Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53248092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1300000 characters in sequence are not A, C, G, or T
File 122 of 175
Found at i:38297642 original size:9 final size:9
Alignment explanation
Indices: 38297624--38297756 Score: 64
Period size: 9 Copynumber: 15.2 Consensus size: 9
38297614 CTTATATTTA
*
38297624 AACTTTCAT
1 AACTTACAT
38297633 AACTTACAT
1 AACTTACAT
*
38297642 AA-TAACAT
1 AACTTACAT
38297650 ATGGACTTACAT
1 A---ACTTACAT
*
38297662 TA--TACAT
1 AACTTACAT
* * *
38297669 AGCATACGT
1 AACTTACAT
38297678 AAC-TACAT
1 AACTTACAT
*
38297686 AA--TACAA
1 AACTTACAT
38297693 AACTTACAT
1 AACTTACAT
*
38297702 AAC-TAAAT
1 AACTTACAT
* *
38297710 ATCTTACAC
1 AACTTACAT
*
38297719 AACTTACAC
1 AACTTACAT
*
38297728 AACTTAAAT
1 AACTTACAT
* *
38297737 AATTTAAAT
1 AACTTACAT
38297746 AACTTACAT
1 AACTTACAT
38297755 AA
1 AA
38297757 TACATAATAT
Statistics
Matches: 94, Mismatches: 21, Indels: 18
0.71 0.16 0.14
Matches are distributed among these distances:
7 11 0.12
8 18 0.19
9 59 0.63
11 1 0.01
12 5 0.05
ACGTcount: A:0.47, C:0.19, G:0.03, T:0.31
Consensus pattern (9 bp):
AACTTACAT
Found at i:38297722 original size:26 final size:27
Alignment explanation
Indices: 38297688--38297756 Score: 81
Period size: 27 Copynumber: 2.6 Consensus size: 27
38297678 AACTACATAA
38297688 TACAAAACTTACATAAC-TAAAT-ATCT
1 TACAAAACTTACATAACTTAAATAAT-T
* *
38297714 TACACAACTTACACAACTTAAATAATT
1 TACAAAACTTACATAACTTAAATAATT
38297741 TA-AATAACTTACATAA
1 TACAA-AACTTACATAA
38297757 TACATAATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
26 16 0.44
27 18 0.50
28 2 0.06
ACGTcount: A:0.51, C:0.19, G:0.00, T:0.30
Consensus pattern (27 bp):
TACAAAACTTACATAACTTAAATAATT
Found at i:38297825 original size:31 final size:31
Alignment explanation
Indices: 38297769--38298193 Score: 320
Period size: 31 Copynumber: 13.7 Consensus size: 31
38297759 CATAATATGA
*
38297769 TACATAAATTACATTAA-T-ATGATACATAAAT
1 TACATAACTTA-ATTAATTAAT-ATACATAAAT
*
38297800 TACATAACTTAATTAATTAATATACATAAGT
1 TACATAACTTAATTAATTAATATACATAAAT
* *
38297831 TACATAACTTAGTTAATTAATATACATAAGT
1 TACATAACTTAATTAATTAATATACATAAAT
*
38297862 TACATAACTTAATTAATTAATATACAT-AGT
1 TACATAACTTAATTAATTAATATACATAAAT
38297892 TAC---A-TTAATTAATTAATATACATAAAT
1 TACATAACTTAATTAATTAATATACATAAAT
*
38297919 TAC---A-TTAA-T-A-T--GATACATAAAT
1 TACATAACTTAATTAATTAATATACATAAAT
*
38297941 TACATAACTTAATTAATTAATATACATAAGT
1 TACATAACTTAATTAATTAATATACATAAAT
38297972 TACATAACTTACATTAA-T-ATGATACATAAAT
1 TACATAACTTA-ATTAATTAAT-ATACATAAAT
* * *
38298003 TACAAAAAATTGCAATTAA-TATTATACATATAACT
1 TAC-ATAACTT--AATTAATTAATATACATA-AA-T
* *
38298038 TAC--AACTTACA-TAACTTACA-ACTTAAATAACT
1 TACATAACTTA-ATTAA-TTA-ATA--TACATAAAT
** *
38298070 TACATAACTTACATTTTTTTAATTATTCATAAAT
1 TACATAACTTA-A-TTAATTAA-TATACATAAAT
*
38298104 TACATAACTTAATTAGTTAATATACATAAAT
1 TACATAACTTAATTAATTAATATACATAAAT
38298135 TACATAACTTAATTAATTACTCAGTATTATACATAAAT
1 TACATAACTTAATTAA-T--T-A--A-TATACATAAAT
*
38298173 TACATAACTTAGTTAATTAAT
1 TACATAACTTAATTAATTAAT
38298194 GTTATACATA
Statistics
Matches: 329, Mismatches: 26, Indels: 78
0.76 0.06 0.18
Matches are distributed among these distances:
22 13 0.04
24 1 0.00
25 2 0.01
26 24 0.07
27 12 0.04
28 1 0.00
29 1 0.00
30 17 0.05
31 136 0.41
32 31 0.09
33 15 0.05
34 37 0.11
35 9 0.03
36 2 0.01
37 2 0.01
38 26 0.08
ACGTcount: A:0.47, C:0.11, G:0.03, T:0.39
Consensus pattern (31 bp):
TACATAACTTAATTAATTAATATACATAAAT
Found at i:38297888 original size:22 final size:22
Alignment explanation
Indices: 38297862--38297927 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 22
38297852 ATACATAAGT
38297862 TACATAACTTAATTAATTAATA
1 TACATAACTTAATTAATTAATA
38297884 TACATAGTTACATTAATTAATTAATA
1 TACATA---AC-TTAATTAATTAATA
*
38297910 TACATAAATTACATTAAT
1 TACATAACTTA-ATTAAT
38297928 ATGATACATA
Statistics
Matches: 38, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
22 9 0.24
23 7 0.18
25 2 0.05
26 20 0.53
ACGTcount: A:0.48, C:0.09, G:0.02, T:0.41
Consensus pattern (22 bp):
TACATAACTTAATTAATTAATA
Found at i:38297934 original size:22 final size:22
Alignment explanation
Indices: 38297909--38298006 Score: 91
Period size: 22 Copynumber: 4.6 Consensus size: 22
38297899 ATTAATTAAT
38297909 ATACATAAATTACATTAATATG
1 ATACATAAATTACATTAATATG
*
38297931 ATACATAAATTACA-TAA-CT-
1 ATACATAAATTACATTAATATG
* *
38297950 -TA-ATTAATTA-ATATACATAAG
1 ATACATAAATTACAT-TA-ATATG
* *
38297971 TTACATAACTTACATTAATATG
1 ATACATAAATTACATTAATATG
38297993 ATACATAAATTACA
1 ATACATAAATTACA
38298007 AAAAATTGCA
Statistics
Matches: 59, Mismatches: 9, Indels: 16
0.70 0.11 0.19
Matches are distributed among these distances:
16 1 0.02
17 7 0.12
18 4 0.07
19 1 0.02
20 1 0.02
21 3 0.05
22 32 0.54
23 8 0.14
24 2 0.03
ACGTcount: A:0.50, C:0.11, G:0.03, T:0.36
Consensus pattern (22 bp):
ATACATAAATTACATTAATATG
Found at i:38298053 original size:16 final size:16
Alignment explanation
Indices: 38298032--38298083 Score: 77
Period size: 16 Copynumber: 3.1 Consensus size: 16
38298022 TATTATACAT
38298032 ATAACTTACAACTTAC
1 ATAACTTACAACTTAC
*
38298048 ATAACTTACAACTTAA
1 ATAACTTACAACTTAC
38298064 ATAACTTACATAACTTAC
1 ATAACTTAC--AACTTAC
38298082 AT
1 AT
38298084 TTTTTTAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
16 24 0.75
18 8 0.25
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (16 bp):
ATAACTTACAACTTAC
Found at i:38298055 original size:9 final size:9
Alignment explanation
Indices: 38298032--38298337 Score: 76
Period size: 9 Copynumber: 36.3 Consensus size: 9
38298022 TATTATACAT
38298032 ATAACTTAC
1 ATAACTTAC
38298041 --AACTTAC
1 ATAACTTAC
38298048 ATAACTTAC
1 ATAACTTAC
*
38298057 --AACTTAA
1 ATAACTTAC
38298064 ATAACTTAC
1 ATAACTTAC
38298073 ATAACTTAC
1 ATAACTTAC
***
38298082 ATTTTTTTA-
1 A-TAACTTAC
*
38298091 ATTA-TT-C
1 ATAACTTAC
*
38298098 ATAAATTAC
1 ATAACTTAC
38298107 ATAACTTA-
1 ATAACTTAC
* *
38298115 ATTAGTTA-
1 ATAACTTAC
38298123 AT-A--TAC
1 ATAACTTAC
*
38298129 ATAAATTAC
1 ATAACTTAC
38298138 ATAACTTA-
1 ATAACTTAC
38298146 ATTAA-TTAC
1 A-TAACTTAC
*
38298155 -TCAGTATTATAC
1 AT-A--ACT-TAC
*
38298167 ATAAATTAC
1 ATAACTTAC
*
38298176 ATAACTTAG
1 ATAACTTAC
*
38298185 TTAA-TTA-
1 ATAACTTAC
**
38298192 AT-GTTATAC
1 ATAACT-TAC
38298201 ATAACTTAC
1 ATAACTTAC
38298210 --AACTTAC
1 ATAACTTAC
38298217 ATAACTTAC
1 ATAACTTAC
38298226 --AACTTAC
1 ATAACTTAC
38298233 ATAACTTAC
1 ATAACTTAC
***
38298242 AATTTTTTA-
1 -ATAACTTAC
*
38298251 ATTA-TT-C
1 ATAACTTAC
* *
38298258 GTAAATTAC
1 ATAACTTAC
38298267 ATAACTTAC
1 ATAACTTAC
* * *
38298276 TTAATTTTC
1 ATAACTTAC
*
38298285 ATAA--TAA
1 ATAACTTAC
38298292 ATAACTTAC
1 ATAACTTAC
38298301 --AACTTAC
1 ATAACTTAC
*
38298308 ATAACTTAT
1 ATAACTTAC
** *
38298317 ACGACATAC
1 ATAACTTAC
38298326 ATAACTTAC
1 ATAACTTAC
38298335 ATA
1 ATA
38298338 GCATAATTTG
Statistics
Matches: 219, Mismatches: 42, Indels: 72
0.66 0.13 0.22
Matches are distributed among these distances:
5 2 0.01
6 2 0.01
7 53 0.24
8 27 0.12
9 116 0.53
10 13 0.06
11 1 0.00
12 4 0.02
13 1 0.00
ACGTcount: A:0.43, C:0.16, G:0.02, T:0.39
Consensus pattern (9 bp):
ATAACTTAC
Found at i:38298103 original size:163 final size:165
Alignment explanation
Indices: 38297934--38298242 Score: 441
Period size: 163 Copynumber: 1.9 Consensus size: 165
38297924 TAATATGATA
*
38297934 CATAAATTACATAACTTAATTAATTAATATACATAAGTTACATAACTTACATTAA-TA-T-G-AT
1 CATAAATTACATAACTTAATTAATTAATATACATAAATTACATAACTTA-ATTAATTACTAGTAT
38297995 ACATAAATTACAAAAAATT-G-CAATTAATATTATACATATAACTTACAACTTACATAACTTACA
65 ACATAAATTAC-AAAAATTAGTCAATTAATATTATAC--ATAACTTACAACTTACATAACTTACA
38298058 ACTTAAATAACTTACATAACTTACATTTTTTTAATTATT
127 ACTTAAATAACTTACATAACTTACATTTTTTTAATTATT
*
38298097 CATAAATTACATAACTTAATTAGTTAATATACATAAATTACATAACTTAATTAATTACTCAGTAT
1 CATAAATTACATAACTTAATTAATTAATATACATAAATTACATAACTTAATTAATTACT-AG---
* * * *
38298162 TATACATAAATTACATAACTTAGTTAATTAATGTTATACATAACTTACAACTTACATAACTTACA
62 TATACATAAATTACAAAAATTAGTCAATTAATATTATACATAACTTACAACTTACATAACTTACA
*
38298227 ACTTACATAACTTACA
127 ACTTAAATAACTTACA
38298243 ATTTTTTAAT
Statistics
Matches: 129, Mismatches: 7, Indels: 14
0.86 0.05 0.09
Matches are distributed among these distances:
162 5 0.04
163 49 0.38
164 1 0.01
166 1 0.01
169 46 0.36
170 14 0.11
171 13 0.10
ACGTcount: A:0.46, C:0.14, G:0.02, T:0.38
Consensus pattern (165 bp):
CATAAATTACATAACTTAATTAATTAATATACATAAATTACATAACTTAATTAATTACTAGTATA
CATAAATTACAAAAATTAGTCAATTAATATTATACATAACTTACAACTTACATAACTTACAACTT
AAATAACTTACATAACTTACATTTTTTTAATTATT
Found at i:38298219 original size:16 final size:16
Alignment explanation
Indices: 38298198--38298243 Score: 92
Period size: 16 Copynumber: 2.9 Consensus size: 16
38298188 ATTAATGTTA
38298198 TACATAACTTACAACT
1 TACATAACTTACAACT
38298214 TACATAACTTACAACT
1 TACATAACTTACAACT
38298230 TACATAACTTACAA
1 TACATAACTTACAA
38298244 TTTTTTAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (16 bp):
TACATAACTTACAACT
Found at i:38298270 original size:91 final size:93
Alignment explanation
Indices: 38298168--38298404 Score: 247
Period size: 91 Copynumber: 2.6 Consensus size: 93
38298158 GTATTATACA
* * * * *
38298168 TAAATTACATAACTTAGTTAATTAAT-GTTATACATAACTTACAACTTACATAAC-T-TACAACT
1 TAAATTACATAACTTACTTAATT-ATCATAATAAATAACTTACAACTTACATAACTTATACAACA
38298230 TACATAACTTACAATTTTTTAATTATTCG
65 TACATAACTTACAATTTTTTAATTATTCG
* *
38298259 TAAATTACATAACTTACTTAATTTTCATAATAAATAACTTACAACTTACATAACTTATACGACAT
1 TAAATTACATAACTTACTTAATTATCATAATAAATAACTTACAACTTACATAACTTATACAACAT
**** *
38298324 ACATAACTTAC-ATAGCATAATT-TGAC-
66 ACATAACTTACAATTTTTTAATTAT-TCG
* * * **
38298350 T-AA-TACACAACTTACATAATTTTCATAATAAATAACTTACAAAATACATAACTTA
1 TAAATTACATAACTTACTTAATTATCATAATAAATAACTTACAACTTACATAACTTA
38298405 CGTAGCTTAG
Statistics
Matches: 126, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
89 48 0.38
90 3 0.02
91 49 0.39
92 9 0.07
93 17 0.13
ACGTcount: A:0.44, C:0.16, G:0.03, T:0.37
Consensus pattern (93 bp):
TAAATTACATAACTTACTTAATTATCATAATAAATAACTTACAACTTACATAACTTATACAACAT
ACATAACTTACAATTTTTTAATTATTCG
Found at i:38303942 original size:66 final size:66
Alignment explanation
Indices: 38303835--38303961 Score: 184
Period size: 66 Copynumber: 1.9 Consensus size: 66
38303825 AGCAAATTAC
* * *
38303835 ACAACTTAAAGCGGAGGCAACATCGAGAGAAGCTGATGTTCAAAG-AAGATATGAAGAACTCTAG
1 ACAACTTAAAGCGGAGGCAACAGCGAGAGAAGCTAAGGTTCAAAGAAAG-TATGAAGAACTCTAG
38303899 CT
65 CT
* * *
38303901 ACAACTTAAAGCGGATGCAGCAGCGAGAGAAGCTAAGGTTCAACGAAAGTATGAAGAACTC
1 ACAACTTAAAGCGGAGGCAACAGCGAGAGAAGCTAAGGTTCAAAGAAAGTATGAAGAACTC
38303962 CAGCAGCAGC
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
66 51 0.94
67 3 0.06
ACGTcount: A:0.41, C:0.17, G:0.25, T:0.17
Consensus pattern (66 bp):
ACAACTTAAAGCGGAGGCAACAGCGAGAGAAGCTAAGGTTCAAAGAAAGTATGAAGAACTCTAGC
T
Found at i:38303990 original size:66 final size:66
Alignment explanation
Indices: 38303835--38303999 Score: 163
Period size: 66 Copynumber: 2.5 Consensus size: 66
38303825 AGCAAATTAC
** * * * * * *
38303835 ACAACTTAAAGCGGAGGCAACATCGAGAGAAGCTGATGTTCAAAGAAGATATGAAGAACTCTAGC
1 ACAACTTAAAGCAAATGCAGCAGCGAGAGAAGCTAAGGTTCAAAGAAGATATGAAGAACTCCAGC
38303900 T
66 T
** *
38303901 ACAACTTAAAGCGGATGCAGCAGCGAGAGAAGCTAAGGTTCAACGAA-AGTATGAAGAACTCCAG
