Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53248092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1300000 characters in sequence are not A, C, G, or T
File 13 of 175
Found at i:3736209 original size:52 final size:52
Alignment explanation
Indices: 3736131--3736234 Score: 190
Period size: 52 Copynumber: 2.0 Consensus size: 52
3736121 ATTGCATGTT
* *
3736131 CACCATCCTGTTCACTGGACATTGAATCACTTGGGTTTCTTTCTATTAAACA
1 CACCATCCTATTCACTGGACATTGAATCACTTGGGTCTCTTTCTATTAAACA
3736183 CACCATCCTATTCACTGGACATTGAATCACTTGGGTCTCTTTCTATTAAACA
1 CACCATCCTATTCACTGGACATTGAATCACTTGGGTCTCTTTCTATTAAACA
3736235 ATTAAAAGAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.26, C:0.26, G:0.12, T:0.36
Consensus pattern (52 bp):
CACCATCCTATTCACTGGACATTGAATCACTTGGGTCTCTTTCTATTAAACA
Found at i:3736430 original size:16 final size:16
Alignment explanation
Indices: 3736409--3736442 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
3736399 TTTATAGCAA
3736409 TAAACATACTTAATTT
1 TAAACATACTTAATTT
3736425 TAAACATACTTAATTT
1 TAAACATACTTAATTT
3736441 TA
1 TA
3736443 TCCTGTCACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (16 bp):
TAAACATACTTAATTT
Found at i:3736647 original size:12 final size:12
Alignment explanation
Indices: 3736630--3736658 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
3736620 TGAAGAAACA
3736630 TCATCATCGTCG
1 TCATCATCGTCG
3736642 TCATCATCGTCG
1 TCATCATCGTCG
3736654 TCATC
1 TCATC
3736659 GTCCCTTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.34, G:0.14, T:0.34
Consensus pattern (12 bp):
TCATCATCGTCG
Found at i:3738948 original size:45 final size:45
Alignment explanation
Indices: 3738884--3738979 Score: 158
Period size: 45 Copynumber: 2.1 Consensus size: 45
3738874 AGCAAGGCAA
3738884 TAATGTGAAATTTCTAGCTAATGTTCCATTATATAAACAATAGGC
1 TAATGTGAAATTTCTAGCTAATGTTCCATTATATAAACAATAGGC
* *
3738929 TAATGTGAAATTT-TGAGCTAATTTTCCATTATATAAACAATCGGC
1 TAATGTGAAATTTCT-AGCTAATGTTCCATTATATAAACAATAGGC
3738974 TAATGT
1 TAATGT
3738980 TCCATTTATA
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
44 1 0.02
45 47 0.98
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (45 bp):
TAATGTGAAATTTCTAGCTAATGTTCCATTATATAAACAATAGGC
Found at i:3739347 original size:21 final size:21
Alignment explanation
Indices: 3739323--3739366 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
3739313 AAAATTTTTT
3739323 TAAAAATTTATATATTTAAAA
1 TAAAAATTTATATATTTAAAA
3739344 TAAAAATTTATATATTTAAAA
1 TAAAAATTTATATATTTAAAA
3739365 TA
1 TA
3739367 TTCTCGGGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (21 bp):
TAAAAATTTATATATTTAAAA
Found at i:3742520 original size:13 final size:13
Alignment explanation
Indices: 3742502--3742532 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
3742492 AATTAAGCTA
3742502 CCAAAACTTAGTC
1 CCAAAACTTAGTC
3742515 CCAAAACTTAGTC
1 CCAAAACTTAGTC
3742528 CCAAA
1 CCAAA
3742533 TACCGTCACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.42, C:0.32, G:0.06, T:0.19
Consensus pattern (13 bp):
CCAAAACTTAGTC
Found at i:3744337 original size:29 final size:32
Alignment explanation
Indices: 3744291--3744350 Score: 99
Period size: 30 Copynumber: 2.0 Consensus size: 32
3744281 TTTAAAATAC
3744291 TTTTAAAATAATGTTTTTAAT-TTT-TTTTAT
1 TTTTAAAATAATGTTTTTAATGTTTATTTTAT
3744321 TTTTAAAATAAT-TTTTTAATGTTTATTTTA
1 TTTTAAAATAATGTTTTTAATGTTTATTTTA
3744351 AAAATGGGTC
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 8 0.29
30 15 0.54
31 5 0.18
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (32 bp):
TTTTAAAATAATGTTTTTAATGTTTATTTTAT
Found at i:3748677 original size:22 final size:23
Alignment explanation
Indices: 3748645--3748687 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
3748635 AAATTTATAA
3748645 TTATAAATTTTTATAACTTTTGT
1 TTATAAATTTTTATAACTTTTGT
* *
3748668 TTAT-AATTTTTGTAATTTTT
1 TTATAAATTTTTATAACTTTT
3748688 AATAGTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.28, C:0.02, G:0.05, T:0.65
Consensus pattern (23 bp):
TTATAAATTTTTATAACTTTTGT
Found at i:3749864 original size:9 final size:9
Alignment explanation
Indices: 3749829--3749870 Score: 50
Period size: 9 Copynumber: 4.4 Consensus size: 9
3749819 CCACATCAAG
3749829 AAATAATTTA
1 AAAT-ATTTA
3749839 AAAT-TTATA
1 AAATATT-TA
3749848 AAAGTATTTA
1 AAA-TATTTA
3749858 AAATATTTA
1 AAATATTTA
3749867 AAAT
1 AAAT
3749871 TAAAAATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
8 2 0.07
9 15 0.52
10 10 0.34
11 2 0.07
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (9 bp):
AAATATTTA
Found at i:3757069 original size:46 final size:46
Alignment explanation
Indices: 3756897--3757068 Score: 202
Period size: 46 Copynumber: 3.7 Consensus size: 46
3756887 AAGTAAGTTA
* *
3756897 ACTCTACTAACAGTTCGTGGGATCGAATGATAAAAGAACTCGATACT
1 ACTCTACTAACAGCTCGTGGGATCGAATGGTAAAA-AACTCGATACT
* * * *
3756944 ACTCTATTAACAGCTCGTGGAATTGAATGGTAAAAAACTCAATACT
1 ACTCTACTAACAGCTCGTGGGATCGAATGGTAAAAAACTCGATACT
* ** * * *
3756990 ACTCTACCAGTAGCTCGTGGGATCAAATGGTAAGAAACTCGATGCT
1 ACTCTACTAACAGCTCGTGGGATCGAATGGTAAAAAACTCGATACT
*
3757036 ACTCTACTAACCA-CTCGTGAGATCGAATGGTAA
1 ACTCTACTAA-CAGCTCGTGGGATCGAATGGTAA
3757069 GTAGCTCGAC
Statistics
Matches: 103, Mismatches: 21, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
46 72 0.70
47 31 0.30
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (46 bp):
ACTCTACTAACAGCTCGTGGGATCGAATGGTAAAAAACTCGATACT
Found at i:3768424 original size:13 final size:13
Alignment explanation
Indices: 3768406--3768438 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
3768396 TTACTTTCTC
3768406 TTTCTTTTTCTTT
1 TTTCTTTTTCTTT
3768419 TTTCTTTTTCTTT
1 TTTCTTTTTCTTT
*
3768432 TTCCTTT
1 TTTCTTT
3768439 CTTTTTGCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTCTTTTTCTTT
Found at i:3768432 original size:6 final size:6
Alignment explanation
Indices: 3768400--3768444 Score: 56
Period size: 6 Copynumber: 7.5 Consensus size: 6
3768390 TTTAGTTTAC
* *
3768400 TTTCTC TTTCTT TTTCTTT TTTCTT TTTCTT TTTC-C TTTCTT TTT
1 TTTCTT TTTCTT TTTC-TT TTTCTT TTTCTT TTTCTT TTTCTT TTT
3768445 GCACTTATAC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
5 4 0.12
6 24 0.71
7 6 0.18
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTCTT
Found at i:3768664 original size:23 final size:20
Alignment explanation
Indices: 3768623--3768665 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 20
3768613 ATTTTAAAAA
*
3768623 AATATATAAAAATTAAAATT
1 AATATATAAAAATAAAAATT
3768643 AATATATTAAAAAATAACAAATT
1 AATATA-T-AAAAATAA-AAATT
3768666 GTAGCATTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 6 0.32
21 1 0.05
22 7 0.37
23 5 0.26
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (20 bp):
AATATATAAAAATAAAAATT
Found at i:3774474 original size:39 final size:39
Alignment explanation
Indices: 3774431--3774514 Score: 141
Period size: 39 Copynumber: 2.2 Consensus size: 39
3774421 CACTTAAACT
*
3774431 TACCCCATGATACTTCTTGAAGTTATATAATTAACGACC
1 TACCCCATGATACTTCTTGAAGTTATATAAATAACGACC
* *
3774470 TACCCCATGATACTTCTTGAAGTTATATAAATAATGACT
1 TACCCCATGATACTTCTTGAAGTTATATAAATAACGACC
3774509 TACCCC
1 TACCCC
3774515 TCCTCCACAA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.33, C:0.24, G:0.10, T:0.33
Consensus pattern (39 bp):
TACCCCATGATACTTCTTGAAGTTATATAAATAACGACC
Found at i:3787448 original size:11 final size:11
Alignment explanation
Indices: 3787432--3787459 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
3787422 TTACATTCGT
3787432 ATCATAAATCA
1 ATCATAAATCA
3787443 ATCATAAATCA
1 ATCATAAATCA
3787454 ATCATA
1 ATCATA
3787460 TTGTCCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.54, C:0.18, G:0.00, T:0.29
Consensus pattern (11 bp):
ATCATAAATCA
Found at i:3789398 original size:27 final size:26
Alignment explanation
Indices: 3789360--3789412 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
3789350 AAATGTGAAG
* *
3789360 GGGGTTGCTAAGTGCTGATTCTCCCGA
1 GGGGTTGCTAAGAGCTGAATC-CCCGA
*
3789387 GGGGTTGTTAAGAGCTGAATCCCCGA
1 GGGGTTGCTAAGAGCTGAATCCCCGA
3789413 ATCATTAGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 5 0.22
27 18 0.78
ACGTcount: A:0.19, C:0.21, G:0.34, T:0.26
Consensus pattern (26 bp):
GGGGTTGCTAAGAGCTGAATCCCCGA
Found at i:3789481 original size:102 final size:101
Alignment explanation
Indices: 3789304--3789488 Score: 280
Period size: 102 Copynumber: 1.8 Consensus size: 101
3789294 AAGTGTTGAT
* * * * *
3789304 TCCCCGACTCATTGGTGGTTACAAAGAGCTGATTCCACCGTATCTTAAATGTGAAGGGGGTTGCT
1 TCCCCGAATCATTAGTGATTACAAAGAGCTGATACCACCGTATCTTAAATGTGAAAGGGGTTGCT
*
3789369 AAGTGCTGATTCTCCCGAGGGGTTGTTAAGAGCTGAA
66 AAGTGATGATTC-CCCGAGGGGTTGTTAAGAGCTGAA
* * *
3789406 TCCCCGAATCATTAGTGATTGCTAAGTGCTGATACCACCGTATCTTAAATGTGAAAGGGGTTGCT
1 TCCCCGAATCATTAGTGATTACAAAGAGCTGATACCACCGTATCTTAAATGTGAAAGGGGTTGCT
3789471 AAGTGATGATTCCCCGAG
66 AAGTGATGATTCCCCGAG
3789489 TCATTGGTGG
Statistics
Matches: 74, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
101 6 0.08
102 68 0.92
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (101 bp):
TCCCCGAATCATTAGTGATTACAAAGAGCTGATACCACCGTATCTTAAATGTGAAAGGGGTTGCT
AAGTGATGATTCCCCGAGGGGTTGTTAAGAGCTGAA
Found at i:3789999 original size:42 final size:41
Alignment explanation
Indices: 3789952--3790086 Score: 151
Period size: 41 Copynumber: 3.5 Consensus size: 41
3789942 ATTCATTGGT
3789952 GGTTGCTAAGTGCTGATTCCACCGTATATTAAATGTGAAAGG
1 GGTTGCTAAGTGCTGATTCCACCGTATATTAAATGTG-AAGG
* * * *
3789994 GGTTGCTAAGTGCTAATTCC-CCG---ACT-CAT-TG--GT
1 GGTTGCTAAGTGCTGATTCCACCGTATATTAAATGTGAAGG
* *
3790027 GGTTGCAAAGTGCTGATTCCACCGTATCTTAAATGTGAAGG
1 GGTTGCTAAGTGCTGATTCCACCGTATATTAAATGTGAAGG
3790068 GGTTGCTAAGTGCTGATTC
1 GGTTGCTAAGTGCTGATTC
3790087 TCCCGAGGGG
Statistics
Matches: 74, Mismatches: 11, Indels: 17
0.73 0.11 0.17
Matches are distributed among these distances:
33 19 0.26
34 3 0.04
36 2 0.03
37 3 0.04
38 4 0.05
39 2 0.03
41 22 0.30
42 19 0.26
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.32
Consensus pattern (41 bp):
GGTTGCTAAGTGCTGATTCCACCGTATATTAAATGTGAAGG
Found at i:3790038 original size:75 final size:74
Alignment explanation
Indices: 3789915--3790092 Score: 293
Period size: 75 Copynumber: 2.4 Consensus size: 74
3789905 TGATTCCCCT
* * *
3789915 AAGGGGTTGCTGAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATA
1 AAGGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCAAAGTGCTGATTCCACCGTATA
3789980 TTAAATGTG
66 TTAAATGTG
*
3789989 AAAGGGGTTGCTAAGTGCTAATTCCCCGACTCATTGGTGGTTGCAAAGTGCTGATTCCACCGTAT
1 -AAGGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCAAAGTGCTGATTCCACCGTAT
*
3790054 CTTAAATGTG
65 ATTAAATGTG
3790064 AAGGGGTTGCTAAGTGCTGATTCTCCCGA
1 AAGGGGTTGCTAAGTGCTGATTC-CCCGA
3790093 GGGGTTGCTA
Statistics
Matches: 96, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
74 22 0.23
75 74 0.77
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (74 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCAAAGTGCTGATTCCACCGTATA
TTAAATGTG
Found at i:3790103 original size:27 final size:26
Alignment explanation
Indices: 3790065--3790118 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 26
3790055 TTAAATGTGA
3790065 AGGGGTTGCTAAGTGCTGATTCTCCCG
1 AGGGGTTGCTAAGTGCTGATT-TCCCG
*
3790092 AGGGGTTGCTAAGTGTTGATTTCCCG
1 AGGGGTTGCTAAGTGCTGATTTCCCG
3790118 A
1 A
3790119 ATCATTGGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 6 0.23
27 20 0.77
ACGTcount: A:0.17, C:0.19, G:0.33, T:0.31
Consensus pattern (26 bp):
AGGGGTTGCTAAGTGCTGATTTCCCG
Found at i:3790118 original size:101 final size:101
Alignment explanation
Indices: 3789991--3790193 Score: 327
Period size: 101 Copynumber: 2.0 Consensus size: 101
3789981 TAAATGTGAA
* *
3789991 AGGGGTTGCTAAGTGCTAATTCCCCGACTCATTGGTGGTTGCAAAGTGCTGATTCCACCGTATCT
1 AGGGGTTGCTAAGTGCTAATTCCCCGAATCATTGGTGGTTGCAAAGTGCTGATCCCACCGTATCT
3790056 TAAATGTG-AAGGGGTTGCTAAGTGCTGATTCTCCCG
66 TAAATGTGAAAGGGGTTGCTAAGTGCTGATTC-CCCG
* * * *
3790092 AGGGGTTGCTAAGTGTTGATTTCCCGAATCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATCT
1 AGGGGTTGCTAAGTGCTAATTCCCCGAATCATTGGTGGTTGCAAAGTGCTGATCCCACCGTATCT
*
3790157 TAAATGTGAAAGTGGTTGCTAAGTGCTGATTCCCCG
66 TAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCG
3790193 A
1 A
3790194 CTCATTGGTG
Statistics
Matches: 94, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
101 72 0.77
102 22 0.23
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.32
Consensus pattern (101 bp):
AGGGGTTGCTAAGTGCTAATTCCCCGAATCATTGGTGGTTGCAAAGTGCTGATCCCACCGTATCT
TAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCG
Found at i:3790191 original size:176 final size:176
Alignment explanation
Indices: 3789890--3790226 Score: 559
Period size: 176 Copynumber: 1.9 Consensus size: 176
3789880 GAATATAAAG
* *
3789890 GGGGTTGCTAAGTGCTGATTCCCCTAAGGGGTTGCTGAGTGCTGATTCCCCGATTCATTGGTGGT
1 GGGGTTGCTAAGTGCTGATTCCCCTAAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGT
*
3789955 TGCTAAGTGCTGATTCCACCGTATATTAAATGTGAAAGGGGTTGCTAAGTGCTAATTCCCCGACT
66 TGCTAAGTGCTGATCCCACCGTATATTAAATGTGAAAGGGGTTGCTAAGTGCTAATTCCCCGACT
*
3790020 CATTGGTGGTTGCAAAGTGCTGATTCCACCGTATCTTAAATGTGAA
131 CATTGGTGGTTGCAAAGTGCTGAATCCACCGTATCTTAAATGTGAA
* * *
3790066 GGGGTTGCTAAGTGCTGATTCTCCC-GAGGGGTTGCTAAGTGTTGATTTCCCGAATCATTGGTGG
1 GGGGTTGCTAAGTGCTGATTC-CCCTAAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGG
* * *
3790130 TTGCTAAGTGCTGATCCCACCGTATCTTAAATGTGAAAGTGGTTGCTAAGTGCTGATTCCCCGAC
65 TTGCTAAGTGCTGATCCCACCGTATATTAAATGTGAAAGGGGTTGCTAAGTGCTAATTCCCCGAC
*
3790195 TCATTGGTGGTTGCTAAGTGCTGAATCCACCG
130 TCATTGGTGGTTGCAAAGTGCTGAATCCACCG
3790227 ATAACGGATA
Statistics
Matches: 149, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
176 146 0.98
177 3 0.02
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.32
Consensus pattern (176 bp):
GGGGTTGCTAAGTGCTGATTCCCCTAAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGT
TGCTAAGTGCTGATCCCACCGTATATTAAATGTGAAAGGGGTTGCTAAGTGCTAATTCCCCGACT
CATTGGTGGTTGCAAAGTGCTGAATCCACCGTATCTTAAATGTGAA
Found at i:3790609 original size:101 final size:101
Alignment explanation
Indices: 3790429--3790631 Score: 338
Period size: 101 Copynumber: 2.0 Consensus size: 101
3790419 CACCAATGAG
*
3790429 TCGGGGAATCAGCACTTAGCAACCACTTTCACATTTAAGATACGGTGGGATCAGCACTTAGCAAC
1 TCGGGGAATCAGCACTTAGCAACCACTTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAAC
*
3790494 CACCAATGATTCGGGGAATCAACACTTAGCAACCCC
66 CACCAATGAGTCGGGGAATCAACACTTAGCAACCCC
*
3790530 TCGGGAGAATCAGCACTTAGCAACTC-C-TTCACATTTAAGATACGGTGGAATCAGCACTTTGCA
1 TCGGG-GAATCAGCACTTAGCAAC-CACTTTCACATTTAAGATACGGTGGAATCAGCACTTAGCA
*
3790593 ACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCC
64 ACCACCAATGAGTCGGGGAATCAACACTTAGCAACCCC
3790631 T
1 T
3790632 TTCACATTTA
Statistics
Matches: 96, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
101 76 0.79
102 19 0.20
103 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (101 bp):
TCGGGGAATCAGCACTTAGCAACCACTTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAAC
CACCAATGAGTCGGGGAATCAACACTTAGCAACCCC
Found at i:3790653 original size:75 final size:75
Alignment explanation
Indices: 3790530--3790707 Score: 304
Period size: 75 Copynumber: 2.4 Consensus size: 75
3790520 TAGCAACCCC
* *
3790530 TCGGGAGAATCAGCACTTAGCAACTCC-TTCACATTTAAGATACGGTGGAATCAGCACTTTGCAA
1 TCGGG-GAATCAGCACTTAGCAACCCCTTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAA
*
3790594 CCACCAATGAG
65 CCACCAATGAA
*
3790605 TCGGGGAATCAGCACTTAGCAACCCCTTTCACATTTAATATACGGTGGAATCAGCACTTAGCAAC
1 TCGGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAAC
3790670 CACCAATGAA
66 CACCAATGAA
3790680 TCGGGGAATCAGCACTTAGCAACCCCTT
1 TCGGGGAATCAGCACTTAGCAACCCCTT
3790708 AGGGGAATCA
Statistics
Matches: 98, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
74 20 0.20
75 78 0.80
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.22
Consensus pattern (75 bp):
TCGGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAAC
CACCAATGAA
Found at i:3790690 original size:176 final size:176
Alignment explanation
Indices: 3790396--3790734 Score: 581
Period size: 176 Copynumber: 1.9 Consensus size: 176
3790386 TACCCGTTAT
*
3790396 CGGTGGATTCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCACTTTCAC
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCACTTTCAC
* *
3790461 ATTTAAGATACGGTGGGATCAGCACTTAGCAACCACCAATGATTCGGGGAATCAACACTTAGCAA
66 ATTTAAGATACGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAACACTTAGCAA
* *
3790526 CCCC-TCGGGAGAATCAGCACTTAGCAACTCCTTCACATTTAAGATA
131 CCCCTTAGGG-GAATCAGCACTTAGCAACCCCTTCACATTTAAGATA
* *
3790572 CGGTGGAATCAGCACTTTGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTTTCAC
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCACTTTCAC
* *
3790637 ATTTAATATACGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACTTAGCAA
66 ATTTAAGATACGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAACACTTAGCAA
3790702 CCCCTTAGGGGAATCAGCACTTAGCAACCCCTT
131 CCCCTTAGGGGAATCAGCACTTAGCAACCCCTT
3790735 TATATTCAAT
Statistics
Matches: 153, Mismatches: 9, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
176 149 0.97
177 4 0.03
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.21
Consensus pattern (176 bp):
CGGTGGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCACTTTCAC
ATTTAAGATACGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAACACTTAGCAA
CCCCTTAGGGGAATCAGCACTTAGCAACCCCTTCACATTTAAGATA
Found at i:3790712 original size:27 final size:27
Alignment explanation
Indices: 3790682--3790734 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
3790672 CCAATGAATC
3790682 GGGGAATCAGCACTTAGCAACCCCTTA
1 GGGGAATCAGCACTTAGCAACCCCTTA
3790709 GGGGAATCAGCACTTAGCAACCCCTT
1 GGGGAATCAGCACTTAGCAACCCCTT
3790735 TATATTCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.28, C:0.30, G:0.23, T:0.19
Consensus pattern (27 bp):
GGGGAATCAGCACTTAGCAACCCCTTA
Found at i:3792785 original size:24 final size:24
Alignment explanation
Indices: 3792757--3792976 Score: 107
Period size: 25 Copynumber: 8.9 Consensus size: 24
3792747 AAAACTCTAA
3792757 AGAGCCATTAA-CGGGAAGCTCAT
1 AGAGCCATTAATCGGGAAGCTCAT
* *
3792780 ACGAGCCA-AAATCGGGAAGCTCCAG
1 A-GAGCCATTAATCGGGAAGCT-CAT
* *
3792805 AGAGTCATTAATCAGGAAGCTCAT
1 AGAGCCATTAATCGGGAAGCTCAT
* *
3792829 GAAAGAGCCTTTAATCGGGAAGTTCA-
1 ---AGAGCCATTAATCGGGAAGCTCAT
* *
3792855 AGTGAGCCAAT-ATAGGGAAGCTCCGA-
1 A--GAGCCATTAATCGGGAAGCT-C-AT
* * * *
3792881 AAAGCCATTAATCAGTAAGCTCCT
1 AGAGCCATTAATCGGGAAGCTCAT
3792905 AAGAGCCAGTT-ATCGGGAAGCTCCGA-
1 -AGAGCCA-TTAATCGGGAAGCT-C-AT
**
3792931 AGAGCCAATT-ATTAGGAAGCTCAT
1 AGAGCC-ATTAATCGGGAAGCTCAT
*
3792955 AAGAGTCA-TAATCGGGAAGCTC
1 -AGAGCCATTAATCGGGAAGCTC
3792977 GCAAGAACCA
Statistics
Matches: 147, Mismatches: 29, Indels: 41
0.68 0.13 0.19
Matches are distributed among these distances:
23 6 0.04
24 50 0.34
25 66 0.45
26 6 0.04
27 19 0.13
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.19
Consensus pattern (24 bp):
AGAGCCATTAATCGGGAAGCTCAT
Found at i:3792862 original size:76 final size:75
Alignment explanation
Indices: 3792755--3792927 Score: 192
Period size: 76 Copynumber: 2.3 Consensus size: 75
3792745 GGAAAACTCT
* * *
3792755 AAAGAGCCATTAACGGGAAGCTCATACGAGCCAAAATCGGGAAGCTCC-AGAGAGTCATTAATCA
1 AAAGAGCCATTAACGGGAAGCTCATACGAGCCAAAATAGGGAAGCTCCGA-AAAGCCATTAATCA
3792819 GGAAGCTCATG
65 GGAAGCTCATG
* * * *
3792830 AAAGAGCCTTTAATCGGGAAGTTCA-AGTGAGCCAATATAGGGAAGCTCCGAAAAGCCATTAATC
1 AAAGAGCCATTAA-CGGGAAGCTCATA-CGAGCCAAAATAGGGAAGCTCCGAAAAGCCATTAATC
* *
3792894 AGTAAGCTCCT-
64 AGGAAGCTCATG
*
3792905 -AAGAGCCAGTTATCGGGAAGCTC
1 AAAGAGCCA-TTAACGGGAAGCTC
3792928 CGAAGAGCCA
Statistics
Matches: 82, Mismatches: 12, Indels: 9
0.80 0.12 0.09
Matches are distributed among these distances:
74 16 0.20
75 16 0.20
76 49 0.60
77 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.18
Consensus pattern (75 bp):
AAAGAGCCATTAACGGGAAGCTCATACGAGCCAAAATAGGGAAGCTCCGAAAAGCCATTAATCAG
GAAGCTCATG
Found at i:3792930 original size:50 final size:49
Alignment explanation
Indices: 3792869--3792976 Score: 137
Period size: 50 Copynumber: 2.2 Consensus size: 49
3792859 AGCCAATATA
* * *
3792869 GGGAAGCTCCGAAAAGCC-ATTAATCAGTAAGCTCCTAAGAGCCAGTTATC
1 GGGAAGCTCCGAAAAGCCAATT-ATCAGGAAGCTCATAAGAGCCA-TAATC
* * *
3792919 GGGAAGCTCCGAAGAGCCAATTATTAGGAAGCTCATAAGAGTCATAATC
1 GGGAAGCTCCGAAAAGCCAATTATCAGGAAGCTCATAAGAGCCATAATC
3792968 GGGAAGCTC
1 GGGAAGCTC
3792977 GCAAGAACCA
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
49 13 0.25
50 35 0.69
51 3 0.06
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.19
Consensus pattern (49 bp):
GGGAAGCTCCGAAAAGCCAATTATCAGGAAGCTCATAAGAGCCATAATC
Found at i:3795609 original size:12 final size:12
Alignment explanation
Indices: 3795592--3795642 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
3795582 TCGAATAAGC
3795592 ATGTATATATAT
1 ATGTATATATAT
3795604 ATGTATATATA-
1 ATGTATATATAT
*
3795615 ATGCTAGAATATAT
1 ATG-TA-TATATAT
**
3795629 ATACATATATAT
1 ATGTATATATAT
3795641 AT
1 AT
3795643 AAAAGTTATT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
11 3 0.09
12 21 0.66
13 6 0.19
14 2 0.06
ACGTcount: A:0.45, C:0.04, G:0.08, T:0.43
Consensus pattern (12 bp):
ATGTATATATAT
Found at i:3796420 original size:41 final size:40
Alignment explanation
Indices: 3796375--3796516 Score: 194
Period size: 41 Copynumber: 3.5 Consensus size: 40
3796365 AGGCTAAGCG
3796375 CCTAGCAGGCTTAATGCCGGTGATCTAAATCAGGTTATAAA
1 CCTAGCAGGC-TAATGCCGGTGATCTAAATCAGGTTATAAA
*
3796416 CCTAGCAGGCTACATGCCGGTGATCTGAATCAGGTTATAAA
1 CCTAGCAGGCTA-ATGCCGGTGATCTAAATCAGGTTATAAA
** * *
3796457 CCTAGCAGGCTTCGTGCCGGTGATCTAAATCAGGCTATAAG
1 CCTAGCAGGC-TAATGCCGGTGATCTAAATCAGGTTATAAA
*
3796498 TCTAGCAGGCTAAGTGCCG
1 CCTAGCAGGCTAA-TGCCG
3796517 TTGAATCTGT
Statistics
Matches: 89, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
40 3 0.03
41 85 0.96
42 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (40 bp):
CCTAGCAGGCTAATGCCGGTGATCTAAATCAGGTTATAAA
Found at i:3799573 original size:36 final size:36
Alignment explanation
Indices: 3799498--3799779 Score: 286
Period size: 36 Copynumber: 7.8 Consensus size: 36
3799488 GCCAGCAGAA
* * * * *
3799498 CGGCCAGACCCTGCACCATTGCTTG-AGCCAACAGGC
1 CGGCCAGGCCCAGTACCATTGCTAGCA-CCACCAGGC
* * * * *
3799534 CGGCCAGACCCTGCACCATTGCTAGCAGCACCAGCC
1 CGGCCAGGCCCAGTACCATTGCTAGCACCACCAGGC
* * * *
3799570 CGGCCAGGACCAGAACCACTGTTAGCACCACCAGGC
1 CGGCCAGGCCCAGTACCATTGCTAGCACCACCAGGC
* *
3799606 CGACCAGGCCCAGTACCATTGCTTA-CACCACCAGGT
1 CGGCCAGGCCCAGTACCATTGC-TAGCACCACCAGGC
* *
3799642 CGGCTAGGCCCGGTACCATTGCTAGCACCACCAGGC
1 CGGCCAGGCCCAGTACCATTGCTAGCACCACCAGGC
3799678 CGGCCAGGCCCCA-TACCATTGCTAGCACCACCAGGC
1 CGGCCAGG-CCCAGTACCATTGCTAGCACCACCAGGC
* *
3799714 TGGCCAGGCCCCA-TACCATTGCTAACACCACCAGGC
1 CGGCCAGG-CCCAGTACCATTGCTAGCACCACCAGGC
* *
3799750 CGGCCTGGCCCCA-TACCATTGCTAACACCA
1 CGGCCAGG-CCCAGTACCATTGCTAGCACCA
3799780 TGCTGCTTTC
Statistics
Matches: 214, Mismatches: 28, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
35 2 0.01
36 206 0.96
37 6 0.03
ACGTcount: A:0.23, C:0.41, G:0.22, T:0.13
Consensus pattern (36 bp):
CGGCCAGGCCCAGTACCATTGCTAGCACCACCAGGC
Found at i:3801568 original size:6 final size:6
Alignment explanation
Indices: 3801557--3801588 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
3801547 CCTGGTTTCT
*
3801557 TCTTCC TCTTCC TCTTCC TCTTCT TCTTCC TC
1 TCTTCC TCTTCC TCTTCC TCTTCC TCTTCC TC
3801589 CTCATATCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (6 bp):
TCTTCC
Found at i:3803834 original size:18 final size:18
Alignment explanation
Indices: 3803813--3803849 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
3803803 TTTTTACATA
3803813 TATTAATAAATTTATATT
1 TATTAATAAATTTATATT
3803831 TATTAATAAATTTATATT
1 TATTAATAAATTTATATT
3803849 T
1 T
3803850 TAAATTGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TATTAATAAATTTATATT
Found at i:3809269 original size:14 final size:14
Alignment explanation
Indices: 3809231--3809273 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
3809221 CAAAATGTAC
3809231 AATATAATTAAA-T
1 AATATAATTAAATT
3809244 AATATAAATTAAATT
1 AATAT-AATTAAATT
*
3809259 AA-ATAATTTAATT
1 AATATAATTAAATT
3809272 AA
1 AA
3809274 CTGATTACCC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 15 0.56
14 9 0.33
15 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AATATAATTAAATT
Found at i:3811072 original size:14 final size:15
Alignment explanation
Indices: 3811041--3811073 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
3811031 GGATTTTATA
*
3811041 TTTTATATTGTTTTG
1 TTTTATATTGTCTTG
3811056 TTTTATATTG-CTTG
1 TTTTATATTGTCTTG
3811070 TTTT
1 TTTT
3811074 GAATCTTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.12, C:0.03, G:0.12, T:0.73
Consensus pattern (15 bp):
TTTTATATTGTCTTG
Found at i:3813229 original size:13 final size:13
Alignment explanation
Indices: 3813211--3813273 Score: 65
Period size: 13 Copynumber: 4.8 Consensus size: 13
3813201 TCTTCATTGC
3813211 TTTTGAAAAGTGT
1 TTTTGAAAAGTGT
3813224 TTTTGAAAAGTG-
