Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53248092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1300000 characters in sequence are not A, C, G, or T
File 118 of 175
Found at i:37174142 original size:3 final size:3
Alignment explanation
Indices: 37174134--37174170 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
37174124 GCTTCCTTTG
37174134 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
37174171 TGCTTTCTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:37174886 original size:54 final size:54
Alignment explanation
Indices: 37174803--37174939 Score: 161
Period size: 54 Copynumber: 2.5 Consensus size: 54
37174793 AAAGCTTGGT
* *
37174803 TTCACTAAAAAGTGAGCTTGTGTGCTTGAAGAGGCAAAACCTATAAAGGCTT-AA
1 TTCACTAAAAAGTGATC-TATGTGCTTGAAGAGGCAAAACCTATAAAGGCTTGAA
* ** *
37174857 CTTCACTAAAATGTGATCTATGTGCTTGAAGAGGTTAGACCTATAAAGGCTTGAA
1 -TTCACTAAAAAGTGATCTATGTGCTTGAAGAGGCAAAACCTATAAAGGCTTGAA
*
37174912 TTCAGTAAAAAGTGAGTC-ATCGTGCTTG
1 TTCACTAAAAAGTGA-TCTAT-GTGCTTG
37174940 GAAAGTCTTG
Statistics
Matches: 71, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
54 45 0.63
55 26 0.37
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.29
Consensus pattern (54 bp):
TTCACTAAAAAGTGATCTATGTGCTTGAAGAGGCAAAACCTATAAAGGCTTGAA
Found at i:37184943 original size:19 final size:19
Alignment explanation
Indices: 37184921--37184963 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
37184911 AAAAAATTAG
*
37184921 AAAATTAAAAAAATATTTT
1 AAAATTAAAAAAATATTCT
* *
37184940 AAAAATAAAAAAGTATTCT
1 AAAATTAAAAAAATATTCT
37184959 AAAAT
1 AAAAT
37184964 ATTTTTAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (19 bp):
AAAATTAAAAAAATATTCT
Found at i:37187905 original size:21 final size:20
Alignment explanation
Indices: 37187879--37187921 Score: 77
Period size: 21 Copynumber: 2.1 Consensus size: 20
37187869 TAATTTAAAT
37187879 TTGTAAGACTTCAATATTATA
1 TTGTAAGACTTCAATATT-TA
37187900 TTGTAAGACTTCAATATTTA
1 TTGTAAGACTTCAATATTTA
37187920 TT
1 TT
37187922 CGAAATTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.47
Consensus pattern (20 bp):
TTGTAAGACTTCAATATTTA
Found at i:37188417 original size:38 final size:39
Alignment explanation
Indices: 37188350--37188424 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 39
37188340 TTTTAATCAT
37188350 ATAGTTGCTGTTAACTCATTTAATTTTTTTTTATATCAAC
1 ATAGTTGCTGTTAACTCATTTAA-TTTTTTTTATATCAAC
37188390 ATAGTTGCTGTTAACTCATTTAA-TTTTTTTATATC
1 ATAGTTGCTGTTAACTCATTTAATTTTTTTTATATC
37188425 GACTTGGGGG
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
38 12 0.34
40 23 0.66
ACGTcount: A:0.27, C:0.12, G:0.08, T:0.53
Consensus pattern (39 bp):
ATAGTTGCTGTTAACTCATTTAATTTTTTTTATATCAAC
Found at i:37188641 original size:56 final size:55
Alignment explanation
Indices: 37188512--37188681 Score: 226
Period size: 56 Copynumber: 3.1 Consensus size: 55
37188502 ATTGTATGTT
*
37188512 TTTTGTAATCGTGCCTATCTGACAG-GCGCCAATCAAATTTTTATATTAAAAAA-A--A
1 TTTT-TAATCGCGCCTATCTGACAGAGCG--AATC-AATTTTTATATTAAAAAATATTA
*
37188567 -TTTTAATCGCGCCTATCTGACAAATGCGAATCAATTTTTATATTAAAAAATATTA
1 TTTTTAATCGCGCCTATCTGACAGA-GCGAATCAATTTTTATATTAAAAAATATTA
37188622 TTTTTAATCGCGCCTATCTGACAGGAGCGAATCAATTTTTATATTAAAAAATATT-
1 TTTTTAATCGCGCCTATCTGACA-GAGCGAATCAATTTTTATATTAAAAAATATTA
37188677 TTTTT
1 TTTTT
37188682 GTTTAAATAA
Statistics
Matches: 105, Mismatches: 3, Indels: 14
0.86 0.02 0.11
Matches are distributed among these distances:
52 18 0.17
53 23 0.22
54 3 0.03
55 9 0.09
56 51 0.49
57 1 0.01
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.39
Consensus pattern (55 bp):
TTTTTAATCGCGCCTATCTGACAGAGCGAATCAATTTTTATATTAAAAAATATTA
Found at i:37188686 original size:24 final size:24
Alignment explanation
Indices: 37188659--37188724 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
37188649 CGAATCAATT
*
37188659 TTTATATTAAAAAATATTTTTTTG
1 TTTATATTAAAAAATATTTTTTTA
* * *
37188683 TTTA-AATAAAATATTAATTTTTTA
1 TTTATATTAAAA-AATATTTTTTTA
*
37188707 TTTTTATT-AAAAATATTT
1 TTTATATTAAAAAATATTT
37188725 AAATATATAT
Statistics
Matches: 32, Mismatches: 8, Indels: 5
0.71 0.18 0.11
Matches are distributed among these distances:
23 11 0.34
24 19 0.59
25 2 0.06
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (24 bp):
TTTATATTAAAAAATATTTTTTTA
Found at i:37189106 original size:18 final size:18
Alignment explanation
Indices: 37189045--37189093 Score: 98
Period size: 18 Copynumber: 2.7 Consensus size: 18
37189035 AGGCATTCTT
37189045 CTCCCTTCATCCAGTAAG
1 CTCCCTTCATCCAGTAAG
37189063 CTCCCTTCATCCAGTAAG
1 CTCCCTTCATCCAGTAAG
37189081 CTCCCTTCATCCA
1 CTCCCTTCATCCA
37189094 TTCTTCTCCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.20, C:0.43, G:0.08, T:0.29
Consensus pattern (18 bp):
CTCCCTTCATCCAGTAAG
Found at i:37189113 original size:18 final size:19
Alignment explanation
Indices: 37189038--37189118 Score: 62
Period size: 18 Copynumber: 4.5 Consensus size: 19
37189028 AGCTCTCAGG
37189038 CATT-CTTCTCCCTTCATC
1 CATTACTTCTCCCTTCATC
* **
37189056 CAGTA-AGCTCCCTTCATC
1 CATTACTTCTCCCTTCATC
* **
37189074 CAGTA-AGCTCCCTTCATC
1 CATTACTTCTCCCTTCATC
* *
37189092 CATT-CTTCTCCCTTCCTT
1 CATTACTTCTCCCTTCATC
37189110 CATTACTTC
1 CATTACTTC
37189119 AAATTTTCGT
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
18 48 0.92
19 4 0.08
ACGTcount: A:0.16, C:0.41, G:0.05, T:0.38
Consensus pattern (19 bp):
CATTACTTCTCCCTTCATC
Found at i:37193314 original size:132 final size:132
Alignment explanation
Indices: 37193073--37193768 Score: 946
Period size: 132 Copynumber: 5.3 Consensus size: 132
37193063 GAATAGACCA
* *
37193073 TTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGACGAATCTTACC
1 TTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATC
* * * *
37193138 TTCCCAAAATAGTGAAGAAGCAGATTTAAGTCATTAGTCTTATCTCCCTGAGCAGCAGTGGAGTA
66 TTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAGCAGCAGTGGAGTA
37193203 GG
131 GG
* * * *
37193205 TTGAAGATTGCAGATCTTGTCTCCCTAAGTAGTAGCGGAGCAGATCAAAGACGGCGAATCTTATC
1 TTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATC
*
37193270 TTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCTCTGAGCAGCAGTGGAGTA
66 TTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAGCAGCAGTGGAGTA
37193335 GG
131 GG
* * *
37193337 TTGAAGATTGCAGATCCTGTCTCCCTAAGCAGTAACGGAGCAGATCGAAGACGACGAATCTTATC
1 TTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATC
* *
37193402 TTCCCAAGATAGTGGAGAAGCAAATTTAAGCCATTGGTCCTATCTCCCTGAGCAGCAGTGGAGTA
66 TTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAGCAGCAGTGGAGTA
37193467 GG
131 GG
* * * *
37193469 TTGAAGAATGTAGATACTGTCTCCCTAAGCAGTAGTGGAGCAGATC----A-TG-G-ATCTTATC
1 TTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATC
* * * * * * *
37193527 TTCTCAAGGTAGTAGGA-AAGCAAATTTAAGCC--T-CTCCTATTTCTCTGAGCAGTAGTGGAGT
66 TTCCCAAGATAGT-GGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAGCAGCAGTGGAGT
37193588 AGG
130 AGG
* * *
37193591 TTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGGTCGAGGACGGCAAATCTTATC
1 TTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATC
* * * ***
37193656 TTCCTAAGATAGTAGTGAAGCAGATTTAAGCCACCGGTCCTATCTCCCTGAGCAGCAGTGGAGTA
66 TTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAGCAGCAGTGGAGTA
37193721 GG
131 GG
* * * *
37193723 TTGAATAATGTAGATACTGTCTCCCTAAGCAGTAGTGGAGCAGATC
1 TTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGATC
37193769 ATGGATCTTA
Statistics
Matches: 498, Mismatches: 54, Indels: 24
0.86 0.09 0.04
Matches are distributed among these distances:
122 69 0.14
123 1 0.00
125 34 0.07
126 5 0.01
127 1 0.00
128 2 0.00
129 32 0.06
132 354 0.71
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (132 bp):
TTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATC
TTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAGCAGCAGTGGAGTA
GG
Found at i:37193623 original size:44 final size:44
Alignment explanation
Indices: 37193574--37193765 Score: 129
Period size: 44 Copynumber: 4.4 Consensus size: 44
37193564 TATTTCTCTG
* * *
37193574 AGCAGTAGTGGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTA
1 AGCAGTAGTGGAGCAGGTTGAAGACTGTAGATCCTATCTCCCTA
* * * * * * * *
37193618 AGCAGTAGCGGAGCAGGTCGAGGACGGCAAATCTTATCTTCCTA
1 AGCAGTAGTGGAGCAGGTTGAAGACTGTAGATCCTATCTCCCTA
* * * * * *
37193662 AGATAGTAGTGAAGCAGATTTAAGCCACCG--G-TCCTATCTCCCTG
1 AG-CAGTAGTGGAGCAGGTTGAAG--ACTGTAGATCCTATCTCCCTA
* * * * * *
37193706 AGCAGCAGTGGAGTAGGTTGAATAATGTAGATACTGTCTCCCTA
1 AGCAGTAGTGGAGCAGGTTGAAGACTGTAGATCCTATCTCCCTA
37193750 AGCAGTAGTGGAGCAG
1 AGCAGTAGTGGAGCAG
37193766 ATCATGGATC
Statistics
Matches: 105, Mismatches: 37, Indels: 12
0.68 0.24 0.08
Matches are distributed among these distances:
41 2 0.02
43 15 0.14
44 71 0.68
45 14 0.13
47 3 0.03
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (44 bp):
AGCAGTAGTGGAGCAGGTTGAAGACTGTAGATCCTATCTCCCTA
Found at i:37193667 original size:254 final size:256
Alignment explanation
Indices: 37193073--37193788 Score: 1044
Period size: 254 Copynumber: 2.8 Consensus size: 256
37193063 GAATAGACCA
*
37193073 TTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGACGAATCTTACC
1 TTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGACGAATCTTATC
* * * * *
37193138 TTCCCAAAATAGTGAAGAAGCAGATTTAAGTCATTAGTCTTATCTCCCTGAGCAGCAGTGGAGTA
66 TTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTGGTCCTATCTCCCTGAGCAGCAGTGGAGTA
* * * * *
37193203 GGTTGAAGATTGCAGAT-CTTGTCTCCCTAAGTAGTAGCGGAGCAGATCAAAGACGGCGAATCTT
131 GGTTGAAGAATGTAGATAC-TGTCTCCCTAAGCAGTAGTGGAGCAGATC----A-TG-G-ATCTT
* *
37193267 ATCTTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCTCTGAGCAGCAGTGGA
188 ATCTTCCCAAGATAGTGGAGAAGCAAATTTAAGCCA-TACTCCTATCTCTCTGAGCAGCAGTGGA
37193332 GTAGG
252 GTAGG
* *
37193337 TTGAAGATTGCAGATCCTGTCTCCCTAAGCAGTAACGGAGCAGATCGAAGACGACGAATCTTATC
1 TTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGACGAATCTTATC
*
37193402 TTCCCAAGATAGTGGAGAAGCAAATTTAAGCCATTGGTCCTATCTCCCTGAGCAGCAGTGGAGTA
66 TTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTGGTCCTATCTCCCTGAGCAGCAGTGGAGTA
*
37193467 GGTTGAAGAATGTAGATACTGTCTCCCTAAGCAGTAGTGGAGCAGATCATGGATCTTATCTTCTC
131 GGTTGAAGAATGTAGATACTGTCTCCCTAAGCAGTAGTGGAGCAGATCATGGATCTTATCTTCCC
* * *
37193532 AAGGTAGTAGGA-AAGCAAATTTAAGCC-T-CTCCTATTTCTCTGAGCAGTAGTGGAGTAGG
196 AAGATAGT-GGAGAAGCAAATTTAAGCCATACTCCTATCTCTCTGAGCAGCAGTGGAGTAGG
* * * *
37193591 TTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGGTCGAGGACGGCAAATCTTATC
1 TTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGACGAATCTTATC
* * * **
37193656 TTCCTAAGATAGTAGTGAAGCAGATTTAAGCCACCGGTCCTATCTCCCTGAGCAGCAGTGGAGTA
66 TTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTGGTCCTATCTCCCTGAGCAGCAGTGGAGTA
*
37193721 GGTTGAATAATGTAGATACTGTCTCCCTAAGCAGTAGTGGAGCAGATCATGGATCTTATCTTCCC
131 GGTTGAAGAATGTAGATACTGTCTCCCTAAGCAGTAGTGGAGCAGATCATGGATCTTATCTTCCC
37193786 AAG
196 AAG
37193789 TGGAGTGGAT
Statistics
Matches: 416, Mismatches: 34, Indels: 14
0.90 0.07 0.03
Matches are distributed among these distances:
254 212 0.51
255 1 0.00
257 33 0.08
258 4 0.01
259 1 0.00
260 1 0.00
264 163 0.39
265 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (256 bp):
TTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGACGAATCTTATC
TTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTGGTCCTATCTCCCTGAGCAGCAGTGGAGTA
GGTTGAAGAATGTAGATACTGTCTCCCTAAGCAGTAGTGGAGCAGATCATGGATCTTATCTTCCC
AAGATAGTGGAGAAGCAAATTTAAGCCATACTCCTATCTCTCTGAGCAGCAGTGGAGTAGG
Found at i:37194428 original size:16 final size:15
Alignment explanation
Indices: 37194407--37194436 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
37194397 TTTTTCCCCG
37194407 ACTTATTTATTTATTC
1 ACTTATTT-TTTATTC
37194423 ACTTATTTTTTATT
1 ACTTATTTTTTATT
37194437 TTTTTTGGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.23, C:0.10, G:0.00, T:0.67
Consensus pattern (15 bp):
ACTTATTTTTTATTC
Found at i:37196419 original size:16 final size:16
Alignment explanation
Indices: 37196398--37196436 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
37196388 TTAACTCATT
*
37196398 TAATTTTTATATAATG
1 TAATTTTTATATAATA
37196414 TAATTTTTATATAATA
1 TAATTTTTATATAATA
37196430 TAATTTT
1 TAATTTT
37196437 ATTTGATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (16 bp):
TAATTTTTATATAATA
Found at i:37197582 original size:53 final size:53
Alignment explanation
Indices: 37197448--37197583 Score: 200
Period size: 53 Copynumber: 2.6 Consensus size: 53
37197438 ACCCGTTCAT
* * *
37197448 ACAGTTGGGGTTCCGCAGTTTTAGCCATACTGTATTGCGAACTTTGTCGAACG
1 ACAGTTGGGGGTCCGCAGTTTTAGCCATGCTGTATCGCGAACTTTGTCGAACG
* * * *
37197501 ACAGTTGGGGGTCTGCAGTTTTAGCCATGTTGTATCGCGAACTTTGTTGGACG
1 ACAGTTGGGGGTCCGCAGTTTTAGCCATGCTGTATCGCGAACTTTGTCGAACG
*
37197554 ACAGTTGGGGGTCCACAGTTTTAGCCATGC
1 ACAGTTGGGGGTCCGCAGTTTTAGCCATGC
37197584 AGTTTTAGCA
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
53 73 1.00
ACGTcount: A:0.19, C:0.20, G:0.29, T:0.32
Consensus pattern (53 bp):
ACAGTTGGGGGTCCGCAGTTTTAGCCATGCTGTATCGCGAACTTTGTCGAACG
Found at i:37198624 original size:28 final size:28
Alignment explanation
Indices: 37198592--37198650 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
37198582 CGCAAGAAGT
*
37198592 AGGATCTGTGTGTATTTTCCATAAAGCC
1 AGGATCTGTGTATATTTTCCATAAAGCC
37198620 AGGATCTGTGTATATTTTCCATAAAGCC
1 AGGATCTGTGTATATTTTCCATAAAGCC
