Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53248092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1300000 characters in sequence are not A, C, G, or T
File 142 of 175
Found at i:43645070 original size:43 final size:43
Alignment explanation
Indices: 43644909--43645130 Score: 227
Period size: 43 Copynumber: 5.2 Consensus size: 43
43644899 TTCTTTAGCG
* *
43644909 GCGGTGTTTGTGGGAGAAGCGCCGCTAAAAGTCATGATCTATA
1 GCGGCGTTTGTGGGAGAAGCGCCGCTAAAAGTCATGACCTATA
* * * * *
43644952 GTGACGTTTATGGG-GTAAGCGTCGCTAAAAGTCATGATCTATA
1 GCGGCGTTTGTGGGAG-AAGCGCCGCTAAAAGTCATGACCTATA
** *
43644995 GCGGCGCTTT-T-ATACAAGCGCC-CTAAAAGTCATGACCTATA
1 GCGGCG-TTTGTGGGAGAAGCGCCGCTAAAAGTCATGACCTATA
* *
43645036 GCGGTGTTTGTGGGAGAAGCGCCGCTAAAAGTCATAACCTATA
1 GCGGCGTTTGTGGGAGAAGCGCCGCTAAAAGTCATGACCTATA
* * * * * * *
43645079 GCGGCGTTTGTCGGAGAAGCGTCGCTAAAGGTTATTACTTTTA
1 GCGGCGTTTGTGGGAGAAGCGCCGCTAAAAGTCATGACCTATA
43645122 GCGGCGTTT
1 GCGGCGTTT
43645131 ATTTCTAAAA
Statistics
Matches: 148, Mismatches: 25, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
40 3 0.02
41 24 0.16
42 15 0.10
43 103 0.70
44 3 0.02
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (43 bp):
GCGGCGTTTGTGGGAGAAGCGCCGCTAAAAGTCATGACCTATA
Found at i:43645334 original size:49 final size:49
Alignment explanation
Indices: 43645262--43645585 Score: 422
Period size: 49 Copynumber: 6.6 Consensus size: 49
43645252 TCGTGTAGTG
*
43645262 ATACATGCATAACAGTACATAACATACATAACATAACAATAAACGTAAC
1 ATACATACATAACAGTACATAACATACATAACATAACAATAAACGTAAC
*
43645311 ATACATGCATAACAGTACATAACATACATAACAT-ACAATAAACGTAAC
1 ATACATACATAACAGTACATAACATACATAACATAACAATAAACGTAAC
* *
43645359 ATACAAACAAAACAGTACATAACATACATAACATAACAATAAACGTAAC
1 ATACATACATAACAGTACATAACATACATAACATAACAATAAACGTAAC
* * * *
43645408 ATACAAACATAACAGTTCATAACATACATAACATAATAGTAAACGTAAC
1 ATACATACATAACAGTACATAACATACATAACATAACAATAAACGTAAC
* * *
43645457 ATACATGCATAACAGTACATAACATACATAACATAACAGTAAAAGTAAC
1 ATACATACATAACAGTACATAACATACATAACATAACAATAAACGTAAC
* * * ** * *
43645506 ATACGTACATAATAGTACATTACATACATAACAGT-TTAA-AAACATAGC
1 ATACATACATAACAGTACATAACATACATAACA-TAACAATAAACGTAAC
43645554 ATACATACATAAACAGTA-ATTAAACATACATA
1 ATACATACAT-AACAGTACA-T-AACATACATA
43645586 GCAAACATAC
Statistics
Matches: 245, Mismatches: 25, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
48 61 0.25
49 174 0.71
50 10 0.04
ACGTcount: A:0.53, C:0.19, G:0.06, T:0.22
Consensus pattern (49 bp):
ATACATACATAACAGTACATAACATACATAACATAACAATAAACGTAAC
Found at i:43645474 original size:146 final size:147
Alignment explanation
Indices: 43645269--43645538 Score: 443
Period size: 146 Copynumber: 1.8 Consensus size: 147
43645259 GTGATACATG
43645269 CATAACAGTACATAACATACATAACATAACAATAAACGTAACATACATGCATAACAGTACATAAC
1 CATAACAGTACATAACATACATAACATAACAATAAACGTAACATACATGCATAACAGTACATAAC
*
43645334 ATACATAACAT-ACAATAAACGTAACATACAAACAAAACAGTACATAACATACATAACATAACAA
66 ATACATAACATAACAATAAAAGTAACATACAAACAAAACAGTACATAACATACATAACATAACAA
43645398 TAAACGTAACATACAAA
131 TAAACGTAACATACAAA
* * *
43645415 CATAACAGTTCATAACATACATAACATAATAGTAAACGTAACATACATGCATAACAGTACATAAC
1 CATAACAGTACATAACATACATAACATAACAATAAACGTAACATACATGCATAACAGTACATAAC
* ** * * *
43645480 ATACATAACATAACAGTAAAAGTAACATACGTACATAATAGTACATTACATACATAACA
66 ATACATAACATAACAATAAAAGTAACATACAAACAAAACAGTACATAACATACATAACA
43645539 GTTTAAAAAC
Statistics
Matches: 113, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
146 73 0.65
147 40 0.35
ACGTcount: A:0.54, C:0.20, G:0.06, T:0.21
Consensus pattern (147 bp):
CATAACAGTACATAACATACATAACATAACAATAAACGTAACATACATGCATAACAGTACATAAC
ATACATAACATAACAATAAAAGTAACATACAAACAAAACAGTACATAACATACATAACATAACAA
TAAACGTAACATACAAA
Found at i:43645557 original size:146 final size:146
Alignment explanation
Indices: 43645269--43645585 Score: 433
Period size: 146 Copynumber: 2.2 Consensus size: 146
43645259 GTGATACATG
43645269 CATAACAGTACATAACATACATAACATAACAATAAACGTAACATACATGCATAACAGTACATAAC
1 CATAACAGTACATAACATACATAACATAACAATAAACGTAACATACATGCATAACAGTACATAAC
*
43645334 ATACATAACATACAATAAACGTAACATACAAACAAAACAGTACATAACATACATAACATAACAAT
66 ATACATAACATACAATAAAAGTAACATACAAACAAAACAGTACATAACATACATAACATAACAAT
*
43645399 AAACGTAACATACAAA
131 AAACATAACATACAAA
* * *
43645415 CATAACAGTTCATAACATACATAACATAATAGTAAACGTAACATACATGCATAACAGTACATAAC
1 CATAACAGTACATAACATACATAACATAACAATAAACGTAACATACATGCATAACAGTACATAAC
* ** * * * **
43645480 ATACATAACATAACAGTAAAAGTAACATACGTACATAATAGTACATTACATACATAACAGT-TTA
66 ATACATAACAT-ACAATAAAAGTAACATACAAACAAAACAGTACATAACATACATAACA-TAACA
* *
43645544 A-AAACATAGCATACATA
129 ATAAACATAACATACAAA
43645561 CATAAACAGTA-ATTAAACATACATA
1 CAT-AACAGTACA-T-AACATACATA
43645586 GCAAACATAC
Statistics
Matches: 150, Mismatches: 16, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
146 90 0.60
147 49 0.33
148 11 0.07
ACGTcount: A:0.54, C:0.19, G:0.06, T:0.21
Consensus pattern (146 bp):
CATAACAGTACATAACATACATAACATAACAATAAACGTAACATACATGCATAACAGTACATAAC
ATACATAACATACAATAAAAGTAACATACAAACAAAACAGTACATAACATACATAACATAACAAT
AAACATAACATACAAA
Found at i:43647870 original size:20 final size:22
Alignment explanation
Indices: 43647826--43647871 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 22
43647816 ATCTTTTTGT
43647826 TTAAAAATTGATTCAATTCTATTA
1 TTAAAAATTGATTCAA-T-TATTA
43647850 TTAAAAATTGATTCATATTATT
1 TTAAAAATTGATTCA-ATTATT
43647872 GACATAAGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 4 0.19
24 16 0.76
25 1 0.05
ACGTcount: A:0.41, C:0.07, G:0.04, T:0.48
Consensus pattern (22 bp):
TTAAAAATTGATTCAATTATTA
Found at i:43648498 original size:24 final size:25
Alignment explanation
Indices: 43648462--43648508 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
43648452 AATATAATAG
*
43648462 CAAAACAATAAAAA-AAAATAGTGA
1 CAAAACAACAAAAAGAAAATAGTGA
* *
43648486 CAAAACAGCAAAAAGATAATAGT
1 CAAAACAACAAAAAGAAAATAGT
43648509 ATTTTATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 12 0.63
25 7 0.37
ACGTcount: A:0.66, C:0.11, G:0.11, T:0.13
Consensus pattern (25 bp):
CAAAACAACAAAAAGAAAATAGTGA
Found at i:43648833 original size:18 final size:18
Alignment explanation
Indices: 43648810--43648850 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
43648800 TTCTTTTTAT
*
43648810 AAAATTTAA-AAAATTAA
1 AAAATTTAACAAAAATAA
43648827 CAAAA-TTAACAAAAATAA
1 -AAAATTTAACAAAAATAA
43648845 AAAATT
1 AAAATT
43648851 ATAGAAAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (18 bp):
AAAATTTAACAAAAATAA
Found at i:43653019 original size:24 final size:24
Alignment explanation
Indices: 43653004--43653081 Score: 104
Period size: 24 Copynumber: 3.2 Consensus size: 24
43652994 AGTTGCATAA
*
43653004 TCAGATTCAGACACAGATGCATGT
1 TCAGATTCAAACACAGATGCATGT
*
43653028 TCAGATTCAAACATAGATGCATGT
1 TCAGATTCAAACACAGATGCATGT
*
43653052 TCAGATTCAAATACA-ATTGCATGT
1 TCAGATTCAAACACAGA-TGCATGT
*
43653076 TTAGAT
1 TCAGAT
43653082 CCTACCCCCA
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
23 1 0.02
24 47 0.98
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.31
Consensus pattern (24 bp):
TCAGATTCAAACACAGATGCATGT
Found at i:43657377 original size:12 final size:12
Alignment explanation
Indices: 43657357--43657391 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
43657347 ACCCACAAAC
43657357 TAATGAAAATAA
1 TAATGAAAATAA
*
43657369 TAATTAAAATAA
1 TAATGAAAATAA
43657381 TAATGGAAAAT
1 TAAT-GAAAAT
43657392 TATCAAAGCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 15 0.75
13 5 0.25
ACGTcount: A:0.63, C:0.00, G:0.09, T:0.29
Consensus pattern (12 bp):
TAATGAAAATAA
Found at i:43670192 original size:34 final size:34
Alignment explanation
Indices: 43670149--43670213 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
43670139 TGATAGAATA
43670149 TTGGAAGGTTGTTTTGAGTAAAAGCATAAATAAT
1 TTGGAAGGTTGTTTTGAGTAAAAGCATAAATAAT
* *
43670183 TTGGAAGGTTTTTTTGAGTAAAATCATAAAT
1 TTGGAAGGTTGTTTTGAGTAAAAGCATAAAT
43670214 CTGAATGTCC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.37, C:0.03, G:0.22, T:0.38
Consensus pattern (34 bp):
TTGGAAGGTTGTTTTGAGTAAAAGCATAAATAAT
Found at i:43672462 original size:25 final size:25
Alignment explanation
Indices: 43672414--43672462 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
43672404 CTCTTCGTAG
* *
43672414 CTTCCCAATATTGGCTTATTTGAAT
1 CTTCCCAATATTGGCTCATATGAAT
* *
43672439 CTTCCCGATATTGGCTCGTATGAA
1 CTTCCCAATATTGGCTCATATGAA
43672463 CTTACCGTTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.39
Consensus pattern (25 bp):
CTTCCCAATATTGGCTCATATGAAT
Found at i:43679496 original size:17 final size:17
Alignment explanation
Indices: 43679470--43679506 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
43679460 ATGCACTGAT
*
43679470 ATGAATATGTAATGACA
1 ATGAAAATGTAATGACA
43679487 ATGAAAATGTAATGACA
1 ATGAAAATGTAATGACA
43679504 ATG
1 ATG
43679507 TACACTTATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.49, C:0.05, G:0.19, T:0.27
Consensus pattern (17 bp):
ATGAAAATGTAATGACA
Found at i:43685325 original size:229 final size:230
Alignment explanation
Indices: 43684916--43685339 Score: 697
Period size: 229 Copynumber: 1.8 Consensus size: 230
43684906 TGCCTCGTAT
* * *
43684916 TCAAGTATGATAAAATCAGCTGAAAAAATGAATGCATCCATACGAACTAAAATATCTTTCATTTA
1 TCAAGTATGATAAAATCAGCCGAAAAAATAAATGCATCCACACGAACTAAAATATCTTTCATTTA
* *
43684981 CCCTTCAAGTTGAGCTAAAGATCAATCTGCAAGTTGCAATGTCACTGTAATGAGTTTCATATGAC
66 CCCTTCAAGTTGAGCTAAAAATCAATCTGCAAGTTGCAATGTCACTGTAATGAGTTTCATATAAC
* * *
43685046 CAATTCCCAACTTTCTAAAAGTAGATAGTGGCATGAGACTGATTCTAGCTCCC-AATTGCATAAA
131 CAATTCCCAACTTTCTAAAAGTAGATAATGGCATGAGACTGATGCTAGCTCCCAAATCGCATAAA
43685110 GCTTTTCCCAAATAATGATTTCCAATCGAACATAG
196 GCTTTTCCCAAATAATGATTTCCAATCGAACATAG
* ** *
43685145 TCAAGTATGATAAAATCAGCCGGAAAAATAAATTTATCCACACGAACTAAAATATCTTTCATTTT
1 TCAAGTATGATAAAATCAGCCGAAAAAATAAATGCATCCACACGAACTAAAATATCTTTCATTTA
* * *
43685210 CCCTTCAAGTTGAGCTAAAAATCGATCTGCAAGTTGTAATGTCACTGTAATGGGTTTCATATAAC
66 CCCTTCAAGTTGAGCTAAAAATCAATCTGCAAGTTGCAATGTCACTGTAATGAGTTTCATATAAC
*
43685275 CAATTCCCAACTTTCTAAAAGTAGATAATGGCATGAGATTGATGCTAGCTCCCAAATCGCATAAA
131 CAATTCCCAACTTTCTAAAAGTAGATAATGGCATGAGACTGATGCTAGCTCCCAAATCGCATAAA
43685340 ATGGTAAAGC
Statistics
Matches: 178, Mismatches: 16, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
229 168 0.94
230 10 0.06
ACGTcount: A:0.37, C:0.19, G:0.14, T:0.30
Consensus pattern (230 bp):
TCAAGTATGATAAAATCAGCCGAAAAAATAAATGCATCCACACGAACTAAAATATCTTTCATTTA
CCCTTCAAGTTGAGCTAAAAATCAATCTGCAAGTTGCAATGTCACTGTAATGAGTTTCATATAAC
CAATTCCCAACTTTCTAAAAGTAGATAATGGCATGAGACTGATGCTAGCTCCCAAATCGCATAAA
GCTTTTCCCAAATAATGATTTCCAATCGAACATAG
Found at i:43689061 original size:13 final size:13
Alignment explanation
Indices: 43689043--43689069 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
43689033 GATGATAGAG
43689043 AAATGGTAGAGAA
1 AAATGGTAGAGAA
43689056 AAATGGTAGAGAA
1 AAATGGTAGAGAA
43689069 A
1 A
43689070 GAAAACCAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.30, T:0.15
Consensus pattern (13 bp):
AAATGGTAGAGAA
Found at i:43694104 original size:93 final size:94
Alignment explanation
Indices: 43693913--43694116 Score: 220
Period size: 93 Copynumber: 2.2 Consensus size: 94
43693903 ATAAAGTAGC
* * *
43693913 AATCTTATCTCCCT-AAAGTTGCAGTAGAGTAAGATGAAGCTACAAATCTTATACCCCTGAAATT
1 AATCTTATCTCCCTGAAAG-TGCAGTAAAGCAAGATGAAGCTACAAATCCTATACCCCTGAAATT
* **
43693977 GTAGTCGGTTGGAATGAAGCTATAATAATG
65 GTAGTCGGTTGGAATGAAGCTACAATAACA
* * *
43694007 AATCTTATCTCCCTGAAA-TGCAGTAAAGCAAGATGAAGTTATAAATCCTATA-CCCTTAAATT-
1 AATCTTATCTCCCTGAAAGTGCAGTAAAGCAAGATGAAGCTACAAATCCTATACCCCTGAAATTG
* **
43694069 TA-TAACGGGTTGGAATGCAGCTACAATGGCA
66 TAGT--C-GGTTGGAATGAAGCTACAATAACA
*
43694100 AATCTTATCTCTCTGAA
1 AATCTTATCTCCCTGAA
43694117 TTTGTAGTGG
Statistics
Matches: 93, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
90 1 0.01
91 2 0.02
92 10 0.11
93 63 0.68
94 14 0.15
95 3 0.03
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30
Consensus pattern (94 bp):
AATCTTATCTCCCTGAAAGTGCAGTAAAGCAAGATGAAGCTACAAATCCTATACCCCTGAAATTG
TAGTCGGTTGGAATGAAGCTACAATAACA
Found at i:43694347 original size:186 final size:185
Alignment explanation
Indices: 43694033--43694516 Score: 655
Period size: 186 Copynumber: 2.6 Consensus size: 185
43694023 AATGCAGTAA
* * * * * * *
43694033 AGCAAGATGAAGTTATAAATCCTATACCCTTAAATTTATAACGGGTTGGAATGCAGCTACAATGG
1 AGCAAGATGAAGCTACAAATCATATACCCTTAAAGTTGTAATGGGTTGGAATGAAGCTACAATGG
* * * * *
43694098 CAAATCTTATCTCTCTGAATTTGTAGTGGGGCAAGATAAAGTTACAACATTAAATATGGTTTTCT
66 CAAATCTTATCTCCCTAAAGTTGCAGT-GGGCAAGATAAAGCTACAACATTAAATATGGTTTTCT
* * * * *
43694163 TGAAGTTGCAGTGAAATGGATAAAGTAGCAATATTATCTCCTTAAAGTTGTAATGG
130 TGAAGTTGCAGTGAAATAGATAAAGCAACAATATTATCTCCCTAAAGTTGCAATGG
* * * *
43694219 AGCAAGATGAAGCTACAAATCATATACCCCTAAAGCTGTAGTGGGTTGGAATAAAGCTACAATGG
1 AGCAAGATGAAGCTACAAATCATATACCCTTAAAGTTGTAATGGGTTGGAATGAAGCTACAATGG
*
43694284 CAAATCTTATCTCCCTAAAGTTGCAGTGAGGCAAGATAAAGCTACAACATTAAATTTGGTTTTCT
66 CAAATCTTATCTCCCTAAAGTTGCAGTG-GGCAAGATAAAGCTACAACATTAAATATGGTTTTCT
*
43694349 TGAAGTTGCAGTGAAATAGATAAAGCAACAATCTTATCTCCCTAAAGTTGCAATGG
130 TGAAGTTGCAGTGAAATAGATAAAGCAACAATATTATCTCCCTAAAGTTGCAATGG
* * * * *
43694405 AGTAAGATGAAGCTACAAAT-ACTATACCCTTAAAGTTGCATTGGGTTGGAGTGAAGCTACAATA
1 AGCAAGATGAAGCTACAAATCA-TATACCCTTAAAGTTGTAATGGGTTGGAATGAAGCTACAATG
* *
43694469 GCGAATCTTGTCTCCCTAAAGTTGCAGTGGAGCAAGATAAAGCTACAA
65 GCAAATCTTATCTCCCTAAAGTTGCAGTGG-GCAAGATAAAGCTACAA
43694517 ATCCCGTATC
Statistics
Matches: 262, Mismatches: 33, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
185 3 0.01
186 259 0.99
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.29
Consensus pattern (185 bp):
AGCAAGATGAAGCTACAAATCATATACCCTTAAAGTTGTAATGGGTTGGAATGAAGCTACAATGG
CAAATCTTATCTCCCTAAAGTTGCAGTGGGCAAGATAAAGCTACAACATTAAATATGGTTTTCTT
GAAGTTGCAGTGAAATAGATAAAGCAACAATATTATCTCCCTAAAGTTGCAATGG
Found at i:43694709 original size:237 final size:237
Alignment explanation
Indices: 43694437--43694994 Score: 801
Period size: 237 Copynumber: 2.4 Consensus size: 237
43694427 TATACCCTTA
* * * * *
43694437 AAGTTGCATTGGGTTGGAGTGAAGCTACAATAGCGAATCTTGTCTCCCTAAAGTTGCAGTGGAGC
1 AAGTTGCAGTAGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTAAAGTTGTAGTGGAGC
* *
43694502 AAGATAAAGCTACAAATCCCGTATCCCTGAAGATATAGTAGATCAGATTGAAACTACAATAGCAA
66 AAGATAAAGCTACAAATCCCGTATCCCTGAAGATACAATAGATCAGATTGAAACTACAATAGCAA
* * *
43694567 ATCTCATCTCCACAAAGACGCAATAGTGCAAGATAAAGCTACAATATTAAATCTAGTTTTCTTGA
131 ATCTCATCTCCACAAAGACACAATAGGGCAAGATAAAGCTACAACATTAAATCTAGTTTTCTTGA
* * *
43694632 AGTTGCAATGAAACATATAAAGCAGCAATTCCAATCCCCCTG
196 AGCTGCAATGAAACAGATAAAGCAACAATTCCAATCCCCCTG
* *
43694674 AAGTTGCAGTAGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCACTGAAGTTGTAGTGGAGC
1 AAGTTGCAGTAGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTAAAGTTGTAGTGGAGC
* * * *
43694739 AAGATAAAGTTACAAATCTCGTATCCTTGAAGATGCAATAGATCAGATTGAAACTACAATAGCAA
66 AAGATAAAGCTACAAATCCCGTATCCCTGAAGATACAATAGATCAGATTGAAACTACAATAGCAA
* * * * * * *
43694804 ATCTCATCTCTACGAAGATACAATGGGGTAAGATAAAGCTACAACATTAAATTTGGTTTTCTTGA
131 ATCTCATCTCCACAAAGACACAATAGGGCAAGATAAAGCTACAACATTAAATCTAGTTTTCTTGA
* * *
43694869 AGCTGCAGTGAAACAGATAAAGCAACAATTCTAGTCCCCCTG
196 AGCTGCAATGAAACAGATAAAGCAACAATTCCAATCCCCCTG
* * * *