1 ACAACTTAAAGCAAATGCAGCAGCGAGAGAAGCTAAGGTTCAAAGAAGA-TATGAAGAACTCCAG
38303965 C-
65 CT
* * * *
38303966 AGCAGCTTAGAGCAAATGCGGCAGCAAGAGAAGC
1 A-CAACTTAAAGCAAATGCAGCAGCGAGAGAAGC
38304000 AGAGGCGGCA
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
65 2 0.02
66 82 0.98
ACGTcount: A:0.40, C:0.19, G:0.27, T:0.15
Consensus pattern (66 bp):
ACAACTTAAAGCAAATGCAGCAGCGAGAGAAGCTAAGGTTCAAAGAAGATATGAAGAACTCCAGC
T
Found at i:38304007 original size:21 final size:21
Alignment explanation
Indices: 38303983--38304087 Score: 84
Period size: 21 Copynumber: 5.0 Consensus size: 21
38303973 TAGAGCAAAT
*
38303983 GCGGCAGCAAGAGAAGCAGAG
1 GCGGCAGCGAGAGAAGCAGAG
* *
38304004 GCGGCAGCGAGAGAAGTACAG
1 GCGGCAGCGAGAGAAGCAGAG
** *
38304025 GCTACAGCGAGGGAAGCAGAG
1 GCGGCAGCGAGAGAAGCAGAG
*** * * *
38304046 GCTAAAGCGAGGGAAGTAAAG
1 GCGGCAGCGAGAGAAGCAGAG
* *
38304067 GCTGCAGCGAGGGAAGCAGAG
1 GCGGCAGCGAGAGAAGCAGAG
38304088 CAGCGTCAAA
Statistics
Matches: 69, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 69 1.00
ACGTcount: A:0.35, C:0.17, G:0.43, T:0.05
Consensus pattern (21 bp):
GCGGCAGCGAGAGAAGCAGAG
Found at i:38304041 original size:42 final size:42
Alignment explanation
Indices: 38303995--38304087 Score: 132
Period size: 42 Copynumber: 2.2 Consensus size: 42
38303985 GGCAGCAAGA
** *
38303995 GAAGCAGAGGCGGCAGCGAGAGAAGTACAGGCTACAGCGAGG
1 GAAGCAGAGGCGAAAGCGAGAGAAGTAAAGGCTACAGCGAGG
* * *
38304037 GAAGCAGAGGCTAAAGCGAGGGAAGTAAAGGCTGCAGCGAGG
1 GAAGCAGAGGCGAAAGCGAGAGAAGTAAAGGCTACAGCGAGG
38304079 GAAGCAGAG
1 GAAGCAGAG
38304088 CAGCGTCAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.35, C:0.16, G:0.43, T:0.05
Consensus pattern (42 bp):
GAAGCAGAGGCGAAAGCGAGAGAAGTAAAGGCTACAGCGAGG
Found at i:38304270 original size:10 final size:9
Alignment explanation
Indices: 38304251--38304280 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
38304241 TAATACGAAT
38304251 TTTATTATA
1 TTTATTATA
38304260 TTTATTGATA
1 TTTATT-ATA
38304270 TTTATTATA
1 TTTATTATA
38304279 TT
1 TT
38304281 ATTTGTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (9 bp):
TTTATTATA
Found at i:38304485 original size:44 final size:43
Alignment explanation
Indices: 38304435--38304553 Score: 136
Period size: 43 Copynumber: 2.7 Consensus size: 43
38304425 TAAAGGTGTT
38304435 GGTCTTTAGCGGCGTTTTTGGTAAAAAGCGCCGCTATAGATCAG
1 GGTCTTTAGCGGCGTTTTT-GTAAAAAGCGCCGCTATAGATCAG
* * ** *
38304479 GGTCTTTAGTGGCGTTTGTG-ACCGAAGCGCCGCTATAGATCAT
1 GGTCTTTAGCGGCGTTTTTGTA-AAAAGCGCCGCTATAGATCAG
38304522 GGTCTATT-GCGGCGTTTTTAGT-AAAAGCGCCG
1 GGTCT-TTAGCGGCGTTTTT-GTAAAAAGCGCCG
38304554 ATAAAGACCC
Statistics
Matches: 62, Mismatches: 9, Indels: 9
0.77 0.11 0.11
Matches are distributed among these distances:
42 1 0.02
43 41 0.66
44 20 0.32
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.30
Consensus pattern (43 bp):
GGTCTTTAGCGGCGTTTTTGTAAAAAGCGCCGCTATAGATCAG
Found at i:38304571 original size:43 final size:43
Alignment explanation
Indices: 38304524--38304816 Score: 354
Period size: 43 Copynumber: 6.8 Consensus size: 43
38304514 TAGATCATGG
* * * *
38304524 TCTATTGCGGCGTTTTTAGTAAAAGCGCCGA-TAAAGACCCTGA
1 TCTATAGCGGCGCTTTTAGCAAAAACGCC-ACTAAAGACCCTGA
* ** *
38304567 TCTATAGCGGTGCTTTGCGTAAAAACGCCACTAAAGACCCTGA
1 TCTATAGCGGCGCTTTTAGCAAAAACGCCACTAAAGACCCTGA
* * *
38304610 TCTATAGCGGCACTTTTACCAAAAACGCCGCTAAAGACCCTGA
1 TCTATAGCGGCGCTTTTAGCAAAAACGCCACTAAAGACCCTGA
*** * *
38304653 TCTATAGCGGCGCTTAGCGCAAAAATGCCACTAAAGACCTTGA
1 TCTATAGCGGCGCTTTTAGCAAAAACGCCACTAAAGACCCTGA
* *
38304696 TCTATAGCGGCGCTTTTACCAAAAACGCCGCTAAAGACCCTGA
1 TCTATAGCGGCGCTTTTAGCAAAAACGCCACTAAAGACCCTGA
*** *
38304739 TCTATAGCGGCGCTTAGCGCAAAAACGCCACTAAAGACCTTGA
1 TCTATAGCGGCGCTTTTAGCAAAAACGCCACTAAAGACCCTGA
* *
38304782 TCTATAGCGGCGCTTTTACCAAAAACGCCGCTAAA
1 TCTATAGCGGCGCTTTTAGCAAAAACGCCACTAAA
38304817 TGTATTAGTC
Statistics
Matches: 210, Mismatches: 39, Indels: 2
0.84 0.16 0.01
Matches are distributed among these distances:
42 1 0.00
43 209 1.00
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (43 bp):
TCTATAGCGGCGCTTTTAGCAAAAACGCCACTAAAGACCCTGA
Found at i:38304620 original size:86 final size:86
Alignment explanation
Indices: 38304524--38304816 Score: 478
Period size: 86 Copynumber: 3.4 Consensus size: 86
38304514 TAGATCATGG
* * ** * * * * *
38304524 TCTATTGCGGCGTTTTTAGTAAAAGCGCCGATAAAGACCCTGATCTATAGCGGTGCTTTGCGTAA
1 TCTATAGCGGCGCTTTTACCAAAAACGCCGCTAAAGACCCTGATCTATAGCGGCGCTTAGCGCAA
*
38304589 AAACGCCACTAAAGACCCTGA
66 AAACGCCACTAAAGACCTTGA
*
38304610 TCTATAGCGGCACTTTTACCAAAAACGCCGCTAAAGACCCTGATCTATAGCGGCGCTTAGCGCAA
1 TCTATAGCGGCGCTTTTACCAAAAACGCCGCTAAAGACCCTGATCTATAGCGGCGCTTAGCGCAA
*
38304675 AAATGCCACTAAAGACCTTGA
66 AAACGCCACTAAAGACCTTGA
38304696 TCTATAGCGGCGCTTTTACCAAAAACGCCGCTAAAGACCCTGATCTATAGCGGCGCTTAGCGCAA
1 TCTATAGCGGCGCTTTTACCAAAAACGCCGCTAAAGACCCTGATCTATAGCGGCGCTTAGCGCAA
38304761 AAACGCCACTAAAGACCTTGA
66 AAACGCCACTAAAGACCTTGA
38304782 TCTATAGCGGCGCTTTTACCAAAAACGCCGCTAAA
1 TCTATAGCGGCGCTTTTACCAAAAACGCCGCTAAA
38304817 TGTATTAGTC
Statistics
Matches: 193, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
86 193 1.00
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (86 bp):
TCTATAGCGGCGCTTTTACCAAAAACGCCGCTAAAGACCCTGATCTATAGCGGCGCTTAGCGCAA
AAACGCCACTAAAGACCTTGA
Found at i:38305006 original size:21 final size:21
Alignment explanation
Indices: 38304982--38305025 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
38304972 TTCTGGGGCG
* *
38304982 CTAAAAAGCGCCGCTAAAGGC
1 CTAAAAAACGCCGCTAAAAGC
38305003 CTAAAAAACGCCGCTAAAAGC
1 CTAAAAAACGCCGCTAAAAGC
38305024 CT
1 CT
38305026 GTTTTGGTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.41, C:0.30, G:0.18, T:0.11
Consensus pattern (21 bp):
CTAAAAAACGCCGCTAAAAGC
Found at i:38306076 original size:31 final size:29
Alignment explanation
Indices: 38305974--38306053 Score: 160
Period size: 29 Copynumber: 2.8 Consensus size: 29
38305964 ACAAAACGAT
38305974 AACATAAGTGACTAAAATGTAACATTTTA
1 AACATAAGTGACTAAAATGTAACATTTTA
38306003 AACATAAGTGACTAAAATGTAACATTTTA
1 AACATAAGTGACTAAAATGTAACATTTTA
38306032 AACATAAGTGACTAAAATGTAA
1 AACATAAGTGACTAAAATGTAA
38306054 TTTGAGGTAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.50, C:0.10, G:0.11, T:0.29
Consensus pattern (29 bp):
AACATAAGTGACTAAAATGTAACATTTTA
Found at i:38306251 original size:16 final size:17
Alignment explanation
Indices: 38306226--38306260 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
38306216 ATATAACATT
*
38306226 ATATATTCAAATTATTA
1 ATATATTCAAAATATTA
38306243 ATATA-TCAAAATATTA
1 ATATATTCAAAATATTA
38306259 AT
1 AT
38306261 GATGAGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (17 bp):
ATATATTCAAAATATTA
Found at i:38316290 original size:24 final size:24
Alignment explanation
Indices: 38316263--38316309 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
38316253 TTTAGAGAAT
38316263 TTTGTGTTTACGTTTTGAGGGTTC
1 TTTGTGTTTACGTTTTGAGGGTTC
* * *
38316287 TTTGTTTTTAGGTTTTTAGGGTT
1 TTTGTGTTTACGTTTTGAGGGTT
38316310 TAGTTTTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.09, C:0.04, G:0.28, T:0.60
Consensus pattern (24 bp):
TTTGTGTTTACGTTTTGAGGGTTC
Found at i:38317500 original size:32 final size:31
Alignment explanation
Indices: 38317455--38317550 Score: 174
Period size: 31 Copynumber: 3.1 Consensus size: 31
38317445 CTTAGATAAT
38317455 TTTAAAGAGTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTATTAGGATTCAATTACTC
38317486 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
1 TTTAAAGAG-TTTTATTAGGATTCAATTACTC
*
38317518 TTGAAAGAGTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTATTAGGATTCAATTACTC
38317549 TT
1 TT
38317551 GTAATTTGCC
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
31 33 0.52
32 30 0.48
ACGTcount: A:0.31, C:0.09, G:0.14, T:0.46
Consensus pattern (31 bp):
TTTAAAGAGTTTTATTAGGATTCAATTACTC
Found at i:38318207 original size:20 final size:22
Alignment explanation
Indices: 38318160--38318207 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 22
38318150 AAAAGCGCAA
*
38318160 AAAAAAAGAGAGAGTAAAAAGC
1 AAAAAAAGAGAGAGCAAAAAGC
**
38318182 GCAAAAA-A-AGAGCAAAAAGC
1 AAAAAAAGAGAGAGCAAAAAGC
38318202 AAAAAA
1 AAAAAA
38318208 GCGCAAAAAA
Statistics
Matches: 21, Mismatches: 5, Indels: 2
0.75 0.18 0.07
Matches are distributed among these distances:
20 15 0.71
21 1 0.05
22 5 0.24
ACGTcount: A:0.71, C:0.08, G:0.19, T:0.02
Consensus pattern (22 bp):
AAAAAAAGAGAGAGCAAAAAGC
Found at i:38318223 original size:56 final size:56
Alignment explanation
Indices: 38318102--38318220 Score: 163
Period size: 56 Copynumber: 2.1 Consensus size: 56
38318092 AAATAAAAGC
38318102 AAAAAAAAGTAAAAAGTAAAAAGCGCAAAAAAAAACAAAAAAAGAAAAAAAAGCGCA
1 AAAAAAAAGTAAAAAGTAAAAAGCGCAAAAAAAAAC-AAAAAAGAAAAAAAAGCGCA
* * * *
38318159 AAAAAAAAG-AGAGAGTAAAAAGCGCAAAAAAAGAGC-AAAAAG-CAAAAAAGCGCA
1 AAAAAAAAGTAAAAAGTAAAAAGCGCAAAAAAA-AACAAAAAAGAAAAAAAAGCGCA
38318213 AAAAAAAA
1 AAAAAAAA
38318221 AAGTTGCCTA
Statistics
Matches: 57, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
54 19 0.33
55 6 0.11
56 21 0.37
57 11 0.19
ACGTcount: A:0.73, C:0.09, G:0.15, T:0.03
Consensus pattern (56 bp):
AAAAAAAAGTAAAAAGTAAAAAGCGCAAAAAAAAACAAAAAAGAAAAAAAAGCGCA
Found at i:38321300 original size:31 final size:32
Alignment explanation
Indices: 38321255--38321317 Score: 119
Period size: 31 Copynumber: 2.0 Consensus size: 32
38321245 AGATAATTTT
38321255 AAAGAGTTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTTATTAGGATTCAATTACTCTTG
38321287 AAAGAG-TTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTTATTAGGATTCAATTACTCTTG
38321318 TAATTTTCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 25 0.81
32 6 0.19
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.43
Consensus pattern (32 bp):
AAAGAGTTTTTATTAGGATTCAATTACTCTTG
Found at i:38325813 original size:128 final size:128
Alignment explanation
Indices: 38325570--38325864 Score: 493
Period size: 128 Copynumber: 2.3 Consensus size: 128
38325560 GGAAACTAGT
* *
38325570 GCTTTAATCTACTCCACTGCAACTTTCAGGGAGATAAGACTAAATACGATTTGCTCTCTGCAACT
1 GCTTTAATCTGCTCCACTGCAAC-TTCAGGGAGATAAGACTAAATACGATCTGCTCTCTGCAACT
* *
38325635 TCAAAGAGATAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTTAGGAAGATAGGATTATCG
65 TCAAAGAGATAAGATCCAAGGTTTTAATCCACTCCACTACAACTTCAGGAAGATAGGATTATCG
38325699 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTAAATACGATCTGCTCT-TGCAACTT
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTAAATACGATCTGCTCTCTGCAACTT
* *
38325763 TAGAGAGATAAGATCCAAGGTTTTAATCCACTCCACTTACAACTTCAGGAAGATAGGATTATCG
66 CAAAGAGATAAGATCCAAGGTTTTAATCCACTCCAC-TACAACTTCAGGAAGATAGGATTATCG
* *
38325827 GCTTTAATCTGATCCACTACAACTTCAGGGAGATAAGA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
38325865 TTTGCCATCT
Statistics
Matches: 157, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
127 42 0.27
128 93 0.59
129 22 0.14
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.28
Consensus pattern (128 bp):
GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTAAATACGATCTGCTCTCTGCAACTT
CAAAGAGATAAGATCCAAGGTTTTAATCCACTCCACTACAACTTCAGGAAGATAGGATTATCG
Found at i:38326037 original size:172 final size:173
Alignment explanation
Indices: 38325657--38326083 Score: 541
Period size: 172 Copynumber: 2.5 Consensus size: 173
38325647 GATCCAAGGT
* * * * *