1 TTTTGAAAAGTGT
* * *
3813236 CTGTGAAAAAATGT
1 TTTTG-AAAAGTGT
* *
3813250 TTTTGAGAAGTGC
1 TTTTGAAAAGTGT
3813263 TTTTGAAAAGT
1 TTTTGAAAAGT
3813274 TTGGTTTAAA
Statistics
Matches: 39, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
12 3 0.08
13 33 0.85
14 3 0.08
ACGTcount: A:0.33, C:0.03, G:0.24, T:0.40
Consensus pattern (13 bp):
TTTTGAAAAGTGT
Found at i:3813271 original size:26 final size:26
Alignment explanation
Indices: 3813208--3813271 Score: 85
Period size: 26 Copynumber: 2.5 Consensus size: 26
3813198 AGTTCTTCAT
*
3813208 TGCTTTTGAAAAGTGTTTTTGAAAAG
1 TGCTTTTGAAAAATGTTTTTGAAAAG
* *
3813234 TGC-TGTGAAAAAATGTTTTTGAGAAG
1 TGCTTTTG-AAAAATGTTTTTGAAAAG
3813260 TGCTTTTGAAAA
1 TGCTTTTGAAAA
3813272 GTTTGGTTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
25 3 0.09
26 26 0.81
27 3 0.09
ACGTcount: A:0.33, C:0.05, G:0.23, T:0.39
Consensus pattern (26 bp):
TGCTTTTGAAAAATGTTTTTGAAAAG
Found at i:3814303 original size:14 final size:15
Alignment explanation
Indices: 3814278--3814306 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
3814268 ACTTTAAGTC
3814278 CAAAGAAAAACATAA
1 CAAAGAAAAACATAA
3814293 CAAAG-AAAACATAA
1 CAAAGAAAAACATAA
3814307 TGAATGCTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.72, C:0.14, G:0.07, T:0.07
Consensus pattern (15 bp):
CAAAGAAAAACATAA
Found at i:3830673 original size:15 final size:17
Alignment explanation
Indices: 3830644--3830675 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
3830634 AAACACCATT
3830644 AAAAATATTAGAAAATA
1 AAAAATATTAGAAAATA
3830661 AAAAAT-TTA-AAAATA
1 AAAAATATTAGAAAATA
3830676 TAATATATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 3 0.20
17 6 0.40
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (17 bp):
AAAAATATTAGAAAATA
Found at i:3830710 original size:14 final size:16
Alignment explanation
Indices: 3830671--3830710 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 16
3830661 AAAAATTTAA
*
3830671 AAATATAATATATAAT
1 AAATTTAATATATAAT
3830687 AAATTT-ATATA-AAT
1 AAATTTAATATATAAT
3830701 -AATTTAATAT
1 AAATTTAATAT
3830711 TTAAAAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
13 5 0.23
14 7 0.32
15 5 0.23
16 5 0.23
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
AAATTTAATATATAAT
Found at i:3830720 original size:20 final size:23
Alignment explanation
Indices: 3830664--3830721 Score: 59
Period size: 24 Copynumber: 2.6 Consensus size: 23
3830654 GAAAATAAAA
*
3830664 AATTTAAAAATATAATATATAAT
1 AATTTAAAAAAATAATATATAAT
* *
3830687 AAATTTATATAAATAAT-T-TAAT
1 -AATTTAAAAAAATAATATATAAT
3830709 -ATTTAAAAAAATA
1 AATTTAAAAAAATA
3830722 TTTTTCACTC
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
20 11 0.38
22 4 0.14
23 1 0.03
24 13 0.45
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (23 bp):
AATTTAAAAAAATAATATATAAT
Found at i:3838637 original size:14 final size:14
Alignment explanation
Indices: 3838620--3838649 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
3838610 AGTAAATCAA
3838620 TTTTAAAAAATATT
1 TTTTAAAAAATATT
*
3838634 TTTTAAAAATTATT
1 TTTTAAAAAATATT
3838648 TT
1 TT
3838650 CAGTGAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TTTTAAAAAATATT
Found at i:3844510 original size:17 final size:17
Alignment explanation
Indices: 3844488--3844530 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
3844478 ATATAGGAGG
3844488 AAAT-AGTGATACAATGA
1 AAATAAGTGATA-AATGA
3844505 AAATAGAGTGATAAATGA
1 AAATA-AGTGATAAATGA
*
3844523 AATTAAGT
1 AAATAAGT
3844531 AAAATCTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 7 0.30
18 9 0.39
19 7 0.30
ACGTcount: A:0.53, C:0.02, G:0.19, T:0.26
Consensus pattern (17 bp):
AAATAAGTGATAAATGA
Found at i:3845385 original size:15 final size:14
Alignment explanation
Indices: 3845365--3845405 Score: 55
Period size: 15 Copynumber: 2.8 Consensus size: 14
3845355 ATGTAAATGT
*
3845365 TTATAAATAGATAGA
1 TTATAAATAAATA-A
3845380 TTATAAATTAAATAA
1 TTATAAA-TAAATAA
3845395 TTATAAATAAA
1 TTATAAATAAA
3845406 CGATGATCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 4 0.17
15 15 0.62
16 5 0.21
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.37
Consensus pattern (14 bp):
TTATAAATAAATAA
Found at i:3860228 original size:6 final size:6
Alignment explanation
Indices: 3860176--3860215 Score: 80
Period size: 6 Copynumber: 6.7 Consensus size: 6
3860166 TTATTTTTAT
3860176 TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA TTAA
1 TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA TTAA
3860216 AATTTATTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
TTAATA
Found at i:3860245 original size:22 final size:23
Alignment explanation
Indices: 3860215--3860268 Score: 60
Period size: 22 Copynumber: 2.4 Consensus size: 23
3860205 ATTAATATTA
* *
3860215 AAATTTATTAT-TATATTTTTTT
1 AAATATATTATATATATTTCTTT
3860237 GAAA-ATATT-TATATATTTCTTT
1 -AAATATATTATATATATTTCTTT
3860259 AAATATATTA
1 AAATATATTA
3860269 GAATTAGAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
21 4 0.15
22 19 0.73
23 3 0.12
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (23 bp):
AAATATATTATATATATTTCTTT
Found at i:3860592 original size:19 final size:19
Alignment explanation
Indices: 3860570--3860612 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
3860560 TTATATGAAA
*
3860570 TTTTAAAAATTATTTTAAT
1 TTTTAAAAATAATTTTAAT
* * *
3860589 TTTTATATATAATTTTTAT
1 TTTTAAAAATAATTTTAAT
3860608 TTTTA
1 TTTTA
3860613 CATAATAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTTAAAAATAATTTTAAT
Found at i:3866446 original size:12 final size:12
Alignment explanation
Indices: 3866429--3866457 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
3866419 AATAAACACC
3866429 AATTTTTTAAAA
1 AATTTTTTAAAA
3866441 AA-TTTTTAAAA
1 AATTTTTTAAAA
3866452 AATTTT
1 AATTTT
3866458 AAAATATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
AATTTTTTAAAA
Found at i:3866448 original size:11 final size:11
Alignment explanation
Indices: 3866432--3866461 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
3866422 AAACACCAAT
3866432 TTTTTAAAAAA
1 TTTTTAAAAAA
3866443 TTTTTAAAAAA
1 TTTTTAAAAAA
3866454 -TTTTAAAA
1 TTTTTAAAA
3866462 TATAAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 8 0.42
11 11 0.58
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (11 bp):
TTTTTAAAAAA
Found at i:3866470 original size:9 final size:9
Alignment explanation
Indices: 3866458--3866482 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
3866448 AAAAAATTTT
3866458 AAAATATAA
1 AAAATATAA
3866467 AAAATATAA
1 AAAATATAA
3866476 AAAATAT
1 AAAATAT
3866483 TTTTTATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (9 bp):
AAAATATAA
Found at i:3867215 original size:7 final size:7
Alignment explanation
Indices: 3867203--3867228 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
3867193 GTTGAAAGAG
3867203 AATAATA
1 AATAATA
3867210 AATAATA
1 AATAATA
3867217 AATAATA
1 AATAATA
3867224 AATAA
1 AATAA
3867229 AGAAACATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (7 bp):
AATAATA
Found at i:3879283 original size:16 final size:16
Alignment explanation
Indices: 3879239--3879285 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
3879229 CAATAAACAG
3879239 AACAAAAAAGAAAAATA
1 AACAAAAAA-AAAAATA
* *
3879256 AACCAAACAAAAAATA
1 AACAAAAAAAAAAATA
*
3879272 AGCAAAAAAAAAAA
1 AACAAAAAAAAAAA
3879286 AACACGGAAG
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
16 18 0.72
17 7 0.28
ACGTcount: A:0.81, C:0.11, G:0.04, T:0.04
Consensus pattern (16 bp):
AACAAAAAAAAAAATA
Found at i:3884082 original size:24 final size:25
Alignment explanation
Indices: 3884054--3884100 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
3884044 TATCAATTGA
* *
3884054 AATTTAATTTTTAA-ATAAAAAAAG
1 AATTTAATTCTCAAGATAAAAAAAG
3884078 AATTTAATTCTCAAGATAAAAAA
1 AATTTAATTCTCAAGATAAAAAA
3884101 TAAATGGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.34
Consensus pattern (25 bp):
AATTTAATTCTCAAGATAAAAAAAG
Found at i:3895879 original size:16 final size:16
Alignment explanation
Indices: 3895875--3895929 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 16
3895865 TTTAAAATAT
*
3895875 TTTTAAAATA-CTTT-
1 TTTTAAAATATTTTTA
3895889 TTTTAAAAT-TTTTTA
1 TTTTAAAATATTTTTA
3895904 TTTTTAAAATACTTTTTTA
1 -TTTTAAAATA--TTTTTA
3895923 TTTTAAA
1 TTTTAAA
3895930 TTTTTTTTGG
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
14 12 0.35
16 9 0.26
18 7 0.21
19 6 0.18
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTTAAAATATTTTTA
Found at i:3895891 original size:30 final size:29
Alignment explanation
Indices: 3895857--3895929 Score: 80
Period size: 30 Copynumber: 2.5 Consensus size: 29
3895847 TTATTTTTTA
3895857 TTTTTTATTTTAAAATATTTTTAAAATAC
1 TTTTTTATTTTAAAATATTTTTAAAATAC
*
3895886 TTTTTTTAAAATTTT---TTATTTTTAAAATAC
1 -TTTTTT---ATTTTAAAATATTTTTAAAATAC
3895916 TTTTTTATTTTAAA
1 TTTTTTATTTTAAA
3895930 TTTTTTTTGG
Statistics
Matches: 36, Mismatches: 1, Indels: 13
0.72 0.02 0.26
Matches are distributed among these distances:
26 5 0.14
29 6 0.17
30 20 0.56
33 5 0.14
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (29 bp):
TTTTTTATTTTAAAATATTTTTAAAATAC
Found at i:3895902 original size:13 final size:14
Alignment explanation
Indices: 3895874--3895921 Score: 60
Period size: 14 Copynumber: 3.3 Consensus size: 14
3895864 TTTTAAAATA
3895874 TTTTTAAAATACTT
1 TTTTTAAAATACTT
**
3895888 TTTTTAAAATTTTTT
1 TTTTTAAAA-TACTT
3895903 ATTTTTAAAATACTT
1 -TTTTTAAAATACTT
3895918 TTTT
1 TTTT
3895922 ATTTTAAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 13 0.46
15 6 0.21
16 9 0.32
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (14 bp):
TTTTTAAAATACTT
Found at i:3895937 original size:16 final size:15
Alignment explanation
Indices: 3895886--3895937 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
3895876 TTTAAAATAC
*
3895886 TTTTTTTAAAATTTT
1 TTTTTTTTAAATTTT
*
3895901 TTATTTTTAAAATACTTT
1 TT-TTTTTTAAAT--TTT
*
3895919 TTTATTTTAAATTTT
1 TTTTTTTTAAATTTT
3895934 TTTT
1 TTTT
3895938 GGTGTTTATT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
15 8 0.26
16 10 0.32
17 8 0.26
18 5 0.16
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (15 bp):
TTTTTTTTAAATTTT
Found at i:3900046 original size:27 final size:27
Alignment explanation
Indices: 3900013--3900079 Score: 107
Period size: 27 Copynumber: 2.5 Consensus size: 27
3900003 TTTGGTTAAA
* *
3900013 AATTAACCGAATTACTCGAATTACCCG
1 AATTAACCGAATTACCCGAATTAACCG
3900040 AATTAACCGAATTACCCGAATTAACCG
1 AATTAACCGAATTACCCGAATTAACCG
*
3900067 AATTAACCAAATT
1 AATTAACCGAATT
3900080 GAATCACTAC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.42, C:0.24, G:0.09, T:0.25
Consensus pattern (27 bp):
AATTAACCGAATTACCCGAATTAACCG
Found at i:3900072 original size:9 final size:9
Alignment explanation
Indices: 3900013--3900079 Score: 91
Period size: 9 Copynumber: 7.4 Consensus size: 9
3900003 TTTGGTTAAA
3900013 AATTAACCG
1 AATTAACCG
3900022 AATT-ACTCG
1 AATTAAC-CG
*
3900031 AATTACCCG
1 AATTAACCG
3900040 AATTAACCG
1 AATTAACCG
*
3900049 AATTACCCG
1 AATTAACCG
3900058 AATTAACCG
1 AATTAACCG
*
3900067 AATTAACCA
1 AATTAACCG
3900076 AATT
1 AATT
3900080 GAATCACTAC
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
8 2 0.04
9 48 0.94
10 1 0.02
ACGTcount: A:0.42, C:0.24, G:0.09, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:3902210 original size:90 final size:90
Alignment explanation
Indices: 3902097--3902403 Score: 413
Period size: 90 Copynumber: 3.4 Consensus size: 90
3902087 GACTAAAAAC
* * *
3902097 AACAGATCTTATCTTCCTGTATTGGCAGCAAAGTAGATCGTAGATAGCAAGTCTTGTTTTTCTGT
1 AACAGATCTTATCTTCCTGTATTGGCAGCAAAGTAGATCGAAGATAGCAAGTCTTGTCTTCCTGT
* *
3902162 ATTGGTAGCGAAGTAGACTGAAGAT
66 ATTGGTAGTGAAGTAGAGTGAAGAT
*
3902187 AACAGATCTTATCTTCCTGTATTGGCAGTAAAGTAGATCGAAGATAGCAAGTCTTGTCTTCCTGT
1 AACAGATCTTATCTTCCTGTATTGGCAGCAAAGTAGATCGAAGATAGCAAGTCTTGTCTTCCTGT
*
3902252 ATTGGCAGTGAAGTAGAGTGAAGAT
66 ATTGGTAGTGAAGTAGAGTGAAGAT
* * *
3902277 AGCAGATCTTATCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCATA-TCTTGTCTCCCTG
1 AACAGATCTTATCTTCCTGTATTGGCAGCAAAGTAGATCGAAGATAGCA-AGTCTTGTCTTCCTG
*** *
3902341 -AGCAGTAGTGGAGTAG-GTCGAAGAT
65 TATTGGTAGTGAAGTAGAGT-GAAGAT
*** *
3902366 TGTAGATCTTGTCTTCCTGTATTGGCAGCAAAGTAGAT
1 AACAGATCTTATCTTCCTGTATTGGCAGCAAAGTAGAT
3902404 TAGAGATTGG
Statistics
Matches: 195, Mismatches: 20, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
88 2 0.01
89 51 0.26
90 141 0.72
91 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.32