43694911 AAGTAGCAGTAGGTTGAAATGAAGCTACAATAGCGAATCTTATCTCCTTAAAATTGTAGTGGAGC
1 AAGTTGCAGTAGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTAAAGTTGTAGTGGAGC
* *
43694976 AAGATGAAGCTGCAAATCC
66 AAGATAAAGCTACAAATCC
43694995 TATACTCTTG
Statistics
Matches: 282, Mismatches: 39, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
237 282 1.00
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.26
Consensus pattern (237 bp):
AAGTTGCAGTAGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTAAAGTTGTAGTGGAGC
AAGATAAAGCTACAAATCCCGTATCCCTGAAGATACAATAGATCAGATTGAAACTACAATAGCAA
ATCTCATCTCCACAAAGACACAATAGGGCAAGATAAAGCTACAACATTAAATCTAGTTTTCTTGA
AGCTGCAATGAAACAGATAAAGCAACAATTCCAATCCCCCTG
Found at i:43697948 original size:31 final size:30
Alignment explanation
Indices: 43697900--43697962 Score: 74
Period size: 31 Copynumber: 2.1 Consensus size: 30
43697890 ACTTTATATT
*
43697900 AATTTATTAAATTAAATTAAAAATGTTACTA
1 AATTTATTAAATAAAATTAAAAATGTTA-TA
* *
43697931 AATTTATTATAA-AAAATTATAAATTTTATA
1 AATTTATTA-AATAAAATTAAAAATGTTATA
43697961 AA
1 AA
43697963 AAAATCAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
30 4 0.14
31 22 0.79
32 2 0.07
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (30 bp):
AATTTATTAAATAAAATTAAAAATGTTATA
Found at i:43698455 original size:51 final size:51
Alignment explanation
Indices: 43698397--43698498 Score: 195
Period size: 51 Copynumber: 2.0 Consensus size: 51
43698387 TAGTTGACAA
*
43698397 AGTACAATATTATTTAATTACATAAACAATATAATGGTTTTGTTTTTTTAT
1 AGTACAATATTATTTAATTACATAAACAATATAATGGTTTTGCTTTTTTAT
43698448 AGTACAATATTATTTAATTACATAAACAATATAATGGTTTTGCTTTTTTAT
1 AGTACAATATTATTTAATTACATAAACAATATAATGGTTTTGCTTTTTTAT
43698499 TTAGTGGATA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.37, C:0.07, G:0.08, T:0.48
Consensus pattern (51 bp):
AGTACAATATTATTTAATTACATAAACAATATAATGGTTTTGCTTTTTTAT
Found at i:43706744 original size:6 final size:6
Alignment explanation
Indices: 43706735--43706768 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
43706725 TTATTTTCTT
43706735 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTT
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTT
43706769 CTATTTTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (6 bp):
TTTTAA
Found at i:43708588 original size:60 final size:60
Alignment explanation
Indices: 43708495--43708619 Score: 250
Period size: 60 Copynumber: 2.1 Consensus size: 60
43708485 AAAGACCCTA
43708495 TACTTAAGTGTTTGTTCTAGTGTAATACCTATATTTTCAAAATGTCCAATTTAATTTTTG
1 TACTTAAGTGTTTGTTCTAGTGTAATACCTATATTTTCAAAATGTCCAATTTAATTTTTG
43708555 TACTTAAGTGTTTGTTCTAGTGTAATACCTATATTTTCAAAATGTCCAATTTAATTTTTG
1 TACTTAAGTGTTTGTTCTAGTGTAATACCTATATTTTCAAAATGTCCAATTTAATTTTTG
43708615 TACTT
1 TACTT
43708620 TGCTTCTTCT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 65 1.00
ACGTcount: A:0.28, C:0.12, G:0.11, T:0.49
Consensus pattern (60 bp):
TACTTAAGTGTTTGTTCTAGTGTAATACCTATATTTTCAAAATGTCCAATTTAATTTTTG
Found at i:43711712 original size:16 final size:16
Alignment explanation
Indices: 43711687--43711728 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
43711677 TTAATCATAT
* *
43711687 TTAAACATATTTATTA
1 TTAAATATATTTATAA
43711703 TTAAATATA-TTATAA
1 TTAAATATATTTATAA
43711718 TTAAAATATAT
1 TT-AAATATAT
43711729 AATTTAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 7 0.32
16 15 0.68
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (16 bp):
TTAAATATATTTATAA
Found at i:43711735 original size:14 final size:15
Alignment explanation
Indices: 43711687--43711737 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
43711677 TTAATCATAT
* *
43711687 TTAAACATATTTATTA
1 TTAAATATA-TTATAA
43711703 TTAAATATATTATAA
1 TTAAATATATTATAA
43711718 TTAAA-ATA-TATAA
1 TTAAATATATTATAA
*
43711731 TTTAATA
1 TTAAATA
43711738 AAATTCTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
13 9 0.29
14 4 0.13
15 10 0.32
16 8 0.26
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (15 bp):
TTAAATATATTATAA
Found at i:43711826 original size:120 final size:120
Alignment explanation
Indices: 43711685--43711931 Score: 440
Period size: 120 Copynumber: 2.0 Consensus size: 120
43711675 ATTTAATCAT
*
43711685 ATTTAAACATATTTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTT-AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
*
43711750 ATCAATATTCTTATATGAATTTACTCAAATAATAATATGTGATACTATAAAATATA
65 ATCAATATTCTTATATGAATTTACTCAAATAATAATATATGATACTATAAAATATA
43711806 ATTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA
1 ATTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA
* *
43711871 TTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
66 TCAATATTCTTATATGAATTTACTCAAATAATAATATATGATACTATAAAATATA
*
43711926 TTTTAA
1 ATTTAA
43711932 TTAAAATATA
Statistics
Matches: 121, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
120 117 0.97
121 4 0.03
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.44
Consensus pattern (120 bp):
ATTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA
TCAATATTCTTATATGAATTTACTCAAATAATAATATATGATACTATAAAATATA
Found at i:43711846 original size:16 final size:16
Alignment explanation
Indices: 43711802--43711848 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
43711792 TACTATAAAA
*
43711802 TATAATTTAACATA-AT
1 TATAA-TTAAAATATAT
*
43711818 TATTATT-AAATATAT
1 TATAATTAAAATATAT
43711833 TATAATTAAAATATAT
1 TATAATTAAAATATAT
43711849 AATTTAATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 4 0.15
15 10 0.38
16 12 0.46
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (16 bp):
TATAATTAAAATATAT
Found at i:43711920 original size:61 final size:61
Alignment explanation
Indices: 43711735--43711922 Score: 176
Period size: 61 Copynumber: 3.1 Consensus size: 61
43711725 ATATAATTTA
* *
43711735 ATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATAATAATATGTGATACT
1 ATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATAATAATATATGATACT
* * * * * * *
43711796 ATAAAA-T-ATAATTTAACATAATTATTATTAAAT--ATATTA-T-AATTAA-AATATATAAT-T
1 ATAAAATTCTTAA--TAA-TTAA-TATTCTTATATGAAT-TTACTCAAATAATAATATATGATAC
43711853 T
61 T
*
43711854 AATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT
1 -ATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATAATAATATATGATACT
43711916 ATAAAAT
1 ATAAAAT
43711923 ATATTTTAAT
Statistics
Matches: 96, Mismatches: 17, Indels: 28
0.68 0.12 0.20
Matches are distributed among these distances:
57 9 0.09
58 7 0.07
59 23 0.24
60 11 0.11
61 31 0.32
62 6 0.06
63 9 0.09
ACGTcount: A:0.48, C:0.07, G:0.03, T:0.42
Consensus pattern (61 bp):
ATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATAATAATATATGATACT
Found at i:43711938 original size:16 final size:16
Alignment explanation
Indices: 43711916--43711955 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 16
43711906 ATATGATACT
43711916 ATAAAATATAT-TTTA
1 ATAAAATATATATTTA
43711931 ATTAAAATATATGATTTA
1 A-TAAAATATAT-ATTTA
43711949 ATAAAAT
1 ATAAAAT
43711956 TTAAAATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 1 0.05
16 10 0.45
17 6 0.27
18 5 0.23
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (16 bp):
ATAAAATATATATTTA
Found at i:43711955 original size:17 final size:17
Alignment explanation
Indices: 43711903--43711955 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
43711893 CTCAAATCAT
*
43711903 AATATATGATACT-ATAA
1 AATATATGAT-TTAATAA
43711920 AATATAT--TTTAATTAA
1 AATATATGATTTAA-TAA
43711936 AATATATGATTTAATAA
1 AATATATGATTTAATAA
43711953 AAT
1 AAT
43711956 TTAAAATAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
14 1 0.03
15 2 0.06
16 10 0.32
17 13 0.42
18 5 0.16
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.42
Consensus pattern (17 bp):
AATATATGATTTAATAA
Found at i:43711986 original size:120 final size:119
Alignment explanation
Indices: 43711697--43711978 Score: 365
Period size: 120 Copynumber: 2.4 Consensus size: 119
43711687 TTAAACATAT
* * *
43711697 TTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATATTCTT
1 TTATGATTAAATAAATTATAA-TAAAATATATAATCTAATAAAATTCTTAATAATCAATATTCTT
* *
43711762 ATATGAATTTACTCAAATAATAATATGTGATACTATAAAATATAATTTAACATAA
65 ATATGAATTTACTCAAATAATAATATATGATACTATAAAATATAATTTAACAAAA
* * * *
43711817 TTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTT
1 TTATGATTAAATAAATTATAA-TAAAATATATAATCTAATAAAATTCTTAATAATCAATATTCTT
* * *
43711882 ATATGAATTTACTCAAATCATAATATATGATACTATAAAATATATTTTAATTAAAA
65 ATATGAATTTACTCAAATAATAATATATGATACTATAAAATATAATTTAA-CAAAA
*
43711938 TATATGATTTAATAAAATT-TAA-AATAAT-TATAA-CTAATAAA
1 T-TATGATTAAAT-AAATTATAATAA-AATATATAATCTAATAAA
43711979 TTTTCTTATA
Statistics
Matches: 148, Mismatches: 10, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
119 7 0.05
120 118 0.80
121 7 0.05
122 12 0.08
123 4 0.03
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (119 bp):
TTATGATTAAATAAATTATAATAAAATATATAATCTAATAAAATTCTTAATAATCAATATTCTTA
TATGAATTTACTCAAATAATAATATATGATACTATAAAATATAATTTAACAAAA
Found at i:43712004 original size:47 final size:46
Alignment explanation
Indices: 43711938--43712196 Score: 175
Period size: 47 Copynumber: 5.7 Consensus size: 46
43711928 TTAATTAAAA
* *
43711938 TATATG-ATTTAATAAAATTTAAAATAATTATAACTAATAAATTTTCT
1 TATATGAATTT-ATATAATTTAAAATAATTATAA-TAATAAATTTTAT
* * * *
43711985 TATATGAATTTGTATAATTTAAAATAATAATTATTAAATATAA-TTTAA
1 TATATGAATTTATATAATTTAAAATAATTA-TAAT-AATA-AATTTTAT
* * * *
43712033 TA-AT-AA--TATATAATTTCATAA-AATTCTTGATAATAAATTTTTT
1 TATATGAATTTATATAATTT-AAAATAATT-ATAATAATAAATTTTAT
* * *
43712076 TATATGAATTTATATAATTTAAAATAATTAATATGTTATATAA-TTTAA
1 TATATGAATTTATATAATTTAAAATAATT-ATA-ATAATA-AATTTTAT
* * *
43712124 TA-ATG-A--TATATAATTTCATAA-AATTATTGATAATAAATTTTCT
1 TATATGAATTTATATAATTT-AAAATAATTA-TAATAATAAATTTTAT
43712167 TATATGAATTTATATAATTTAAAATAATTA
1 TATATGAATTTATATAATTTAAAATAATTA
43712197 ATATTAAATA
Statistics
Matches: 161, Mismatches: 29, Indels: 44
0.69 0.12 0.19
Matches are distributed among these distances:
42 4 0.02
43 19 0.12
44 34 0.21
45 9 0.06
46 9 0.06
47 58 0.36
48 24 0.15
49 4 0.02
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.47
Consensus pattern (46 bp):
TATATGAATTTATATAATTTAAAATAATTATAATAATAAATTTTAT
Found at i:43712016 original size:13 final size:13
Alignment explanation
Indices: 43711998--43712040 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
43711988 ATGAATTTGT
43711998 ATAATTTAAAATA
1 ATAATTTAAAATA
*
43712011 ATAATTATTAAAT-
1 ATAATT-TAAAATA
43712024 ATAATTTAATAATA
1 ATAATTTAA-AATA
43712038 ATA
1 ATA
43712041 TATAATTTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
12 2 0.08
13 15 0.60
14 8 0.32
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (13 bp):
ATAATTTAAAATA
Found at i:43712020 original size:195 final size:185
Alignment explanation
Indices: 43711801--43712286 Score: 571
Period size: 182 Copynumber: 2.6 Consensus size: 185
43711791 ATACTATAAA
* * *
43711801 ATATAATTTAACATAATTATTATTAAATAT-ATTATAATTAA-AATATATAATTTAATAAAATTC
1 ATATAATTTAAAATAATAATTATTAAATATAATT-TAA-TAATAATATATAATTTCATAAAATTC
*
43711864 TTAATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATATT-
64 TTAATAATAAATATTCTTATATGAATTTACT-AAATCATAATATAT-A-A-T-T--AATATATTA
43711928 T-TAATTAAAATATATGATTTAATAAAATTT-AAAATAATTA-TAACTAATAAATTTTCTTATAT
122 TATAATT-AAATA-ATGA--T-ATAAAATTTCAAAA-AATTATTAA-TAATAAATTTTCTTATAT
43711990 GAATTT
180 GAATTT
*
43711996 GTATAATTTAAAATAATAATTATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCTT
1 ATATAATTTAAAATAATAATTATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCTT
* * * * * *
43712061 GATAATAAATTTTTTTATATGAATTTA-TATAAT-TTAA-A-ATAATTAATATGTTATATAATTT
66 AATAATAAATATTCTTATATGAATTTACTA-AATCATAATATATAATTAATATATTATATAATTA
* * *
43712122 AATAATGATATATAATTTCATAAAATTATTGATAATAAATTTTCTTATATGAATTT
130 AATAATGATATAAAATTTCAAAAAATTATTAATAATAAATTTTCTTATATGAATTT
*
43712178 ATATAATTTAAAATAATTAA-TATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCT
1 ATATAATTTAAAATAA-TAATTATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCT
*
43712242 TAATAATAAAATGTTCTTATATGAATTTACTAAAATCATAATATA
65 TAATAAT-AAATATTCTTATATGAATTTACT-AAATCATAATATA
43712287 ACTTGAGAAT
Statistics
Matches: 257, Mismatches: 20, Indels: 36
0.82 0.06 0.12
Matches are distributed among these distances:
182 101 0.39
183 28 0.11
184 4 0.02
185 15 0.06
186 6 0.02
187 7 0.03
188 1 0.00
189 1 0.00
190 1 0.00
191 2 0.01
192 1 0.00
193 4 0.02
194 7 0.03
195 76 0.30
196 3 0.01
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (185 bp):
ATATAATTTAAAATAATAATTATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCTT
AATAATAAATATTCTTATATGAATTTACTAAATCATAATATATAATTAATATATTATATAATTAA
ATAATGATATAAAATTTCAAAAAATTATTAATAATAAATTTTCTTATATGAATTT
Found at i:43712069 original size:91 final size:91
Alignment explanation
Indices: 43711972--43712270 Score: 494
Period size: 91 Copynumber: 3.3 Consensus size: 91
43711962 TAATTATAAC
*
43711972 TAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAA-TAATTATTAAATATAATTTAATAA
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAA-TATTAAATATAATTTAATAA
*
43712036 TAATATATAATTTCATAAAATTCTTGA
65 TGATATATAATTTCATAAAATTCTTGA
* *
43712063 TAATAAATTTTTTTATATGAATTTATATAATTTAAAATAATTAATATGT-TATATAATTTAATAA
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATAT-TAAATATAATTTAATAA
*
43712127 TGATATATAATTTCATAAAATTATTGA
65 TGATATATAATTTCATAAAATTCTTGA
43712154 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
43712219 GATATATAATTTCATAAAATTCTTAA
66 GATATATAATTTCATAAAATTCTTGA
*
43712245 TAATAAAATGTTCTTATATGAATTTA
1 TAAT-AAATTTTCTTATATGAATTTA
43712271 CTAAAATCAT
Statistics
Matches: 194, Mismatches: 10, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
90 1 0.01
91 169 0.87
92 24 0.12
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.47
Consensus pattern (91 bp):
TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
GATATATAATTTCATAAAATTCTTGA
Found at i:43712089 original size:10 final size:9
Alignment explanation
Indices: 43712074--43712139 Score: 50
Period size: 10 Copynumber: 7.3 Consensus size: 9
43712064 AATAAATTTT
43712074 TTTATATGAA
1 TTTATAT-AA
43712084 TTTATATAA
1 TTTATATAA
*
43712093 TTTAAAATAA
1 TTT-ATATAA
43712103 -TTA-AT-A
1 TTTATATAA
43712109 TGTTATATAA
1 T-TTATATAA
43712119 TTTA-ATAA
1 TTTATATAA
*
43712127 TGATATATAA
1 T-TTATATAA
43712137 TTT
1 TTT
43712140 CATAAAATTA
Statistics
Matches: 46, Mismatches: 3, Indels: 15
0.72 0.05 0.23
Matches are distributed among these distances:
6 1 0.02
7 2 0.04
8 9 0.20
9 15 0.33
10 19 0.41
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (9 bp):
TTTATATAA
Found at i:43712135 original size:18 final size:18
Alignment explanation
Indices: 43712099--43712144 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
43712089 ATAATTTAAA
*
43712099 ATAA-TTAAT-ATGTTAT
1 ATAATTTAATAATGATAT
43712115 ATAATTTAATAATGATAT
1 ATAATTTAATAATGATAT
*
43712133 ATAATTTCATAA
1 ATAATTTAATAA
43712145 AATTATTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
16 4 0.15
17 5 0.19
18 17 0.65
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (18 bp):
ATAATTTAATAATGATAT
Found at i:43716570 original size:71 final size:71
Alignment explanation
Indices: 43716454--43716627 Score: 199
Period size: 71 Copynumber: 2.5 Consensus size: 71
43716444 CGTAACAAAG