38325657 TTTAATCCACTCCACTGCAACTTTAGGAAGATAGGATTATCGGC-T-TTAATC-TG-CTCCACTG
1 TTTAATCTACTCCACTGCAACTTTAGGGAGATAAGATT-T-GCCATCTTAAGCTTGCCT-CACTG
** *
38325718 CAACTTCAGG-GAGATAAGACTAAATACGATCTGCTCTTGCAACTTTAGAGAGATAAGATCCAAG
63 CAACTTCAGGAG-GATAAGACTAAATACGATCTGCTCTTGCAACTGCAGAGAGATAAGATCCAAA
*
38325782 GTTTTAATCCACTCCACTTACAACTTCAGGAAGATAGGATTATCGGC
127 GTTTTAATCCACTCCACTTACAACTTCAGGAAGATAGGATTACCGGC
* * *
38325829 TTTAATCTGA-TCCACTACAACTTCAGGGAGATAAGATTTGCCATCTTCAGCTTGCCTCACTGCA
1 TTTAATCT-ACTCCACTGCAACTTTAGGGAGATAAGATTTGCCATCTTAAGCTTGCCTCACTGCA
* * *
38325893 ACTTCAGGAGGATAAGACTAGATGCGATCTGCTCTCTGCAACTGCAGAGAGATAAGATCTAAAGT
65 ACTTCAGGAGGATAAGACTAAATACGATCTGCTCT-TGCAACTGCAGAGAGATAAGATCCAAAGT
* * *
38325958 TTTAATCCGCT-CAC-TGCAATTTCAGCG-AGATAGGATTACCGGC
129 TTTAATCCACTCCACTTACAACTTCAG-GAAGATAGGATTACCGGC
*
38326001 TTTAATCTACTCCACTGCAACTTTAGGGAGATAAGATTTGCCATCTTTAG-TCTGCCTCACTGCA
1 TTTAATCTACTCCACTGCAACTTTAGGGAGATAAGATTTGCCATCTTAAGCT-TGCCTCACTGCA
38326065 ACTTCAGGAGGATAAGACT
65 ACTTCAGGAGGATAAGACT
38326084 TGCCTACTTA
Statistics
Matches: 224, Mismatches: 21, Indels: 20
0.85 0.08 0.08
Matches are distributed among these distances:
170 2 0.01
171 4 0.02
172 135 0.60
173 45 0.20
174 38 0.17
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.29
Consensus pattern (173 bp):
TTTAATCTACTCCACTGCAACTTTAGGGAGATAAGATTTGCCATCTTAAGCTTGCCTCACTGCAA
CTTCAGGAGGATAAGACTAAATACGATCTGCTCTTGCAACTGCAGAGAGATAAGATCCAAAGTTT
TAATCCACTCCACTTACAACTTCAGGAAGATAGGATTACCGGC
Found at i:38326064 original size:45 final size:44
Alignment explanation
Indices: 38326010--38326127 Score: 161
Period size: 44 Copynumber: 2.7 Consensus size: 44
38326000 CTTTAATCTA
* *
38326010 CTCCACTGCAACTTTAGGGAGATAAGATTTGCC-ATCTTTAGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGCCTA-C-TTAGTCTG
38326055 C-CTCACTGCAACTTCA-GGAGGATAAGACTTGCCTACTTAGTCTG
1 CTC-CACTGCAACTTCAGGGA-GATAAGACTTGCCTACTTAGTCTG
38326099 CTCCACTGCAACTTCAGGGAGATAAGACT
1 CTCCACTGCAACTTCAGGGAGATAAGACT
38326128 CGATCTGTTA
Statistics
Matches: 66, Mismatches: 2, Indels: 11
0.84 0.03 0.14
Matches are distributed among these distances:
44 35 0.53
45 30 0.45
46 1 0.02
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.28
Consensus pattern (44 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTTGCCTACTTAGTCTG
Found at i:38326103 original size:89 final size:88
Alignment explanation
Indices: 38325833--38326125 Score: 280
Period size: 89 Copynumber: 3.4 Consensus size: 88
38325823 ATCGGCTTTA
* * *
38325833 ATCTGATCCACTACAACTTCAGGGAGATAAGATTTGCCATCTTCAG-CTTGCCTCACTGCAACTT
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTTAGTC-TGCCTCACTGCAACTT
* * *
38325897 CAGGAGGATAAGACTAG-ATGC-G
65 CAGGAGGATAAGACTTGCCTGCTT
* * * * ** * * *
38325919 ATCTGCT-CTCTGCAACTGCAGAGAGATAAGATCT-AAAGT-TTTAATCCG-CTCACTGCAATTT
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCA-TCTTTAGTCTGCCTCACTGCAACTT
* * *
38325980 CAGCGA-GATAGGA-TTACCGGCTTT
65 CAG-GAGGATAAGACTTGCCTGC-TT
* *
38326004 AATCTACTCCACTGCAACTTTAGGGAGATAAGATTTGCCATCTTTAGTCTGCCTCACTGCAACTT
1 -ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTTAGTCTGCCTCACTGCAACTT
*
38326069 CAGGAGGATAAGACTTGCCTACTT
65 CAGGAGGATAAGACTTGCCTGCTT
38326093 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGA
1 A-TCTGCTCCACTGCAACTTCAGGGAGATAAGA
38326126 CTCGATCTGT
Statistics
Matches: 158, Mismatches: 35, Indels: 25
0.72 0.16 0.11
Matches are distributed among these distances:
82 1 0.01
83 23 0.15
84 7 0.04
85 24 0.15
86 12 0.08
87 23 0.15
88 11 0.07
89 52 0.33
90 5 0.03
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (88 bp):
ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTTAGTCTGCCTCACTGCAACTTC
AGGAGGATAAGACTTGCCTGCTT
Found at i:38326110 original size:44 final size:45
Alignment explanation
Indices: 38325828--38326127 Score: 177
Period size: 45 Copynumber: 6.9 Consensus size: 45
38325818 GGATTATCGG
* * * *
38325828 CTTTAATCTGATCCACTACAACTTCAGGGAGATAAGATTTGCCAT
1 CTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCAT
* *
38325873 CTTCAG-CTTGC-CTCACTGCAACTTCA-GGAGGATAAGACTAG--AT
1 CTTTAGTC-TGCTC-CACTGCAACTTCAGGGA-GATAAGACTTGCCAT
* * * * **
38325916 GC--GA-TCTGCT-CTCTGCAACTGCAGAGAGATAAGA-TCT-AAAGT
1 -CTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACT-TGCCA-T
* * * * * * **
38325958 -TTTAATCCGCT-CACTGCAATTTCAGCGAGATAGGA-TTACCGG
1 CTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCAT
* * * *
38326000 CTTTAATCTACTCCACTGCAACTTTAGGGAGATAAGATTTGCCAT
1 CTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCAT
38326045 CTTTAGTCTGC-CTCACTGCAACTTCA-GGAGGATAAGACTTGCC-T
1 CTTTAGTCTGCTC-CACTGCAACTTCAGGGA-GATAAGACTTGCCAT
38326089 AC-TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACT
1 -CTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACT
38326128 CGATCTGTTA
Statistics
Matches: 197, Mismatches: 35, Indels: 47
0.71 0.13 0.17
Matches are distributed among these distances:
39 1 0.01
40 18 0.09
41 6 0.03
42 5 0.03
43 36 0.18
44 62 0.31
45 69 0.35
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (45 bp):
CTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCAT
Found at i:38334161 original size:24 final size:24
Alignment explanation
Indices: 38334132--38334177 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
38334122 ATCATCTTTT
* *
38334132 GCTGCTCATTCATTTGCTTTTGAA
1 GCTGCTCATGCATTTCCTTTTGAA
*
38334156 GCTGCTCCTGCATTTCCTTTTG
1 GCTGCTCATGCATTTCCTTTTG
38334178 GGATTGTTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.11, C:0.26, G:0.17, T:0.46
Consensus pattern (24 bp):
GCTGCTCATGCATTTCCTTTTGAA
Found at i:38349159 original size:20 final size:21
Alignment explanation
Indices: 38349134--38349178 Score: 74
Period size: 20 Copynumber: 2.2 Consensus size: 21
38349124 AATATTATAT
*
38349134 TAATTATATATGTTAAAT-AA
1 TAATTATATATATTAAATCAA
38349154 TAATTATATATATTAAATCAA
1 TAATTATATATATTAAATCAA
38349175 TAAT
1 TAAT
38349179 CTAATAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 17 0.74
21 6 0.26
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (21 bp):
TAATTATATATATTAAATCAA
Found at i:38355757 original size:25 final size:25
Alignment explanation
Indices: 38355701--38355795 Score: 79
Period size: 25 Copynumber: 3.8 Consensus size: 25
38355691 CATACTGCCC
* *
38355701 TACAGCTCGTACGAGCTTACCAATT
1 TACAGCTCGTATGAGCATACCAATT
* *
38355726 CT-TAGCTCGTATGAGCTTA-CAGATT
1 -TACAGCTCGTATGAGCATACCA-ATT
* *
38355751 TACAGCTCG-AGAGAGCATATCAATT
1 TACAGCTCGTA-TGAGCATACCAATT
*
38355776 CACAGCTCGTATGAGCATAC
1 TACAGCTCGTATGAGCATAC
38355796 ATGTAAAGAA
Statistics
Matches: 56, Mismatches: 8, Indels: 11
0.75 0.11 0.15
Matches are distributed among these distances:
24 4 0.07
25 48 0.86
26 4 0.07
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.27
Consensus pattern (25 bp):
TACAGCTCGTATGAGCATACCAATT
Found at i:38363154 original size:17 final size:17
Alignment explanation
Indices: 38363132--38363165 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
38363122 CACTAACATG
38363132 AAAATGTAATGACAATA
1 AAAATGTAATGACAATA
*
38363149 AAAATGTAATGGCAATA
1 AAAATGTAATGACAATA
38363166 TATACTTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.06, G:0.15, T:0.24
Consensus pattern (17 bp):
AAAATGTAATGACAATA
Found at i:38363616 original size:21 final size:21
Alignment explanation
Indices: 38363592--38363645 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
38363582 TTCTCATTTT
* *
38363592 CAACTACTTCTTCTTCTTCAC
1 CAACAACTTCTTCTTCTACAC
*
38363613 CAACAACTTCCTCTTCTACAC
1 CAACAACTTCTTCTTCTACAC
38363634 CAACAACTTCTT
1 CAACAACTTCTT
38363646 TCTCAACAGC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.26, C:0.39, G:0.00, T:0.35
Consensus pattern (21 bp):
CAACAACTTCTTCTTCTACAC
Found at i:38364390 original size:24 final size:24
Alignment explanation
Indices: 38364358--38364405 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
38364348 GATGATAGAA
38364358 TGTATCATACACATTCTGTCGAGG
1 TGTATCATACACATTCTGTCGAGG
38364382 TGTATCATACACATTCTGTCGAGG
1 TGTATCATACACATTCTGTCGAGG
38364406 GTGACTATGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (24 bp):
TGTATCATACACATTCTGTCGAGG
Found at i:38370772 original size:28 final size:28
Alignment explanation
Indices: 38370741--38370799 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
38370731 ATAATCAACC
38370741 AACCAAAATATCCATAGTTCCATACATT
1 AACCAAAATATCCATAGTTCCATACATT
38370769 AACCAAAATATCCATAGTTCCATACATT
1 AACCAAAATATCCATAGTTCCATACATT
38370797 AAC
1 AAC
38370800 ATATTTAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.44, C:0.25, G:0.03, T:0.27
Consensus pattern (28 bp):
AACCAAAATATCCATAGTTCCATACATT
Found at i:38385936 original size:9 final size:9
Alignment explanation
Indices: 38385922--38385946 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
38385912 CCTTGAGACA
38385922 AAAAAAATC
1 AAAAAAATC
38385931 AAAAAAATC
1 AAAAAAATC
38385940 AAAAAAA
1 AAAAAAA
38385947 AGAGAAGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.84, C:0.08, G:0.00, T:0.08
Consensus pattern (9 bp):
AAAAAAATC
Found at i:38386900 original size:24 final size:24
Alignment explanation
Indices: 38386868--38386919 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
38386858 CAAAAGTACT
38386868 GTGGATTGAACCTTGAAGATTACA
1 GTGGATTGAACCTTGAAGATTACA
*
38386892 GTGGATTGAACCTTGAAGATTACT
1 GTGGATTGAACCTTGAAGATTACA
38386916 GTGG
1 GTGG
38386920 GGACAATCTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.31
Consensus pattern (24 bp):
GTGGATTGAACCTTGAAGATTACA
Found at i:38387549 original size:178 final size:177
Alignment explanation
Indices: 38387243--38387628 Score: 469
Period size: 178 Copynumber: 2.2 Consensus size: 177
38387233 TGAAGAAAAC
* * ** *
38387243 AAGTCTTATCCCCCTGAAGTTGCAGTGGGGCAAACTGAAGATGGCAAATCTTATCTCCCTGAAGT
1 AAGTCTTATCTCCCTGAAGTTG-AGTGGAGCAAACTGAAGAAAGCAAATCTTATCCCCCTGAAGT
* * * * * *
38387308 TGTAGTGGAGCTAATTAAAGCCAATAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC
65 TGCAGTGGAGCTAATGAAAGCCAATAATCCTATCTCCCTAAAGTTGCAATGGAGCAAATTAAAGA
* * * *
38387373 CAATAATCCTATCTTCTTGAAGTTGCAGTGGAGCGGATTAAAGTTA-A
130 CAAAAATCCTATCTCCTTGAAATTGCAGTGGAGCAGATTAAAGTTACA
* *
38387420 AAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGAAAGCAAGTCTTATCCCCCTGAAGT
1 AAGTCTTATCTCCCTGAAGTTG-AGTGGAGCAAACTGAAGAAAGCAAATCTTATCCCCCTGAAGT
* *
38387485 TGCAGTAGG-GC-AGACTGAAGATGGC-A-AATCTTATCTCCCTAAAGTTGCAATGGAGCAAATT
65 TGCAGT-GGAGCTA-A-TGAA-A-GCCAATAATCCTATCTCCCTAAAGTTGCAATGGAGCAAATT
*
38387546 AAAGACAAAAATCCTATCTCCTTGAAATTGTAGTGGAGCAGATTAAAGTTACA
125 AAAGACAAAAATCCTATCTCCTTGAAATTGCAGTGGAGCAGATTAAAGTTACA
*
38387599 AA-TCTTATCTCCTTGAAGTTGATGTGGAGC
1 AAGTCTTATCTCCCTGAAGTTGA-GTGGAGC
38387629 GGATTAAAGT
Statistics
Matches: 180, Mismatches: 22, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
176 1 0.01
177 66 0.37
178 106 0.59
179 5 0.03
180 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (177 bp):
AAGTCTTATCTCCCTGAAGTTGAGTGGAGCAAACTGAAGAAAGCAAATCTTATCCCCCTGAAGTT
GCAGTGGAGCTAATGAAAGCCAATAATCCTATCTCCCTAAAGTTGCAATGGAGCAAATTAAAGAC
AAAAATCCTATCTCCTTGAAATTGCAGTGGAGCAGATTAAAGTTACA
Found at i:38387590 original size:222 final size:222
Alignment explanation
Indices: 38387204--38387650 Score: 675
Period size: 222 Copynumber: 2.0 Consensus size: 222
38387194 CCACAAATCC
