
36334908 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
36334923 TATTAAATATATTAT
1 AATTAAATATATTAT
36334938 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
36334951 AATTTAATA
1 AATTAAATA
36334960 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:36335171 original size:24 final size:25
Alignment explanation
Indices: 36335125--36335172 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
36335115 TATGAATTTG
36335125 TATAATTTAAAATAATAATTATTACA
1 TATAATTTAAAAT-ATAATTATTACA
36335151 TATAATTTAATAAT-TAA-TATTA
1 TATAATTTAA-AATATAATTATTA
36335173 AATTTCATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 5 0.24
25 3 0.14
26 10 0.48
27 3 0.14
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (25 bp):
TATAATTTAAAATATAATTATTACA
Found at i:36335176 original size:92 final size:92
Alignment explanation
Indices: 36335080--36335308 Score: 227
Period size: 92 Copynumber: 2.5 Consensus size: 92
36335070 TGATTTAATA
* * *
36335080 AAATTT-AAAATAATT-GTAACTAATAAATTATATTTTATGAATTTGTATAATTTAAAATAA-TA
1 AAATTTCAAAA-AATTCGTAA-TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTA
*
36335142 ATTATTACATATAATTTAATAATTAATATT
64 A-TATTAAATATAATTTAATAATTAATATT
* * * * *
36335172 AAATTTCATAAAATTCTTGATAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAAT
1 AAATTTCAAAAAATTCGTAATAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAAT
* *
36335237 ATTAAATATAATTTAAT-AGTGATA-T
66 ATTAAATATAATTTAATAATTAATATT
* * * *
36335262 ATAATTTTATAAAATTCTTAATAATAAAATGT-TCTTATATGAATTTA
1 A-AATTTCAAAAAATTCGTAATAAT-AAAT-TATATTATATGAATTTA
36335309 CTAAAATCAA
Statistics
Matches: 118, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
90 2 0.02
91 26 0.22
92 81 0.69
93 9 0.08
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.45
Consensus pattern (92 bp):
AAATTTCAAAAAATTCGTAATAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAAT
ATTAAATATAATTTAATAATTAATATT
Found at i:36338945 original size:48 final size:47
Alignment explanation
Indices: 36338912--36339142 Score: 363
Period size: 48 Copynumber: 4.8 Consensus size: 47
36338902 ATTTCTTGAT
36338912 TTTTAATAAAATATTAAAGTCCTTATTTTAAATATTGATTAGTCCTTA
1 TTTTAATAAAATATTAAAGTCCTTATTTTAAATATTGATTA-TCCTTA
36338960 TTTTAATAAAATATTAAAGTCCTTATTTTAAATATTGATTAGTCCTTA
1 TTTTAATAAAATATTAAAGTCCTTATTTTAAATATTGATTA-TCCTTA
* *
36339008 TTTTAATAAAATATTAAAGTCCTTAATTTAATTATTGATTAGTCCTTA
1 TTTTAATAAAATATTAAAGTCCTTATTTTAAATATTGATTA-TCCTTA
* **
36339056 TTTTAATAAAATATTAAAGTCCTTAATTTATTTATTGATTAGTCCTTA
1 TTTTAATAAAATATTAAAGTCCTTATTTTAAATATTGATTA-TCCTTA
* *
36339104 TTTTAATGAAATATTAAAGTCCTTATTTTAATTATTGAT
1 TTTTAATAAAATATTAAAGTCCTTATTTTAAATATTGAT
36339143 GTAATTATTT
Statistics
Matches: 177, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 177 1.00
ACGTcount: A:0.37, C:0.08, G:0.06, T:0.49
Consensus pattern (47 bp):
TTTTAATAAAATATTAAAGTCCTTATTTTAAATATTGATTATCCTTA
Found at i:36338959 original size:23 final size:23
Alignment explanation
Indices: 36338929--36339109 Score: 161
Period size: 23 Copynumber: 7.6 Consensus size: 23
36338919 AAAATATTAA
36338929 AGTCCTTATTTTAAATATTGATT
1 AGTCCTTATTTTAAATATTGATT
* *
36338952 AGTCCTTATTTTAATAAAAT-ATT
1 AGTCCTTATTTTAA-ATATTGATT
36338975 AAAGTCCTTATTTTAAATATTGATT
1 --AGTCCTTATTTTAAATATTGATT
* *
36339000 AGTCCTTATTTTAATAAAAT-ATT
1 AGTCCTTATTTTAA-ATATTGATT
* *
36339023 AAAGTCCTTAATTTAATTATTGATT
1 --AGTCCTTATTTTAAATATTGATT
* *
36339048 AGTCCTTATTTTAATAAAAT-ATT
1 AGTCCTTATTTTAA-ATATTGATT
* **
36339071 AAAGTCCTTAATTTATTTATTGATT
1 --AGTCCTTATTTTAAATATTGATT
36339096 AGTCCTTATTTTAA
1 AGTCCTTATTTTAA
36339110 TGAAATATTA
Statistics
Matches: 125, Mismatches: 21, Indels: 24
0.74 0.12 0.14
Matches are distributed among these distances:
23 62 0.50
24 15 0.12
25 48 0.38
ACGTcount: A:0.35, C:0.09, G:0.07, T:0.49
Consensus pattern (23 bp):
AGTCCTTATTTTAAATATTGATT
Found at i:36339044 original size:96 final size:96
Alignment explanation
Indices: 36338912--36339142 Score: 408
Period size: 96 Copynumber: 2.4 Consensus size: 96
36338902 ATTTCTTGAT
*
36338912 TTTTAATAAAATATTAAAGTCCTTATTTTAAATATTGATTAGTCCTTATTTTAATAAAATATTAA
1 TTTTAATAAAATATTAAAGTCCTTATTTTAATTATTGATTAGTCCTTATTTTAATAAAATATTAA
*
36338977 AGTCCTTATTTTAAATATTGATTAGTCCTTA
66 AGTCCTTAATTTAAATATTGATTAGTCCTTA
*
36339008 TTTTAATAAAATATTAAAGTCCTTAATTTAATTATTGATTAGTCCTTATTTTAATAAAATATTAA
1 TTTTAATAAAATATTAAAGTCCTTATTTTAATTATTGATTAGTCCTTATTTTAATAAAATATTAA
**
36339073 AGTCCTTAATTTATTTATTGATTAGTCCTTA