37198648 AGG
1 AGG
37198651 TTCCATCTAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (28 bp):
AGGATCTGTGTATATTTTCCATAAAGCC
Found at i:37205209 original size:42 final size:42
Alignment explanation
Indices: 37205150--37205237 Score: 176
Period size: 42 Copynumber: 2.1 Consensus size: 42
37205140 CGTTGCAAAC
37205150 AGAAATGTTGATAATTTTGTTCATCAAAACATTTTTAATTCG
1 AGAAATGTTGATAATTTTGTTCATCAAAACATTTTTAATTCG
37205192 AGAAATGTTGATAATTTTGTTCATCAAAACATTTTTAATTCG
1 AGAAATGTTGATAATTTTGTTCATCAAAACATTTTTAATTCG
37205234 AGAA
1 AGAA
37205238 GCATAATCAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.38, C:0.09, G:0.12, T:0.41
Consensus pattern (42 bp):
AGAAATGTTGATAATTTTGTTCATCAAAACATTTTTAATTCG
Found at i:37211731 original size:22 final size:21
Alignment explanation
Indices: 37211706--37211771 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
37211696 TTTAAAATTT
*
37211706 TAAATTTTATTTAATATTTTTA
1 TAAATTTTA-ATAATATTTTTA
*
37211728 TAAATTTTAATAATGTTTTTA
1 TAAATTTTAATAATATTTTTA
*
37211749 TATA-TTT-ATAAT-TTTTTA
1 TAAATTTTAATAATATTTTTA
*
37211767 AAAAT
1 TAAAT
37211772 ATTTTTGATT
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
18 8 0.21
19 5 0.13
20 3 0.08
21 13 0.34
22 9 0.24
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (21 bp):
TAAATTTTAATAATATTTTTA
Found at i:37211751 original size:29 final size:28
Alignment explanation
Indices: 37211694--37211790 Score: 74
Period size: 29 Copynumber: 3.4 Consensus size: 28
37211684 AACTTTTAAT
*
37211694 TTTTTA-AAATTTT-AAATTTTATTTAATA
1 TTTTTATAAATTTTAAAATATT-TTT-ATA
*
37211722 TTTTTATAAATTTTAATAATGTTTTTATA
1 TTTTTATAAATTTTAA-AATATTTTTATA
* * *
37211751 TATTTATAATTTTTTAAAAATATTTTT-GA
1 TTTTTATAA-ATTTT-AAAATATTTTTATA
*
37211780 TTTTTAAAAAT
1 TTTTTATAAAT
37211791 AAGCTTTGAA
Statistics
Matches: 56, Mismatches: 8, Indels: 10
0.76 0.11 0.14
Matches are distributed among these distances:
28 7 0.12
29 26 0.46
30 16 0.29
31 7 0.12
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (28 bp):
TTTTTATAAATTTTAAAATATTTTTATA
Found at i:37211773 original size:20 final size:19
Alignment explanation
Indices: 37211750--37211791 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
37211740 ATGTTTTTAT
37211750 ATATTTATAATTTTTTAAAA
1 ATATTTATAA-TTTTTAAAA
* *
37211770 ATATTTTTGATTTTTAAAA
1 ATATTTATAATTTTTAAAA
37211789 ATA
1 ATA
37211792 AGCTTTGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (19 bp):
ATATTTATAATTTTTAAAA
Found at i:37211798 original size:20 final size:19
Alignment explanation
Indices: 37211761--37211799 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
37211751 TATTTATAAT
**
37211761 TTTTTAAAAATATTTTTGA
1 TTTTTAAAAATAGCTTTGA
37211780 TTTTTAAAAATAAGCTTTGA
1 TTTTTAAAAAT-AGCTTTGA
37211800 AATGATTGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.38, C:0.03, G:0.08, T:0.51
Consensus pattern (19 bp):
TTTTTAAAAATAGCTTTGA
Found at i:37214881 original size:57 final size:57
Alignment explanation
Indices: 37214781--37214890 Score: 159
Period size: 57 Copynumber: 1.9 Consensus size: 57
37214771 AGGTTTATGC
* *
37214781 GAGCTCTCCTCACGAGCTATCTTTGCGAGCACCCGGCACCCTAGCGGGGTCCCTCGT
1 GAGCTCTCCTCACGAGCTATCTTTGCGAACACCCAGCACCCTAGCGGGGTCCCTCGT
* * *
37214838 GAGCTCTCC-CAGCGAGCTATCTTTGTGAACATCCAGCATCCTAGCGGGGTCCC
1 GAGCTCTCCTCA-CGAGCTATCTTTGCGAACACCCAGCACCCTAGCGGGGTCCC
37214891 CAACGAACTA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
56 2 0.04
57 45 0.96
ACGTcount: A:0.16, C:0.36, G:0.25, T:0.22
Consensus pattern (57 bp):
GAGCTCTCCTCACGAGCTATCTTTGCGAACACCCAGCACCCTAGCGGGGTCCCTCGT
Found at i:37217827 original size:48 final size:48
Alignment explanation
Indices: 37217772--37217868 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
37217762 TTTCATACTT
37217772 AAGAGGTTTTAAAATTCTTTGCTTGCAAACCTTATTTCTATAGCTGGG
1 AAGAGGTTTTAAAATTCTTTGCTTGCAAACCTTATTTCTATAGCTGGG
37217820 AAGAGGTTTTAAAATTCTTTGCTTGCAAACCTTATTTCTATAGCTGGG
1 AAGAGGTTTTAAAATTCTTTGCTTGCAAACCTTATTTCTATAGCTGGG
37217868 A
1 A
37217869 GTTTTACTCT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (48 bp):
AAGAGGTTTTAAAATTCTTTGCTTGCAAACCTTATTTCTATAGCTGGG
Found at i:37218026 original size:69 final size:69
Alignment explanation
Indices: 37217847--37218820 Score: 851
Period size: 69 Copynumber: 14.2 Consensus size: 69
37217837 TTTGCTTGCA
* * * * * * * * * *
37217847 AACCTTATTTCTATAGCTGGGAGTTTTACTCTCGTTAACTATTTTAGATGTTGCGGCTATTCACT
1 AACCTTGTTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGTTGCGGCTCTTCACC
**
37217912 TACG
66 TGTG
* * * ** * *
37217916 AACCTTG-TTTTATAGTTGGGAGCTTTCCTCTCGCTAACTGTTTTAGAGGTTGCAACTATTCACT
1 AACCTTGTTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGTTGCGGCTCTTCACC
37217980 TGTG
66 TGTG
* * * * * *
37217984 AACTTTGTTTTTACAGCTGGGAGCTTTGCTCTCGTTAACTGTTTTAAAGGTTACGGCTTTTCACT
1 AACCTTGTTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGTTGCGGCTCTTCACC
*
37218049 TGCG
66 TGTG
* ** * * ** *
37218053 AACCTTGTTTTTACAACTGGGAGCTTTATTCTGGCTAACTGTTTTAGAGGTTGCGACTCTTTGCT
1 AACCTTGTTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGTTGCGGCTCTTCACC
37218118 TGTG
66 TGTG
* * * * * * * *
37218122 AATCTTG-TTTTATAGTTAGGAGATTTGCTCTCGCTAACTGTTTTAGAGGTTGTGGCTCTTCGCT
1 AACCTTGTTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGTTGCGGCTCTTCACC
37218186 TGTG
66 TGTG
** * * * * * *
37218190 AATATT-TTTTTAAAACTGGGAGCTTTGCTCTCGCTAACTGTTTTAAAGGTTACTGCTCTTTACC
1 AACCTTGTTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGTTGCGGCTCTTCACC
37218254 TGTG
66 TGTG
* * * * * *
37218258 AACCTTTTTTTTATAGCTAGGAGCTTTGCTTTTGCTAACTGTTTTAGA-GTCTGTGGCTCTTCAC
1 AACCTTGTTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGT-TGCGGCTCTTCAC
*
37218322 CTGTA
65 CTGTG
** * * * * *
37218327 AACCTTAATTTTACAGCTGGGATCTTTGCTCTCGCTAATTGTTTTAGAGGTTACGGCTCTTTACT
1 AACCTTGTTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGTTGCGGCTCTTCACC
**
37218392 TACG
66 TGTG
* * * * * * *
37218396 AACCTTGTTTTTACAGTTGGGAGCTTTTCTCTCACTAACTATTTTAGAGGCTGCAGC-CATTCGC
1 AACCTTGTTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGTTGCGGCTC-TTCAC
*
37218460 CTGCG
65 CTGTG
* * * * * * * *
37218465 GACCTTGTTTTTACAACTGAGAGATTTTCTCTCGCTAACTGTTTTAAAGGCTGCGGCTGTTCACC
1 AACCTTGTTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGTTGCGGCTCTTCACC
*
37218530 TATG
66 TGTG
* * * * * * *
37218534 AATCTTGTTTTTACAACTGGGAGCTTTTCTCTTGCTAACTATTTTAGAGGTTGTGGCTCTTCGCC
1 AACCTTGTTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGTTGCGGCTCTTCACC
*
37218599 AGTG
66 TGTG
* * * * ** * * *
37218603 AACCTTATTTTTACAGTTAGAAGCTTTATTCTTGCTAACTGTTTTAGAGGCTGCGACTCTTCACC
1 AACCTTGTTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGTTGCGGCTCTTCACC
**
37218668 TACG
66 TGTG
** * * * **
37218672 AACCTTGTTTTTACAGCTCAGAGCTTTGCTGTCGCTATCTATTTTAGAGGTTGCCACTCTTCACC
1 AACCTTGTTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGTTGCGGCTCTTCACC
37218737 TGTG
66 TGTG
* * * *
37218741 AACCTTGTTTTTACAACTAGGAACTTTGCTCTCGTTAACTGTTTTAGAGGTTGCGGCTCTTCACC
1 AACCTTGTTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGTTGCGGCTCTTCACC
***
37218806 TACA
66 TGTG
37218810 AACCTTGTTTT
1 AACCTTGTTTT
37218821 CACCGACGAT
Statistics
Matches: 724, Mismatches: 174, Indels: 14
0.79 0.19 0.02
Matches are distributed among these distances:
68 167 0.23
69 555 0.77
70 2 0.00
ACGTcount: A:0.19, C:0.20, G:0.20, T:0.41
Consensus pattern (69 bp):
AACCTTGTTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTTTTAGAGGTTGCGGCTCTTCACC
TGTG
Found at i:37232244 original size:26 final size:27
Alignment explanation
Indices: 37232215--37232267 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
37232205 AACCAATGAT
37232215 TCGGG-GAATCAGCACTTAGCAACCCC
1 TCGGGAGAATCAGCACTTAGCAACCCC
37232241 TCGGGAGAATCAGCACTTAGCAACCCC
1 TCGGGAGAATCAGCACTTAGCAACCCC
37232268 CTTCACATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 5 0.19
27 21 0.81
ACGTcount: A:0.28, C:0.34, G:0.23, T:0.15
Consensus pattern (27 bp):
TCGGGAGAATCAGCACTTAGCAACCCC
Found at i:37232273 original size:102 final size:101
Alignment explanation
Indices: 37232140--37232343 Score: 300
Period size: 102 Copynumber: 2.0 Consensus size: 101
37232130 CACCAATGAG
* * * * * *
37232140 TCGGGGAATCAACACTTAGCGACCCCTTTCACATTTAAGATACGGCGGGATCAACACTTAGCAAT
1 TCGGGGAATCAACACTTAGCAACCCCCTTCACATTTAAGATACAGCGGAATCAACACTGAGCAAC
*
37232205 AACCAATGATTCGGGGAATCAGCACTTAGCAACCCC
66 AACCAATGAGTCGGGGAATCAGCACTTAGCAACCCC
* * *
37232241 TCGGGAGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACAGTGGAATCAGCACTGAGCAA
1 TCGGG-GAATCAACACTTAGCAACCCCCTTCACATTTAAGATACAGCGGAATCAACACTGAGCAA
*
37232306 CCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCC
65 CAACCAATGAGTCGGGGAATCAGCACTTAGCAACCCC
37232343 T
1 T
37232344 TTCACATTTA
Statistics
Matches: 91, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
101 5 0.05
102 86 0.95
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.20
Consensus pattern (101 bp):
TCGGGGAATCAACACTTAGCAACCCCCTTCACATTTAAGATACAGCGGAATCAACACTGAGCAAC
AACCAATGAGTCGGGGAATCAGCACTTAGCAACCCC
Found at i:37232306 original size:42 final size:40
Alignment explanation
Indices: 37232247--37232382 Score: 142
Period size: 42 Copynumber: 3.5 Consensus size: 40
37232237 CCCCTCGGGA
37232247 GAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACAGTG
1 GAATCAGCACTTAGCAACCCCCTTCACATTTAAG-TAC-GTG
* * * *
37232289 GAATCAGCACTGAGCAA-CCAC--CA-A--TGAGT-CGGG
1 GAATCAGCACTTAGCAACCCCCTTCACATTTAAGTACGTG
*
37232322 GAATCAGCACTTAGCAACCCCTTTCACATTTAAGGTACGGTG
1 GAATCAGCACTTAGCAACCCCCTTCACATTTAA-GTAC-GTG
37232364 GAATCAGCACTTAGCAACC
1 GAATCAGCACTTAGCAACC
37232383 ACCAATGAAT
Statistics
Matches: 76, Mismatches: 9, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
33 18 0.24
34 3 0.04
35 1 0.01
36 5 0.07
37 1 0.01
38 1 0.01
39 4 0.05
40 2 0.03
41 4 0.05
42 37 0.49
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.21
Consensus pattern (40 bp):
GAATCAGCACTTAGCAACCCCCTTCACATTTAAGTACGTG
Found at i:37232330 original size:33 final size:33
Alignment explanation
Indices: 37232288--37232415 Score: 139
Period size: 33 Copynumber: 3.6 Consensus size: 33
37232278 AAGATACAGT
*
37232288 GGAATCAGCACTGAGCAACCACCAATGAGTCGG
1 GGAATCAGCACTTAGCAACCACCAATGAGTCGG
* *
37232321 GGAATCAGCACTTAGCAACCCCTTTCACATTTAAGGTACGG
1 GGAATCAGCACTTAGCAACCAC---CA-A--TGA-GT-CGG
*
37232362 TGGAATCAGCACTTAGCAACCACCAATGAATCGG
1 -GGAATCAGCACTTAGCAACCACCAATGAGTCGG
37232396 GGAATCAGCACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
37232416 CCTTGGGAGA
Statistics
Matches: 80, Mismatches: 6, Indels: 18
0.77 0.06 0.17
Matches are distributed among these distances:
33 40 0.50
34 3 0.04
35 1 0.01
36 4 0.05
37 1 0.01
38 1 0.01
39 4 0.05
40 2 0.03
41 3 0.04
42 21 0.26
ACGTcount: A:0.33, C:0.27, G:0.22, T:0.18
Consensus pattern (33 bp):
GGAATCAGCACTTAGCAACCACCAATGAGTCGG
Found at i:37232411 original size:177 final size:177
Alignment explanation
Indices: 37232109--37232447 Score: 570
Period size: 177 Copynumber: 1.9 Consensus size: 177
37232099 TCCGTTATTG
* * *
37232109 GTGGATTCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAACACTTAGCGACCCCTTTCACAT
1 GTGGAATCAGCACTGAGCAACCACCAATGAGTCGGGGAATCAACACTTAGCAACCCCTTTCACAT
* * *
37232174 TTAAGATACGGCGGGATCAACACTTAGCAATAACCAATGATTCGGGGAATCAGCACTTAGCAACC
66 TTAAGATACGGCGGAATCAACACTTAGCAACAACCAATGAATCGGGGAATCAGCACTTAGCAACC
37232239 CCTCGGGAGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACA
131 CCTCGGGAGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACA
*
37232286 GTGGAATCAGCACTGAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTTTCACAT
1 GTGGAATCAGCACTGAGCAACCACCAATGAGTCGGGGAATCAACACTTAGCAACCCCTTTCACAT
* * * *
37232351 TTAAGGTACGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACTTAGCAACC
66 TTAAGATACGGCGGAATCAACACTTAGCAACAACCAATGAATCGGGGAATCAGCACTTAGCAACC
*
37232416 CCTTGGGAGAATCAGCACTTAGCAACCCCCTT
131 CCTCGGGAGAATCAGCACTTAGCAACCCCCTT
37232448 TATATTCAAT
Statistics
Matches: 150, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
177 150 1.00
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.20
Consensus pattern (177 bp):
GTGGAATCAGCACTGAGCAACCACCAATGAGTCGGGGAATCAACACTTAGCAACCCCTTTCACAT
TTAAGATACGGCGGAATCAACACTTAGCAACAACCAATGAATCGGGGAATCAGCACTTAGCAACC
CCTCGGGAGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACA
Found at i:37232418 original size:75 final size:75
Alignment explanation
Indices: 37232241--37232419 Score: 304
Period size: 75 Copynumber: 2.4 Consensus size: 75
37232231 TAGCAACCCC
*
37232241 TCGGGAGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACAGTGGAATCAGCACTGAGCAA
1 TCGGG-GAATCAGCACTTAGCAACCCCTTTCACATTTAAGATACAGTGGAATCAGCACTGAGCAA
*
37232306 CCACCAATGAG
65 CCACCAATGAA
* * *
37232317 TCGGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGGTACGGTGGAATCAGCACTTAGCAAC
1 TCGGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGATACAGTGGAATCAGCACTGAGCAAC
37232382 CACCAATGAA
66 CACCAATGAA
37232392 TCGGGGAATCAGCACTTAGCAACCCCTT
1 TCGGGGAATCAGCACTTAGCAACCCCTT
37232420 GGGAGAATCA
Statistics
Matches: 98, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
75 93 0.95
76 5 0.05
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.20
Consensus pattern (75 bp):
TCGGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGATACAGTGGAATCAGCACTGAGCAAC
CACCAATGAA