Consensus pattern (90 bp):
AACAGATCTTATCTTCCTGTATTGGCAGCAAAGTAGATCGAAGATAGCAAGTCTTGTCTTCCTGT
ATTGGTAGTGAAGTAGAGTGAAGAT
Found at i:3902412 original size:45 final size:45
Alignment explanation
Indices: 3902099--3902403 Score: 323
Period size: 45 Copynumber: 6.8 Consensus size: 45
3902089 CTAAAAACAA
* * *
3902099 CAGATCTTATCTTCCTGTATTGGCAGCAAAGTAGATCGTAGATAG
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAG
* * * *
3902144 CA-AGTCTTGTTTTTCTGTATTGGTAGCGAAGTAGA-CTGAAGATAA
1 CAGA-TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC-GAAGATAG
* **
3902189 CAGATCTTATCTTCCTGTATTGGCAGTAAAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAG
*
3902234 CA-AGTCTTGTCTTCCTGTATTGGCAGTGAAGTAGAGT-GAAGATAG
1 CAGA-TCTTGTCTTCCTGTATTGGCAGCGAAGTAGA-TCGAAGATAG
*
3902279 CAGATCTTATCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAG
* * *** * * * * *
3902324 CATATCTTGTCTCCCTG-AGCAGTAGTGGAGTAGGTCGAAGATTG
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAG
* *
3902368 TAGATCTTGTCTTCCTGTATTGGCAGCAAAGTAGAT
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGAT
3902404 TAGAGATTGG
Statistics
Matches: 211, Mismatches: 40, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
44 37 0.18
45 170 0.81
46 4 0.02
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.32
Consensus pattern (45 bp):
CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAG
Found at i:3904618 original size:106 final size:106
Alignment explanation
Indices: 3904394--3904619 Score: 371
Period size: 106 Copynumber: 2.1 Consensus size: 106
3904384 ACAAAAAATG
*
3904394 AAAATTTCAAAGTAAGACAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGG
1 AAAATTTCAAAGTAAGACAATATTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAACGTGCTGG
* * * *
3904459 GTTTCGATTTCTCGTTCGACCAAATAGCTAAATATCCTTTT
66 ATTTCGATTTCTCGTTCAACCAAATAGCCAAATATCCTCTT
** *
3904500 AAGGTTTCAAAGTAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAACGTGCTGG
1 AAAATTTCAAAGTAAGACAATATTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAACGTGCTGG
3904565 ATTTCGATTTCTCGTTCAACCAAATAGCCAAATATCCTCTT
66 ATTTCGATTTCTCGTTCAACCAAATAGCCAAATATCCTCTT
*
3904606 AAAATTTTAAAGTA
1 AAAATTTCAAAGTA
3904620 TGGGTTGTGG
Statistics
Matches: 109, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
106 109 1.00
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (106 bp):
AAAATTTCAAAGTAAGACAATATTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAACGTGCTGG
ATTTCGATTTCTCGTTCAACCAAATAGCCAAATATCCTCTT
Found at i:3907219 original size:16 final size:18
Alignment explanation
Indices: 3907181--3907221 Score: 59
Period size: 16 Copynumber: 2.4 Consensus size: 18
3907171 ATATGTCATT
3907181 TTTTGTTTGCTTTTGATA
1 TTTTGTTTGCTTTTGATA
*
3907199 TTTTGTTT-CTTTTTA-A
1 TTTTGTTTGCTTTTGATA
3907215 TTTTGTT
1 TTTTGTT
3907222 GATAATTTCG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.36
17 6 0.27
18 8 0.36
ACGTcount: A:0.10, C:0.05, G:0.12, T:0.73
Consensus pattern (18 bp):
TTTTGTTTGCTTTTGATA
Found at i:3908105 original size:9 final size:9
Alignment explanation
Indices: 3908091--3908121 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
3908081 GTTAAACGAA
3908091 TCGAGTTAT
1 TCGAGTTAT
*
3908100 TCGAGTTAA
1 TCGAGTTAT
3908109 TCGAGTTAT
1 TCGAGTTAT
3908118 TCGA
1 TCGA
3908122 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:3909228 original size:5 final size:5
Alignment explanation
Indices: 3909218--3909243 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
3909208 CTCGAAAATT
3909218 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
3909244 CGAATGCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:3914261 original size:30 final size:32
Alignment explanation
Indices: 3914216--3914276 Score: 92
Period size: 31 Copynumber: 2.0 Consensus size: 32
3914206 AGACAGTATA
3914216 AAAAGTCAAATG-TTTTGCACT-TTATTTTTG
1 AAAAGTCAAATGTTTTTGCACTGTTATTTTTG
3914246 AAAA-TCAAATTGTTTTTGCACTGTTATTTTT
1 AAAAGTCAAA-TGTTTTTGCACTGTTATTTTT
3914277 ACCCTTCTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
29 5 0.18
30 6 0.21
31 9 0.32
32 8 0.29
ACGTcount: A:0.30, C:0.10, G:0.11, T:0.49
Consensus pattern (32 bp):
AAAAGTCAAATGTTTTTGCACTGTTATTTTTG
Found at i:3916924 original size:15 final size:14
Alignment explanation
Indices: 3916900--3916929 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
3916890 TTATACATAA
3916900 TTTTGTGTTTAATT
1 TTTTGTGTTTAATT
3916914 TTTTAGTGTTTAATT
1 TTTT-GTGTTTAATT
3916929 T
1 T
3916930 AGTTTTGAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.17, C:0.00, G:0.13, T:0.70
Consensus pattern (14 bp):
TTTTGTGTTTAATT
Found at i:3917864 original size:23 final size:21
Alignment explanation
Indices: 3917814--3917865 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 21
3917804 AGAATAGATA
*
3917814 AATATAAATATAATTATAATT
1 AATATCAATATAATTATAATT
*
3917835 ACA-ATCAATATATTTATTTAATT
1 A-ATATCAATATAATTA--TAATT
3917858 AATATCAA
1 AATATCAA
3917866 AATCAAGTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
21 12 0.48
22 2 0.08
23 11 0.44
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (21 bp):
AATATCAATATAATTATAATT
Found at i:3920540 original size:31 final size:30
Alignment explanation
Indices: 3920471--3920540 Score: 86
Period size: 31 Copynumber: 2.3 Consensus size: 30
3920461 AGGTCAATTT
* *
3920471 GGGTGTGTAGGCCACACGGGAATGACACAT
1 GGGTGTGTGGGCCACACGGGAATGACACAC
* * *
3920501 TGGCGTGTGGGCCCACACGGGCATGACACAC
1 GGGTGTGTGGG-CCACACGGGAATGACACAC
3920532 GGGTGTGTG
1 GGGTGTGTG
3920541 AACTGTGGGC
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
30 8 0.25
31 24 0.75
ACGTcount: A:0.20, C:0.23, G:0.40, T:0.17
Consensus pattern (30 bp):
GGGTGTGTGGGCCACACGGGAATGACACAC
Found at i:3923147 original size:3 final size:3
Alignment explanation
Indices: 3923139--3923184 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
3923129 ATAAAATTTT
3923139 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
3923185 ATGAGATATA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:3923937 original size:21 final size:21
Alignment explanation
Indices: 3923898--3923939 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
3923888 AGTTTTAGGT
*
3923898 TTAGTTTTCTCTAGGTTTTTC
1 TTAGTTTTCTCTACGTTTTTC
*
3923919 TTAGTTTTCTGTAC-TTTTTC
1 TTAGTTTTCTCTACGTTTTTC
3923939 T
1 T
3923940 AGGGTTTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.10, C:0.14, G:0.12, T:0.64
Consensus pattern (21 bp):
TTAGTTTTCTCTACGTTTTTC
Found at i:3926090 original size:39 final size:39
Alignment explanation
Indices: 3926033--3926107 Score: 132
Period size: 39 Copynumber: 1.9 Consensus size: 39
3926023 TGATATTGAT
3926033 GTTAATTTTTTTGAGTATACTGATAGTAATTATGCATGG
1 GTTAATTTTTTTGAGTATACTGATAGTAATTATGCATGG
* *
3926072 GTTAATTTTTTTGGGTATATTGATAGTAATTATGCA
1 GTTAATTTTTTTGAGTATACTGATAGTAATTATGCA
3926108 GGGGATATTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.28, C:0.04, G:0.20, T:0.48
Consensus pattern (39 bp):
GTTAATTTTTTTGAGTATACTGATAGTAATTATGCATGG
Found at i:3930148 original size:21 final size:21
Alignment explanation
Indices: 3930122--3930165 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
3930112 TTTTGAATGG
3930122 AAGGGAATCTTATGGTCTTGC
1 AAGGGAATCTTATGGTCTTGC
3930143 AAGGGAATCTTATGGTCTTGC
1 AAGGGAATCTTATGGTCTTGC
3930164 AA
1 AA
3930166 CCGAGATGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.32
Consensus pattern (21 bp):
AAGGGAATCTTATGGTCTTGC
Found at i:3935420 original size:72 final size:72
Alignment explanation
Indices: 3935334--3935499 Score: 248
Period size: 72 Copynumber: 2.3 Consensus size: 72
3935324 AACAACAATG
* *
3935334 CTAAA-CTAGTTTTATCAATAGTTATTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTATTT
1 CTAAATCTAGTTTTATCAATAGTTATTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTACTT
3935398 ATTTAT-
66 ATTTATA
* * * *
3935404 GTGTAATCTAGTTTTATTAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTACT
1 CT-AAATCTAGTTTTATCAATAGTTATTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTACT
3935469 TATTTATA
65 TATTTATA
3935477 CTAAAT-TAGTTTTATCAATAGTT
1 CTAAATCTAGTTTTATCAATAGTT
3935500 GTTAATATGA
Statistics
Matches: 84, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
70 1 0.01
71 18 0.21
72 64 0.76
73 1 0.01
ACGTcount: A:0.26, C:0.06, G:0.14, T:0.54
Consensus pattern (72 bp):
CTAAATCTAGTTTTATCAATAGTTATTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTACTT
ATTTATA
Found at i:3937277 original size:8 final size:8
Alignment explanation
Indices: 3937266--3937293 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
3937256 TTTAATTTTT
3937266 ATATTTAA
1 ATATTTAA
3937274 ATATTTAA
1 ATATTTAA
3937282 ATATTTAA
1 ATATTTAA
3937290 ATAT
1 ATAT
3937294 AGTTTATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (8 bp):
ATATTTAA
Found at i:3937566 original size:13 final size:13
Alignment explanation
Indices: 3937548--3937585 Score: 76
Period size: 13 Copynumber: 2.9 Consensus size: 13
3937538 ACACTCAAAT
3937548 TTCTCAAAAGCAC
1 TTCTCAAAAGCAC
3937561 TTCTCAAAAGCAC
1 TTCTCAAAAGCAC
3937574 TTCTCAAAAGCA
1 TTCTCAAAAGCA
3937586 ATAAAGAACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.39, C:0.29, G:0.08, T:0.24
Consensus pattern (13 bp):
TTCTCAAAAGCAC
Found at i:3938695 original size:256 final size:258
Alignment explanation
Indices: 3938224--3938739 Score: 937
Period size: 256 Copynumber: 2.0 Consensus size: 258
3938214 GTTAGAGCAA
*
3938224 TAAGGAAAACAGAAGAAGAAAAAAAAGGAGAAAGGGAGAGAAGTTTAGTACAACTTTTTTGTGTA
1 TAAGGAAAACA-AAGAAGAAAAAAAAGGAGAAAGGGAGAGAAGTTTACTACAACTTTTTTGTGTA
*
3938289 TGTATTTTGATAACCACCTTTCCTTACAGCTAGAGTTTAAAAGAAAGAGAAAGTAGACGTGGCAA
65 TGTATTTTGATAACCACCTTTCCTTACAGCTAGAGTTTAAAAGAAAGAGAAAGTAAACGTGGCAA
* *
3938354 AGTTAGTTATAATCGCCAGCTAGTCCGTTGATGCTGTCACCATTTCACTAAAGACATTACCCCTT
130 AGTTAGTTACAATCGCCAGCTAGTCCGTTGATGCTGCCACCATTTCACTAAAGACATTACCCCTT
*
3938419 AATTCTAACGCACTGTTTCATCCCATACATCATATTTTCCTGATTTAAATTCTACCCATAACAT
195 AATTCTAACGCACCGTTTCATCCCATACATCATATTTTCCTGATTTAAATTCTACCCATAACAT
* *
3938483 TAAGGAAAAC-AA-AAGAAAAAAAAGGAGAAAGGGAGAGAAGTTTTCTGCAACTTTTTTGTGTAT
1 TAAGGAAAACAAAGAAGAAAAAAAAGGAGAAAGGGAGAGAAGTTTACTACAACTTTTTTGTGTAT
3938546 GTATTTTGATAACCACCTTTCCTTACAGCTAGAGTTTAAAAGAAAGAGAAAGTAAACGTGGCAAA
66 GTATTTTGATAACCACCTTTCCTTACAGCTAGAGTTTAAAAGAAAGAGAAAGTAAACGTGGCAAA
3938611 GTTAGTTACAATCGCCAGCTAGTCCGTTGATGCTGCCACCATTTCACTAAAGACATTACCCCTTA
131 GTTAGTTACAATCGCCAGCTAGTCCGTTGATGCTGCCACCATTTCACTAAAGACATTACCCCTTA
*
3938676 ATTCTAACGCACCGTTTCATCCCATACATCATATTTTCCTGATTTAAATTCTACTCATAACAT
196 ATTCTAACGCACCGTTTCATCCCATACATCATATTTTCCTGATTTAAATTCTACCCATAACAT
3938739 T
1 T
3938740 TACTTTAGGC
Statistics
Matches: 249, Mismatches: 8, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
256 237 0.95
257 2 0.01
259 10 0.04
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (258 bp):
TAAGGAAAACAAAGAAGAAAAAAAAGGAGAAAGGGAGAGAAGTTTACTACAACTTTTTTGTGTAT
GTATTTTGATAACCACCTTTCCTTACAGCTAGAGTTTAAAAGAAAGAGAAAGTAAACGTGGCAAA
GTTAGTTACAATCGCCAGCTAGTCCGTTGATGCTGCCACCATTTCACTAAAGACATTACCCCTTA
ATTCTAACGCACCGTTTCATCCCATACATCATATTTTCCTGATTTAAATTCTACCCATAACAT
Found at i:3948552 original size:6 final size:6
Alignment explanation
Indices: 3948541--3948565 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
3948531 AGAAATAGAT
3948541 GGTGGA GGTGGA GGTGGA GGTGGA G
1 GGTGGA GGTGGA GGTGGA GGTGGA G
3948566 AGGATTAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.68, T:0.16
Consensus pattern (6 bp):
GGTGGA
Found at i:3948753 original size:63 final size:64
Alignment explanation
Indices: 3948681--3948804 Score: 153
Period size: 65 Copynumber: 1.9 Consensus size: 64
3948671 AGATAACTCA
* ** * *
3948681 TTTCTTTAAAGTGAATTTAGATA-ACACTTATTTAAAGTGGCTTTACCTCTT-TAAGGTAATTCG
1 TTTCTTTAAAGCGAACCTAGATACACACTTATTTAAAGCGACTTTACCT-TTGTAAGGTAATTCG
* *
3948744 TTTCTTTAAAGCGGACCTAGATAGCACACTTCTTTAAAGCGACTTTACCTTTGTAAGGTAA
1 TTTCTTTAAAGCGAACCTAGATA-CACACTTATTTAAAGCGACTTTACCTTTGTAAGGTAA
3948805 CACACTTATT
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
63 19 0.37
64 2 0.04
65 30 0.59
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39
Consensus pattern (64 bp):
TTTCTTTAAAGCGAACCTAGATACACACTTATTTAAAGCGACTTTACCTTTGTAAGGTAATTCG
Found at i:3948880 original size:79 final size:79
Alignment explanation
Indices: 3948745--3948894 Score: 212
Period size: 79 Copynumber: 1.9 Consensus size: 79
3948735 GGTAATTCGT
* *
3948745 TTCTTTAAAGCGGACCTAGATAGCACACTTCTTTAAAGCGACTTTACCTTTGTAAGGTAACACAC
1 TTCTTTAAAGCGAACCTAGATAACACACTTCTTTAAAGCGACTTTACCTTTGTAAGGTAACACAC