66 AGTCCTTAATTTAAATATTGATTAGTCCTTA
*
36339104 TTTTAATGAAATATTAAAGTCCTTATTTTAATTATTGAT
1 TTTTAATAAAATATTAAAGTCCTTATTTTAATTATTGAT
36339143 GTAATTATTT
Statistics
Matches: 128, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 128 1.00
ACGTcount: A:0.37, C:0.08, G:0.06, T:0.49
Consensus pattern (96 bp):
TTTTAATAAAATATTAAAGTCCTTATTTTAATTATTGATTAGTCCTTATTTTAATAAAATATTAA
AGTCCTTAATTTAAATATTGATTAGTCCTTA
Found at i:36340356 original size:23 final size:23
Alignment explanation
Indices: 36340330--36340379 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
36340320 TAAACAAATT
36340330 CAATTTCCAGCAGAC-AATCAA-AA
1 CAATTTCCAG-A-ACAAATCAAGAA
36340353 CAATTTCCAGAACAAATCAAGAA
1 CAATTTCCAGAACAAATCAAGAA
36340376 CAAT
1 CAAT
36340380 ATCAAAACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
21 2 0.08
22 7 0.28
23 16 0.64
ACGTcount: A:0.50, C:0.24, G:0.08, T:0.18
Consensus pattern (23 bp):
CAATTTCCAGAACAAATCAAGAA
Found at i:36340388 original size:22 final size:22
Alignment explanation
Indices: 36340345--36340391 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
36340335 TCCAGCAGAC
* *
36340345 AATCAAAACAATTTCCAGAACA
1 AATCAAAACAATATCCAAAACA
36340367 AATCAAGAACAATAT-CAAAACA
1 AATCAA-AACAATATCCAAAACA
36340389 AAT
1 AAT
36340392 GCAACAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 15 0.68
23 7 0.32
ACGTcount: A:0.60, C:0.19, G:0.04, T:0.17
Consensus pattern (22 bp):
AATCAAAACAATATCCAAAACA
Found at i:36341142 original size:17 final size:17
Alignment explanation
Indices: 36341120--36341155 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
36341110 ACTCAAAGGG
36341120 AAATAAACAGCAATAGA
1 AAATAAACAGCAATAGA
36341137 AAATAAACAGCAATAGA
1 AAATAAACAGCAATAGA
36341154 AA
1 AA
36341156 CATGCAATCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.67, C:0.11, G:0.11, T:0.11
Consensus pattern (17 bp):
AAATAAACAGCAATAGA
Found at i:36351410 original size:3 final size:3
Alignment explanation
Indices: 36351402--36351444 Score: 77
Period size: 3 Copynumber: 14.3 Consensus size: 3
36351392 TGCGTCTTTA
*
36351402 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TCG TTG TTG TTG T
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG T
36351445 CGTTATTATT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.00, C:0.02, G:0.33, T:0.65
Consensus pattern (3 bp):
TTG
Found at i:36361621 original size:23 final size:23
Alignment explanation
Indices: 36361591--36361640 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
36361581 ATGTAAAATG
*
36361591 TTAAACTTCTCTTCTAACTATTT
1 TTAAACTTCTCTTCTAACCATTT
36361614 TTAAACTTCTCTTCTAACCATTT
1 TTAAACTTCTCTTCTAACCATTT
36361637 TTAA
1 TTAA
36361641 TAAACAAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.28, C:0.22, G:0.00, T:0.50
Consensus pattern (23 bp):
TTAAACTTCTCTTCTAACCATTT
Found at i:36362652 original size:41 final size:41
Alignment explanation
Indices: 36362607--36362757 Score: 257
Period size: 41 Copynumber: 3.7 Consensus size: 41
36362597 GCACTTAGCT
* *
36362607 TGCTAGACATAAAGTCTGAAATGTTTCACCGGCGTCAAGCC
1 TGCTAGACTTAAAGTCTGAAATGTTTCACCGGCATCAAGCC
*
36362648 TGCTAGACTTAAAGTCTGAAATGTTTCACTGGCATCAAGCC
1 TGCTAGACTTAAAGTCTGAAATGTTTCACCGGCATCAAGCC
*
36362689 TGCTAGACGTAAAGTCTGAAATGTTTCACCGGCATCAAGCC
1 TGCTAGACTTAAAGTCTGAAATGTTTCACCGGCATCAAGCC
*
36362730 TGCTAGACTTAAAGTCTAAAATGTTTCA
1 TGCTAGACTTAAAGTCTGAAATGTTTCA
36362758 TTGGCAATAA
Statistics
Matches: 103, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 103 1.00
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (41 bp):
TGCTAGACTTAAAGTCTGAAATGTTTCACCGGCATCAAGCC
Found at i:36373078 original size:6 final size:6
Alignment explanation
Indices: 36373071--36373100 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
36373061 TCTCATAAAG
*
36373071 GAAAAG GAAAAT GAAAAT GAAAAT GAAAAT
1 GAAAAT GAAAAT GAAAAT GAAAAT GAAAAT
36373101 TTTTAATTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.67, C:0.00, G:0.20, T:0.13
Consensus pattern (6 bp):
GAAAAT
Found at i:36376655 original size:59 final size:59
Alignment explanation
Indices: 36376563--36376674 Score: 188
Period size: 59 Copynumber: 1.9 Consensus size: 59
36376553 TTCTATAATA
*
36376563 AAAATTAGATCCATGGCACTTGATAGTCATGAGAGTAAAATTAGGAGAAAAAATTTGAT
1 AAAATTAGATCCATGGCACTTGATAGTCATGAGAGTAAAATTAGGACAAAAAATTTGAT
** *
36376622 AAAATTAGATCCATGGCACTTGATAGTTGTGAGAGTATAATTAGGACAAAAAA
1 AAAATTAGATCCATGGCACTTGATAGTCATGAGAGTAAAATTAGGACAAAAAA
