Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53248092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1300000 characters in sequence are not A, C, G, or T
File 123 of 175
Found at i:38591884 original size:45 final size:45
Alignment explanation
Indices: 38591809--38591984 Score: 230
Period size: 45 Copynumber: 3.9 Consensus size: 45
38591799 TACACGGTTG
* * * * *
38591809 ATCAGCACATAGC-ACCACCCTTATAGTCAATGATACTCGGTGGA
1 ATCAGCACACAACAACCACCTTTATAATCAATGATACCCGGTGGA
* * * * * *
38591853 ATTAGCACATAGCAACCACCTTCATAATCAAT-AGTACCCGATAGA
1 ATCAGCACACAACAACCACCTTTATAATCAATGA-TACCCGGTGGA
38591898 ATCAGCACACAACAACCACCTTTATAATCAATGATACCCGGTGGA
1 ATCAGCACACAACAACCACCTTTATAATCAATGATACCCGGTGGA
38591943 ATCAGCACACAACAACCACCTTTATAATCAATGATACCCGGT
1 ATCAGCACACAACAACCACCTTTATAATCAATGATACCCGGT
38591985 ATACGTAGTA
Statistics
Matches: 116, Mismatches: 13, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
44 13 0.11
45 102 0.88
46 1 0.01
ACGTcount: A:0.37, C:0.28, G:0.13, T:0.22
Consensus pattern (45 bp):
ATCAGCACACAACAACCACCTTTATAATCAATGATACCCGGTGGA
Found at i:38593454 original size:28 final size:28
Alignment explanation
Indices: 38593414--38593471 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
38593404 GAATAAGTAT
38593414 GTGCGGTTTCTGCAAGCGTGGCAGGTCA
1 GTGCGGTTTCTGCAAGCGTGGCAGGTCA
38593442 GTGCGGTTTCTGCAAGCGTGGCAGGTCA
1 GTGCGGTTTCTGCAAGCGTGGCAGGTCA
38593470 GT
1 GT
38593472 TGTAATATCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.14, C:0.21, G:0.40, T:0.26
Consensus pattern (28 bp):
GTGCGGTTTCTGCAAGCGTGGCAGGTCA
Found at i:38593980 original size:20 final size:20
Alignment explanation
Indices: 38593955--38593993 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
38593945 CATAAGTTTT
38593955 TAATTTCATT-CAATTTAGTC
1 TAATTT-ATTACAATTTAGTC
38593975 TAATTTATTACAATTTAGT
1 TAATTTATTACAATTTAGT
38593994 TATTGACCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 3 0.17
20 15 0.83
ACGTcount: A:0.33, C:0.10, G:0.05, T:0.51
Consensus pattern (20 bp):
TAATTTATTACAATTTAGTC
Found at i:38596368 original size:36 final size:36
Alignment explanation
Indices: 38596328--38596408 Score: 92
Period size: 36 Copynumber: 2.2 Consensus size: 36
38596318 AATTTCAAGG
* *
38596328 TGGCTTTGTGGA-GAGATGTTGTTACAAATGAAATAT
1 TGGCTTTGTGGACGA-ATGTTATTACAAATGAAATAA
** **
38596364 TGGCTTTACGGACGAATGTTATTTGAAATGAAATAA
1 TGGCTTTGTGGACGAATGTTATTACAAATGAAATAA
38596400 TGGCTTTGT
1 TGGCTTTGT
38596409 AGAGGTATGA
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
36 34 0.94
37 2 0.06
ACGTcount: A:0.30, C:0.07, G:0.26, T:0.37
Consensus pattern (36 bp):
TGGCTTTGTGGACGAATGTTATTACAAATGAAATAA
Found at i:38596724 original size:18 final size:18
Alignment explanation
Indices: 38596703--38596754 Score: 61
Period size: 17 Copynumber: 2.9 Consensus size: 18
38596693 TTAATGTGCG
*
38596703 AGCTATGTCAAATGTGTA
1 AGCTAAGTCAAATGTGTA
* *
38596721 AGCTAAGT-TAATGTGTG
1 AGCTAAGTCAAATGTGTA
*
38596738 AGCTAAATCAAATGTGT
1 AGCTAAGTCAAATGTGT
38596755 GAGTTGTGGA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
17 14 0.50
18 14 0.50
ACGTcount: A:0.35, C:0.10, G:0.23, T:0.33
Consensus pattern (18 bp):
AGCTAAGTCAAATGTGTA
Found at i:38596755 original size:18 final size:18
Alignment explanation
Indices: 38596695--38596757 Score: 74
Period size: 18 Copynumber: 3.6 Consensus size: 18
38596685 TAAATAAGTT
* *
38596695 AATGTGCGAGCTATGTCA
1 AATGTGTGAGCTAAGTCA
* *
38596713 AATGTGTAAGCTAAGT-T
1 AATGTGTGAGCTAAGTCA
*
38596730 AATGTGTGAGCTAAATCA
1 AATGTGTGAGCTAAGTCA
38596748 AATGTGTGAG
1 AATGTGTGAG
38596758 TTGTGGAAAT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
17 14 0.38
18 23 0.62
ACGTcount: A:0.33, C:0.10, G:0.27, T:0.30
Consensus pattern (18 bp):
AATGTGTGAGCTAAGTCA
Found at i:38596786 original size:17 final size:17
Alignment explanation
Indices: 38596747--38596780 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
38596737 GAGCTAAATC
*
38596747 AAATGTGTGAGTTGTGG
1 AAATGTGTGAGTAGTGG
38596764 AAATGTGTGAGTAGTGG
1 AAATGTGTGAGTAGTGG
38596781 CGATGTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.41, T:0.32
Consensus pattern (17 bp):
AAATGTGTGAGTAGTGG
Found at i:38608461 original size:27 final size:27
Alignment explanation
Indices: 38608391--38608463 Score: 87
Period size: 26 Copynumber: 2.8 Consensus size: 27
38608381 TCTCATCCCT
* *
38608391 ATTTTACCCC-CAGTAAAATTTTAACG
1 ATTTTACCCCTGAGTAAATTTTTAACG
* *
38608417 ATTTTACCCTTG-GTAAATTTTTGACG
1 ATTTTACCCCTGAGTAAATTTTTAACG
*
38608443 ATTTTACCCCTGATTAAATTT
1 ATTTTACCCCTGAGTAAATTT
38608464 CGAGAAAATA
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
26 32 0.82
27 7 0.18
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.42
Consensus pattern (27 bp):
ATTTTACCCCTGAGTAAATTTTTAACG
Found at i:38608647 original size:12 final size:12
Alignment explanation
Indices: 38608612--38608653 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
38608602 TGCAAATGGA
38608612 TCATTTCCATTT
1 TCATTTCCATTT
*
38608624 TCATTAT-AATTT
1 TCATT-TCCATTT
38608636 TCATTTCCATTT
1 TCATTTCCATTT
*
38608648 CCATTT
1 TCATTT
38608654 TTGGAACCTA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
11 1 0.04
12 23 0.92
13 1 0.04
ACGTcount: A:0.21, C:0.21, G:0.00, T:0.57
Consensus pattern (12 bp):
TCATTTCCATTT
Found at i:38614192 original size:41 final size:41
Alignment explanation
Indices: 38614135--38614216 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
38614125 CACGAAATCA
38614135 GTTGGTCCACGAGAGGAAGTTCATATCAGGAAGGGATCTAT
1 GTTGGTCCACGAGAGGAAGTTCATATCAGGAAGGGATCTAT
38614176 GTTGGTCCACGAGAGGAAGTTCATATCAGGAAGGGATCTAT
1 GTTGGTCCACGAGAGGAAGTTCATATCAGGAAGGGATCTAT
38614217 CTCATAAAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.29, C:0.15, G:0.32, T:0.24
Consensus pattern (41 bp):
GTTGGTCCACGAGAGGAAGTTCATATCAGGAAGGGATCTAT
Found at i:38615460 original size:34 final size:32
Alignment explanation
Indices: 38615422--38615484 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 32
38615412 TTATTGGTTA
38615422 ATTAAAATATTTAAATAA-ATTTATAAAAACAGAT
1 ATTAAAA-ATTTAAATAATA-TTA-AAAAACAGAT
*
38615456 ATTAAAAATTTTAATAATATTAAAAAACA
1 ATTAAAAATTTAAATAATATTAAAAAACA
38615485 TATAAAAAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
32 7 0.26
33 12 0.44
34 8 0.30
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.35
Consensus pattern (32 bp):
ATTAAAAATTTAAATAATATTAAAAAACAGAT
Found at i:38615503 original size:31 final size:31
Alignment explanation
Indices: 38615445--38615504 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
38615435 AATAAATTTA
* * *
38615445 TAAAAACAGATATTAAAAATTTTAATAATAT
1 TAAAAACACATATAAAAAATTTCAATAATAT
38615476 TAAAAA-ACATATAAAAAGATTTCAATAAT
1 TAAAAACACATATAAAAA-ATTTCAATAAT
38615505 GTTTCTTTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 9 0.36
31 16 0.64
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.32
Consensus pattern (31 bp):
TAAAAACACATATAAAAAATTTCAATAATAT
Found at i:38615716 original size:14 final size:14
Alignment explanation
Indices: 38615697--38615725 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
38615687 TACACATTAA
38615697 ATCTAAATTTAAGT
1 ATCTAAATTTAAGT
38615711 ATCTAAATTTAAGT
1 ATCTAAATTTAAGT
38615725 A
1 A
38615726 ACAAATCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.41
Consensus pattern (14 bp):
ATCTAAATTTAAGT
Found at i:38616414 original size:19 final size:18
Alignment explanation
Indices: 38616370--38616414 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
38616360 GTAATTATTT
38616370 TTAATTTT-AAAAATTAA
1 TTAATTTTAAAAAATTAA
38616387 --AATTATTAAAAAATTAA
1 TTAATT-TTAAAAAATTAA
38616404 TTAATTGTTAA
1 TTAATT-TTAA
38616415 TATATACGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
15 4 0.17
16 2 0.09
17 9 0.39
19 8 0.35
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (18 bp):
TTAATTTTAAAAAATTAA
Found at i:38630891 original size:91 final size:90
Alignment explanation
Indices: 38630733--38630897 Score: 233
Period size: 91 Copynumber: 1.8 Consensus size: 90
38630723 ACACTCCAGT
* * * *
38630733 TTGTGGATAAACCACCAGTGTTGCAGGTTAATACGCTGCCAGCAATTGTGAATACACAACGGATT
1 TTGTGGATAAACCACAAGTGTTGCAAGTTAATACGCTGCCAACAATTGTGAATACACAACGAATT
*
38630798 TGCAGATAATAGTTGCCAGTATAAG
66 TGCAAATAATAGTTGCCAGTATAAG
* * *
38630823 TTGTGGATAAACCACAAGTGTTTGCAAGTTAATATGCTGCCAATAGTTGTGAATACACAAC-AAC
1 TTGTGGATAAACCACAAGTG-TTGCAAGTTAATACGCTGCCAACAATTGTGAATACACAACGAA-
38630887 TTTGCAAATAA
64 TTTGCAAATAA
38630898 AAACTGCAAG
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
90 20 0.31
91 45 0.69
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.28
Consensus pattern (90 bp):
TTGTGGATAAACCACAAGTGTTGCAAGTTAATACGCTGCCAACAATTGTGAATACACAACGAATT
TGCAAATAATAGTTGCCAGTATAAG
Found at i:38637491 original size:27 final size:26
Alignment explanation
Indices: 38637423--38637497 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 26
38637413 AAAAATAAAA
38637423 ATTTACCAAAATATTATAAAATTTTTT
1 ATTTACCAAAATA-TATAAAATTTTTT
38637450 ATTTACCAAAATATA-AATAATTTTTTT
1 ATTTACCAAAATATATAA-AA-TTTTTT
38637477 ATTTACCAAAATATATCAAAA
1 ATTTACCAAAATATAT-AAAA
38637498 ACAAAAAACA
Statistics
Matches: 44, Mismatches: 0, Indels: 7
0.86 0.00 0.14
Matches are distributed among these distances:
25 2 0.05
26 4 0.09
27 34 0.77
28 2 0.05
29 2 0.05
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.43
Consensus pattern (26 bp):
ATTTACCAAAATATATAAAATTTTTT
Found at i:38637633 original size:4 final size:4
Alignment explanation
Indices: 38637624--38637892 Score: 165
Period size: 4 Copynumber: 66.0 Consensus size: 4
38637614 GAAGGAGAGG
*
38637624 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA TGAGAG GAAA GAAAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA -GA-AA GAAA G-AAA
* *
38637675 GGAAA G-GA GAAGA GAAA AAAA GAAA GAAA G-AA G-AA G-AA GAAAA GGAAAA
1 -GAAA GAAA GAA-A GAAA GAAA GAAA GAAA GAAA GAAA GAAA G-AAA -G-AAA
* *
38637724 GAGAA GAAA -AAA GAAA G-AA -AAA GAAG GAAA GAAAA GGAAA G-GA GAAGA
1 GA-AA GAAA GAAA GAAA GAAA GAAA GAAA GAAA G-AAA -GAAA GAAA GAA-A
*
38637772 GAAA AAAA GAAA GAAA G-AA G-AA G-AA GAAAA GGAAAA GAGAA GAAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA G-AAA -G-AAA GA-AA GAAA
* *
38637817 -AAA GAAA GAAA GAAG GAAA GAAAA GGAAAA GAGAA GAAA -AAA GAGA
1 GAAA GAAA GAAA GAAA GAAA G-AAA -G-AAA GA-AA GAAA GAAA GAAA
38637863 G-AA GAAA -AAA GAAA GAAA -AAA GGAAA GAAA
1 GAAA GAAA GAAA GAAA GAAA GAAA -GAAA GAAA
38637893 AGGAAAGGAG
Statistics
Matches: 219, Mismatches: 16, Indels: 60
0.74 0.05 0.20
Matches are distributed among these distances:
3 43 0.20
4 109 0.50
5 49 0.22
6 18 0.08
ACGTcount: A:0.71, C:0.00, G:0.28, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:38637691 original size:48 final size:46
Alignment explanation
Indices: 38637635--38637936 Score: 302
Period size: 43 Copynumber: 6.8 Consensus size: 46
38637625 AAAGAAAGAA
38637635 AGAA-AGAAAGAAAGAAAGAAAGAAATGAGAGGAAAGAAAAGGAAAGG
1 AGAAGAGAAAGAAAGAAAGAAAGAAA-GA-AGGAAAGAAAAGGAAAGG
* *
38637682 AGAAGAGAAAAAAAGAAAGAAAG-AAGAA-G-AAGAAAAGGAAAAG
1 AGAAGAGAAAGAAAGAAAGAAAGAAAGAAGGAAAGAAAAGGAAAGG
38637725 AG-A-AGAAA-AAAGAAAG-AA-AAAGAAGGAAAGAAAAGGAAAGG
1 AGAAGAGAAAGAAAGAAAGAAAGAAAGAAGGAAAGAAAAGGAAAGG
* *
38637766 AGAAGAGAAAAAAAGAAAGAAAG-AAGAA-G-AAGAAAAGGAAAAG
1 AGAAGAGAAAGAAAGAAAGAAAGAAAGAAGGAAAGAAAAGGAAAGG
* * *
38637809 AGAAGAAAAAAGAAAGAAAGAAGGAAAGAAAAGGAAAAGAGAA-GAAA--
1 AGAAG-AGAAAGAAAGAAAGAAAGAAAG--AAGG-AAAGAAAAGGAAAGG
*
38637856 A-AAGAGAGAAGAAA-AAAGAAAGAAAAAAGGAAAGAAAAGGAAAGG
1 AGAAGAGA-AAGAAAGAAAGAAAGAAAGAAGGAAAGAAAAGGAAAGG
** *
38637901 AGAAGAGAAA-AAA-AAAG-AAGAGGGAAGGAAGGAAAA
1 AGAAGAGAAAGAAAGAAAGAAAGAAAGAAGGAAAGAAAA
38637937 AAAAAAGGTA
Statistics
Matches: 218, Mismatches: 16, Indels: 46
0.78 0.06 0.16
Matches are distributed among these distances:
39 7 0.03
40 9 0.04
41 20 0.09
42 9 0.04
43 61 0.28
44 32 0.15
45 26 0.12
46 17 0.08
47 9 0.04
48 18 0.08
49 4 0.02
50 6 0.03
ACGTcount: A:0.70, C:0.00, G:0.29, T:0.00
Consensus pattern (46 bp):
AGAAGAGAAAGAAAGAAAGAAAGAAAGAAGGAAAGAAAAGGAAAGG
Found at i:38637760 original size:84 final size:83
Alignment explanation
Indices: 38637637--38637888 Score: 395
Period size: 84 Copynumber: 3.0 Consensus size: 83
38637627 AGAAAGAAAG
*
38637637 AAAGA-AAGAAAGAAAGAAAGAAATGAGAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAAAGAAAG
1 AAAGAGAAGAAA-AAAGAAAGAAAAGA-AGGAAAGAAAAGGAAAGGAGAAGAGAAAAAAAGAAAG