* * * *
43716454 TTTTGCGCCTAGCGTTAGTCAAATAAACCGACGATAGGTGTGCCCTGCACTAG-CTGGATAAACT
1 TTTTGCGCCCAACGCTAGTCAAATAAACCGACGATAGGTGTGCCCTACACTAGTC-GGATAAACT
43716518 GAAAATA
65 GAAAATA
* *
43716525 TTTTGCGCCCAACGCTAGTCGAATAAACCGATGATAGGTGTGCCCTACACTAGTCGGATAAA-TC
1 TTTTGCGCCCAACGCTAGTCAAATAAACCGACGATAGGTGTGCCCTACACTAGTCGGATAAACT-
* *
43716589 GACAATG
65 GAAAATA
* * * * *
43716596 TTTTGCGGCCAGCACTAGTCAGATAAATCGAC
1 TTTTGCGCCCAACGCTAGTCAAATAAACCGAC
43716628 AATGTCAAAT
Statistics
Matches: 86, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
70 1 0.01
71 84 0.98
72 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (71 bp):
TTTTGCGCCCAACGCTAGTCAAATAAACCGACGATAGGTGTGCCCTACACTAGTCGGATAAACTG
AAAATA
Found at i:43716579 original size:35 final size:35
Alignment explanation
Indices: 43716469--43716586 Score: 94
Period size: 35 Copynumber: 3.3 Consensus size: 35
43716459 CGCCTAGCGT
* * *
43716469 TAGTCAAATAAACCGACGATAGGTGTGCCCTGCAC
1 TAGTCGAATAAACCGAAGATAGGTGTGCCCTACAC
* * * ** * * *
43716504 TAG-CTGGATAAACTGAAAATATTTTGCGCCCAACGC
1 TAGTC-GAATAAACCGAAGATA-GGTGTGCCCTACAC
*
43716540 TAGTCGAATAAACCGATGATAGGTGTGCCCTACAC
1 TAGTCGAATAAACCGAAGATAGGTGTGCCCTACAC
*
43716575 TAGTCGGATAAA
1 TAGTCGAATAAA
43716587 TCGACAATGT
Statistics
Matches: 59, Mismatches: 21, Indels: 6
0.69 0.24 0.07
Matches are distributed among these distances:
34 1 0.02
35 34 0.58
36 23 0.39
37 1 0.02
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.23
Consensus pattern (35 bp):
TAGTCGAATAAACCGAAGATAGGTGTGCCCTACAC
Found at i:43716615 original size:36 final size:36
Alignment explanation
Indices: 43716572--43716698 Score: 146
Period size: 36 Copynumber: 3.4 Consensus size: 36
43716562 GTGTGCCCTA
*
43716572 CACTAGTCGGATAAATCGACAATGTTTTGCGGCCAG
1 CACTAGTCGGATAAATCGACAATGTATTGCGGCCAG
* * *
43716608 CACTAGTCAGATAAATCGACAATGTCAAATGTGTGCCTAG
1 CACTAGTCGGATAAATCGACAATGT--ATTGCG-GCC-AG
* * *
43716648 CACTAGTCGGATAAACCGACAATGAATTGCGCCCAG
1 CACTAGTCGGATAAATCGACAATGTATTGCGGCCAG
*
43716684 CGCTAGTCGGATAAA
1 CACTAGTCGGATAAA
43716699 CTGAAAATGT
Statistics
Matches: 76, Mismatches: 11, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
36 40 0.53
37 2 0.03
38 7 0.09
39 3 0.04
40 24 0.32
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.22
Consensus pattern (36 bp):
CACTAGTCGGATAAATCGACAATGTATTGCGGCCAG
Found at i:43716658 original size:76 final size:76
Alignment explanation
Indices: 43716562--43716717 Score: 217
Period size: 76 Copynumber: 2.1 Consensus size: 76
43716552 CCGATGATAG
* ** *
43716562 GTGTGCCCTACACTAGTCGGATAAATCGACAATGTTTTGCGGCCAGCACTAGTCAGATAAA-TCG
1 GTGTGCCCTACACTAGTCGGATAAACCGACAATGAATTGCGCCCAGCACTAGTCAGATAAACT-G
*
43716626 ACAATGTCAAAT
65 AAAATGTCAAAT
* *
43716638 GTGTG-CCTAGCACTAGTCGGATAAACCGACAATGAATTGCGCCCAGCGCTAGTCGGATAAACTG
1 GTGTGCCCTA-CACTAGTCGGATAAACCGACAATGAATTGCGCCCAGCACTAGTCAGATAAACTG
43716702 AAAATGTCAAAT
65 AAAATGTCAAAT
43716714 GTGT
1 GTGT
43716718 TTACGTAATT
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
75 4 0.06
76 66 0.93
77 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.24
Consensus pattern (76 bp):
GTGTGCCCTACACTAGTCGGATAAACCGACAATGAATTGCGCCCAGCACTAGTCAGATAAACTGA
AAATGTCAAAT
Found at i:43716661 original size:40 final size:39
Alignment explanation
Indices: 43716604--43716717 Score: 128
Period size: 36 Copynumber: 2.9 Consensus size: 39
43716594 TGTTTTGCGG
*
43716604 CCAGCACTAGTCAGATAAATCGACAATGTCAAATGTGTGC
1 CCAGCACTAGTCGGATAAA-CGACAATGTCAAATGTGTGC
* *
43716644 CTAGCACTAGTCGGATAAACCGACAATG---AAT-TGCGC
1 CCAGCACTAGTCGGATAAA-CGACAATGTCAAATGTGTGC
* *
43716680 CCAGCGCTAGTCGGATAAACTGAAAATGTCAAATGTGT
1 CCAGCACTAGTCGGATAAAC-GACAATGTCAAATGTGT
43716718 TTACGTAATT
Statistics
Matches: 61, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
35 1 0.02
36 27 0.44
37 3 0.05
39 3 0.05
40 27 0.44
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22
Consensus pattern (39 bp):
CCAGCACTAGTCGGATAAACGACAATGTCAAATGTGTGC
Found at i:43720593 original size:159 final size:158
Alignment explanation
Indices: 43720304--43720625 Score: 626
Period size: 159 Copynumber: 2.0 Consensus size: 158
43720294 ATGTTTAACT
43720304 CAACAATTCATCTTATAATTATCATTTCACACATTTACCCCCCAACAATTTAATTTCATTCAATT
1 CAACAATTCATCTTATAATTATCATTTCACACATTTACCCCCCAACAATTTAATTTCATTCAATT
43720369 TAGTCCATACTTCAATATTCAAGCAATTAACATCATTAAATTAAATCTCTTCTCAACCAAATTTA
66 TAGTCCATACTTCAATATTCAAGCAATTAACATCATTAAATTAAATCTCTTCTCAACCAAATTTA
43720434 TAGAGTCCTAAAACAGTCCCTATACTACC
131 TAGAGTCCTAAAACAGTCCCTATACTA-C
*
43720463 CAACAATTCATCTTATAATTATCATTTCACACATTTACCCCCCAACAATTTAATTTCATTTAATT
1 CAACAATTCATCTTATAATTATCATTTCACACATTTACCCCCCAACAATTTAATTTCATTCAATT
43720528 TAGTCCATACTTCAATATTCAAGCAATTAACATCATTAAATTAAATCTCTTCTCAACCAAATTTA
66 TAGTCCATACTTCAATATTCAAGCAATTAACATCATTAAATTAAATCTCTTCTCAACCAAATTTA
43720593 TAGAGTCCTAAAACAGTCCCTATACTAC
131 TAGAGTCCTAAAACAGTCCCTATACTAC
43720621 CAACA
1 CAACA
43720626 TTCTATAGTT
Statistics
Matches: 162, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
158 6 0.04
159 156 0.96
ACGTcount: A:0.38, C:0.25, G:0.03, T:0.34
Consensus pattern (158 bp):
CAACAATTCATCTTATAATTATCATTTCACACATTTACCCCCCAACAATTTAATTTCATTCAATT
TAGTCCATACTTCAATATTCAAGCAATTAACATCATTAAATTAAATCTCTTCTCAACCAAATTTA
TAGAGTCCTAAAACAGTCCCTATACTAC
Found at i:43722158 original size:66 final size:66
Alignment explanation
Indices: 43722033--43722158 Score: 157
Period size: 66 Copynumber: 1.9 Consensus size: 66
43722023 TGTTGTATGT
* * * *
43722033 TAAATAGCTTATTAATGACTGTTTCTTGTATGCAAAAGGTTTTTTTTAATTAAGTATAAATATCG
1 TAAATAGCTTATTAATGACAGTTTCTTGTATGCAAAAGGTTTTTTCTAATCAAATATAAATATCG
43722098 A
66 A
* **
43722099 TAAATAGCTTATTAATGACAGTTTGTTGTATGTTAAA-GTTTTTTCT-ATACAAATAATAAA
1 TAAATAGCTTATTAATGACAGTTTCTTGTATGCAAAAGGTTTTTTCTAAT-CAAAT-ATAAA
43722159 GTTAAATACG
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
64 2 0.04
65 11 0.22
66 38 0.75
ACGTcount: A:0.37, C:0.07, G:0.13, T:0.44
Consensus pattern (66 bp):
TAAATAGCTTATTAATGACAGTTTCTTGTATGCAAAAGGTTTTTTCTAATCAAATATAAATATCG
A
Found at i:43723382 original size:90 final size:90
Alignment explanation
Indices: 43723282--43723542 Score: 294
Period size: 90 Copynumber: 2.9 Consensus size: 90
43723272 AATTATCTTA
* * *
43723282 CAGCTATTATCTGA-AATTATGTTGTGTACTCACAACCATCCGACACCGTATTCACCTGCAATTT
1 CAGCTATTATCT-ACAATTATGTTGTGTACTCACAACCATCCGACAACGTATTAACTTGCAATTT
43723346 TGGTGGTTCATCCACATATTATCCGG
65 TGGTGGTTCATCCACATATTATCCGG
* ** *
43723372 CAGCTATTATCTACAATTA-GATTGTGTACTCACAATCATCCGGTAGCGTATTAACTTGCAATTT
1 CAGCTATTATCTACAATTATG-TTGTGTACTCACAACCATCCGACAACGTATTAACTTGCAATTT
* * * *
43723436 TAGTGGTTCATTCACATATTATTCTG
65 TGGTGGTTCATCCACATATTATCCGG
* * * * * * *
43723462 AAGTTATTATCTACAATGATGTTGTGTATTCACAAGCAT-CTAGCAACGTATTAACTTGCAACAT
1 CAGCTATTATCTACAATTATGTTGTGTACTCACAACCATCCGA-CAACGTATTAACTTGCAA-TT
*
43723526 TTGGTGATTCATCCACA
64 TTGGTGGTTCATCCACA
43723543 ACTCGGTGTG
Statistics
Matches: 143, Mismatches: 23, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
89 3 0.02
90 124 0.87
91 16 0.11
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.36
Consensus pattern (90 bp):
CAGCTATTATCTACAATTATGTTGTGTACTCACAACCATCCGACAACGTATTAACTTGCAATTTT
GGTGGTTCATCCACATATTATCCGG
Found at i:43725269 original size:30 final size:30
Alignment explanation
Indices: 43725235--43725297 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
43725225 ACTTAACAAG
43725235 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
* *
43725265 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
43725295 CAA
1 CAA
43725298 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.57, C:0.14, G:0.03, T:0.25
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:43725967 original size:22 final size:21
Alignment explanation
Indices: 43725935--43725995 Score: 63
Period size: 20 Copynumber: 2.9 Consensus size: 21
43725925 GCAACCCGAA
43725935 TATATTATGTTATAA-AAATTAAT
1 TATA-TATGTTATAATAAA--AAT
43725958 TATATATGTTA-AATAAAAAT
1 TATATATGTTATAATAAAAAT
* *
43725978 TATATATATTATATTAAA
1 TATATATGTTATAATAAA
43725996 TCACTCACCT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
20 13 0.38
21 7 0.21
22 10 0.29
23 4 0.12
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (21 bp):
TATATATGTTATAATAAAAAT
Found at i:43725994 original size:25 final size:24
Alignment explanation
Indices: 43725933--43725996 Score: 80
Period size: 25 Copynumber: 2.7 Consensus size: 24
43725923 GTGCAACCCG
43725933 AATATATTATGTT--ATAAAAATT
1 AATATATTATGTTAAATAAAAATT
43725955 AAT-TATATATGTTAAATAAAAATT
1 AATATAT-TATGTTAAATAAAAATT
*
43725979 ATATATATTATATTAAAT
1 A-ATATATTATGTTAAAT
43725997 CACTCACCTA
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
21 3 0.08
22 9 0.25
24 10 0.28
25 11 0.31
26 3 0.08
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (24 bp):
AATATATTATGTTAAATAAAAATT
Found at i:43728081 original size:40 final size:40
Alignment explanation
Indices: 43728037--43728122 Score: 97
Period size: 40 Copynumber: 2.2 Consensus size: 40
43728027 TGAGAAATGG
*
43728037 CACTAAAGATCAAGTA-A-TAGCGGCACTTTCTATAAAACGC
1 CACTAAAGATC-AG-ACATTAGCGGCACTTTCTAGAAAACGC
* * *
43728077 CACTAAAGGTCAGACATTAGCGGCGCTTTTTAGAAAACGC
1 CACTAAAGATCAGACATTAGCGGCACTTTCTAGAAAACGC
43728117 CA-TAAA
1 CACTAAA
43728123 AAAGTTGAGC
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
38 1 0.03
39 7 0.17
40 32 0.80
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.22
Consensus pattern (40 bp):
CACTAAAGATCAGACATTAGCGGCACTTTCTAGAAAACGC
Found at i:43728241 original size:196 final size:193
Alignment explanation
Indices: 43727855--43728409 Score: 462
Period size: 196 Copynumber: 2.9 Consensus size: 193
43727845 CGCAATAGGT
* * ** * * * *
43727855 AAGCAATAGCAGCGCTTTCCCTAAAACGTCGCAAAAGATCAAGCATTAGCGGCGCTTTTGAGAAA
1 AAGCAATAGCGGCACTTTCTATAAAACGCCACTAAAGGTCAAGCATTAGCGGCGCTTTTGAGAAA
* * * * *
43727920 GCGCCGCAAAAAAGTTAAGCAAAACGACGTTTTTCTGTTGAGCTTTACGAACATTAATGGCACTT
66 ACGCCACAAAAAAGTTAAGCAAAACGACCTTTTCCTGTTGAGCTTTACGAACATTAACGGCACTT
* * * *
43727985 TTTAACAAACGCCGTAATATATCGAGCATTAGCGATGCTTATTGAGAAATGGCACTAAAGATC
131 TTTAACAAACGCCGCAAAAGATCGAGCATTAGCGACGCTTATTGAGAAATGGCACTAAAGATC
* *
43728048 AAGTAATAGCGGCACTTTCTATAAAACGCCACTAAAGGTC-AGACATTAGCGGCGCTTTTTAGAA
1 AAGCAATAGCGGCACTTTCTATAAAACGCCACTAAAGGTCAAG-CATTAGCGGCGCTTTTGAGAA
* * * * *
43728112 AACGCCATAAAAAAGTTGAGCAAAACGACCTCGTTTCCTTTTTGCGCTTTACTGGA-ATTAACGG
65 AACGCCACAAAAAAGTTAAGCAAAACGACCT--TTTCC-TGTTGAGCTTTAC-GAACATTAACGG
* * * * * *
43728176 CGA-TTTTTAACAAATGCCGCAAAAGATTGAGCATTAGCGGCGCTTGTTGAGAAATGTCGCTAAA
126 C-ACTTTTTAACAAACGCCGCAAAAGATCGAGCATTAGCGACGCTTATTGAGAAATGGCACTAAA
*
43728240 GATT
190 GATC
* * * * * * * *
43728244 GAGCATTAGCGGCGCTTTTTGTAAAACGTCGCTATAGGTCAAGCATTAGCGGCGC----------
1 AAGCAATAGCGGCACTTTCTATAAAACGCCACTAAAGGTCAAGCATTAGCGGCGCTTTTGAGAAA
* * ** * * * *
43728299 -CG---CAAAAAAGTTAAGCAAAACAACGTTTCTTTTGTTGAGCTTTAGGGACATTAGCGGCGCT
66 ACGCCACAAAAAAGTTAAGCAAAACGACCTTT-TCCTGTTGAGCTTTACGAACATTAACGGCACT
* * * *
43728360 TTTTAACAAACCCCGCAATAGATTGAGCATTAGCGGCGCTTATTG-GAAAT
130 TTTTAACAAACGCCGCAAAAGATCGAGCATTAGCGACGCTTATTGAGAAAT
43728410 CGCTGCAAAG
Statistics
Matches: 297, Mismatches: 55, Indels: 34
0.77 0.14 0.09
Matches are distributed among these distances:
179 8 0.03
180 62 0.21
181 1 0.00
182 20 0.07
185 2 0.01
192 2 0.01
193 77 0.26
195 4 0.01
196 116 0.39
197 5 0.02
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (193 bp):
AAGCAATAGCGGCACTTTCTATAAAACGCCACTAAAGGTCAAGCATTAGCGGCGCTTTTGAGAAA
ACGCCACAAAAAAGTTAAGCAAAACGACCTTTTCCTGTTGAGCTTTACGAACATTAACGGCACTT
TTTAACAAACGCCGCAAAAGATCGAGCATTAGCGACGCTTATTGAGAAATGGCACTAAAGATC
Found at i:43728275 original size:40 final size:40
Alignment explanation
Indices: 43728197--43728298 Score: 134
Period size: 40 Copynumber: 2.5 Consensus size: 40
43728187 AAATGCCGCA
*
43728197 AAAGATTGAGCATTAGCGGCGCTTGTTGAGAAATGTCGCT
1 AAAGATTGAGCATTAGCGGCGCTTGTTGAGAAACGTCGCT
*
43728237 AAAGATTGAGCATTAGCGGCGCTTTTTGTA-AAACGTCGCT
1 AAAGATTGAGCATTAGCGGCGCTTGTTG-AGAAACGTCGCT
* * **
43728277 ATAGGTCAAGCATTAGCGGCGC
1 AAAGATTGAGCATTAGCGGCGC
43728299 CGCAAAAAAG
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
40 54 0.98
41 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.26
Consensus pattern (40 bp):
AAAGATTGAGCATTAGCGGCGCTTGTTGAGAAACGTCGCT
Found at i:43728507 original size:7 final size:7
Alignment explanation
Indices: 43728492--43728529 Score: 67
Period size: 7 Copynumber: 5.4 Consensus size: 7
43728482 GGTTTAGGGA
*
43728492 TTATGGT
1 TTATTGT
43728499 TTATTGT
1 TTATTGT
43728506 TTATTGT
1 TTATTGT
43728513 TTATTGT
1 TTATTGT
43728520 TTATTGT
1 TTATTGT
43728527 TTA
1 TTA
43728530 AGGGTTGGGG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.68
Consensus pattern (7 bp):
TTATTGT
Found at i:43728507 original size:21 final size:21
Alignment explanation
Indices: 43728483--43728529 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
43728473 AGGGATTTGG
43728483 GTTTAGGGATTATGGTTTATT
1 GTTTAGGGATTATGGTTTATT
** * *
43728504 GTTTATTGTTTATTGTTTATT
1 GTTTAGGGATTATGGTTTATT
43728525 GTTTA
1 GTTTA
43728530 AGGGTTGGGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.17, C:0.00, G:0.21, T:0.62
Consensus pattern (21 bp):
GTTTAGGGATTATGGTTTATT
Found at i:43728642 original size:14 final size:14
Alignment explanation
Indices: 43728588--43728646 Score: 55
Period size: 14 Copynumber: 4.0 Consensus size: 14
43728578 AGATGATAGA
43728588 GGTTAGGGGTTTAAG
1 GGTT-GGGGTTTAAG
* *
43728603 GATTATGGGGTTTATG
1 G-GT-TGGGGTTTAAG
**
43728619 GGTTATGGTTTAAG
1 GGTTGGGGTTTAAG
43728633 GGTTGGGGTTTAAG
1 GGTTGGGGTTTAAG
43728647 ATTTGAGGGA
Statistics
Matches: 34, Mismatches: 8, Indels: 5
0.72 0.17 0.11
Matches are distributed among these distances:
14 20 0.59
15 2 0.06
16 11 0.32
17 1 0.03
ACGTcount: A:0.19, C:0.00, G:0.42, T:0.39
Consensus pattern (14 bp):
GGTTGGGGTTTAAG
Found at i:43728720 original size:28 final size:29
Alignment explanation
Indices: 43728696--43728754 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 29
43728686 TGTGGTTTGT
43728696 GGTTTATGGT-TTAAGGGTT-GGGGTTTAA
1 GGTTTA-GGTGTTAAGGGTTAGGGGTTTAA
*
43728724 GGTTTAGGTGTTAAGGGTTAGGGGTTAAA
1 GGTTTAGGTGTTAAGGGTTAGGGGTTTAA
43728753 GG
1 GG
43728755 ATAGGGGTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
27 3 0.11
28 15 0.54
29 10 0.36
ACGTcount: A:0.20, C:0.00, G:0.42, T:0.37
Consensus pattern (29 bp):
GGTTTAGGTGTTAAGGGTTAGGGGTTTAA
Found at i:43728737 original size:14 final size:14
Alignment explanation
Indices: 43728706--43728763 Score: 64
Period size: 14 Copynumber: 4.1 Consensus size: 14
43728696 GGTTTATGGT
43728706 TTAAGGGTT-GGGG
1 TTAAGGGTTAGGGG
* *
43728719 TTTAAGGTTTAGGTG
1 -TTAAGGGTTAGGGG
43728734 TTAAGGGTTAGGGG
1 TTAAGGGTTAGGGG
* *
43728748 TTAAAGGATAGGGG
1 TTAAGGGTTAGGGG
43728762 TT
1 TT
43728764 TATGGTTTAT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
14 34 0.92
15 3 0.08
ACGTcount: A:0.22, C:0.00, G:0.43, T:0.34
Consensus pattern (14 bp):
TTAAGGGTTAGGGG
Found at i:43728745 original size:78 final size:73
Alignment explanation
Indices: 43728582--43728773 Score: 203
Period size: 78 Copynumber: 2.6 Consensus size: 73
43728572 GGGTTTAGAT
* *
43728582 GATAGAGGTTAGGGGTTTAAGGATTATGGGGTTTATGGGTTATGGTTTAAGGGTTGGGGTTTAAG