36376675 AAAAAATAGA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
59 49 1.00
ACGTcount: A:0.44, C:0.09, G:0.21, T:0.27
Consensus pattern (59 bp):
AAAATTAGATCCATGGCACTTGATAGTCATGAGAGTAAAATTAGGACAAAAAATTTGAT
Found at i:36384259 original size:17 final size:17
Alignment explanation
Indices: 36384237--36384270 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
36384227 CCGCAATTCT
36384237 TGGAGGGAATCGACTGC
1 TGGAGGGAATCGACTGC
36384254 TGGAGGGAATCGACTGC
1 TGGAGGGAATCGACTGC
36384271 AAAGAATTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.18, G:0.41, T:0.18
Consensus pattern (17 bp):
TGGAGGGAATCGACTGC
Found at i:36389338 original size:17 final size:17
Alignment explanation
Indices: 36389316--36389351 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
36389306 AAGGAAGCCA
36389316 TAGCTCTCTTAGGTCTC
1 TAGCTCTCTTAGGTCTC
36389333 TAGCTCTCTTAGGTCTC
1 TAGCTCTCTTAGGTCTC
36389350 TA
1 TA
36389352 TTACGCTCCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.14, C:0.28, G:0.17, T:0.42
Consensus pattern (17 bp):
TAGCTCTCTTAGGTCTC
Found at i:36390922 original size:35 final size:35
Alignment explanation
Indices: 36390876--36390946 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
36390866 AATCTGCAAC
36390876 AGATGTTTAAATTAGATTTCAAGAACAAAAATTTA
1 AGATGTTTAAATTAGATTTCAAGAACAAAAATTTA
*
36390911 AGATGTTTAAATTAGATTTCAAGAACAAAATTTTA
1 AGATGTTTAAATTAGATTTCAAGAACAAAAATTTA
36390946 A
1 A
36390947 CATAGTTTCT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.48, C:0.06, G:0.11, T:0.35
Consensus pattern (35 bp):
AGATGTTTAAATTAGATTTCAAGAACAAAAATTTA
Found at i:36390934 original size:21 final size:21
Alignment explanation
Indices: 36390876--36390934 Score: 51
Period size: 21 Copynumber: 3.1 Consensus size: 21
36390866 AATCTGCAAC
36390876 AGATGTTTAAATTAGATTTCA
1 AGATGTTTAAATTAGATTTCA
**
36390897 AGA---ACAAA--A-ATTT-A
1 AGATGTTTAAATTAGATTTCA
36390911 AGATGTTTAAATTAGATTTCA
1 AGATGTTTAAATTAGATTTCA
36390932 AGA
1 AGA
36390935 ACAAAATTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 14
0.60 0.09 0.31
Matches are distributed among these distances:
14 4 0.15
15 4 0.15
16 1 0.04
17 3 0.11
18 3 0.11
19 1 0.04
20 4 0.15
21 7 0.26
ACGTcount: A:0.46, C:0.05, G:0.14, T:0.36
Consensus pattern (21 bp):
AGATGTTTAAATTAGATTTCA
Found at i:36394670 original size:18 final size:18
Alignment explanation
Indices: 36394649--36394683 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
36394639 CAGAATTCAG
*
36394649 CTCTTTTTCATTCTTTTT
1 CTCTCTTTCATTCTTTTT
*
36394667 CTCTCTTTCCTTCTTTT
1 CTCTCTTTCATTCTTTT
36394684 AGGAAGACAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.03, C:0.29, G:0.00, T:0.69
Consensus pattern (18 bp):
CTCTCTTTCATTCTTTTT
Found at i:36398312 original size:17 final size:16
Alignment explanation
Indices: 36398286--36398324 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
36398276 ATTTTTTATT
36398286 TTAATTGATATA-ATTA
1 TTAATTGATA-ACATTA
36398302 TTAAGTTGATAACATTA
1 TTAA-TTGATAACATTA
36398319 TTAATT
1 TTAATT
36398325 TTAAAATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.41, C:0.03, G:0.08, T:0.49
Consensus pattern (16 bp):
TTAATTGATAACATTA
Found at i:36400268 original size:6 final size:6
Alignment explanation
Indices: 36400259--36400285 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
36400249 GAATTGGAGG
36400259 TGAAGA TGAAGA TGAAGA TGAAGA TGA
1 TGAAGA TGAAGA TGAAGA TGAAGA TGA
36400286 TGTAGAGCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.33, T:0.19
Consensus pattern (6 bp):
TGAAGA
Found at i:36400274 original size:12 final size:12
Alignment explanation
Indices: 36400214--36400285 Score: 56
Period size: 12 Copynumber: 6.0 Consensus size: 12
36400204 CAGAAGAACG
*
36400214 AGATGAAGATCA
1 AGATGAAGATGA
* *
36400226 AGATCAAGATCA
1 AGATGAAGATGA
* *
36400238 AGATGGAGGTGGA
1 AGATGAAGAT-GA
* * *
36400251 A-TTGGAGGTGA
1 AGATGAAGATGA
36400262 AGATGAAGATGA
1 AGATGAAGATGA
36400274 AGATGAAGATGA
1 AGATGAAGATGA
36400286 TGTAGAGCCA
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
11 3 0.06
12 44 0.90
13 2 0.04
ACGTcount: A:0.43, C:0.04, G:0.35, T:0.18
Consensus pattern (12 bp):
AGATGAAGATGA
Found at i:36404160 original size:19 final size:20
Alignment explanation
Indices: 36404114--36404161 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
36404104 CTTATAATAG
36404114 GTATCGATATCTATTTACAA
1 GTATCGATATCTATTTACAA
* *
36404134 GGATCGATA-CT-TTTTCAGA
1 GTATCGATATCTATTTACA-A
36404153 GTATCGATA