3948810 TTATTTAAACATGC
66 TTATTTAAACATGC
* * * ** *
3948824 TTCTTTAAAGCGAACTTAGATAACACACTTTTTTAAAGTGGTTTTACCTCTT-TAAGGTAACACG
1 TTCTTTAAAGCGAACCTAGATAACACACTTCTTTAAAGCGACTTTACCT-TTGTAAGGTAACACA
3948888 CTTATTT
65 CTTATTT
3948895 TAAAACGAAC
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
79 60 0.97
80 2 0.03
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (79 bp):
TTCTTTAAAGCGAACCTAGATAACACACTTCTTTAAAGCGACTTTACCTTTGTAAGGTAACACAC
TTATTTAAACATGC
Found at i:3948905 original size:66 final size:65
Alignment explanation
Indices: 3948827--3948953 Score: 191
Period size: 66 Copynumber: 1.9 Consensus size: 65
3948817 AACATGCTTC
* * *
3948827 TTTAAAGCGAACTTAGATAACACACTTTTTTAAAGTGGTTTTACCTCTTTAAGGTAACACGCTTA
1 TTTAAAACGAACTTAGATAACACACTTCTTTAAAGTGGCTTTACCT-TTTAAGGTAACACGCTTA
3948892 T
65 T
* * *
3948893 TTTAAAACGAACTTAGATAGCCCACTTCTTTAAAGTGGCTTTACCTTTTAAGGTAATACGC
1 TTTAAAACGAACTTAGATAACACACTTCTTTAAAGTGGCTTTACCTTTTAAGGTAACACGC
3948954 CATTTGATGA
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
65 14 0.25
66 41 0.75
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (65 bp):
TTTAAAACGAACTTAGATAACACACTTCTTTAAAGTGGCTTTACCTTTTAAGGTAACACGCTTAT
Found at i:3948945 original size:144 final size:142
Alignment explanation
Indices: 3948682--3948948 Score: 376
Period size: 144 Copynumber: 1.9 Consensus size: 142
3948672 GATAACTCAT
* * **
3948682 TTCTTTAAAGTGAATTTAGATAACACTTATTTAAAGTGGCTTTACCTCTTTAAGGTAATTCGTTT
1 TTCTTTAAAGCGAACTTAGATAACACTTATTTAAAGTGGCTTTACCTCTTTAAGGTAACACGTTT
* *
3948747 CTTTAAAGCGGACCTAGATAGCACACTTCTTTAAAGCGACTTTACCTTTGTAAGGTAACACACTT
66 CTTTAAAACGAACCTAGATAGCACACTTCTTTAAAGCGACTTTACCTTTGTAAGGTAACACACTT
3948812 ATTTAAACATGC
131 ATTTAAACATGC
* *
3948824 TTCTTTAAAGCGAACTTAGATAACACACTTTTTTAAAGTGGTTTTACCTCTTTAAGGTAACACGC
1 TTCTTTAAAGCGAACTTAGAT-A-ACACTTATTTAAAGTGGCTTTACCTCTTTAAGGTAACACG-
* * * *
3948889 TTAT-TTTAAAACGAACTTAGATAGCCCACTTCTTTAAAGTGGCTTTACCTTT-TAAGGTAA
63 TT-TCTTTAAAACGAACCTAGATAGCACACTTCTTTAAAGCGACTTTACCTTTGTAAGGTAA
3948949 TACGCCATTT
Statistics
Matches: 109, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
142 19 0.17
143 1 0.01
144 44 0.40
145 44 0.40
146 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (142 bp):
TTCTTTAAAGCGAACTTAGATAACACTTATTTAAAGTGGCTTTACCTCTTTAAGGTAACACGTTT
CTTTAAAACGAACCTAGATAGCACACTTCTTTAAAGCGACTTTACCTTTGTAAGGTAACACACTT
ATTTAAACATGC
Found at i:3949755 original size:14 final size:13
Alignment explanation
Indices: 3949697--3949763 Score: 82
Period size: 13 Copynumber: 5.1 Consensus size: 13
3949687 TTTAAACCAA
3949697 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
*
3949710 ACTTCTCAAAAGC
1 ACTTTTCAAAAGC
* *
3949723 ATTTTTCCACAA-C
1 ACTTTT-CAAAAGC
3949736 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
3949749 ACTTTTTCAAAAGC
1 AC-TTTTCAAAAGC
3949763 A
1 A
3949764 ATGAAGAACT
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
12 4 0.09
13 25 0.56
14 16 0.36
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.31
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:3956899 original size:60 final size:60
Alignment explanation
Indices: 3956825--3956993 Score: 250
Period size: 60 Copynumber: 2.8 Consensus size: 60
3956815 CTCCTTGAGT
3956825 CCACAACCACTGCTATTCACCATGCTTCCACAACCTCCGCCGCACCCACCACAGCCAGAG
1 CCACAACCACTGCTATTCACCATGCTTCCACAACCTCCGCCGCACCCACCACAGCCAGAG
* * *
3956885 CCACAGCCACTGCTATTCACCATGCTTCCGCAACCTCCGCCACACCCACCACAGCCAGAG
1 CCACAACCACTGCTATTCACCATGCTTCCACAACCTCCGCCGCACCCACCACAGCCAGAG
** * * *
3956945 CCACAACTGCCGCTATTCACTATGCTTCCACAA-CTACCCCCGCACCCAC
1 CCACAACCACTGCTATTCACCATGCTTCCACAACCT-CCGCCGCACCCAC
3956994 TACCGCAACC
Statistics
Matches: 97, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
59 2 0.02
60 95 0.98
ACGTcount: A:0.25, C:0.49, G:0.11, T:0.15
Consensus pattern (60 bp):
CCACAACCACTGCTATTCACCATGCTTCCACAACCTCCGCCGCACCCACCACAGCCAGAG
Found at i:3957017 original size:12 final size:12
Alignment explanation
Indices: 3957002--3957032 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
3956992 ACTACCGCAA
3957002 CCACCACCACAG
1 CCACCACCACAG
3957014 CCACCACCACAG
1 CCACCACCACAG
3957026 CCACCAC
1 CCACCAC
3957033 TCTTCACCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.32, C:0.61, G:0.06, T:0.00
Consensus pattern (12 bp):
CCACCACCACAG
Found at i:3957087 original size:54 final size:56
Alignment explanation
Indices: 3957017--3957197 Score: 177
Period size: 54 Copynumber: 3.1 Consensus size: 56
3957007 ACCACAGCCA
3957017 CCACCACAGCCACCACTCTTCACCATGTTTCCACATCCAGCACCACAACCACCG-G
1 CCACCACAGCCACCACTCTTCACCATGTTTCCACATCCAGCACCACAACCACCGAG
* * * * * * * * *
3957072 -CACCGCAGCCGCCACTATTCACTATGCTTCCACAACCACCCCCACATCCACTACCGCAG
1 CCACCACAGCCACCACTCTTCACCATGTTTCCACATCCAGCACCACA---ACCACCG-AG
* *
3957131 CCACTACCACAACCACCACTCTTCACCACGTTTCCACATCCAGCACCACAACCACCGCAG
1 -C-C-ACCACAGCCACCACTCTTCACCATGTTTCCACATCCAGCACCACAACCACCG-AG
3957191 CCACCAC
1 CCACCAC
3957198 TGCTTACCGT
Statistics
Matches: 97, Mismatches: 20, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
54 38 0.39
57 11 0.11
58 1 0.01
59 2 0.02
60 9 0.09
62 1 0.01
63 35 0.36
ACGTcount: A:0.28, C:0.50, G:0.08, T:0.14
Consensus pattern (56 bp):
CCACCACAGCCACCACTCTTCACCATGTTTCCACATCCAGCACCACAACCACCGAG
Found at i:3961578 original size:21 final size:21
Alignment explanation
Indices: 3961554--3961593 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
3961544 AATTCTTCAA
*
3961554 TATTCATTTATAATTTATAAT
1 TATTCATTAATAATTTATAAT
* *
3961575 TATTTATTAATATTTTATA
1 TATTCATTAATAATTTATA
3961594 TATATTATTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (21 bp):
TATTCATTAATAATTTATAAT
Found at i:3961599 original size:21 final size:20
Alignment explanation
Indices: 3961552--3961599 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
3961542 TTAATTCTTC
*
3961552 AATATTCATTTATAATTTAT
1 AATATTCATTAATAATTTAT
* *
3961572 AATTATTTATTAATATTTTAT
1 AA-TATTCATTAATAATTTAT
3961593 ATATATT
1 A-ATATT
3961600 ATTTTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 2 0.09
21 20 0.87
22 1 0.04
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (20 bp):
AATATTCATTAATAATTTAT
Found at i:3962712 original size:14 final size:14
Alignment explanation
Indices: 3962676--3962712 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
3962666 TGCAACCATT
*
3962676 TTACTATTATGTTG
1 TTACTATTTTGTTG
3962690 TTACTATTTTGTTG
1 TTACTATTTTGTTG
*
3962704 TTATTATTT
1 TTACTATTT
3962713 AGATATTGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.19, C:0.05, G:0.11, T:0.65
Consensus pattern (14 bp):
TTACTATTTTGTTG
Found at i:3962867 original size:21 final size:21
Alignment explanation
Indices: 3962826--3962869 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
3962816 TTTTTGATGT
* *
3962826 ATTATATATATATATATTAAA
1 ATTATATAAAAATATATTAAA
*
3962847 ATTATATAAAAATAATATAAAA
1 ATTATATAAAAAT-ATATTAAA
3962869 A
1 A
3962870 GTAATATGGG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (21 bp):
ATTATATAAAAATATATTAAA
Found at i:3967628 original size:42 final size:41
Alignment explanation
Indices: 3967581--3967688 Score: 126
Period size: 41 Copynumber: 2.6 Consensus size: 41
3967571 ATAAACGCCG
* * *
3967581 CTAAAGATCATGTTCTTTAGCGGCGTTTTTTCTGAAGTGCCA
1 CTAAAGAACATGATCTTTAGCGGCGTTTTTT-TGAACTGCCA
* * * **
3967623 CTAAAGAACATAATCTTTAGCAGCGTTTTTTTGGACTGCTG
1 CTAAAGAACATGATCTTTAGCGGCGTTTTTTTGAACTGCCA
*
3967664 CTAACGAACATGATCTTTAGCGGCG
1 CTAAAGAACATGATCTTTAGCGGCG
3967689 CTTCTAAAAA
Statistics
Matches: 55, Mismatches: 11, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
41 28 0.51
42 27 0.49
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.34
Consensus pattern (41 bp):
CTAAAGAACATGATCTTTAGCGGCGTTTTTTTGAACTGCCA
Found at i:3967824 original size:41 final size:42
Alignment explanation
Indices: 3967663--3967859 Score: 243
Period size: 42 Copynumber: 4.7 Consensus size: 42
3967653 TTGGACTGCT
* * * *
3967663 GCTAACGAACATGATCTTTAGCGGCGCTTCTAAAAAAGACGCC
1 GCTAAAGATCATGTTCTTTAGCGGCGCTTC-AAAAAAAACGCC
* * **
3967706 GCTGAAGATCATGTTCTTTAACGGCGCTAAAAAAAAAACGCC
1 GCTAAAGATCATGTTCTTTAGCGGCGCTTCAAAAAAAACGCC
* * * *
3967748 GCTAAAGTTCATGTTTTTTAGTGGCGCTTCAAAAAAAATGCC
1 GCTAAAGATCATGTTCTTTAGCGGCGCTTCAAAAAAAACGCC
*
3967790 GCTAAAGATCATGTTCTTTAGCGGCGCTTCAAAAAAAACGCT
1 GCTAAAGATCATGTTCTTTAGCGGCGCTTCAAAAAAAACGCC
* *
3967832 ACTAAAGA-AATGTTCTTTAGCGGCGCTT
1 GCTAAAGATCATGTTCTTTAGCGGCGCTT
3967860 TATTCACAAA
Statistics
Matches: 131, Mismatches: 23, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
41 19 0.15
42 89 0.68
43 23 0.18
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (42 bp):
GCTAAAGATCATGTTCTTTAGCGGCGCTTCAAAAAAAACGCC
Found at i:3972087 original size:44 final size:44
Alignment explanation
Indices: 3972023--3972114 Score: 141
Period size: 44 Copynumber: 2.1 Consensus size: 44
3972013 ATCGGGTTTG
*
3972023 GGGAAATATGGATTAAGGGAAATTGTAGGGA-TTTGAGGGGGAAT
1 GGGAAATATGGATTAAGGGAAATTGTAGGGATTTTG-GGGAGAAT
* *
3972067 GGGAAATATGGATTAGGGGAAATTTTAGGGATTTTGGGGAGAAT
1 GGGAAATATGGATTAAGGGAAATTGTAGGGATTTTGGGGAGAAT
3972111 GGGA
1 GGGA
3972115 TTTTGGGGGA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
44 40 0.91
45 4 0.09
ACGTcount: A:0.33, C:0.00, G:0.41, T:0.26
Consensus pattern (44 bp):
GGGAAATATGGATTAAGGGAAATTGTAGGGATTTTGGGGAGAAT
Found at i:3972460 original size:148 final size:147
Alignment explanation
Indices: 3972294--3972576 Score: 422
Period size: 148 Copynumber: 1.9 Consensus size: 147
3972284 GCGCTTAGAG
* *
3972294 TAAAAACGCCACTAATAACATGGACAAAACGACACCGTTATAAGGTAACATTAAACATTTTTACG
1 TAAAAACGCCACTAATAACATAGACAAAACGACACCGTTATAAGATAACATTAAACATTTTTACG
* * * * *
3972359 GCGTTTTATCTAAAGCGCCACTAATAAAAATAGGAAACGGCGCCGTTACCTCAACCCCTATTAAA
66 GCATATTAGCT-AAGCGCCACTAATAAAAATAGGAAACGACGCCGTTACCTCAACCCCTAATAAA
3972424 TATTTGTGACGCTTACGC
130 TATTTGTGACGCTTACGC
* * * * *
3972442 TAAAAACGCCACTAATAACATATACAAAACGGCACTGTTATAAGATAACGTTAAACATTTTTGCG
1 TAAAAACGCCACTAATAACATAGACAAAACGACACCGTTATAAGATAACATTAAACATTTTTACG
* * *
3972507 GCATATTAGCTAAGCGCCACTAATAAAAATAGGAAACGACGCCGTTTCCTCAACTCGTAATAAAT
66 GCATATTAGCTAAGCGCCACTAATAAAAATAGGAAACGACGCCGTTACCTCAACCCCTAATAAAT
3972572 ATTTG
131 ATTTG
3972577 CGGCGTTTTT
Statistics
Matches: 120, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
147 54 0.45
148 66 0.55
ACGTcount: A:0.39, C:0.22, G:0.14, T:0.25
Consensus pattern (147 bp):
TAAAAACGCCACTAATAACATAGACAAAACGACACCGTTATAAGATAACATTAAACATTTTTACG
GCATATTAGCTAAGCGCCACTAATAAAAATAGGAAACGACGCCGTTACCTCAACCCCTAATAAAT
ATTTGTGACGCTTACGC
Found at i:3972897 original size:20 final size:20
Alignment explanation
Indices: 3972852--3972908 Score: 53
Period size: 20 Copynumber: 2.8 Consensus size: 20
3972842 TCTTCAATTT
3972852 CCAAAC-TAAACCCTAAAACC
1 CCAAACTTAAA-CCTAAAACC
** *
3972872 TTAAACTTAAACCTTAAACC
1 CCAAACTTAAACCTAAAACC
*
3972892 CCAAACTCAAACTCTAA
1 CCAAACTTAAAC-CTAA
3972909 CACATAAACA
Statistics
Matches: 28, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
20 21 0.75
21 7 0.25
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.19
Consensus pattern (20 bp):
CCAAACTTAAACCTAAAACC
Found at i:3972960 original size:7 final size:7
Alignment explanation
Indices: 3972934--3973014 Score: 63
Period size: 7 Copynumber: 11.6 Consensus size: 7
3972924 CCCAAATTAA
*
3972934 TAAACAT
1 TAAACCT
* *
3972941 TATACCA
1 TAAACCT
3972948 TAAACCT
1 TAAACCT
3972955 TAAACCT
1 TAAACCT
*
3972962 TAAACCC
1 TAAACCT
*
3972969 TAAACCG
1 TAAACCT
*
3972976 TAAACAT
1 TAAACCT
*
3972983 TAAATCT
1 TAAACCT
**
3972990 TAAATTT
1 TAAACCT
*
3972997 TAAACCG
1 TAAACCT
*
3973004 TAAAACT
1 TAAACCT
3973011 TAAA
1 TAAA
3973015 ATAAAATGAT
Statistics
Matches: 57, Mismatches: 17, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
7 57 1.00
ACGTcount: A:0.48, C:0.21, G:0.02, T:0.28
Consensus pattern (7 bp):
TAAACCT
Found at i:3972993 original size:21 final size:21
Alignment explanation
Indices: 3972934--3972986 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
3972924 CCCAAATTAA
* *
3972934 TAAACATTATACCATAAACCT
1 TAAACATTAAACCATAAACCG
* *
3972955 TAAACCTTAAACCCTAAACCG
1 TAAACATTAAACCATAAACCG
3972976 TAAACATTAAA
1 TAAACATTAAA
3972987 TCTTAAATTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.49, C:0.25, G:0.02, T:0.25
Consensus pattern (21 bp):
TAAACATTAAACCATAAACCG
Found at i:3973237 original size:8 final size:7
Alignment explanation
Indices: 3973221--3973253 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