Found at i:37239599 original size:102 final size:102
Alignment explanation
Indices: 37239481--37239682 Score: 368
Period size: 102 Copynumber: 2.0 Consensus size: 102
37239471 CCAATGAGTC
* *
37239481 GGGGAATCAGCACTTAGCAACCCCTTTCACATTGAAGATACGGTGGGATCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTGAAGATACGGTGGAATCAGCACTTAGCAACCA
*
37239546 CCAATGATTCGGGGAATCAGCACTTAGCAACCCCTCG
66 CCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTCG
*
37239583 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTGAAGATACGGTGGAATCAGCACTTAGCAACCA
37239648 CCAATGAGTCGGGGAATCAGCACTTAGCAACCCCT
66 CCAATGAGTCGGGGAATCAGCACTTAGCAACCCCT
37239683 TTCACATTTT
Statistics
Matches: 96, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
102 96 1.00
ACGTcount: A:0.30, C:0.29, G:0.22, T:0.19
Consensus pattern (102 bp):
GGGGAATCAGCACTTAGCAACCCCCTTCACATTGAAGATACGGTGGAATCAGCACTTAGCAACCA
CCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTCG
Found at i:37239644 original size:42 final size:42
Alignment explanation
Indices: 37239585--37239721 Score: 175
Period size: 42 Copynumber: 3.5 Consensus size: 42
37239575 ACCCCTCGGG
37239585 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGT
1 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGT
* *
37239627 GGAATCAGCACTTAGCAA-CCAC--CA-A--TGAG-T-CGG-
1 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGT
* *
37239660 GGAATCAGCACTTAGCAACCCCTTTCACATTTTAGATACGGT
1 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGT
37239702 GGAATCAGCACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
37239722 ACCAATGAAT
Statistics
Matches: 81, Mismatches: 5, Indels: 18
0.78 0.05 0.17
Matches are distributed among these distances:
33 18 0.22
34 5 0.06
35 1 0.01
36 5 0.06
37 1 0.01
38 1 0.01
39 5 0.06
40 1 0.01
41 6 0.07
42 38 0.47
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (42 bp):
GGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGT
Found at i:37239749 original size:177 final size:177
Alignment explanation
Indices: 37239446--37239786 Score: 610
Period size: 177 Copynumber: 1.9 Consensus size: 177
37239436 TATCCATTAT
*
37239446 CGGTGGATTCAACACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTTTCAC
1 CGGTGGAATCAACACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTTTCAC
* * *
37239511 ATTGAAGATACGGTGGGATCAGCACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAA
66 ATTGAAGATACGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAACACTTAGCAA
37239576 CCCCTCGGGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATA
131 CCCCTCGGGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATA
*
37239623 CGGTGGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTTTCAC
1 CGGTGGAATCAACACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTTTCAC
**
37239688 ATTTTAGATACGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAACACTTAGCAA
66 ATTGAAGATACGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAACACTTAGCAA
*
37239753 CCCCTTGGGGGAATCAGCACTTAGCAACCCCCTT
131 CCCCTCGGGGGAATCAGCACTTAGCAACCCCCTT
37239787 TATATTCAAT
Statistics
Matches: 156, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
177 156 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.20
Consensus pattern (177 bp):
CGGTGGAATCAACACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTTTCAC
ATTGAAGATACGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAACACTTAGCAA
CCCCTCGGGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATA
Found at i:37239757 original size:75 final size:75
Alignment explanation
Indices: 37239583--37239758 Score: 316
Period size: 75 Copynumber: 2.3 Consensus size: 75
37239573 CAACCCCTCG
*
37239583 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
*
37239648 CCAATGAGTC
66 CCAATGAATC
*
37239658 GGGGAATCAGCACTTAGCAACCCCTTTCACATTTTAGATACGGTGGAATCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
37239723 CCAATGAATC
66 CCAATGAATC
*
37239733 GGGGAATCAACACTTAGCAACCCCTT
1 GGGGAATCAGCACTTAGCAACCCCTT
37239759 GGGGGAATCA
Statistics
Matches: 97, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 97 1.00
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.21
Consensus pattern (75 bp):
GGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
CCAATGAATC
Found at i:37269459 original size:29 final size:29
Alignment explanation
Indices: 37269426--37269483 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 29
37269416 TTTCTAGCTT
37269426 ATTTTATACTTAG-GTTATTTTCATTTGTA
1 ATTTTATACTT-GCGTTATTTTCATTTGTA
* *
37269455 ATTTTATTCTTGCTTTTATTTTCATTTGT
1 ATTTTATACTTGC-GTTATTTTCATTTGT
37269484 CATGGAACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 1 0.04
29 10 0.40
30 14 0.56
ACGTcount: A:0.19, C:0.09, G:0.09, T:0.64
Consensus pattern (29 bp):
ATTTTATACTTGCGTTATTTTCATTTGTA
Found at i:37270130 original size:21 final size:21
Alignment explanation
Indices: 37270106--37270157 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 21
37270096 TTTTTCTTTC
*
37270106 TTTC-TCCTTTCTCCTTCTCTA
1 TTTCTTCCTTTCTCATT-TCTA
*
37270127 TTTCTTTCTTTCTCATTTCTA
1 TTTCTTCCTTTCTCATTTCTA
*
37270148 -TTCTTTCTTT
1 TTTCTTCCTTT
37270158 TATTTTATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 10 0.36
21 8 0.29
22 10 0.36
ACGTcount: A:0.06, C:0.29, G:0.00, T:0.65
Consensus pattern (21 bp):
TTTCTTCCTTTCTCATTTCTA
Found at i:37270151 original size:16 final size:16
Alignment explanation
Indices: 37270098--37270155 Score: 61
Period size: 16 Copynumber: 3.8 Consensus size: 16
37270088 TCCTTTTTTT
*
37270098 TTTCTTTCTTTCTC-C
1 TTTCTTTCTTTCTCTA
*
37270113 TTTC--TCCTTCTCTA
1 TTTCTTTCTTTCTCTA
37270127 TTTCTTTCTTTCTC-A
1 TTTCTTTCTTTCTCTA
37270142 TTTCTATTCTTTCT
1 TTTCT-TTCTTTCT
37270156 TTTATTTTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
13 7 0.19
14 4 0.11
15 10 0.28
16 15 0.42
ACGTcount: A:0.05, C:0.29, G:0.00, T:0.66
Consensus pattern (16 bp):
TTTCTTTCTTTCTCTA
Found at i:37270153 original size:20 final size:22
Alignment explanation
Indices: 37270112--37270157 Score: 69
Period size: 20 Copynumber: 2.2 Consensus size: 22
37270102 TTTCTTTCTC
*
37270112 CTTTCTCCTTCTCTATTTCTTT
1 CTTTCTCATTCTCTATTTCTTT
37270134 CTTTCTCATT-TCTA-TTCTTT
1 CTTTCTCATTCTCTATTTCTTT
37270154 CTTT
1 CTTT
37270158 TATTTTATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 10 0.43
21 4 0.17
22 9 0.39
ACGTcount: A:0.07, C:0.28, G:0.00, T:0.65
Consensus pattern (22 bp):
CTTTCTCATTCTCTATTTCTTT
Found at i:37270181 original size:8 final size:8
Alignment explanation
Indices: 37270170--37270201 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
37270160 TTTTATAAAT
37270170 ATATAATA
1 ATATAATA
37270178 ATATAATA
1 ATATAATA
*
37270186 TTATAATA
1 ATATAATA
37270194 ATATAATA
1 ATATAATA
37270202 TAACAATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (8 bp):
ATATAATA
Found at i:37270190 original size:16 final size:16
Alignment explanation
Indices: 37270167--37270202 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
37270157 TTATTTTATA
37270167 AATA-TATAATAATAT
1 AATATTATAATAATAT
37270182 AATATTATAATAATAT
1 AATATTATAATAATAT
37270198 AATAT
1 AATAT
37270203 AACAATATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 4 0.20
16 16 0.80
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
AATATTATAATAATAT
Found at i:37270209 original size:16 final size:16
Alignment explanation
Indices: 37270174--37270209 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
37270164 ATAAATATAT
* *
37270174 AATAATATAATATTAT
1 AATAATATAATATAAC
37270190 AATAATATAATATAAC
1 AATAATATAATATAAC
37270206 AATA
1 AATA
37270210 TACTTATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (16 bp):
AATAATATAATATAAC
Found at i:37273804 original size:29 final size:30
Alignment explanation
Indices: 37273763--37273837 Score: 91
Period size: 30 Copynumber: 2.5 Consensus size: 30
37273753 ATATGCTTCC
*
37273763 TATTTTTACAATTTAAT-ATTTTATTTTT-
1 TATTTTTAAAATTTAATCATTTTATTTTTA
*
37273791 TATTTTTAAGAATTTAATCTTTTTATTTTTA
1 TATTTTTAA-AATTTAATCATTTTATTTTTA
* *
37273822 AAATTTTAAAATTTAA
1 TATTTTTAAAATTTAA
37273838 ATCTAATTCT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
28 8 0.20
29 8 0.20
30 17 0.43
31 7 0.17
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (30 bp):
TATTTTTAAAATTTAATCATTTTATTTTTA
Found at i:37273829 original size:23 final size:22
Alignment explanation
Indices: 37273774--37273830 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 22
37273764 ATTTTTACAA
*
37273774 TTTAATATTTT-ATTTTTTATT
1 TTTAAAATTTTAATTTTTTATT
37273795 TTTAAGAA-TTTAATCTTTTTATT
1 TTTAA-AATTTTAAT-TTTTTATT
37273818 TTTAAAATTTTAA
1 TTTAAAATTTTAA
37273831 AATTTAAATC
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
21 8 0.26
22 5 0.16
23 18 0.58
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (22 bp):
TTTAAAATTTTAATTTTTTATT
Found at i:37275763 original size:107 final size:109
Alignment explanation
Indices: 37275638--37275851 Score: 369
Period size: 107 Copynumber: 2.0 Consensus size: 109
37275628 TATTTGGTAT
* *
37275638 TTGACAATTTTGTATAATATACAAGTATTATAATAAACATAAATTCTTAACTA-CAACTTTATTA
1 TTGACAATTTTGTATAATATACAAGTATTATAATAAACATAAACTCTTAACTACCAACTTTATCA
37275702 AAGATGGGTAGAATTTTCTT-TCTTTTCATTAATTTTGTTTAGG
66 AAGATGGGTAGAATTTTCTTCTCTTTTCATTAATTTTGTTTAGG
* * *
37275745 TTGACAATTTTGTATAATATACAAGTATTATGATAAATATCAACTCTTAACTACCAACTTTATCA
1 TTGACAATTTTGTATAATATACAAGTATTATAATAAACATAAACTCTTAACTACCAACTTTATCA
37275810 AAGATGGGTAGAATTTTCTTCTCTTTTCATTAATTTTGTTTA
66 AAGATGGGTAGAATTTTCTTCTCTTTTCATTAATTTTGTTTA
37275852 AGTAGGGATG
Statistics
Matches: 100, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
107 49 0.49
108 30 0.30
109 21 0.21
ACGTcount: A:0.35, C:0.11, G:0.10, T:0.44
Consensus pattern (109 bp):
TTGACAATTTTGTATAATATACAAGTATTATAATAAACATAAACTCTTAACTACCAACTTTATCA
AAGATGGGTAGAATTTTCTTCTCTTTTCATTAATTTTGTTTAGG
Found at i:37277855 original size:29 final size:29
Alignment explanation
Indices: 37277811--37277868 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
37277801 TTAAAATTTT
*
37277811 AAAAATAAAAAGATTAAATTCTTAAAAATA
1 AAAAATAAAAAGATTAAATT-GTAAAAATA
*
37277841 AAAAAT-AAAATATTAAATTGTAAAAATA
1 AAAAATAAAAAGATTAAATTGTAAAAATA
37277869 GGAAGCATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 8 0.31
29 12 0.46
30 6 0.23
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.28
Consensus pattern (29 bp):
AAAAATAAAAAGATTAAATTGTAAAAATA
Found at i:37280668 original size:19 final size:19
Alignment explanation
Indices: 37280639--37280736 Score: 153
Period size: 19 Copynumber: 5.1 Consensus size: 19
37280629 CCGGACTCAC
37280639 ATATGGATATGCAATCTTAG
1 ATAT-GATATGCAATCTTAG
37280659 ATATGATATGCAATCTTAG
1 ATATGATATGCAATCTTAG
37280678 ATATGATATGCAATCTTAG
1 ATATGATATGCAATCTTAG
37280697 ATATGATATATGCAATCTTAG
1 ATATG--ATATGCAATCTTAG
*
37280718 ATATGA-ATGTAATCTTAG
1 ATATGATATGCAATCTTAG
37280736 A
1 A
37280737 AGATGTGATT
Statistics
Matches: 75, Mismatches: 1, Indels: 6
0.91 0.01 0.07
Matches are distributed among these distances:
18 12 0.16
19 40 0.53
20 4 0.05
21 19 0.25
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.37
Consensus pattern (19 bp):
ATATGATATGCAATCTTAG
Found at i:37280740 original size:21 final size:22
Alignment explanation
Indices: 37280639--37280759 Score: 86
Period size: 19 Copynumber: 5.9 Consensus size: 22
37280629 CCGGACTCAC
37280639 ATATGGATATGCAATCTT---AG
1 ATAT-GATATGCAATCTTAGAAG
37280659 ATATGATATGCAATCTT---AG
1 ATATGATATGCAATCTTAGAAG
*
37280678 ATATGATATGCAATCTTAG-AT
1 ATATGATATGCAATCTTAGAAG
37280699 ATGAT-ATATGCAATCTT---AG
1 AT-ATGATATGCAATCTTAGAAG
*
37280718 ATATGA-ATGTAATCTTAGAAG
1 ATATGATATGCAATCTTAGAAG
* * *
37280739 ATGTGATTTTGTAATCTTAGA
1 ATATGA-TATGCAATCTTAGA
37280760 GATTTAATTT
Statistics
Matches: 87, Mismatches: 5, Indels: 15
0.81 0.05 0.14
Matches are distributed among these distances:
18 11 0.13
19 36 0.41
20 4 0.05
21 22 0.25
22 2 0.02
23 12 0.14
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.38
Consensus pattern (22 bp):
ATATGATATGCAATCTTAGAAG
Found at i:37281281 original size:33 final size:33
Alignment explanation
Indices: 37281225--37281287 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
37281215 TTACAGTTCA
37281225 AATTAGTTTTTTTATTTTCTTTATT-TTTAATT
1 AATTAGTTTTTTTATTTTCTTTATTATTTAATT
*
37281257 AATTAGTTTTTATTATTTTTTTTATTATTTA
1 AATTAGTTTTT-TTATTTTCTTTATTATTTA
37281288 TTTTTCATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
32 11 0.39
33 13 0.46
34 4 0.14
ACGTcount: A:0.24, C:0.02, G:0.03, T:0.71
Consensus pattern (33 bp):
AATTAGTTTTTTTATTTTCTTTATTATTTAATT
Found at i:37281312 original size:42 final size:42
Alignment explanation
Indices: 37281226--37281312 Score: 99
Period size: 40 Copynumber: 2.1 Consensus size: 42
37281216 TACAGTTCAA
* * *
37281226 ATTAGTTTTTTTATTTTCTTTATTTTTAATTAATTAGTTTTT
1 ATTAGTTTTTTTATATTATTTATTTTTAATTAATTAGTTATT
37281268 ATTA-TTTTTTT-TATTATTTATTTTTCATATTTAATTA-TTATT
1 ATTAGTTTTTTTATATTATTTATTTTT-A-A-TTAATTAGTTATT
37281310 ATT
1 ATT
37281313 TTTAAAATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
40 12 0.31
41 8 0.21
42 12 0.31
43 7 0.18
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (42 bp):
ATTAGTTTTTTTATATTATTTATTTTTAATTAATTAGTTATT
Found at i:37287413 original size:132 final size:132
Alignment explanation
Indices: 37287155--37288047 Score: 1188