38387204 TATCTCCCTAAGGTTACAGTGGAGCAGACTGAAGAAAACAAGTCTTATCCCCCTGAAGTTGCAGT
1 TATCTCCCTAAGGTTACAGTGGAGCAGACTGAAGAAAACAAGTCTTATCCCCCTGAAGTTGCAGT
* * * * * * *
38387269 GGGGCAAACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGTAGTGGAGCTAATTAAAGCCAATA
66 AGGGCAAACTGAAGATGGCAAATCTTATCTCCCTAAAGTTGCAATGGAGCAAATTAAAGACAAAA
* *
38387334 ATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCA-ATAATCCTATCTTCTTGAAGTTG
131 ATCCTATCTCCCTGAAATTGCAGTGGAGCAGATTAAAGCCACA-AATCCTATCTCCTTGAAGTTG
38387398 CA-GTGGAGCGGATTAAAGTTAAAAGTCT
195 -ATGTGGAGCGGATTAAAGTTAAAAGTCT
** *
38387426 TATCTCCCTGAA-GTTGTAGTGGAGCAGACTGAAGAAAGCAAGTCTTATCCCCCTGAAGTTGCAG
1 TATCTCCCT-AAGGTTACAGTGGAGCAGACTGAAGAAAACAAGTCTTATCCCCCTGAAGTTGCAG
*
38387490 TAGGGCAGACTGAAGATGGCAAATCTTATCTCCCTAAAGTTGCAATGGAGCAAATTAAAGACAAA
65 TAGGGCAAACTGAAGATGGCAAATCTTATCTCCCTAAAGTTGCAATGGAGCAAATTAAAGACAAA
* * ** *
38387555 AATCCTATCTCCTTGAAATTGTAGTGGAGCAGATTAAAGTTACAAATCTTATCTCCTTGAAGTTG
130 AATCCTATCTCCCTGAAATTGCAGTGGAGCAGATTAAAGCCACAAATCCTATCTCCTTGAAGTTG
*
38387620 ATGTGGAGCGGATTAAAGTTACAAGTCT
195 ATGTGGAGCGGATTAAAGTTAAAAGTCT
38387648 TAT
1 TAT
38387651 TGAAGAAAGC
Statistics
Matches: 203, Mismatches: 19, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
221 1 0.00
222 199 0.98
223 3 0.01
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.27
Consensus pattern (222 bp):
TATCTCCCTAAGGTTACAGTGGAGCAGACTGAAGAAAACAAGTCTTATCCCCCTGAAGTTGCAGT
AGGGCAAACTGAAGATGGCAAATCTTATCTCCCTAAAGTTGCAATGGAGCAAATTAAAGACAAAA
ATCCTATCTCCCTGAAATTGCAGTGGAGCAGATTAAAGCCACAAATCCTATCTCCTTGAAGTTGA
TGTGGAGCGGATTAAAGTTAAAAGTCT
Found at i:38387638 original size:44 final size:44
Alignment explanation
Indices: 38387195--38387650 Score: 332
Period size: 44 Copynumber: 10.3 Consensus size: 44
38387185 TCGGTGAAAC
* * * * *
38387195 CACAAATCCTATCTCCCT-AAGGTTACAGTGGAGCAGACTGAAGAA
1 CACAAATCTTATCTCCCTGAA-GTTGCAGTGGAGCAGATTAAAG-T
* * * * * * *
38387240 AACAAGTCTTATCCCCCTGAAGTTGCAGTGGGGCAAACTGAAGAT
1 CACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-T
** * *
38387285 GGCAAATCTTATCTCCCTGAAGTTGTAGTGGAGCTA-ATTAAAGC
1 CACAAATCTTATCTCCCTGAAGTTGCAGTGGAGC-AGATTAAAGT
* *
38387329 CA-ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC
1 CACA-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGT
* * * *
38387373 CA-ATAATCCTATCTTCTTGAAGTTGCAGTGGAGCGGATTAAAGT
1 CACA-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGT
* * * * *
38387417 TA-AAAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGA
1 CACAAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGT
* * * * *
38387461 AAGCAAGTCTTATCCCCCTGAAGTTGCAGTAGG-GCAGACTGAAGAT
1 CA-CAAATCTTATCTCCCTGAAGTTGCAGT-GGAGCAGATTAAAG-T
** * * * *
38387507 GGCAAATCTTATCTCCCTAAAGTTGCAATGGAGCAAATTAAAGA
1 CACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGT
* * * * *
38387551 CAAAAATCCTATCTCCTTGAAATTGTAGTGGAGCAGATTAAAGT
1 CACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGT
* * *
38387595 TACAAATCTTATCTCCTTGAAGTTG-ATGTGGAGCGGATTAAAGT
1 CACAAATCTTATCTCCCTGAAGTTGCA-GTGGAGCAGATTAAAGT
* *
38387639 TACAAGTCTTAT
1 CACAAATCTTAT
38387651 TGAAGAAAGC
Statistics
Matches: 334, Mismatches: 66, Indels: 23
0.79 0.16 0.05
Matches are distributed among these distances:
43 5 0.01
44 192 0.57
45 130 0.39
46 7 0.02
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (44 bp):
CACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGT
Found at i:38387879 original size:42 final size:41
Alignment explanation
Indices: 38387759--38387920 Score: 128
Period size: 42 Copynumber: 3.8 Consensus size: 41
38387749 TAAATCATAG
* * * *
38387759 ATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCATGGAAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATGAAGGAAA
* * **
38387800 ATCTTATCTCCTTGAAGTTGCAATGGAGCGGATTGAAGTG-AA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGTAGA-TGAAG-GAAA
* *
38387842 GTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGTAGA-TGAAG---GAAA
* * * *
38387887 ATCTTGTTTCCCTGAAGATTACAGTGGAATAGAT
1 ATCTTATCTCCCTGAAG-TTGCAGTGGAGTAGAT
38387921 CAAAACTATA
Statistics
Matches: 95, Mismatches: 20, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
41 26 0.27
42 37 0.39
43 1 0.01
44 1 0.01
45 17 0.18
46 13 0.14
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (41 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATGAAGGAAA
Found at i:38387999 original size:181 final size:179
Alignment explanation
Indices: 38387657--38388053 Score: 510
Period size: 181 Copynumber: 2.2 Consensus size: 179
38387647 TTATTGAAGA
* * ** * *
38387657 AAGC-AAGTCTTATCCCCCTGAAGTTGCAGTGGGGCAGACTGAAGATAGTGAATCTTATTTTCTT
1 AAGCTAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCT
* * **
38387721 GAAGCTACAGTGGAACATATTAAAGTTATAAATCATAGATCTTATCTCTCTGAAGTTGCAGTAGA
66 GAAGCTACAGTGGAACAGATCAAAACTATAAATCATAGATCTTATCTCTCTGAAGTTGCAGTAGA
* ** * *
38387786 GTAGATCATGGAAAATCTTATCTCCTTGAAGTTGCAATGGAGCGGATTG
131 GCAGATCACAGAAAACCTTATCTCCCTGAAGTTGCAATGGAGCGGATTG
* *
38387835 AAG-TGAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAATCTTGTTTCCC
1 AAGCT-AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCC
* *
38387899 TGAAGATTACAGTGGAATAGATCAAAACTATAAATCATAAGATCTTATCTCTCTGAAGTTGCAGT
65 TGAAG-CTACAGTGGAACAGATCAAAACTATAAATCAT-AGATCTTATCTCTCTGAAGTTGCAGT
** *
38387964 AGAGCAGATCACATCAAACCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTG
128 AGAGCAGATCACAGAAAACCTTATCTCCCTGAAGTTGCAATGGAGCGGATTG
* * *
38388016 AAGCTACTAATCCTATCTCCCTGAAGTTACAGTGGAGC
1 AAGCTA--AGTCTTATCTCCCTGAAGTTGCAGTGGAGC
38388054 GGATTAAAAT
Statistics
Matches: 186, Mismatches: 26, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
178 3 0.02
179 56 0.30
180 26 0.14
181 74 0.40
182 1 0.01
183 26 0.14
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (179 bp):
AAGCTAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCT
GAAGCTACAGTGGAACAGATCAAAACTATAAATCATAGATCTTATCTCTCTGAAGTTGCAGTAGA
GCAGATCACAGAAAACCTTATCTCCCTGAAGTTGCAATGGAGCGGATTG
Found at i:38388291 original size:89 final size:89
Alignment explanation
Indices: 38388138--38388424 Score: 335
Period size: 89 Copynumber: 3.2 Consensus size: 89
38388128 CCTGAAGTTA
* * * * * *
38388138 CAGTGGAGCAGACTGACGACAGCAGATCTTGTCTTCCTATATTGGCAGCGAAGCAGATCGAAGAC
1 CAGTGGAGTAGACTGAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGTGAAGCAGATCAAAGAC
* *
38388203 ACTAGCCTTGGCTCCTTGAGTTTG
66 ACAAGCCTTGCCTCCTTGAGTTTG
* * * *
38388227 TAGTGGGGTAGACTGAAGATAGCAGATCTTGTCTTTCTGTACTGGCAGTGAAGCAGATCAAAGAC
1 CAGTGGAGTAGACTGAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGTGAAGCAGATCAAAGAC
** * *
38388292 ACAAATCTTGCCTCCCTAAGTTTG
66 ACAAGCCTTGCCTCCTTGAGTTTG
* * *
38388316 CAGTAGAGTAGACTGAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGTGAAACAGATCGAAA-A
1 CAGTGGAGTAGACTGAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGTGAAGCAGATC-AAAGA
*
38388380 CACCAGCCTTGCCT-CTCTGAGTTTG
65 CACAAGCCTTGCCTCCT-TGAGTTTG
* **
38388405 CAGTGTAGTAGGTTGAAGAT
1 CAGTGGAGTAGACTGAAGAT
38388425 TGTAGATCCT
Statistics
Matches: 163, Mismatches: 33, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
88 1 0.01
89 159 0.98
90 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (89 bp):
CAGTGGAGTAGACTGAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGTGAAGCAGATCAAAGAC
ACAAGCCTTGCCTCCTTGAGTTTG
Found at i:38388379 original size:45 final size:45
Alignment explanation
Indices: 38388245--38388379 Score: 111
Period size: 45 Copynumber: 3.0 Consensus size: 45
38388235 TAGACTGAAG
* *
38388245 ATAGCAGATCTTGTCTTTCTGTACTGGCAGTGAAGCAGATC-AAA
1 ATAGCAGATCTTGTCTTCCTGTATTGGCAGTGAAGCAGATCGAAA
* * * * *
38388289 GACA-CAAATCTTGCCTCCCTAAGT-TT-GCAGT-AGAGTAGA-CTGAAA
1 -ATAGCAGATCTTGTCTTCCT--GTATTGGCAGTGA-AGCAGATC-GAAA
*
38388334 ATAGCAGATCTTGTCTTCCTGTATTGGCAGTGAAACAGATCGAAA
1 ATAGCAGATCTTGTCTTCCTGTATTGGCAGTGAAGCAGATCGAAA
38388379 A
1 A
38388380 CACCAGCCTT
Statistics
Matches: 67, Mismatches: 13, Indels: 20
0.67 0.13 0.20
Matches are distributed among these distances:
43 4 0.06
44 26 0.39
45 33 0.49
46 4 0.06
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.27
Consensus pattern (45 bp):
ATAGCAGATCTTGTCTTCCTGTATTGGCAGTGAAGCAGATCGAAA
Found at i:38388567 original size:44 final size:44
Alignment explanation
Indices: 38388519--38388724 Score: 145
Period size: 44 Copynumber: 4.7 Consensus size: 44
38388509 AAGCCACCAG
* * *
38388519 TCCTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAGATTGTAGA
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGA
* * **
38388563 TCCTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGT-GAA
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAG-A
* * * * ***
38388607 T-CTGATCT-TCT-CG-AGATAGTAGGAAGCAGATTTAAGCTACCAG-
1 TCCT-ATCTCCCTAAGCAG-TAGT-GG-AGCAGATTGAAGATTGTAGA
* * * *
38388650 TCCTATCTCCCTTAGCAGTAGTGGAGTAGGTTGAAGATTGTATA
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGA
* *
38388694 TCCTGTCTCCCTAAGTAGTAGTGGAGCAGAT
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGAT
38388725 CAAAGACGGC
Statistics
Matches: 119, Mismatches: 32, Indels: 22
0.69 0.18 0.13
Matches are distributed among these distances:
41 2 0.02
42 5 0.04
43 22 0.18
44 82 0.69
45 6 0.05
46 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (44 bp):
TCCTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGA
Found at i:38388714 original size:131 final size:130
Alignment explanation
Indices: 38388406--38388795 Score: 566
Period size: 131 Copynumber: 3.0 Consensus size: 130
38388396 CTGAGTTTGC
*
38388406 AGTGTAGTAGGTTGAAGATTGTAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGG
1 AGTGGAGTAGGTTGAAGATTGTAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGG
* **
38388471 CGAATCTTATCTTCCCAAGGTAGTAAGGGCGCAGATTTAAGCCACCAGTCCTATCTCCCTGAGCA
66 CGAATCTTATCTT-CCGAGGTAGT-AGGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTGAGCA
38388536 GT
129 GT
* *
38388538 AGTGGAGTAGGTTGAAGATTGTAGATCCTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGG
1 AGTGGAGTAGGTTGAAGATTGTAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGG
* * * * *
38388603 TGAATCTGATCTTCTCGAGATAGTAGGAAGCAGATTTAAGCTACCAGTCCTATCTCCCTTAGCAG
66 CGAATCTTATCTTC-CGAGGTAGTAGGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTGAGCAG
38388668 T
130 T
* * *
38388669 AGTGGAGTAGGTTGAAGATTGTATATCCTGTCTCCCTAAGTAGTAGTGGAGCAGATCAAAGACGG
1 AGTGGAGTAGGTTGAAGATTGTAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGG
* * *
38388734 CGAGTCTTATCTTCCTGAGGTAGTAGGGAAGCAAATTTAAGCCACCAG-CCTTATCTTCCTGA
66 CGAATCTTATCTTCC-GAGGTAGTA-GGAAGCAGATTTAAGCCACCAGTCC-TATCTCCCTGA
38388796 AGTTGCAGTG
Statistics
Matches: 230, Mismatches: 24, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
130 1 0.00
131 120 0.52
132 109 0.47
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (130 bp):
AGTGGAGTAGGTTGAAGATTGTAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGG
CGAATCTTATCTTCCGAGGTAGTAGGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTGAGCAGT
Found at i:38389303 original size:22 final size:22
Alignment explanation
Indices: 38389243--38389300 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 22
38389233 AATCTTCAAG
38389243 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
38389262 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