3973211 AATCCTAAAT
3973221 CCCT-AC
1 CCCTAAC
*
3973227 CCTTAAC
1 CCCTAAC
3973234 CCCTAAC
1 CCCTAAC
3973241 CCCTAAC
1 CCCTAAC
3973248 CCCTAA
1 CCCTAA
3973254 ACTTTATTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
6 3 0.12
7 21 0.88
ACGTcount: A:0.27, C:0.55, G:0.00, T:0.18
Consensus pattern (7 bp):
CCCTAAC
Found at i:3973260 original size:102 final size:102
Alignment explanation
Indices: 3973131--3973404 Score: 489
Period size: 102 Copynumber: 2.7 Consensus size: 102
3973121 GATAAACCCG
* *
3973131 ACCCCGAATCCCTAA-CCCTAAACTTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAA
1 ACCCCTAACCCCTAACCCCTAAACTTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAA
3973195 CCCTAAATCTTAACCCAATCCTAAATCCCTACCCTTA
66 CCCTAAATCTTAACCCAATCCTAAATCCCTACCCTTA
3973232 ACCCCTAACCCCTAACCCCTAAACTTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAA
1 ACCCCTAACCCCTAACCCCTAAACTTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAA
*
3973297 TCCTAAATCTTAACCCAATCCTAAATCCCTACCCTTA
66 CCCTAAATCTTAACCCAATCCTAAATCCCTACCCTTA
* *
3973334 ACCCCTAACCCCTAACCCCTAAACCTTATTTAATATAT-AATTAAAACACACTAATTAATCTAAA
1 ACCCCTAACCCCTAACCCCTAAACTTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAA
3973398 CCCTAAA
66 CCCTAAA
3973405 CTCTAATCTA
Statistics
Matches: 166, Mismatches: 6, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
101 44 0.27
102 122 0.73
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.28
Consensus pattern (102 bp):
ACCCCTAACCCCTAACCCCTAAACTTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAA
CCCTAAATCTTAACCCAATCCTAAATCCCTACCCTTA
Found at i:3973358 original size:8 final size:7
Alignment explanation
Indices: 3973323--3973355 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
3973313 AATCCTAAAT
3973323 CCCT-AC
1 CCCTAAC
*
3973329 CCTTAAC
1 CCCTAAC
3973336 CCCTAAC
1 CCCTAAC
3973343 CCCTAAC
1 CCCTAAC
3973350 CCCTAA
1 CCCTAA
3973356 ACCTTATTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
6 3 0.12
7 21 0.88
ACGTcount: A:0.27, C:0.55, G:0.00, T:0.18
Consensus pattern (7 bp):
CCCTAAC
Found at i:3973466 original size:7 final size:7
Alignment explanation
Indices: 3973456--3973507 Score: 54
Period size: 7 Copynumber: 7.7 Consensus size: 7
3973446 TCTTAACATT
3973456 TAACCCC
1 TAACCCC
3973463 TAA--CC
1 TAACCCC
*
3973468 TAACCCA
1 TAACCCC
*
3973475 TAATCCC
1 TAACCCC
3973482 TAACCCC
1 TAACCCC
*
3973489 TAACCCT
1 TAACCCC
*
3973496 TAACCCA
1 TAACCCC
3973503 TAACC
1 TAACC
3973508 TTAAATCACA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
5 5 0.14
7 32 0.86
ACGTcount: A:0.35, C:0.46, G:0.00, T:0.19
Consensus pattern (7 bp):
TAACCCC
Found at i:3973483 original size:14 final size:13
Alignment explanation
Indices: 3973456--3973507 Score: 61
Period size: 14 Copynumber: 3.9 Consensus size: 13
3973446 TCTTAACATT
*
3973456 TAACCCCTAA-CC
1 TAACCCATAACCC
3973468 TAACCCATAATCCC
1 TAACCCATAA-CCC
*
3973482 TAACCCCTAACCC
1 TAACCCATAACCC
3973495 TTAACCCATAACC
1 -TAACCCATAACC
3973508 TTAAATCACA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
12 9 0.26
13 3 0.09
14 22 0.65
ACGTcount: A:0.35, C:0.46, G:0.00, T:0.19
Consensus pattern (13 bp):
TAACCCATAACCC
Found at i:3973553 original size:14 final size:15
Alignment explanation
Indices: 3973534--3973566 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
3973524 CTTAAACCAG
3973534 AATCCCTAATT-CAT
1 AATCCCTAATTCCAT
3973548 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
3973563 AATC
1 AATC
3973567 TATAAAACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.36, C:0.30, G:0.00, T:0.33
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:3974073 original size:113 final size:113
Alignment explanation
Indices: 3973811--3974374 Score: 628
Period size: 114 Copynumber: 5.0 Consensus size: 113
3973801 TAAATTATAT
* **
3973811 TAAATCCCTGAGCATTAGCGGCGCATACTTAAAAATGCCACTAAATCCCCGAAAGCTCAGAAAAC
1 TAAAGCCCTGAGCATTAGCGGCGCATACTTAAAAACACCACTAAATCCCCGAAAGCTCAGAAAAC
* *
3973876 GGCGTCGTTGGGCTTTGGTATTTTTGCGGCGCTTTCTCAAAAACGCCGC
66 GACGTCGTTGGGCTTAGGT-TTTTTGCGGCGCTTTCTCAAAAACGCCGC
* * * * *
3973925 TAAATCCTTGAGCATTAGCGGCGCTTGCTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAAC
1 TAAAGCCCTGAGCATTAGCGGCGCATACTTAAAAACACCACTAAATCCCCGAAAGCTCAGAAAAC
* * ** *
3973990 GATGTCGTTGGACTTAGGTTTTTTTTGGCGCTTTCACAAAAACGCCGC
66 GACGTCGTTGGGCTTAGGTTTTTTGCGGCGCTTTCTCAAAAACGCCGC
* * *
3974038 TAAAGTCCTGA-CTATTAGCGGCGCATACTTAAAAACACCACTAATTCCCCGAAAGCTCAGGAAA
1 TAAAGCCCTGAGC-ATTAGCGGCGCATACTTAAAAACACCACTAAATCCCCGAAAGCTCAGAAAA
* * * *
3974102 CGGCGTCGTTAGGCTTAGGTATTTTTGCGGCGC-TTCCCAAAAAAC-AC-C
65 CGACGTCGTTGGGCTTAGGT-TTTTTGCGGCGCTTTCTC-AAAAACGCCGC
*
3974150 --AAGCCCTGAGCATTAGC-G-GC-TACTTAAAAACACCACTGAATCCCCGAAAGCTCAGAAAAC
1 TAAAGCCCTGAGCATTAGCGGCGCATACTTAAAAACACCACTAAATCCCCGAAAGCTCAGAAAAC
* ** ** * * *
3974210 GATGTCGTTGGGCTTAGGTTTTTTTATGGTACTTTTTTAAAAACGCCAC
66 GACGTCGTTGGGCTTAGG-TTTTTTGCGGCGCTTTCTCAAAAACGCCGC
* * * * *
3974259 TAAAGCCCTGAGCATTAGCAGCGCTTTCTTAAAAACACCGCTGAATCCCCGAAAGCTC-GAAAAA
1 TAAAGCCCTGAGCATTAGCGGCGCATACTTAAAAACACCACTAAATCCCCGAAAGCTCAG-AAAA
* * **
3974323 C-AGCATCGTTGGGCTTAGGTATTTTGCGGCGCTTTCTGGAAAACGCCGC
65 CGA-CGTCGTTGGGCTTAGGTTTTTTGCGGCGCTTTCTCAAAAACGCCGC
3974372 TAA
1 TAA
3974375 TGCTTATTTT
Statistics
Matches: 380, Mismatches: 55, Indels: 31
0.82 0.12 0.07
Matches are distributed among these distances:
107 66 0.17
108 6 0.02
109 2 0.01
110 14 0.04
111 18 0.05
112 3 0.01
113 129 0.34
114 142 0.37
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (113 bp):
TAAAGCCCTGAGCATTAGCGGCGCATACTTAAAAACACCACTAAATCCCCGAAAGCTCAGAAAAC
GACGTCGTTGGGCTTAGGTTTTTTGCGGCGCTTTCTCAAAAACGCCGC
Found at i:3976372 original size:46 final size:44
Alignment explanation
Indices: 3976262--3976623 Score: 389
Period size: 46 Copynumber: 8.6 Consensus size: 44
3976252 TACGTATGAT
*
3976262 CACTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCTAGGCTA
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTA
3976304 TCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
1 -CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AAGCTA
3976350 CCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGACTA
1 -CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAG-CTA
*
3976396 CCACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAGGCTAA
1 -CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAA-GCT-A
3976443 CACTTATCACTTTGTCACTTGATCAGATAA--GTA--T-A---A
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTA
*
3976479 CACTTATCACTTTTTCACTTGATCAGATAA--GTA--T-AG---
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTA
*
3976515 CACTTATCACTTTTTCACTTGATCAGATAA--GTA--T-AG---
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTA
* *
3976551 CACTTATCACTTTTTCACTTGATTAGATAAGTGTAGCTAAAGCTA
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AAGCTA
* *
3976596 CCACTTATCACTTTATCTCTTGATCAGA
1 -CACTTATCACTTTGTCACTTGATCAGA
3976624 AGTACTCAAA
Statistics
Matches: 293, Mismatches: 9, Indels: 31
0.88 0.03 0.09
Matches are distributed among these distances:
36 100 0.34
38 3 0.01
40 1 0.00
41 1 0.00
42 3 0.01
43 10 0.03
44 8 0.03
45 24 0.08
46 141 0.48
47 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.36
Consensus pattern (44 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTA
Found at i:3976481 original size:36 final size:36
Alignment explanation
Indices: 3976440--3976582 Score: 250
Period size: 36 Copynumber: 4.0 Consensus size: 36
3976430 TAGCTAAGGC
*
3976440 TAACACTTATCACTTTGTCACTTGATCAGATAAGTA
1 TAACACTTATCACTTTTTCACTTGATCAGATAAGTA
3976476 TAACACTTATCACTTTTTCACTTGATCAGATAAGTA
1 TAACACTTATCACTTTTTCACTTGATCAGATAAGTA
*
3976512 TAGCACTTATCACTTTTTCACTTGATCAGATAAGTA
1 TAACACTTATCACTTTTTCACTTGATCAGATAAGTA
* *
3976548 TAGCACTTATCACTTTTTCACTTGATTAGATAAGT
1 TAACACTTATCACTTTTTCACTTGATCAGATAAGT
3976583 GTAGCTAAAG
Statistics
Matches: 104, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 104 1.00
ACGTcount: A:0.31, C:0.19, G:0.10, T:0.39
Consensus pattern (36 bp):
TAACACTTATCACTTTTTCACTTGATCAGATAAGTA
Found at i:3979914 original size:27 final size:28
Alignment explanation
Indices: 3979861--3979914 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 28
3979851 TTTACTTTTA
** * *
3979861 TTTTTTAAAATTAAATTTGATTGTCATT
1 TTTTTTAAAAAAAAATCTAATTGTCATT
3979889 TTTTTTAAAAAAAAATCTAATT-TCAT
1 TTTTTTAAAAAAAAATCTAATTGTCAT
3979915 CGTCAATATT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
27 4 0.18
28 18 0.82
ACGTcount: A:0.39, C:0.06, G:0.04, T:0.52
Consensus pattern (28 bp):
TTTTTTAAAAAAAAATCTAATTGTCATT
Found at i:3980071 original size:16 final size:17
Alignment explanation
Indices: 3980046--3980078 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
3980036 ATCAAATTTC
3980046 ATTTTCTTGAAT-TTTT
1 ATTTTCTTGAATGTTTT
*
3980062 ATTTTTTTGAATGTTTT
1 ATTTTCTTGAATGTTTT
3980079 TATATATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.18, C:0.03, G:0.09, T:0.70
Consensus pattern (17 bp):
ATTTTCTTGAATGTTTT
Found at i:3990398 original size:20 final size:20
Alignment explanation
Indices: 3990375--3990412 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
3990365 AAAAAGTTAT
*
3990375 AGAAAATAAATAAAAAAGGA
1 AGAAAATAAACAAAAAAGGA
3990395 AGAAAATAAACAAAAAAG
1 AGAAAATAAACAAAAAAG
3990413 AAACGCAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.76, C:0.03, G:0.13, T:0.08
Consensus pattern (20 bp):
AGAAAATAAACAAAAAAGGA
Found at i:3998068 original size:44 final size:44
Alignment explanation
Indices: 3997974--3998061 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
3997964 ATATCTCAAG
*
3997974 GTCCATGTTTATAACATGGCAATTAAGGAAGAATTGACGGAAAA
1 GTCCATGTTTATAACATGGCAATTAAGAAAGAATTGACGGAAAA
3998018 GTCCATGTTTATAACATGGCAATTAAGAAAGAATTGACGGAAAA
1 GTCCATGTTTATAACATGGCAATTAAGAAAGAATTGACGGAAAA
3998062 TACCATGGTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.42, C:0.11, G:0.22, T:0.25
Consensus pattern (44 bp):
GTCCATGTTTATAACATGGCAATTAAGAAAGAATTGACGGAAAA
Found at i:3998080 original size:44 final size:44
Alignment explanation
Indices: 3997974--3998082 Score: 150
Period size: 44 Copynumber: 2.5 Consensus size: 44
3997964 ATATCTCAAG
* *
3997974 GTCCATGTTTATAACATGGCAATTAAGGAAGAATTGACGGAAAA
1 GTCCATGTTGATAACATGGCAATTAAGAAAGAATTGACGGAAAA
*
3998018 GTCCATGTTTATAACATGGCAATTAAGAAAGAATTGACGGAAAA
1 GTCCATGTTGATAACATGGCAATTAAGAAAGAATTGACGGAAAA
*
3998062 -TACCATGGTTGA-ACCATGGCA
1 GT-CCAT-GTTGATAACATGGCA
3998083 GTAAGTGTGC
Statistics
Matches: 60, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
43 1 0.02
44 55 0.92
45 4 0.07
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.25
Consensus pattern (44 bp):
GTCCATGTTGATAACATGGCAATTAAGAAAGAATTGACGGAAAA
Found at i:4001174 original size:179 final size:180
Alignment explanation
Indices: 4000863--4001226 Score: 649
Period size: 179 Copynumber: 2.0 Consensus size: 180
4000853 TAGTCCTTGC
* *
4000863 GTTTGAATTCGGAATGGATCGTAGGTAAGATTATAATGTTTTTTCTTTAGATTTGTAATTTATTT
1 GTTTGAATTCGGAATGGATCGTAGGTAAGATTAGAATGCTTTTTCTTTAGATTTGTAATTTATTT
* * *
4000928 GTGTTTTAGATTACTGATTTCTAGTTAATTGATTTATATATAAATGTGAAATTATTTTGGTTATT
66 GTGTTTTAGATTACTGATTTATAGTTAATTGATATAGATATAAATGTGAAATTATTTTGGTTATT
4000993 TATATAACCATATGAATTGCAATTATTTATGTACACACTTCGCTGCCCCT
131 TATATAACCATATGAATTGCAATTATTTATGTACACACTTCGCTGCCCCT
* *
4001043 GTTTTAATTGGGAATGGATCGTAGGTAAGATTAGAAT-CTTTTTCTTTAGATTTGTAATTTATTT
1 GTTTGAATTCGGAATGGATCGTAGGTAAGATTAGAATGCTTTTTCTTTAGATTTGTAATTTATTT
*
4001107 GTGTTTTAGATTATTGATTTATAGTTAATTGATATAGATATAAATGTGAAATTATTTTGGTTATT
66 GTGTTTTAGATTACTGATTTATAGTTAATTGATATAGATATAAATGTGAAATTATTTTGGTTATT
4001172 TATATAACCATATGAATTGCAATTATTTATGTACACACTTCGCTGCCCCT
131 TATATAACCATATGAATTGCAATTATTTATGTACACACTTCGCTGCCCCT
4001222 GTTTG
1 GTTTG
4001227 CACATCAGTG
Statistics
Matches: 175, Mismatches: 9, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
179 141 0.81
180 34 0.19
ACGTcount: A:0.29, C:0.09, G:0.16, T:0.46
Consensus pattern (180 bp):
GTTTGAATTCGGAATGGATCGTAGGTAAGATTAGAATGCTTTTTCTTTAGATTTGTAATTTATTT
GTGTTTTAGATTACTGATTTATAGTTAATTGATATAGATATAAATGTGAAATTATTTTGGTTATT
TATATAACCATATGAATTGCAATTATTTATGTACACACTTCGCTGCCCCT
Found at i:4002502 original size:18 final size:18
Alignment explanation
Indices: 4002475--4002513 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
4002465 ATAAATTAAA
*
4002475 ATATGTATA-TATATAAGT
1 ATATGAATATTATA-AAGT
4002493 ATATGAATATTATAAAGT
1 ATATGAATATTATAAAGT
4002511 ATA
1 ATA
4002514 AAAAAAACGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (18 bp):