Period size: 132 Copynumber: 6.8 Consensus size: 132
37287145 GCAGATCAAT
* * * * * * *
37287155 GAAGATAGCAGGTCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCAGATCTTGTCT
1 GAAGAT-GCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCT
*** * * * * * * * *
37287218 TCCCATATTGGTGGTGGAGTAGATCGAAGAAAG-ATGATCTTGTCTTCATTTATTGG-CGTGAAG
65 TCATGTATTGG-CGTGAAGTAGATCGAAGATAGCA-GGTCCTGTCTTCCTATATTGGTAG-GAAG
**
37287281 TAAATC
127 TGGATC
* * * * * *
37287287 GAAGATAGCATG-TCATGTCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCAGATCTTGTC
1 GAAGAT-GCA-GATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTC
* * *
37287349 TTTATGTATTGGTGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGT
64 TTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTATATTGGTAG-GAAGT
37287414 GGATC
128 GGATC
*
37287419 GAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAACAAAGCAGATCTTGTCTT
1 GAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
*
37287484 CATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGA
66 CATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGA
37287549 TC
131 TC
*
37287551 GAAGATGCAGATCTTATCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
1 GAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
* * * *
37287616 CATGTATTGGCGTGAAGTAGATCGAAAATAGTAGGTCTTGTCTTCCTATATTGGTAGAAAGTGGA
66 CATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGA
37287681 TC
131 TC
* * **
37287683 GAAGATGCAGATCTTATCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAAATCTTAACTT
1 GAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
* * * * *
37287748 CATGTATTGTCGTGAAGTAGATCAAAGATAGCAGGTCCTGTCTTTCTATATTGGCAGGAAATGGA
66 CATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGA
37287813 TC
131 TC
* * *
37287815 GAAGATGCAAATATTATCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
1 GAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
* *
37287880 CATGTATTGGCGTGAAGTAGATCGAAAATAGCAGGTCCTGTCTTCCTATATTGTTAGGAAGTGGA
66 CATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGA
37287945 TC
131 TC
* *
37287947 GAAGATGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCAAAGAAAGCAGATCTTGTCTT
1 GAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
* *
37288012 CATTTATTGGCGTGAAGTAGATCGAAAATAGCAGGT
66 CATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGT
37288048 TTTGCCTTCC
Statistics
Matches: 692, Mismatches: 63, Indels: 12
0.90 0.08 0.02
Matches are distributed among these distances:
130 1 0.00
131 57 0.08
132 565 0.82
133 69 0.10
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (132 bp):
GAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
CATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGA
TC
Found at i:37287536 original size:220 final size:220
Alignment explanation
Indices: 37287155--37288045 Score: 820
Period size: 220 Copynumber: 4.0 Consensus size: 220
37287145 GCAGATCAAT
* *
37287155 GAAGATAGCAGGTCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGATGCAGATCTTGTCTT
1 GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATGCAGATCTTGTCTT
* *
37287219 CCCATATTGGTGGTGGAGTAGATCGAAGAAAG-ATGATCTTGTCTTCATTTATTGGCGTGAAGTA
66 CCCATATTGGTGGTGAAGTAGATCGAA-AAAGCA-GATCTTGTCTTCATATATTGGCGTGAAGTA
* * * *
37287283 AATCGAAGATAGCATG-TCATGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGATGCAGATCTT
129 GATCGAAGATAGCA-GATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCAAAGATGCAGATCTT
* *
37287346 GTCTTTATGTATTGGTGTGAAGTAGATC
193 GTCTTCATATATTGGTGTGAAGTAGATC
*
37287374 GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTT
1 GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATGCAGATCTTGTCTT
* * *
37287439 CCCATACTGGTGGCGAAGTAGATCGAACAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAG
66 CCCATATTGGTGGTGAAGTAGATCGAA-AAAGCAGATCTTGTCTTCATATATTGGCGTGAAGTAG
* * * * * *
37287504 ATCAAAGATAGCAGGTCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGATGCAGATCTTAT
130 ATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCAAAGATGCAGATCTTGT
** * *
37287568 CTTCCCATACTGGTGGCGAAGTAGATC
195 CTTCATATATTGGT-GTGAAGTAGATC
* * * * * * * * *
37287595 GAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAAATAGTAGGTCTTGTCT
1 GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT-GCAGATCTTGTCT
* * * * * * * ** * * *
37287659 TCCTATATTGGTAG-AAAGTGGATCGAAGATGCAGATCTTATCTTCCCATACTGGTGGCGAAGTA
65 TCCCATATTGGTGGTGAAGTAGATCGAAAAAGCAGATCTTGTCTTCATATATTGG-CGTGAAGTA
* * ** * * * * *
37287723 GATCGAAGAAAGCAAATCTTAACTTCATGTATT-GTCGTGAAGTAGATCAAAGATAGCAGGTCCT
129 GATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCAAAGAT-GCAGATCTT
* * *
37287787 GTCTTTC-TATATTGGCAG-GAAATGGATC
193 GTC-TTCATATATTGG-TGTGAAGTAGATC
* ** * * * * *
37287815 GAAGAT-GCAAATATTATCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCT
1 GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAG-ATGCAGATCTTGTCT
*** * * * * **
37287879 TCATGTATTGG-CGTGAAGTAGATCGAAAATAGCAGGTCCTGTCTTCCTATATTGTTAG-GAAGT
65 TCCCATATTGGTGGTGAAGTAGATCGAAAA-AGCAGATCTTGTCTTCATATATTG-GCGTGAAGT
* * * * *
37287942 GGATCGAAGAT-GCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCAAAGAAAGCAGATCT
128 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCAAAG-ATGCAGATCT
* *
37288006 TGTCTTCATTTATTGGCGTGAAGTAGATC
192 TGTCTTCATATATTGGTGTGAAGTAGATC
*
37288035 GAAAATAGCAG
1 GAAGATAGCAG
37288046 GTTTTGCCTT
Statistics
Matches: 545, Mismatches: 107, Indels: 38
0.79 0.16 0.06
Matches are distributed among these distances:
219 94 0.17
220 347 0.64
221 101 0.19
222 3 0.01
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (220 bp):
GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATGCAGATCTTGTCTT
CCCATATTGGTGGTGAAGTAGATCGAAAAAGCAGATCTTGTCTTCATATATTGGCGTGAAGTAGA
TCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCAAAGATGCAGATCTTGTC
TTCATATATTGGTGTGAAGTAGATC
Found at i:37288433 original size:44 final size:44
Alignment explanation
Indices: 37288340--37288455 Score: 128
Period size: 44 Copynumber: 2.7 Consensus size: 44
37288330 ATGGCAAATT
* * *
37288340 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATC
1 TTATCTCCCTGAAGTTGCAATGAAGCAGATTAAAACCGATAATC
* * * *
37288384 CTATCTCCCTGAAGTTGCAATGAAGCGGATTAAAACC-TTGGATC
1 TTATCTCCCTGAAGTTGCAATGAAGCAGATTAAAACCGAT-AATC
* *
37288428 TTATCTCTCTGAAGTTGCATTG-AGCAGA
1 TTATCTCCCTGAAGTTGCAATGAAGCAGA
37288456 ACGCATCTAG
Statistics
Matches: 60, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
43 6 0.10
44 54 0.90
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (44 bp):
TTATCTCCCTGAAGTTGCAATGAAGCAGATTAAAACCGATAATC
Found at i:37288568 original size:128 final size:129
Alignment explanation
Indices: 37288340--37288591 Score: 303
Period size: 128 Copynumber: 2.0 Consensus size: 129
37288330 ATGGCAAATT
* ** * *
37288340 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCAAT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATAAAAAACGATAATCCTATCTCCCTAAAGTTGCAAC
* * * *
37288405 GAAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCA-TTGAGCAGAACGCATCTAGTC
66 GAAGCGGATTAAAACCATGGATCTTATCTCTCTGAAATTACAGTAGAGCAGAACGCATCTAGTC
* *
37288468 TTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAATAAAC-A-AATCCTATCTCCCTAAAGTTGTA
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGA-TAAA-AAACGATAATCCTATCTCCCTAAAGTTGCA
* * * * ** *
37288531 GCGGAGTGGATTAGAATGATGGATCTTATCTCTCTGAAATTACAGTAGAGCAGATCGCATC
64 ACGAAGCGGATTAAAACCATGGATCTTATCTCTCTGAAATTACAGTAGAGCAGAACGCATC
37288592 AAATTCATTT
Statistics
Matches: 103, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
128 83 0.81
129 18 0.17
130 2 0.02
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (129 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGATAAAAAACGATAATCCTATCTCCCTAAAGTTGCAAC
GAAGCGGATTAAAACCATGGATCTTATCTCTCTGAAATTACAGTAGAGCAGAACGCATCTAGTC
Found at i:37288899 original size:19 final size:19
Alignment explanation
Indices: 37288875--37288928 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
37288865 AATCTTCGAG
37288875 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
37288894 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
37288913 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
37288929 AGATGTGATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:37289507 original size:23 final size:23
Alignment explanation
Indices: 37289454--37289525 Score: 65
Period size: 23 Copynumber: 3.1 Consensus size: 23
37289444 TAGCTTTTTT
*
37289454 TTTA-TTTTCTTATTTTTAATTA
1 TTTAGTTTTCTTATTTTTTATTA
* *
37289476 ATTAGTTTTTTTATTTTTTATTA
1 TTTAGTTTTCTTATTTTTTATTA
** * *
37289499 TTTCTTTTTCATATTTAATTATTA
1 TTTAGTTTTCTTATTT-TTTATTA
37289523 TTT
1 TTT
37289526 TTTAAAATAT
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
22 3 0.08
23 27 0.69
24 9 0.23
ACGTcount: A:0.22, C:0.04, G:0.01, T:0.72
Consensus pattern (23 bp):
TTTAGTTTTCTTATTTTTTATTA
Found at i:37289519 original size:21 final size:19
Alignment explanation
Indices: 37289473--37289529 Score: 60
Period size: 21 Copynumber: 2.8 Consensus size: 19
37289463 TTATTTTTAA
* *
37289473 TTAATTAGTTTTTTTATTT
1 TTAATTATTTTTTTTATAT
*
37289492 TTTATTATTTCTTTTTCATAT
1 TTAATTATTT-TTTTT-ATAT
37289513 TTAATTATTATTTTTTA
1 TTAATTATT-TTTTTTA
37289530 AAATATATGT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
19 8 0.26
20 6 0.19
21 16 0.52
22 1 0.03
ACGTcount: A:0.23, C:0.04, G:0.02, T:0.72
Consensus pattern (19 bp):
TTAATTATTTTTTTTATAT
Found at i:37289638 original size:6 final size:6
Alignment explanation
Indices: 37289586--37289622 Score: 65
Period size: 6 Copynumber: 6.2 Consensus size: 6
37289576 ATAATATAAT
*
37289586 TATTTT TATTTA TATTTA TATTTA TATTTA TATTTA T
1 TATTTA TATTTA TATTTA TATTTA TATTTA TATTTA T
37289623 CTGTAATTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (6 bp):
TATTTA
Found at i:37289639 original size:22 final size:23
Alignment explanation
Indices: 37289563--37289662 Score: 71
Period size: 22 Copynumber: 4.3 Consensus size: 23
37289553 ATACGCAGGT
* * *
37289563 TTATTTTTGTAGTATA-ATATAA
1 TTATTTTTATATTATATCTATAA
* *
37289585 TTATTTTTAT-TTATATTTATAT
1 TTATTTTTATATTATATCTATAA
* *
37289607 TTATATTTATATT-TATCTGTAA
1 TTATTTTTATATTATATCTATAA
*
37289629 TTATTTTTATAATCTATATGTATATA
1 TTATTTTTAT-AT-TATATCTATA-A
37289655 TTTATTTT
1 -TTATTTT
37289663 AGTATATATA
Statistics
Matches: 60, Mismatches: 11, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
21 4 0.07
22 37 0.62
23 4 0.07
24 1 0.02
25 6 0.10
26 1 0.02
27 7 0.12
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.63
Consensus pattern (23 bp):
TTATTTTTATATTATATCTATAA
Found at i:37289641 original size:12 final size:12
Alignment explanation
Indices: 37289580--37289661 Score: 57
Period size: 12 Copynumber: 7.1 Consensus size: 12
37289570 TGTAGTATAA
37289580 TATAATTAT-TT
1 TATAATTATATT
*
37289591 T-TATTTATATT
1 TATAATTATATT
*
37289602 TATATTTATATT
1 TATAATTATATT
*
37289614 TAT-ATT-TATC
1 TATAATTATATT
* *
37289624 TGTAATTATTTT
1 TATAATTATATT
*
37289636 TATAATCTATATG
1 TATAAT-TATATT
37289649 TATATATT-TATT
1 TATA-ATTATATT
37289661 T
1 T
37289662 TAGTATATAT
Statistics
Matches: 55, Mismatches: 10, Indels: 11
0.72 0.13 0.14
Matches are distributed among these distances:
10 11 0.20
11 9 0.16
12 24 0.44
13 9 0.16
14 2 0.04
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.63
Consensus pattern (12 bp):
TATAATTATATT
Found at i:37294785 original size:22 final size:22
Alignment explanation
Indices: 37294760--37294831 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 22
37294750 GTGGGAATTA
37294760 TTATTTATAAAATTTGATATTT
1 TTATTTATAAAATTTGATATTT
* *
37294782 TTATTAATAAAA-AT-ATATTT
1 TTATTTATAAAATTTGATATTT
37294802 TT-TTTAT--AATTTGGATATTT
1 TTATTTATAAAATTT-GATATTT
*
37294822 TATATATATA
1 T-TATTTATA
37294832 CATATAAGTA
Statistics
Matches: 39, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
17 2 0.05
18 1 0.03
19 4 0.10
20 15 0.38
21 2 0.05
22 15 0.38
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (22 bp):
TTATTTATAAAATTTGATATTT
Found at i:37297452 original size:15 final size:15
Alignment explanation
Indices: 37297417--37297455 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
37297407 ATATATATAC
*
37297417 ATGTAGTGAAAAAAA
1 ATGTATTGAAAAAAA
*
37297432 AT-TATTGAAAAAAG
1 ATGTATTGAAAAAAA
37297446 ATGTATTGAA
1 ATGTATTGAA
37297456 TTGTTGACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.54, C:0.00, G:0.18, T:0.28
Consensus pattern (15 bp):
ATGTATTGAAAAAAA
Found at i:37297544 original size:28 final size:28
Alignment explanation
Indices: 37297512--37297583 Score: 108
Period size: 28 Copynumber: 2.6 Consensus size: 28
37297502 TAATGGGATT
* *
37297512 AGCACTAAGTGTGCGAGTTTAATTGTAA
1 AGCACTAAGTGTGCGAGATTAATTATAA
* *
37297540 AGCACTAAGTGTGCGAGATTGATTATTA
1 AGCACTAAGTGTGCGAGATTAATTATAA
37297568 AGCACTAAGTGTGCGA
1 AGCACTAAGTGTGCGA
37297584 ACTTATTAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGATTAATTATAA
Found at i:37297589 original size:24 final size:24
Alignment explanation
Indices: 37297512--37297592 Score: 63
Period size: 28 Copynumber: 3.0 Consensus size: 24
37297502 TAATGGGATT
* *
37297512 AGCACTAAGTGTGCGAGTTTAATTGTAA
1 AGCACTAAGTGTGCGA----AATTATTA
37297540 AGCACTAAGTGTGCGAGATTGATTATTA
1 AGCACTAAGTGTGCGA-A---ATTATTA
*
37297568 AGCACTAAGTGTGCGAACTTATTA
1 AGCACTAAGTGTGCGAAATTATTA
37297592 A
1 A