38637701 AAAGAAGAAGAAGAAAAGGA
64 AAAGAAGAAGAAGAAAAGGA
38637721 AAAGAGAAGAAAAAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAAAGAAAGA
1 AAAGAGAAGAAAAAAGAAAG-AAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAAAGAAAGA
38637786 AAGAAGAAGAAGAAAAGGA
65 AAGAAGAAGAAGAAAAGGA
* *
38637805 AAAGAGAAGAAAAAAGAAAG-AAAGAAGGAAAGAAAAGGAAAAGAGAAGA-AAAAAGAGAGAAGA
1 AAAGAGAAGAAAAAAGAAAGAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAAAGA-AAGA
*
38637868 AAAAAGAAAGAA-AAAAGGA
65 AAGAAG-AAGAAGAAAAGGA
38637887 AA
1 AA
38637889 GAAAAGGAAA
Statistics
Matches: 160, Mismatches: 4, Indels: 10
0.92 0.02 0.06
Matches are distributed among these distances:
81 8 0.05
82 46 0.29
83 5 0.03
84 90 0.56
85 11 0.07
ACGTcount: A:0.71, C:0.00, G:0.28, T:0.00
Consensus pattern (83 bp):
AAAGAGAAGAAAAAAGAAAGAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAAAGAAAGAA
AGAAGAAGAAGAAAAGGA
Found at i:38637877 original size:53 final size:53
Alignment explanation
Indices: 38637625--38637921 Score: 245
Period size: 53 Copynumber: 5.5 Consensus size: 53
38637615 AAGGAGAGGG
* *
38637625 AAAGA-AAG-AAAGAAAGA-AAGAAAGAAAGAAAGAAATGAGAGGAAAGAAAAGGA
1 AAAGAGAAGAAAAAAAAGAGAAGAAA-AAAGAAAGAAA--AAAGGAAAGAAAAGGA
* * *
38637678 AAGGAGAAGAGAAAAAAAGA-AAGAAAGAAG-AAGAAGAAAAGGAAAAGAGAA-GA
1 AAAGAGAAGA-AAAAAAAGAGAAGAAAAAAGAAAGAA-AAAAGG-AAAGAAAAGGA
* * * *
38637731 AAAAAGAAAGAAAAAGAAG-GAAAGAAAAGGAAAGGAGAAGAGAAAA--AAAG-AAAGAA
1 AAAGAG-AAGAAAAAAAAGAG-AAG-AAA--AAA-GA-AAGAAAAAAGGAAAGAAAAGGA
*
38637787 AGAAGAAGAAGAAAAGGAAAAGAGAAGAAAAAAGAAAGAAAGAAGGAAAGAAAAGGA
1 A-AAG-AGAAGAAAA--AAAAGAGAAGAAAAAAGAAAGAAAAAAGGAAAGAAAAGGA
*
38637844 AAAGAGAAGAAAAAAGAGAGAAGAAAAAAGAAAGAAAAAAGGAAAGAAAAGGA
1 AAAGAGAAGAAAAAAAAGAGAAGAAAAAAGAAAGAAAAAAGGAAAGAAAAGGA
* *
38637897 AAGGAGAAGAGAAAAAAAAAGAAGA
1 AAAGAGAAGA-AAAAAAAGAGAAGA
38637922 GGGAAGGAAG
Statistics
Matches: 198, Mismatches: 22, Indels: 47
0.74 0.08 0.18
Matches are distributed among these distances:
53 68 0.34
54 41 0.21
55 20 0.10
56 30 0.15
57 17 0.09
58 6 0.03
59 11 0.06
60 5 0.03
ACGTcount: A:0.71, C:0.00, G:0.28, T:0.00
Consensus pattern (53 bp):
AAAGAGAAGAAAAAAAAGAGAAGAAAAAAGAAAGAAAAAAGGAAAGAAAAGGA
Found at i:38637927 original size:22 final size:25
Alignment explanation
Indices: 38637814--38637941 Score: 65
Period size: 22 Copynumber: 5.2 Consensus size: 25
38637804 AAAAGAGAAG
* *
38637814 AAAAAAGAAAGAAAGAAGGAAAGAAA
1 AAAAAAGAAAG-GAGAAGGAAGGAAA
* * * * *
38637840 AGGAAAAGAGAAGAAAAAAG-AGAGAAG
1 A-AAAAAGA-AAGGAGAAGGAAG-GAAA
*
38637867 AAAAAAGAAA-GA-AA-AAAGGAAA
1 AAAAAAGAAAGGAGAAGGAAGGAAA
* *
38637889 GAAAAGGAAAGGAGAA-G-A-GAAA
1 AAAAAAGAAAGGAGAAGGAAGGAAA
38637911 AAAAAAGAAGAGG-GAAGGAAGGAAA
1 AAAAAAGAA-AGGAGAAGGAAGGAAA
38637936 AAAAAA
1 AAAAAA
38637942 AGGTAATTTT
Statistics
Matches: 78, Mismatches: 14, Indels: 21
0.69 0.12 0.19
Matches are distributed among these distances:
22 25 0.32
23 11 0.14
24 4 0.05
25 12 0.15
26 8 0.10
27 15 0.19
28 3 0.04
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (25 bp):
AAAAAAGAAAGGAGAAGGAAGGAAA
Found at i:38637928 original size:28 final size:28
Alignment explanation
Indices: 38637838--38637943 Score: 92
Period size: 28 Copynumber: 3.8 Consensus size: 28
38637828 GAAGGAAAGA
* * *
38637838 AAAGGAAAAGAGAAGAAAAAAGAGAGAAG
1 AAAGGAGAAGAGAAAAAAAAAGA-AGAGG
** *
38637867 AAAAAAGAA-AGAAAAAAGGAAAGAAAAGG
1 AAAGGAGAAGAGAAAAAA--AAAGAAGAGG
38637896 AAAGGAGAAGAGAAAAAAAAAGAAGAGG
1 AAAGGAGAAGAGAAAAAAAAAGAAGAGG
* *
38637924 GAAGGA-AGGA-AAAAAAAAAG
1 AAAGGAGAAGAGAAAAAAAAAG
38637944 GTAATTTTAT
Statistics
Matches: 63, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
26 10 0.16
27 3 0.05
28 21 0.33
29 16 0.25
30 13 0.21
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (28 bp):
AAAGGAGAAGAGAAAAAAAAAGAAGAGG
Found at i:38637943 original size:123 final size:124
Alignment explanation
Indices: 38637643--38637921 Score: 325
Period size: 123 Copynumber: 2.2 Consensus size: 124
38637633 AAAGAAAGAA
* ** * *
38637643 AGAAAGAAAGAAAGAAATGAGAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAAAGAAAGAAAGAAG
1 AGAAAAAAAGAAAGAAAAAAGAAG-AAGAAAAGGAAA--AG-AGAAAAAAAAAGAAAGAAAGAAG
* *
38637708 AAGAAGAAAAGGAAAAGAGAAGAAAAAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAG
62 AAGAAGAAAAGGAAAAGAGAAGAAAAAAGAAAGAAAAAGAAAGAAAGAAAAGGAAAGGAAAAG
* * *
38637771 AGAAAAAAAGAAAGAAAGAAGAAGAAGAAAAGGAAAAGAGAAGAAAAAAGAAAGAAAGAAGGA-A
1 AGAAAAAAAGAAAGAAAAAAGAAGAAGAAAAGGAAAAGAGAAAAAAAAAGAAAGAAAGAAGAAGA
*
38637835 AGAAAAGGAAAAGAGAAGAAAAAAGAGAGAAGAAA-AAAGAAAGAAAAAAGGAAA-GAAAAG
66 AGAAAAGGAAAAGAGAAGAAAAAAGAAAGAA-AAAGAAAGAAAG--AAAAGGAAAGGAAAAG
** *
38637895 -G-AAAGGAGAAGAGAAAAAAAAAGAAGA
1 AGAAAAAAAGAA-AGAAAAAAGAAGAAGA
38637922 GGGAAGGAAG
Statistics
Matches: 133, Mismatches: 14, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
122 7 0.05
123 53 0.40
124 30 0.23
125 11 0.08
127 12 0.09
128 20 0.15
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (124 bp):
AGAAAAAAAGAAAGAAAAAAGAAGAAGAAAAGGAAAAGAGAAAAAAAAAGAAAGAAAGAAGAAGA
AGAAAAGGAAAAGAGAAGAAAAAAGAAAGAAAAAGAAAGAAAGAAAAGGAAAGGAAAAG
Found at i:38639009 original size:160 final size:160
Alignment explanation
Indices: 38638808--38639329 Score: 544
Period size: 160 Copynumber: 3.3 Consensus size: 160
38638798 TATGATATTT
*
38638808 TTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCAGAAGTAAGAGTGTATTACTAA
1 TTTAAAGTAATAAAATGCGGAGAAAATAATACGAACAAATGGCAGAAGTAAGAGTGTATTACTAA
* *
38638873 CTTTTATAAAATTCAGAAATAATTAATATCAAATATTTAAAAGAAAATGTACTAAAATAATATAA
66 CTTTTATAAAATTAAGAAATAATTAATATCAAATATTTAAAAGAAAATGTACTGAAATAATATAA
38638938 AACAATAAAATACGAGAATAATATATTTTTG
131 AACAATAAAATA-GAGAATAATATATTTTTG
* * *
38638969 TTTAAAGTAATAAAAAT-C-GAGAAAATAATACGAGCAAATGGCATG-GGTAAGGGT-TATT--T
1 TTTAAAGTAAT-AAAATGCGGAGAAAATAATACGAACAAATGGCA-GAAGTAAGAGTGTATTACT
* * * * * * ** *
38639028 ---TTTTACACCAAATTAATTTAAATAA-CACACTAGAGT-AATAAATTTCAAACATTATGCACT
64 AACTTTTATA--AAATTAA--GAAATAATTA-A-T--A-TCAA-ATATTTAAAAGAAAATGTACT
* ** *
38639088 GAAATAATGTAAAATTATAAAATTAGA-AAT--TATGA-TATT-
119 GAAATAATATAAAACAATAAAA-TAGAGAATAATAT-ATTTTTG
38639127 TTTAAAGTAATAAAATGCGGAGAAAA-AATACGAACAAATGGCAGAAGTAAGAGTGTATTACTAA
1 TTTAAAGTAATAAAATGCGGAGAAAATAATACGAACAAATGGCAGAAGTAAGAGTGTATTACTAA
*
38639191 CTTTTATAAAATTTAGAAATAATTAATA-CAAAATATTTAAAAGAAAATGTACTGAAATAATATA
66 CTTTTATAAAATTAAGAAATAATTAATATC-AAATATTTAAAAGAAAATGTACTGAAATAATATA
38639255 AAACAATAAAATAAGAGAATAATATATTTTTG
130 AAACAATAAAAT-AGAGAATAATATATTTTTG
* *
38639287 TTTAAAGTAATAAAAAT-C-GAGAAAATAATACGAGCAAAAGGCA
1 TTTAAAGTAAT-AAAATGCGGAGAAAATAATACGAACAAATGGCA
38639330 TGGGTAAGGG
Statistics
Matches: 289, Mismatches: 38, Indels: 69
0.73 0.10 0.17
Matches are distributed among these distances:
154 6 0.02
155 1 0.00
156 43 0.15
157 14 0.05
158 43 0.15
159 36 0.12
160 65 0.22
161 26 0.09
162 47 0.16
163 2 0.01
164 6 0.02
ACGTcount: A:0.51, C:0.07, G:0.13, T:0.29
Consensus pattern (160 bp):
TTTAAAGTAATAAAATGCGGAGAAAATAATACGAACAAATGGCAGAAGTAAGAGTGTATTACTAA
CTTTTATAAAATTAAGAAATAATTAATATCAAATATTTAAAAGAAAATGTACTGAAATAATATAA
AACAATAAAATAGAGAATAATATATTTTTG
Found at i:38639157 original size:158 final size:158
Alignment explanation
Indices: 38638969--38639487 Score: 580
Period size: 159 Copynumber: 3.3 Consensus size: 158
38638959 TATATTTTTG
*
38638969 TTTAAAGTAATAAAAATCGAGAAAATAATACGAGCAAATGGCATGGGTAAGGGTTATTTTTTTAC
1 TTTAAAGTAATAAAAATCGAGAAAATAATACGAACAAATGGCATGGGTAAGGGTTATTTTTTTAC
38639034 ACCAAATTAATTTAAATAACACACTAGAGTAATAAATTTCAAACATTATGCACTGAAATAATGTA
66 ACCAAATTAATTTAAATAACACACTAGAGTAATAAATTTCAAACATTATGCACTGAAATAATGTA
38639099 AAATTATAAAATTAGAAATTATGATATT
131 AAATTATAAAATTAGAAATTATGATATT
* *
38639127 TTTAAAGTAAT-AAAATGCGGAGAAAA-AATACGAACAAATGGCA-GAAGTAAGAGTGTATTACT
1 TTTAAAGTAATAAAAAT-C-GAGAAAATAATACGAACAAATGGCATG-GGTAAGGGT-TATT--T
* ** * * * * * ** *
38639189 AACTTTTATA--AAATT--TAGAAATAATTA-A-TACA--AA-ATATTTAAAAGAAAATGTACTG
60 ---TTTTACACCAAATTAATTTAAATAA-CACACTAGAGTAATAAATTTCAAACATTATGCACTG
* ** * *
38639245 AAATAATATAAAACAATAAAATAAGAGAATAATAT-ATTTTT
121 AAATAATGTAAAATTATAAAATTAGA-AAT--TATGA-TATT
* *
38639286 GTTTAAAGTAATAAAAATCGAGAAAATAATACGAGCAAAAGGCATGGGTAAGGGTTATTTTTTTA
1 -TTTAAAGTAATAAAAATCGAGAAAATAATACGAACAAATGGCATGGGTAAGGGTTATTTTTTTA
*
38639351 CACCAAATTAATTTAAATAACACACTAGAGTAATAAATTTCAAACATTATGCATTGAAATAATGT
65 CACCAAATTAATTTAAATAACACACTAGAGTAATAAATTTCAAACATTATGCACTGAAATAATGT
38639416 AAAATTATAAAATTAGAAATTATGATATT
130 AAAATTATAAAATTAGAAATTATGATATT
*
38639445 TTTAAAGTAAT-AAAATGCGGAGAAAAAAATACGAACAAATGGC
1 TTTAAAGTAATAAAAAT-C-GAGAAAATAATACGAACAAATGGC
38639488 CGAAGTAAGA
Statistics
Matches: 288, Mismatches: 43, Indels: 59
0.74 0.11 0.15
Matches are distributed among these distances:
154 6 0.02
156 43 0.15
157 18 0.06
158 56 0.19
159 61 0.21
160 43 0.15
161 13 0.05
162 42 0.15
164 6 0.02
ACGTcount: A:0.50, C:0.08, G:0.13, T:0.30
Consensus pattern (158 bp):
TTTAAAGTAATAAAAATCGAGAAAATAATACGAACAAATGGCATGGGTAAGGGTTATTTTTTTAC
ACCAAATTAATTTAAATAACACACTAGAGTAATAAATTTCAAACATTATGCACTGAAATAATGTA
AAATTATAAAATTAGAAATTATGATATT
Found at i:38639309 original size:318 final size:319
Alignment explanation
Indices: 38638729--38639514 Score: 1407
Period size: 318 Copynumber: 2.5 Consensus size: 319
38638719 TATTCCCCCT
* * * *
38638729 TAACACACTAAATTAATAAATTTCAAACATGATGCACTGAAATAATGTAAAATTATAAAAGACTA
1 TAACACACTAGAGTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATTAT-AAA-ATTA
**
38638794 -AGTTTATGATATTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCAGAAGTA
64 GAAATTATGATA-TTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCAGAAGTA
38638858 AGAGTGTATTACTAACTTTTATAAAATTCAGAAATAATTAATATCAAATATTTAAAAGAAAATGT
128 AGAGTGTATTACTAACTTTTATAAAATTCAGAAATAATTAATATCAAATATTTAAAAGAAAATGT
*
38638923 ACTAAAATAATATAAAACAATAAAATACGAGAATAATATATTTTTGTTTAAAGTAATAAAAATCG
193 ACTAAAATAATATAAAACAATAAAATAAGAGAATAATATATTTTTGTTTAAAGTAATAAAAATCG
*
38638988 AGAAAATAATACGAGCAAATGGCATGGGTAAGGGTTATTTTTTTACACCAAATTAATTTAAA
258 AGAAAATAATACGAGCAAAAGGCATGGGTAAGGGTTATTTTTTTACACCAAATTAATTTAAA
38639050 TAACACACTAGAGTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATTATAAAATTAGA
1 TAACACACTAGAGTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATTATAAAATTAGA
38639115 AATTATGATATTTTTAAAGTAATAAAATGCGGAG-AAAAAATACGAACAAATGGCAGAAGTAAGA
66 AATTATGATATTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCAGAAGTAAGA
*
38639179 GTGTATTACTAACTTTTATAAAATTTAGAAATAATTAATA-CAAAATATTTAAAAGAAAATGTAC
131 GTGTATTACTAACTTTTATAAAATTCAGAAATAATTAATATC-AAATATTTAAAAGAAAATGTAC
*
38639243 TGAAATAATATAAAACAATAAAATAAGAGAATAATATATTTTTGTTTAAAGTAATAAAAATCGAG
195 TAAAATAATATAAAACAATAAAATAAGAGAATAATATATTTTTGTTTAAAGTAATAAAAATCGAG
38639308 AAAATAATACGAGCAAAAGGCATGGGTAAGGGTTATTTTTTTACACCAAATTAATTTAAA
260 AAAATAATACGAGCAAAAGGCATGGGTAAGGGTTATTTTTTTACACCAAATTAATTTAAA
*
38639368 TAACACACTAGAGTAATAAATTTCAAACATTATGCATTGAAATAATGTAAAATTATAAAATTAGA
1 TAACACACTAGAGTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATTATAAAATTAGA
*
38639433 AATTATGATATTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAGA
66 AATTATGATATTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCAGAAGTAAGA
38639498 GTGTATTACTAACTTTT
131 GTGTATTACTAACTTTT
38639515 TTTTCAACTT
Statistics
Matches: 450, Mismatches: 12, Indels: 8
0.96 0.03 0.02
Matches are distributed among these distances:
317 1 0.00
318 311 0.69
319 73 0.16
320 12 0.03
321 53 0.12
ACGTcount: A:0.49, C:0.08, G:0.13, T:0.30
Consensus pattern (319 bp):
TAACACACTAGAGTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATTATAAAATTAGA
AATTATGATATTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCAGAAGTAAGA
GTGTATTACTAACTTTTATAAAATTCAGAAATAATTAATATCAAATATTTAAAAGAAAATGTACT
AAAATAATATAAAACAATAAAATAAGAGAATAATATATTTTTGTTTAAAGTAATAAAAATCGAGA
AAATAATACGAGCAAAAGGCATGGGTAAGGGTTATTTTTTTACACCAAATTAATTTAAA
Found at i:38641480 original size:3 final size:3
Alignment explanation
Indices: 38641472--38641509 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
38641462 TCTTAATACT
38641472 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
38641510 TAATAATAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:38641606 original size:19 final size:21
Alignment explanation
Indices: 38641582--38641620 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
38641572 ACTAAAACAA
*
38641582 AAAAT-ATTACAA-AATATAC
1 AAAATAATAACAACAATATAC
38641601 AAAATAATAACAACAATATA
1 AAAATAATAACAACAATATA