1 GATATAGGTTAGGGGTTTAAGCATTATGGGGTTTATGGGTTATGGTTTAAGGGTTGGGGTTTAAG
43728647 ATTTGAGG
66 ATTTGAGG
* * *
43728655 GATATAGATTAGGGGTTTAAGCATTATGGTTTGTGGTTTGTGGTTTATGGTTTAAGGGTTGGGGT
1 GATATAGGTTAGGGGTTTAAGCATTAT-G---G-GGTTTATGGGTTATGGTTTAAGGGTTGGGGT
*
43728720 TTAAGGTTT-AGG
61 TTAAGATTTGAGG
* * * *
43728732 TGTTA-AGGGTTAGGGGTTAAAGGA-TA-GGGGTTTATGGTTTAT
1 -GATATA-GGTTAGGGGTTTAAGCATTATGGGGTTTATGGGTTAT
43728774 AGCTCATGTT
Statistics
Matches: 101, Mismatches: 11, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
71 13 0.13
72 1 0.01
73 24 0.24
74 1 0.01
75 1 0.01
77 7 0.07
78 54 0.53
ACGTcount: A:0.21, C:0.01, G:0.39, T:0.40
Consensus pattern (73 bp):
GATATAGGTTAGGGGTTTAAGCATTATGGGGTTTATGGGTTATGGTTTAAGGGTTGGGGTTTAAG
ATTTGAGG
Found at i:43728834 original size:21 final size:21
Alignment explanation
Indices: 43728810--43728893 Score: 64
Period size: 21 Copynumber: 4.0 Consensus size: 21
43728800 AGAGGTTAGG
43728810 GGTTAA-AGGTTTAGGGTTTAT
1 GGTTAAGA-GTTTAGGGTTTAT
* *
43728831 GGTTCAAG-GGTTAGGGTTTAA
1 GGTT-AAGAGTTTAGGGTTTAT
* * *
43728852 GGTTTAAGTGTTAAGGGTTAAT
1 GG-TTAAGAGTTTAGGGTTTAT
* *
43728874 GGATATGAGTTTAGGGTTTA
1 GGTTAAGAGTTTAGGGTTTA
43728894 AGATTTAAGG
Statistics
Matches: 48, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
21 33 0.69
22 15 0.31
ACGTcount: A:0.25, C:0.01, G:0.35, T:0.39
Consensus pattern (21 bp):
GGTTAAGAGTTTAGGGTTTAT
Found at i:43728869 original size:43 final size:43
Alignment explanation
Indices: 43728812--43728908 Score: 106
Period size: 43 Copynumber: 2.3 Consensus size: 43
43728802 AGGTTAGGGG
* * * * *
43728812 TTAAAGGTTTAGGGTTTATGGTTCAAG-GGTTAGGGTTTAAGGT
1 TTAAGGGTTAAGGGTTAATGGAT-AAGAGGTTAGGGTTTAAGAT
* * *
43728855 TTAAGTGTTAAGGGTTAATGGATATGAGTTTAGGGTTTAAGAT
1 TTAAGGGTTAAGGGTTAATGGATAAGAGGTTAGGGTTTAAGAT
43728898 TTAAGGGTTAA
1 TTAAGGGTTAA
43728909 AGTCTAGGGT
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
42 2 0.05
43 42 0.95
ACGTcount: A:0.28, C:0.01, G:0.32, T:0.39
Consensus pattern (43 bp):
TTAAGGGTTAAGGGTTAATGGATAAGAGGTTAGGGTTTAAGAT
Found at i:43729371 original size:20 final size:20
Alignment explanation
Indices: 43729348--43729386 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
43729338 CACCCAGCCC
43729348 CTAATTCCCTTTCCAAATCA
1 CTAATTCCCTTTCCAAATCA
43729368 CTAATTCCCTTTCCAAATC
1 CTAATTCCCTTTCCAAATC
43729387 CCTTCCAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.36, G:0.00, T:0.36
Consensus pattern (20 bp):
CTAATTCCCTTTCCAAATCA
Found at i:43731880 original size:3 final size:3
Alignment explanation
Indices: 43731874--43731918 Score: 54
Period size: 3 Copynumber: 14.7 Consensus size: 3
43731864 GATAAGTAGC
* * *
43731874 AAT AAT ATT AGT AAT AAT AAT AAT AAT AGT AAT AAT AAAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AA
43731919 AAGATGATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
3 33 0.92
4 3 0.08
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:43731911 original size:15 final size:15
Alignment explanation
Indices: 43731855--43731917 Score: 54
Period size: 15 Copynumber: 3.9 Consensus size: 15
43731845 AGCTATTATA
43731855 TAATAATATGATAAGTAG
1 TAATAATA--ATAA-TAG
* * * *
43731873 CAATAATATTAGTAA
1 TAATAATAATAATAG
43731888 TAATAATAATAATAG
1 TAATAATAATAATAG
43731903 TAATAATAAATAATA
1 TAATAAT-AATAATA
43731918 AAAGATGATA
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
15 20 0.56
16 9 0.25
18 7 0.19
ACGTcount: A:0.57, C:0.02, G:0.08, T:0.33
Consensus pattern (15 bp):
TAATAATAATAATAG
Found at i:43733770 original size:123 final size:121
Alignment explanation
Indices: 43733565--43733791 Score: 400
Period size: 123 Copynumber: 1.9 Consensus size: 121
43733555 CTTTGAAGAA
* *
43733565 TTAATATGTAACCTATATTAGTATGATATATAACCTACATTTCAAATTCAATACTAATAAGTTTT
1 TTAATATATAACCTATATTAGTATGATATATAACCTACATTTCAAAGTCAATACTAATAAGTTTT
*
43733630 TAAATTTTAAAAGTAATTATAATTATTATATTTTTAAATAACTTAAAACCTATATTT
66 TAAATTTTAAAAATAATTATAATTATTATA-TTTTAAATAACTTAAAACCTATATTT
*
43733687 TTAATATATAACCTATATTAGTATGGATATATAACCTACATTTCAAAGTCATTACTAATAAGTTT
1 TTAATATATAACCTATATTAGTAT-GATATATAACCTACATTTCAAAGTCAATACTAATAAGTTT
43733752 TTAAATTTTAAAAATAATTATAATTATTATATTTTAAATA
65 TTAAATTTTAAAAATAATTATAATTATTATATTTTAAATA
43733792 TTATATCACT
Statistics
Matches: 100, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
122 32 0.32
123 68 0.68
ACGTcount: A:0.43, C:0.08, G:0.04, T:0.44
Consensus pattern (121 bp):
TTAATATATAACCTATATTAGTATGATATATAACCTACATTTCAAAGTCAATACTAATAAGTTTT
TAAATTTTAAAAATAATTATAATTATTATATTTTAAATAACTTAAAACCTATATTT
Found at i:43733869 original size:9 final size:9
Alignment explanation
Indices: 43733855--43733926 Score: 56
Period size: 9 Copynumber: 8.0 Consensus size: 9
43733845 ACTAATTTCC
*
43733855 ACATAACAT
1 ACATAACTT
*
43733864 ACATAATTT
1 ACATAACTT
*
43733873 ACATAA-AT
1 ACATAACTT
* * *
43733881 ATATATCAT
1 ACATAACTT
*
43733890 ATCAAAACTT
1 A-CATAACTT
43733900 ACATAACTT
1 ACATAACTT
*
43733909 ACATAATTT
1 ACATAACTT
43733918 ACATAACTT
1 ACATAACTT
43733927 TAAAGAATTG
Statistics
Matches: 49, Mismatches: 12, Indels: 4
0.75 0.18 0.06
Matches are distributed among these distances:
8 5 0.10
9 39 0.80
10 5 0.10
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.35
Consensus pattern (9 bp):
ACATAACTT
Found at i:43733959 original size:9 final size:9
Alignment explanation
Indices: 43733945--43734113 Score: 74
Period size: 9 Copynumber: 19.7 Consensus size: 9
43733935 TGAAAAAAAA
43733945 AACTTACAT
1 AACTTACAT
43733954 AACTTACAT
1 AACTTACAT
**
43733963 ATTTTACAT
1 AACTTACAT
* *
43733972 AA-ATATAT
1 AACTTACAT
* * *
43733980 ATCATAAATAT
1 AACTTACA--T
43733991 AACTTACAT
1 AACTTACAT
*
43734000 AACATACAT
1 AACTTACAT
*
43734009 AA---ATAT
1 AACTTACAT
43734015 AACTTACAT
1 AACTTACAT
43734024 AACTTACAT
1 AACTTACAT
43734033 AA--TACAT
1 AACTTACAT
* *
43734040 AA-ATATAT
1 AACTTACAT
* *
43734048 ATCATATCAT
1 AACTTA-CAT
43734058 AACTTACAT
1 AACTTACAT
**
43734067 AACTTATTT
1 AACTTACAT
43734076 ATACTTACAT
1 A-ACTTACAT
43734086 AA--TACAT
1 AACTTACAT
*
43734093 AA---ATAT
1 AACTTACAT
43734099 AACTTACAT
1 AACTTACAT
43734108 AACTTA
1 AACTTA
43734114 TTTATACTTA
Statistics
Matches: 123, Mismatches: 24, Indels: 26
0.71 0.14 0.15
Matches are distributed among these distances:
6 10 0.08
7 14 0.11
8 10 0.08
9 70 0.57
10 13 0.11
11 6 0.05
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (9 bp):
AACTTACAT
Found at i:43734009 original size:24 final size:24
Alignment explanation
Indices: 43733982--43734034 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
43733972 AAATATATAT
43733982 CATAAATATAACTTACATAACATA
1 CATAAATATAACTTACATAACATA
*
43734006 CATAAATATAACTTACATAACTTA
1 CATAAATATAACTTACATAACATA
43734030 CATAA
1 CATAA
43734035 TACATAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.53, C:0.17, G:0.00, T:0.30
Consensus pattern (24 bp):
CATAAATATAACTTACATAACATA
Found at i:43734083 original size:19 final size:19
Alignment explanation
Indices: 43734059--43734123 Score: 76
Period size: 19 Copynumber: 3.3 Consensus size: 19
43734049 TCATATCATA
43734059 ACTTACATAACTTATTTAT
1 ACTTACATAACTTATTTAT
* **
43734078 ACTTACATAATACATAAATAT
1 ACTTACAT-A-ACTTATTTAT
43734099 AACTTACATAACTTATTTAT
1 -ACTTACATAACTTATTTAT
43734119 ACTTA
1 ACTTA
43734124 TAAATAAACA
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
19 13 0.35
20 8 0.22
21 8 0.22
22 8 0.22
ACGTcount: A:0.43, C:0.15, G:0.00, T:0.42
Consensus pattern (19 bp):
ACTTACATAACTTATTTAT
Found at i:43734113 original size:41 final size:42
Alignment explanation
Indices: 43733992--43734123 Score: 162
Period size: 41 Copynumber: 3.1 Consensus size: 42
43733982 CATAAATATA
* *
43733992 ACTTACATAACATACATAAATATAACTTACATAACTTACATAAT
1 ACTTACAT-ACATACATAAATATAACTTACATAACTTA-TTTAT
* * *
43734036 ACATAAATATATATCAT--ATCATAACTTACATAACTTATTTAT
1 ACTTACATACATA-CATAAAT-ATAACTTACATAACTTATTTAT
43734078 ACTTACATA-ATACATAAATATAACTTACATAACTTATTTAT
1 ACTTACATACATACATAAATATAACTTACATAACTTATTTAT
43734119 ACTTA
1 ACTTA
43734124 TAAATAAACA
Statistics
Matches: 77, Mismatches: 7, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
40 3 0.04
41 30 0.39
42 14 0.18
43 21 0.27
44 9 0.12
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.37
Consensus pattern (42 bp):
ACTTACATACATACATAAATATAACTTACATAACTTATTTAT
Found at i:43742235 original size:41 final size:43
Alignment explanation
Indices: 43742105--43742245 Score: 155
Period size: 44 Copynumber: 3.3 Consensus size: 43
43742095 GAACGGTACT
* * *
43742105 TTTAGCGGCGTTTGAGA-ATGAAGCGTCGCTAAAGGTCATGTTA
1 TTTAGCGGCGTTTGTGATA-AAAGCGCCGCTAAAGGTCATGTTA
*
43742148 TTTAACGGCGTTTGGTGATAAAAGCGCCGCTAAAGGTCATGTTA
1 TTTAGCGGCGTTT-GTGATAAAAGCGCCGCTAAAGGTCATGTTA
* * * *
43742192 TTTAGCGGCGCTTT-T-TTTAAA-CGCTGCTAAAGGTCATGATA
1 TTTAGCGGCG-TTTGTGATAAAAGCGCCGCTAAAGGTCATGTTA
43742233 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
43742246 ATGTGGACAA
Statistics
Matches: 86, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
40 3 0.03
41 28 0.33
42 4 0.05
43 13 0.15
44 34 0.40
45 4 0.05
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTA
Found at i:43744071 original size:33 final size:33
Alignment explanation
Indices: 43743999--43744073 Score: 84
Period size: 33 Copynumber: 2.3 Consensus size: 33
43743989 TCAAATCATG
*
43743999 TTTT-ATTTTTATGTAGTCAATTTGTTTTATTC
1 TTTTAATTTTTATGTAGTCAATTTCTTTTATTC
* *
43744031 TTCTAATTTTTATGTAGGT-AATATTCTTTTCTT-
1 TTTTAATTTTTATGTA-GTCAAT-TTCTTTTATTC
43744064 TTTTAATTTT
1 TTTTAATTTT
43744074 AATTTTCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
32 3 0.08
33 23 0.64
34 10 0.28
ACGTcount: A:0.20, C:0.07, G:0.08, T:0.65
Consensus pattern (33 bp):
TTTTAATTTTTATGTAGTCAATTTCTTTTATTC
Found at i:43744927 original size:18 final size:17
Alignment explanation
Indices: 43744885--43744927 Score: 50
Period size: 19 Copynumber: 2.4 Consensus size: 17
43744875 GCCTGATTCA
43744885 ATGTATTCTTCAATTTT
1 ATGTATTCTTCAATTTT
* *
43744902 ATAATATTCTTTCATTTTT
1 AT-GTATTC-TTCAATTTT
43744921 ATGTATT
1 ATGTATT
43744928 ATCATAGACG
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
17 2 0.10
18 9 0.43
19 10 0.48
ACGTcount: A:0.26, C:0.09, G:0.05, T:0.60
Consensus pattern (17 bp):
ATGTATTCTTCAATTTT
Found at i:43752009 original size:16 final size:17
Alignment explanation
Indices: 43751990--43752023 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
43751980 TATTTGTTTT
*
43751990 ATTTTAAATAA-ATAAA
1 ATTTTAAAAAAGATAAA
43752006 ATTTTAAAAAAGATAAA
1 ATTTTAAAAAAGATAAA
43752023 A
1 A
43752024 GACTCTTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (17 bp):
ATTTTAAAAAAGATAAA
Found at i:43752138 original size:76 final size:76
Alignment explanation
Indices: 43752058--43752206 Score: 280
Period size: 76 Copynumber: 2.0 Consensus size: 76
43752048 AAATGCTTTT
* *
43752058 AAAAATATAAATATAAATTTTAAAATTCAATATTATCTAAATTGGATTGGTTAGCGGTTCACCAA
1 AAAAATATAAATATAAATTTCAAAATTCAATATTATCTAAATTGGATTGGTTAACGGTTCACCAA
43752123 TTTTTTTAATC
66 TTTTTTTAATC
43752134 AAAAATATAAATATAAATTTCAAAATTCAATATTATCTAAATTGGATTGGTTAACGGTTCACCAA
1 AAAAATATAAATATAAATTTCAAAATTCAATATTATCTAAATTGGATTGGTTAACGGTTCACCAA
43752199 TTTTTTTA
66 TTTTTTTA
43752207 TCTCTCATTG
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 71 1.00
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (76 bp):
AAAAATATAAATATAAATTTCAAAATTCAATATTATCTAAATTGGATTGGTTAACGGTTCACCAA
TTTTTTTAATC
Found at i:43752308 original size:28 final size:26
Alignment explanation
Indices: 43752276--43752330 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
43752266 ATAACATTGA
*
43752276 ATTTTGAAATTTTTTATATTTTTAAAAC
1 ATTTTGAAA-TATTT-TATTTTTAAAAC
**
43752304 ATTTTTTAATATTTTATTTTTAAAAC
1 ATTTTGAAATATTTTATTTTTAAAAC
43752330 A
1 A
43752331 AATCATAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 13 0.54
27 4 0.17
28 7 0.29
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.58
Consensus pattern (26 bp):
ATTTTGAAATATTTTATTTTTAAAAC
Found at i:43752339 original size:26 final size:25
Alignment explanation
Indices: 43752287--43752344 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
43752277 TTTTGAAATT
** **
43752287 TTTTATATTTTTAAAACATTTTTTAA
1 TTTT-TATTTTTAAAACAAATCATAA
43752313 TATTTTATTTTTAAAACAAATCATAA
1 T-TTTTATTTTTAAAACAAATCATAA
43752339 TTTTTA
1 TTTTTA
43752345 AAATTTTTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
25 5 0.19
26 19 0.70
27 3 0.11
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (25 bp):
TTTTTATTTTTAAAACAAATCATAA
Found at i:43753740 original size:31 final size:32
Alignment explanation
Indices: 43753705--43753766 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 32
43753695 CTATGTTATA
**
43753705 ATATTA-ATAATTTTAATAATTAAGTA-AATAT
1 ATATTATATAATAATAA-AATTAAGTATAATAT
43753736 ATATTATATAATAATAAAATTAAGTATAATA
1 ATATTATATAATAATAAAATTAAGTATAATA
43753767 AAACAAAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
31 15 0.56
32 12 0.44
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (32 bp):
ATATTATATAATAATAAAATTAAGTATAATAT
Found at i:43756512 original size:41 final size:40
Alignment explanation
Indices: 43756467--43756593 Score: 132
Period size: 41 Copynumber: 3.1 Consensus size: 40
43756457 TGTTAGAGTT
* *
43756467 TGAATTGAGTTAAACAGAAAAGAATCGATTTAAAACAATAA
1 TGAATTGA-TTAAACAGAAAAGAATTGATTCAAAACAATAA
*
43756508 TGAATTGATTCAAACA-ACAAAGAATTGAGTCAAAACAAT-A
1 TGAATTGATT-AAACAGA-AAAGAATTGATTCAAAACAATAA
* * * *
43756548 TACAATCGATTTAAAAAGTAAAGAATTGATTCAAAACAATAA
1 T-GAATTGA-TTAAACAGAAAAGAATTGATTCAAAACAATAA
43756590 TGAA
1 TGAA
43756594 ACTAAGATTG
Statistics
Matches: 71, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
40 5 0.07
41 62 0.87
42 4 0.06
ACGTcount: A:0.54, C:0.09, G:0.13, T:0.24
Consensus pattern (40 bp):
TGAATTGATTAAACAGAAAAGAATTGATTCAAAACAATAA
Found at i:43756524 original size:20 final size:21
Alignment explanation
Indices: 43756488--43756593 Score: 92
Period size: 21 Copynumber: 5.1 Consensus size: 21
43756478 AAACAGAAAA
* *
43756488 GAATCGATTTAAAACAATAAT
1 GAATTGATTCAAAACAATAAT
* *
43756509 GAATTGATTC-AAACAACAAA
1 GAATTGATTCAAAACAATAAT
*
43756529 GAATTGAGTCAAAACAAT-AT
1 GAATTGATTCAAAACAATAAT
* * * * *
43756549 ACAATCGATTTAAAA-AGTAAA
1 -GAATTGATTCAAAACAATAAT
43756570 GAATTGATTCAAAACAATAAT
1 GAATTGATTCAAAACAATAAT
43756591 GAA
1 GAA
43756594 ACTAAGATTG
Statistics
Matches: 63, Mismatches: 18, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
20 31 0.49
21 32 0.51
ACGTcount: A:0.54, C:0.10, G:0.11, T:0.25
Consensus pattern (21 bp):
GAATTGATTCAAAACAATAAT
Found at i:43756536 original size:61 final size:61
Alignment explanation
Indices: 43756468--43756582 Score: 153
Period size: 61 Copynumber: 1.9 Consensus size: 61
43756458 GTTAGAGTTT
* * *
43756468 GAATTGAGT-TAAACAGA-AAAGAATCGATTTAAAACAATAATGAATTGATTCAAACAACAAA
1 GAATTGAGTCAAAACA-ATAAACAATCGATTTAAAA-AATAAAGAATTGATTCAAACAACAAA
* *
43756529 GAATTGAGTCAAAACAATATACAATCGATTTAAAAAGTAAAGAATTGATTCAAA
1 GAATTGAGTCAAAACAATAAACAATCGATTTAAAAAATAAAGAATTGATTCAAA
43756583 ACAATAATGA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
61 27 0.57
62 20 0.43
ACGTcount: A:0.53, C:0.10, G:0.13, T:0.24
Consensus pattern (61 bp):
GAATTGAGTCAAAACAATAAACAATCGATTTAAAAAATAAAGAATTGATTCAAACAACAAA
Found at i:43763842 original size:17 final size:18