1 GTATCGATA
36404162 AAAAGGCTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
18 5 0.21
19 11 0.46
20 8 0.33
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.38
Consensus pattern (20 bp):
GTATCGATATCTATTTACAA
Found at i:36404712 original size:12 final size:12
Alignment explanation
Indices: 36404695--36404731 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
36404685 GGCAGTGAAT
*
36404695 GGAGGAATGGGC
1 GGAGGAATGGGA
36404707 GGAGGAATGGGA
1 GGAGGAATGGGA
36404719 GGAGGAATAGGGA
1 GGAGGAAT-GGGA
36404732 AAAAGGAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 19 0.83
13 4 0.17
ACGTcount: A:0.32, C:0.03, G:0.57, T:0.08
Consensus pattern (12 bp):
GGAGGAATGGGA
Found at i:36408909 original size:43 final size:43
Alignment explanation
Indices: 36408861--36408949 Score: 160
Period size: 43 Copynumber: 2.1 Consensus size: 43
36408851 TAATTTGGAA
36408861 AATCCAGGATTAAATTGAAAAGACTAGTAAATTGTCAGACTCT
1 AATCCAGGATTAAATTGAAAAGACTAGTAAATTGTCAGACTCT
* *
36408904 AATCCAGGATTAAATTGAAAGGACTAGTAAATTGTTAGACTCT
1 AATCCAGGATTAAATTGAAAAGACTAGTAAATTGTCAGACTCT
36408947 AAT
1 AAT
36408950 GGGAGATTTG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (43 bp):
AATCCAGGATTAAATTGAAAAGACTAGTAAATTGTCAGACTCT
Found at i:36412775 original size:24 final size:24
Alignment explanation
Indices: 36412743--36412789 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
36412733 CCTGTTTTGC
36412743 TACATGCGAACCCTGTTATACTAA
1 TACATGCGAACCCTGTTATACTAA
*
36412767 TACATGCGAACCTTGTTATACTA
1 TACATGCGAACCCTGTTATACTA
36412790 TGTGCGAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.32
Consensus pattern (24 bp):
TACATGCGAACCCTGTTATACTAA
Found at i:36412804 original size:17 final size:17
Alignment explanation
Indices: 36412782--36412814 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
36412772 GCGAACCTTG
*
36412782 TTATACTATGTGCGAAT
1 TTATACCATGTGCGAAT
36412799 TTATACCATGTGCGAA
1 TTATACCATGTGCGAA
36412815 CCTATGTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.36
Consensus pattern (17 bp):
TTATACCATGTGCGAAT
Found at i:36415249 original size:49 final size:49
Alignment explanation
Indices: 36415188--36415294 Score: 124
Period size: 49 Copynumber: 2.2 Consensus size: 49
36415178 TACAGCCATA
* * *
36415188 GGTTCAACTATAACTAGGGCTCCCAGTTGATAGTGATTATGCAATCACG
1 GGTTCAAGTATAACTAGAGCTCCCAGTTGACAGTGATTATGCAATCACG
* ** * ***
36415237 GGTTCAAGTATAACTTGAGCTCTTAGTTGACAGTGGTTATGTGGTCACG
1 GGTTCAAGTATAACTAGAGCTCCCAGTTGACAGTGATTATGCAATCACG
36415286 GGTTCAAGT
1 GGTTCAAGT
36415295 TTCATGCCAC
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (49 bp):
GGTTCAAGTATAACTAGAGCTCCCAGTTGACAGTGATTATGCAATCACG
Found at i:36419278 original size:20 final size:20
Alignment explanation
Indices: 36419247--36419284 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
36419237 AATCACTACA
36419247 TTATAAATAAATT-TTTATT
1 TTATAAATAAATTATTTATT
36419266 TTATAATATAAATTATTTA
1 TTATAA-ATAAATTATTTA
36419285 AACATTTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 6 0.35
20 7 0.41
21 4 0.24
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
TTATAAATAAATTATTTATT
Found at i:36423624 original size:6 final size:6
Alignment explanation
Indices: 36423613--36423651 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
36423603 GTCATCGATC
36423613 TGATAT TGATAT TGATAT TGATAT TGATAT TGATAT TGA
1 TGATAT TGATAT TGATAT TGATAT TGATAT TGATAT TGA
36423652 AAGCATGTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.49
Consensus pattern (6 bp):
TGATAT
Found at i:36454130 original size:25 final size:24
Alignment explanation
Indices: 36454080--36454131 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
36454070 TTTATTTCTC
* *
36454080 AAAAATATTTTTTAATAAAATTTT
1 AAAAATATTTTTTAACAAAATATT
*
36454104 AAAAATATTTTTTGACAATAATATT
1 AAAAATATTTTTTAACAA-AATATT
36454129 AAA
1 AAA
36454132 TACTTAAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 16 0.67
25 8 0.33
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (24 bp):
AAAAATATTTTTTAACAAAATATT
Found at i:36454265 original size:16 final size:16
Alignment explanation
Indices: 36454203--36454264 Score: 99
Period size: 16 Copynumber: 3.9 Consensus size: 16
36454193 TTTGGTTCGC
36454203 TGTAATGGAATAGAAG
1 TGTAATGGAATAGAAG
*
36454219 TATAATGGAATAGAAG
1 TGTAATGGAATAGAAG
36454235 TGTAATGGAATAG-AG
1 TGTAATGGAATAGAAG
36454250 CTGTAATGGAATAGA
1 -TGTAATGGAATAGA
36454265 GGCGTAATAC
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