37297593 ATATTTTCGA
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
24 7 0.15
25 1 0.02
27 1 0.02
28 37 0.80
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.31
Consensus pattern (24 bp):
AGCACTAAGTGTGCGAAATTATTA
Found at i:37298379 original size:70 final size:70
Alignment explanation
Indices: 37298304--37298660 Score: 480
Period size: 70 Copynumber: 5.1 Consensus size: 70
37298294 TTTGATGCTT
* * * * *
37298304 AAATGTTCCCCAATTCGTTGTATTTATGCTGCCTAAATTGTTGTATATATGCTATCCAATTTTGA
1 AAATGTTGCTCAATTTGTTGTATATATGCTGCCTAAATTGTTGTATATATGCTGTCCAATTTTGA
37298369 TGTAA
66 TGTAA
* * *
37298374 AAATGTTGCTCAATTTGGTATATATATGCTGCCTAAATTGTTGTACATATGCTGTCCAATTTTGA
1 AAATGTTGCTCAATTTGTTGTATATATGCTGCCTAAATTGTTGTATATATGCTGTCCAATTTTGA
37298439 TGTAA
66 TGTAA
* *
37298444 AAATGTTGCTCAATTTGGTATATATATGCTGCCTAAATTGTTGTATATATGCTGTCCAATTTTGA
1 AAATGTTGCTCAATTTGTTGTATATATGCTGCCTAAATTGTTGTATATATGCTGTCCAATTTTGA
37298509 TGTAA
66 TGTAA
* * * * * *
37298514 AATTGTTGCTCAATTTGGTATTTATATGCTGCCCAATTTGTTGTATATATGCTGTCCAATTTTTG
1 AAATGTTGCTCAATTTGTTGTATATATGCTGCCTAAATTGTTGTATATATGCTGTCCAA-TTTTG
*
37298579 GTGTAA
65 ATGTAA
* * * *
37298585 AAATGCTGCTCGATTTTGTTGTATATATGCTGCCCAAATTGTTGTATATATGTTGTCCAAATTTT
1 AAATGTTGCTC-AATTTGTTGTATATATGCTGCCTAAATTGTTGTATATATGCTGTCC-AATTTT
* *
37298650 GGTGTGA
64 GATGTAA
37298657 AAAT
1 AAAT
37298661 ACTGTCTAGT
Statistics
Matches: 261, Mismatches: 23, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
70 186 0.71
71 19 0.07
72 54 0.21
73 2 0.01
ACGTcount: A:0.27, C:0.13, G:0.17, T:0.43
Consensus pattern (70 bp):
AAATGTTGCTCAATTTGTTGTATATATGCTGCCTAAATTGTTGTATATATGCTGTCCAATTTTGA
TGTAA
Found at i:37298544 original size:140 final size:142
Alignment explanation
Indices: 37298328--37298701 Score: 515
Period size: 140 Copynumber: 2.6 Consensus size: 142
37298318 TCGTTGTATT
* *
37298328 TATGCTGCCTAAATTGTTGTATATATGCTATCCAATTTTGATGTAAAAATGTTGCTCAATTTGGT
1 TATGCTGCCTAAATTGTTGTATATATGCTGTCCAATTTTGATGTAAAATTGTTGCTCAATTTGGT
* *
37298393 ATATATATGCTGCCTAAATTGTTGTACATATGCTGTCCAA-TTTTGATGTAAAAATGTTGCTC-A
66 ATATATATGCTGCCCAAATTGTTGTACATATGCTGTCCAATTTTTGATGTAAAAATGCTGCTCGA
37298456 ATTTGGTATATA
131 ATTTGGTATATA
37298468 TATGCTGCCTAAATTGTTGTATATATGCTGTCCAATTTTGATGTAAAATTGTTGCTCAATTTGGT
1 TATGCTGCCTAAATTGTTGTATATATGCTGTCCAATTTTGATGTAAAATTGTTGCTCAATTTGGT
* * * *
37298533 ATTTATATGCTGCCCAATTTGTTGTATATATGCTGTCCAATTTTTGGTGTAAAAATGCTGCTCGA
66 ATATATATGCTGCCCAAATTGTTGTACATATGCTGTCCAATTTTTGATGTAAAAATGCTGCTCGA
* * *
37298598 TTTTGTTGTATA
131 ATTTGGTATATA
* * * *
37298610 TATGCTGCCCAAATTGTTGTATATATGTTGTCCAAATTTTGGTGTGAAAATACTG-T-CT-AGTT
1 TATGCTGCCTAAATTGTTGTATATATGCTGTCC-AATTTTGATGT-AAAAT--TGTTGCTCAATT
* * *
37298672 TGGTATATAAATGCTGTCCAAATTGATGTA
62 TGGTATATATATGCTGCCCAAATTGTTGTA
37298702 TAAGGGCTGT
Statistics
Matches: 208, Mismatches: 20, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
140 99 0.48
141 20 0.10
142 41 0.20
143 38 0.18
144 7 0.03
145 1 0.00
146 2 0.01
ACGTcount: A:0.27, C:0.12, G:0.18, T:0.43
Consensus pattern (142 bp):
TATGCTGCCTAAATTGTTGTATATATGCTGTCCAATTTTGATGTAAAATTGTTGCTCAATTTGGT
ATATATATGCTGCCCAAATTGTTGTACATATGCTGTCCAATTTTTGATGTAAAAATGCTGCTCGA
ATTTGGTATATA
Found at i:37298647 original size:23 final size:22
Alignment explanation
Indices: 37298313--37298636 Score: 191
Period size: 23 Copynumber: 13.9 Consensus size: 22
37298303 TAAATGTTCC
* *
37298313 CCAATTCGTTGTATTTATGCTG
1 CCAATTTGTTGTATATATGCTG
* *
37298335 CCTAAATTGTTGTATATATGCTAT
1 CC-AATTTGTTGTATATATGCT-G
* * * *
37298359 CCAATTTTGATGTAAAAATGTTG
1 CCAA-TTTGTTGTATATATGCTG
* *
37298382 CTCAATTTGGTATATATATGCTG
1 C-CAATTTGTTGTATATATGCTG
* *
37298405 CCTAAATTGTTGTACATATGCTG
1 CC-AATTTGTTGTATATATGCTG
* * * *
37298428 TCCAATTTTGATGTAAAAATGTTG
1 -CCAA-TTTGTTGTATATATGCTG
* *
37298452 CTCAATTTGGTATATATATGCTG
1 C-CAATTTGTTGTATATATGCTG
*
37298475 CCTAAATTGTTGTATATATGCTG
1 CC-AATTTGTTGTATATATGCTG
* * *
37298498 TCCAATTTTGATGTA-AAATTGTTG
1 -CCAA-TTTGTTGTATATA-TGCTG
* * *
37298522 CTCAATTTGGTATTTATATGCTG
1 C-CAATTTGTTGTATATATGCTG
37298545 CCCAATTTGTTGTATATATGCTG
1 -CCAATTTGTTGTATATATGCTG
* * *
37298568 TCCAATTTTTGGTGTAAAAATGCTG
1 -CCAA--TTTGTTGTATATATGCTG
*
37298593 CTCGATTTTGTTGTATATATGCTG
1 C-C-AATTTGTTGTATATATGCTG
*
37298617 CCCAAATTGTTGTATATATG
1 -CCAATTTGTTGTATATATG
37298637 TTGTCCAAAT
Statistics
Matches: 228, Mismatches: 54, Indels: 39
0.71 0.17 0.12
Matches are distributed among these distances:
22 4 0.02
23 135 0.59
24 71 0.31
25 17 0.07
26 1 0.00
ACGTcount: A:0.26, C:0.13, G:0.17, T:0.44
Consensus pattern (22 bp):
CCAATTTGTTGTATATATGCTG
Found at i:37298704 original size:23 final size:23
Alignment explanation
Indices: 37298313--37298703 Score: 177
Period size: 23 Copynumber: 16.7 Consensus size: 23
37298303 TAAATGTTCC
* * *
37298313 CCAATTCGTTGTATTTATGCTG-
1 CCAATTTGGTGTATATATGCTGT
* * *
37298335 CCTAAATTGTTGTATATATGCTAT
1 CC-AATTTGGTGTATATATGCTGT
* * * *
37298359 CCAATTTTGATGTAAAAATGTTG-
1 CCAA-TTTGGTGTATATATGCTGT
*
37298382 CTCAATTTGGTATATATATGCTG-
1 C-CAATTTGGTGTATATATGCTGT
* * *
37298405 CCTAAATTGTTGTACATATGCTGT
1 CC-AATTTGGTGTATATATGCTGT
* * * *
37298429 CCAATTTTGATGTAAAAATGTTG-
1 CCAA-TTTGGTGTATATATGCTGT
*
37298452 CTCAATTTGGTATATATATGCTG-
1 C-CAATTTGGTGTATATATGCTGT
* *
37298475 CCTAAATTGTTGTATATATGCTGT
1 CC-AATTTGGTGTATATATGCTGT
* * *
37298499 CCAATTTTGATGTA-AAATTGTTG-
1 CCAA-TTTGGTGTATATA-TGCTGT
* * *
37298522 CTCAATTTGGTATTTATATGCTGC
1 C-CAATTTGGTGTATATATGCTGT
*
37298546 CCAATTTGTTGTATATATGCTGT
1 CCAATTTGGTGTATATATGCTGT
* *
37298569 CCAATTTTTGGTGTAAAAATGCTGCT
1 CCAA--TTTGGTGTATATATGCTG-T
* * * *
37298595 CGATTTTGTTGTATATATGCTGC
1 CCAATTTGGTGTATATATGCTGT
* * *
37298618 CCAAATTGTTGTATATATGTTGT
1 CCAATTTGGTGTATATATGCTGT
* *
37298641 CCAAATTTTGGTGTGA-AAATACTGT
1 CC-AA-TTTGGTGT-ATATATGCTGT
* * * *
37298666 CTAGTTTGGTATATAAATGCTGT
1 CCAATTTGGTGTATATATGCTGT
* *
37298689 CCAAATTGATGTATA
1 CCAATTTGGTGTATA
37298704 AGGGCTGTCC
Statistics
Matches: 274, Mismatches: 73, Indels: 43
0.70 0.19 0.11
Matches are distributed among these distances:
22 5 0.02
23 165 0.60
24 72 0.26
25 28 0.10
26 4 0.01
ACGTcount: A:0.27, C:0.13, G:0.18, T:0.43
Consensus pattern (23 bp):
CCAATTTGGTGTATATATGCTGT
Found at i:37299221 original size:27 final size:26
Alignment explanation
Indices: 37299191--37299504 Score: 349
Period size: 27 Copynumber: 11.5 Consensus size: 26
37299181 AGACCCTAAA
37299191 ATAGGGTAAAATGATCGAAATACCCC
1 ATAGGGTAAAATGATCGAAATACCCC
* * *
37299217 GATAGGGTAAAAAGACCAAAATACCCTC
1 -ATAGGGTAAAATGATCGAAATACCC-C
* *
37299245 ATAGGGTAAAATGACCAAAATACCCCC
1 ATAGGGTAAAATGATCGAAATA-CCCC
* *
37299272 ATAAGGTAAAATGATCGCAATACCCC
1 ATAGGGTAAAATGATCGAAATACCCC
* * *
37299298 TAATAGAGTAAAATGACCAAAATACCCC
1 --ATAGGGTAAAATGATCGAAATACCCC
*
37299326 TATAGGGTAAAATGATTGAAATACCCC
1 -ATAGGGTAAAATGATCGAAATACCCC
* *
37299353 AAATAGGGTAAAATAACCGAAATACCCTC
1 --ATAGGGTAAAATGATCGAAATACCC-C
37299382 ATAGGGTAAAATGATCGAAATACTCCC
1 ATAGGGTAAAATGATCGAAATAC-CCC
*
37299409 ATAGGATAAAATGATCGAAATACCCCC
1 ATAGGGTAAAATGATCGAAATA-CCCC
* *
37299436 ATAGGGTAAAATGACCAAAATACCCCC
1 ATAGGGTAAAATGATCGAAATA-CCCC
*
37299463 ATTAGGATAAAATGATCGAAATACCCTC
1 A-TAGGGTAAAATGATCGAAATACCC-C
37299491 ATAGGGTAAAATGA
1 ATAGGGTAAAATGA
37299505 CTGTTATACC
Statistics
Matches: 245, Mismatches: 32, Indels: 20
0.82 0.11 0.07
Matches are distributed among these distances:
26 4 0.02
27 170 0.69
28 70 0.29
29 1 0.00
ACGTcount: A:0.45, C:0.20, G:0.16, T:0.19
Consensus pattern (26 bp):
ATAGGGTAAAATGATCGAAATACCCC
Found at i:37299324 original size:55 final size:55
Alignment explanation
Indices: 37299190--37299504 Score: 375
Period size: 55 Copynumber: 5.8 Consensus size: 55
37299180 GAGACCCTAA
* * * * *
37299190 AATAGGGTAAAATGATCGAAATACCCCGATAGGGTAAAAAGACCAAAATA-CCCT
1 AATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCT
* * * *
37299244 CATAGGGTAAAATGACCAAAATACCCCCATAAGGTAAAATGATCGCAATACCCCT
1 AATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCT
* * * * *
37299299 AATAGAGTAAAATGACCAAAATACCCCTATAGGGTAAAATGATTGAAATACCCCA
1 AATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCT
* *
37299354 AATAGGGTAAAATAACCGAAATACCCTCATAGGGTAAAATGATCGAAATACTCCC-
1 AATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATAC-CCCT
* * * * *
37299409 -ATAGGATAAAATGATCGAAATACCCCCATAGGGTAAAATGACCAAAATACCCCC
1 AATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCT
* * * *
37299463 ATTAGGATAAAATGATCGAAATACCCTCATAGGGTAAAATGA
1 AATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGA
37299505 CTGTTATACC
Statistics
Matches: 227, Mismatches: 30, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
53 3 0.01
54 85 0.37
55 136 0.60
56 3 0.01
ACGTcount: A:0.45, C:0.20, G:0.16, T:0.19
Consensus pattern (55 bp):
AATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCT
Found at i:37299331 original size:82 final size:82
Alignment explanation
Indices: 37299191--37299505 Score: 368
Period size: 82 Copynumber: 3.9 Consensus size: 82
37299181 AGACCCTAAA
* * *
37299191 ATAGGGTAAAATGATCGAAATACCCC-GATAGGGTAAAAAGACCAAAATACCCTCATAGGGTAAA
1 ATAGGGTAAAATGACCGAAATACCCCTAATAGGGTAAAATGACCAAAATACCCTCATAGGGTAAA
*
37299255 ATGACCAAAATACCCCC
66 ATGACCGAAATACCCCC
* * * *
37299272 ATAAGGTAAAATGATCGCAATACCCCTAATAGAGTAAAATGACCAAAATACCC-CTATAGGGTAA
1 ATAGGGTAAAATGACCGAAATACCCCTAATAGGGTAAAATGACCAAAATACCCTC-ATAGGGTAA
** *
37299336 AATGATTGAAATACCCCAA
65 AATGACCGAAATACCCC-C
* * * * *
37299355 ATAGGGTAAAATAACCGAAATA-CCCTCATAGGGTAAAATGATCGAAATACTCC-CATAGGATAA
1 ATAGGGTAAAATGACCGAAATACCCCTAATAGGGTAAAATGACCAAAATAC-CCTCATAGGGTAA
*
37299418 AATGATCGAAATACCCCC
65 AATGACCGAAATACCCCC
* * * * * *
37299436 ATAGGGTAAAATGACCAAAATACCCCCATTAGGATAAAATGATCGAAATACCCTCATAGGGTAAA
1 ATAGGGTAAAATGACCGAAATACCCCTAATAGGGTAAAATGACCAAAATACCCTCATAGGGTAAA
37299501 ATGAC
66 ATGAC
37299506 TGTTATACCC
Statistics
Matches: 200, Mismatches: 28, Indels: 11
0.84 0.12 0.05
Matches are distributed among these distances:
81 47 0.23
82 132 0.66
83 21 0.10
ACGTcount: A:0.44, C:0.20, G:0.16, T:0.19
Consensus pattern (82 bp):
ATAGGGTAAAATGACCGAAATACCCCTAATAGGGTAAAATGACCAAAATACCCTCATAGGGTAAA
ATGACCGAAATACCCCC
Found at i:37303508 original size:21 final size:22
Alignment explanation
Indices: 37303464--37303515 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
37303454 TACTTGATTA
* *
37303464 TTAACTAAGTAACTAATTACCC
1 TTAATTAAGTAACTAATCACCC
*
37303486 TTAATTAAGT-ACTTATCACCC
1 TTAATTAAGTAACTAATCACCC
*
37303507 TTAGTTAAG
1 TTAATTAAG
37303516 AATACCATCT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
21 17 0.65
22 9 0.35
ACGTcount: A:0.37, C:0.19, G:0.08, T:0.37
Consensus pattern (22 bp):
TTAATTAAGTAACTAATCACCC
Found at i:37323290 original size:39 final size:40
Alignment explanation
Indices: 37323173--37323357 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
37323163 GCTACTCGTT
*
37323173 CAAATGCCTTCGGGACATAGCCC-GATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
37323213 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
37323253 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
37323292 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
37323333 CAAA-GCCTTCGGGACTCAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37323358 CATCATTCAA
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 74 0.60
41 15 0.12
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:37323290 original size:79 final size:82
Alignment explanation
Indices: 37323173--37323357 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
37323163 GCTACTCGTT
* * *
37323173 CAAATGCCTTCGGGACATAGCCC-GATTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
37323236 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
37323253 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
37323316 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
*
37323333 CAAA-GCCTTCGGGACTCAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37323358 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 52 0.58
80 35 0.39
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:37325787 original size:8 final size:9
Alignment explanation
Indices: 37325769--37325806 Score: 69
Period size: 9 Copynumber: 4.3 Consensus size: 9
37325759 ATCAAATTGC
37325769 AAAGTTTTG
1 AAAGTTTTG
37325778 AAAG-TTTG
1 AAAGTTTTG
37325786 AAAGTTTTG
1 AAAGTTTTG
37325795 AAAGTTTTG
1 AAAGTTTTG
37325804 AAA
1 AAA
37325807 CAGTGAGTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 8 0.29
9 20 0.71
ACGTcount: A:0.39, C:0.00, G:0.21, T:0.39
Consensus pattern (9 bp):
AAAGTTTTG
Found at i:37325791 original size:17 final size:18
Alignment explanation
Indices: 37325769--37325806 Score: 69
Period size: 17 Copynumber: 2.2 Consensus size: 18
37325759 ATCAAATTGC
37325769 AAAGTTTTGAAAG-TTTG
1 AAAGTTTTGAAAGTTTTG
37325786 AAAGTTTTGAAAGTTTTG
1 AAAGTTTTGAAAGTTTTG
37325804 AAA
1 AAA
37325807 CAGTGAGTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.39, C:0.00, G:0.21, T:0.39
Consensus pattern (18 bp):
AAAGTTTTGAAAGTTTTG
Found at i:37335274 original size:20 final size:21
Alignment explanation
Indices: 37335245--37335304 Score: 67
Period size: 17 Copynumber: 3.1 Consensus size: 21
37335235 GCCAAAACAG
37335245 AGTACAAAAATTGGCGACATA
1 AGTACAAAAATTGGCGACATA
* *
37335266 AGT-CAAAAA-T--AGACA-C
1 AGTACAAAAATTGGCGACATA
37335282 AGTACAAAAATTGGCGACATA