38641621 ATCAAAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 6 0.35
21 6 0.35
ACGTcount: A:0.67, C:0.10, G:0.00, T:0.23
Consensus pattern (21 bp):
AAAATAATAACAACAATATAC
Found at i:38641797 original size:27 final size:27
Alignment explanation
Indices: 38641767--38641851 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
38641757 CCAAACAATA
38641767 TGGCACCATTGGTGCCGCCAATGGCAT
1 TGGCACCATTGGTGCCGCCAATGGCAT
* **
38641794 TGGCACCATTGGTGCCACCAATGGTTT
1 TGGCACCATTGGTGCCGCCAATGGCAT
* **
38641821 TGGCACCTTTGGTGCCGCCAATACCAT
1 TGGCACCATTGGTGCCGCCAATGGCAT
38641848 TGGC
1 TGGC
38641852 GTGACCAAGG
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.18, C:0.29, G:0.27, T:0.26
Consensus pattern (27 bp):
TGGCACCATTGGTGCCGCCAATGGCAT
Found at i:38645203 original size:25 final size:26
Alignment explanation
Indices: 38645171--38645225 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 26
38645161 TTATTAAATT
*
38645171 ATATATTTTAATTATAA-TATATTTA
1 ATATATTTTAATAATAATTATATTTA
*
38645196 ATATA-TTTAATAATAATTATGTTTA
1 ATATATTTTAATAATAATTATATTTA
38645221 A-ATAT
1 ATATAT
38645226 GATTAAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 13 0.50
25 13 0.50
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (26 bp):
ATATATTTTAATAATAATTATATTTA
Found at i:38645450 original size:45 final size:44
Alignment explanation
Indices: 38645363--38645457 Score: 131
Period size: 45 Copynumber: 2.1 Consensus size: 44
38645353 TTACACCTCT
*
38645363 ATTACATTCAACCAAATACAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAATACAGTTTTACTATTACACCTCTATTCC
*
38645407 ATTACATTCAACC-AA-ACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAATACAG-T--TTTACTATTACACCTCTATTCC
38645452 ATTACA
1 ATTACA
38645458 CTTCTAATCC
Statistics
Matches: 46, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
42 4 0.09
43 3 0.07
44 13 0.28
45 26 0.57
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.36
Consensus pattern (44 bp):
ATTACATTCAACCAAATACAGTTTTACTATTACACCTCTATTCC
Found at i:38645487 original size:16 final size:16
Alignment explanation
Indices: 38645438--38645489 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
38645428 GATTTGCTAT
* *
38645438 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
*
38645454 TACACTTCTAATCCAA
1 TACACCTCTAATCCAA
*
38645470 TACACCTCTAATCTAA
1 TACACCTCTAATCCAA
38645486 TACA
1 TACA
38645490 GCGAACCAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.35, C:0.33, G:0.00, T:0.33
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:38648364 original size:54 final size:54
Alignment explanation
Indices: 38648301--38648533 Score: 234
Period size: 54 Copynumber: 4.1 Consensus size: 54
38648291 AGTATCATAT
*
38648301 ATTATGATTTGAGTAAATTCATATAAAAATATTAATTATTAAGAATTTTATTAA
1 ATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
*
38648355 ATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
1 ATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
* * * * * * * * *
38648409 ATTATATATTTTAATTATAATAT-ATTTAATAATAATTATGTTAATTTATATTTTATAGTATCAT
1 ATTAT-GA-TTTGAGTA-AAT-TCATATAAGAAT-ATTA-ATT-ATTAAGAATTT-TA-T-T-A-
38648473 A
54 A
*
38648474 TATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
1 -ATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
38648529 ATTAT
1 ATTAT
38648534 ATATTTTAAT
Statistics
Matches: 143, Mismatches: 22, Indels: 28
0.74 0.11 0.15
Matches are distributed among these distances:
54 62 0.43
55 2 0.01
56 7 0.05
57 12 0.08
58 5 0.03
59 4 0.03
60 16 0.11
61 4 0.03
62 5 0.03
63 12 0.08
64 7 0.05
65 2 0.01
66 5 0.03
ACGTcount: A:0.43, C:0.02, G:0.08, T:0.48
Consensus pattern (54 bp):
ATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
Found at i:38648401 original size:28 final size:27
Alignment explanation
Indices: 38648316--38648401 Score: 63
Period size: 28 Copynumber: 3.1 Consensus size: 27
38648306 GATTTGAGTA
*
38648316 AATTCATATAAAAATATTAATTATTAAG
1 AATTCATAT-AAAATATTGATTATTAAG
* * *
38648344 AATT-TTATTAAAT-TATGA-T-TTGAG
1 AATTCATATAAAATAT-TGATTATTAAG
38648368 TAAATTCATATAAGAATATTGATTATTAAG
1 --AATTCATATAA-AATATTGATTATTAAG
38648398 AATT
1 AATT
38648402 TTATTAAATT
Statistics
Matches: 43, Mismatches: 7, Indels: 16
0.65 0.11 0.24
Matches are distributed among these distances:
24 4 0.09
25 2 0.05
26 10 0.23
27 7 0.16
28 14 0.33
29 2 0.05
30 4 0.09
ACGTcount: A:0.47, C:0.02, G:0.08, T:0.43
Consensus pattern (27 bp):
AATTCATATAAAATATTGATTATTAAG
Found at i:38648438 original size:15 final size:15
Alignment explanation
Indices: 38648403--38648454 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
38648393 TTAAGAATTT
*
38648403 TATTAAATTAT-ATA
1 TATTTAATTATAATA
38648417 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
38648431 TATTTAATAATAAT-
1 TATTTAATTATAATA
38648445 TATGTTAATT
1 TAT-TTAATT
38648455 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:38648480 original size:120 final size:120
Alignment explanation
Indices: 38648355--38648570 Score: 432
Period size: 120 Copynumber: 1.8 Consensus size: 120
38648345 ATTTTATTAA
38648355 ATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTT
1 ATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTT
38648420 TAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATCATAT
66 TAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATCATAT
38648475 ATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTT
1 ATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTT
38648540 TAATTATAATATATTTAATAATAATTATGTT
66 TAATTATAATATATTTAATAATAATTATGTT
38648571 TAAATATGAT
Statistics
Matches: 96, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
120 96 1.00
ACGTcount: A:0.42, C:0.01, G:0.07, T:0.50
Consensus pattern (120 bp):
ATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTT
TAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATCATAT
Found at i:38648553 original size:16 final size:16
Alignment explanation
Indices: 38648532--38648573 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
38648522 TTATTAAATT
*
38648532 ATATATTTTAATTATA
1 ATATATTTTAATAATA
38648548 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
38648563 AT-TATGTTTAA
1 ATATAT-TTTAA
38648574 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:38648558 original size:15 final size:15
Alignment explanation
Indices: 38648523--38648564 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
38648513 TTAAGAATTT
*
38648523 TATTAAATTAT-ATA
1 TATTTAATTATAATA
38648537 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
38648551 TATTTAATAATAAT
1 TATTTAATTATAAT
38648565 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:38648784 original size:45 final size:43
Alignment explanation
Indices: 38648684--38648793 Score: 120
Period size: 45 Copynumber: 2.6 Consensus size: 43
38648674 TTTTCCATTA
38648684 TGCTATTACACCTCTATT-C---CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATACATTCAACCAAACACAAGAT
* * ***
38648723 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCA-TACATTCAACCAAACACAAGA-T
38648768 TGCTATTACACCTCTATTCCAATACA
1 TGCTATTACACCTCTATTCC-ATACA
38648794 CCTCTATTCC
Statistics
Matches: 57, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
44 16 0.28
45 23 0.40
46 1 0.02
ACGTcount: A:0.33, C:0.29, G:0.05, T:0.33
Consensus pattern (43 bp):
TGCTATTACACCTCTATTCCATACATTCAACCAAACACAAGAT
Found at i:38648795 original size:16 final size:16
Alignment explanation
Indices: 38648774--38648841 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
38648764 GATTTGCTAT
*
38648774 TACACCTCTATTCCAA
1 TACACCTCTAATCCAA
*
38648790 TACACCTCTATTCCAA
1 TACACCTCTAATCCAA
38648806 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
38648822 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
38648838 TACA
1 TACA
38648842 GCGAACCAAA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
16 51 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:38650451 original size:22 final size:22
Alignment explanation
Indices: 38650420--38650469 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
38650410 CACAAATCGA
*
38650420 TTTTTTTTTC-TTTTGTTT-AGT
1 TTTTTTTTTCATTTT-TTTCAAT
38650441 TTTTTTGTTTCATTTTTTTCAAT
1 TTTTTT-TTTCATTTTTTTCAAT
38650464 TTTTTT
1 TTTTTT
38650470 ACTATCAGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 6 0.24
22 7 0.28
23 12 0.48
ACGTcount: A:0.08, C:0.06, G:0.06, T:0.80
Consensus pattern (22 bp):
TTTTTTTTTCATTTTTTTCAAT
Found at i:38650603 original size:9 final size:9
Alignment explanation
Indices: 38650587--38650628 Score: 57
Period size: 9 Copynumber: 4.7 Consensus size: 9
38650577 GAGTTAAACG
38650587 AATCGAGTT
1 AATCGAGTT
**
38650596 GTTCGAGTT
1 AATCGAGTT
38650605 AATCGAGTT
1 AATCGAGTT
38650614 AATCGAGTT
1 AATCGAGTT
*
38650623 ATTCGA
1 AATCGA
38650629 ATTGACTCAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.36
Consensus pattern (9 bp):
AATCGAGTT
Found at i:38650696 original size:9 final size:9
Alignment explanation
Indices: 38650682--38650709 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
38650672 TGAGTTTTCG
38650682 AATTCGAAT
1 AATTCGAAT
38650691 AATTCGAAT
1 AATTCGAAT
38650700 AATTCGAAT
1 AATTCGAAT
38650709 A
1 A
38650710 TCAAACTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:38650957 original size:30 final size:31
Alignment explanation
Indices: 38650923--38650982 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
38650913 AAACCTTTTA
*
38650923 TTTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
* *
38650953 TTTTCCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCA
38650983 TCCCACCTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.20, C:0.40, G:0.00, T:0.40
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:38651639 original size:5 final size:5
Alignment explanation
Indices: 38651629--38651654 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
38651619 GAACAAATAT
38651629 ATTCG ATTCG ATTCG ATTCG ATTCG A
1 ATTCG ATTCG ATTCG ATTCG ATTCG A
38651655 ATTCCATCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38
Consensus pattern (5 bp):
ATTCG
Found at i:38652064 original size:963 final size:950
Alignment explanation
Indices: 38650818--38652704 Score: 3409
Period size: 963 Copynumber: 2.0 Consensus size: 950
38650808 ACTCCCCTCC
38650818 CCTCTCAACCCCCCAATCTACCCAAAATCCATTTCCCACCAAAATTTTACTCTCCCATTTATTTT
1 CCTCTCAACCCCCCAATCTACCCAAAATCCATTTCCCACCAAAATTTTACTCTCCCATTTATTTT
38650883 TTCTCAAAATTTTACTCCCAAAAACCCTCAAAACCTTTTATTTTCCCCCAAAATTTTTACTCCCT
66 TTCTCAAAATTTTACTCCCAAAAACCCTCAAAACCTTTTATTTTCCCCCAAAATTTTTACTCCCT
**
38650948 CCCACTTTTCCCCTAAAACTTTTATTCCCTTCCCATCCCACCTCCCATTTATCCCAAACCCTCCC
131 CCCACTTTTCCCCTAAAACTTTTATTCCCTTCCCATCCCACCTCCCACCTATCCCAAACCCTCCC
* *
38651013 CCCTCCAATTTTTTTTAATATTTTCCCTTCAAAATTTTACTCCCCCCTATTTACTTTCCCTCAAA
196 CCCTCCAATTTTTTTTAATATTTTCCCTCCAAAATTTTACTCCCCCCTATTTACTTACCCTCAAA
*
38651078 CTTTTATTCCCCAAAACTTTTTATTTTTCCCCTAAACTTTTACTTCTCACCCTTTACTCTCAAAT
261 CTTTTATTCCCCAAAACTTTTTATTTTTCCCCTAAACTTTTACTTCTCACACTTTACTCTCAAAT
* *
38651143 AAAAAAAACCAAATTATCTAAAAAAAATCACTAAACATAAATAGTAATAATTTTATTTACATCTA
326 -AAAAAAACAAAATTATCCAAAAAAAATCACTAAACATAAATAGTAATAATTTTATTTACATCTA
38651208 CTATTTATATTATTAAATTAAATTTCACATTTTATATTATTTATATTAGTGAATTGTTT-AGTCA
390 CTATTTATATTATTAAATTAAATTTCACATTTTATATTATTTATATTAGTGAATTGTTTAAG-CA
*
38651272 TATTGAATTTTTATATTAAAATTGAATTATTAATTATTCCATAAAATATTCATGTTAAAATTTTA
454 TATTGAATATTTATATTAAAATTGAATTATTAATTATTCCATAAAATATTCATGTTAAAATTTTA
*
38651337 TATTGGTATCAATTTTACATTTTATTTTTAAAATAACTTTTATTAAAAAAAATCATATTTTTACA
519 TATTGGTATCAATTTCACATTTTATTTTTAAAATAACTTTTATT--AAAAAATCATATTTTTACA
38651402 TTTAATATATTTTTTAATTCTAAAATACATAGTGACAAGAATATGAAGATAATTGAAACAACTAA
582 TTTAATATATTTTTTAATTCTAAAATACATAGTGACAAGAATATGAAGATAATTGAAACAACTAA
38651467 GCAAGCAAAGAAGCTAACCAATATATAAAAAATTAATAAATAAATTATGAAGTGATGAAAGTTAA
647 GCAAGCAAAGAAGCTAACCAATATATAAAAAATTAATAAATAAATTATGAAGTGATGAAAGTTAA
38651532 TAAAAAATTTGATTAAGGTGGACAAATTTTATTACGATGGGTGACAATGGTTACAAGGACCCAAA
712 TAAAAAATTTGATTAAGGTGGACAAATTTTATTACGATGGGTGACAATGGTTACAAGGACCCAAA
*
38651597 ATTATTTTTTAAAATTTAACTTGAACAAATATATTCGATTCGATTCGATTCGATTCGAATTCCAT
777 ATTATTTTTTAAAATTTAACTCGAAC--A-A-A-T--A-T--ATTCGATTCGATTCGAATTCCAT
38651662 CTCACTCGACTCAATTCGAGAAAACTTCAAATAAAGTTAGGATGATAAAATGAGATTCGAAAACT
832 CTCACTCGACTCAATTCGAGAAAACTTCAAATAAAGTTAGGATGATAAAATGAGATTCGAAAACT
*
38651727 CGATTAATTCGAAAATTTTCGATTCGATTCGATTCGATCGAATGCTCACTCCTA