ATATGAATATTATAAAGT
Found at i:4002680 original size:3 final size:3
Alignment explanation
Indices: 4002672--4002730 Score: 77
Period size: 3 Copynumber: 20.0 Consensus size: 3
4002662 TAGTAATGAC
*
4002672 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT GAA- AAT GAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT
*
4002717 AAT ATT AA- AAT AAT
1 AAT AAT AAT AAT AAT
4002731 GAACAAAATA
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
2 4 0.08
3 43 0.88
4 2 0.04
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:4004376 original size:128 final size:128
Alignment explanation
Indices: 4004163--4006665 Score: 4080
Period size: 128 Copynumber: 19.6 Consensus size: 128
4004153 TTAATCCGAC
*
4004163 CTACTGCAACTTCAGAG-GCATAAGATCTGTGGTTTTAATCCACTCCACTGCAACTTCAGGGAGA
1 CTACTGCAACTTCAGAGAG-ATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGA
* * * * *
4004227 TAGGATTGATTTC-TTCTGTCTGTTCCACTATTGCTTAGGTAGATAAGACTTGATGCGATTTGCT
65 TAGGATTGATTTCTTTC-GTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCT
* * *
4004291 CTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCACTCCACTGCAACATCCGGGAGAT
1 CTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGAT
* *
4004356 AGGATTAATTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATTTGCT
66 AGGATTGATTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCT
* *
4004419 CTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTAATCCGCTCCATTGCAACTTCAGGGAGAT
1 CTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGAT
*
4004484 AGGATTGATTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGTGATCTGCT
66 AGGATTGATTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCT
*
4004547 CTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATTCGCTCCACTGCAACTTCAGGGAGAT
1 CTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGAT
* *
4004612 AGGATTGATTTCTTTCGTCTGCTCTACTACTGCTTAGGGAGATAAGATTGGATGCGATCTGCT
66 AGGATTGATTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCT
*
4004675 CTACTGCAACTTCAGAGAGATAAGATATGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGAT
1 CTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGAT
* * * *
4004740 AGGATTGATTTCTTTCGTTTACTCCACTACTGCTTAAGGAGATAAGACTGGATACGATCTGCT
66 AGGATTGATTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCT
* * * *
4004803 CTACTGCAACTTCAGAGAGATAAGATCTATGGCTTTAATCCGCTCCACTGTAACTTCAAGGAGAT
1 CTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGAT
* * * * *
4004868 AGGATTGGTCTC-TTCTGTCTGCTCCACTACTACTTAGGGAGATAAGACTTGATGTGATCTGCT
66 AGGATTGATTTCTTTC-GTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCT
* *
4004931 CTACTGTAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTACAACTTCAGGGAGAT
1 CTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGAT
4004996 AGGATTGATTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCT
66 AGGATTGATTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCT
* * *
4005059 CTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCACTCCACTACAACTTTAGGGAGAT
1 CTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGAT
*
4005124 AGGATTGATTTCTTTCGTCTGTTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCT
66 AGGATTGATTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCT
* *
4005187 CTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTAATCCGCTCCATTGCAACTTCAGGGAGAT
1 CTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGAT
* *
4005252 GGGATTGATTTCTTTCGTCTGCTTCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCT
66 AGGATTGATTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCT
* *
4005315 CTACTGCAACTTCAGAGAGATAAGATATGTGGTTTTAATCCGTTCCACTGCAACTTCAGGGAGAT
1 CTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGAT
* *
4005380 AGGATTGATTTCTTTCGTCTACTCTACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCT
66 AGGATTGATTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCT
* * * * *
4005443 CTACTGTAACTTCAAAGAGATAAGATATGTGGTTTTAATCCGTTCCACTGCAACTTCAGGAAGAT
1 CTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGAT
* *
4005508 AGGATTGATTTCTTTCGTTTACTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCT
66 AGGATTGATTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCT
* * * *
4005571 CTACTGCAACTTCAGAGAGATAAGATCTATGGCTTTAATCCGCTCTACTGCAACTTTAGGGAGAT
1 CTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGAT
* * * * * * **
4005636 AGGATTGGTCTC-TTCTGTCTACTCCACTACTACTTAGGGAGATAAAACTTGATATGATCTGCT
66 AGGATTGATTTCTTTC-GTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCT
*
4005699 CTACTACAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGAT
1 CTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGAT
* * *
4005764 AGGATTAATTT-TTTCGTCTGCTCCAATACTGCTTAGAGAGATAAGACTGGATGCGATCTGCT
66 AGGATTGATTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCT
* * *
4005826 CTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCACTCCACTGCAACATCCGGGAGAT
1 CTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGAT
* *
4005891 AGGATTAATTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATTTGCT
66 AGGATTGATTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCT
* *
4005954 CTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTAATCCGCTCCATTGCAACTTCAGGGAGAT
1 CTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGAT
*
4006019 AGGATTGATTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGTGATCTGCT
66 AGGATTGATTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCT
*
4006082 CTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATTCGCTCCACTGCAACTTCAGGGAGAT
1 CTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGAT
* * *
4006147 AGGATTGATTTCTTTCGTCTGCTCTATTACTGCTTAGGGAGATAAGATTGGATGCGATCTGCT
66 AGGATTGATTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCT
*
4006210 CTACTGCAACTTCAGAGAGATAAGATATGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGAT
1 CTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGAT
* * * *
4006275 AGGATTGATTTCTTTCGTTTACTCCACTACTGCTTAAGGAGATAAGACTGGATACGATCTGCT
66 AGGATTGATTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCT
* *
4006338 CTACTGCAACTTCAGAGAGATAAGATCTATGGCTTTAATCCGCTCCACTGCAACTTCAGGGAGAT
1 CTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGAT
* *
4006403 AGGATTGATTTCTTTCGTTTACTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCT
66 AGGATTGATTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCT
* *
4006466 CTACTGCAACTTCAAAGAGATAAGATCTATGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGAT
1 CTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGAT
*
4006531 AGGATTGATTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTAGATGCGATCTGCT
66 AGGATTGATTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCT
* * *
4006594 CTACTGCAACTTCAGAGAGATAAGATCTGTAGTTGTAATCCGCTCCACTGCAACTTCAAGGAGAT
1 CTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGAT
4006659 AGGATTG
66 AGGATTG
4006666 GTTTTTCTGT
Statistics
Matches: 2210, Mismatches: 158, Indels: 14
0.93 0.07 0.01
Matches are distributed among these distances:
127 117 0.05
128 2086 0.94
129 7 0.00
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.32
Consensus pattern (128 bp):
CTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGAT
AGGATTGATTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCT
Found at i:4004464 original size:84 final size:85
Alignment explanation
Indices: 4004376--4006531 Score: 316
Period size: 84 Copynumber: 25.3 Consensus size: 85
4004366 TCTTTCGTCT
** *
4004376 GCTCCACTACTGCTT-AGGGAGATAAGACTGGATGCGATTTGCTCTACTGCAACTTCAGAGAGAT
1 GCTCCACTACAACTTCAGGGAGATAAGACTGGATGCGATTTGCTCCACTGCAACTTCAGAGAGAT
4004440 AAGATCTATGGTTTTAATCC
66 AAGATCTATGGTTTTAATCC
* * * * * ** * ** *
4004460 GCTCCATTGCAACTTCAGGGAGATAGGA-TTGATTTCTTTCGTCTGCTCCACTACTGCTT-AGGG
1 GCTCCACTACAACTTCAGGGAGATAAGACTGGA-TGCGAT--T-TGCTCCACTGCAACTTCAGAG
* * * *
4004523 AGATAAGA-C--TGGATGTGATCT
62 AGATAAGATCTATGGTTTTAATCC
* * * * *** * *
4004544 GCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATTCGCTCCACTGCAACTTCAGGGA
1 GCTCCACTACAACTTCAGGGAGATAAGA-C--TGGATGCGATTTGCTCCACTGCAACTTCAGAGA
* * ** *
4004609 GATAGGAT-TGAT-TTCTTTCGTCT
63 GATAAGATCT-ATGGT-TTTAATCC
* ** * * *
4004632 GCTCTACTACTGCTT-AGGGAGATAAGATTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGAT
1 GCTCCACTACAACTTCAGGGAGATAAGACTGGATGCGATTTGCTCCACTGCAACTTCAGAGAGAT
* *
4004696 AAGATATGTGGTTTTAATCC
66 AAGATCTATGGTTTTAATCC
* * * * * * ** *
4004716 GCTCCACTGCAACTTCAGGGAGATAGGA-TTGATTTCTTTCG-TTTACTCCACTACTGCTTAAG-
1 GCTCCACTACAACTTCAGGGAGATAAGACTGGA-----TGCGATTTGCTCCACTGCAACTTCAGA
* *** *
4004778 GAGATAAGA-C--TGGATACGATCT
61 GAGATAAGATCTATGGTTTTAATCC
* * * * *** ** *
4004800 GCTCTACTGCAACTTCAGAGAGATAAGATCTATGGCTTTAATCCGCTCCACTGTAACTTCA-AGG
1 GCTCCACTACAACTTCAGGGAGATAAGA-C--TGGATGCGATTTGCTCCACTGCAACTTCAGA-G
* ** *
4004864 AGATAGGA--T-TGGTCTCTTCTGTCT
62 AGATAAGATCTATGGT-T-TT-AATCC
* * * * * *
4004888 GCTCCACTACTACTT-AGGGAGATAAGACTTGATGTGATCTGCTCTACTGTAACTTCAGAGAGAT
1 GCTCCACTACAACTTCAGGGAGATAAGACTGGATGCGATTTGCTCCACTGCAACTTCAGAGAGAT
*
4004952 AAGATCTGTGGTTTTAATCC
66 AAGATCTATGGTTTTAATCC
* * * ** * ** *
4004972 GCTCCACTACAACTTCAGGGAGATAGGA-TTGATTTCTTTCGTCTGCTCCACTACTGCTT-AGGG
1 GCTCCACTACAACTTCAGGGAGATAAGACTGGA-TGCGAT--T-TGCTCCACTGCAACTTCAGAG
* *** *
4005035 AGATAAGA-C--TGGATGCGATCT
62 AGATAAGATCTATGGTTTTAATCC
* * * * *** *** * * *
4005056 GCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCACTCCACTACAACTTTAGGGA
1 GCTCCACTACAACTTCAGGGAGATAAGA-C--TGGATGCGATTTGCTCCACTGCAACTTCAGAGA
* * ** *
4005121 GATAGGAT-TGAT-TTCTTTCGTCT
63 GATAAGATCT-ATGGT-TTTAATCC
* ** * *
4005144 GTTCCACTACTGCTT-AGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGAT
1 GCTCCACTACAACTTCAGGGAGATAAGACTGGATGCGATTTGCTCCACTGCAACTTCAGAGAGAT
4005208 AAGATCTATGGTTTTAATCC
66 AAGATCTATGGTTTTAATCC
* * ** * * ** * * ** *
4005228 GCTCCATTGCAACTTCAGGGAGATGGGA-TTGATTTCTTTCGTCTGCTTCACTACTGCTT-AGGG
1 GCTCCACTACAACTTCAGGGAGATAAGACTGGA-TGCGAT--T-TGCTCCACTGCAACTTCAGAG
* *** *
4005291 AGATAAGA-C--TGGATGCGATCT
62 AGATAAGATCTATGGTTTTAATCC
* * * * * *** ** * *
4005312 GCTCTACTGCAACTTCAGAGAGATAAGATATGTGGTTTTAATCCGTTCCACTGCAACTTCAGGGA
1 GCTCCACTACAACTTCAGGGAGATAAG--A-CTGGATGCGATTTGCTCCACTGCAACTTCAGAGA
* * ** *
4005377 GATAGGAT-TGAT-TTCTTTCGTCT
63 GATAAGATCT-ATGGT-TTTAATCC
* * ** * * * *
4005400 ACTCTACTACTGCTT-AGGGAGATAAGACTGGATGCGATCTGCTCTACTGTAACTTCAAAGAGAT
1 GCTCCACTACAACTTCAGGGAGATAAGACTGGATGCGATTTGCTCCACTGCAACTTCAGAGAGAT
* *
4005464 AAGATATGTGGTTTTAATCC
66 AAGATCTATGGTTTTAATCC
* * * * * * * * ** *
4005484 GTTCCACTGCAACTTCAGGAAGATAGGA-TTGATTTCTTTCG-TTTACTCCACTACTGCTT-AGG
1 GCTCCACTACAACTTCAGGGAGATAAGACTGGA-----TGCGATTTGCTCCACTGCAACTTCAGA
* *** *
4005546 GAGATAAGA-C--TGGATGCGATCT
61 GAGATAAGATCTATGGTTTTAATCC
* * * * *** ** * * *
4005568 GCTCTACTGCAACTTCAGAGAGATAAGATCTATGGCTTTAATCCGCTCTACTGCAACTTTAGGGA
1 GCTCCACTACAACTTCAGGGAGATAAGA-C--TGGATGCGATTTGCTCCACTGCAACTTCAGAGA
* ** *
4005633 GATAGGA--T-TGGTCTCTTCTGTCT
63 GATAAGATCTATGGT-T-TT-AATCC
* * * * ** * * *
4005656 ACTCCACTACTACTT-AGGGAGATAAAACTTGATATGATCTGCTCTACTACAACTTCAGAGAGAT
1 GCTCCACTACAACTTCAGGGAGATAAGACTGGATGCGATTTGCTCCACTGCAACTTCAGAGAGAT
*
4005720 AAGATCTGTGGTTTTAATCC
66 AAGATCTATGGTTTTAATCC
* * ** * * * * **
4005740 GCTCCACTGCAACTTCAGGGAGATAGGA-TTAATTTTTTCG-TCTGCTCCAATACTGCTT-AGAG
1 GCTCCACTACAACTTCAGGGAGATAAGACTGGA----TGCGATTTGCTCCACTGCAACTTCAGAG
* *** *
4005802 AGATAAGA-C--TGGATGCGATCT
62 AGATAAGATCTATGGTTTTAATCC
* * * * *** *** * * *
4005823 GCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCACTCCACTGCAACATCCGGGA
1 GCTCCACTACAACTTCAGGGAGATAAGA-C--TGGATGCGATTTGCTCCACTGCAACTTCAGAGA
* * ** *
4005888 GATAGGAT-TAAT-TTCTTTCGTCT
63 GATAAGATCT-ATGGT-TTTAATCC
** *
4005911 GCTCCACTACTGCTT-AGGGAGATAAGACTGGATGCGATTTGCTCTACTGCAACTTCAGAGAGAT
1 GCTCCACTACAACTTCAGGGAGATAAGACTGGATGCGATTTGCTCCACTGCAACTTCAGAGAGAT
4005975 AAGATCTATGGTTTTAATCC
66 AAGATCTATGGTTTTAATCC
* * * * * ** * ** *
4005995 GCTCCATTGCAACTTCAGGGAGATAGGA-TTGATTTCTTTCGTCTGCTCCACTACTGCTT-AGGG
1 GCTCCACTACAACTTCAGGGAGATAAGACTGGA-TGCGAT--T-TGCTCCACTGCAACTTCAGAG
* * * *
4006058 AGATAAGA-C--TGGATGTGATCT
62 AGATAAGATCTATGGTTTTAATCC
* * * * *** * *
4006079 GCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATTCGCTCCACTGCAACTTCAGGGA
1 GCTCCACTACAACTTCAGGGAGATAAGA-C--TGGATGCGATTTGCTCCACTGCAACTTCAGAGA
* * ** *
4006144 GATAGGAT-TGAT-TTCTTTCGTCT
63 GATAAGATCT-ATGGT-TTTAATCC
* * ** * * *
4006167 GCTCTATTACTGCTT-AGGGAGATAAGATTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGAT
1 GCTCCACTACAACTTCAGGGAGATAAGACTGGATGCGATTTGCTCCACTGCAACTTCAGAGAGAT
* *
4006231 AAGATATGTGGTTTTAATCC
66 AAGATCTATGGTTTTAATCC
* * * * * * ** *
4006251 GCTCCACTGCAACTTCAGGGAGATAGGA-TTGATTTCTTTCG-TTTACTCCACTACTGCTTAAG-
1 GCTCCACTACAACTTCAGGGAGATAAGACTGGA-----TGCGATTTGCTCCACTGCAACTTCAGA
* *** *
4006313 GAGATAAGA-C--TGGATACGATCT
61 GAGATAAGATCTATGGTTTTAATCC
* * * * *** ** *
4006335 GCTCTACTGCAACTTCAGAGAGATAAGATCTATGGCTTTAATCCGCTCCACTGCAACTTCAGGGA
1 GCTCCACTACAACTTCAGGGAGATAAGA-C--TGGATGCGATTTGCTCCACTGCAACTTCAGAGA
* * ** **
4006400 GATAGGAT-TGAT-TTCTTTCGTTT
63 GATAAGATCT-ATGGT-TTTAATCC
* ** * * *
4006423 ACTCCACTACTGCTT-AGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAAAGAGAT
1 GCTCCACTACAACTTCAGGGAGATAAGACTGGATGCGATTTGCTCCACTGCAACTTCAGAGAGAT
4006487 AAGATCTATGGTTTTAATCC
66 AAGATCTATGGTTTTAATCC
*
4006507 GCTCCACTGCAACTTCAGGGAGATA
1 GCTCCACTACAACTTCAGGGAGATA
4006532 GGATTGATTT
Statistics
Matches: 1435, Mismatches: 491, Indels: 291
0.65 0.22 0.13
Matches are distributed among these distances:
83 40 0.03
84 725 0.51
85 212 0.15
86 28 0.02
87 195 0.14
88 226 0.16
89 9 0.01
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.32
Consensus pattern (85 bp):
GCTCCACTACAACTTCAGGGAGATAAGACTGGATGCGATTTGCTCCACTGCAACTTCAGAGAGAT
AAGATCTATGGTTTTAATCC
Found at i:4006986 original size:99 final size:100
Alignment explanation
Indices: 4006685--4007783 Score: 1041
Period size: 99 Copynumber: 11.1 Consensus size: 100
4006675 TCTAATTAAC
* * * ** * * * * * * *
4006685 TGCAATGTCGGGGAAGCAAGATTCACTGTTACAGCTTCAATCTATCCCATTGCACCTCCAGGGAA
1 TGCAATGTCGGGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCATCGCTAAGGAA
*
4006750 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTAAAT
66 GTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAAT
* * *** * *
4006785 TGCAATGTCAGGGAAACAAGATTCGTCGTTACGGCTTCAATCTG-TCCTATTGCATCGCCAAGGA
1 TGCAATGTCGGGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCC-ACTGCATCGCTAAGGA
* *
4006849 AGTAAGATTCGCCGTTGCGACTTCAATCTTTTAAAT
65 AGTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAAT
**
4006885 TGTGATGTCGGGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCA-CGCTAAGGAA
1 TGCAATGTCGGGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCATCGCTAAGGAA
* **
4006949 GTAAGATTTGCCGTTGCAGCTTCAATCTTTTAAAT
66 GTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAAT
** * * * * *
4006984 TGTGATGTCGGGG-AACAAGATTCACCGTTGTAGCTTCAATCTGATCCACTACATCACCAAGGAA
1 TGCAATGTCGGGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCATCGCTAAGGAA
*
4007048 GTAAGATTCGCTGTTGTGGCTTCAATCTTTTAAAT
66 GTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAAT
* * ** * * * * * *
4007083 TGTAATATCAAGGAAACAAGATTCGCCGTCGTAGCTTTAATCTGCTCAACTGTA-CTGC-CAGAG
1 TGCAATGTCGGGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCATC-GCTAAG-G
* * ** *
4007146 AAGTGATATTTACCGTTGTAGTG-TT-AATCTTTTTAAT
64 AAGTAAGATTCGCCGTTGT-G-GCTTCAATCTTTTAAAT
** * * *
4007183 TGCAATACCGGGG-AACAAGATTCACTGTTGTAGCTTCAATCTGATCCACTGCATCGCCT-AGGA
1 TGCAATGTCGGGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCATCG-CTAAGGA
*
4007246 AGTAAGATTCGTCGTT-TGGCTTCAATCTTTTAAAT
65 AGTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAAT
* * * * *
4007281 TGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTTAATCTGCTCCACTGCACTAC-C-AGGG
1 TGCAATGTCGGGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCA-T-CGCTAAGG
* *
4007344 AAGTAAGATTCGTCGTTGCGGCTTCAATCTTTTAAAT
64 AAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAAT
* * *
4007381 TGCAATGTCGAGGAAACAAGATTCGTCGTTGTAGCTTCAATCGGTTCCACTGCA-CTGCCT--GG
1 TGCAATGTCGGGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCATC-G-CTAAGG
* ** *
4007443 GAGTAAGATTCATCGTTGTGGCTTCAATATTTT-AAT
64 AAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAAT
** * * * * *
4007479 TGCAATGTTAGGGAAACAAGATTTGTCATTGTAGCTTCAATCTGTTCCACTGCACCGCTAAGGGA
1 TGCAATGTCGGGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCATCGCTAAGGAA
* * *
4007544 GTAAGATTCGCTGTTGTAGCTCCAATCTTTT-AAT
66 GTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAAT
** * * *
4007578 TGCAATGTTAGGGAAACAAGATTTGTCGTTGTAGCTTCAATCTGTTCCACTGCACCGCTAAAGG-
1 TGCAATGTCGGGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCATCGCT-AAGGA
* *
4007642 TGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTAAT
65 AGTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAAT
* * * * ** * *
4007678 TGCAATATCGGGGGAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCTGCTGCACCACCT--GGT
1 TGCAATGTCGGGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCATC-GCTAAGG-
* * * * *
4007741 AAGTAAGATTTGCTGTTGTGGCCTCAGTCTTTTTAAT
64 AAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAAT
4007778 TGCAAT
1 TGCAAT
4007784 CTATGGTTTC
Statistics
Matches: 848, Mismatches: 121, Indels: 60
0.82 0.12 0.06
Matches are distributed among these distances:
96 1 0.00
97 6 0.01
98 114 0.13
99 360 0.42
100 357 0.42
101 9 0.01
102 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (100 bp):
TGCAATGTCGGGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCATCGCTAAGGAA
GTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAAT
Found at i:4007345 original size:50 final size:50
Alignment explanation
Indices: 4006695--4007724 Score: 285
Period size: 50 Copynumber: 20.7 Consensus size: 50
4006685 TGCAATGTCG
* ** * * * * *
4006695 GGGAAGCAAGATTCACTGTTACAGCTTCAATCTATCCCATTGCACCT-CCA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCAACTGCA-ATACCA
* * ** * * * **
4006745 GGGAAGTAAGATTCGCCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCAACTGCAATACCA
* ** *** * * * *
4006795 GGGAAACAAGATTCGTCGTTACGGCTTCAATCTGTCCTATTGC-ATCGCCA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCAACTGCAAT-ACCA
* * * * * * * ** ** *
4006845 AGGAAGTAAGATTCGCCGTTG-CGACTTCAATCTTTTAAATTGTGATGTCG
1 GGGAAGCAAGATTCACCGTTGTAG-CTTCAATCTGTTCAACTGCAATACCA
* * * ** *
4006895 GGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGC-ACGCTA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCAACTGCAATACCA
* * ** * * * * ** ** *
4006944 AGGAAGTAAGATTTGCCGTTGCAGCTTCAATCTTTTAAATTGTGATGTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCAACTGCAATACCA
* * *
4006994 GGGAA-CAAGATTCACCGTTGTAGCTTCAATCTGATCCACTAC-ATCACCA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCAACTGCAAT-ACCA
* * * * * * * * * *
4007043 AGGAAGTAAGATTCGCTGTTGTGGCTTCAATCTTTTAAATTGTAATATCA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCAACTGCAATACCA
* * * * * * * * *
4007093 AGGAAACAAGATTCGCCGTCGTAGCTTTAATCTGCTCAACTGTACTGCCA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCAACTGCAATACCA
* ** * * * * * * *
4007143 GAGAAGTGATATTTACCGTTGTAG-TGTTAATCTTTTTAATTGCAATACCG
1 GGGAAGCAAGATTCACCGTTGTAGCT-TCAATCTGTTCAACTGCAATACCA
* * * *
4007193 GGGAA-CAAGATTCACTGTTGTAGCTTCAATCTGATCCACTGC-ATCGCCTA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCAACTGCAAT-ACC-A
* ** * * * * ** *
4007243 -GGAAGTAAGATTCGTCGTT-TGGCTTCAATCTTTTAAATTGCAATGTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCAACTGCAATACCA
* * * *
4007291 GGGAAGCAAGATTCACCGTTGTAGCTTTAATCTGCTCCACTGCACTACCA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCAACTGCAATACCA
* ** ** * * * **
4007341 GGGAAGTAAGATTCGTCGTTGCGGCTTCAATCTTTTAAATTGCAATGTC-
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCAACTGCAATACCA
* ** * * * * *
4007390 GAGGAAACAAGATTCGTCGTTGTAGCTTCAATCGGTTCCACTGCACTGCCT
1 G-GGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCAACTGCAATACCA
* * * * * * ***
4007441 GGG-AGTAAGATTCATCGTTGTGGCTTCAATAT-TTTAATTGCAATGTTA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCAACTGCAATACCA
* *** * * *** *
4007489 GGGAAACAAGATTTGTCATTGTAGCTTCAATCTGTTCCACTGCACCGCTAA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCAACTGCAATAC-CA
* * * * * * ***
4007540 GGG-AGTAAGATTCGCTGTTGTAGCTCCAATCT-TTTAATTGCAATGTTA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCAACTGCAATACCA
* *** * *** *
4007588 GGGAAACAAGATTTGTCGTTGTAGCTTCAATCTGTTCCACTGCACCGCTAA
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCAACTGCAATAC-CA
* * * * * * * * * *
4007639 AGG-TGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTAATTGCAATATCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCAACTGCAATACCA
*
4007688 GGGGAGCAAGATTCACCGTTGTAGCTTCAATCTGTTC
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTC
4007725 TGCTGCACCA
Statistics
Matches: 693, Mismatches: 261, Indels: 52
0.69 0.26 0.05
Matches are distributed among these distances:
48 20 0.03
49 214 0.31
50 446 0.64
51 13 0.02
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (50 bp):
GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCAACTGCAATACCA
Found at i:4007747 original size:100 final size:99
Alignment explanation
Indices: 4006685--4007783 Score: 1050
Period size: 100 Copynumber: 11.1 Consensus size: 99
4006675 TCTAATTAAC
* * * ** * * * *
4006685 TGCAATGTCGGGGAAGCAAGATTCACTGTTACAGCTTCAATCTATCCCATTGCACCTCCAGGGAA
1 TGCAATGTCGGGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCACCA-GGAA
*
4006750 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTAAAT
65 GTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAAT
* * *** * * *
4006785 TGCAATGTCAGGGAAACAAGATTCGTCGTTACGGCTTCAATCTG-TCCTATTGCATCGCCAAGGA
1 TGCAATGTCGGGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCC-ACTGCACCACC-AGGA
* *
4006849 AGTAAGATTCGCCGTTGCGACTTCAATCTTTTAAAT
64 AGTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAAT
**
4006885 TGTGATGTCGGGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACGCTA--AGGA
1 TGCAATGTCGGGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAC-C-ACCAGGA
* **
4006948 AGTAAGATTTGCCGTTGCAGCTTCAATCTTTTAAAT
64 AGTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAAT
** * * * *
4006984 TGTGATGTCGGGG-AACAAGATTCACCGTTGTAGCTTCAATCTGATCCACTACATCACCAAGGAA
1 TGCAATGTCGGGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCACC-AGGAA
*
4007048 GTAAGATTCGCTGTTGTGGCTTCAATCTTTTAAAT
65 GTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAAT
* * ** * * * * * **
4007083 TGTAATATCAAGGAAACAAGATTCGCCGTCGTAGCTTTAATCTGCTCAACTGTACTGCCAGAGAA
1 TGCAATGTCGGGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCACCAG-GAA
* * ** *
4007148 GTGATATTTACCGTTGTAGTG-TT-AATCTTTTTAAT
65 GTAAGATTCGCCGTTGT-G-GCTTCAATCTTTTAAAT
** * * * * *
4007183 TGCAATACCGGGG-AACAAGATTCACTGTTGTAGCTTCAATCTGATCCACTGCATCGCCTAGGAA
1 TGCAATGTCGGGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCACC-AGGAA
*
4007247 GTAAGATTCGTCGTT-TGGCTTCAATCTTTTAAAT
65 GTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAAT
* * * * *
4007281 TGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTTAATCTGCTCCACTGCACTACCAGGGAA
1 TGCAATGTCGGGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCACCA-GGAA
* *
4007346 GTAAGATTCGTCGTTGCGGCTTCAATCTTTTAAAT
65 GTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAAT
* * * ** * *
4007381 TGCAATGTCGAGGAAACAAGATTCGTCGTTGTAGCTTCAATCGGTTCCACTGCACTGCCTGGGAG
1 TGCAATGTCGGGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCACCAGGAAG
** *
4007446 TAAGATTCATCGTTGTGGCTTCAATATTTT-AAT
66 TAAGATTCGCCGTTGTGGCTTCAATCTTTTAAAT
** * * * * * *
4007479 TGCAATGTTAGGGAAACAAGATTTGTCATTGTAGCTTCAATCTGTTCCACTGCACCGCTAAGGGA
1 TGCAATGTCGGGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCAC-CAGGAA
* * *
4007544 GTAAGATTCGCTGTTGTAGCTCCAATCTTTT-AAT
65 GTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAAT
** * * * *
4007578 TGCAATGTTAGGGAAACAAGATTTGTCGTTGTAGCTTCAATCTGTTCCACTGCACCGCTAAAGG-
1 TGCAATGTCGGGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCAC--CAGGA
* *
4007642 TGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTAAT
64 AGTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAAT
* * * * ** *
4007678 TGCAATATCGGGGGAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCTGCTGCACCACCTGGTAA
1 TGCAATGTCGGGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCACCAGG-AA
* * * * *
4007743 GTAAGATTTGCTGTTGTGGCCTCAGTCTTTTTAAT
65 GTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAAT
4007778 TGCAAT
1 TGCAAT
4007784 CTATGGTTTC
Statistics
Matches: 843, Mismatches: 133, Indels: 46
0.82 0.13 0.05
Matches are distributed among these distances:
96 2 0.00
97 4 0.00
98 117 0.14
99 353 0.42
100 358 0.42
101 8 0.01
102 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (99 bp):
TGCAATGTCGGGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCACCAGGAAG
TAAGATTCGCCGTTGTGGCTTCAATCTTTTAAAT
Done.