15 2 0.05
16 40 0.95
ACGTcount: A:0.44, C:0.02, G:0.29, T:0.26
Consensus pattern (16 bp):
TGTAATGGAATAGAAG
Found at i:36454271 original size:16 final size:16
Alignment explanation
Indices: 36454204--36454272 Score: 86
Period size: 16 Copynumber: 4.3 Consensus size: 16
36454194 TTGGTTCGCT
*
36454204 GTAATGGAATAGAAGT
1 GTAATGGAATAGAAGC
* *
36454220 ATAATGGAATAGAAGT
1 GTAATGGAATAGAAGC
36454236 GTAATGGAATAG-AGC
1 GTAATGGAATAGAAGC
*
36454251 TGTAATGGAATAGAGGC
1 -GTAATGGAATAGAAGC
36454268 GTAAT
1 GTAAT
36454273 ACTAATTCAA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
15 2 0.04
16 43 0.91
17 2 0.04
ACGTcount: A:0.42, C:0.03, G:0.30, T:0.25
Consensus pattern (16 bp):
GTAATGGAATAGAAGC
Found at i:36454272 original size:32 final size:32
Alignment explanation
Indices: 36454204--36454272 Score: 95
Period size: 32 Copynumber: 2.2 Consensus size: 32
36454194 TTGGTTCGCT
*
36454204 GTAATGGAATAGAAGTATAATGGAATAGAAGT
1 GTAATGGAATAGAAGTATAATGGAATAGAAGC
* *
36454236 GTAATGGAATAG-AGCTGTAATGGAATAGAGGC
1 GTAATGGAATAGAAG-TATAATGGAATAGAAGC
36454268 GTAAT
1 GTAAT
36454273 ACTAATTCAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
31 2 0.06
32 31 0.94
ACGTcount: A:0.42, C:0.03, G:0.30, T:0.25
Consensus pattern (32 bp):
GTAATGGAATAGAAGTATAATGGAATAGAAGC
Found at i:36454459 original size:3 final size:3
Alignment explanation
Indices: 36454416--36454440 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
36454406 GATGATGATG
36454416 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
36454441 AATTTTAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:36454571 original size:56 final size:57
Alignment explanation
Indices: 36454457--36454598 Score: 150
Period size: 56 Copynumber: 2.5 Consensus size: 57
36454447 AATAAGATTA
*
36454457 TTAATATAAATAATAAATAATTTAATCATATTTTAACATAATTATTATTAAATATAAT
1 TTAATA-AAATAATAAATAATTTAATAATATTTTAACATAATTATTATTAAATATAAT
* * * *
36454515 TTAATAAAA-AATATATAATTTAATAA-ATTTCTTAATATAATTATTCTTATAT-TAAT
1 TTAATAAAATAATAAATAATTTAATAATA-TT-TTAACATAATTATTATTAAATATAAT
* * *
36454571 TTACTAAAATCAT-AAT-ATATAATAATAT
1 TTAATAAAATAATAAATAATTTAATAATAT
36454599 AAAAATAATA
Statistics
Matches: 71, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
55 10 0.14
56 32 0.45
57 23 0.32
58 6 0.08
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (57 bp):
TTAATAAAATAATAAATAATTTAATAATATTTTAACATAATTATTATTAAATATAAT
Found at i:36457483 original size:13 final size:13
Alignment explanation
Indices: 36457465--36457492 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
36457455 AATTGGAGAT
36457465 TCTAAATCCACAA
1 TCTAAATCCACAA
36457478 TCTAAATCCACAA
1 TCTAAATCCACAA
36457491 TC
1 TC
36457493 AGCGAATTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.32, G:0.00, T:0.25
Consensus pattern (13 bp):
TCTAAATCCACAA
Found at i:36457621 original size:36 final size:36
Alignment explanation
Indices: 36457581--36457651 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
36457571 ACTGGTCAAC
*
36457581 AGGACTGGAATGCTCGCCTATTCATCCTGGTGGAAT
1 AGGACTGGAATGCTCGCCTATTCATCCAGGTGGAAT
36457617 AGGACTGGAATGCTCGCCTATTCATCCAGGTGGAA
1 AGGACTGGAATGCTCGCCTATTCATCCAGGTGGAA
36457652 ATTAAATTCT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (36 bp):
AGGACTGGAATGCTCGCCTATTCATCCAGGTGGAAT
Found at i:36458091 original size:19 final size:17
Alignment explanation
Indices: 36458055--36458100 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
36458045 AAATGGAGAA
*
36458055 AAGAAAAAAAACGTGAG
1 AAGAAAAGAAACGTGAG
36458072 AAGAAAAGAAACGTACGAG
1 AAGAAAAGAAACGT--GAG
*
36458091 AATAAAAGAA
1 AAGAAAAGAA
36458101 GCAGAAATCG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 13 0.52
19 12 0.48
ACGTcount: A:0.65, C:0.07, G:0.22, T:0.07
Consensus pattern (17 bp):
AAGAAAAGAAACGTGAG
Found at i:36458400 original size:17 final size:16
Alignment explanation
Indices: 36458370--36458424 Score: 101
Period size: 16 Copynumber: 3.4 Consensus size: 16
36458360 ATAGTATAAG
36458370 GGTGTATTGGATTAGA
1 GGTGTATTGGATTAGA
36458386 GGTGTATTGGGATTAGA
1 GGTGTATT-GGATTAGA
36458403 GGTGTATTGGATTAGA
1 GGTGTATTGGATTAGA
36458419 GGTGTA
1 GGTGTA
36458425 ATAGCTAATC
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
16 22 0.58
17 16 0.42
ACGTcount: A:0.24, C:0.00, G:0.40, T:0.36
Consensus pattern (16 bp):
GGTGTATTGGATTAGA
Found at i:36458489 original size:44 final size:45
Alignment explanation