897 CGATTAACTCGAAAATTTTCGATTCGATTCGATTCGATCGAATGCTCACTCCTA
* *
38651781 CCTCTCAACCCCCCAATCTACCCAAAATCTATTTTCCACCAAAATTTTACTCTCCCATTTATTTT
1 CCTCTCAACCCCCCAATCTACCCAAAATCCATTTCCCACCAAAATTTTACTCTCCCATTTATTTT
38651846 TTCTCAAAATTTTACTCCCAAAAACCCTCAAAACCTTTTATTTTCCCCCAAAATTTTTACTCCCT
66 TTCTCAAAATTTTACTCCCAAAAACCCTCAAAACCTTTTATTTTCCCCCAAAATTTTTACTCCCT
* * *
38651911 CCCACTTTTCCCCTAAAATTTTTATTCCCTTCCCCTCCCACCTCCCACCTATCCCAAACCTTCCC
131 CCCACTTTTCCCCTAAAACTTTTATTCCCTTCCCATCCCACCTCCCACCTATCCCAAACCCTCCC
38651976 CCCTCCAATTTTTTTTAATATTTTCCCTCCAAAATTTTACT-CCCCCTATTTACTTACCCTCAAA
196 CCCTCCAATTTTTTTTAATATTTTCCCTCCAAAATTTTACTCCCCCCTATTTACTTACCCTCAAA
*
38652040 CTTTTATTCCCCAAAACTTTTTTATTTTTCCCCTAAACTTTTACTTCTCACACTTTACTTTCAAA
261 CTTTTATTCCCCAAAAC-TTTTTATTTTTCCCCTAAACTTTTACTTCTCACACTTTACTCTCAAA
* *
38652105 TAAAAAATCAAAATTATCCAAAAAAAATCACTAAACATAAATAGTAATAATTTTATTTATATCTA
325 TAAAAAAACAAAATTATCCAAAAAAAATCACTAAACATAAATAGTAATAATTTTATTTACATCTA
*
38652170 CTATTTATATTATTAAATTAAATTTCACATTTTATATTATTTATATTATTGAATTGTTTAAGCAT
390 CTATTTATATTATTAAATTAAATTTCACATTTTATATTATTTATATTAGTGAATTGTTTAAGCAT
* *
38652235 ATTGAATATTTATATTAAAATTGTATTATTAATTATTCCATAAAATATTCGTGTTAAAATTTTAT
455 ATTGAATATTTATATTAAAATTGAATTATTAATTATTCCATAAAATATTCATGTTAAAATTTTAT
38652300 ATTGGTATCAATTTCACATTTTATTTTTAAAATAACTTTTATTAAAAAATCATATTTTTACATTT
520 ATTGGTATCAATTTCACATTTTATTTTTAAAATAACTTTTATTAAAAAATCATATTTTTACATTT
38652365 AATATATTTTTTAATTCTAAAATACATAGTGACAAGAATATGAAGATAATTGAAACAACTAAGCA
585 AATATATTTTTTAATTCTAAAATACATAGTGACAAGAATATGAAGATAATTGAAACAACTAAGCA
38652430 AGCAAAGAAGCTAACCAATATATAAAAAATTAATAAATAAATTATGAAGTGATGAAAGTTAATAA
650 AGCAAAGAAGCTAACCAATATATAAAAAATTAATAAATAAATTATGAAGTGATGAAAGTTAATAA
*
38652495 AAAATTTGATTAAGGTGGACAAATTTTATTACGATGGGTGACAATGGTTACAATGACCCAAAATT
715 AAAATTTGATTAAGGTGGACAAATTTTATTACGATGGGTGACAATGGTTACAAGGACCCAAAATT
*
38652560 ATTTTTTAAAATTTAACTCGAACAAATATATTCGATTCGATTCGAATTCCATCTCACTCGACTCG
780 ATTTTTTAAAATTTAACTCGAACAAATATATTCGATTCGATTCGAATTCCATCTCACTCGACTCA
38652625 ATTCGAGAAAACTTCAAATAAAGTTAGGATGATAAAATGAGATTCGAAAACTCGATTAACTCGAA
845 ATTCGAGAAAACTTCAAATAAAGTTAGGATGATAAAATGAGATTCGAAAACTCGATTAACTCGAA
38652690 AATTTTCGATTCGAT
910 AATTTTCGATTCGAT
38652705 CGAATGCTCA
Statistics
Matches: 898, Mismatches: 24, Indels: 17
0.96 0.03 0.02
Matches are distributed among these distances:
950 114 0.13
952 1 0.00
953 1 0.00
955 1 0.00
956 1 0.00
957 1 0.00
958 1 0.00
960 238 0.27
962 264 0.29
963 276 0.31
ACGTcount: A:0.37, C:0.19, G:0.06, T:0.38
Consensus pattern (950 bp):
CCTCTCAACCCCCCAATCTACCCAAAATCCATTTCCCACCAAAATTTTACTCTCCCATTTATTTT
TTCTCAAAATTTTACTCCCAAAAACCCTCAAAACCTTTTATTTTCCCCCAAAATTTTTACTCCCT
CCCACTTTTCCCCTAAAACTTTTATTCCCTTCCCATCCCACCTCCCACCTATCCCAAACCCTCCC
CCCTCCAATTTTTTTTAATATTTTCCCTCCAAAATTTTACTCCCCCCTATTTACTTACCCTCAAA
CTTTTATTCCCCAAAACTTTTTATTTTTCCCCTAAACTTTTACTTCTCACACTTTACTCTCAAAT
AAAAAAACAAAATTATCCAAAAAAAATCACTAAACATAAATAGTAATAATTTTATTTACATCTAC
TATTTATATTATTAAATTAAATTTCACATTTTATATTATTTATATTAGTGAATTGTTTAAGCATA
TTGAATATTTATATTAAAATTGAATTATTAATTATTCCATAAAATATTCATGTTAAAATTTTATA
TTGGTATCAATTTCACATTTTATTTTTAAAATAACTTTTATTAAAAAATCATATTTTTACATTTA
ATATATTTTTTAATTCTAAAATACATAGTGACAAGAATATGAAGATAATTGAAACAACTAAGCAA
GCAAAGAAGCTAACCAATATATAAAAAATTAATAAATAAATTATGAAGTGATGAAAGTTAATAAA
AAATTTGATTAAGGTGGACAAATTTTATTACGATGGGTGACAATGGTTACAAGGACCCAAAATTA
TTTTTTAAAATTTAACTCGAACAAATATATTCGATTCGATTCGAATTCCATCTCACTCGACTCAA
TTCGAGAAAACTTCAAATAAAGTTAGGATGATAAAATGAGATTCGAAAACTCGATTAACTCGAAA
ATTTTCGATTCGATTCGATTCGATCGAATGCTCACTCCTA
Found at i:38656170 original size:21 final size:21
Alignment explanation
Indices: 38656144--38656184 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
38656134 ACCTGCTGAC
38656144 GTGGAAGGAAATCGCGTCCTT
1 GTGGAAGGAAATCGCGTCCTT
38656165 GTGGAAGGAAATCGCGTCCT
1 GTGGAAGGAAATCGCGTCCT
38656185 CAAGGACGCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.20, G:0.34, T:0.22
Consensus pattern (21 bp):
GTGGAAGGAAATCGCGTCCTT
Found at i:38656490 original size:30 final size:30
Alignment explanation
Indices: 38656456--38656514 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
38656446 ACAAATCCTA
* *
38656456 TCTCAATTTCCTTCCAAAATTTTCTCAAAC
1 TCTCAATTTCCTTCCAAAAATCTCTCAAAC
38656486 TCTCAATTTCCTTCCAAAAATCTCTCAAA
1 TCTCAATTTCCTTCCAAAAATCTCTCAAA
38656515 TCCATATTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.31, G:0.00, T:0.37
Consensus pattern (30 bp):
TCTCAATTTCCTTCCAAAAATCTCTCAAAC
Found at i:38656581 original size:30 final size:31
Alignment explanation
Indices: 38656547--38656612 Score: 116
Period size: 30 Copynumber: 2.2 Consensus size: 31
38656537 CCTCAATTTC
*
38656547 ATTTTTTTAAAATAATTTT-AATTTTTTTAT
1 ATTTTTTAAAAATAATTTTAAATTTTTTTAT
38656577 ATTTTTTAAAAATAATTTTAAATTTTTTTAT
1 ATTTTTTAAAAATAATTTTAAATTTTTTTAT
38656608 ATTTT
1 ATTTT
38656613 CATCAATGGC
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 18 0.53
31 16 0.47
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (31 bp):
ATTTTTTAAAAATAATTTTAAATTTTTTTAT
Found at i:38658959 original size:30 final size:30
Alignment explanation
Indices: 38658925--38659272 Score: 535
Period size: 30 Copynumber: 11.8 Consensus size: 30
38658915 TACTAAAAAT
*
38658925 CCTAATTTAATTAAAAACCCTAAACACTAA
1 CCTAATTTAATTAAAAACCCTAAACCCTAA
* * *
38658955 CCTAATTTAATTAAAAATCGTAAA-CCTCA
1 CCTAATTTAATTAAAAACCCTAAACCCTAA
*
38658984 CCTAATTTAATTAAAAACTCT-AACCCTAA
1 CCTAATTTAATTAAAAACCCTAAACCCTAA
*
38659013 CCTAATTTAATAAAAAACCCTAAACCCTAA
1 CCTAATTTAATTAAAAACCCTAAACCCTAA
*
38659043 CCTAATTTAATTAAAAACCATAAACCCTAA
1 CCTAATTTAATTAAAAACCCTAAACCCTAA
38659073 CCTAATTTAATTAAAAACCCT-AACCCTAA
1 CCTAATTTAATTAAAAACCCTAAACCCTAA
* *
38659102 CCTAATTTAATTAAAACCCCTAAACCCAAA
1 CCTAATTTAATTAAAAACCCTAAACCCTAA
38659132 CCTAATTTAATTAAAAACCCTAAA-CCTAA
1 CCTAATTTAATTAAAAACCCTAAACCCTAA
38659161 CCTAATTTAATTAAAAACCCT-AACCCTAA
1 CCTAATTTAATTAAAAACCCTAAACCCTAA
* * * *
38659190 CTTGATTTAATTAAAAATCGTAAACCCTAA
1 CCTAATTTAATTAAAAACCCTAAACCCTAA
*
38659220 CCTAATTTAATTAAAAACCCTAAATCCTAA
1 CCTAATTTAATTAAAAACCCTAAACCCTAA
38659250 CCTAATTTAATTAAAAACCCTAA
1 CCTAATTTAATTAAAAACCCTAA
38659273 CCATTAACAA
Statistics
Matches: 287, Mismatches: 26, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
28 4 0.01
29 119 0.41
30 164 0.57
ACGTcount: A:0.47, C:0.24, G:0.01, T:0.28
Consensus pattern (30 bp):
CCTAATTTAATTAAAAACCCTAAACCCTAA
Found at i:38659046 original size:59 final size:60
Alignment explanation
Indices: 38658925--38659272 Score: 535
Period size: 59 Copynumber: 5.9 Consensus size: 60
38658915 TACTAAAAAT
* * * *
38658925 CCTAATTTAATTAAAAACCCTAAACACTAACCTAATTTAATTAAAAATCGTAAA-CCTCA
1 CCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAA
* *
38658984 CCTAATTTAATTAAAAACTCT-AACCCTAACCTAATTTAATAAAAAACCCTAAACCCTAA
1 CCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAA
*
38659043 CCTAATTTAATTAAAAACCATAAACCCTAACCTAATTTAATTAAAAACCCT-AACCCTAA
1 CCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAA
* *
38659102 CCTAATTTAATTAAAACCCCTAAACCCAAACCTAATTTAATTAAAAACCCTAAA-CCTAA
1 CCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAA
* * * *
38659161 CCTAATTTAATTAAAAACCCT-AACCCTAACTTGATTTAATTAAAAATCGTAAACCCTAA
1 CCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAA
*
38659220 CCTAATTTAATTAAAAACCCTAAATCCTAACCTAATTTAATTAAAAACCCTAA
1 CCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAA
38659273 CCATTAACAA
Statistics
Matches: 261, Mismatches: 23, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
58 55 0.21
59 150 0.57
60 56 0.21
ACGTcount: A:0.47, C:0.24, G:0.01, T:0.28
Consensus pattern (60 bp):
CCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAA
Found at i:38662690 original size:122 final size:123
Alignment explanation
Indices: 38662471--38662748 Score: 479
Period size: 122 Copynumber: 2.3 Consensus size: 123
38662461 CCACGAGGGT
*
38662471 GCGATTTTATACTATTTGCTCAGAAACGTAAAAAAAAATTATTTCTTACATGACCAACTGTAGCG
1 GCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAA-TATTTCTTACATGACCAACTGTAGCG
38662536 AAATCGCGTCAACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAA
65 AAATCGCGTCAACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAA
*
38662595 GCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAA-ATTTCTTACATGACCAATTGTAGCGA
1 GCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATATTTCTTACATGACCAACTGTAGCGA
*
38662659 AATCGCGTCCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAA
66 AATCGCGTCAACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAA
* *
38662717 GCGACTTTATAATATTTGACT-AGAAACGTCAA
1 GCGATTTTATACTATTTG-CTCAGAAACGTCAA
38662749 CTCGAAATAA
Statistics
Matches: 148, Mismatches: 5, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
122 109 0.74
123 2 0.01
124 37 0.25
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (123 bp):
GCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATATTTCTTACATGACCAACTGTAGCGA
AATCGCGTCAACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAA
Found at i:38664362 original size:43 final size:43
Alignment explanation
Indices: 38664301--38664530 Score: 334
Period size: 43 Copynumber: 5.3 Consensus size: 43
38664291 GCGTCGCTAA
* * *
38664301 CTTTAGCGGCGCTTTTCCCACAAACGTCGCTAAAGACCAGGAC
1 CTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGACCATGAC
* *
38664344 CTTTAGTGGCGCTTTTCCCACAAACGCCGCTAAAGACCATGAC
1 CTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGACCATGAC
* * *
38664387 CTTTAGCGACGCTTTTATCACAAACGCCGCTAAAAACCATGAC
1 CTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGACCATGAC
*
38664430 CTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGACCAAGAC
1 CTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGACCATGAC
* * **
38664473 CTTTAGCGGCGCTTTTACCACAAACGCTGCTAAAGAACAAAAC
1 CTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGACCATGAC
*
38664516 CTTTAGCGGCACTTT
1 CTTTAGCGGCGCTTT
38664531 CTCCAAAAAC
Statistics
Matches: 171, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 171 1.00
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.23
Consensus pattern (43 bp):
CTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGACCATGAC
Found at i:38665712 original size:160 final size:160
Alignment explanation
Indices: 38665448--38665963 Score: 901
Period size: 160 Copynumber: 3.2 Consensus size: 160
38665438 AATGGAAATT
* * *
38665448 AGCACTTTAACACTTCAATTTA-AAGCATTTAAACACTTCAATTTGCAGCACTTTAACATATCAA
1 AGCACTTAAACACTTCAATTTACAA-CATTTAAACACTTAAATTTGCAGCACTTAAACATATCAA
38665512 TTAACAACATTTATACACCTCAATTACAGCGATAAAACATCTCAATTTCTAGCAACTAAACACTT
65 TTAACAACATTTATACACCTCAATTACAGCGATAAAACATCTCAATTTCTAGCAACTAAACACTT
38665577 CAATTTGCAGCACTTAAACACTTCAATTTGC
130 CAATTTGCAGCACTTAAACACTTCAATTTGC
38665608 AGCACTTAAACACTTCAATTTACAACATTTAAACACTTAAATTTGCAGCACTTAAACATATCAAT
1 AGCACTTAAACACTTCAATTTACAACATTTAAACACTTAAATTTGCAGCACTTAAACATATCAAT
* * * *
38665673 TAACAACATTTATACACCTCAATCACAACGATAAAACATCTCAATTTCCAGCAACTAAATACTTC
66 TAACAACATTTATACACCTCAATTACAGCGATAAAACATCTCAATTTCTAGCAACTAAACACTTC
38665738 AATTTGCAGCACTTAAACACTTCAATTTGC
131 AATTTGCAGCACTTAAACACTTCAATTTGC
*
38665768 AGCACTTAAACACTTTAATTTACAACATTTAAACACTTAAATTTGCAGCACTTAAACATATCAAT
1 AGCACTTAAACACTTCAATTTACAACATTTAAACACTTAAATTTGCAGCACTTAAACATATCAAT
*
38665833 TAACAACATTTATACACCTCAATTACAGCGATAAAACATTTCAATTTCTAGCAACTAAACACTTC
66 TAACAACATTTATACACCTCAATTACAGCGATAAAACATCTCAATTTCTAGCAACTAAACACTTC
38665898 AATTTGCAGCACTTAAACACTTCAATTTGC
131 AATTTGCAGCACTTAAACACTTCAATTTGC
* *
38665928 AGCACTTAAACA-TATCAATTAACAACATTTATACAC
1 AGCACTTAAACACT-TCAATTTACAACATTTAAACAC
38665964 CTCAATTACA
Statistics
Matches: 338, Mismatches: 16, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
159 1 0.00
160 335 0.99
161 2 0.01
ACGTcount: A:0.41, C:0.23, G:0.05, T:0.30
Consensus pattern (160 bp):
AGCACTTAAACACTTCAATTTACAACATTTAAACACTTAAATTTGCAGCACTTAAACATATCAAT
TAACAACATTTATACACCTCAATTACAGCGATAAAACATCTCAATTTCTAGCAACTAAACACTTC
AATTTGCAGCACTTAAACACTTCAATTTGC
Found at i:38665870 original size:114 final size:112
Alignment explanation
Indices: 38665752--38666052 Score: 444
Period size: 114 Copynumber: 2.6 Consensus size: 112
38665742 TGCAGCACTT
* * * * *
38665752 AAACACTTCAATTTGCAGC-ACTTAAACACTTTAATTTACAACATTTAAACACTTAAATTTGCAG
1 AAACA-TTCAATTT-CAGCAAC-TAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTGCAG
38665816 CACTTAAACATATCAATTAACAACATTTATACACCTCAATTACAGCGATA
63 CACTTAAACATATCAATTAACAACATTTATACACCTCAATTACAGCGATA
38665866 AAACATTTCAATTTCTAGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTGCAGC
1 AAACA-TTCAATTTC-AGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTGCAGC
38665931 ACTTAAACATATCAATTAACAACATTTATACACCTCAATTACAGCGATA
64 ACTTAAACATATCAATTAACAACATTTATACACCTCAATTACAGCGATA
* * *
38665980 AAA-ATCTCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACTTAAACACTTCAATTTACAAC
1 AAACAT-TCAATTT-CAGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTGCAGC
*
38666044 ATTTAAACA
64 ACTTAAACA
38666053 CTTAAATTTA
Statistics
Matches: 173, Mismatches: 10, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
112 1 0.01
113 63 0.36
114 107 0.62
115 2 0.01
ACGTcount: A:0.42, C:0.23, G:0.05, T:0.30
Consensus pattern (112 bp):
AAACATTCAATTTCAGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTGCAGCAC
TTAAACATATCAATTAACAACATTTATACACCTCAATTACAGCGATA
Found at i:38666065 original size:23 final size:23
Alignment explanation
Indices: 38665448--38666064 Score: 432
Period size: 23 Copynumber: 27.0 Consensus size: 23
38665438 AATGGAAATT
* *
38665448 AGCACTTTAACACTTCAATTTAA
1 AGCACTTAAACACTTCAATTTAC
* *
38665471 AGCATTTAAACACTTCAATTTGC
1 AGCACTTAAACACTTCAATTTAC
* *
38665494 AGCACTTTAACA-TATCAATTAAC
1 AGCACTTAAACACT-TCAATTTAC
* * * *
38665517 AACATTTATACACCTCAA-TTAC
1 AGCACTTAAACACTTCAATTTAC
*
38665539 AGCGA-TAAAACA-TCTCAATTT-C
1 AGC-ACTTAAACACT-TCAATTTAC
*
38665561 TAGCAAC-TAAACACTTCAATTTGC
1 -AGC-ACTTAAACACTTCAATTTAC
*
38665585 AGCACTTAAACACTTCAATTTGC
1 AGCACTTAAACACTTCAATTTAC
38665608 AGCACTTAAACACTTCAATTTAC
1 AGCACTTAAACACTTCAATTTAC
* * * *
38665631 AACATTTAAACACTTAAATTTGC
1 AGCACTTAAACACTTCAATTTAC
*
38665654 AGCACTTAAACA-TATCAATTAAC
1 AGCACTTAAACACT-TCAATTTAC
* * * * *
38665677 AACATTTATACACCTCAA-TCAC
1 AGCACTTAAACACTTCAATTTAC
* * *
38665699 AACGA-TAAAACA-TCTCAATTTCC
1 AGC-ACTTAAACACT-TCAATTTAC
* *
38665722 AGCAAC-TAAATACTTCAATTTGC
1 AGC-ACTTAAACACTTCAATTTAC
*
38665745 AGCACTTAAACACTTCAATTTGC
1 AGCACTTAAACACTTCAATTTAC
*
38665768 AGCACTTAAACACTTTAATTTAC
1 AGCACTTAAACACTTCAATTTAC
* * * *
38665791 AACATTTAAACACTTAAATTTGC
1 AGCACTTAAACACTTCAATTTAC
*
38665814 AGCACTTAAACA-TATCAATTAAC
1 AGCACTTAAACACT-TCAATTTAC
* * * *
38665837 AACATTTATACACCTCAA-TTAC
1 AGCACTTAAACACTTCAATTTAC
* *
38665859 AGCGA-TAAAACATTTCAATTT-C
1 AGC-ACTTAAACACTTCAATTTAC
*
38665881 TAGCAAC-TAAACACTTCAATTTGC
1 -AGC-ACTTAAACACTTCAATTTAC
*
38665905 AGCACTTAAACACTTCAATTTGC
1 AGCACTTAAACACTTCAATTTAC
*
38665928 AGCACTTAAACA-TATCAATTAAC
1 AGCACTTAAACACT-TCAATTTAC
* * * *
38665951 AACATTTATACACCTCAA-TTAC
1 AGCACTTAAACACTTCAATTTAC
* *
38665973 AGCGA--TAAA-AATCTCAATTTCC
1 AGC-ACTTAAACACT-TCAATTTAC
* *
38665995 AGCAAC-TAAATACTTCAATTTGC
1 AGC-ACTTAAACACTTCAATTTAC
38666018 AGCACTTAAACACTTCAATTTAC
1 AGCACTTAAACACTTCAATTTAC
* * *
38666041 AACATTTAAACACTTAAATTTAC
1 AGCACTTAAACACTTCAATTTAC
38666064 A
1 A
38666065 AATCCACCAT
Statistics
Matches: 470, Mismatches: 90, Indels: 68
0.75 0.14 0.11
Matches are distributed among these distances:
20 1 0.00
21 7 0.01
22 69 0.15
23 387 0.82
24 6 0.01
ACGTcount: A:0.41, C:0.23, G:0.05, T:0.30
Consensus pattern (23 bp):
AGCACTTAAACACTTCAATTTAC
Found at i:38669118 original size:41 final size:41
Alignment explanation
Indices: 38668998--38669119 Score: 163
Period size: 41 Copynumber: 3.0 Consensus size: 41
38668988 TCAATTCTGG
* * * *
38668998 ATTAGCGACGCTTTTTTAAAAATGCCGTTAAAGACACGAAC
1 ATTAGCGGCGCTTTTTTAAAAACGCCGCTAAAGACCCGAAC
* *
38669039 ATTAGCGGTGCTTTTTTAAAAACGCCGCTAAAGACCCGAGC
1 ATTAGCGGCGCTTTTTTAAAAACGCCGCTAAAGACCCGAAC
* * *
38669080 ATTAGCGGCGCTTTTTCAGAAACGCCGCTAAAGCCCCGAA
1 ATTAGCGGCGCTTTTTTAAAAACGCCGCTAAAGACCCGAA
38669120 ATGTCAGAAA
Statistics
Matches: 70, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 70 1.00
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (41 bp):
ATTAGCGGCGCTTTTTTAAAAACGCCGCTAAAGACCCGAAC
Found at i:38670218 original size:20 final size:20
Alignment explanation
Indices: 38670190--38670228 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
38670180 AGGCCAAAAT
38670190 AAAAATTGACATACATTTTC
1 AAAAATTGACATACATTTTC
* *
38670210 AAAATTTGACATTCATTTT
1 AAAAATTGACATACATTTT
38670229 TACTTTAAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.41, C:0.13, G:0.05, T:0.41
Consensus pattern (20 bp):
AAAAATTGACATACATTTTC
Found at i:38672775 original size:37 final size:37
Alignment explanation
Indices: 38672725--38672798 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
38672715 TCCTTTTTGG
38672725 ACATTATCTCTAATGAAATGATGTATAATCTCAATAT
1 ACATTATCTCTAATGAAATGATGTATAATCTCAATAT
38672762 ACATTATCTCTAATGAAATGATGTATAATCTCAATAT
1 ACATTATCTCTAATGAAATGATGTATAATCTCAATAT
38672799 GCTTAGTTCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.41, C:0.14, G:0.08, T:0.38
Consensus pattern (37 bp):
ACATTATCTCTAATGAAATGATGTATAATCTCAATAT
Found at i:38674122 original size:15 final size:14
Alignment explanation
Indices: 38674101--38674136 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
38674091 ATAATCCTTA
*
38674101 ATAATTATCTTAAT
1 ATAATTATCCTAAT
38674115 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
38674130 ATAATTA
1 ATAATTA
38674137 AAATAGAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:38675853 original size:22 final size:22
Alignment explanation
Indices: 38675828--38675877 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
38675818 GGTGCTTGGG
*
38675828 TGCAGGGATAAGGGT-GGTTAGC
1 TGCAGGAAT-AGGGTAGGTTAGC
* *
38675850 TGCAGGAATAGGGTAGTTTGGC
1 TGCAGGAATAGGGTAGGTTAGC
38675872 TGCAGG
1 TGCAGG
38675878 CATTCTGGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 5 0.21
22 19 0.79
ACGTcount: A:0.22, C:0.10, G:0.44, T:0.24
Consensus pattern (22 bp):
TGCAGGAATAGGGTAGGTTAGC
Found at i:38676060 original size:25 final size:27
Alignment explanation
Indices: 38676024--38676081 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 27
38676014 ATTAATATCC
*
38676024 AAAT-AAGTAATAAAT-AA-TAAAATA
1 AAATAAAGTAATAAATAAAGTAAAAAA
38676048 AAATAAAGTAATAAATAAAGTAAAAAA
1 AAATAAAGTAATAAATAAAGTAAAAAA
38676075 AAATAAA
1 AAATAAA
38676082 AATTGGGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 4 0.13
25 11 0.37
26 2 0.07
27 13 0.43
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (27 bp):
AAATAAAGTAATAAATAAAGTAAAAAA
Found at i:38682480 original size:15 final size:15
Alignment explanation
Indices: 38682460--38682497 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
38682450 AAATAATCCT
*
38682460 TAATAATTATCTTAA
1 TAATAATTATCCTAA
38682475 TAATAATTATCCTAA
1 TAATAATTATCCTAA
38682490 T-ATAATTA
1 TAATAATTA
38682498 AAATAGAGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 7 0.32
15 15 0.68
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.45
Consensus pattern (15 bp):
TAATAATTATCCTAA
Found at i:38688100 original size:7 final size:7
Alignment explanation
Indices: 38688088--38688119 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
38688078 CAAATTTTCT
38688088 AATTAAA
1 AATTAAA
38688095 AATTAAA
1 AATTAAA
38688102 AATTAAA
1 AATTAAA
38688109 AATTAAA
1 AATTAAA
38688116 AATT
1 AATT
38688120 TTATCTCTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (7 bp):
AATTAAA
Found at i:38693843 original size:260 final size:261
Alignment explanation
Indices: 38693380--38693903 Score: 960
Period size: 260 Copynumber: 2.0 Consensus size: 261
38693370 CAAAAGTTCT
*
38693380 ACTACAAGCAGTTTAACATAAATATTGATATGGTACATACTAAGCACATCAAGTATGTTTACTAT
1 ACTACAAGCAGTTTAACATAAATATTGATATGGTAAATACTAAGCACATCAAGTATGTTTACTAT
*
38693445 GATCATTTACACGAGTGCATATTTATATTTATTCTGTGCTTTTTGGCATTCCAATAAATGATTAA
66 GATCATTTACACGACTGCATATTTATATTTA-TCTGTGCTTTTTGGCATTCCAATAAATGATTAA
*
38693510 TGAGCGACTTAAAAACTAATATTTACTTTGAGGTCCATGTTAGTCATCGTCTCTTTGGTTTTTTG
130 TGAGCCACTTAAAAACTAATATTTACTTTGAGGTCCATGTTAGTCATCGTCTCTTTGGTTTTTTG
* *
38693575 CTAGCATAAATATTAAAGGACTGGCACCTTTAAGGAAACACAAGTTCCCCACCAGTAGGCTATTA
195 CTAGCATAAATATCAAAGGACTGGCACCTTTAAGGAAACACAAGTTCCCCACCAGCAGGCTATTA
38693640 AA
260 AA
* *
38693642 ACTACAAGCAGTTTAACATAAATATTGATATGGTAAATACTAAGCCCATGAAGTATGTTTACTAT
1 ACTACAAGCAGTTTAACATAAATATTGATATGGTAAATACTAAGCACATCAAGTATGTTTACTAT
*
38693707 GATCATTTACATGACTGCATATTTATATTTA-CTGTGCTTTTTGGCATTCCAATAAATGATTAAT
66 GATCATTTACACGACTGCATATTTATATTTATCTGTGCTTTTTGGCATTCCAATAAATGATTAAT
38693771 GAGCCACTTAAAAACTAATATTTACTTTGAGGTCCATGTTAGTCATCGTCTCTTTGGTTTTTTGC
131 GAGCCACTTAAAAACTAATATTTACTTTGAGGTCCATGTTAGTCATCGTCTCTTTGGTTTTTTGC
38693836 TAGCATAAATATCAAAGGACTGGCACCTTTAAGGAAACACAAGTTCCCCACCAGCAGGCTATTAA
196 TAGCATAAATATCAAAGGACTGGCACCTTTAAGGAAACACAAGTTCCCCACCAGCAGGCTATTAA
38693901 A
261 A
38693902 AC
1 AC
38693904 CATCCATCAC
Statistics
Matches: 254, Mismatches: 8, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
260 163 0.64
262 91 0.36
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (261 bp):
ACTACAAGCAGTTTAACATAAATATTGATATGGTAAATACTAAGCACATCAAGTATGTTTACTAT
GATCATTTACACGACTGCATATTTATATTTATCTGTGCTTTTTGGCATTCCAATAAATGATTAAT
GAGCCACTTAAAAACTAATATTTACTTTGAGGTCCATGTTAGTCATCGTCTCTTTGGTTTTTTGC
TAGCATAAATATCAAAGGACTGGCACCTTTAAGGAAACACAAGTTCCCCACCAGCAGGCTATTAA
A
Found at i:38694518 original size:30 final size:30
Alignment explanation
Indices: 38694484--38694540 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
38694474 CAACCACCTT
38694484 TTGTTTACTCTCTATGCTCAACCTTGAAGG
1 TTGTTTACTCTCTATGCTCAACCTTGAAGG
*
38694514 TTGTTTACTCTCTATGCTCAATCTTGA
1 TTGTTTACTCTCTATGCTCAACCTTGA
38694541 TGGCTCTTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.19, C:0.23, G:0.14, T:0.44
Consensus pattern (30 bp):
TTGTTTACTCTCTATGCTCAACCTTGAAGG
Found at i:38702063 original size:24 final size:24
Alignment explanation
Indices: 38702000--38702051 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
38701990 TTTCTAGAAG
* * *
38702000 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
38702024 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATTAGCATAATAT
38702048 ATTT
1 ATTT
38702052 GACTTTGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:38706424 original size:24 final size:24
Alignment explanation
Indices: 38706390--38706441 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
38706380 TTTTTAGAAG
* **
38706390 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATGAACATAATAT
*
38706414 ATTTAGCATTTATTAACATAATAT
1 ATTTAGCATTTATGAACATAATAT
38706438 ATTT
1 ATTT
38706442 GAATTTGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.04, G:0.08, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATGAACATAATAT
Found at i:38706452 original size:24 final size:24
Alignment explanation
Indices: 38706407--38706452 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
38706397 ATTTATGAGT
*
38706407 ATAATATATTTAGCATTTATTAAC
1 ATAATATATTTAGAATTTATTAAC
38706431 ATAATATATTT-GAATTTGATTA
1 ATAATATATTTAGAATTT-ATTA
38706453 GAATTAGGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.41, C:0.04, G:0.07, T:0.48
Consensus pattern (24 bp):
ATAATATATTTAGAATTTATTAAC
Found at i:38711555 original size:18 final size:18
Alignment explanation
Indices: 38711532--38711573 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
38711522 CTACTAAAAA
38711532 TCACAAGAAAACAATCAT
1 TCACAAGAAAACAATCAT
*
38711550 TCACAAGAAAGCAATCAT
1 TCACAAGAAAACAATCAT
*
38711568 GCACAA
1 TCACAA
38711574 AAGAAACTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.52, C:0.24, G:0.10, T:0.14
Consensus pattern (18 bp):
TCACAAGAAAACAATCAT
Found at i:38716116 original size:24 final size:24
Alignment explanation
Indices: 38716084--38716146 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
38716074 CAAAACTCAT
38716084 ACCAGATCATAATATTACACCGGG
1 ACCAGATCATAATATTACACCGGG
38716108 ACCAGATCATAATATTACACCGGG
1 ACCAGATCATAATATTACACCGGG
38716132 ACCAGATCATAATAT
1 ACCAGATCATAATAT
38716147 AATAGATATC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.40, C:0.24, G:0.14, T:0.22
Consensus pattern (24 bp):
ACCAGATCATAATATTACACCGGG
Found at i:38721845 original size:14 final size:15
Alignment explanation
Indices: 38721816--38721845 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
38721806 TGTGAAGAAA
38721816 TATTTTTCTTCTCCT
1 TATTTTTCTTCTCCT
38721831 TATTTTTCTTC-CCT
1 TATTTTTCTTCTCCT
38721845 T
1 T
38721846 GGTTGAATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.07, C:0.27, G:0.00, T:0.67
Consensus pattern (15 bp):
TATTTTTCTTCTCCT
Found at i:38722639 original size:48 final size:48
Alignment explanation