38389284 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
38389301 GATTTAAGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.39
22 8 0.24
23 12 0.36
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:38395383 original size:17 final size:17
Alignment explanation
Indices: 38395359--38395399 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
38395349 TCAATAGTAG
38395359 AAAAGAAGAA-AATAAAA
1 AAAAGAAGAACAA-AAAA
*
38395376 AGAAGAAGAACAAAAAA
1 AAAAGAAGAACAAAAAA
38395393 AAAAGAA
1 AAAAGAA
38395400 CTTAAAAGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 19 0.90
18 2 0.10
ACGTcount: A:0.80, C:0.02, G:0.15, T:0.02
Consensus pattern (17 bp):
AAAAGAAGAACAAAAAA
Found at i:38395390 original size:20 final size:19
Alignment explanation
Indices: 38395357--38395399 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
38395347 AATCAATAGT
* *
38395357 AGAAAAGAAGAAAATAAAA
1 AGAAAAGAACAAAAAAAAA
38395376 AGAAGAAGAACAAAAAAAAA
1 AGAA-AAGAACAAAAAAAAA
38395396 AGAA
1 AGAA
38395400 CTTAAAAGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.79, C:0.02, G:0.16, T:0.02
Consensus pattern (19 bp):
AGAAAAGAACAAAAAAAAA
Found at i:38395467 original size:41 final size:41
Alignment explanation
Indices: 38395422--38395502 Score: 162
Period size: 41 Copynumber: 2.0 Consensus size: 41
38395412 TAGAAAAGAA
38395422 AAGAAAGATAACATTTCCTTTGAAGGTTTTAAATTAACCAG
1 AAGAAAGATAACATTTCCTTTGAAGGTTTTAAATTAACCAG
38395463 AAGAAAGATAACATTTCCTTTGAAGGTTTTAAATTAACCA
1 AAGAAAGATAACATTTCCTTTGAAGGTTTTAAATTAACCA
38395503 TCACCCCTTC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.42, C:0.12, G:0.14, T:0.32
Consensus pattern (41 bp):
AAGAAAGATAACATTTCCTTTGAAGGTTTTAAATTAACCAG
Found at i:38399807 original size:166 final size:166
Alignment explanation
Indices: 38399531--38400020 Score: 863
Period size: 166 Copynumber: 3.0 Consensus size: 166
38399521 TCACCCCCAT
* * * *
38399531 ATATTTACCCTGGAAGGCATTCTTGAAATAGTCCCAGATCACTTGTTCAGGTTGAGCACCTTGCC
1 ATATTTACCCTGGAAGGCGTTATTGAAATAGTCCCAGTTCACTTGTTCAGGTTGAGCACCTTGCT
* * *
38399596 CAACAGTTAACCACCATTGATAAGCTTCGCTCTGGAGTGGGGACACAACACCCCTCAATTTCTGA
66 CAACAGTTAACCACCACTGATAAGCTTCGTTCTGGAGTAGGGACACAACACCCCTCAATTTCTGA
38399661 GTAGGAGTACAGTTAAGGTCTGTCATAACACCCCGC
131 GTAGGAGTACAGTTAAGGTCTGTCATAACACCCCGC
*
38399697 ATATTTACCCTGGAAGGCGTTTTTGAAATAGTCCCAGTTCACTTGTTCAGGTTGAGCACCTTGCT
1 ATATTTACCCTGGAAGGCGTTATTGAAATAGTCCCAGTTCACTTGTTCAGGTTGAGCACCTTGCT
* *
38399762 CAACAGTTAACCACCACTGATAAGCTTCGTTTTAGAGTAGGGACACAACACCCCTCAATTTCTGA
66 CAACAGTTAACCACCACTGATAAGCTTCGTTCTGGAGTAGGGACACAACACCCCTCAATTTCTGA
38399827 GTAGGAGTACAGTTAAGGTCTGTCATAACACCCCGC
131 GTAGGAGTACAGTTAAGGTCTGTCATAACACCCCGC
38399863 ATATTTACCCTGGAAGGCGTTATTGAAATAGTCCCAGTTCACTTGTTCAGGTTGAGCACCTTGCT
1 ATATTTACCCTGGAAGGCGTTATTGAAATAGTCCCAGTTCACTTGTTCAGGTTGAGCACCTTGCT
* * *
38399928 CAACAGTTAACCACTACTGACAAGCTTCGTTCTGGAGTAGGGACACAACACCCCTCAATTTTTGA
66 CAACAGTTAACCACCACTGATAAGCTTCGTTCTGGAGTAGGGACACAACACCCCTCAATTTCTGA
38399993 GTAGGAGTACAGTTAAGGTCTGTCATAA
131 GTAGGAGTACAGTTAAGGTCTGTCATAA
38400021 TACGCTCAGT
Statistics
Matches: 309, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
166 309 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.28
Consensus pattern (166 bp):
ATATTTACCCTGGAAGGCGTTATTGAAATAGTCCCAGTTCACTTGTTCAGGTTGAGCACCTTGCT
CAACAGTTAACCACCACTGATAAGCTTCGTTCTGGAGTAGGGACACAACACCCCTCAATTTCTGA
GTAGGAGTACAGTTAAGGTCTGTCATAACACCCCGC
Found at i:38419718 original size:26 final size:26
Alignment explanation
Indices: 38419687--38419736 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
38419677 TTAGATCAAA
38419687 ATTTTCATATTTTCAGAACATATATC
1 ATTTTCATATTTTCAGAACATATATC
* *
38419713 ATTTTCATATTTTTAGAACGTATA
1 ATTTTCATATTTTCAGAACATATA
38419737 GCATATCAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.34, C:0.12, G:0.06, T:0.48
Consensus pattern (26 bp):
ATTTTCATATTTTCAGAACATATATC
Found at i:38425467 original size:16 final size:16
Alignment explanation
Indices: 38425446--38425500 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
38425436 AATGCCATTA
38425446 TTCTAAA-TAATAGTTG
1 TTCTAAACT-ATAGTTG
*
38425462 TTCTAAACTTTAGTTG
1 TTCTAAACTATAGTTG
* *
38425478 TTCTTAAC-ATAAGTTA
1 TTCTAAACTAT-AGTTG
38425494 TTCTAAA
1 TTCTAAA
38425501 ATAACAACAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
15 1 0.03
16 30 0.94
17 1 0.03
ACGTcount: A:0.35, C:0.11, G:0.09, T:0.45
Consensus pattern (16 bp):
TTCTAAACTATAGTTG
Found at i:38425602 original size:16 final size:16
Alignment explanation
Indices: 38425577--38425617 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
38425567 ATAGTTGTTC
*
38425577 TCTGAACAACAACTGT
1 TCTGAACAACAACTAT
*
38425593 TCTGAGCAACAACTAT
1 TCTGAACAACAACTAT
*
38425609 TCTAAACAA
1 TCTGAACAA
38425618 GAGTTGTTGC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.41, C:0.24, G:0.10, T:0.24
Consensus pattern (16 bp):
TCTGAACAACAACTAT
Found at i:38426107 original size:15 final size:16
Alignment explanation
Indices: 38426087--38426117 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
38426077 TTGTTTAGTT
38426087 ATTTATATTT-TTAAA
1 ATTTATATTTATTAAA
38426102 ATTTATATTTATTAAA
1 ATTTATATTTATTAAA
38426118 CAATATATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
ATTTATATTTATTAAA
Found at i:38433764 original size:39 final size:39
Alignment explanation
Indices: 38433721--38433956 Score: 222
Period size: 39 Copynumber: 6.1 Consensus size: 39
38433711 TTAAATTATG
* * * *
38433721 AATGTTATGTGATTATACGAGTATTGCAATTTATGCTTT
1 AATGTTATGTGATTATACAAGTATTGTAATATATGCTTA
* *
38433760 AATGTTATGTGATTATACGAGTATTGTAATATATTCTTA
1 AATGTTATGTGATTATACAAGTATTGTAATATATGCTTA
* * ** *
38433799 AAAGTTATGTGATTATATAAGTATTGTGTTATATGCTTG
1 AATGTTATGTGATTATACAAGTATTGTAATATATGCTTA
* * *
38433838 AATGTTATGAGATTCTACAAGTATTGTGATATATGCTTA
1 AATGTTATGTGATTATACAAGTATTGTAATATATGCTTA
** * * *
38433877 AATGTTATGTGATTATTTGAA-CATTGTGATATATGCTTG
1 AATGTTATGTGATTA-TACAAGTATTGTAATATATGCTTA
* * ** * * *
38433916 TATGTTAGGTGATTATATGAGTACTATGATATATGCTTA
1 AATGTTATGTGATTATACAAGTATTGTAATATATGCTTA
38433955 AA
1 AA
38433957 AGTGAATATG
Statistics
Matches: 162, Mismatches: 33, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
38 2 0.01
39 157 0.97
40 3 0.02
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (39 bp):
AATGTTATGTGATTATACAAGTATTGTAATATATGCTTA
Found at i:38433928 original size:117 final size:117
Alignment explanation
Indices: 38433719--38433953 Score: 281
Period size: 117 Copynumber: 2.0 Consensus size: 117
38433709 TCTTAAATTA
* * * * **
38433719 TGAATGTTATGTGATTATACGAGTATTGCAATTTATGCTTTAATGTTATGTGATTATACGAGTAT
1 TGAATGTTATGAGATTATACAAGTATTGCAATATATGCTTAAATGTTATGTGATTATACGAACAT
* * * * *
38433784 TGTAATATATTCTTAAAAGTTATGTGATTATATAAGTATTGTGTTATATGCT
66 TGTAATATATGCTTAAAAGTTAGGTGATTATATAAGTACTATGATATATGCT
* ** **
38433836 TGAATGTTATGAGATTCTACAAGTATTGTGATATATGCTTAAATGTTATGTGATTATTTGAACAT
1 TGAATGTTATGAGATTATACAAGTATTGCAATATATGCTTAAATGTTATGTGATTATACGAACAT
* ** * *
38433901 TGTGATATATGCTTGTATGTTAGGTGATTATATGAGTACTATGATATATGCT
66 TGTAATATATGCTTAAAAGTTAGGTGATTATATAAGTACTATGATATATGCT
38433953 T
1 T
38433954 AAAAGTGAAT
Statistics
Matches: 97, Mismatches: 21, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
117 97 1.00
ACGTcount: A:0.30, C:0.06, G:0.19, T:0.45
Consensus pattern (117 bp):
TGAATGTTATGAGATTATACAAGTATTGCAATATATGCTTAAATGTTATGTGATTATACGAACAT
TGTAATATATGCTTAAAAGTTAGGTGATTATATAAGTACTATGATATATGCT
Found at i:38438169 original size:21 final size:21
Alignment explanation
Indices: 38438145--38438185 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
38438135 GTCAAAAGTA
38438145 TGAATATAAAATGTTCATGTG
1 TGAATATAAAATGTTCATGTG
*
38438166 TGAATTTAAAATGTTCATGT
1 TGAATATAAAATGTTCATGT
38438186 AGTTATAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.05, G:0.17, T:0.41
Consensus pattern (21 bp):
TGAATATAAAATGTTCATGTG
Found at i:38438460 original size:27 final size:28
Alignment explanation
Indices: 38438406--38438472 Score: 109
Period size: 27 Copynumber: 2.4 Consensus size: 28
38438396 GTGTTATATG
*
38438406 TATAATATATATGTGTGGTTTTGCTATA
1 TATAATATATATGTGTGGTTTTACTATA
*
38438434 TATAATATATATGTG-GGTTTTATTATA
1 TATAATATATATGTGTGGTTTTACTATA
38438461 TATAATATATAT
1 TATAATATATAT
38438473 ACGTTTATAG
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
27 22 0.59
28 15 0.41
ACGTcount: A:0.34, C:0.01, G:0.13, T:0.51
Consensus pattern (28 bp):
TATAATATATATGTGTGGTTTTACTATA
Found at i:38438885 original size:18 final size:18
Alignment explanation
Indices: 38438864--38438903 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
38438854 ATTTGGTGAT
*
38438864 CTGTACTAATATGGCAAA
1 CTGTACTAATATGCCAAA
* *
38438882 CTGTATTAATTTGCCAAA
1 CTGTACTAATATGCCAAA
38438900 CTGT
1 CTGT
38438904 GTATTGTGAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (18 bp):
CTGTACTAATATGCCAAA
Found at i:38439814 original size:269 final size:269
Alignment explanation
Indices: 38439331--38439864 Score: 1014
Period size: 269 Copynumber: 2.0 Consensus size: 269
38439321 GAACCAATCA
38439331 TAATCATGCATATTGTTCCTAATACACAGGCTAAGATAACATATGCGAACCCCTACTTAATTAAT
1 TAATCATGCATATTGTTCCTAATACACAGGCTAAGATAACATATGCGAACCCCTACTTAATTAAT
38439396 ATTTTAACCTTGATTTCTCCTAGTGCAAACTAGTACAATTTTGTTGAGTGTTGCGTATACATTCT
66 ATTTTAACCTTGATTTCTCCTAGTGCAAACTAGTACAATTTTGTTGAGTGTTGCGTATACATTCT
38439461 GTGCGATTTTAATGAGTCAAAAGTATGAATTTAAAATGTTCATGTAGTTATAAGAATAAAATAGG
131 GTGCGATTTTAATGAGTCAAAAGTATGAATTTAAAATGTTCATGTAGTTATAAGAATAAAATAGG
* * *
38439526 TAGGTCGTAGTTGTAAACCATGTAGTTGACGTGATAAGTGTGTGTGAATTGTGCATCTAAATATT
196 TAGGTCGTAGCTATAAACCATGTAGTTGACGTGATAAGTGTGTGTGAATTGTGCATCTAAATACT
38439591 GTGTGCATC
261 GTGTGCATC
38439600 TAATCATGCATATTGTTCCTAATACACAGGCTAAGATAACATATGCGAACCCCTACTTAATTAAT
1 TAATCATGCATATTGTTCCTAATACACAGGCTAAGATAACATATGCGAACCCCTACTTAATTAAT
38439665 ATTTTAACCTTGATTTCTCCTAGTGCAAACTAGTACAATTTTGTTGAGTGTTGCGTATACATTCT
66 ATTTTAACCTTGATTTCTCCTAGTGCAAACTAGTACAATTTTGTTGAGTGTTGCGTATACATTCT
* *
38439730 GTTCGATTTTAATGAGTCAAAAGTATGAATTTAAAATGTTCATGTAGTTATAATAATAAAATAGG
131 GTGCGATTTTAATGAGTCAAAAGTATGAATTTAAAATGTTCATGTAGTTATAAGAATAAAATAGG
*
38439795 TAGGTCGTAGCTATAAACCATGTAGTTGACGTGATAAGTGTGTGTGAATTGTGCATCTAATTACT
196 TAGGTCGTAGCTATAAACCATGTAGTTGACGTGATAAGTGTGTGTGAATTGTGCATCTAAATACT
38439860 GTGTG
261 GTGTG
38439865 TATATATATA
Statistics
Matches: 259, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
269 259 1.00
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.36
Consensus pattern (269 bp):
TAATCATGCATATTGTTCCTAATACACAGGCTAAGATAACATATGCGAACCCCTACTTAATTAAT
ATTTTAACCTTGATTTCTCCTAGTGCAAACTAGTACAATTTTGTTGAGTGTTGCGTATACATTCT
GTGCGATTTTAATGAGTCAAAAGTATGAATTTAAAATGTTCATGTAGTTATAAGAATAAAATAGG
TAGGTCGTAGCTATAAACCATGTAGTTGACGTGATAAGTGTGTGTGAATTGTGCATCTAAATACT
GTGTGCATC
Found at i:38440048 original size:27 final size:28
Alignment explanation
Indices: 38439994--38440060 Score: 109
Period size: 27 Copynumber: 2.4 Consensus size: 28
38439984 GTGTTATTTG
*
38439994 TATAATATATATGTGTGGTTTTGCTATA
1 TATAATATATATGTGTGGTTTTACTATA
*
38440022 TATAATATATATGTG-GGTTTTATTATA
1 TATAATATATATGTGTGGTTTTACTATA
38440049 TATAATATATAT
1 TATAATATATAT
38440061 ACGTTTATAG
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
27 22 0.59
28 15 0.41
ACGTcount: A:0.34, C:0.01, G:0.13, T:0.51