1 AGTACAAAAATTGGCGACATA
37335303 AG
1 AG
37335305 ACCACACGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 10
0.68 0.09 0.23
Matches are distributed among these distances:
16 3 0.10
17 10 0.33
18 1 0.03
19 1 0.03
20 10 0.33
21 5 0.17
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.17
Consensus pattern (21 bp):
AGTACAAAAATTGGCGACATA
Found at i:37336689 original size:20 final size:20
Alignment explanation
Indices: 37336664--37336771 Score: 101
Period size: 20 Copynumber: 5.4 Consensus size: 20
37336654 GAATCCAAAC
*
37336664 CAGGGGCACAAATGTGCAAT
1 CAGGGGCACAAAAGTGCAAT
37336684 CAGGGGCACAAAAGTGCAAT
1 CAGGGGCACAAAAGTGCAAT
** *
37336704 CACAGGCAGAAAAGTGCAAT
1 CAGGGGCACAAAAGTGCAAT
** **
37336724 CAGGGGCATC-GGAGTGTGAT
1 CAGGGGCA-CAAAAGTGCAAT
* *
37336744 CAAGGGCACCAAAGTGCAAT
1 CAGGGGCACAAAAGTGCAAT
*
37336764 CAGCGGCA
1 CAGGGGCA
37336772 TGAAAGTGTA
Statistics
Matches: 68, Mismatches: 18, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
19 1 0.01
20 67 0.99
ACGTcount: A:0.35, C:0.21, G:0.31, T:0.12
Consensus pattern (20 bp):
CAGGGGCACAAAAGTGCAAT
Found at i:37336777 original size:20 final size:20
Alignment explanation
Indices: 37336668--37336784 Score: 73
Period size: 20 Copynumber: 5.8 Consensus size: 20
37336658 CCAAACCAGG
*
37336668 GGCAC-AAATGTGCAATCAGG
1 GGCACGAAA-GTGCAATCAGC
*
37336688 GGCACAAAAGTGCAATCA-C
1 GGCACGAAAGTGCAATCAGC
*
37336707 AGGCA-GAAAAGTGCAATCAGG
1 -GGCACG-AAAGTGCAATCAGC
* **
37336728 GGCATCG-GAGTGTGATCAAG-
1 GGCA-CGAAAGTGCAATC-AGC
*
37336748 GGCACCAAAGTGCAATCAGC
1 GGCACGAAAGTGCAATCAGC
* *
37336768 GGCATGAAAGTGTAATC
1 GGCACGAAAGTGCAATC
37336785 GAGGCACTGG
Statistics
Matches: 75, Mismatches: 13, Indels: 18
0.71 0.12 0.17
Matches are distributed among these distances:
19 3 0.04
20 66 0.88
21 5 0.07
22 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.30, T:0.15
Consensus pattern (20 bp):
GGCACGAAAGTGCAATCAGC
Found at i:37338352 original size:18 final size:19
Alignment explanation
Indices: 37338325--37338360 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
37338315 AAAGAAAATA
37338325 GAAAATTTTGGGAAACCAT
1 GAAAATTTTGGGAAACCAT
37338344 GAAAA-TTTGGGAAACCA
1 GAAAATTTTGGGAAACCA
37338361 GGGTCACACA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.22
Consensus pattern (19 bp):
GAAAATTTTGGGAAACCAT
Found at i:37339463 original size:24 final size:24
Alignment explanation
Indices: 37339415--37339461 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
37339405 ACTGGTCATA
*
37339415 GAGAGAATTGAGGAGGGATATTTG
1 GAGAGAATTGAGGAGGAATATTTG
*
37339439 GAGAGATTTGAGGAGAGAATATT
1 GAGAGAATTGAGGAG-GAATATT
37339462 GGGATTTGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.36, C:0.00, G:0.38, T:0.26
Consensus pattern (24 bp):
GAGAGAATTGAGGAGGAATATTTG
Found at i:37340608 original size:27 final size:27
Alignment explanation
Indices: 37340577--37340857 Score: 366
Period size: 27 Copynumber: 10.4 Consensus size: 27
37340567 CCCAAAATAA
37340577 GGTAAAATGACCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
37340604 GGTAAAAT-ACCAAAATACCCTCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
37340630 GGTAAAATGATCGAAATACCCCTAATAG
1 GGTAAAATGACCGAAATACCCC-CATAG
*
37340658 GGTAAAATGACCAAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
37340685 GGTAAAATGATCGAAGTACCCTCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
37340712 GTTAAAATGATCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
*
37340739 GGTAAAATGATCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * * ** *
37340766 GATAAAATGATCAAAATACCCTAATAA
1 GGTAAAATGACCGAAATACCCCCATAG
* *
37340793 GGTAAAATGACCAAAATACCCTCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
*
37340820 GGTAAAATGACTGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
37340847 GGTAAAATGAC
1 GGTAAAATGAC
37340858 TATTATACCC
Statistics
Matches: 223, Mismatches: 29, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 24 0.11
27 175 0.78
28 24 0.11
ACGTcount: A:0.43, C:0.21, G:0.16, T:0.19
Consensus pattern (27 bp):
GGTAAAATGACCGAAATACCCCCATAG
Found at i:37340739 original size:81 final size:80
Alignment explanation
Indices: 37340577--37340856 Score: 409
Period size: 81 Copynumber: 3.5 Consensus size: 80
37340567 CCCAAAATAA
*
37340577 GGTAAAATGACCGAAATACCCCCATAGGGTAAAAT-ACCAAAATACCCTCATAGGGTAAAATGAT
1 GGTAAAATGACCGAAATACCCCCATAGGGTAAAATGATCAAAATACCCTCATA-GGTAAAATGAT
*
37340641 CGAAATACCCCTAATAG
65 CGAAATACCCC-CATAG
* * *
37340658 GGTAAAATGACCAAAATACCCCCATAGGGTAAAATGATCGAAGTACCCTCATAGGTTAAAATGAT
1 GGTAAAATGACCGAAATACCCCCATAGGGTAAAATGATCAAAATACCCTCATAGG-TAAAATGAT
37340723 CGAAATACCCCCATAG
65 CGAAATACCCCCATAG
* * * *
37340739 GGTAAAATGATCGAAATACCCCCATAGGATAAAATGATCAAAATACCCTAATAAGGTAAAATGAC
1 GGTAAAATGACCGAAATACCCCCATAGGGTAAAATGATCAAAATACCCTCAT-AGGTAAAATGAT
* *
37340804 CAAAATACCCTCATAG
65 CGAAATACCCCCATAG
*
37340820 GGTAAAATGACTGAAATACCCCCATAGGGTAAAATGA
1 GGTAAAATGACCGAAATACCCCCATAGGGTAAAATGA
37340857 CTATTATACC
Statistics
Matches: 179, Mismatches: 17, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
81 142 0.79
82 37 0.21
ACGTcount: A:0.44, C:0.21, G:0.16, T:0.19
Consensus pattern (80 bp):
GGTAAAATGACCGAAATACCCCCATAGGGTAAAATGATCAAAATACCCTCATAGGTAAAATGATC
GAAATACCCCCATAG
Found at i:37343051 original size:39 final size:39
Alignment explanation
Indices: 37342981--37343102 Score: 217
Period size: 39 Copynumber: 3.1 Consensus size: 39
37342971 AATCTAACGA
37342981 GTAAGTTCGTAAATATTATTATTTAATATTTATGAGTCAAAT
1 GTAAGTTCGT-AA-A-TATTATTTAATATTTATGAGTCAAAT
37343023 GTAAGTTCGTAAATATTATTTAATATTTATGAGTCAAAT
1 GTAAGTTCGTAAATATTATTTAATATTTATGAGTCAAAT
37343062 GTAAGTTCGTAAATATTATTTAATATTTATGAGTCAAAT
1 GTAAGTTCGTAAATATTATTTAATATTTATGAGTCAAAT
37343101 GT
1 GT
37343103 GATTTTAAAA
Statistics
Matches: 80, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
39 67 0.84
40 1 0.01
41 2 0.03
42 10 0.12
ACGTcount: A:0.38, C:0.05, G:0.13, T:0.44
Consensus pattern (39 bp):
GTAAGTTCGTAAATATTATTTAATATTTATGAGTCAAAT
Found at i:37347187 original size:44 final size:44
Alignment explanation
Indices: 37347151--37347626 Score: 583
Period size: 44 Copynumber: 11.0 Consensus size: 44
37347141 TGACAGGATC
* * * * *
37347151 TACAATCTTCCTCCTATTCCATTGTTGTTCAGGGTGAC-AAGATC-
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAG-CTAGGA-CA
* *
37347195 TACAATTTTCCACCTATTCCACCGCTGTTCAGGGAGCTAGGACA
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
* * ** *
37347239 TGCAATCTTCCACCTATTTCACTGCAATTCTGGGAGCTAGGACA
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
* *
37347283 TACAATCTTCCACCTATTCCACTACTGTTCAAGGAGCTAGGACA
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
37347327 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
* *
37347371 TGCAATCTTCCACCTATTCGACTGCTGTTCAGGGAGCTAGGACA
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
* * *
37347415 TACAATCTTCTACCTATTCCA---CTGTT---GGAGATAGGACT
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
* * * *
37347453 TATAGTTTTCCA-CTATTCCACTGCTGTTCAGGGAGTTAGGACA
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
*
37347496 TACAATCTTCCACCTATTCCACTACTGTTCAGGGAGCTAGGACA
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
* * *
37347540 TGCAATCTTCCACCTATTCCACTGCTATTTAGGGAGCTAGGACA
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
* *** *
37347584 TACAATCTTTCACCTATTCCACAATTGTTCAGGGAGATAGGAC
1 TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGAC
37347627 TTATAGTTTC
Statistics
Matches: 370, Mismatches: 53, Indels: 18
0.84 0.12 0.04
Matches are distributed among these distances:
37 8 0.02
38 18 0.05
40 5 0.01
41 5 0.01
43 21 0.06
44 313 0.85
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.30
Consensus pattern (44 bp):
TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGCTAGGACA
Found at i:37365049 original size:20 final size:20
Alignment explanation
Indices: 37365024--37365064 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
37365014 TATTCTCTGA
37365024 AAAGTTTCAATTATGTAATG
1 AAAGTTTCAATTATGTAATG
37365044 AAAGTTTCAATTATGTAATG
1 AAAGTTTCAATTATGTAATG
37365064 A
1 A
37365065 TGTAAAGGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.41, C:0.05, G:0.15, T:0.39
Consensus pattern (20 bp):
AAAGTTTCAATTATGTAATG
Found at i:37371429 original size:28 final size:28
Alignment explanation
Indices: 37371395--37371453 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
37371385 CAGTAAAGTG
*
37371395 TGGGCCTTAGCCTAATACAGAAACAGTA
1 TGGGCCTAAGCCTAATACAGAAACAGTA
* * *
37371423 TGGGCCTAAGCCTGATACAGTATCAGTA
1 TGGGCCTAAGCCTAATACAGAAACAGTA
37371451 TGG
1 TGG
37371454 TGCAAGTATG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (28 bp):
TGGGCCTAAGCCTAATACAGAAACAGTA
Found at i:37371732 original size:32 final size:32
Alignment explanation
Indices: 37371660--37371926 Score: 218
Period size: 32 Copynumber: 8.4 Consensus size: 32
37371650 GAATGGCTAC
* * * *
37371660 AAGCCATAAGT-ACAGTAATGTGATTGGCACA
1 AAGCCATCAGTAACAGTGATATGATCGGCACA
* * *
37371691 AAGCTATCAGTAGCAGTGATATGACCGGCACA
1 AAGCCATCAGTAACAGTGATATGATCGGCACA
* * *
37371723 CAGCCATCAGTAGCAGTGATATGATCGACACA
1 AAGCCATCAGTAACAGTGATATGATCGGCACA
* * * * * * *
37371755 CAGCCATTAGTAACGGTAACATGATTGGTACA
1 AAGCCATCAGTAACAGTGATATGATCGGCACA
* * *
37371787 AAGCCATCAGTAGCAGTGATATGACCGGTACA
1 AAGCCATCAGTAACAGTGATATGATCGGCACA
* *
37371819 CAA-CCATCAGTAACAGTGAAATGATTGGCACA
1 -AAGCCATCAGTAACAGTGATATGATCGGCACA
* * * *
37371851 CAGACATC-GATAACGGTAATATGATCGGCACA
1 AAGCCATCAG-TAACAGTGATATGATCGGCACA
* * *
37371883 AAGCCATCAGTAACGGT-ACTATGACCGACACA
1 AAGCCATCAGTAACAGTGA-TATGATCGGCACA
37371915 AAGCCATCAGTA
1 AAGCCATCAGTA
37371927 GCATCGTAGC
Statistics
Matches: 188, Mismatches: 42, Indels: 11
0.78 0.17 0.05
Matches are distributed among these distances:
31 12 0.06
32 173 0.92
33 3 0.02
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (32 bp):
AAGCCATCAGTAACAGTGATATGATCGGCACA
Found at i:37371851 original size:96 final size:96
Alignment explanation
Indices: 37371680--37371926 Score: 311
Period size: 96 Copynumber: 2.6 Consensus size: 96
37371670 TACAGTAATG
* * * *
37371680 TGATTGGCACAAAGCTATCAGTAGCAGTGATATGACCGGCACACAGCCATCAGTAGCAGTGATAT
1 TGATTGGCACAAAGCCATCAGTAGCAGTGATATGACCGGCACACAACCATCAGTAACAGTGAAAT
*
37371745 GATCGACACACAGCCATTAG-TAACGGTAACA
66 GATCGACACACAGACA-TAGATAACGGTAACA
* *
37371776 TGATTGGTACAAAGCCATCAGTAGCAGTGATATGACCGGTACACAACCATCAGTAACAGTGAAAT
1 TGATTGGCACAAAGCCATCAGTAGCAGTGATATGACCGGCACACAACCATCAGTAACAGTGAAAT
* * * *
37371841 GATTGGCACACAGACATCGATAACGGTAATA
66 GATCGACACACAGACATAGATAACGGTAACA
* * * *
37371872 TGATCGGCACAAAGCCATCAGTAACGGT-ACTATGACCGACACA-AAGCCATCAGTA
1 TGATTGGCACAAAGCCATCAGTAGCAGTGA-TATGACCGGCACACAA-CCATCAGTA
37371927 GCATCGTAGC
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
95 5 0.04
96 126 0.96
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.19
Consensus pattern (96 bp):
TGATTGGCACAAAGCCATCAGTAGCAGTGATATGACCGGCACACAACCATCAGTAACAGTGAAAT
GATCGACACACAGACATAGATAACGGTAACA
Found at i:37372000 original size:27 final size:27
Alignment explanation
Indices: 37371970--37372033 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
37371960 AGCAAAGCTG
*
37371970 CCAGTAATAGT-ATATGTGGCCA-AGCCA
1 CCAGTAACAGTGAT-TGTGG-CAGAGCCA
37371997 CCAGTAACAGTGATTGTGGCAGAGCCA
1 CCAGTAACAGTGATTGTGGCAGAGCCA
37372024 CCAGT-ACAGT
1 CCAGTAACAGT
37372034 ACTTCCTCCA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
26 7 0.21
27 25 0.74
28 2 0.06
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.20
Consensus pattern (27 bp):
CCAGTAACAGTGATTGTGGCAGAGCCA
Found at i:37372125 original size:24 final size:23
Alignment explanation
Indices: 37372098--37372156 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 23
37372088 TCATGCTCAG
37372098 AATCAGTCATTCAAATCACAGACA
1 AATCAGTCATTCAAA-CACAGACA
*
37372122 AATCAGTCATACCAAACACAGACA
1 AATCAGTCAT-TCAAACACAGACA
*
37372146 AATCAATCATT
1 AATCAGTCATT
37372157 TAAGTCATAC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 27 0.87
25 4 0.13
ACGTcount: A:0.47, C:0.25, G:0.07, T:0.20
Consensus pattern (23 bp):
AATCAGTCATTCAAACACAGACA
Found at i:37372165 original size:33 final size:33
Alignment explanation
Indices: 37372126--37372192 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
37372116 CAGACAAATC
37372126 AGTCATACCAAACACAGACAAATCAATCATTTA
1 AGTCATACCAAACACAGACAAATCAATCATTTA
37372159 AGTCATACCAAACACAGACAAATCAATCATTTA
1 AGTCATACCAAACACAGACAAATCAATCATTTA
37372192 A
1 A
37372193 CTATAGACAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.49, C:0.24, G:0.06, T:0.21
Consensus pattern (33 bp):
AGTCATACCAAACACAGACAAATCAATCATTTA
Found at i:37372292 original size:27 final size:27
Alignment explanation
Indices: 37372253--37372390 Score: 206
Period size: 27 Copynumber: 5.1 Consensus size: 27
37372243 CCACCAGAGC
* *
37372253 ATTACAGTTATTTTACCCTATAGGGGT
1 ATTACGGTCATTTTACCCTATAGGGGT
* *
37372280 ATTACGGTCATTTTACCCTACAGGGGC
1 ATTACGGTCATTTTACCCTATAGGGGT
* *
37372307 ATTACGGTCATTTTACCCTACAGGGGC
1 ATTACGGTCATTTTACCCTATAGGGGT
37372334 ATTACGGTCATTTTACCCTATAGGGGT
1 ATTACGGTCATTTTACCCTATAGGGGT
37372361 ATTACGGTCATTTTACCCTAT-GAGGGT
1 ATTACGGTCATTTTACCCTATAG-GGGT
37372388 ATT
1 ATT
37372391 TCGGGATTCT
Statistics
Matches: 104, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
26 1 0.01