Indices: 38722544--38722642 Score: 112
Period size: 48 Copynumber: 2.1 Consensus size: 48
38722534 AAAGTAGAAG
* * *
38722544 TATGTGGCAGTTTATCTGCATTAATGTGACATTGTTCACGATTTTGAT
1 TATGTGGCAGTATATCTGCATTAATGTGACATTGTCCACGATATTGAT
* * *
38722592 TATGTGGCAGTATATCTGCGATT-TTGGTGGC-TTGTCCATGATATTGAT
1 TATGTGGCAGTATATCTGC-ATTAAT-GTGACATTGTCCACGATATTGAT
38722640 TAT
1 TAT
38722643 TAGTAATTTA
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
48 36 0.84
49 7 0.16
ACGTcount: A:0.21, C:0.12, G:0.23, T:0.43
Consensus pattern (48 bp):
TATGTGGCAGTATATCTGCATTAATGTGACATTGTCCACGATATTGAT
Found at i:38724821 original size:20 final size:19
Alignment explanation
Indices: 38724796--38724852 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 19
38724786 TTGTACAGGA
38724796 TTGCACTTCGATGTCTCTGT
1 TTGCACTTCGATG-CTCTGT
38724816 TTGCACTTC-AGTGCCTCTGT
1 TTGCACTTCGA-TG-CTCTGT
* *
38724836 TAGCATTTCGATGCTCT
1 TTGCACTTCGATGCTCT
38724853 TTGGTGTGTT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
19 5 0.16
20 26 0.81
21 1 0.03
ACGTcount: A:0.12, C:0.26, G:0.19, T:0.42
Consensus pattern (19 bp):
TTGCACTTCGATGCTCTGT
Found at i:38740043 original size:3 final size:3
Alignment explanation
Indices: 38740035--38740062 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
38740025 ACTGCAAATG
38740035 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
38740063 GAGAAGCTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:38749428 original size:15 final size:13
Alignment explanation
Indices: 38749387--38749429 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 13
38749377 TGGTCCTTTA
38749387 GAATAATTTTTTTT
1 GAATAA-TTTTTTT
38749401 GACATAATTTTTTT
1 GA-ATAATTTTTTT
38749415 GAATATATTGTTTTT
1 GAATA-ATT-TTTTT
38749430 CACTTATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
13 3 0.12
14 14 0.54
15 9 0.35
ACGTcount: A:0.28, C:0.02, G:0.09, T:0.60
Consensus pattern (13 bp):
GAATAATTTTTTT
Found at i:38750001 original size:27 final size:27
Alignment explanation
Indices: 38749959--38750014 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
38749949 GTCTGTGTGG
*
38749959 TAGGTGCCACTAGTGACTCCTACCTGA
1 TAGGCGCCACTAGTGACTCCTACCTGA
*
38749986 TAGGCGCCACTGGTGACTCCTACCTGA
1 TAGGCGCCACTAGTGACTCCTACCTGA
38750013 TA
1 TA
38750015 AGCGGCACCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.21, C:0.30, G:0.23, T:0.25
Consensus pattern (27 bp):
TAGGCGCCACTAGTGACTCCTACCTGA
Found at i:38753122 original size:85 final size:85
Alignment explanation
Indices: 38752980--38753216 Score: 334
Period size: 85 Copynumber: 2.8 Consensus size: 85
38752970 TCCGTTACTT
* * * *
38752980 GGTGGATTCAACACTTAGCAACCACC-TTAAATTTAGTGATATGGGGAATCAGCACATAGCAACC
1 GGTGGAATCAGCACTTAGCAACCACCTTTAAATTCAGTGATACGGGGAATCAGCACATAGCAACC
*
38753044 CCTTTCACAATCAAAGATAC
66 CCTTTCACAATCAAAGATAA
* *
38753064 GGTGGAATCAGCACTTAGCCACCACCTTTATATTCAGTGATACGGGGAATCAGCACATAGCAACC
1 GGTGGAATCAGCACTTAGCAACCACCTTTAAATTCAGTGATACGGGGAATCAGCACATAGCAACC
*
38753129 CCTTTCACAATCAAATATAA
66 CCTTTCACAATCAAAGATAA
* * * * *
38753149 GGTGGAATCAGCACTTAGCAACCACCTTTAGAA-TCAATAATTCGGGGAATCAGCACTTAGAAAC
1 GGTGGAATCAGCACTTAGCAACCACCTTTA-AATTCAGTGATACGGGGAATCAGCACATAGCAAC
38753213 CCCT
65 CCCT
38753217 AGGGGAATCT
Statistics
Matches: 136, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
84 23 0.17
85 112 0.82
86 1 0.01
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (85 bp):
GGTGGAATCAGCACTTAGCAACCACCTTTAAATTCAGTGATACGGGGAATCAGCACATAGCAACC
CCTTTCACAATCAAAGATAA
Found at i:38753207 original size:42 final size:42
Alignment explanation
Indices: 38753017--38753216 Score: 217
Period size: 43 Copynumber: 4.7 Consensus size: 42
38753007 TAAATTTAGT
* *
38753017 GATATGGGGAATCAGCACATAGCAACCCCTTTCACAATCAAA
1 GATACGGGGAATCAGCACTTAGCAACCCCTTTCACAATCAAA
* * * **
38753059 GATACGGTGGAATCAGCACTTAGCCACCACCTTT-ATATTCAGT
1 GATACGG-GGAATCAGCACTTAGCAACC-CCTTTCACAATCAAA
*
38753102 GATACGGGGAATCAGCACATAGCAACCCCTTTCACAATCAAA
1 GATACGGGGAATCAGCACTTAGCAACCCCTTTCACAATCAAA
* * *
38753144 TATAAGGTGGAATCAGCACTTAGCAACCACCTTT-AGAATCAATA
1 GATACGG-GGAATCAGCACTTAGCAACC-CCTTTCACAATCAA-A
* *
38753188 -ATTCGGGGAATCAGCACTTAGAAACCCCT
1 GATACGGGGAATCAGCACTTAGCAACCCCT
38753217 AGGGGAATCT
Statistics
Matches: 132, Mismatches: 20, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
41 8 0.06
42 53 0.40
43 60 0.45
44 11 0.08
ACGTcount: A:0.35, C:0.26, G:0.17, T:0.22
Consensus pattern (42 bp):
GATACGGGGAATCAGCACTTAGCAACCCCTTTCACAATCAAA
Found at i:38755787 original size:78 final size:77
Alignment explanation
Indices: 38755548--38755777 Score: 322
Period size: 76 Copynumber: 3.0 Consensus size: 77
38755538 TTACGTAAAT
* * * * * *
38755548 AATACAAAGTTTATTATTTAAATTGC-AAAAAAATCC-TAAAATTAATAACTGAAATAGAGAAAA
1 AATACAAAGTTGACTATTTAAATTGCAAAAAAAACCCATAAAATTAATAACTAAAATGGAAAAAA
*
38755611 ATTCATTACATA
66 AGTCATTACATA
*
38755623 AATACAAAGTTGACTATTTAAATTG-AAAAAAAACCCATAAAATTAATAACTAAAATGGCAAAAA
1 AATACAAAGTTGACTATTTAAATTGCAAAAAAAACCCATAAAATTAATAACTAAAATGGAAAAAA
*
38755687 AGTCATTACACA
66 AGTCATTACATA
* *
38755699 AATACAAAGTTGACTATTTAAATTGCAAAAAAAAACCCATAAAATTAAGAACTCAAATGGAAAAA
1 AATACAAAGTTGACTATTTAAATTGC-AAAAAAAACCCATAAAATTAATAACTAAAATGGAAAAA
*
38755764 AAGTCATTATATA
65 AAGTCATTACATA
38755777 A
1 A
38755778 GTATGAAGTT
Statistics
Matches: 137, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
75 32 0.23
76 58 0.42
78 47 0.34
ACGTcount: A:0.55, C:0.11, G:0.08, T:0.26
Consensus pattern (77 bp):
AATACAAAGTTGACTATTTAAATTGCAAAAAAAACCCATAAAATTAATAACTAAAATGGAAAAAA
AGTCATTACATA
Found at i:38756100 original size:33 final size:33
Alignment explanation
Indices: 38755994--38756088 Score: 147
Period size: 33 Copynumber: 2.9 Consensus size: 33
38755984 AGAGTACAGT
38755994 GGTGGATATGGGCCGAGAA-GAGTGGAGTATGGC
1 GGTGGATATGGGCCG-GAAGGAGTGGAGTATGGC
* *
38756027 GGTGGATACGGGCCGGGAGGAGTGGAGTATGGC
1 GGTGGATATGGGCCGGAAGGAGTGGAGTATGGC
*
38756060 GGTGGATATTGGCCGGAAGGAGTGGAGTA
1 GGTGGATATGGGCCGGAAGGAGTGGAGTA
38756089 CTGAGGTGGA
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
32 2 0.04
33 54 0.96
ACGTcount: A:0.22, C:0.09, G:0.51, T:0.18
Consensus pattern (33 bp):
GGTGGATATGGGCCGGAAGGAGTGGAGTATGGC
Found at i:38756121 original size:66 final size:66
Alignment explanation
Indices: 38755994--38756121 Score: 161
Period size: 66 Copynumber: 1.9 Consensus size: 66
38755984 AGAGTACAGT
* * * * *
38755994 GGTGGATATGGGCCGAGAAGAGTGGAGTATGGCGGTGGATACGGGCCGGGAGGAGTGGAGTATGG
1 GGTGGATATGGGCCGAGAAGAGTGGAGTATGGAGGTGGATACGAGACGGGAGGACTAGAGTATGG
38756059 C
66 C
* *
38756060 GGTGGATATTGGCCG-GAAGGAGTGGAGTACT-GAGGTGGATACGAGACGGGATGACTAGAGTA
1 GGTGGATATGGGCCGAGAA-GAGTGGAGTA-TGGAGGTGGATACGAGACGGGAGGACTAGAGTA
38756122 CTGAGGTGGT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
65 3 0.06
66 49 0.92
67 1 0.02
ACGTcount: A:0.24, C:0.10, G:0.48, T:0.18
Consensus pattern (66 bp):
GGTGGATATGGGCCGAGAAGAGTGGAGTATGGAGGTGGATACGAGACGGGAGGACTAGAGTATGG
C
Found at i:38756130 original size:66 final size:66
Alignment explanation
Indices: 38755983--38756138 Score: 158
Period size: 66 Copynumber: 2.4 Consensus size: 66
38755973 CTGGGAATAG
* * * * *
38755983 TAGAGTACAGTGGTGGATATGGGCCGAGAAGAGTGGAGTATGGCGGTGGATACGGGCCGGGAGGA
1 TAGAGTACTGAGGTGGATATGGGCCGAGAAGAGTGGAGTATGGAGGTGGATACGAGACGGGAGGA
*
38756048 G
66 C
* * *
38756049 TGGAGTA-TGGCGGTGGATATTGGCCG-GAAGGAGTGGAGTACT-GAGGTGGATACGAGACGGGA
1 TAGAGTACT-GAGGTGGATATGGGCCGAGAA-GAGTGGAGTA-TGGAGGTGGATACGAGACGGGA
*
38756111 TGAC
63 GGAC
38756115 TAGAGTACTGAGGTGG-TAGTGGGC
1 TAGAGTACTGAGGTGGATA-TGGGC
38756139 TAAAGATATC
Statistics
Matches: 73, Mismatches: 12, Indels: 10
0.77 0.13 0.11
Matches are distributed among these distances:
65 5 0.07
66 66 0.90
67 2 0.03
ACGTcount: A:0.24, C:0.10, G:0.47, T:0.19
Consensus pattern (66 bp):
TAGAGTACTGAGGTGGATATGGGCCGAGAAGAGTGGAGTATGGAGGTGGATACGAGACGGGAGGA
C
Found at i:38756590 original size:17 final size:18
Alignment explanation
Indices: 38756549--38756590 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
38756539 TGCAAAAGTT
*
38756549 GAATTCTAGTAGCTATAG
1 GAATTCAAGTAGCTATAG
*
38756567 GTA-TCAAGTAGCTAT-G
1 GAATTCAAGTAGCTATAG
38756583 GAATTCAA
1 GAATTCAA
38756591 AATTGGAGGT
Statistics
Matches: 20, Mismatches: 3, Indels: 3
0.77 0.12 0.12
Matches are distributed among these distances:
16 3 0.15
17 15 0.75
18 2 0.10
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (18 bp):
GAATTCAAGTAGCTATAG
Found at i:38756711 original size:13 final size:13
Alignment explanation
Indices: 38756693--38756720 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
38756683 ACAAAATTGG
38756693 AAAGATGAAAAAT
1 AAAGATGAAAAAT
38756706 AAAGATGAAAAAT
1 AAAGATGAAAAAT
38756719 AA
1 AA
38756721 TAAAATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (13 bp):
AAAGATGAAAAAT
Found at i:38757760 original size:26 final size:26
Alignment explanation
Indices: 38757738--38757797 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
38757728 GTCCCGATAT
38757738 ATGGCTCTTCGTGAGCTTTCCGATTA
1 ATGGCTCTTCGTGAGCTTTCCGATTA
* *
38757764 AAGGCTCTTTGTGAGC-TTCCTGATTA
1 ATGGCTCTTCGTGAGCTTTCC-GATTA
38757790 ATGGCTCT
1 ATGGCTCT
38757798 CCAGAGCTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
25 4 0.13
26 26 0.87
ACGTcount: A:0.17, C:0.22, G:0.23, T:0.38
Consensus pattern (26 bp):
ATGGCTCTTCGTGAGCTTTCCGATTA
Found at i:38757830 original size:23 final size:24
Alignment explanation
Indices: 38757804--38757856 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
38757794 CTCTCCAGAG
*
38757804 CTTCCCGAT-ATGGCTCGCTGGAA
1 CTTCCCGATAATGGCTAGCTGGAA
* *
38757827 CTTCTCGATACATGGCTATCTGGAA
1 CTTCCCGATA-ATGGCTAGCTGGAA
38757852 CTTCC
1 CTTCC
38757857 TGTTTAATGG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
23 8 0.33
25 16 0.67
ACGTcount: A:0.19, C:0.30, G:0.21, T:0.30
Consensus pattern (24 bp):
CTTCCCGATAATGGCTAGCTGGAA
Found at i:38760395 original size:23 final size:25
Alignment explanation
Indices: 38760346--38760404 Score: 95
Period size: 26 Copynumber: 2.4 Consensus size: 25
38760336 AATAAAAATA
38760346 ACCAAAATATTATAACTTTTTTATTT
1 ACCAAAATATTATAAC-TTTTTATTT
38760372 ACCAAAATATTATAA-TTTTT-TTT
1 ACCAAAATATTATAACTTTTTATTT
38760395 ACCAAAATAT
1 ACCAAAATAT
38760405 ACCGAAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
23 13 0.39
24 5 0.15
26 15 0.45
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.46
Consensus pattern (25 bp):
ACCAAAATATTATAACTTTTTATTT
Found at i:38760492 original size:27 final size:27
Alignment explanation
Indices: 38760462--38760540 Score: 113
Period size: 27 Copynumber: 2.9 Consensus size: 27
38760452 CACCCTAGTC
* *
38760462 GTGCCAAGGTGATTGGCGGCACTAAAG
1 GTGCCAAAGTGATTGGCGGCACCAAAG
*
38760489 GTGCCAAAGTGATTGGCTGCACCAAAG
1 GTGCCAAAGTGATTGGCGGCACCAAAG
**
38760516 GTGCCAAAGACATTGGCGGCACCAA
1 GTGCCAAAGTGATTGGCGGCACCAA
38760541 TGTTATAATA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.29, C:0.23, G:0.32, T:0.16
Consensus pattern (27 bp):
GTGCCAAAGTGATTGGCGGCACCAAAG
Found at i:38760593 original size:4 final size:4
Alignment explanation
Indices: 38760584--38760732 Score: 123
Period size: 4 Copynumber: 37.0 Consensus size: 4
38760574 GAAGGAGAGG
38760584 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA
* *** *
38760632 GAAA G-AA -AAA GAAG GAAA GAAA GGAAA TGAGAA GGGG GAAAA AAAA
1 GAAA GAAA GAAA GAAA GAAA GAAA -GAAA -GA-AA GAAA G-AAA GAAA
38760678 GAAA G-AA G-AA GAAGA GGAAA TGAGAA GAAA -AAA GAAA G-AA -AAA
1 GAAA GAAA GAAA GAA-A -GAAA -GA-AA GAAA GAAA GAAA GAAA GAAA
*
38760721 GAAG GAAA GAAA
1 GAAA GAAA GAAA
38760733 AGGAAAGGAG
Statistics
Matches: 119, Mismatches: 14, Indels: 24
0.76 0.09 0.15
Matches are distributed among these distances:
3 17 0.14
4 82 0.69
5 13 0.11
6 7 0.06
ACGTcount: A:0.70, C:0.00, G:0.29, T:0.01
Consensus pattern (4 bp):
GAAA
Found at i:38760719 original size:46 final size:46
Alignment explanation
Indices: 38760586--38760739 Score: 81
Period size: 46 Copynumber: 3.4 Consensus size: 46
38760576 AGGAGAGGGA
*
38760586 AAGAAAGAAAGAAAGAAAGAAAG-AAA-GAAA-GA-AAGA-AAGAAAGA
1 AAGAAAG-AA-AAAGAAAGAAAGAAAAGGAAAGGAGAAGAGAA-AAAAA
* * * *
38760630 AAGAAAGAAAAAGAAGGAAAG-AAAGGAAATGAGAAGGGGGAAAAAA
1 AAGAAAGAAAAAGAAAGAAAGAAAAGGAAAGGAGAA-GAGAAAAAAA
* * ** *
38760676 AAGAAAGAAGAAGAAGAGGAAATGAGAA-GAAAAAAGAA-AGAAAAAGA
1 AAGAAAGAAAAAGAA-A-GAAA-GAAAAGGAAAGGAGAAGAGAAAAAAA
* *
38760723 AGGAAAGAAAAGGAAAG
1 AAGAAAGAAAAAGAAAG
38760740 GAGAAGAGAA