Consensus pattern (28 bp):
TATAATATATATGTGTGGTTTTACTATA
Found at i:38441076 original size:21 final size:21
Alignment explanation
Indices: 38441051--38441095 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
38441041 TGAGTCAAAA
38441051 GTATGAATTTAAAATGTTAAT
1 GTATGAATTTAAAATGTTAAT
*
38441072 GTATGAATTTAAAATGTTCAT
1 GTATGAATTTAAAATGTTAAT
38441093 GTA
1 GTA
38441096 GTTATAAGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.40, C:0.02, G:0.16, T:0.42
Consensus pattern (21 bp):
GTATGAATTTAAAATGTTAAT
Found at i:38441556 original size:269 final size:269
Alignment explanation
Indices: 38441077--38441722 Score: 1274
Period size: 269 Copynumber: 2.4 Consensus size: 269
38441067 TTAATGTATG
*
38441077 AATTTAAAATGTTCATGTAGTTATAAGAATAAAATAGGTAGGTCGTAGCTGTAAACCATGTAGTT
1 AATTTAAAATGTTCATGTAGTTATAATAATAAAATAGGTAGGTCGTAGCTGTAAACCATGTAGTT
38441142 GACGTGATAAGTGTGTGTGAATTGTGCATCTAATTATTGTGTGCATCTAATCATGCATATTGTTC
66 GACGTGATAAGTGTGTGTGAATTGTGCATCTAATTATTGTGTGCATCTAATCATGCATATTGTTC
38441207 CTAATACAAAGGCTAAGATAACATATGCGAACCCCTACTTAATTAATATTTTAACCTTGATTTCT
131 CTAATACAAAGGCTAAGATAACATATGCGAACCCCTACTTAATTAATATTTTAACCTTGATTTCT
38441272 CCTAGTGCAAACTAGTACAATTTTGTTGAGTGTTGCGTATACATTCTATTCGATTTTAATGAGTC
196 CCTAGTGCAAACTAGTACAATTTTGTTGAGTGTTGCGTATACATTCTATTCGATTTTAATGAGTC
38441337 AAAAGTACA
261 AAAAGTACA
38441346 AATTTAAAATGTTCATGTAGTTATAATAATAAAATAGGTAGGTCGTAGCTGTAAACCATGTAGTT
1 AATTTAAAATGTTCATGTAGTTATAATAATAAAATAGGTAGGTCGTAGCTGTAAACCATGTAGTT
38441411 GACGTGATAAGTGTGTGTGAATTGTGCATCTAATTATTGTGTGCATCTAATCATGCATATTGTTC
66 GACGTGATAAGTGTGTGTGAATTGTGCATCTAATTATTGTGTGCATCTAATCATGCATATTGTTC
38441476 CTAATACAAAGGCTAAGATAACATATGCGAACCCCTACTTAATTAATATTTTAACCTTGATTTCT
131 CTAATACAAAGGCTAAGATAACATATGCGAACCCCTACTTAATTAATATTTTAACCTTGATTTCT
*
38441541 CCTAGTGCAAACTAGTACAATTTTGTTGAGTGTTGTGTATACATTCTATTCGATTTTAATGAGTC
196 CCTAGTGCAAACTAGTACAATTTTGTTGAGTGTTGCGTATACATTCTATTCGATTTTAATGAGTC
38441606 AAAAGTACA
261 AAAAGTACA
38441615 AATTTAAAATGTTCATGTAGTTATAATAATAAAATAGGTAGGTCGTAGCTGTAAACCATGTAGTT
1 AATTTAAAATGTTCATGTAGTTATAATAATAAAATAGGTAGGTCGTAGCTGTAAACCATGTAGTT
38441680 GACGTGATAAGTGTGTGTGAATTGTGCATCTAATTATTGTGTG
66 GACGTGATAAGTGTGTGTGAATTGTGCATCTAATTATTGTGTG
38441723 TGTATATATA
Statistics
Matches: 375, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
269 375 1.00
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.37
Consensus pattern (269 bp):
AATTTAAAATGTTCATGTAGTTATAATAATAAAATAGGTAGGTCGTAGCTGTAAACCATGTAGTT
GACGTGATAAGTGTGTGTGAATTGTGCATCTAATTATTGTGTGCATCTAATCATGCATATTGTTC
CTAATACAAAGGCTAAGATAACATATGCGAACCCCTACTTAATTAATATTTTAACCTTGATTTCT
CCTAGTGCAAACTAGTACAATTTTGTTGAGTGTTGCGTATACATTCTATTCGATTTTAATGAGTC
AAAAGTACA
Found at i:38441911 original size:33 final size:32
Alignment explanation
Indices: 38441854--38441923 Score: 104
Period size: 33 Copynumber: 2.2 Consensus size: 32
38441844 TATATGTATA
*
38441854 ATATATATGTGTGGTTTTGCTATATATAATAT
1 ATATATATGTGTGGTTTTACTATATATAATAT
* *
38441886 ATATATATTTGTGGGTTTTATTATATATAATAT
1 ATATATATGTGT-GGTTTTACTATATATAATAT
38441919 ATATA
1 ATATA
38441924 CGTTTATAGG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 11 0.32
33 23 0.68
ACGTcount: A:0.34, C:0.01, G:0.13, T:0.51
Consensus pattern (32 bp):
ATATATATGTGTGGTTTTACTATATATAATAT
Found at i:38441944 original size:35 final size:33
Alignment explanation
Indices: 38441874--38441937 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
38441864 GTGGTTTTGC
* *
38441874 TATATATAATATATATATATTTGTGGGTTTTAT
1 TATATATAATATATATACATTTATGGGTTTTAT
* *
38441907 TATATATAATATATATACGTTTATAGGTTTT
1 TATATATAATATATATACATTTATGGGTTTT
38441938 GTATTATCTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.34, C:0.02, G:0.11, T:0.53
Consensus pattern (33 bp):
TATATATAATATATATACATTTATGGGTTTTAT
Found at i:38442331 original size:18 final size:18
Alignment explanation
Indices: 38442310--38442349 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
38442300 ATTTGGTGAT
*
38442310 CTGTACTAATATGGCAAA
1 CTGTACTAATATGCCAAA
* *
38442328 CTGTATTAATTTGCCAAA
1 CTGTACTAATATGCCAAA
38442346 CTGT
1 CTGT
38442350 GTATTGTGAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (18 bp):
CTGTACTAATATGCCAAA
Found at i:38444342 original size:25 final size:25
Alignment explanation
Indices: 38444309--38444384 Score: 80
Period size: 25 Copynumber: 3.0 Consensus size: 25
38444299 ATTAGTTGTA
* * *
38444309 AACGGTAAGCTCTTCTGAGCTAAAT
1 AACGATAAGCTCCTCCGAGCTAAAT
* *
38444334 AATGATAAGCTCCTCCGAGCTGAAT
1 AACGATAAGCTCCTCCGAGCTAAAT
* * *
38444359 AACGGTAAGCTCCTCCAAGCTGAAT
1 AACGATAAGCTCCTCCGAGCTAAAT
38444384 A
1 A
38444385 GCAGTAAGCT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.24
Consensus pattern (25 bp):
AACGATAAGCTCCTCCGAGCTAAAT
Found at i:38444391 original size:25 final size:25
Alignment explanation
Indices: 38444339--38444395 Score: 87
Period size: 25 Copynumber: 2.3 Consensus size: 25
38444329 TAAATAATGA
* *
38444339 TAAGCTCCTCCGAGCTGAATAACGG
1 TAAGCTCCTCCAAGCTGAATAACAG
*
38444364 TAAGCTCCTCCAAGCTGAATAGCAG
1 TAAGCTCCTCCAAGCTGAATAACAG
38444389 TAAGCTC
1 TAAGCTC
38444396 ATATGAGCTG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (25 bp):
TAAGCTCCTCCAAGCTGAATAACAG
Found at i:38446028 original size:51 final size:51
Alignment explanation
Indices: 38445973--38446071 Score: 135
Period size: 51 Copynumber: 1.9 Consensus size: 51
38445963 GCATGAACTG
* * * *
38445973 TTATTTTGCATGAATTGTTATTTGGTATGAACTGATATTTCATATGAATTA
1 TTATTTTGCATGAACTCTCATTTGGTAAGAACTGATATTTCATATGAATTA
* * *
38446024 TTATTTTGCATGAGCTCTCATTTGGTAAGAACTGTTATTTTATATGAA
1 TTATTTTGCATGAACTCTCATTTGGTAAGAACTGATATTTCATATGAA
38446072 CAAATGTTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 41 1.00
ACGTcount: A:0.28, C:0.08, G:0.16, T:0.47
Consensus pattern (51 bp):
TTATTTTGCATGAACTCTCATTTGGTAAGAACTGATATTTCATATGAATTA
Found at i:38446072 original size:17 final size:17
Alignment explanation
Indices: 38445965--38446072 Score: 81
Period size: 17 Copynumber: 6.4 Consensus size: 17
38445955 ATGATAGAGC
*
38445965 ATGAACTGTTATTTTGC
1 ATGAACTGTTATTTTGT
* *
38445982 ATGAATTGTTATTTGGT
1 ATGAACTGTTATTTTGT
* **
38445999 ATGAACTGATATTTCAT
1 ATGAACTGTTATTTTGT
* * *
38446016 ATGAATTATTATTTTGC
1 ATGAACTGTTATTTTGT
* * * *
38446033 ATGAGCTCTCATTTGGT
1 ATGAACTGTTATTTTGT
* *
38446050 AAGAACTGTTATTTTAT
1 ATGAACTGTTATTTTGT
38446067 ATGAAC
1 ATGAAC
38446073 AAATGTTTTA
Statistics
Matches: 65, Mismatches: 26, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
17 65 1.00
ACGTcount: A:0.29, C:0.09, G:0.17, T:0.45
Consensus pattern (17 bp):
ATGAACTGTTATTTTGT
Found at i:38448724 original size:24 final size:23
Alignment explanation
Indices: 38448678--38448727 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
38448668 CGATTTATCC
*
38448678 CATTTTTACTGGCAGCTTGTCTG
1 CATTTTTACTGGCAGATTGTCTG
* *
38448701 CATTTTTACTGTCAGAATTTTCTG
1 CATTTTTACTGGCAG-ATTGTCTG
38448725 CAT
1 CAT
38448728 ATTGTTATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 14 0.61
24 9 0.39
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.46
Consensus pattern (23 bp):
CATTTTTACTGGCAGATTGTCTG
Found at i:38451132 original size:43 final size:43
Alignment explanation
Indices: 38451052--38451149 Score: 110
Period size: 43 Copynumber: 2.3 Consensus size: 43
38451042 CTTTGGTTTA
* * *
38451052 TTCGATGATGCACTTTGTGTGCCAGTATAATTGCTTCAGCTTG
1 TTCGATGATGCACTGTGTGTGCCAATATAATTCCTTCAGCTTG
* **
38451095 TTCGATGGTGCACTGTGTGTGCCAATATGTTTCCTTCAG-TT-
1 TTCGATGATGCACTGTGTGTGCCAATATAATTCCTTCAGCTTG
38451136 TATCTGATGATGCA
1 T-TC-GATGATGCA
38451150 GTACGTCTGT
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
41 1 0.02
42 4 0.09
43 41 0.89
ACGTcount: A:0.18, C:0.18, G:0.23, T:0.40
Consensus pattern (43 bp):
TTCGATGATGCACTGTGTGTGCCAATATAATTCCTTCAGCTTG
Found at i:38454734 original size:23 final size:23
Alignment explanation
Indices: 38454708--38454756 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
38454698 TGAAAAGTTA
*
38454708 GAAGAGTGAAGAGACTTGAATAT
1 GAAGAGTGAAGAGACTTGAAGAT
38454731 GAAGAGTGAAGAGACTTGAAGAT
1 GAAGAGTGAAGAGACTTGAAGAT
38454754 GAA
1 GAA
38454757 AAGTTACACA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.45, C:0.04, G:0.33, T:0.18
Consensus pattern (23 bp):
GAAGAGTGAAGAGACTTGAAGAT
Found at i:38459238 original size:23 final size:23
Alignment explanation
Indices: 38459212--38459260 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
38459202 TGAAAAGTTA
*
38459212 GAAGAGTGAAGAGACTTGAATAT
1 GAAGAGTGAAGAGACTTGAAGAT
38459235 GAAGAGTGAAGAGACTTGAAGAT
1 GAAGAGTGAAGAGACTTGAAGAT
38459258 GAA
1 GAA
38459261 AAGTTACACA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.45, C:0.04, G:0.33, T:0.18
Consensus pattern (23 bp):
GAAGAGTGAAGAGACTTGAAGAT
Found at i:38465706 original size:42 final size:41
Alignment explanation
Indices: 38465660--38465762 Score: 135
Period size: 39 Copynumber: 2.6 Consensus size: 41
38465650 TAACTCTTTA
*
38465660 TATAGGAGTTGTAAGTGACTATTCATCTACATCAC-TAAATGC
1 TATAGGAGTTGT--GTGACTATTCATCTACATAACTTAAATGC
*
38465702 TATAGGAG-T-TGTGACTATTCATTTACATAACTTAAATGC
1 TATAGGAGTTGTGTGACTATTCATCTACATAACTTAAATGC
38465741 TATAGGAG-T-TGTGACTATTCAT
1 TATAGGAGTTGTGTGACTATTCAT
38465763 GCATGAGTGT
Statistics
Matches: 58, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
38 19 0.33
39 29 0.50
40 1 0.02
41 1 0.02
42 8 0.14
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (41 bp):
TATAGGAGTTGTGTGACTATTCATCTACATAACTTAAATGC
Found at i:38465729 original size:38 final size:39
Alignment explanation
Indices: 38465674--38465762 Score: 153
Period size: 39 Copynumber: 2.3 Consensus size: 39
38465664 GGAGTTGTAA
*
38465674 GTGACTATTCATCTACATCAC-TAAATGCTATAGGAGTT
1 GTGACTATTCATCTACATAACTTAAATGCTATAGGAGTT
*
38465712 GTGACTATTCATTTACATAACTTAAATGCTATAGGAGTT
1 GTGACTATTCATCTACATAACTTAAATGCTATAGGAGTT
38465751 GTGACTATTCAT
1 GTGACTATTCAT
38465763 GCATGAGTGT
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
38 19 0.40
39 29 0.60
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (39 bp):
GTGACTATTCATCTACATAACTTAAATGCTATAGGAGTT
Found at i:38465820 original size:32 final size:32
Alignment explanation
Indices: 38465784--38465847 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
38465774 ACTTTTTATC
*
38465784 TTCAAGTCTCTTCACATTAGTAACTCTTCATA
1 TTCAAGTCTCTTCACATTACTAACTCTTCATA
* *
38465816 TTCAAGTCTCTTCACATTTCTAACTTTTCATA
1 TTCAAGTCTCTTCACATTACTAACTCTTCATA
38465848 ATTTATTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.27, C:0.25, G:0.05, T:0.44
Consensus pattern (32 bp):
TTCAAGTCTCTTCACATTACTAACTCTTCATA
Found at i:38465826 original size:16 final size:16
Alignment explanation
Indices: 38465784--38465833 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 16
38465774 ACTTTTTATC
38465784 TTCAAGTCTCTTCACA
1 TTCAAGTCTCTTCACA
*
38465800 TT--AGTAACTCTTCATA
1 TTCAAGT--CTCTTCACA
38465816 TTCAAGTCTCTTCACA
1 TTCAAGTCTCTTCACA
38465832 TT
1 TT
38465834 TCTAACTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
14 3 0.11
16 22 0.79
18 3 0.11
ACGTcount: A:0.26, C:0.26, G:0.06, T:0.42
Consensus pattern (16 bp):
TTCAAGTCTCTTCACA
Found at i:38468756 original size:28 final size:28
Alignment explanation
Indices: 38468710--38468778 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 28
38468700 CAGCCCAAAT