27 103 0.99
ACGTcount: A:0.23, C:0.20, G:0.21, T:0.36
Consensus pattern (27 bp):
ATTACGGTCATTTTACCCTATAGGGGT
Found at i:37377836 original size:6 final size:6
Alignment explanation
Indices: 37377825--37377853 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
37377815 ATGCATTTTC
37377825 TTCAGG TTCAGG TTCAGG TTCAGG TTCAG
1 TTCAGG TTCAGG TTCAGG TTCAGG TTCAG
37377854 TTTTTGACGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.17, G:0.31, T:0.34
Consensus pattern (6 bp):
TTCAGG
Found at i:37380579 original size:15 final size:15
Alignment explanation
Indices: 37380559--37380588 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
37380549 GATGTTGTAA
*
37380559 GTAATTCGTCTATTT
1 GTAATTCATCTATTT
37380574 GTAATTCATCTATTT
1 GTAATTCATCTATTT
37380589 CGATAAATGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.13, G:0.10, T:0.53
Consensus pattern (15 bp):
GTAATTCATCTATTT
Found at i:37380778 original size:25 final size:27
Alignment explanation
Indices: 37380736--37380787 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
37380726 CATCTATAAC
37380736 ATTTTATTGTTTTATCTTTT-TTTTCT
1 ATTTTATTGTTTTATCTTTTCTTTTCT
37380762 ATTTT-TTGTTGTT-TCTTTTCTTTTCT
1 ATTTTATTGTT-TTATCTTTTCTTTTCT
37380788 GTATGTTCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.08, C:0.10, G:0.06, T:0.77
Consensus pattern (27 bp):
ATTTTATTGTTTTATCTTTTCTTTTCT
Found at i:37388339 original size:42 final size:42
Alignment explanation
Indices: 37388291--37388492 Score: 212
Period size: 42 Copynumber: 4.8 Consensus size: 42
37388281 GCATATCGAA
* *
37388291 AGTTGAACAGAAGCTCATGAGAGCTAAATAGAAAGC-CATAAG
1 AGTTGAACAGAAGCTCATAAGAGCTAAA-AGAAAACTCATAAG
* * * * * *
37388333 GGTTGAATAGAAGCTCGTAAGAGCTGAACGAAAACTCATATG
1 AGTTGAACAGAAGCTCATAAGAGCTAAAAGAAAACTCATAAG
* * *
37388375 AGTTAAACAAAAGCTCATAAGAGCTGAACAG-AAACTCATAAG
1 AGTTGAACAGAAGCTCATAAGAGCT-AAAAGAAAACTCATAAG
* *
37388417 AGTTGAACAGAAGCTCGA-AAGAGCTAAACGAAAACTCATATG
1 AGTTGAACAGAAGCTC-ATAAGAGCTAAAAGAAAACTCATAAG
* * *
37388459 AGTTAAACAAAAGCTCATAAGAGCTAAACGAAAA
1 AGTTGAACAGAAGCTCATAAGAGCTAAAAGAAAA
37388493 GCAAAACATG
Statistics
Matches: 131, Mismatches: 24, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
41 9 0.07
42 119 0.91
43 3 0.02
ACGTcount: A:0.47, C:0.15, G:0.21, T:0.17
Consensus pattern (42 bp):
AGTTGAACAGAAGCTCATAAGAGCTAAAAGAAAACTCATAAG
Found at i:37388447 original size:84 final size:84
Alignment explanation
Indices: 37388291--37388491 Score: 298
Period size: 84 Copynumber: 2.4 Consensus size: 84
37388281 GCATATCGAA
* * * * * * *
37388291 AGTTGAACAGAAGCTCATGAGAGCTAAATAGAAAGCCATAAGGGTTGAATAGAAGCTCGTAAGAG
1 AGTTAAACAAAAGCTCATAAGAGCTAAACAGAAAGCCATAAGAGTTGAACAGAAGCTCGAAAGAG
*
37388356 CTGAACGAAAACTCATATG
66 CTAAACGAAAACTCATATG
*
37388375 AGTTAAACAAAAGCTCATAAGAGCTGAACAGAAA-CTCATAAGAGTTGAACAGAAGCTCGAAAGA
1 AGTTAAACAAAAGCTCATAAGAGCTAAACAGAAAGC-CATAAGAGTTGAACAGAAGCTCGAAAGA
37388439 GCTAAACGAAAACTCATATG
65 GCTAAACGAAAACTCATATG
37388459 AGTTAAACAAAAGCTCATAAGAGCTAAAC-GAAA
1 AGTTAAACAAAAGCTCATAAGAGCTAAACAGAAA
37388492 AGCAAAACAT
Statistics
Matches: 106, Mismatches: 10, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
83 5 0.05
84 101 0.95
ACGTcount: A:0.46, C:0.15, G:0.21, T:0.17
Consensus pattern (84 bp):
AGTTAAACAAAAGCTCATAAGAGCTAAACAGAAAGCCATAAGAGTTGAACAGAAGCTCGAAAGAG
CTAAACGAAAACTCATATG
Found at i:37388486 original size:21 final size:21
Alignment explanation
Indices: 37388296--37388494 Score: 147
Period size: 21 Copynumber: 9.4 Consensus size: 21
37388286 TCGAAAGTTG
* *
37388296 AACAGAAGCTCATGAGAGCTA
1 AACAAAAGCTCATAAGAGCTA
* * * *
37388317 AATAGAAAGC-CATAAGGGTTG
1 AACA-AAAGCTCATAAGAGCTA
* * * *
37388338 AATAGAAGCTCGTAAGAGCTG
1 AACAAAAGCTCATAAGAGCTA
* *
37388359 AACGAAAA-CTCATATGAGTTA
1 AAC-AAAAGCTCATAAGAGCTA
*
37388380 AACAAAAGCTCATAAGAGCTG
1 AACAAAAGCTCATAAGAGCTA
* *
37388401 AACAGAAA-CTCATAAGAGTTG
1 AACA-AAAGCTCATAAGAGCTA
*
37388422 AACAGAAGCTCGA-AAGAGCTA
1 AACAAAAGCTC-ATAAGAGCTA
* *
37388443 AACGAAAA-CTCATATGAGTTA
1 AAC-AAAAGCTCATAAGAGCTA
37388464 AACAAAAGCTCATAAGAGCTA
1 AACAAAAGCTCATAAGAGCTA
37388485 AACGAAAAGC
1 AAC-AAAAGC
37388495 AAAACATGAG
Statistics
Matches: 139, Mismatches: 28, Indels: 21
0.74 0.15 0.11
Matches are distributed among these distances:
20 15 0.11
21 104 0.75
22 20 0.14
ACGTcount: A:0.47, C:0.16, G:0.21, T:0.17
Consensus pattern (21 bp):
AACAAAAGCTCATAAGAGCTA
Found at i:37391467 original size:16 final size:17
Alignment explanation
Indices: 37391446--37391480 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
37391436 TCTTTTTTTT
*
37391446 CTAATTTCCAAA-TTAC
1 CTAATTACCAAATTTAC
37391462 CTAATTACCAAATTTAC
1 CTAATTACCAAATTTAC
37391479 CT
1 CT
37391481 TTTAAATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.37, C:0.26, G:0.00, T:0.37
Consensus pattern (17 bp):
CTAATTACCAAATTTAC
Found at i:37395345 original size:21 final size:21
Alignment explanation
Indices: 37395321--37395362 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
37395311 AAATATAACA
* *
37395321 TCAATTTAATACAATTTACAT
1 TCAATTCAATACAAGTTACAT
*
37395342 TCAATTCAATCCAAGTTACAT
1 TCAATTCAATACAAGTTACAT
37395363 CTTAGGCAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.40, C:0.19, G:0.02, T:0.38
Consensus pattern (21 bp):
TCAATTCAATACAAGTTACAT
Found at i:37396476 original size:68 final size:68
Alignment explanation
Indices: 37396346--37396480 Score: 209
Period size: 68 Copynumber: 2.0 Consensus size: 68
37396336 GAAACTCAGA
* * *
37396346 GAATTTTTCACAAAATTTTAAAATTTTCCAATGTGTAGGGGACACACGCCTGTATGGTCAGGCCG
1 GAATTTTTCACAAAATTTCAAAATTTTCCAAGGTGTAGGGGACACACGCCTGTATGGCCAGGCCG
37396411 TGG
66 TGG
* *
37396414 GAATTTTTCACAAAATTTCAAAATTTTCCAAGGTGTAGGGGACACATG-CTCGTGTGGCCAGGCC
1 GAATTTTTCACAAAATTTCAAAATTTTCCAAGGTGTAGGGGACACACGCCT-GTATGGCCAGGCC
37396478 GTG
65 GTG
37396481 TGGCTCACAC
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
67 2 0.03
68 59 0.97
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (68 bp):
GAATTTTTCACAAAATTTCAAAATTTTCCAAGGTGTAGGGGACACACGCCTGTATGGCCAGGCCG
TGG
Found at i:37403050 original size:24 final size:25
Alignment explanation
Indices: 37403023--37403089 Score: 75
Period size: 24 Copynumber: 2.7 Consensus size: 25
37403013 TTCTCTTCAA
37403023 AGCTACCCATTAATTGCTCTTTG-G
1 AGCTACCCATTAATTGCTCTTTGTG
* *
37403047 AGCTACCCGTT-ATAGGCTCTTTGTG
1 AGCTACCCATTAAT-TGCTCTTTGTG
*
37403072 AGCTTCCCATTATATTGC
1 AGCTACCCATTA-ATTGC
37403090 CCAGATAAGC
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
23 2 0.06
24 18 0.53
25 10 0.29
26 2 0.06
27 2 0.06
ACGTcount: A:0.19, C:0.25, G:0.18, T:0.37
Consensus pattern (25 bp):
AGCTACCCATTAATTGCTCTTTGTG
Found at i:37408486 original size:32 final size:32
Alignment explanation
Indices: 37408450--37408523 Score: 121
Period size: 32 Copynumber: 2.3 Consensus size: 32
37408440 TAAGATATTA
* * *
37408450 AATTGTAACTAAATGCATATATATAGGTGTTC
1 AATTGAAAATAAATGCATATATATAAGTGTTC
37408482 AATTGAAAATAAATGCATATATATAAGTGTTC
1 AATTGAAAATAAATGCATATATATAAGTGTTC
37408514 AATTGAAAAT
1 AATTGAAAAT
37408524 TTGGATGAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.35
Consensus pattern (32 bp):
AATTGAAAATAAATGCATATATATAAGTGTTC
Found at i:37409175 original size:14 final size:14
Alignment explanation
Indices: 37409152--37409182 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
37409142 GGTATTATAG
37409152 GAAACGTGTCAATC
1 GAAACGTGTCAATC
*
37409166 GAAACTTGTCAATC
1 GAAACGTGTCAATC
37409180 GAA
1 GAA
37409183 TCTACGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.23
Consensus pattern (14 bp):
GAAACGTGTCAATC
Found at i:37426260 original size:29 final size:29
Alignment explanation
Indices: 37426228--37426285 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
37426218 CCGTGACCCA
*
37426228 CTATCTATTAGAGATAGGAACCAGTCGGT
1 CTATCTATTAGAGATAAGAACCAGTCGGT
37426257 CTATCTATTAGAGATAAGAACCAGTCGGT
1 CTATCTATTAGAGATAAGAACCAGTCGGT
37426286 ATAGGTTGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (29 bp):
CTATCTATTAGAGATAAGAACCAGTCGGT
Found at i:37426720 original size:32 final size:32
Alignment explanation
Indices: 37426683--37426756 Score: 96
Period size: 32 Copynumber: 2.3 Consensus size: 32
37426673 AAAAGTAATT
* * *
37426683 GGTGTGAACAT-ATGGACTTGGATGGTCCCTTG
1 GGTGTGAACATCA-GGACTTGGACGGTCCATTA
*
37426715 GGTGTGAACATCAGGAGTTGGACGGTCCATTA
1 GGTGTGAACATCAGGACTTGGACGGTCCATTA
37426747 GGTGTGAACA
1 GGTGTGAACA
37426757 AAAGCAGCTG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
32 36 0.97
33 1 0.03
ACGTcount: A:0.23, C:0.15, G:0.35, T:0.27
Consensus pattern (32 bp):
GGTGTGAACATCAGGACTTGGACGGTCCATTA
Found at i:37433670 original size:7 final size:7
Alignment explanation
Indices: 37433656--37433688 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
37433646 CGCATGAATA
37433656 AAAT-AT
1 AAATAAT
37433662 AAATAAT
1 AAATAAT
37433669 AAATAAT
1 AAATAAT
37433676 AAATAAT
1 AAATAAT
37433683 -AATAAT
1 AAATAAT
37433689 GATACAAGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 10 0.38
7 16 0.62
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (7 bp):
AAATAAT
Found at i:37433671 original size:14 final size:15
Alignment explanation
Indices: 37433652--37433684 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
37433642 CATGCGCATG
37433652 AATAAAAT-ATAAAT
1 AATAAAATAATAAAT
37433666 AAT-AAATAATAAAT
1 AATAAAATAATAAAT
37433680 AATAA
1 AATAA
37433685 TAATGATACA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 4 0.24
14 12 0.71
15 1 0.06
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (15 bp):
AATAAAATAATAAAT
Found at i:37434166 original size:22 final size:21
Alignment explanation
Indices: 37434131--37434226 Score: 74
Period size: 19 Copynumber: 4.7 Consensus size: 21
37434121 AAAAGGTATC
* * *
37434131 TACAAATTAAATCTCTAATAT
1 TACAAATCATATCTCTAAGAT
37434152 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
37434175 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
37434194 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
37434213 TACATATCATATCT
1 TACAAATCATATCT
37434227 AAGATTGCAT
Statistics
Matches: 65, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
19 37 0.57
21 4 0.06
22 15 0.23
23 9 0.14
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.38
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:37434191 original size:19 final size:19
Alignment explanation
Indices: 37434167--37434239 Score: 137
Period size: 19 Copynumber: 3.8 Consensus size: 19
37434157 AATCATATCT
37434167 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
37434186 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
37434205 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
37434224 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
37434240 CTTGAAGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 52 1.00
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:37434789 original size:44 final size:44
Alignment explanation
Indices: 37434665--37435215 Score: 244
Period size: 44 Copynumber: 12.6 Consensus size: 44
37434655 TTCTAATCCA
* ** * *
37434665 CTCCACTACAACTTTAGGGAGATGGGATTTGTTTATTTAGTCTG
1 CTCCACTGCAACTTTAGGGAGATAAGACTTGTTTCTTTAGTCTG
* * *
37434709 CCCCACTGCAA-TTTCAGGGGGATAAGACTTGATTTCTTTAGTTTG
1 CTCCACTGCAACTTT-AGGGAGATAAGACTTG-TTTCTTTAGTCTG
* **
37434754 CTCCACTG-AACTTTAGGGAGATAAGACTCGCTTTCTTGGGTCTG
1 CTCCACTGCAACTTTAGGGAGATAAGACTTG-TTTCTTTAGTCTG
* ** * * *
37434798 CTCCACTGCAACTTCAGGGAGATAAGACCCGATGC--GA-TCTG
1 CTCCACTGCAACTTTAGGGAGATAAGACTTGTTTCTTTAGTCTG
* * * * * **
37434839 CT-CTCTGCAACTTCAGAGAGATAAGA-TCTGTGAT-TTTAATCCA
1 CTCCACTGCAACTTTAGGGAGATAAGACT-TGT-TTCTTTAGTCTG
* * * * *
37434882 CTCCACTGCAACTTTAGGGAGATAGGA-TTATTGGCTTTAATATG
1 CTCCACTGCAACTTTAGGGAGATAAGACTTGTT-TCTTTAGTCTG
* * * ** *
37434926 CTCTACTGCAACTTCAAGGAGATAAGA-TTCGCCATCTTCAGTCTG
1 CTCCACTGCAACTTTAGGGAGATAAGACTT-G-TTTCTTTAGTCTG
* * * *
37434971 C-CTCACTACAACTTCA-GGAGGATAAGGCTTGCTTAC-TTAGTCTG
1 CTC-CACTGCAACTTTAGGGA-GATAAGACTTG-TTTCTTTAGTCTG
* * *
37435015 CTCCACTGCAACTTTAGGGAGATAAGA-TTAGATGC--GA-TCTG
1 CTCCACTGCAACTTTAGGGAGATAAGACTT-GTTTCTTTAGTCTG
* * * * ** * * *
37435056 -TTCTCTACAACTTCATAGAGATAAGA-TCTGTGAT-TTTAATCCG
1 CTCCACTGCAACTTTAGGGAGATAAGACT-TGT-TTCTTTAGTCTG
** * * *
37435099 CTCCACTGTGACTTCAGGGAGATAAGA-TTATTGTCTTTAATCTG
1 CTCCACTGCAACTTTAGGGAGATAAGACTTGTT-TCTTTAGTCTG
* * * ** *
37435143 CTCCACTGCAACTTCAAGGAGATAAGACTCGCTTTCTTGGGTTTG
1 CTCCACTGCAACTTTAGGGAGATAAGACTTG-TTTCTTTAGTCTG
*
37435188 CTCCACTGCAACTTCAGGGAGATAAGAC
1 CTCCACTGCAACTTTAGGGAGATAAGAC
37435216 CCGATGCGAT
Statistics
Matches: 382, Mismatches: 95, Indels: 59
0.71 0.18 0.11
Matches are distributed among these distances:
40 45 0.12
41 11 0.03
42 4 0.01
43 19 0.05
44 191 0.50
45 108 0.28
46 4 0.01
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (44 bp):
CTCCACTGCAACTTTAGGGAGATAAGACTTGTTTCTTTAGTCTG
Found at i:37435106 original size:84 final size:83
Alignment explanation
Indices: 37435014--37435301 Score: 278
Period size: 84 Copynumber: 3.4 Consensus size: 83
37435004 TACTTAGTCT
*
37435014 GCTCCACTGCAACTTTAGGGAGATAAGATTAGATGCGATCTGTTCTCTACAACTTCATAGAGATA
1 GCTCCACTGCAACTTCAGGGAGATAAGATTAGATGCGATCTGTTCTCTACAACTTCA-AGAGATA
37435079 AGATCTGTGATTTTAATCC
65 AGATCTGTGATTTTAATCC
** * * * * *
37435098 GCTCCACTGTGACTTCAGGGAGATAAGATTA-TTGTCTTTAATCTGCTCCACTGCAACTTCAAGG