Statistics
Matches: 86, Mismatches: 15, Indels: 17
0.73 0.13 0.14
Matches are distributed among these distances:
42 14 0.16
43 6 0.07
44 9 0.10
45 3 0.03
46 20 0.23
47 19 0.22
48 4 0.05
49 9 0.10
50 2 0.02
ACGTcount: A:0.69, C:0.00, G:0.29, T:0.01
Consensus pattern (46 bp):
AAGAAAGAAAAAGAAAGAAAGAAAAGGAAAGGAGAAGAGAAAAAAA
Found at i:38760749 original size:46 final size:46
Alignment explanation
Indices: 38760669--38760758 Score: 114
Period size: 46 Copynumber: 2.0 Consensus size: 46
38760659 TGAGAAGGGG
*
38760669 GAAAAAAAAGAAAGAAGAAGAAGAGGAAATGAGAAGAAAAAAGAAA
1 GAAAAAAAAGAAAGAAGAAGAAGAGGAAATGAGAAAAAAAAAGAAA
*
38760715 GAAAAAGAAGGAAAGAA-AAGGAA-AGGAGAA-GAGAAAAAAAAAGA
1 GAAAAA-AAAGAAAGAAGAA-GAAGAGGA-AATGAGAAAAAAAAAGA
38760759 GGAAGAAGAG
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
46 25 0.64
47 14 0.36
ACGTcount: A:0.71, C:0.00, G:0.28, T:0.01
Consensus pattern (46 bp):
GAAAAAAAAGAAAGAAGAAGAAGAGGAAATGAGAAAAAAAAAGAAA
Found at i:38760763 original size:18 final size:18
Alignment explanation
Indices: 38760710--38760764 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
38760700 AGAAGAAAAA
*
38760710 AGAAAGAAAAAGAAGGAA-
1 AGAAAAAAAAAG-AGGAAG
**
38760728 AGAAAAGGAAAG-GAGAAG
1 AGAAAAAAAAAGAG-GAAG
38760746 AGAAAAAAAAAGAGGAAG
1 AGAAAAAAAAAGAGGAAG
38760764 A
1 A
38760765 AGAGGGAAGG
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
16 1 0.03
17 3 0.10
18 24 0.83
19 1 0.03
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (18 bp):
AGAAAAAAAAAGAGGAAG
Found at i:38760764 original size:75 final size:74
Alignment explanation
Indices: 38760597--38760796 Score: 219
Period size: 75 Copynumber: 2.6 Consensus size: 74
38760587 AGAAAGAAAG
* *
38760597 AAAGAAAGAAAGAAAGAA-A-GAAAGAAAGAAAGAAAGAAAGAAAAAGAAGGAAAGAAAGGAAAT
1 AAAGAAAG-AAG-AAGAAGAGGAAAGGAAGAAA-AAAGAAAGAAAAAGAAGGAAAGAAAGGAAAG
38760660 GAGAAGGGGGAAAAA
63 GAGAA---GGAAAAA
38760675 AAAGAAAGAAGAAGAAGAGGAAATGAGAAGAAAAAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAG
1 AAAGAAAGAAGAAGAAGAGGAAA-G-GAAGAAAAAAGAAAGAAAAAGAAGGAAAG-AAAGGAAAG
*
38760740 GAGAA-GAGAAA
63 GAGAAGGAAAAA
* * *
38760751 AAA-AAAGAGGAAGAAGAGGGAAGGAAGGAAAAAAAGAAAAAAAAAG
1 AAAGAAAGAAGAAGAAGAGGAAAGGAA-G-AAAAAAGAAAGAAAAAG
38760797 GTAATTTTTA
Statistics
Matches: 109, Mismatches: 6, Indels: 17
0.83 0.05 0.13
Matches are distributed among these distances:
73 3 0.03
74 2 0.02
75 33 0.30
76 13 0.12
77 4 0.04
78 12 0.11
79 23 0.21
80 19 0.17
ACGTcount: A:0.69, C:0.00, G:0.30, T:0.01
Consensus pattern (74 bp):
AAAGAAAGAAGAAGAAGAGGAAAGGAAGAAAAAAGAAAGAAAAAGAAGGAAAGAAAGGAAAGGAG
AAGGAAAAA
Found at i:38760766 original size:42 final size:41
Alignment explanation
Indices: 38760597--38760758 Score: 158
Period size: 42 Copynumber: 4.0 Consensus size: 41
38760587 AGAAAGAAAG
* *
38760597 AAAGAAAGAAAGAAA-GAAAGAAAGAA-AGAAAGAAAGAAAGAA
1 AAAGAAGGAAAGAAAGGAAAG-GAGAAGAGAAA-AAA-AAAGAA
* * *
38760639 AAAGAAGGAAAGAAAGGAAATGAGAAGGGGGAAAAAAAAG--
1 AAAGAAGGAAAGAAAGGAAAGGAGAA-GAGAAAAAAAAAGAA
* *
38760679 AAAGAA-G-AAGAAGAGGAAATGAGAAGA-AAAAAGAAAGAA
1 AAAGAAGGAAAGAA-AGGAAAGGAGAAGAGAAAAAAAAAGAA
38760718 AAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAAAAAGA
1 AAAGAAGGAAAG-AAAGGAAAGGAGAAGAGAAAAAAAAAGA
38760759 GGAAGAAGAG
Statistics
Matches: 100, Mismatches: 10, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
37 8 0.08
38 6 0.06
39 19 0.19
40 7 0.07
41 16 0.16
42 34 0.34
43 7 0.07
44 3 0.03
ACGTcount: A:0.70, C:0.00, G:0.29, T:0.01
Consensus pattern (41 bp):
AAAGAAGGAAAGAAAGGAAAGGAGAAGAGAAAAAAAAAGAA
Found at i:38761544 original size:27 final size:27
Alignment explanation
Indices: 38761514--38761569 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
38761504 AAAGAGGGTG
* *
38761514 ATGGAGGGGAATAAAAAGGCGGCACCA
1 ATGGAGAGGAATAAAAAGGCAGCACCA
38761541 ATGGAGAGGAATAAAAAGGCAGCACCA
1 ATGGAGAGGAATAAAAAGGCAGCACCA
38761568 AT
1 AT
38761570 ATGTGGCTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.45, C:0.14, G:0.32, T:0.09
Consensus pattern (27 bp):
ATGGAGAGGAATAAAAAGGCAGCACCA
Found at i:38763056 original size:7 final size:7
Alignment explanation
Indices: 38763044--38763068 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
38763034 TAATATATTG
38763044 CCTAAAC
1 CCTAAAC
38763051 CCTAAAC
1 CCTAAAC
38763058 CCTAAAC
1 CCTAAAC
38763065 CCTA
1 CCTA
38763069 TATTTTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.40, C:0.44, G:0.00, T:0.16
Consensus pattern (7 bp):
CCTAAAC
Found at i:38766514 original size:18 final size:18
Alignment explanation
Indices: 38766491--38766535 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
38766481 ATCCCAATGA
38766491 TCGCCACCACCTTCTTCT
1 TCGCCACCACCTTCTTCT
*
38766509 TCGCCACCATCTTCTTCT
1 TCGCCACCACCTTCTTCT
*
38766527 TCACCACCA
1 TCGCCACCA
38766536 ACCATATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.16, C:0.49, G:0.04, T:0.31
Consensus pattern (18 bp):
TCGCCACCACCTTCTTCT
Found at i:38767377 original size:3 final size:3
Alignment explanation
Indices: 38767359--38767420 Score: 106
Period size: 3 Copynumber: 20.7 Consensus size: 3
38767349 CATAACATCT
* *
38767359 TAA TAC TAA CAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
38767407 TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TA
38767421 CTACTAACTA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:38767506 original size:19 final size:21
Alignment explanation
Indices: 38767479--38767517 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
38767469 ACTAAAACAA
*
38767479 AAAATAAT-ACAA-AATATAC
1 AAAACAATAACAACAATATAC
38767498 AAAACAATAACAACAATATA
1 AAAACAATAACAACAATATA
38767518 ATCAATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 4 0.24
21 6 0.35
ACGTcount: A:0.69, C:0.13, G:0.00, T:0.18
Consensus pattern (21 bp):
AAAACAATAACAACAATATAC
Found at i:38767700 original size:27 final size:27
Alignment explanation
Indices: 38767670--38767729 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
38767660 CCAATCAGTA
*
38767670 TGGCACCATTGGTGCCACCAATAACTT
1 TGGCACCATTGGTGCCACCAATAACCT
* * *
38767697 TGGCACCTTTGGTGCCGCCAATCACCT
1 TGGCACCATTGGTGCCACCAATAACCT
38767724 TGGCAC
1 TGGCAC
38767730 GACCAGGGTG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.20, C:0.33, G:0.22, T:0.25
Consensus pattern (27 bp):
TGGCACCATTGGTGCCACCAATAACCT
Found at i:38767873 original size:28 final size:28
Alignment explanation
Indices: 38767787--38767878 Score: 161
Period size: 28 Copynumber: 3.4 Consensus size: 28
38767777 TTTTTTGGGT
38767787 ATATTTTGGTAAAT-AAAAAAA-TTATA
1 ATATTTTGGTAAATAAAAAAAAGTTATA
*
38767813 ATATATTGGTAAATAAAAAAAAGTTATA
1 ATATTTTGGTAAATAAAAAAAAGTTATA
38767841 ATATTTTGGTAAATAAAAAAAAGTTATA
1 ATATTTTGGTAAATAAAAAAAAGTTATA
38767869 ATATTTTGGT
1 ATATTTTGGT
38767879 TATTTTTATT
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
26 13 0.21
27 7 0.11
28 42 0.68
ACGTcount: A:0.51, C:0.00, G:0.11, T:0.38
Consensus pattern (28 bp):
ATATTTTGGTAAATAAAAAAAAGTTATA
Found at i:38769165 original size:105 final size:104
Alignment explanation
Indices: 38768901--38769333 Score: 543
Period size: 104 Copynumber: 4.2 Consensus size: 104
38768891 TAAATTAAAT
*
38768901 TAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAACATAATCATAAATTACTAAC
1 TAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAACCTAATCATAAATTACTAAC
*
38768966 AAAATAACTAT-AAATTATTTTTTTTTAAAA-TACATTAC
66 AAAATAACTATAAAATTA-TTTTTTTAAAAATTACATTAC
38769004 TAAAAAATCACAAAAACACTAAACTAAAC-CTTAACAATTTATATAACCTAATCATAAATTACTA
1 TAAAAAATCAC-AAAACACTAAACTAAACAC-TAACAATTTATATAACCTAATCATAAATTACTA
*
38769068 ACAAAATAACTATAAAATTATTTTTTTTAAAATTACATTAC
64 ACAAAATAACTATAAAATTATTTTTTTAAAAATTACATTAC
* *
38769109 TAAAAAAATCACAAAACCCTAAACTAAACACTAATAA-TT-TATAACCTAATCCCATAAATTACT
1 T-AAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAACCTAAT--CATAAATTACT
* **
38769172 AACAAAATAAATAATTATAACATT-TTTTTAAAAATAAATTACATTAC
63 AACAAAATAACT-A-TA-AA-ATTATTTTT-TTAA-AAATTACATTAC
* * *
38769219 TAAAAAATAACAAAAGAC---A--AAACACTAACAA-TT-TATAACCTAATCATAAACTACTAAC
1 TAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAACCTAATCATAAATTACTAAC
38769277 AAAATAACTATAAAATTA-TTTTTTAAAAATTTACATTAC
66 AAAATAACTATAAAATTATTTTTTTAAAAA-TTACATTAC
*
38769316 TAAAAACTCACAAAACAC
1 TAAAAAATCACAAAACAC
38769334 AACAATTTAT
Statistics
Matches: 296, Mismatches: 18, Indels: 38
0.84 0.05 0.11
Matches are distributed among these distances:
96 3 0.01
97 26 0.09
98 7 0.02
99 2 0.01
100 2 0.01
101 1 0.00
102 21 0.07
103 23 0.08
104 100 0.34
105 58 0.20
106 13 0.04
107 2 0.01
108 7 0.02
109 18 0.06
110 13 0.04
ACGTcount: A:0.54, C:0.16, G:0.00, T:0.30
Consensus pattern (104 bp):
TAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAACCTAATCATAAATTACTAAC
AAAATAACTATAAAATTATTTTTTTAAAAATTACATTAC
Found at i:38769382 original size:72 final size:72
Alignment explanation
Indices: 38769306--38769470 Score: 294
Period size: 72 Copynumber: 2.3 Consensus size: 72
38769296 TTTTTAAAAA
* *
38769306 TTTACATTACTAAAAACTCACAAAACACAACAATTTATAATAAATCGCTAACAAAATATTTAACA
1 TTTACATTACTAAAAACTCACAAAACACAACAACTTATAATAAATCACTAACAAAATATTTAACA
38769371 AAATAAT
66 AAATAAT
*
38769378 TTTACATTACTAAAAACTCACAAAACACAACAACTTATAATAAATTACTAACAAAATATTTAACA
1 TTTACATTACTAAAAACTCACAAAACACAACAACTTATAATAAATCACTAACAAAATATTTAACA
38769443 AAATAAT
66 AAATAAT
*
38769450 TTTACATTACTAAAAAATCAC
1 TTTACATTACTAAAAACTCAC
38769471 CAAATACTAA
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
72 89 1.00
ACGTcount: A:0.54, C:0.17, G:0.01, T:0.28
Consensus pattern (72 bp):
TTTACATTACTAAAAACTCACAAAACACAACAACTTATAATAAATCACTAACAAAATATTTAACA
AAATAAT
Found at i:38769734 original size:3 final size:3
Alignment explanation
Indices: 38769726--38769767 Score: 77
Period size: 3 Copynumber: 14.3 Consensus size: 3
38769716 CTTTCTTTCT
38769726 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT- TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
38769768 CATTTCTCTC
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 36 0.95
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:38770320 original size:6 final size:6
Alignment explanation
Indices: 38770305--38770334 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
38770295 AGAAAAATTA
*
38770305 TATTTT TATTTC TATTTC TATTTC TATTTC
1 TATTTC TATTTC TATTTC TATTTC TATTTC
38770335 AATGTCTTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.13, G:0.00, T:0.70
Consensus pattern (6 bp):
TATTTC
Found at i:38775214 original size:44 final size:44
Alignment explanation
Indices: 38775109--38775230 Score: 131
Period size: 44 Copynumber: 2.7 Consensus size: 44
38775099 TCGGCTTTAA
* * * * *
38775109 TCTGTTTCACTACAACTTCAATGAGATAAGATTTGCCATCTTCAG
1 TCTGCTTCACTGCAACTTC-AGGAGATAAGACTTGCCATATTCAG
* *
38775154 TCTGCCTCGCTGCAACTTCAGGAGGATAAGACTTGCTCA-ATT-AG
1 TCTGCTTCACTGCAACTTCAGGA-GATAAGACTTGC-CATATTCAG
38775198 TCTGCTTCACTGCAACTTCAGGAAGATAAGACT
1 TCTGCTTCACTGCAACTTCAGG-AGATAAGACT
38775231 AGATGCGATC
Statistics
Matches: 65, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
44 34 0.52
45 29 0.45
46 2 0.03
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (44 bp):
TCTGCTTCACTGCAACTTCAGGAGATAAGACTTGCCATATTCAG
Found at i:38775227 original size:217 final size:215
Alignment explanation
Indices: 38774840--38775607 Score: 954
Period size: 217 Copynumber: 3.6 Consensus size: 215
38774830 AATTTAGTGC
* * *
38774840 TTTAATCCACTCCACTGCAACTTCAGGGAGATATGATTATCGGCTTTAATCTACTCCACTGCAAC
1 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAAC
* ** * ** *
38774905 TTCAGGGAGATAAGACTAGATGTGATCTTCAGTCTGCCTCACTGCAACTTGAAAATGATAAGACC
66 TTCAGGGAGATAAGA-T--TTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACC
38774970 TGCTTACTTAGTCTGCTCCACTGCAACCTT-AGGGAGATAAGACTAGATACGATCTGCTCTCTGC
128 TGCTTACTTAGTCTGCTCCACTGCAA-CTTCA-GGAGATAAGACTAGAT-CGATCTGCTCTCTGC
*
38775034 AACTTCAGAGAGATAAGATCTAAAGT
190 AACTTCAGAGAGATAAGATCTAAGGT
* * * * * *
38775060 TTTGATCCGCTCCACTGTAACTTCAGGGAGATGGGATTATCGGCTTTAATCTGTTTCACTACAAC
1 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAAC
** * *
38775125 TTCAATGAGATAAGATTTGCCATCTTCAGTCTGCCTCGCTGCAACTTCAGGAGGATAAGACTTGC
66 TTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACCTGC
* * *
38775190 TCAATTAGTCTGCTTCACTGCAACTTCAGGAAGATAAGACTAGATGCGATCTGCTCTCTGCAACT
131 TTACTTAGTCTGCTCCACTGCAACTTCAGG-AGATAAGACTAGAT-CGATCTGCTCTCTGCAACT
38775255 TCAGAGAGATAAGATCTAAGGT
194 TCAGAGAGATAAGATCTAAGGT
* * * * *