Indices: 36458405--36458495 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
36458395 GGATTAGAGG
* * *
36458405 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
36458450 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
36458494 TG
1 TG
36458496 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:36458747 original size:157 final size:157
Alignment explanation
Indices: 36458547--36458863 Score: 557
Period size: 157 Copynumber: 2.0 Consensus size: 157
36458537 TAGAATACCC
36458547 TTAGCATAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCATAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
* * * *
36458612 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAATA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAA-A
36458677 ATATATAATTTAATAAAATTCTT-ATAA
130 ATATATAATTTAATAAAATTCTTAATAA
*
36458704 TTAGCA-AAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATT
1 TTAGCATAAAA-TTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATT
36458768 AATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAA
65 AATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAA
36458833 ATATATAATTTAATAAAATTCTTAATAA
130 ATATATAATTTAATAAAATTCTTAATAA
36458861 TTA
1 TTA
36458864 ATATTCTTAT
Statistics
Matches: 153, Mismatches: 5, Indels: 4
0.94 0.03 0.02
Matches are distributed among these distances:
156 28 0.18
157 125 0.82
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (157 bp):
TTAGCATAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
TATATAATTTAATAAAATTCTTAATAA
Found at i:36458834 original size:16 final size:16
Alignment explanation
Indices: 36458797--36458838 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
36458787 TTAATCATAT
*
36458797 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
36458813 TT-AAATATATTATAA
1 TTAAAATATATTATAA
36458828 TTAAAATATAT
1 TTAAAATATAT
36458839 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:36458845 original size:14 final size:15
Alignment explanation
Indices: 36458806--36458847 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
36458796 TTTAAACATA
*
36458806 ATTATTATTAAATAT
1 ATTATAATTAAATAT
36458821 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
36458835 A-TATAATTTAATA
1 ATTATAATTAAATA
36458848 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:36458965 original size:14 final size:15
Alignment explanation
Indices: 36458926--36458967 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
36458916 AAGTAACATA
*
36458926 ATTATTATTAAATAT
1 ATTATAATTAAATAT
36458941 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
36458955 A-TATAATTTAATA
1 ATTATAATTAAATA
36458968 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:36459085 original size:14 final size:15
Alignment explanation
Indices: 36459046--36459087 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
36459036 AAGTAACATA
*
36459046 ATTATTATTAAATAT
1 ATTATAATTAAATAT
36459061 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
36459075 A-TATAATTTAATA
1 ATTATAATTAAATA
36459088 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:36459223 original size:120 final size:120
Alignment explanation
Indices: 36458800--36459212 Score: 740
Period size: 120 Copynumber: 3.4 Consensus size: 120
36458790 ATCATATTTA
36458800 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
36458865 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAAGT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAAGT
36458920 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
36458985 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAAGT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAAGT
36459040 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* * *
36459105 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGA-AAATTT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAA-GT
* * *
36459160 GAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 -AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
36459213 TAAAATAATT
Statistics
Matches: 285, Mismatches: 6, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
119 3 0.01
120 280 0.98
121 2 0.01
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAAGT
Found at i:36462755 original size:6 final size:6
Alignment explanation
Indices: 36462746--36462774 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
36462736 TTGATGTTGG
36462746 GAGGGA GAGGGA GAGGGA GAGGGA GAGGG
1 GAGGGA GAGGGA GAGGGA GAGGGA GAGGG
36462775 TGGGGAGAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.69, T:0.00