Alignment explanation
Indices: 43763822--43763864 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
43763812 TGTTTAGTAA
43763822 TGTTTTTA-TCTCAAAAG
1 TGTTTTTAGTCTCAAAAG
43763839 TGTTTTTAGTCTCAAAAG
1 TGTTTTTAGTCTCAAAAG
*
43763857 TGCTTTTA
1 TGTTTTTA
43763865 AGAAATAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 8 0.33
18 16 0.67
ACGTcount: A:0.26, C:0.12, G:0.14, T:0.49
Consensus pattern (18 bp):
TGTTTTTAGTCTCAAAAG
Found at i:43776068 original size:32 final size:32
Alignment explanation
Indices: 43776027--43776094 Score: 129
Period size: 32 Copynumber: 2.2 Consensus size: 32
43776017 TTTTTGAACT
43776027 TAATTGGTACTCAAACATGGAAATCATAAGCC
1 TAATTGGTACTCAAACATGGAAATCATAAGCC
43776059 TAATTGGTACTCAAACATGGAAATCATAAGCC
1 TAATTGGTACTCAAACATGGAAATCATAAGCC
43776091 -AATT
1 TAATT
43776095 TGTTGCTACT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 4 0.11
32 32 0.89
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.26
Consensus pattern (32 bp):
TAATTGGTACTCAAACATGGAAATCATAAGCC
Found at i:43785849 original size:38 final size:38
Alignment explanation
Indices: 43785780--43785905 Score: 173
Period size: 38 Copynumber: 3.3 Consensus size: 38
43785770 TATTACAGAT
* * *
43785780 TATAACAAGATCTA-CCATTTGTTATAGATTCTCGGGTAA
1 TATAATAAGATCTAGCC--TTGTTGTAAATTCTCGGGTAA
*
43785819 TATAATGAGATCTAGCCTTGTTGTAAATTCTCGGGTAA
1 TATAATAAGATCTAGCCTTGTTGTAAATTCTCGGGTAA
* *
43785857 TATAATAAGATCTAGCCTAGTTGTAAATTGTCGGGTAA
1 TATAATAAGATCTAGCCTTGTTGTAAATTCTCGGGTAA
43785895 TATAATAAGAT
1 TATAATAAGAT
43785906 TCAAACTTTT
Statistics
Matches: 79, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
38 65 0.82
39 12 0.15
40 2 0.03
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36
Consensus pattern (38 bp):
TATAATAAGATCTAGCCTTGTTGTAAATTCTCGGGTAA
Found at i:43786366 original size:19 final size:20
Alignment explanation
Indices: 43786338--43786377 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
43786328 GTGACCCCTG
*
43786338 TTTTGCAAAA-TTTCCAGTT
1 TTTTGAAAAAGTTTCCAGTT
43786357 TTTTGAAAAAGTTTCCAGTT
1 TTTTGAAAAAGTTTCCAGTT
43786377 T
1 T
43786378 AGTCCTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.47
Consensus pattern (20 bp):
TTTTGAAAAAGTTTCCAGTT
Found at i:43788977 original size:36 final size:36
Alignment explanation
Indices: 43788937--43789051 Score: 124
Period size: 36 Copynumber: 3.0 Consensus size: 36
43788927 CCGACCCATA
43788937 TTTGATTAAAAATAAAATATATATTTAATATATAAT
1 TTTGATTAAAAATAAAATATATATTTAATATATAAT
* * *
43788973 TTTGATTAAAAGTCCAAAATATATATATTTAATAAAAATTAT
1 TTTGATTAAAAAT---AAA-ATATATATTTAAT--ATATAAT
*
43789015 ATTTGATTAAAAATAAAA-AAATATTTAATATATAAT
1 -TTTGATTAAAAATAAAATATATATTTAATATATAAT
43789051 T
1 T
43789052 CAGGCCGGGC
Statistics
Matches: 65, Mismatches: 7, Indels: 15
0.75 0.08 0.17
Matches are distributed among these distances:
35 1 0.02
36 17 0.26
38 10 0.15
39 4 0.06
40 16 0.25
42 5 0.08
43 12 0.18
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.42
Consensus pattern (36 bp):
TTTGATTAAAAATAAAATATATATTTAATATATAAT
Found at i:43789017 original size:16 final size:17
Alignment explanation
Indices: 43788996--43789028 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
43788986 CCAAAATATA
43788996 TATATTT-AATAAAAAT
1 TATATTTGAATAAAAAT
*
43789012 TATATTTGATTAAAAAT
1 TATATTTGAATAAAAAT
43789029 AAAAAAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (17 bp):
TATATTTGAATAAAAAT
Found at i:43806508 original size:88 final size:87
Alignment explanation
Indices: 43806391--43806601 Score: 237
Period size: 88 Copynumber: 2.4 Consensus size: 87
43806381 AGTCCTTGTC
* *
43806391 TTTTCACTCAATTTGGTATTTAAATTTTCAAAATGCATAAAAAATGC-CTTCAAACTTTTTCAAA
1 TTTTCACTCAA-TTGGTATTTAAACTTTCAAAATGCATAAAAAAGGCTCTT-AAACTTTTTCAAA
* *
43806455 GAAAAGCAATTTAGCTCCTA-TCTT
64 -AAAAGCAATTAAGCCCCTACTCTT
* * * *
43806479 TTTTGCACTCAACTGGTATTTAAACTTTCAAAATGTATATAAAGGGCTCTTAAACTTTTTCAAAA
1 TTTT-CACTCAATTGGTATTTAAACTTTCAAAATGCATAAAAAAGGCTCTTAAACTTTTTCAAAA
* *
43806544 TAAGCAATTAAGCCCCTACTTTT
65 AAAGCAATTAAGCCCCTACTCTT
* * *
43806567 TTTTACACTCAATTGGATACTTGAACTGTCAAAAT
1 TTTT-CACTCAATTGG-TATTTAAACTTTCAAAAT
43806602 ACATCAGAAA
Statistics
Matches: 104, Mismatches: 15, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
87 16 0.15
88 63 0.61
89 25 0.24
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.38
Consensus pattern (87 bp):
TTTTCACTCAATTGGTATTTAAACTTTCAAAATGCATAAAAAAGGCTCTTAAACTTTTTCAAAAA
AAGCAATTAAGCCCCTACTCTT
Found at i:43807073 original size:13 final size:13
Alignment explanation
Indices: 43807057--43807082 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
43807047 ACTTTAACAA
43807057 TTAATGGTTAAAG
1 TTAATGGTTAAAG
43807070 TTAATGGTTAAAG
1 TTAATGGTTAAAG
43807083 GACATTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.38
Consensus pattern (13 bp):
TTAATGGTTAAAG
Found at i:43807149 original size:19 final size:19
Alignment explanation
Indices: 43807117--43807181 Score: 51
Period size: 19 Copynumber: 3.3 Consensus size: 19
43807107 TTTTTTTATG
* *
43807117 ATTTTTATACAATTTTACA
1 ATTTTTTTATAATTTTACA
* *
43807136 ATTTTTTTATAA-TTTCCT
1 ATTTTTTTATAATTTTACA
*
43807154 ATTGTTTTTATAATATTTTCAA
1 ATT-TTTTTATAAT-TTTAC-A
43807176 ATTTTT
1 ATTTTT
43807182 ATATTCTTTA
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
18 7 0.19
19 19 0.53
21 7 0.19
22 3 0.08
ACGTcount: A:0.29, C:0.08, G:0.02, T:0.62
Consensus pattern (19 bp):
ATTTTTTTATAATTTTACA
Found at i:43807204 original size:22 final size:22
Alignment explanation
Indices: 43807176--43807246 Score: 99
Period size: 24 Copynumber: 3.2 Consensus size: 22
43807166 ATATTTTCAA
43807176 ATTTTTATATTCTTTATATAAT
1 ATTTTTATATTCTTTATATAAT
*
43807198 ATTTTTATATTCTTTATAAAGAAT
1 ATTTTTATATTCTTTAT--ATAAT
*
43807222 ATTTTTATATTCTTTAT-TAAA
1 ATTTTTATATTCTTTATATAAT
43807243 ATTT
1 ATTT
43807247 AATAATTTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
21 6 0.14
22 17 0.39
24 21 0.48
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.61
Consensus pattern (22 bp):
ATTTTTATATTCTTTATATAAT
Found at i:43807665 original size:13 final size:13
Alignment explanation
Indices: 43807647--43807712 Score: 64
Period size: 13 Copynumber: 5.1 Consensus size: 13
43807637 AGTTCTTCAT
43807647 TACTTTTGAAAAG
1 TACTTTTGAAAAG
43807660 TACTTTTGAAAAG
1 TACTTTTGAAAAG
* *
43807673 TGC-TGTGAAAAAG
1 TACTTTTG-AAAAG
43807686 TACTTTT-AAGAAG
1 TACTTTTGAA-AAG
**
43807699 TGTTTTTGAAAAG
1 TACTTTTGAAAAG
43807712 T
1 T
43807713 TTGGTTTAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
12 5 0.12
13 34 0.79
14 4 0.09
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (13 bp):
TACTTTTGAAAAG
Found at i:43807710 original size:26 final size:25
Alignment explanation
Indices: 43807650--43807712 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 25
43807640 TCTTCATTAC
43807650 TTTTGAAAAGTACTTTTGAAAAGTG
1 TTTTGAAAAGTACTTTTGAAAAGTG
* *
43807675 CTGTGAAAAAGTACTTTT-AAGAAGTG
1 TTTTG-AAAAGTACTTTTGAA-AAGTG
43807701 TTTTTGAAAAGT
1 -TTTTGAAAAGT
43807713 TTGGTTTAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
25 5 0.16
26 23 0.74
27 3 0.10
ACGTcount: A:0.37, C:0.05, G:0.21, T:0.38
Consensus pattern (25 bp):
TTTTGAAAAGTACTTTTGAAAAGTG
Found at i:43813964 original size:20 final size:21
Alignment explanation
Indices: 43813923--43813971 Score: 66
Period size: 20 Copynumber: 2.3 Consensus size: 21
43813913 AAAACTTCAT
43813923 AAAAATTATAAAGATATTTTAA
1 AAAAATTATAAAGATA-TTTAA
43813945 AAAAATATATAAA-ATA-TTAA
1 AAAAAT-TATAAAGATATTTAA
43813965 AAAAATT
1 AAAAATT
43813972 TAATAATTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
19 1 0.04
20 10 0.38
22 9 0.35
23 6 0.23
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (21 bp):
AAAAATTATAAAGATATTTAA
Found at i:43817365 original size:414 final size:415
Alignment explanation
Indices: 43814334--43829929 Score: 21277
Period size: 415 Copynumber: 37.8 Consensus size: 415
43814324 AGAGAGGAAT
* *
43814334 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCACGTATCTCTAAGGACCCTGTTGAGTA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * * *
43814399 GACAATTGTTGCTCCCTTCTTCA-C---C-T-A-C---GCTACGTACCTACTTTCCCTTTTGTCC
66 GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
*
43814454 TTAATGCTCCTTTTCATTCTTTTTCATTTTATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * * *
43814519 ATTATGCGTTTGGC-TTTTTT-TTTAGTAAGGGGAGGAAGAAGTCTAAGCGCAGTGTTCAAGTTT
196 ATTGTGTGTTTGGCGTTTTTTGTTT-GTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* *
43814582 ATAACAAATAACAAAGAAAACAGAAATGATACTTGAGAAGACTTTATTCATTAAGCCATTCTTTA
260 ATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
* * *
43814647 ATGCAAAGGCGTTGTACATATTATATAAGAGTGTTGACTAATAGACTAACTGAACCTTAACGGCT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
* *
43814712 CACTACATATATAGAGGACTATGATA
390 AACTACTTATATAGAGGACTATGATA
** * *
43814738 CAATTTGGAAATCAAAAGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACTCTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* *
43814803 GACAATTGCTGCTTCCTTCTTCACCTTTCTTCACCTATGCTACGTGCTTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * *
43814868 ATAATGCTCCCTTTCATTCTTTTTCATTTCATATCAGATATTA-ATGTTTTTGACCCCTAGTGAT
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGA-GTTTTTGAACCCTAGTGAT
* * *
43814932 AATTATGTGTTTGGCGTTTTTTCTTTGTAAGGGGAGGAAGAAGTCTAAGCGCAGTGTTGAAGTTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* * * *
43814997 ATAACAAATATTAAAAAAAAAATAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTT
260 ATAACAAATA--ACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTT
* * * * * *
43815062 TAATGCAAAGGCACTATACATATTATATAGAAGTGTTGACTAACAGACTAACTCAACCATAACGA
323 TAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGG
43815127 CTAACTACTTATATAGAGGACTATGATA
388 CTAACTACTTATATAGAGGACTATGATA
* *
43815155 CAATTTGGAAA-CTGTATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCTTGTTGAGC
1 CAATTTGGAAATC-GCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGC
43815219 AGACAATTGCTGCTCCCTTCTTC-CCATTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGT
65 AGACAATTGCTGCTCCCTTCTTCACC-TTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGT
* *
43815283 CCTTAATGCTCATTTTCATTCTTTTTCCTTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGA
129 CCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGA
* * *
43815348 TAATTGTGTGTTTGGCGTTTTTTGTTAGTAAGGGGAGGAAGAAGTCTAAGCCTAATGTTGAAGTT
194 TAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTT
* *
43815413 TATAACAAATAACAAAAAAAAAAAACAAAAATGATACTTAAGAAGACTTTATTCATTAAGCCATT
259 TATAACAAATAAC----AAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATT
* * * * * *
43815478 CATTAATGCGAAGGCGCTGTAGATATTATATAGGAGTGTTGACGAACAGATTAACTAAACCTTAA
320 CTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAA
* * *
43815543 CGGCTACCTACTTATACAGAGGACCATGATA
385 CGGCTAACTACTTATATAGAGGACTATGATA
* * * * *
43815574 CAATATGAAAATCGCATGAAATATTTACTTGAAAAGGCAACTATCTCTAAGGACCGTATTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * *
43815639 GAGAATTGATG-------C-TC-CC-TTCTTCACCTATGCTACGTGCCTTCTTTCTTTTTTGTCC
66 GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* *
43815694 TTTATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAAACCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * * *
43815759 ATTTTCTGTTTGGC-TTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGATGCTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* * *
43815823 TAACAAATAACAATGAAAACATAAATGATACTTAAGAATACTTTATTCATTAAGCCATTCTTTAT
261 TAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
* * * * * * * *
43815888 TTCACAGGCACTGTACATATTATATAAGAGTGTTGACTAATAGACTAACTTAACCTTAAAGCCTA
326 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTA
43815953 ACTACTTATATAGAGGACTATGATA
391 ACTACTTATATAGAGGACTATGATA
* *
43815978 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGAATCTCTAAGGACCTTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* *
43816043 GACAATTGCTG-------C-T-GCC-TTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTTTCC
66 GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * *
43816098 TTAATTCTCCTTTTCATTCTTTTTCATTTCATATCAGATATCAGAGTTTTTGACCCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * * * * * *
43816163 ATTGTGTGTTTTGCGTGTTTTCTTTGTAAAGGGAGGAAGAATTCTAAGCGCAATGTTGAAGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* *
43816228 TAACAAATAAAAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
261 TAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
* * * * * * *
43816293 TGCAAAGGCACTGTATATATTATATCGGAGTGTTGACTAACAGAATAAATAAACCTTAACAGCTA
326 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTA
43816358 ACTACTTATATAGAGGACTATGATA
391 ACTACTTATATAGAGGACTATGATA
* * *
43816383 CAATTTGGAAACCGTATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCTTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* ** * * *
43816448 GACAATTGTTGCTCCCTTCTTTGCATTTCTTCACCTATGCTACGTACCTTCTTTCCTTTTTGTCG
66 GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* *
43816513 TTAATGCTCATTTTCATTCTTTTTCATTTCATATTAGATATTAGAGTTTTTGAACCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * * * *
43816578 ATTGTGTGTTTGGTGTTTTTTGTTTGTAAGGGGAAGAAGAAGTCTAAGTGCAGTGTTGATGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* *
43816643 TAACAAATAACAAAAAAAAACATAAATGATACTTAAGAATACTTTATTCATTAAGCCATTCTTTA
261 TAACAAATAAC-AAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
* * *
43816708 ATGCAAAGGCGTTGTACATATTATATAGGAGTGTTGACTAATAGACTAACTTAACCTTAACGGCT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
*
43816773 AACTACTTAAATAGAGGACTATGATA
390 AACTACTTATATAGAGGACTATGATA
* *
43816799 CAATATGGAAA-CTGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGT
1 CAATTTGGAAATC-GCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGC
* *
43816863 AGATC-ATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTATTTCCTTTTTGT
65 AGA-CAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGT
*
43816927 CCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATCTTAGAGTTTTTGAACCCTAGTGA
129 CCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGA
** * * *
43816992 TAATTGTGTGTTTTACGTTTTTTATTAGTAAAGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTT
194 TAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTT
* * * * * *
43817057 TATAAAAAATAACAAAGAAAAGAGAAATGAAACATATGAAGACTTTATTCATTAAGCCATTCTTT
259 TATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTT
* * * *
43817122 AATGCAAAGGCGTTGTACATATTGTATAGGAGTGTTGACTAATAGACTAACTTAACCTTAACGGC
324 AATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGC
* * *
43817187 TCATTACTTATAAAGAGGACTATGATA
389 TAACTACTTATATAGAGGACTATGATA
43817214 CAATTTGGAAATCGCAT-AAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAG-A
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * * * *
43817277 GGACAATTGTTGATCCCTTCTTCACCCTTCTTTACCTATGCTATGTGCCTTCTTTCCTTTTTGTC
66 -GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
* * *
43817342 CTTAATGCTAAC-TTTCATTCTTTTTCATTTTATATCAGATATTAGAGTTTTTGAA-CCTAGTAA
130 CTTAATGCT-CCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGA
* * * * * *
43817405 TAATTGTGTATTTAGCGTTTTTTATTTGTAAGGAGAGGAAGAAGTCTAAGCTTAGTGTTGTAGTT
194 TAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTT
* * *
43817470 TATAACAAATAACAAAGAAAACAGAAATGAAACTTAAGAAGACTTTATTCA-TAAGGCAATTCTT
259 TATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAA-GCCATTCTT
*
43817534 TAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAATTGAACCTTAACGG
323 TAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGG
* * ** *
43817599 CTAACCACTTATATATAAAACTATGACA
388 CTAACTACTTATATAGAGGACTATGATA
* * * * * *
43817627 TAATTTGGAAATCACATTAAATATTTACATGAAAAGGCAAGTATATCTAAGGGCCCTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * *
43817692 GACAATTACTGCTGCCTTCTTCACCTTTCCTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * * * *
43817757 TTAATGCTCTTTTTCATTCTTTTTCATTCCATAACAAATATTAGAGTTTTTGAACCATAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * *
43817822 ATTGTGTGTTTGGCATCTTTTGTCTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* * * *
43817887 TAGCAAAGAACAAAGAAAACAGAAATGATACTTAAAAAGACTTTATTCATTAAGCCATTCTTTAA
261 TAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
* *
43817952 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTCACGGCTC
326 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTA
43818017 ACTACTTATATAGAGGACTATGATA
391 ACTACTTATATAGAGGACTATGATA
* *
43818042 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCAAAGGGCCCTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * * * **
43818107 GACAATTGTTGTTGCCTTCTTAAAATTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * *
43818172 TTAATGCTACTTTTTATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTAATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * * *
43818237 ATTGTGTGTTTGGCATTTTTTGTTTGTAAGGGGTGGAAGAAGTCTAGGCTTAGTGTTGAAGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* * * * *
43818302 TCACAAATAACAAAGAAAACAGAGATGAAACTTAAGAAGACTTTATTCATAAAGCCATTCTTTAA
261 TAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
* * *
43818367 TGCAAAGGCGTTGTACATATTATATAGGAGTGTTGACTAACAGACTAATTGAACCTTAACGACTA
326 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTA
* * *
43818432 ACTACTTATATAAATGACTATGGTA
391 ACTACTTATATAGAGGACTATGATA
* * * * * *
43818457 TAATTTGGAAATCGCATGAATTACTTACTTGAAAAGG-AATGTATCTCTGATGACCCTGTTGTGC
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAA-GTATCTCTAAGGACCCTGTTGAGC
* * ** * * *
43818521 AAACAATTACTGCTTGCTTCTTCACCTTTCTTCACCTATACTATGTTCCTTCTCTT-CTTTTTGT
65 AGACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCT-TTCCTTTTTGT
* * *
43818585 CCTTAATGCTCATTTTCATTCTTTTTCATTTCATATTAAATATTAGAGTTTTTGAACCCTAGTGA
129 CCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGA
** * *
43818650 TAATTGTGTGTTTGGCGTTTTTTGTTTGTAAATGGTGGAGGAAGTCTAAGCGTAGTGTTGAAGTT
194 TAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTT
* * * * *
43818715 TTTAA-AATATAAAAAAGAAAACATAAATAATACTTAAAAAGACTTTATCCATTAAGCCATTCTT
259 TATAACAA-ATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTT
* * * * *
43818779 TAATGCAAAGGCACTATACATATTATATAGGAGTGTTAAGTAACAAACTAACTGAACCTTAACGG
323 TAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGG
*
43818844 CTCACTACTTATATAGAGGACTATGATA
388 CTAACTACTTATATAGAGGACTATGATA
* * *
43818872 CAATTTGGAAATCGTATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAAGACCCTGTTGGGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
** * * * * *
43818937 GACAATTTTTGCTCTCTTTTTTACCTTTCTTCACCTATGCTACGTCCCTACTTTCCTTTTTGTCC
66 GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * *
43819002 TTAATGCTCCTATTCATTCTTTTTTATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTAATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * *
43819067 ATTGTGTGTTTGGCATTTTTCGTTTGTAAGGGGAGGAGGAAGTCTAAGCGTAGTGTTGAAGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
43819132 TAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
261 TAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
* * * * * *
43819197 TGCAAAGGCGTTGTACATATTGTATAGGAATGTTAACTAACAGACTAACTTAACCTTAACGGCTC
326 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTA
**
43819262 ACTACTTATATAGAAAACTATGATA
391 ACTACTTATATAGAGGACTATGATA
*
43819287 CAATTTGGAAATCGCAT-AAATATTTACTTGAAAAGGCAAGTATCTCTAAAGACCCTGTTGAG-A
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * *
43819350 GGACAATTGCTGATCACTTCTTCACCTTTCTTCACCTATGCTACGTGCATTCTTTCCTTTTTGTC
66 -GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
* * * * *
43819415 CTTAATGCTAAC-TTTCATTCTTTTTCATTTTATATCACATATTAGAGTTTTTGAACTCTAGTAA
130 CTTAATGCT-CCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGA
* * * * * *
43819479 TAATTGTGTATTTAGCATTTTTTATTTGTAAGGAGAGGAAGAAGTCTAAGCATAGTGTTGAAGTT
194 TAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTT
* * * *
43819544 TATAACAAATAACAAAGAAAAGAGAAATGAAACTTATGAAGACTTTATTCATTAAGCCATTCTTT
259 TATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTT
* * * *
43819609 AATGCAAAGGCGTTGCACATATTGTATAGGAGTGTTGACTAACAGACTAACTTAACCTTAACGGC
324 AATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGC
*
43819674 TCACTACTTATATAGAGGACTATGATA
389 TAACTACTTATATAGAGGACTATGATA
* * * * *
43819701 AAATATGGAACTCGCAT-AAATATTTACTTGAAAAGGCAAGTATCTCTAAAGACCCTATTGAG-A
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* *
43819764 GGACAATTACTGCTACCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
66 -GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
* * *
43819829 CTTAATGCTCCATTTCATTCTTTTTCATTCCATATCAAATATTAGAGTTTTTGAACCCTAGTGAT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
43819894 AATTGTGTGTTTGGC-TTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* *
43819958 ATAACAAATAACAAAGAAAACATAAATGAAACTTAAGAAGACTTTATTCATAAAGCCATTCTTTA
260 ATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
* ** * * * * *
43820023 ATGTAAAGGTACTGTACATATTTTATAGCAGTATTCACTAACAGACTAACTAAACCTTAACGGCT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
* *
43820088 AAATACTTATATAGAGAACTATGATA
390 AACTACTTATATAGAGGACTATGATA
* * * * * *
43820114 CAATTTGGAAATCGC-TTAAATTCTTTACTTAAAAAGGCAAGTATGTCTAAAGACCCTGTTGTGC
1 CAATTTGGAAATCGCATGAAA-TATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGC
* *
43820178 AGAAAATTGCTACTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
65 AGACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
* * * * *
43820243 ATTAATGGTCCTTTTCATTCTTTTTCATTTCATATCAAATATTAGAGCTTTTGACCCCTAGTGAT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
* *
43820308 AATTGTGTGTTTGGCGTTTTTTCTTTGTAAGGGGAGGAAAAAGTCTAAGCGTAGTGTTGAAGTTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* * *
43820373 ATAGCAAATAACAAAGAAAACAGAAATGATACTTAAAAAGACTTTATTCATTAAGCCATTCTTTA
260 ATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
* * * *
43820438 ATGCAAAGGCGTTGTACATATTATATAGGAGCGTTGACTAATAGACTAACAGAACCTTAACGGCT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
* *
43820503 CATTACTTATATAGAGGACTATGATA
390 AACTACTTATATAGAGGACTATGATA
* * * *
43820529 CAAATTAGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCAAAGGGCCCTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * * * **
43820594 GACAATTGTTGTTGCCTTCTTAAAATTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * * *
43820659 TTAATGCTACTTTTTATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACACTAGTAATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * *
43820724 ATTGTGTGTTTGGCATTTTTTGTTTGTAAGGGGTGGAAGAAGTCTAAGCTTAGTGTTGAAGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* * * *
43820789 TAACAAATAACAAAGAAAACAAAAATGAAACTGAAGAAGACTTTATTCATAAAGCCATTCTTTAA
261 TAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
* * * *
43820854 TGCAAAGGTGTTGTACATATTATATAGGAGTGTTGACTACCAGACTAATTGAACCTTAACGGCTA
326 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTA
* *
43820919 ACTACTTATATAGATGACTATGGTA
391 ACTACTTATATAGAGGACTATGATA
* * * * * * * *
43820944 TAATTTGGAAATTGCATGAATTACTTACTTGAAAAGGGATGTATCTCTGAGGACCCTGTTGTGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * * *
43821009 AACAATTGCTGCTCGCTTCTTCACCTTTCTTCACCAATGCTATGTGCCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
*
43821074 TTAATGCTCATTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * * *
43821139 ATTGTGTGTTTGGAGTTGTTTGTTTGTAAGGGGTGGAGGAAGTCTAAGCGTAGTGTTGAAGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* * * *
43821204 TAAAAAATAAAAAAGAAAACATAAATGACACTTAAGAAGACTTTATCCATTAAGCCATTCTTTAA
261 TAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
*
43821269 TGCAAAGGCGCTAG-ACATATTATATAGGAGTGTTGAGTAACAGACTAACTGAACCTTAACGGCT
326 TGCAAAGGCGCT-GTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
* * *
43821333 CACTGCTTATATAAAGGAC--TGATA
390 AACTACTTATATAGAGGACTATGATA
* * *
43821357 CAATTTGGAAATCGTATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTATTGGGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * * *
43821422 GACAATTGTTGCTCCATTCCTT-ACCTTTCTTCACCTATGCTACGTCCCTACTTTCCTTTTTGTC
66 GACAATTGCTGCTCCCTT-CTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
* *
43821486 CTTAATGCTCCTTTTCATTCTCTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGTT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
* ** *
43821551 AATTGTGTGTTTGGCGTTTCTCATTTGTAAGGGGAGGAGGAAGTGC-AAGCGTAGTGTTGAAGTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGT-CTAAGCGTAGTGTTGAAGTT
*
43821615 TATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCATT
259 TATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTT
* * * **
43821680 AATGCAAAGGCGTTGTACATACTATATTA-GAGTGTTAACTAACAGTGTAACTGAACCTTAACGG
324 AATGCAAAGGCGCTGTACATATTATA-TAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGG
*
43821744 CTAACTACTTATATAAAGGACTATGATA
388 CTAACTACTTATATAGAGGACTATGATA
* * *
43821772 CAATTTGGAAATCGCATGAAATATTTACTT-AAAAGGGCAAGTCTCTCTAAGGGCCCTGTTGGGC
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAA-GGCAAGTATCTCTAAGGACCCTGTTGAGC
* * * *
43821836 AGACAATTGTTGCTCCCTTCTTCACCTTTCTTTACCTATGCTACGTCCCTTTTTTCCTTTTTGTC
65 AGACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
* *
43821901 CTTAATGCTCCTTTTCATTCTTTTTTATTTCATATAAGATATTAGAGTTTTTGAACCCTAGTGAT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
* *
43821966 AATTGTGTGTTTGGCATTTTTTGTTTGTAA-GGGAGG-AGTAAGTCTAAGCGCAGTGTTGAAGTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAG-AAGTCTAAGCGTAGTGTTGAAGTT
* * * *
43822029 TATAACAAATAACAAAGAAAATAGAAATGATA-TTAAGAAGAATTTATTCATTAGGCCATTCTTT
259 TATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTT
* * * *
43822093 AATGCAAAGGCACTGTACATATTATATCA-GAGTGTTGACAAATAGACTAACTAAACCTTAACGG
324 AATGCAAAGGCGCTGTACATATTATAT-AGGAGTGTTGACTAACAGACTAACTGAACCTTAACGG
* *
43822157 CTAACAACTTATGTAGAGGACTATGATA
388 CTAACTACTTATATAGAGGACTATGATA
* * * * * * * *
43822185 CAATTTGGAAATCGCATGAACTATTAATTTAAAAAGGGAAGTATCTCTAGGGACCCTATTGGGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* *
43822250 GACAATTGTTGCTCCCTTCTTCA-CTTGTCTTCACCTATGCTACATGCCTTCTTT-CTTTTTGGT
66 GACAATTGCTGCTCCCTTCTTCACCTT-TCTTCACCTATGCTACGTGCCTTCTTTCCTTTTT-GT
* * * * *
43822313 CGTTAATGCTCATTTTCATTCTTTTCCA-TTCTATATCGGATATTAGAGTTTTTGAACCCAAGTG
129 CCTTAATGCTCCTTTTCATTCTTTTTCATTTC-ATATCAGATATTAGAGTTTTTGAACCCTAGTG
* * * * * **
43822377 ACAATTGTGTGTTTGGCGTTTTTTGTTTTTCAGGGGAGGAAGAATTTTAAGCACAGTGTTGAAGT
193 ATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGT
* * * * * * *
43822442 TTATAACAAATAACTAAGAAAATAAAAATGATACCTAAGAAGACATTCTTCATTAAGTCATTCTT
258 TTATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTT
* *
43822507 TAATGCAAAGGCACTGTACATATTATATAGGAGTGTTGACTAACAGATTAACTGAACCTTAACGG
323 TAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGG
* * * ** *
43822572 TTAACTACTCATATATAAAACTATGACA
388 CTAACTACTTATATAGAGGACTATGATA
* * * * * *
43822600 CAATTTAGAAATCACATTAAATATTTACTTGAAAAAGCAAGTACCTCTAAGGGCCCTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * * * * *
43822665 GACAATTGATGTTGCCTTCTTCACCGTTCTTCACCTATGCTACATGTCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* *
43822730 TTAATGCTCCTTTTCATTCTTTTTAATTTCATATCAGATATTAGAGTTTTTGAACCTTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * * * * ** *
43822795 ATTGTGTGTTTGGCGTTTTTTTGTTTTTAAAGGGAGGAAGGAGTTTAAACACAGTGTTGAAATTT
196 ATTGTGTGTTTGGCG-TTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* *
43822860 ATAACATATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
260 ATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
* * * *
43822925 ATGCAAAGGCGTTGTACATATTCTATAGGAGTGTTGACTAACAGACTAACTGAACCTTCAGGGCT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
* *
43822990 CACTACTTATATAGAGGACTATGATG
390 AACTACTTATATAGAGGACTATGATA
* * *
43823016 CAATTTAGAAATCGCATGAAATATTTACTTGAAAAGACAAGTATCTCTAAGGACCCGGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* *
43823081 GACAATTGCTACTCCCTTCTTCACTTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
** * * *
43823146 TTAATGCTTATTGTT-ATTCTTTTTCATTCCATATCAGATATTAGAGTTTTCGAACCCTAGT-AA
131 TTAATGCTCCTT-TTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
* * *
43823209 ATATTGTGTGTTTGGCGTTTTTAGTTTGTAAGGGGTGGAAGAAGTCTAAGCTTAGTGTTTGAA--
195 A-ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTG-TTGAAGT
* * * * * * *
43823272 --ATGA-AACT---TAAGAAGAC-T---T--TA-TT-------C---A-T-A-AAG-CCATCCTT
258 TTATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTT
** * *
43823310 TAATGCAAAGGCATTGTACATATTATATAGGAGTGTTGACTAACAGACTTATTGAACCTTAACGG
323 TAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGG
*
43823375 CTAACTACTTATATAGAGGACTATGGTA
388 CTAACTACTTATATAGAGGACTATGATA
* * * * * * *
43823403 TAATTTAGAAATCACATGAATTATTTACTTGAAAAGGGATGTATCTCTAAGGACCCTGTTGTGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * *
43823468 GACAATTGCTGCTCGCTTCTTCACCTTTCTTCATCTATGTTACGTGCCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
*
43823533 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATTAGATATTAGAGTTTTTGAACCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * * **
43823598 ATTGTGTGTTTGGCGTTTTTTGATTGTAAGAGGTGGGGGAAGTCTAAGCGTAGTGTTGAAGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* * * * *
43823663 TAAAAAATAAAAAAGAAAACATAAATAATACTTAAAAATACTTTA-TCGATTAAGCCATTCTTTA
261 TAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTC-ATTAAGCCATTCTTTA
* * * *
43823727 ATGCAAAAGCGCTCTACATATTATATAGGAGTGTTGAGTAACAAACTAACTGAACCTTAACGGCT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
*
43823792 CACTACTTATAT-----A--ATGATA
390 AACTACTTATATAGAGGACTATGATA
* * ** *
43823811 CAATTTGGAAATCGTATGAAATATTTACTTGAAGAGGCAAGTATCTCTAAGGACGTTGTTGGGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * * *
43823876 GCCAATTGTTGCTCCTTTCTTCACCTTTCTTCACCTATGCTACGTCCCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
*
43823941 TAAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * * *
43824006 ATTGTGTGTTTGGTGTTTTTTGTTTGTAATGGGAGGAGGAAGTCTAAGCGTAGTGTTGATGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* * * * *
43824071 TAAAAAATAACAAAGAAAACAAAAATGATATTTAATAAGACTTTATTCATTAAGCCATTCATTAA
261 TAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
* *
43824136 TGCAAAGGCGTTGTACATATTATATAGGAGTGTTGAGTAACAGACTAACT-AATCCTTAACGGCT
326 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAA-CCTTAACGGCT
*
43824200 CACTACTTATATAGAGGACTATGATA
390 AACTACTTATATAGAGGACTATGATA
* * * *
43824226 CTATTTAGAAATCGTATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGGGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