38775277 TTTAACCCGCTCTACTGCAACTTCAGGTAGATAGGATTGTCGGCTTTAATTTGCTCCACTGCAAC
1 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAAC
* * * *
38775342 TTTAGGGAGATAAGATTTGCCATCTTCAATCTGCCTCACTGCAACTTTAGGAGGATAAGGCCTGC
66 TTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACCTGC
38775407 TTACTTAGTCTGCTCCACTGCAACTTCAGG-G---AGA-TAG---GA-CTGCTCTCTGCAATCTT
131 TTACTTAGTCTGCTCCACTGCAACTTCAGGAGATAAGACTAGATCGATCTGCTCTCTGCAA-CTT
*
38775463 TAGAGAGATAAGATCTAAGGT
195 CAGAGAGATAAGATCTAAGGT
* * ** * *
38775484 TTTAATCCG-TTCACTACAACTTCAGCAAGATAGGATTACCGGCTTTAATCTGCTCCACTGCATC
1 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAAC
*
38775548 TTCAGGGAGATAAGATTTGCC-TACTT-AGTCTG-TTCCACTGCAACTTCAGG-GAGATAAGAC
66 TTCAGGGAGATAAGATTTGCCAT-CTTCAGTCTGCCT-CACTGCAACTTCAGGAG-GATAAGAC
38775608 TCGATCTGTT
Statistics
Matches: 479, Mismatches: 63, Indels: 27
0.84 0.11 0.05
Matches are distributed among these distances:
204 2 0.00
205 27 0.06
206 82 0.17
207 33 0.07
211 3 0.01
212 3 0.01
215 1 0.00
216 5 0.01
217 253 0.53
219 1 0.00
220 69 0.14
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (215 bp):
TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAAC
TTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACCTGC
TTACTTAGTCTGCTCCACTGCAACTTCAGGAGATAAGACTAGATCGATCTGCTCTCTGCAACTTC
AGAGAGATAAGATCTAAGGT
Found at i:38775559 original size:44 final size:44
Alignment explanation
Indices: 38775495--38775606 Score: 118
Period size: 44 Copynumber: 2.5 Consensus size: 44
38775485 TTAATCCGTT
* ** * *
38775495 CACTACAACTTCAGCAAGATAGGA-TTACCGGCTTTAATCTGCTC
1 CACTGCAACTTCAGGGAGATAAGATTTACCGAC-TTAATCTGCTC
* * * * *
38775539 CACTGCATCTTCAGGGAGATAAGATTTGCCTACTTAGTCTGTTC
1 CACTGCAACTTCAGGGAGATAAGATTTACCGACTTAATCTGCTC
38775583 CACTGCAACTTCAGGGAGATAAGA
1 CACTGCAACTTCAGGGAGATAAGA
38775607 CTCGATCTGT
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
44 51 0.91
45 5 0.09
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.28
Consensus pattern (44 bp):
CACTGCAACTTCAGGGAGATAAGATTTACCGACTTAATCTGCTC
Found at i:38789980 original size:39 final size:40
Alignment explanation
Indices: 38789818--38790080 Score: 301
Period size: 40 Copynumber: 6.7 Consensus size: 40
38789808 GCTCCTCGTT
* *
38789818 CAAATGCCTTCGGGACATAGCCCGG-CTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
38789858 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * *
38789898 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
38789938 CAAATGCCTTCGGG-CTTAGCTCGGAATTAGTATCTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
38789977 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
38790016 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
38790057 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
38790081 CAGCATTCAA
Statistics
Matches: 201, Mismatches: 14, Indels: 17
0.87 0.06 0.07
Matches are distributed among these distances:
38 2 0.01
39 85 0.42
40 104 0.52
41 10 0.05
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:38790041 original size:118 final size:122
Alignment explanation
Indices: 38789818--38790080 Score: 330
Period size: 118 Copynumber: 2.2 Consensus size: 122
38789808 GCTCCTCGTT
* *
38789818 CAAATGCCTTCGGGACATAGCCCGG-CTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
* *
38789882 GATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT-TTAGTAAC-TCGCA
66 GAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATT-GTAACTTAGCA
* * *
38789938 CAAATGCCTTCGGG-CTTAGCTCGGAAT-TAGT-ATCTCGGACAAATGCCTTCGGG-CTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCC
* ** *
38789999 GGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATTGTCACTTAGCA
65 GGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATTGTAACTTAGCA
38790057 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
38790081 CAGCATTCAA
Statistics
Matches: 125, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
117 12 0.10
118 61 0.49
119 37 0.30
120 15 0.12
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (122 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
GAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATTGTAACTTAGCA
Found at i:38797946 original size:79 final size:78
Alignment explanation
Indices: 38797844--38798066 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 78
38797834 GCTCCTCGTT
* *
38797844 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
38797909 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
38797924 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
38797987 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
38798002 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
38798065 GA
63 GA
38798067 CAACATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 47 0.38
79 57 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:38797961 original size:39 final size:40
Alignment explanation
Indices: 38797844--38798066 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
38797834 GCTCCTCGTT
* *
38797844 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
38797884 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
38797924 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
38797963 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
38798002 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
38798043 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
38798067 CAACATTCAA
Statistics
Matches: 166, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 89 0.54
40 64 0.39
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:38800241 original size:20 final size:20
Alignment explanation
Indices: 38800193--38800241 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
38800183 AATGTTAGCG
*
38800193 TATTTTTTT-TATTTTATAA
1 TATTTTTTTGTATATTATAA
* **
38800212 TAATAATTTGTATATTATAA
1 TATTTTTTTGTATATTATAA
38800232 TATTTTTTTG
1 TATTTTTTTG
38800242 ACAAAGATGG
Statistics
Matches: 22, Mismatches: 7, Indels: 1
0.73 0.23 0.03
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (20 bp):
TATTTTTTTGTATATTATAA
Found at i:38808576 original size:144 final size:144
Alignment explanation
Indices: 38808145--38808578 Score: 751
Period size: 146 Copynumber: 3.0 Consensus size: 144
38808135 GAATCTCTAC
* *
38808145 TCTTTGCATGTCTGTGGAATTTGTTGGAATCTAAATTGTCTATTAACCAGTGATAGAATATAAAA
1 TCTTTGCATGTC--TGGAATTTGTTGGAATCTAAGTTTTCTATTAACCAGTGATAGAATATAAAA
38808210 ACAATGCAATTTCTATTAGACATGAAATTTTGTACATAACCACGAGTATTAAGCTGACCAACAAG
64 ACAATGCAATTTCTATTAGACATGAAATTTTGTACATAACCACGAGTATTAAGCTGACCAACAAG
38808275 AAACGGGAAATTGTAT
129 AAACGGGAAATTGTAT
38808291 TCTTTGCATGTCTGGAATTTGTTGGAATCTAAGTTTTCTATTAACCAGGGTGATAGAATATAAAA
1 TCTTTGCATGTCTGGAATTTGTTGGAATCTAAGTTTTCTATTAACCA--GTGATAGAATATAAAA
* *
38808356 ACACTGCAATTTCTATTAGACATGAAATTTTGTTCATAACCACGAGTATTAAGCTGACCAACAAG
64 ACAATGCAATTTCTATTAGACATGAAATTTTGTACATAACCACGAGTATTAAGCTGACCAACAAG
*
38808421 AAATGGGAAATTGTAT
129 AAACGGGAAATTGTAT
38808437 TCTTTGCATGTCTGGAATTTGTTGGAATCTAAGTTTTCTATTAACCAGTGATAGAATATAAAAAC
1 TCTTTGCATGTCTGGAATTTGTTGGAATCTAAGTTTTCTATTAACCAGTGATAGAATATAAAAAC
* * *
38808502 AGTGCAATTTCTATTAGACACGGAATTTTGTACATAACCACGAGTATTAAGCTGACCAACAAGAA
66 AATGCAATTTCTATTAGACATGAAATTTTGTACATAACCACGAGTATTAAGCTGACCAACAAGAA
*
38808567 ACGGTAAATTGT
131 ACGGGAAATTGT
38808579 GTTTTTGAGC
Statistics
Matches: 275, Mismatches: 11, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
144 122 0.44
146 153 0.56
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.33
Consensus pattern (144 bp):
TCTTTGCATGTCTGGAATTTGTTGGAATCTAAGTTTTCTATTAACCAGTGATAGAATATAAAAAC
AATGCAATTTCTATTAGACATGAAATTTTGTACATAACCACGAGTATTAAGCTGACCAACAAGAA
ACGGGAAATTGTAT
Found at i:38809331 original size:3 final size:3
Alignment explanation
Indices: 38809325--38809351 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
38809315 CCACCACCAC
38809325 CAT CAT CAT CAT CAT CAT CAT CAT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT
38809352 TTATTTTCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
CAT
Found at i:38813560 original size:83 final size:83
Alignment explanation
Indices: 38813476--38813703 Score: 236
Period size: 84 Copynumber: 2.7 Consensus size: 83
38813466 AATTATATCA
* * *
38813476 AAATAAAATC-TATTAAACGGCGGAAATAAATCCCGAAACATAATTATTTGA-TTACA-TCTTTA
1 AAATAAAATCTTGTTAAACGGCGGAAATAAATCCCGAAACATAATTATTTAATTTA-ATTC-TAA
*
38813538 TTT-GAAAACAAAATAAAATC
64 TTTAG-AAACAAAACAAAATC
* *
38813558 AAATAAAATCTTGTTAAATGGCGTG-AATAAATCCC-AGAACATATTTTATTTAATTTAATTCTA
1 AAATAAAATCTTGTTAAACGGCG-GAAATAAATCCCGA-AACATA-ATTATTTAATTTAATTCTA
38813621 ATTTAGAAACAAAACAAAATC
63 ATTTAGAAACAAAACAAAATC
** *
38813642 AAATAAAATCTTGTTAAACTAC-GAGAATAAATCCCGAAACAAAATTTTATTTAATTTTAATT
1 AAATAAAATCTTGTTAAACGGCGGA-AATAAATCCCGAAACATAA--TTATTTAA-TTTAATT
38813704 TCTCATTTTT
Statistics
Matches: 122, Mismatches: 11, Indels: 22
0.79 0.07 0.14
Matches are distributed among these distances:
82 12 0.10
83 26 0.21
84 62 0.51
85 15 0.12
86 7 0.06
ACGTcount: A:0.47, C:0.12, G:0.08, T:0.32
Consensus pattern (83 bp):
AAATAAAATCTTGTTAAACGGCGGAAATAAATCCCGAAACATAATTATTTAATTTAATTCTAATT
TAGAAACAAAACAAAATC
Found at i:38813643 original size:84 final size:86
Alignment explanation
Indices: 38813543--38813703 Score: 240
Period size: 84 Copynumber: 1.9 Consensus size: 86
38813533 CTTTATTTGA
* * * *
38813543 AAACAAAATAAAATCAAATAAAATCTTGTTAAA-TGGCGTGAATAAATCCC-AGAAC-ATATTTT
1 AAACAAAACAAAATCAAATAAAATCTTGTTAAACT-ACGAGAATAAATCCCGA-AACAAAATTTT
38813605 ATTTAA-TTTAATTCTAATTTAG
64 ATTTAATTTTAATTCTAATTTAG
38813627 AAACAAAACAAAATCAAATAAAATCTTGTTAAACTACGAGAATAAATCCCGAAACAAAATTTTAT
1 AAACAAAACAAAATCAAATAAAATCTTGTTAAACTACGAGAATAAATCCCGAAACAAAATTTTAT
38813692 TTAATTTTAATT
66 TTAATTTTAATT
38813704 TCTCATTTTT
Statistics
Matches: 69, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
84 48 0.70
85 14 0.20
86 7 0.10
ACGTcount: A:0.49, C:0.12, G:0.07, T:0.32
Consensus pattern (86 bp):
AAACAAAACAAAATCAAATAAAATCTTGTTAAACTACGAGAATAAATCCCGAAACAAAATTTTAT
TTAATTTTAATTCTAATTTAG
Found at i:38813840 original size:86 final size:86
Alignment explanation
Indices: 38813666--38813925 Score: 333
Period size: 86 Copynumber: 3.0 Consensus size: 86
38813656 TAAACTACGA
* * ** *
38813666 GAATAAATCCCGAAACAAAATTTTATTTAATTTTAATTTCTCATTTTTGGAAATAAAATAAAAAT
1 GAATCAATCCCGAAA-TAAATTTTATTTACCTTTAATTTC-CA-GTTTGGAAATAAAATAAAAA-
* *
38813731 TTGGAATAAAATCGTTGAACGGAGG
62 ATAGAATAAAATCGTTGAACGGAGG
38813756 GAATCAATCCCGAAATAAATTTTATTTACCTTTAATTTCCAGTTTGGAAATAAAATAAAAAATAG
1 GAATCAATCCCGAAATAAATTTTATTTACCTTTAATTTCCAGTTTGGAAATAAAATAAAAAATAG
38813821 AATAAAATCGTTGAACGGAGG
66 AATAAAATCGTTGAACGGAGG
* * * * * *
38813842 GAATCAATCCCGAAATAGATTTTATTTACCTTTAATCTCCCGTTTAGAAAT-AAATAAAATAGAG
1 GAATCAATCCCGAAATAAATTTTATTTACCTTTAATTTCCAGTTTGGAAATAAAATAAAAAATA-
*
38813906 GAAAAAAATCTGTTGAACGG
65 GAATAAAATC-GTTGAACGG
38813926 CAGAAAAAAT
Statistics
Matches: 154, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
85 10 0.06
86 79 0.51
87 28 0.18
88 2 0.01
89 21 0.14
90 14 0.09
ACGTcount: A:0.43, C:0.12, G:0.14, T:0.32
Consensus pattern (86 bp):
GAATCAATCCCGAAATAAATTTTATTTACCTTTAATTTCCAGTTTGGAAATAAAATAAAAAATAG
AATAAAATCGTTGAACGGAGG
Found at i:38813942 original size:86 final size:85
Alignment explanation
Indices: 38813670--38813954 Score: 254
Period size: 86 Copynumber: 3.3 Consensus size: 85
38813660 CTACGAGAAT
* * ** * * * *
38813670 AAATCCCGAAACAAAATTTTATTTAATTTTAATTTCTCATTTTTGGAAATAAAATAAAAATTTG-
1 AAATCCCGAAA-TAGATTTTATTTACCTTTAATCTC-CA-GTTTAGAAATAAAATAAAAA--AGA
* *
38813734 GAATAAAATCGTTGAACGGAGGGAAT
61 GAAAAAAATCGTTGAACGGA-GGAAA
* * * * * *
38813760 CAATCCCGAAATAAATTTTATTTACCTTTAATTTCCAGTTTGGAAATAAAATAAAAAATAGAATA
1 AAATCCCGAAATAGATTTTATTTACCTTTAATCTCCAGTTTAGAAATAAAATAAAAAAGAGAAAA
*
38813825 AAATCGTTGAACGGAGGGAAT
66 AAATCGTTGAACGGA-GGAAA
* * *
38813846 CAATCCCGAAATAGATTTTATTTACCTTTAATCTCCCGTTTAGAAAT-AAATAAAATAGAGGAAA
1 AAATCCCGAAATAGATTTTATTTACCTTTAATCTCCAGTTTAGAAATAAAATAAAAAAGA-GAAA
38813910 AAAATCTGTTGAACGGCA-GAAA
65 AAAATC-GTTGAACGG-AGGAAA
* *
38813932 AAATCTCGAAACAGA-TTTATTTA
1 AAATCCCGAAATAGATTTTATTTA
38813955 ATTAAAAAAA
Statistics
Matches: 173, Mismatches: 18, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
85 18 0.10
86 93 0.54
87 28 0.16
88 3 0.02
89 21 0.12
90 10 0.06
ACGTcount: A:0.44, C:0.12, G:0.13, T:0.31
Consensus pattern (85 bp):
AAATCCCGAAATAGATTTTATTTACCTTTAATCTCCAGTTTAGAAATAAAATAAAAAAGAGAAAA
AAATCGTTGAACGGAGGAAA
Done.