Consensus pattern (6 bp):
GAGGGA
Found at i:36465002 original size:7 final size:7
Alignment explanation
Indices: 36464990--36465015 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
36464980 TAGTCGATTG
36464990 GTATTTA
1 GTATTTA
36464997 GTATTTA
1 GTATTTA
36465004 GTATTTA
1 GTATTTA
36465011 GTATT
1 GTATT
36465016 ATGTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:36465699 original size:18 final size:18
Alignment explanation
Indices: 36465663--36465705 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
36465653 TGCCAAGTGC
* * *
36465663 GTATCCTAGCCTTTTTAT
1 GTATCCTAACCCTTATAT
36465681 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
36465699 GTTTCCT
1 GTATCCT
36465706 TTTTCGAGTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.19, C:0.26, G:0.09, T:0.47
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:36466326 original size:21 final size:21
Alignment explanation
Indices: 36466264--36466825 Score: 637
Period size: 21 Copynumber: 26.4 Consensus size: 21
36466254 CCCTAACTCT
*
36466264 AACCCTAACCTTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
** *
36466285 ATTCCTAAACTCTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAA
* * *
36466307 AAACCTAATCCTTAATTTAAA
1 AACCCTAACCCTTAACTTAAA
*
36466328 AACCCTAAACCCTTAACCTAAA
1 AACCCT-AACCCTTAACTTAAA
* * *
36466350 AAACTTAACCCTTAACCTAAA
1 AACCCTAACCCTTAACTTAAA
* *
36466371 AATCATAAACCCTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAA
** *
36466393 AACCCTAAAACTTAATTTAAA
1 AACCCTAACCCTTAACTTAAA
36466414 AACCCTAACCCTTAACTT-AA
1 AACCCTAACCCTTAACTTAAA
*
36466434 ACCCCTAAACCCTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAA
*
36466456 AACCCTAAACCTTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAA
** *
36466478 AATTCTAAACCTTTAACTT-AA
1 AACCCT-AACCCTTAACTTAAA
36466499 AACCCTAAACCCTTAACTT-AA
1 AACCCT-AACCCTTAACTTAAA
*
36466520 AACCCTAAATCCTTAACTT-AA
1 AACCCT-AACCCTTAACTTAAA
*
36466541 AACTCTAACCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
* *
36466562 AACCTTAAACCTTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAA
*
36466584 AACCTTAACCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
*
36466605 AACCATAAACCCTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAA
**
36466627 AAATCTAACCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
* *
36466648 AATCCTAACACTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
* *
36466669 AACCCTAACCTTTAATTTAAAA
1 AACCCTAACCCTTAACTT-AAA
36466691 AACCCTAACCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
*
36466712 AACCCTAACCATTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
*
36466733 AACCCTAACCCTTAGCTTAAA
1 AACCCTAACCCTTAACTTAAA
*
36466754 AACTCTAAACCCTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAA
* *
36466776 AATCGTAACCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
*
36466797 AACCCTAACCTTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
36466818 AACCCTAA
1 AACCCTAA
36466826 TCGTAACCCT
Statistics
Matches: 466, Mismatches: 65, Indels: 20
0.85 0.12 0.04
Matches are distributed among these distances:
20 18 0.04
21 284 0.61
22 164 0.35
ACGTcount: A:0.45, C:0.27, G:0.00, T:0.27
Consensus pattern (21 bp):
AACCCTAACCCTTAACTTAAA
Found at i:36466327 original size:43 final size:43
Alignment explanation
Indices: 36466267--36466825 Score: 595
Period size: 43 Copynumber: 13.1 Consensus size: 43
36466257 TAACTCTAAC
* ** *
36466267 CCTAACCTTTAACTTAAAATTCCTAAACTCTTAACTTAAAAAA
1 CCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAAA
* * *
36466310 CCTAATCCTTAATTTAAAAACCCTAAACCCTTAACCTAAAAAA
1 CCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAAA
* * * * *
36466353 CTTAACCCTTAACCTAAAAATCATAAACCCTTAACTTAAAAAC
1 CCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAAA
** * **
36466396 CCTAAAACTTAATTTAAAAACCCT-AACCCTTAACTT-AAACC
1 CCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAAA
* *
36466437 CCTAAACCCTTAACTTAAAAACCCTAAACCTTTAACTTAAAAAT
1 CCT-AACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAAA
* * *
36466481 TCTAAACCTTTAACTT-AAAACCCTAAACCCTTAACTT-AAAAC
1 CCT-AACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAAA
* *
36466523 CCTAAATCCTTAACTT-AAAACTCT-AACCCTTAACTT-AAAAA
1 CCT-AACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAAA
* *
36466564 CCTTAAACCTTTAACTTAAAAA-CCTTAACCCTTAACTT-AAAAA
1 CC-T-AACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAAA
** *
36466607 CCATAAACCCTTAACTTAAAAAATCT-AACCCTTAACTTAAAAAT
1 CC-T-AACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAAA
* * *
36466651 CCTAACACTTAACTTAAAAACCCT-AACCTTTAATTTAAAAAA
1 CCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAAA
* *
36466693 CCCTAACCCTTAACTTAAAAACCCT-AACCATTAACTTAAAAAC
1 -CCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAAA
* * *
36466736 CCTAACCCTTAGCTTAAAAACTCTAAACCCTTAACTTAAAAAT
1 CCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAAA
* * *
36466779 CGTAACCCTTAACTTAAAAACCCT-AACCTTTAACTTAAAAAC
1 CCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAAA
36466821 CCTAA
1 CCTAA
36466826 TCGTAACCCT
Statistics
Matches: 441, Mismatches: 65, Indels: 21
0.84 0.12 0.04
Matches are distributed among these distances:
41 25 0.06
42 143 0.32
43 248 0.56
44 25 0.06
ACGTcount: A:0.45, C:0.27, G:0.00, T:0.28
Consensus pattern (43 bp):
CCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAAA
Found at i:36466833 original size:27 final size:26
Alignment explanation
Indices: 36466776--36466852 Score: 92
Period size: 27 Copynumber: 3.1 Consensus size: 26
36466766 TTAACTTAAA
36466776 AATCGTAACCCTTAACTTAAAAA-CC
1 AATCGTAACCCTTAACTTAAAAACCC
*
36466801 ---C-TAACCTTTAACTTAAAAACCC
1 AATCGTAACCCTTAACTTAAAAACCC
36466823 TAATCGTAACCCTTAACTTAAAAACACC
1 -AATCGTAACCCTTAACTTAAAAAC-CC
36466851 AA
1 AA
36466853 AACCCTAATC
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
21 17 0.40
22 3 0.07
26 1 0.02
27 20 0.47
28 2 0.05
ACGTcount: A:0.44, C:0.29, G:0.03, T:0.25
Consensus pattern (26 bp):
AATCGTAACCCTTAACTTAAAAACCC
Found at i:36466838 original size:64 final size:64
Alignment explanation
Indices: 36466264--36466825 Score: 661
Period size: 64 Copynumber: 8.8 Consensus size: 64
36466254 CCCTAACTCT
* ** * * * *
36466264 AACCCTAACCTTTAACTTAAAATTCCTAAACTCTTAACTTAAAAAACCT-AATCCTTAATTTAAA
1 AACCCTAACCCTTAACTTAAAAACCCT-AACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* * * * * *
36466328 AACCCTAAACCCTTAACCTAAAAAACTTAACCCTTAACCTAAAAATCATAAACCCTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
** * *
36466393 AACCCTAAAACTTAATTTAAAAACCCTAACCCTTAACTT-AAACCCCTAAACCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* ** *
36466456 AACCCTAAACCTTTAACTTAAAAATTCTAAACCTTTAACTT-AAAACCCTAAACCCTTAACTT-A
1 AACCCT-AACCCTTAACTTAAAAACCCT-AACCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
36466519 A
64 A
* * * *
36466520 AACCCTAAATCCTTAACTT-AAAACTCTAACCCTTAACTTAAAAACCTTAAACCTTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* * **
36466584 AACCTTAACCCTTAACTTAAAAACCATAAACCCTTAACTTAAAAAATCT-AACCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAAAACCCT-AACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* * * *
36466648 AATCCTAACACTTAACTTAAAAACCCTAACCTTTAATTTAAAAAACCCT-AACCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTT-AAAAACCCTAAACCCTTAACTTAAA
* * *
36466712 AACCCTAACCATTAACTTAAAAACCCTAACCCTTAGCTTAAAAACTCTAAACCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* * *
36466776 AATCGTAACCCTTAACTTAAAAACCCTAACCTTTAACTTAAAAACCCTAA
1 AACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAA
36466826 TCGTAACCCT
Statistics
Matches: 424, Mismatches: 64, Indels: 20
0.83 0.13 0.04
Matches are distributed among these distances:
62 11 0.03
63 82 0.19
64 247 0.58
65 84 0.20
ACGTcount: A:0.45, C:0.27, G:0.00, T:0.27
Consensus pattern (64 bp):
AACCCTAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
Found at i:36467044 original size:112 final size:112
Alignment explanation
Indices: 36466894--36467100 Score: 360
Period size: 112 Copynumber: 1.8 Consensus size: 112
36466884 AACCTAACTC
* *
36466894 TAATATGATATAATTTGATAAATTTACTAACAATTAATACAATTAACAATTAATGATTTGACTAA
1 TAATATGATATAATATGATAAATTTACTAACAATTAATACAATTAACAATTAATAATTTGACTAA
*
36466959 CAAAATGTTAGATTTTACAAAATGTTTTGACTGGTACTAACAATTAA
66 CAAAATGTTAGATTTTACAAAATCTTTTGACTGGTACTAACAATTAA
* * *
36467006 TAATTTGATATAATATGATAATTTTACTAACAATTAATACAATTAACAATTAATAATTTTACTAA
1 TAATATGATATAATATGATAAATTTACTAACAATTAATACAATTAACAATTAATAATTTGACTAA
36467071 CAAAATGTTAGATTTTACAAAATCTTTTGA
66 CAAAATGTTAGATTTTACAAAATCTTTTGA
36467101 TTGATACAAA
Statistics
Matches: 89, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
112 89 1.00
ACGTcount: A:0.45, C:0.09, G:0.07, T:0.39
Consensus pattern (112 bp):
TAATATGATATAATATGATAAATTTACTAACAATTAATACAATTAACAATTAATAATTTGACTAA
CAAAATGTTAGATTTTACAAAATCTTTTGACTGGTACTAACAATTAA
Done.