1 GCTCCACTGCAACTTCAGGGAGATAAGATTAGATG-C---GATCTG-TTCTCTACAACTTCAA-G
** **
37435162 AGATAAGA-CTCGCT--TTCTTGGGTTT
60 AGATAAGATCT-G-TGATT-TT-AATCC
*** *
37435187 GCTCCACTGCAACTTCAGGGAGATAAGACCCGATGCGATCTGCTCTCTACAACTTCAGAGAGATA
1 GCTCCACTGCAACTTCAGGGAGATAAGATTAGATGCGATCTGTTCTCTACAACTTCA-AGAGATA
37435252 AGATCTGTGATTTTAATCC
65 AGATCTGTGATTTTAATCC
* *
37435271 ACTCCACTGCAACTTCAGGGAGATAGGATTA
1 GCTCCACTGCAACTTCAGGGAGATAAGATTA
37435302 TTGGCTTTAA
Statistics
Matches: 157, Mismatches: 32, Indels: 30
0.72 0.15 0.14
Matches are distributed among these distances:
83 2 0.01
84 57 0.36
85 23 0.15
86 10 0.06
87 10 0.06
88 24 0.15
89 29 0.18
90 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (83 bp):
GCTCCACTGCAACTTCAGGGAGATAAGATTAGATGCGATCTGTTCTCTACAACTTCAAGAGATAA
GATCTGTGATTTTAATCC
Found at i:37435122 original size:173 final size:173
Alignment explanation
Indices: 37434930--37435347 Score: 500
Period size: 173 Copynumber: 2.4 Consensus size: 173
37434920 AATATGCTCT
* * *
37434930 ACTGCAACTTCAAGGAGATAAGATTCGCCATCTTCAGTCTGC-CTCACTACAACTTC-AGGAGGA
1 ACTGCAACTTCAGGGAGATAAGATT-ACCATCTTCAATCTGCTC-CACTACAACTTCAAGGA-GA
* * * ** *
37434993 TAAGGCTTGCTTACTT-AGTCTGCTCCACTGCAACTTTAGGGAGATAAGATTAGATGCGATCTGT
63 TAAGACTCGCTTACTTGAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACCAGATGCGATCTGC
* *
37435057 TCTCTACAACTTCATAGAGATAAGATCTGTGATTTTAATCCGCTCC
128 TCTCTACAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTCC
** *** * *
37435103 ACTGTGACTTCAGGGAGATAAGATTATTGTCTTTAATCTGCTCCACTGCAACTTCAAGGAGATAA
1 ACTGCAACTTCAGGGAGATAAGATTACCATCTTCAATCTGCTCCACTACAACTTCAAGGAGATAA
* * * *
37435168 GACTCGCTTTCTTGGGTTTGCTCCACTGCAACTTCAGGGAGATAAGACCCGATGCGATCTGCTCT
66 GACTCGCTTACTTGAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACCAGATGCGATCTGCTCT
37435233 CTACAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTCC
131 CTACAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTCC
* **** * * **
37435276 ACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCCACTATAACTTCTGGGAGATAA
1 ACTGCAACTTCAGGGAGATAAGATTACCATCTTCAATCTGCTCCACTACAACTTCAAGGAGATAA
*
37435341 GATTCGC
66 GACTCGC
37435348 CATATTCAAC
Statistics
Matches: 211, Mismatches: 31, Indels: 6
0.85 0.12 0.02
Matches are distributed among these distances:
172 36 0.17
173 175 0.83
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.30
Consensus pattern (173 bp):
ACTGCAACTTCAGGGAGATAAGATTACCATCTTCAATCTGCTCCACTACAACTTCAAGGAGATAA
GACTCGCTTACTTGAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACCAGATGCGATCTGCTCT
CTACAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTCC
Found at i:37435202 original size:217 final size:218
Alignment explanation
Indices: 37434658--37435215 Score: 676
Period size: 217 Copynumber: 2.6 Consensus size: 218
37434648 AGAGAAATTC
* * ** *** * * *
37434658 TAATCCACTCCACTACAACTTTAGGGAGATGGGATT-TGTTTATTTAGTCTGCCCCACTGCAATT
1 TAATCCACTCCACTGCAACTTCAGGGAGATAAGATTAT-TGGCTTTAATCTGCTCCACTGCAACT
* * * * * *
37434722 TCAGGGGGATAAGACTTGATTTCTTTAGTTTGCTCCACTG-AACTTTAGGGAGATAAGACTCGCT
65 TCAAGGAGATAAGACTCGCTTTCTTCAGTTTGCTCCACTGCAACTTCAGGGAGATAAGACTCGCT
* * * *
37434786 TTCTTGGGTCTGCTCCACTGCAACTTCAGGGAGATAAGACCCGATGCGATCTGCTCTCTGCAACT
130 TACTTGAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACCAGATGCGATCTGCTCTCTACAACT
37434851 TCAGAGAGATAAGATCTGTGATTT
195 TCAGAGAGATAAGATCTGTGATTT
* * * *
37434875 TAATCCACTCCACTGCAACTTTAGGGAGATAGGATTATTGGCTTTAATATGCTCTACTGCAACTT
1 TAATCCACTCCACTGCAACTTCAGGGAGATAAGATTATTGGCTTTAATCTGCTCCACTGCAACTT
* ** * * * *
37434940 CAAGGAGATAAGATTCGCCATCTTCAGTCTGC-CTCACTACAACTTCA-GGAGGATAAGGCTTGC
66 CAAGGAGATAAGACTCGCTTTCTTCAGTTTGCTC-CACTGCAACTTCAGGGA-GATAAGACTCGC
* ** *
37435003 TTACTT-AGTCTGCTCCACTGCAACTTTAGGGAGATAAGATTAGATGCGATCTGTTCTCTACAAC
129 TTACTTGAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACCAGATGCGATCTGCTCTCTACAAC
*
37435067 TTCATAGAGATAAGATCTGTGATTT
194 TTCAGAGAGATAAGATCTGTGATTT
* ** *
37435092 TAATCCGCTCCACTGTGACTTCAGGGAGATAAGATTATTGTCTTTAATCTGCTCCACTGCAACTT
1 TAATCCACTCCACTGCAACTTCAGGGAGATAAGATTATTGGCTTTAATCTGCTCCACTGCAACTT
**
37435157 CAAGGAGATAAGACTCGCTTTCTTGGGTTTGCTCCACTGCAACTTCAGGGAGATAAGAC
66 CAAGGAGATAAGACTCGCTTTCTTCAGTTTGCTCCACTGCAACTTCAGGGAGATAAGAC
37435216 CCGATGCGAT
Statistics
Matches: 287, Mismatches: 48, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
216 1 0.00
217 260 0.91
218 26 0.09
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (218 bp):
TAATCCACTCCACTGCAACTTCAGGGAGATAAGATTATTGGCTTTAATCTGCTCCACTGCAACTT
CAAGGAGATAAGACTCGCTTTCTTCAGTTTGCTCCACTGCAACTTCAGGGAGATAAGACTCGCTT
ACTTGAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACCAGATGCGATCTGCTCTCTACAACTT
CAGAGAGATAAGATCTGTGATTT
Found at i:37435286 original size:217 final size:217
Alignment explanation
Indices: 37434793--37435344 Score: 517
Period size: 217 Copynumber: 2.5 Consensus size: 217
37434783 GCTTTCTTGG
* * *** * * *
37434793 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACCCGATGCGATCTGCT-CTCTGCAACTTCAGAG
1 GTCTGCTCCACTACAACTTCAGAGAGATAAGATTAGATGCAATC-ACTCCACTGCAACTTCAGAG
* * * *
37434857 AGATAAGATCTGTGATTTTAATCCACTCCACTGCAACTTTAGGGAGATAGGATTATTGGCTTTAA
65 AGATAAGATCTGTGATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAAGATTATTGGCTTTAA
* *
37434922 TATGCTCTACTGCAACTTCAAGGAGATAAGATTCGCCATCTTCAGTCTGCCTCACTACAACTTCA
130 TATGCTCCACTGCAACTTCAAGGAGATAAGACTCGCCATCTTCAGTCTGCCTCACTACAACTTCA
* ** * *
37434987 GGAGGATAAGGCTTGCTTACTTA
195 GGAGGATAAGACCCGCATACTGA
* * * * ** * * * *
37435010 GTCTGCTCCACTGCAACTTTAGGGAGATAAGATTAGATGCGATCTGTTCTCTACAACTTCATAGA
1 GTCTGCTCCACTACAACTTCAGAGAGATAAGATTAGATGCAATCACTCCACTGCAACTTCAGAGA
* *
37435075 GATAAGATCTGTGATTTTAATCCGCTCCACTGTGACTTCAGGGAGATAAGATTATTGTCTTTAAT
66 GATAAGATCTGTGATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAAGATTATTGGCTTTAAT
* ** ** * *
37435140 CTGCTCCACTGCAACTTCAAGGAGATAAGACTCGCTTTCTTGGGTTTG-CTCCACTGCAACTTCA
131 ATGCTCCACTGCAACTTCAAGGAGATAAGACTCGCCATCTTCAGTCTGCCT-CACTACAACTTCA
*
37435204 GG-GAGATAAGACCCG-ATGC-GA
195 GGAG-GATAAGACCCGCATACTGA
* * **
37435225 -TCTGCT-CTCTACAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTCCACTGCAACTTCA
1 GTCTGCTCCACTACAACTTCAGAGAGATAAGAT-T-AGA-TGCAAT-CACTCCACTGCAACTTCA
* * * ** * * *
37435288 GGGAGATAGGAT-TATTGGCTTTAATCTGCTCCACTATAACTTCTGGGAGATAAGATT
62 GAGAGATAAGATCT-GTGATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAAGATT
37435345 CGCCATATTC
Statistics
Matches: 275, Mismatches: 52, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
213 21 0.08
214 7 0.03
215 3 0.01
216 10 0.04
217 234 0.85
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.30
Consensus pattern (217 bp):
GTCTGCTCCACTACAACTTCAGAGAGATAAGATTAGATGCAATCACTCCACTGCAACTTCAGAGA
GATAAGATCTGTGATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAAGATTATTGGCTTTAAT
ATGCTCCACTGCAACTTCAAGGAGATAAGACTCGCCATCTTCAGTCTGCCTCACTACAACTTCAG
GAGGATAAGACCCGCATACTGA
Found at i:37435288 original size:44 final size:44
Alignment explanation
Indices: 37434794--37435343 Score: 216
Period size: 44 Copynumber: 12.7 Consensus size: 44
37434784 CTTTCTTGGG
* ** ***
37434794 TCTGCTCCACTGCAACTTCAGGGAGATAAGA-C-CCGA-TGCGA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAA
*
37434835 TCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTGTGATTTTAA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAA
** * * * * **
37434878 TCCACTCCACTGCAACTTTAGGGAGATAGGAT-TATTGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCT-GTGATTTTAA
* * ** * *
37434922 TATGCTCTACTGCAACTTCA-AGGAGATAAGAT-TCGCCATCTTCAG
1 TCTGCTCCACTGCAACTTCAGA-GAGATAAGATCT-GTGAT-TTTAA
* * * *
37434967 TCTGC-CTCACTACAACTTCAG-GAGGATAAG-GCT-TGCTTACTTAG
1 TCTGCTC-CACTGCAACTTCAGAGA-GATAAGATCTGTGATT--TTAA
* * * ***
37435011 TCTGCTCCACTGCAACTTTAGGGAGATAAGAT-T-AGA-TGCGA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAA
* * * *
37435052 TCTG-TTCTCTACAACTTCATAGAGATAAGATCTGTGATTTTAA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAA
* ** * *
37435095 TCCGCTCCACTGTGACTTCAGGGAGATAAGAT-TATTG-TCTTTAA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCT-GTGAT-TTTAA
**
37435139 TCTGCTCCACTGCAACTTCA-AGGAGATAAGA-CTCGCT--TTCTTGGG
1 TCTGCTCCACTGCAACTTCAGA-GAGATAAGATCT-G-TGATT-TT-AA
* * ** ***
37435184 TTTGCTCCACTGCAACTTCAGGGAGATAAGA-C-CCGA-TGCGA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAA
* *
37435225 TCTGCT-CTCTACAACTTCAGAGAGATAAGATCTGTGATTTTAA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAA
** * * * **
37435268 TCCACTCCACTGCAACTTCAGGGAGATAGGAT-TATTGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCT-GTGATTTTAA
** * *
37435312 TCTGCTCCACTATAACTTCTGGGAGATAAGAT
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGAT
37435344 TCGCCATATT
Statistics
Matches: 368, Mismatches: 106, Indels: 67
0.68 0.20 0.12
Matches are distributed among these distances:
40 64 0.17
41 19 0.05
42 7 0.02
43 25 0.07
44 195 0.53
45 58 0.16
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.30
Consensus pattern (44 bp):
TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAA
Found at i:37435380 original size:44 final size:44
Alignment explanation
Indices: 37435332--37435427 Score: 113
Period size: 44 Copynumber: 2.2 Consensus size: 44
37435322 TATAACTTCT
* * * *
37435332 GGGAGATAAGA-TTCGCCATATTCAACCTATTCCATTGTTGACCA
1 GGGAGATAAGACTT-ACAATATTCAACCTATTCCACTGCTGACCA
* * *
37435376 GGGAGATAAGACTTACAATCTTCAACCTATTCCACTGCTGTCTA
1 GGGAGATAAGACTTACAATATTCAACCTATTCCACTGCTGACCA
37435420 GGGAGATA
1 GGGAGATA
37435428 GGGATGGGGT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
44 42 0.95
45 2 0.05
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (44 bp):
GGGAGATAAGACTTACAATATTCAACCTATTCCACTGCTGACCA
Found at i:37435561 original size:88 final size:88
Alignment explanation
Indices: 37435440--37435918 Score: 733
Period size: 88 Copynumber: 5.4 Consensus size: 88
37435430 GATGGGGTCA
* * * * * * * *
37435440 TCGATCTGCTTCGTTGTCGATGCAGGAAAGCAAGATCTGTTATTTTAAACCTGTTTCGCTGTAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAAC
*
37435505 CCAGGGAGGCAAGGCTGATGTCT
66 CCAGGGAGGCAAGGCTGGTGTCT
* * *
37435528 TCGATCTGTTTCGCTATCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAAC
* *
37435593 CTAGGGAGGCAAGGTTGGTGTCT
66 CCAGGGAGGCAAGGCTGGTGTCT
* *
37435616 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATATGCTATTTTTAACCTGCTCCGCTACAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAAC
*
37435681 CCAGAGAGGCAAGGCTGGTGTCT
66 CCAGGGAGGCAAGGCTGGTGTCT
* *
37435704 TCGATCTGCTTCGCTATCGGTGCAGGAAGGCAAGATCTGCAATTTTTAACCTGCTCCGCTGCAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAAC
37435769 CCAGGGAGGCAAGGCTGGTGTCT
66 CCAGGGAGGCAAGGCTGGTGTCT
* * *
37435792 TCGATCTACTTCGCTGTCGGTGCAGGAAGGCAAGATCTACTATTTTTAACCTACTCCGCTGCAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAAC
* *
37435857 CCAGGAAGGCAAGGCTAGTGTCT
66 CCAGGGAGGCAAGGCTGGTGTCT
*
37435880 TCGATCTGCTTTGCTGTCGGTGCAGGAAGGCAAGATCTG
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTG
37435919 TTATCTTCAC
Statistics
Matches: 356, Mismatches: 35, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
88 356 1.00
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.28
Consensus pattern (88 bp):
TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAAC
CCAGGGAGGCAAGGCTGGTGTCT
Found at i:37435823 original size:44 final size:44
Alignment explanation
Indices: 37435506--37435913 Score: 144
Period size: 44 Copynumber: 9.3 Consensus size: 44
37435496 CGCTGTAACC
* * * *
37435506 CAGGGAGGCAAGGCTGATGTCTTCGATCTGTTTCGCTATCGGTG
1 CAGGAAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTG
* * * * ** * * * ***
37435550 CAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCT-AC-AAC
1 CAGGAAGGCAAG-GCTGGTGTCTTCGATCTGCTTCGCTGTCGGTG
* *
37435593 CTAGGGAGGCAAGGTTGGTGTCTTCGATCTGCTTCGCTGTCGGTG
1 C-AGGAAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTG
** * * * ** * * * ****
37435638 CAGGAAGGCAAGATATGCTATTTTTAACCTGCTCCGCT-ACAACC
1 CAGGAAGGCAAG-GCTGGTGTCTTCGATCTGCTTCGCTGTCGGTG
*
37435682 CA-GAGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTATCGGTG
1 CAGGA-AGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTG
* *** * ** * * ****
37435726 CAGGAAGGCAAGATCTGCAATTTTTAACCTGCTCCGCTG-CAACC
1 CAGGAAGGCAAG-GCTGGTGTCTTCGATCTGCTTCGCTGTCGGTG
* *
37435770 CAGGGAGGCAAGGCTGGTGTCTTCGATCTACTTCGCTGTCGGTG
1 CAGGAAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTG
* ** * * ** * * * ****
37435814 CAGGAAGGCAAGATCTACTATTTTTAACCTACTCCGCTG-CAACC
1 CAGGAAGGCAAG-GCTGGTGTCTTCGATCTGCTTCGCTGTCGGTG
* *
37435858 CAGGAAGGCAAGGCTAGTGTCTTCGATCTGCTTTGCTGTCGGTG
1 CAGGAAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTG
37435902 CAGGAAGGCAAG
1 CAGGAAGGCAAG
37435914 ATCTGTTATC
Statistics
Matches: 238, Mismatches: 114, Indels: 24
0.63 0.30 0.06
Matches are distributed among these distances:
43 67 0.28
44 103 0.43
45 68 0.29
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.26
Consensus pattern (44 bp):
CAGGAAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTG
Found at i:37437145 original size:2 final size:2
Alignment explanation
Indices: 37437138--37437166 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
37437128 TTTCTTCTTT
37437138 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
37437167 TTTACTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Done.