** *
43824291 GACAATTG-TGGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGACCCTTCATTCCTTTTTGTC
66 GACAATTGCT-GCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
* * *
43824355 CTTAATGCACCTTTCCATTCTTTTTCATTTCATATCAGATATTATAGTTTTTGAACCCTAGTGAT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
43824420 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGG-AGAAAGTCTAAGCGTAGTGTTGAAGTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAG-AAGTCTAAGCGTAGTGTTGAAGTT
*
43824484 TATAACAAATAACAAA-AAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCATT
259 TATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTT
* * *
43824548 AATGCAAAGGCACTGTACATATTATATTA-GAGTGTTGACTAACAGAGTAACTGAACCTTAACAG
324 AATGCAAAGGCGCTGTACATATTATA-TAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGG
* *
43824612 CTAACTACTTATACAAAGGACTATGATA
388 CTAACTACTTATATAGAGGACTATGATA
* * * * *
43824640 CAATTTAGAAATCGCATGAAATATTTACTTGAAAAGGCAATTATCTATAAGGGCCCTGTTGGGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * * * *
43824705 AACAATTGGTTCTCCCTTCTTCACCTTTCTTCACATATGCTACGTCCCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* *
43824770 TTAATGCTCCTTTTCATTCTTTTTTATTTCTTATCAGATATTAGAGTTTTTGAACCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* *
43824835 ATTATGTGTTTGGCGTTTCTTGTTTGTAAGGGGAGG-AGTAAGTCTAAGCGTAGTGTTGAAGTTT
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAG-AAGTCTAAGCGTAGTGTTGAAGTTT
* * * *
43824899 GTAACAAATAACAAAGAAAACATAAATGATACTTGAGAAGACTTTATTCATTAAGTCATTCATTA
260 ATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
* * * * * *
43824964 ATGCAAAGGCGCTGTATATATTATATTA-TAGTGTTGACTTACAGAGTAAATGAACCTTAAGGGC
325 ATGCAAAGGCGCTGTACATATTATA-TAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGC
*
43825028 TAACTACTTATATAAAGGACTATGATA
389 TAACTACTTATATAGAGGACTATGATA
* * * * *
43825055 CAGTTTGGAAATCACATGAGATATTTACTTGAAAAGGAAAGTATCTCTAAGGACCCTGTTGAGTA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * * *
43825120 GACAATTGATGCTGCCTTCTTCACCTTTTTTCACCTATGCTACATGCCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * *
43825185 TTAATGCTCCTTTTCATTCTTTTTCATTTCAGATCAGATATTAGAGTTTTTGACCCCTAATGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
** * * * *
43825250 ATTGTGTGTTTGGAATTTTTTGTTAGTAA-GGCACGGAAGAAGTCTCAGCGAAGTGTTGAAGTTT
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGA-GGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* * * *
43825314 ATAACAAATAACAAA-AAAATAGAAATGATACTTAAAAAGACTTTATTCA-TAATCCATTCTTTA
260 ATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
* * * * *
43825377 ATGCAAAGGCACTATACATATTATATCGGAGTGTTGACTAACATACTAACTAAACCTTAACGGCT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
43825442 AACTACTTATATAGAGGACTATGATA
390 AACTACTTATATAGAGGACTATGATA
* * * *
43825468 CAATTTGGAAACCGAATGAAATTTTTACTTGAAAAGG-ACAGTATCTCTAAGGACCCTGTTGAGT
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCA-AGTATCTCTAAGGACCCTGTTGAGC
* * *
43825532 AGACAATTGCTGCTCCATTCTTCACATTTCTTCACCTATGCTACGTGCCTTCTTTCCATTTTGTC
65 AGACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
* * * * *
43825597 CTTAATGCTCATTTTTATTCTTTTCCATTTTATATCAGATATTAGAGTTTTTAAACCCTAGTGAT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
* * *
43825662 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAATTTTAAGCGCAGTGTTGAAGTTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* * * * *
43825727 ATAACAAATAACAAAGAAAATAAAAACGATACTTAAGAAGACTTTCTTCATTAAGTCATTCTTTA
260 ATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
*
43825792 ATGTAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
* ** * *
43825857 AACTACTTATATATAAAATTATGACA
390 AACTACTTATATAGAGGACTATGATA
* * * *
43825883 CAATTTAGAGATTGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGGCCCTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * *
43825948 AACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACATGCCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
*
43826013 TTAATGCT-CTCTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTAAACCCTAGTGAT
131 TTAATGCTCCT-TTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
* * * *
43826077 AATTGTGTGTTTGGCATTTTTTGTTTGTAAGGGGAGGAAGAAATCTAAGCGCAGTGTTGAAATTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* *
43826142 ATAACAAATAACAAAGAAAACAAAAATTATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
260 ATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
*** * *
43826207 ATGCAAAGGTAATGTACATATTATATCGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGTT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
*
43826272 AACTACTTATACAGAGGACTATGATA
390 AACTACTTATATAGAGGACTATGATA
* * * * * ** ***
43826298 CAATTTGGAAATCGCTTGAACTATTTATTTGAAAAGGGATGTATCTCTTAA-GATTCTGTTTTCC
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTC-TAAGGACCCTGTTGAGC
* * * *
43826362 AGACAATTGTTGCTGCCTTCTTCACCTTTCTTCACCTACGCTACTTGCCTTCTTTCCTTTTTGTC
65 AGACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
* * *
43826427 CTTAATGCTCCCTTTCATTCTTTTTCATTTCATATCAGTTATTAGAGTTTTTGAACCCTAGTGGT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
* * * * * *
43826492 AATTGTATGTTTGGC-ATTTTT-TTTGTATGGGGAGGAAGAATTCTAAGTGCAGTGTTGAAGTTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* * * **
43826555 ATAACAAATAACAAAGAAAATAGAAATGGT-CTTAAGAAGACCATATTCATT-AGTCCATTCTTT
260 ATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAG-CCATTCTTT
* * * **
43826618 AATGCAAAGGCACTGTACATGTTATATCA-CAGTGTTGA-TAAACAGACTAACAAAACCTTAACG
324 AATGCAAAGGCGCTGTACATATTATAT-AGGAGTGTTGACT-AACAGACTAACTGAACCTTAACG
*
43826681 GCTAACTACTAATATAGAGGACTATGATA
387 GCTAACTACTTATATAGAGGACTATGATA
* * * * * * *
43826710 CAATTTGGAAATCGCATGAACTATTTATTTTAAAAGGGAAGTATCTCTAAGGATCCTATTGTGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * *
43826775 GACAATTGCTACTGCCTTGTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * * *
43826840 TTAATGCTCCTTTTCATTATTTTTCATTTCATATAAGATATTAGAGTTTTTTACCCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* ** * * *
43826905 ATTGTGTATTTTACGTTTTTTATTTGTAAGGGGAGGAAGAAGTCTAAGCATAGTGCTGAAGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* *
43826970 TAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTAATCATTAAGCCATTCTTTAA
261 TAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
* * * * * *
43827035 TGTAAAGGCGTTGTA-ATATTATATCGGAGTGCTGACTAATAGACTAACTAAACCTTAACGGCTA
326 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTA
*
43827099 ACTACTAATATAGAGGACTATGATA
391 ACTACTTATATAGAGGACTATGATA
** * * * * * *
43827124 CAATTTGGAAATCGCATGAACCATTTATTTGAAAAGGGAAGTATCTTTAAGGATCCTATTGTGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * *
43827189 GACAATTGCTGCTTCCTTCTTCACCTTTCTTCACCTCTTCTACGTGCCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * * *
43827254 TTAATTCTCATTTTTATTCTTTTTCATTCCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * *
43827319 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGTGGAAGAAGTCTACGCTTAGTGTTGAAGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* * * * *
43827384 TAACAAATAACAATGAAAACATAAATGAAACTTAGGAAGACTTTATTCATAAAGTCATTCTTTAA
261 TAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
43827449 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTA
326 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTA
* *
43827514 ACTACCTGTATAGAGGACTATGATA
391 ACTACTTATATAGAGGACTATGATA
* * * * *
43827539 CAATTTGGAAATCGCATGAATTATTTACTT-AAAGGGGGATGTATCTCTAAGGACCCTGTTGTGC
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAA-AGGCAAGTATCTCTAAGGACCCTGTTGAGC
*
43827603 AGACAATTTCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTT-CTTTTT-TC
65 AGACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
**
43827666 CTTAATGCAACTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
* * * * *
43827731 AATTGTGTGTTTTGCATTTTTTGTTTGTAAGGGGAGCAAGAAGTTTAAGCGCAGTGTTGAAGTTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* * * **
43827796 ATAACAAATTACAAAGAAAACATAAATGATATTTAAGAATACTTTATTCATTAAGCTGTTCTTTA
260 ATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
* ** *
43827861 ATGCAAAGGCACTGTACATATTATATAATAGTGTTGACTAACAGACTAACTAAACCTTAACGGCT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
* * *
43827926 AACTACTTATATATAGCACTAAGATA
390 AACTACTTATATAGAGGACTATGATA
* * * * **
43827952 CAAATTGTAAATCGCATGAAATATTTACTTAAAAAGGCAAGTAACTCTAAGGACCCTGTTGAGTT
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
43828017 GACAATTGCTGCTCCCTTCTTCACC--T-TT---CT-T-C-AC-T---TTC--T--TTTTTGTCC
66 GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * *
43828065 TTAATGCTCCTTTTTATTCTTTTTCATTTCATATCAGATGTTAGAATTTTTGAACCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * * * *
43828130 ATTGTGTGTTTGGCGTTTTTTATTTGTAAGGGGAGGAAGAAGTCTAAGCGCAGTATTCATGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* *
43828195 TAATAAATAAGAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
261 TAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
* * * * * *
43828260 TGCAAAGGTGCTGTGCATATTATATCGGAGTGCTGACTAACAGACTAACTAAACCTTAAAGGCTA
326 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTA
43828325 ACTACTTATATAGAGGACTATGATA
391 ACTACTTATATAGAGGACTATGATA
*
43828350 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTGAGGACCCTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* *
43828415 GACAATTGCTGCTCCCTTCTGCTCCCTTATTCACCTTTCTTCACCTCTTCTACGTGCCTTCTTTC
66 GACAATTGCTGCT-CC--CT--T--C---TTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTC
* * * * * * *
43828480 CTTTTCGTCGTTAAGGCTCATTTTTATTCTTTTTCATTCCATATCAGATATTGGAGTTTTTGAAC
121 CTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAAC
* * * **
43828545 CCTAGTGATAATTGTGTGTTTGGCATTTTTAT-TTTGTAATGAGAGGAAGAAGTCTAAGTTTAGT
186 CCTAGTGATAATTGTGTGTTTGGCGTTTTT-TGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGT
* * * * *
43828609 GTTGAAGTTTATTACAAATAACAAAGAAAACATAAATGAAACTTAAAAAGTCTTTATTCATAAAG
250 GTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAG
* *
43828674 CCATTCTTTAATGCAAAGGCGCTATACATATTATATAGGAGTGTCGACTAACAGACTAACTGAAC
315 CCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAAC
43828739 CTTAACGGCTAACTACTTATATAGAGGACTATGATA
380 CTTAACGGCTAACTACTTATATAGAGGACTATGATA
* * *
43828775 CAATTTGAAAATCGCATGAATTATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTATTGTA-C
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTG-AGC
* *
43828839 AGACAATTGTTGCTCCCTTCTTCA-CTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGAC
65 AGACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
* * *
43828903 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAAATATTAGAGTTTTTGACCCCAAGTGAT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
* * *
43828968 AATTGTGTGTTTTGCATTTTTTGTTTGTAAGGAGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* * * *
43829033 ATAACAAATAACAAAGAAAAGAGAAATGATACTTAAGAAAACTTTATTGATTAAGCCATTCTTTA
260 ATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
* * *
43829098 ATGCAAAAGCGCTGTACATATTATATAGGAGTGTTGACTAACAAACTAACTGAACCTTAACGACT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
* *
43829163 CACTACTTATATAGAGGACTATGACA
390 AACTACTTATATAGAGGACTATGATA
* * * *
43829189 CAATTTCGAAATCACATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGGGTA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * **
43829254 GACAATTGCTGCTCCCTTCTTCATCTTTCTTTACCTATGCTACGTTTCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * *
43829319 TTAATGCTCGTTTTCATTCTTTTTCATTGCATATCAAATATTAGAGTTTTTGAACCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
** * * *
43829384 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAATGGTGGAGGAAGTCTAAGCGTAGTGTTGAAGTTTT
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* * * * *
43829449 TAA-AATATAAAAAAGAAAACATAAATAATACTTAAAAAGACTTTATCCATTAAGCCATTCATTA
261 TAACAA-ATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
*** * * *
43829513 ATGCAAAGGTATTGTACATATTATATAAGAGTGTTGACTAACAGACTAACTGAACCTTAATGTCT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
43829578 AACTACTTATATAGAGGACTATGATA
390 AACTACTTATATAGAGGACTATGATA
*** * * * *
43829604 CAATTCAAAAATCGCATCAAATTTTTACTTAAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGTA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * * * * *
43829669 GACAATTGTTGTTCTCTTCTTCACCTTTCTTCACCTATGCTACGTACCTTCTTTCTTTTTTATCC
66 GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * * *
43829734 TTGATGCTCCTTTTTATTCCTTTTCATTTCATATTAGATATTAGAGTTTTTGAACCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * *
43829799 ATTGTGTGTTTGGTGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGCAGTGTTGATGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
*
43829864 TAACAAATAACAAAGAAAACATAAATGATACTTTAGAAGACTTTATTCATTAAGCCATTCTTTAA
261 TAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
43829929 T
326 T
43829930 AACCAAATTA
Statistics
Matches: 13472, Mismatches: 1526, Indels: 377
0.88 0.10 0.02
Matches are distributed among these distances:
386 7 0.00
387 310 0.02
388 3 0.00
389 1 0.00
390 4 0.00
391 4 0.00
394 8 0.00
395 1 0.00
397 5 0.00
398 330 0.02
399 2 0.00
400 5 0.00
401 6 0.00
402 2 0.00
403 2 0.00
404 386 0.03
405 255 0.02
406 1 0.00
407 4 0.00
408 433 0.03
409 114 0.01
410 5 0.00
411 18 0.00
412 314 0.02
413 1800 0.13
414 2525 0.19
415 5227 0.39
416 780 0.06
417 380 0.03
418 3 0.00
419 194 0.01
420 2 0.00
421 3 0.00
422 2 0.00
423 1 0.00
424 2 0.00
425 331 0.02
426 2 0.00
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.36
Consensus pattern (415 bp):
CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
TAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTA
ACTACTTATATAGAGGACTATGATA
Found at i:43817779 original size:828 final size:830
Alignment explanation
Indices: 43814334--43829929 Score: 21336
Period size: 828 Copynumber: 18.9 Consensus size: 830
43814324 AGAGAGGAAT
* *
43814334 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCACGTATCTCTAAGGACCCTGTTGAGTA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * * *
43814399 GACAATTG-T--TG----C-TC-CC-TTCTTCACCTACGCTACGTACCTACTTTCCCTTTTGTCC
66 GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
*
43814454 TTAATGCTCCTTTTCATTCTTTTTCATTTTATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * * * *
43814519 ATTATGCGTTTGGC-TTTTTT-TTTAGTAAGGGGAGGAAGAAGTCTAAGCGCAGTGTTCAAGTTT
196 ATTGTGTGTTTGGCGTTTTTTGTTT-GTAAAGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
*
43814582 ATAACAAATAACAAAGAAAACAGAAATGATACTTGAGAAGACTTTATTCATTAAGCCATTCTTTA
260 ATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
* * *
43814647 ATGCAAAGGCGTTGTACATATTATATAAGAGTGTTGACTAATAGACTAACTGAACCTTAACGGCT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
* * ** *
43814712 CACTACATATATAGAGGACTATGATACAATTTGGAAATCAAAAGAAATATTTACTTGAAAAGGCA
390 AACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCA
* * *
43814777 AGTATCTCTAAGGACTCTGTTGAGCAGACAATTGCTGCTTCCTTCTTCACCTTTCTTCACCTATG
455 AGTATCTCTAAGGACCCTGTTGAGCAGACAATTGTTGCTCCCTTCTTCACCTTTCTTCACCTATG
* * *
43814842 CTACGTGCTTTCTTTCCTTTTTGTCCATAATGCTCCCTTTCATTCTTTTTCATTTCATATCAGAT
520 CTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGAT
* * *