* *
38468710 CAATAACAG-AACAATGTGGGCTTTAGCC
1 CAAT-ACAGAAACAAGGTGGGCCTTAGCC
* *
38468738 CACTATAGAAACAAGGTGGGCCTTAGCC
1 CAATACAGAAACAAGGTGGGCCTTAGCC
38468766 CAATACAGAAACA
1 CAATACAGAAACA
38468779 GTATGCAGTA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
27 3 0.09
28 31 0.91
ACGTcount: A:0.39, C:0.23, G:0.20, T:0.17
Consensus pattern (28 bp):
CAATACAGAAACAAGGTGGGCCTTAGCC
Found at i:38468980 original size:27 final size:27
Alignment explanation
Indices: 38468928--38469001 Score: 105
Period size: 27 Copynumber: 2.8 Consensus size: 27
38468918 TAATAACGCA
**
38468928 GCAAAGCTGCCAGT-ACAGTATATGTG
1 GCAAAGCCACCAGTAACAGTATATGTG
38468954 GCAAAGCCACCAGTAACAGTATATGTG
1 GCAAAGCCACCAGTAACAGTATATGTG
* *
38468981 GCAGAGCCACCTGTAACAGTA
1 GCAAAGCCACCAGTAACAGTA
38469002 CTTCCTTCAT
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
26 12 0.28
27 31 0.72
ACGTcount: A:0.34, C:0.23, G:0.24, T:0.19
Consensus pattern (27 bp):
GCAAAGCCACCAGTAACAGTATATGTG
Found at i:38469225 original size:27 final size:27
Alignment explanation
Indices: 38469195--38469260 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 27
38469185 AAGGGCAAAA
*
38469195 CGGTCATTTTACCCTATAAGGGTATTT
1 CGGTAATTTTACCCTATAAGGGTATTT
** *
38469222 CGGTAATCCTACCCTATAGGGGTATTT
1 CGGTAATTTTACCCTATAAGGGTATTT
38469249 CGGTAATTTTAC
1 CGGTAATTTTAC
38469261 AAATTGGGGG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.38
Consensus pattern (27 bp):
CGGTAATTTTACCCTATAAGGGTATTT
Found at i:38472093 original size:40 final size:40
Alignment explanation
Indices: 38471993--38472164 Score: 206
Period size: 40 Copynumber: 4.3 Consensus size: 40
38471983 GCTCCTCGTT
* * *
38471993 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* *
38472033 C-AATGCCTTCGGGACATAACCTGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
38472072 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
38472112 CAAAGGCCTTCAGGG-CTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTC-GGGACATAACCCGG-ATTTAGTAACTCGCA
38472152 CAAATGCCTTCGG
1 CAAATGCCTTCGG
38472165 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
39 36 0.31
40 74 0.63
41 7 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:38472177 original size:80 final size:79
Alignment explanation
Indices: 38471993--38472217 Score: 213
Period size: 80 Copynumber: 2.8 Consensus size: 79
38471983 GCTCCTCGTT
* * * *
38471993 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCTGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGA
38472058 TTTAATAACTCGCA
66 TTTAATAACTCGCA
* * * * *
38472072 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCAGGG-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTC-GGGACATAACCCG
* *
38472136 GAATTT-GTATCTCGCA
64 G-ATTTAATAACTCGCA
* * * * * * * *
38472152 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCA-CACAAGGCCTTCGGGACATAACCCG
38472216 GA
64 GA
38472218 CAGCATTCAA
Statistics
Matches: 118, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
79 42 0.36
80 66 0.56
81 10 0.08
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGA
TTTAATAACTCGCA
Found at i:38472226 original size:41 final size:41
Alignment explanation
Indices: 38472149--38472226 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
38472139 TTTGTATCTC
* * *
38472149 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
38472190 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
38472227 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:38479986 original size:40 final size:40
Alignment explanation
Indices: 38479886--38480057 Score: 213
Period size: 40 Copynumber: 4.3 Consensus size: 40
38479876 GCTCCTCGTT
* * *
38479886 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
38479926 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
38479965 CGAATGCCTTCGAGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
38480005 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
38480045 CAAATGCCTTCGG
1 CAAATGCCTTCGG
38480058 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 35 0.30
40 78 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:38483321 original size:29 final size:28
Alignment explanation
Indices: 38483264--38483329 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 28
38483254 TACATAGTAC
*
38483264 ATATATATGTGTGGTTTTGCTATATATA
1 ATATATATGTGTGGTTTTGCTATAGATA
*
38483292 ATATGTATGTGTAGGTTTT-CTTATAGATA
1 ATATATATGTGT-GGTTTTGC-TATAGATA
38483321 ATATATATG
1 ATATATATG
38483330 CATTTATAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 12 0.36
29 21 0.64
ACGTcount: A:0.30, C:0.03, G:0.18, T:0.48
Consensus pattern (28 bp):
ATATATATGTGTGGTTTTGCTATAGATA
Found at i:38485138 original size:20 final size:20
Alignment explanation
Indices: 38485113--38485151 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
38485103 GCATGAGATG
38485113 TAACATAGAATTTGGTTAAT
1 TAACATAGAATTTGGTTAAT
38485133 TAACATAGAATTTGGTTAA
1 TAACATAGAATTTGGTTAA
38485152 GTCATGTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.05, G:0.15, T:0.38
Consensus pattern (20 bp):
TAACATAGAATTTGGTTAAT
Found at i:38485740 original size:15 final size:15
Alignment explanation
Indices: 38485720--38485749 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
38485710 AATTTCATGC
38485720 TTCAATCACCATGTT
1 TTCAATCACCATGTT
38485735 TTCAATCACCATGTT
1 TTCAATCACCATGTT
38485750 ATCACTTAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.27, G:0.07, T:0.40
Consensus pattern (15 bp):
TTCAATCACCATGTT
Found at i:38496874 original size:15 final size:15
Alignment explanation
Indices: 38496850--38496879 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
38496840 ATTTTCATTC
*
38496850 TTCAATCACCATGTT
1 TTCAAACACCATGTT
38496865 TTCAAACACCATGTT
1 TTCAAACACCATGTT
38496880 ATCAGTTAGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.37
Consensus pattern (15 bp):
TTCAAACACCATGTT
Found at i:38519354 original size:21 final size:22
Alignment explanation
Indices: 38519319--38519369 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
38519309 GCTTTTATTC
* *
38519319 AAAACATGCGATTTAATGGCTA
1 AAAACATGCGATTTAAAGACTA
*
38519341 AAAACATG-GTTTTAAAGACTA
1 AAAACATGCGATTTAAAGACTA
38519362 AATAACAT
1 AA-AACAT
38519370 TTAAAACTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 12 0.48
22 13 0.52
ACGTcount: A:0.47, C:0.12, G:0.14, T:0.27
Consensus pattern (22 bp):
AAAACATGCGATTTAAAGACTA
Found at i:38522090 original size:34 final size:34
Alignment explanation
Indices: 38522047--38522118 Score: 144
Period size: 34 Copynumber: 2.1 Consensus size: 34
38522037 GCAGAGATAC
38522047 TTACCTCATTCACTCGTTTAAATGTGGTGTCTTG
1 TTACCTCATTCACTCGTTTAAATGTGGTGTCTTG
38522081 TTACCTCATTCACTCGTTTAAATGTGGTGTCTTG
1 TTACCTCATTCACTCGTTTAAATGTGGTGTCTTG
38522115 TTAC
1 TTAC
38522119 AAGCTAAATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.18, C:0.21, G:0.17, T:0.44
Consensus pattern (34 bp):
TTACCTCATTCACTCGTTTAAATGTGGTGTCTTG
Found at i:38531374 original size:27 final size:27
Alignment explanation
Indices: 38531309--38531379 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 27
38531299 TCGCTCGAGG
*
38531309 TGACTGTTATACCCCTATAGGATAAAA
1 TGACTGTTATACCCCTACAGGATAAAA
* ** * *
38531336 TGACCGAAATACCCCTACAGGGTAGAA
1 TGACTGTTATACCCCTACAGGATAAAA
38531363 TGACTGTTATACCCCTA
1 TGACTGTTATACCCCTA
38531380 GGAATTGAAA
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (27 bp):
TGACTGTTATACCCCTACAGGATAAAA
Found at i:38535786 original size:122 final size:121
Alignment explanation
Indices: 38535569--38535809 Score: 299
Period size: 122 Copynumber: 2.0 Consensus size: 121
38535559 CCTATATTTA
** * * * ** *
38535569 TAGAACTCTAAGGGTTTCATTTGGTATTGATAGAACCCATCAGAGTATTGGTAGAAGTGTAGGGG
1 TAGAACTCTAAGGGTTTCAACTGGTATCGATAAAACCCAGCAGAGTATTAATAAAAGTGTAGGGG
*
38535634 AGGCTGAACTTTGGCTACAATTTTGACTTGTTTCAGTAGAAGTCC-TCAAGGTATTAG
66 A-GCTGAACTTTGGCAACAATTTTGACTTGTTTCAGTAGAAG-CCTTCAAGGTATTAG
*
38535691 TAGAACTCT-AGAGGTTTCAACTGGTATCGGTAAAACCCAGCAGAGTATTAATAAAAGTGTAGAA
1 TAGAACTCTAAG-GGTTTCAACTGGTATCGATAAAACCCAGCAGAGTATTAATAAAAGTGTAG--
* * *
38535755 GGGA-CTGAACTTTGGCAACTATTTTGGCTTGTTTCGGTAGAAGCCTTCAAGGTAT
63 GGGAGCTGAACTTTGGCAACAATTTTGACTTGTTTCAGTAGAAGCCTTCAAGGTAT
38535810 CGATATAACT
Statistics
Matches: 102, Mismatches: 13, Indels: 8
0.83 0.11 0.07
Matches are distributed among these distances:
121 4 0.04
122 94 0.92
124 4 0.04
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (121 bp):
TAGAACTCTAAGGGTTTCAACTGGTATCGATAAAACCCAGCAGAGTATTAATAAAAGTGTAGGGG
AGCTGAACTTTGGCAACAATTTTGACTTGTTTCAGTAGAAGCCTTCAAGGTATTAG
Found at i:38537107 original size:16 final size:16
Alignment explanation
Indices: 38537086--38537118 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
38537076 TCTTCGATCG
*
38537086 ACAACTGTTCTGAACA
1 ACAACTATTCTGAACA
38537102 ACAACTATTCTGAACA
1 ACAACTATTCTGAACA
38537118 A
1 A
38537119 GAGTTGTAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.42, C:0.24, G:0.09, T:0.24
Consensus pattern (16 bp):
ACAACTATTCTGAACA
Found at i:38541600 original size:15 final size:15
Alignment explanation
Indices: 38541580--38541608 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
38541570 GTCACATCCT
38541580 AAAAAATGGGTTAGC
1 AAAAAATGGGTTAGC
38541595 AAAAAATGGGTTAG
1 AAAAAATGGGTTAG
38541609 TGAAACCAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.03, G:0.28, T:0.21
Consensus pattern (15 bp):
AAAAAATGGGTTAGC
Found at i:38544039 original size:17 final size:16
Alignment explanation
Indices: 38544019--38544060 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
38544009 ACAGACTTAT
*
38544019 ATTTTTTTTTACTCAAA
1 ATTTTTTTTCAC-CAAA
*
38544036 ATTTTTTGTCACCAAA
1 ATTTTTTTTCACCAAA
38544052 ATTTTTTTT
1 ATTTTTTTT
38544061 ATAGATTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 12 0.55
17 10 0.45
ACGTcount: A:0.26, C:0.12, G:0.02, T:0.60
Consensus pattern (16 bp):
ATTTTTTTTCACCAAA
Found at i:38544928 original size:32 final size:32
Alignment explanation
Indices: 38544892--38544965 Score: 105
Period size: 32 Copynumber: 2.3 Consensus size: 32
38544882 AATAGTCTTT
*
38544892 GGTGTGAACAT-ATGGACTTGAACGGTCCCTTG
1 GGTGTGAACATCA-GGACTTGAACGGTCCATTG
* *
38544924 GGTGTGAACATCAGGAGTTGGACGGTCCATTG
1 GGTGTGAACATCAGGACTTGAACGGTCCATTG
38544956 GGTGTGAACA
1 GGTGTGAACA
38544966 AAGGTAGCTG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
32 37 0.97
33 1 0.03
ACGTcount: A:0.23, C:0.16, G:0.35, T:0.26
Consensus pattern (32 bp):
GGTGTGAACATCAGGACTTGAACGGTCCATTG
Found at i:38545849 original size:40 final size:40
Alignment explanation
Indices: 38545805--38545933 Score: 142
Period size: 40 Copynumber: 3.2 Consensus size: 40
38545795 GGGGCACGAA
* * * *
38545805 AGTGCGATCAGGGGTACCAAAGTATAATCAATGGCATGAG
1 AGTGCAATCAGGGGTACCGAAGTAAAATCAGTGGCATGAG
*
38545845 AGTGCAATCAGGGGT-CCGAAGTACAAA-CAGGGGAACAT-A-
1 AGTGCAATCAGGGGTACCGAAGTA-AAATCAGTGG--CATGAG
38545884 AGTGCAATCAGGGGTACCGAAGTACAAAT-AGTGGCATGAG
1 AGTGCAATCAGGGGTACCGAAGTA-AAATCAGTGGCATGAG
38545924 AGTGCAATCA
1 AGTGCAATCA
38545934 TTCAATAATT
Statistics
Matches: 76, Mismatches: 6, Indels: 14
0.79 0.06 0.15
Matches are distributed among these distances:
38 3 0.04
39 27 0.36
40 43 0.57
41 3 0.04
ACGTcount: A:0.36, C:0.16, G:0.30, T:0.17
Consensus pattern (40 bp):
AGTGCAATCAGGGGTACCGAAGTAAAATCAGTGGCATGAG
Found at i:38545906 original size:20 final size:20
Alignment explanation
Indices: 38545845--38545906 Score: 72
Period size: 20 Copynumber: 3.1 Consensus size: 20
38545835 ATGGCATGAG
38545845 AGTGCAATCAGGGGT-CCGA
1 AGTGCAATCAGGGGTACCGA
* * * **
38545864 AGTACAAACAGGGGAACATA
1 AGTGCAATCAGGGGTACCGA
38545884 AGTGCAATCAGGGGTACCGA
1 AGTGCAATCAGGGGTACCGA
38545904 AGT
1 AGT
38545907 ACAAATAGTG
Statistics
Matches: 32, Mismatches: 10, Indels: 1
0.74 0.23 0.02
Matches are distributed among these distances:
19 12 0.38
20 20 0.62
ACGTcount: A:0.35, C:0.18, G:0.32, T:0.15
Consensus pattern (20 bp):
AGTGCAATCAGGGGTACCGA
Found at i:38555713 original size:21 final size:21
Alignment explanation
Indices: 38555689--38555792 Score: 163
Period size: 21 Copynumber: 5.0 Consensus size: 21
38555679 CGAGCATGCC
*
38555689 AACAAAAGCTCATAAGAGCTG
1 AACAGAAGCTCATAAGAGCTG
*
38555710 AACAGAAGCTCAAAAGAGCTG
1 AACAGAAGCTCATAAGAGCTG
38555731 AACAGAAGCTCATAAGAGCTG
1 AACAGAAGCTCATAAGAGCTG
*
38555752 AACAGAAGCTCATAATAGCTG
1 AACAGAAGCTCATAAGAGCTG
* *
38555773 AACAAAAGCTCTTAAGAGCT
1 AACAGAAGCTCATAAGAGCT
38555793 AATCCACCCA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 76 1.00
ACGTcount: A:0.45, C:0.19, G:0.20, T:0.15
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTG
Found at i:38558158 original size:48 final size:46
Alignment explanation
Indices: 38558105--38558248 Score: 173
Period size: 46 Copynumber: 3.1 Consensus size: 46
38558095 ATTTGAGTTA
* * *
38558105 AACCTACATGAATGATGAATCATATTGTCTGGTCACCCGTTAAGGTTG
1 AACCTACATGAAT-ATG-ATAATAGTGTCTGTTCACCCGTTAAGGTTG
* * *
38558153 AACCTACATGAATCTGATAATAGTGTCTGTTCACCCATTAAAGTTG
1 AACCTACATGAATATGATAATAGTGTCTGTTCACCCGTTAAGGTTG
* * *
38558199 AACCTACACGAATCA-GATAATAGTGCCTGTTCACCCGTTAGGGTTG
1 AACCTACATGAAT-ATGATAATAGTGTCTGTTCACCCGTTAAGGTTG
38558245 AACC
1 AACC
38558249 CAAACAACAA
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
46 68 0.82
47 2 0.02
48 13 0.16
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.29
Consensus pattern (46 bp):
AACCTACATGAATATGATAATAGTGTCTGTTCACCCGTTAAGGTTG
Found at i:38558199 original size:46 final size:46
Alignment explanation
Indices: 38558076--38558248 Score: 168
Period size: 46 Copynumber: 3.7 Consensus size: 46
38558066 CAGGTGAAAG
* ** * *
38558076 TAATAGTGTCTGGTT-ACCTATTTGAGTTAAACCTACATGAATGATGAA
1 TAATAGTGTCT-GTTCACCCATTAAAGTTGAACCTACATGAAT-CTG-A
* * * * *
38558124 TCATATTGTCTGGTCACCCGTTAAGGTTGAACCTACATGAATCTGA
1 TAATAGTGTCTGTTCACCCATTAAAGTTGAACCTACATGAATCTGA
* *
38558170 TAATAGTGTCTGTTCACCCATTAAAGTTGAACCTACACGAATCAGA
1 TAATAGTGTCTGTTCACCCATTAAAGTTGAACCTACATGAATCTGA
* * **
38558216 TAATAGTGCCTGTTCACCCGTTAGGGTTGAACC
1 TAATAGTGTCTGTTCACCCATTAAAGTTGAACC
38558249 CAAACAACAA
Statistics
Matches: 103, Mismatches: 21, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
46 69 0.67
47 4 0.04
48 30 0.29
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (46 bp):
TAATAGTGTCTGTTCACCCATTAAAGTTGAACCTACATGAATCTGA
Found at i:38559834 original size:23 final size:23
Alignment explanation
Indices: 38559808--38559855 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
38559798 CAGCAATAAC
* *
38559808 ATAGTTTGATCCTCGTCAATGAT
1 ATAGCTTGATCCTCATCAATGAT
*
38559831 ATAGCTTGATCCTCATCAGTGAT
1 ATAGCTTGATCCTCATCAATGAT
38559854 AT
1 AT
38559856 CTACATCCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.38
Consensus pattern (23 bp):
ATAGCTTGATCCTCATCAATGAT
Found at i:38569188 original size:12 final size:12
Alignment explanation
Indices: 38569173--38569199 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
38569163 TTCTAAATGT
38569173 TAATTCTAAGAC
1 TAATTCTAAGAC
38569185 TAATTCTAAGAC
1 TAATTCTAAGAC
38569197 TAA
1 TAA
38569200 GCTTATTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.44, C:0.15, G:0.07, T:0.33
Consensus pattern (12 bp):
TAATTCTAAGAC
Found at i:38571710 original size:23 final size:23
Alignment explanation
Indices: 38571680--38571735 Score: 87
Period size: 23 Copynumber: 2.5 Consensus size: 23
38571670 GGACCCAAGA
*
38571680 TGAATTAATTCTGAATCCGTTTT
1 TGAATTAATTCTGAATCCGTTTG
*
38571703 TGAATTAATTTTGAATCCGTTTG
1 TGAATTAATTCTGAATCCGTTTG
38571726 TGAA-TAATTC
1 TGAATTAATTC
38571736 GCTTGTGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 5 0.17
23 25 0.83
ACGTcount: A:0.29, C:0.11, G:0.14, T:0.46
Consensus pattern (23 bp):
TGAATTAATTCTGAATCCGTTTG
Found at i:38572562 original size:19 final size:19
Alignment explanation
Indices: 38572540--38572579 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
38572530 ATTAATTTTG
* *
38572540 ATCAAGTAAATTTAAATTA
1 ATCAAATAAATTAAAATTA
*
38572559 ATCAAATTAATTAAAATTA
1 ATCAAATAAATTAAAATTA
38572578 AT
1 AT
38572580 ATGATATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.38
Consensus pattern (19 bp):
ATCAAATAAATTAAAATTA
Found at i:38578661 original size:18 final size:19
Alignment explanation
Indices: 38578628--38578669 Score: 68
Period size: 18 Copynumber: 2.2 Consensus size: 19
38578618 ACTATTATGA
38578628 CTTTTGTATTTTTTTTTTAT
1 CTTTTGTA-TTTTTTTTTAT
38578648 CTTTTGTA-TTTTTTTTAT
1 CTTTTGTATTTTTTTTTAT
38578666 CTTT
1 CTTT
38578670 CATATTTTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 14 0.64
20 8 0.36
ACGTcount: A:0.10, C:0.07, G:0.05, T:0.79
Consensus pattern (19 bp):
CTTTTGTATTTTTTTTTAT
Found at i:38578675 original size:18 final size:18
Alignment explanation
Indices: 38578638--38578677 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
38578628 CTTTTGTATT
**
38578638 TTTTTTTTATCTTTTGTA
1 TTTTTTTTATCTTTCATA
38578656 TTTTTTTTATCTTTCATA
1 TTTTTTTTATCTTTCATA
38578674 TTTT
1 TTTT
38578678 CCATGCATAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.12, C:0.07, G:0.03, T:0.78
Consensus pattern (18 bp):
TTTTTTTTATCTTTCATA
Found at i:38580332 original size:37 final size:36
Alignment explanation
Indices: 38580281--38580388 Score: 100
Period size: 37 Copynumber: 3.0 Consensus size: 36
38580271 ATTTCAAAGA
*
38580281 TAATATTATTTTAATAGTTTAATATTAAATTTAATT
1 TAATATTATCTTAATAGTTTAATATTAAATTTAATT
*
38580317 TAATACTTATCTTAATAGTATT-TTATT-AATTTAATAT
1 TAATA-TTATCTTAATAGT-TTAATATTAAATTTAAT-T
*
38580354 TAAAGTGATTATCTTAATA--TTAA-ATTTAATTTAAT
1 T-AA-T-ATTATCTTAATAGTTTAATATTAAATTTAAT
38580389 ATTTATCTAC
Statistics
Matches: 61, Mismatches: 3, Indels: 15
0.77 0.04 0.19
Matches are distributed among these distances:
36 18 0.30
37 26 0.43
38 4 0.07
39 12 0.20
40 1 0.02
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.53
Consensus pattern (36 bp):
TAATATTATCTTAATAGTTTAATATTAAATTTAATT
Found at i:38580376 original size:68 final size:67
Alignment explanation
Indices: 38580298--38580495 Score: 214
Period size: 68 Copynumber: 3.0 Consensus size: 67
38580288 ATTTTAATAG
* *
38580298 TTTAATATTAAATTTAATTTAATACTTATCTTAATAGTATTTTATTAATTTAATATTAAAGTGAT
1 TTTAATATTAAATTTAATTTAATATTTATCTTAATAGTATTATATTAATTTAATATTAAAGTGAT
38580363 TA
66 TA
* *
38580365 TCTTAATATTAAATTTAATTTAATATTTATC-TACA-AG-ATAAATATTATATTT--T-TTTAA-
1 T-TTAATATTAAATTTAATTTAATATTTATCTTA-ATAGTAT-TATATTA-ATTTAATATTAAAG
**
38580423 T-AAGA
62 TGATTA
* * *
38580428 TTTAATATTAAATTTAGTCTAATATTTATCTTAATAAATATTATATTAATTTAATATTAAAGTGA
1 TTTAATATTAAATTTAATTTAATATTTATCTTAAT-AGTATTATATTAATTTAATATTAAAGTGA
38580493 TTA
65 TTA
38580496 AGTTTAATTA
Statistics
Matches: 105, Mismatches: 13, Indels: 25
0.73 0.09 0.17
Matches are distributed among these distances:
62 28 0.27
63 9 0.09
64 8 0.08
65 7 0.07
66 7 0.07
67 11 0.10
68 35 0.33
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.51
Consensus pattern (67 bp):
TTTAATATTAAATTTAATTTAATATTTATCTTAATAGTATTATATTAATTTAATATTAAAGTGAT
TA
Found at i:38580436 original size:62 final size:59
Alignment explanation
Indices: 38580367--38580483 Score: 162
Period size: 62 Copynumber: 1.9 Consensus size: 59
38580357 AGTGATTATC
* **
38580367 TTAATATTAAATTTAATTTAATATTTATCTACAAGATAAATATTATATTTTTTTAATAAGAT
1 TTAATATTAAATTTAATCTAATATTTATCT--AA-ATAAATATTATATTAATTTAATAAGAT
* *
38580429 TTAATATTAAATTTAGTCTAATATTTATCTTAATAAATATTATATTAATTTAATA
1 TTAATATTAAATTTAATCTAATATTTATCTAAATAAATATTATATTAATTTAATA
38580484 TTAAAGTGAT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
59 21 0.42
60 1 0.02
62 28 0.56
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (59 bp):
TTAATATTAAATTTAATCTAATATTTATCTAAATAAATATTATATTAATTTAATAAGAT
Found at i:38582902 original size:20 final size:19
Alignment explanation
Indices: 38582862--38582899 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
38582852 AGTTTAATTA
38582862 AACTTAATTAATCAAGGTT
1 AACTTAATTAATCAAGGTT
38582881 AACTTAAATTAATC-AGGTT
1 AACTT-AATTAATCAAGGTT
38582900 TAATTATGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.37
Consensus pattern (19 bp):
AACTTAATTAATCAAGGTT
Found at i:38585148 original size:30 final size:30
Alignment explanation
Indices: 38585114--38585209 Score: 88
Period size: 30 Copynumber: 3.2 Consensus size: 30
38585104 ATTTATCTCG
38585114 ATATTAATATGAGATATTAAATTTAATTCA
1 ATATTAATATGAGATATTAAATTTAATTCA
* * * **
38585144 ATATTTATCT-AGAAAGGTT-TTTATTAATTCA
1 ATATTAATATGAGATA--TTAAAT-TTAATTCA
* *
38585175 ATATTAATTTGAGATATTAAATTTAATTTA
1 ATATTAATATGAGATATTAAATTTAATTCA
38585205 ATATT
1 ATATT
38585210 TATCTAGATA
Statistics
Matches: 50, Mismatches: 11, Indels: 10
0.70 0.15 0.14
Matches are distributed among these distances:
29 4 0.08
30 23 0.46
31 19 0.38
32 4 0.08
ACGTcount: A:0.42, C:0.03, G:0.07, T:0.48
Consensus pattern (30 bp):
ATATTAATATGAGATATTAAATTTAATTCA
Found at i:38585227 original size:61 final size:60
Alignment explanation
Indices: 38585114--38585231 Score: 184
Period size: 61 Copynumber: 1.9 Consensus size: 60
38585104 ATTTATCTCG
38585114 ATATTAATATGAGATATTAAATTTAATTCAATATTTATCTAGAAAGGTTTTTATTAATTCA
1 ATATTAATATGAGATATTAAATTTAATTCAATATTTATCTAGAAA-GTTTTTATTAATTCA
* *
38585175 ATATTAATTTGAGATATTAAATTTAATTTAATATTTATCTAGATAA-TATTTTATTAA
1 ATATTAATATGAGATATTAAATTTAATTCAATATTTATCTAGA-AAGT-TTTTATTAA
38585232 ATTAGTATAA
Statistics
Matches: 53, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
60 1 0.02
61 50 0.94
62 2 0.04
ACGTcount: A:0.42, C:0.03, G:0.07, T:0.48
Consensus pattern (60 bp):
ATATTAATATGAGATATTAAATTTAATTCAATATTTATCTAGAAAGTTTTTATTAATTCA
Found at i:38585396 original size:26 final size:26
Alignment explanation
Indices: 38585344--38585394 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
38585334 AGTTGTAGAG
*
38585344 AGAAGATTCTCTACATAAATTATTTT
1 AGAAAATTCTCTACATAAATTATTTT
* *
38585370 AGAAAATT-TCTAGATATATTATTTT
1 AGAAAATTCTCTACATAAATTATTTT
38585395 TATTTACAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.39, C:0.08, G:0.08, T:0.45
Consensus pattern (26 bp):
AGAAAATTCTCTACATAAATTATTTT
Found at i:38587559 original size:32 final size:32
Alignment explanation
Indices: 38587516--38587601 Score: 118
Period size: 32 Copynumber: 2.7 Consensus size: 32
38587506 AAGTCCAGAT
* *
38587516 TAGCCTTGCCCGTGTAGCCCATACGCCCAATC
1 TAGCCTAGCCCGTGTGGCCCATACGCCCAATC
* * *
38587548 TGGCCTAGCCCGTGTGGCCCACACGCCTAATC
1 TAGCCTAGCCCGTGTGGCCCATACGCCCAATC
*
38587580 TAGCCTAGCTCGTGTGGCCCAT
1 TAGCCTAGCCCGTGTGGCCCAT
38587602 TACATAGCCG
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 46 1.00
ACGTcount: A:0.16, C:0.38, G:0.23, T:0.22
Consensus pattern (32 bp):
TAGCCTAGCCCGTGTGGCCCATACGCCCAATC
Done.