43814907 ATTA-ATGTTTTTGACCCCTAGTGATAATTATGTGTTTGGCGTTTTTTCTTTGTAAGGGGAGGAA
585 ATTAGA-GTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAA
* * * * *
43814971 GAAGTCTAAGCGCAGTGTTGAAGTTTATAACAAATATTAAAAAAAAAATAGAAATGATACTTAAG
649 GAAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATA--ACAAAGAAAACATAAATGATACTTAAG
* * *
43815036 AAGACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCACTATACATATTATATAGAAGTGTTGA
712 AAGACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGA
* * *
43815101 CTAACAGACTAACTCAACCATAACGACTAACTACTTATATAGAGGACTATGATA
777 CTAACAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
* *
43815155 CAATTTGGAAA-CTGTATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCTTGTTGAGC
1 CAATTTGGAAATC-GCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGC
*
43815219 AGACAATTGCTGCTCCCTTCTTC-CCATTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGT
65 AGACAATTGCTGCTGCCTTCTTCACC-TTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGT
* *
43815283 CCTTAATGCTCATTTTCATTCTTTTTCCTTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGA
129 CCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGA
* * * *
43815348 TAATTGTGTGTTTGGCGTTTTTTGTTAGTAAGGGGAGGAAGAAGTCTAAGCCTAATGTTGAAGTT
194 TAATTGTGTGTTTGGCGTTTTTTGTTTGTAAAGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTT
* *
43815413 TATAACAAATAACAAAAAAAAAAAACAAAAATGATACTTAAGAAGACTTTATTCATTAAGCCATT
259 TATAACAAATAAC----AAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATT
* * * * * *
43815478 CATTAATGCGAAGGCGCTGTAGATATTATATAGGAGTGTTGACGAACAGATTAACTAAACCTTAA
320 CTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAA
* * * * *
43815543 CGGCTACCTACTTATACAGAGGACCATGATACAATATGAAAATCGCATGAAATATTTACTTGAAA
385 CGGCTAACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAA
* * * * *
43815608 AGGCAACTATCTCTAAGGACCGTATTGAGCAGAGAATTGATG-------C-TC-CC-TTCTTCAC
450 AGGCAAGTATCTCTAAGGACCCTGTTGAGCAGACAATTGTTGCTCCCTTCTTCACCTTTCTTCAC
* *
43815663 CTATGCTACGTGCCTTCTTTCTTTTTTGTCCTTTATGCTCCTTTTCATTCTTTTTCATTTCATAT
515 CTATGCTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATAT
* * *
43815728 CAGATATTAGAGTTTTTGAAACCTAGTGATAATTTTCTGTTTGGC-TTTTTTGTTTGTAAGGGGA
580 CAGATATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGA
* * *
43815792 GGAAGAAGTCTAAGCGTAGTGTTGATGCTTATAACAAATAACAATGAAAACATAAATGATACTTA
645 GGAAGAAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTA
* * * * * *
43815857 AGAATACTTTATTCATTAAGCCATTCTTTATTTCACAGGCACTGTACATATTATATAAGAGTGTT
710 AGAAGACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTT
* * * *
43815922 GACTAATAGACTAACTTAACCTTAAAGCCTAACTACTTATATAGAGGACTATGATA
775 GACTAACAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
* *
43815978 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGAATCTCTAAGGACCTTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
*
43816043 GACAATTGCTGCTG---------CC-TTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTTTCC
66 GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * *
43816098 TTAATTCTCCTTTTCATTCTTTTTCATTTCATATCAGATATCAGAGTTTTTGACCCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * * * * *
43816163 ATTGTGTGTTTTGCGTGTTTTCTTTGTAAAGGGAGGAAGAATTCTAAGCGCAATGTTGAAGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAAGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
*
43816228 TAACAAATAAAAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
261 TAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
* * * * * * *
43816293 TGCAAAGGCACTGTATATATTATATCGGAGTGTTGACTAACAGAATAAATAAACCTTAACAGCTA
326 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTA
* *
43816358 ACTACTTATATAGAGGACTATGATACAATTTGGAAACCGTATGAAATATTTACTTGAAAAGGCAA
391 ACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAA
* ** *
43816423 GTATCTCTAAGGACCTTGTTGAGCAGACAATTGTTGCTCCCTTCTTTGCATTTCTTCACCTATGC
456 GTATCTCTAAGGACCCTGTTGAGCAGACAATTGTTGCTCCCTTCTTCACCTTTCTTCACCTATGC
* * * *
43816488 TACGTACCTTCTTTCCTTTTTGTCGTTAATGCTCATTTTCATTCTTTTTCATTTCATATTAGATA
521 TACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATA
* *
43816553 TTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGTGTTTTTTGTTTGTAAGGGGAAGAAGA
586 TTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGA
* * * * *
43816618 AGTCTAAGTGCAGTGTTGATGTTTATAACAAATAACAAAAAAAAACATAAATGATACTTAAGAAT
651 AGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAAC-AAAGAAAACATAAATGATACTTAAGAAG
*
43816683 ACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGTTGTACATATTATATAGGAGTGTTGACTA
715 ACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTA
* * *
43816748 ATAGACTAACTTAACCTTAACGGCTAACTACTTAAATAGAGGACTATGATA
780 ACAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
* *
43816799 CAATATGGAAA-CTGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGT
1 CAATTTGGAAATC-GCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGC
*
43816863 AGATC-ATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTATTTCCTTTTTGT
65 AGA-CAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGT
*
43816927 CCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATCTTAGAGTTTTTGAACCCTAGTGA
129 CCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGA
** * *
43816992 TAATTGTGTGTTTTACGTTTTTTATTAGTAAAGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTT
194 TAATTGTGTGTTTGGCGTTTTTTGTTTGTAAAGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTT
* * * * *
43817057 TATAAAAAATAACAAAGAAAAGAGAAATGAAACATATGAAGACTTTATTCATTAAGCCATTCTTT
259 TATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTT
* * * *
43817122 AATGCAAAGGCGTTGTACATATTGTATAGGAGTGTTGACTAATAGACTAACTTAACCTTAACGGC
324 AATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGC
* * *
43817187 TCATTACTTATAAAGAGGACTATGATACAATTTGGAAATCGCAT-AAATATTTACTTGAAAAGGC
389 TAACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGC
* * *
43817251 AAGTATCTCTAAGGACCCTGTTGAG-AGGACAATTGTTGATCCCTTCTTCACCCTTCTTTACCTA
454 AAGTATCTCTAAGGACCCTGTTGAGCA-GACAATTGTTGCTCCCTTCTTCACCTTTCTTCACCTA
* * *
43817315 TGCTATGTGCCTTCTTTCCTTTTTGTCCTTAATGCTAAC-TTTCATTCTTTTTCATTTTATATCA
518 TGCTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCT-CCTTTTCATTCTTTTTCATTTCATATCA
* * * * *
43817379 GATATTAGAGTTTTTGAA-CCTAGTAATAATTGTGTATTTAGCGTTTTTTATTTGTAAGGAGAGG
582 GATATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGG
* * * *
43817443 AAGAAGTCTAAGCTTAGTGTTGTAGTTTATAACAAATAACAAAGAAAACAGAAATGAAACTTAAG
647 AAGAAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAAG
*
43817508 AAGACTTTATTCA-TAAGGCAATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTG
712 AAGACTTTATTCATTAA-GCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTG
* * * ** *
43817572 ACTAACAGACTAATTGAACCTTAACGGCTAACCACTTATATATAAAACTATGACA
776 ACTAACAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
* * * * * *
43817627 TAATTTGGAAATCACATTAAATATTTACATGAAAAGGCAAGTATATCTAAGGGCCCTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* *
43817692 GACAATTACTGCTGCCTTCTTCACCTTTCCTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * * * *
43817757 TTAATGCTCTTTTTCATTCTTTTTCATTCCATAACAAATATTAGAGTTTTTGAACCATAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * * *
43817822 ATTGTGTGTTTGGCATCTTTTGTCTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAAGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* * *
43817887 TAGCAAAGAACAAAGAAAACAGAAATGATACTTAAAAAGACTTTATTCATTAAGCCATTCTTTAA
261 TAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
* *
43817952 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTCACGGCTC
326 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTA
43818017 ACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAA
391 ACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAA
* * * * * **
43818082 GTATCTCAAAGGGCCCTGTTGAGCAGACAATTGTTGTTGCCTTCTTAAAATTTCTTCACCTATGC
456 GTATCTCTAAGGACCCTGTTGAGCAGACAATTGTTGCTCCCTTCTTCACCTTTCTTCACCTATGC
* *
43818147 TACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTACTTTTTATTCTTTTTCATTTCATATCAGATA
521 TACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATA
* * *
43818212 TTAGAGTTTTTGAACCCTAGTAATAATTGTGTGTTTGGCATTTTTTGTTTGTAAGGGGTGGAAGA
586 TTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGA
* * * * * *
43818277 AGTCTAGGCTTAGTGTTGAAGTTTATCACAAATAACAAAGAAAACAGAGATGAAACTTAAGAAGA
651 AGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGA
* *
43818342 CTTTATTCATAAAGCCATTCTTTAATGCAAAGGCGTTGTACATATTATATAGGAGTGTTGACTAA
716 CTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAA
* * * * *
43818407 CAGACTAATTGAACCTTAACGACTAACTACTTATATAAATGACTATGGTA
781 CAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
* * * * * *
43818457 TAATTTGGAAATCGCATGAATTACTTACTTGAAAAGG-AATGTATCTCTGATGACCCTGTTGTGC
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAA-GTATCTCTAAGGACCCTGTTGAGC
* * * * *
43818521 AAACAATTACTGCTTG-CTTCTTCACCTTTCTTCACCTATACTATGTTCCTTCTCTT-CTTTTTG
65 AGACAATTGCTGC-TGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCT-TTCCTTTTTG
* * *
43818584 TCCTTAATGCTCATTTTCATTCTTTTTCATTTCATATTAAATATTAGAGTTTTTGAACCCTAGTG
128 TCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTG
* * *
43818649 ATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAATGGTGGAGGAAGTCTAAGCGTAGTGTTGAAGT
193 ATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAAGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGT
* * * * * *
43818714 TTTTAA-AATATAAAAAAGAAAACATAAATAATACTTAAAAAGACTTTATCCATTAAGCCATTCT
258 TTATAACAA-ATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCT
* * * * *
43818778 TTAATGCAAAGGCACTATACATATTATATAGGAGTGTTAAGTAACAAACTAACTGAACCTTAACG
322 TTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACG
* *
43818843 GCTCACTACTTATATAGAGGACTATGATACAATTTGGAAATCGTATGAAATATTTACTTGAAAAG
387 GCTAACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAG
* * * * * *
43818908 GCAAGTATCTCTAAAGACCCTGTTGGGCAGACAATTTTTGCTCTCTTTTTTACCTTTCTTCACCT
452 GCAAGTATCTCTAAGGACCCTGTTGAGCAGACAATTGTTGCTCCCTTCTTCACCTTTCTTCACCT
* * * *
43818973 ATGCTACGTCCCTACTTTCCTTTTTGTCCTTAATGCTCCTATTCATTCTTTTTTATTTCATATCA
517 ATGCTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCA
* * *
43819038 GATATTAGAGTTTTTGAACCCTAGTAATAATTGTGTGTTTGGCATTTTTCGTTTGTAAGGGGAGG
582 GATATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGG
*
43819103 AGGAAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAAG
647 AAGAAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAAG
* * * *
43819168 AAGACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGTTGTACATATTGTATAGGAATGTTAA
712 AAGACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGA
* * **
43819233 CTAACAGACTAACTTAACCTTAACGGCTCACTACTTATATAGAAAACTATGATA
777 CTAACAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
*
43819287 CAATTTGGAAATCGCAT-AAATATTTACTTGAAAAGGCAAGTATCTCTAAAGACCCTGTTGAG-A
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* *
43819350 GGACAATTGCTGAT-CACTTCTTCACCTTTCTTCACCTATGCTACGTGCATTCTTTCCTTTTTGT
66 -GACAATTGCTGCTGC-CTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGT
* * * * *
43819414 CCTTAATGCTAAC-TTTCATTCTTTTTCATTTTATATCACATATTAGAGTTTTTGAACTCTAGTA
129 CCTTAATGCT-CCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTG
* * * * *
43819478 ATAATTGTGTATTTAGCATTTTTTATTTGT-AAGGAGAGGAAGAAGTCTAAGCATAGTGTTGAAG
193 ATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAAGG-GAGGAAGAAGTCTAAGCGTAGTGTTGAAG
* * *
43819542 TTTATAACAAATAACAAAGAAAAGAGAAATGAAACTTATGAAGACTTTATTCATTAAGCCATTCT
257 TTTATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCT
* * * *
43819607 TTAATGCAAAGGCGTTGCACATATTGTATAGGAGTGTTGACTAACAGACTAACTTAACCTTAACG
322 TTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACG
* * * *
43819672 GCTCACTACTTATATAGAGGACTATGATAAAATATGGAACTCGCAT-AAATATTTACTTGAAAAG
387 GCTAACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAG
* * ** *
43819736 GCAAGTATCTCTAAAGACCCTATTGAG-AGGACAATTACTGCTACCTTCTTCACCTTTCTTCACC
452 GCAAGTATCTCTAAGGACCCTGTTGAGCA-GACAATTGTTGCTCCCTTCTTCACCTTTCTTCACC
* *
43819800 TATGCTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCATTTCATTCTTTTTCATTCCATATC
516 TATGCTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATC
*
43819865 AAATATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGC-TTTTTTGTTTGTAAGGGGAG
581 AGATATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAG
*
43819929 GAAGAAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGAAACTTAA
646 GAAGAAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAA
* * ** * * * *
43819994 GAAGACTTTATTCATAAAGCCATTCTTTAATGTAAAGGTACTGTACATATTTTATAGCAGTATTC
711 GAAGACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTG
* * *
43820059 ACTAACAGACTAACTAAACCTTAACGGCTAAATACTTATATAGAGAACTATGATA
776 ACTAACAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
* * * * * *
43820114 CAATTTGGAAATCGC-TTAAATTCTTTACTTAAAAAGGCAAGTATGTCTAAAGACCCTGTTGTGC
1 CAATTTGGAAATCGCATGAAA-TATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGC
* * *
43820178 AGAAAATTGCTACTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
65 AGACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
* * * * *
43820243 ATTAATGGTCCTTTTCATTCTTTTTCATTTCATATCAAATATTAGAGCTTTTGACCCCTAGTGAT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
* * *
43820308 AATTGTGTGTTTGGCGTTTTTTCTTTGTAAGGGGAGGAAAAAGTCTAAGCGTAGTGTTGAAGTTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAAGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* *
43820373 ATAGCAAATAACAAAGAAAACAGAAATGATACTTAAAAAGACTTTATTCATTAAGCCATTCTTTA
260 ATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
* * * *
43820438 ATGCAAAGGCGTTGTACATATTATATAGGAGCGTTGACTAATAGACTAACAGAACCTTAACGGCT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
* * * *
43820503 CATTACTTATATAGAGGACTATGATACAAATTAGAAATCGCATGAAATATTTACTTGAAAAGGCA
390 AACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCA
* * * * * **
43820568 AGTATCTCAAAGGGCCCTGTTGAGCAGACAATTGTTGTTGCCTTCTTAAAATTTCTTCACCTATG
455 AGTATCTCTAAGGACCCTGTTGAGCAGACAATTGTTGCTCCCTTCTTCACCTTTCTTCACCTATG
* *
43820633 CTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTACTTTTTATTCTTTTTCATTTCATATCAGAT
520 CTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGAT
* * * *
43820698 ATTAGAGTTTTTGAACACTAGTAATAATTGTGTGTTTGGCATTTTTTGTTTGTAAGGGGTGGAAG
585 ATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAG
* * * *
43820763 AAGTCTAAGCTTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACAAAAATGAAACTGAAGAAG
650 AAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAG
* * *
43820828 ACTTTATTCATAAAGCCATTCTTTAATGCAAAGGTGTTGTACATATTATATAGGAGTGTTGACTA
715 ACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTA
* * * *
43820893 CCAGACTAATTGAACCTTAACGGCTAACTACTTATATAGATGACTATGGTA
780 ACAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
* * * * * * * *
43820944 TAATTTGGAAATTGCATGAATTACTTACTTGAAAAGGGATGTATCTCTGAGGACCCTGTTGTGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * *
43821009 AACAATTGCTGCT-CGCTTCTTCACCTTTCTTCACCAATGCTATGTGCCTTCTTTCCTTTTTGTC
66 GACAATTGCTGCTGC-CTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
*
43821073 CTTAATGCTCATTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
* * * * *
43821138 AATTGTGTGTTTGGAGTTGTTTGTTTGTAAGGGGTGGAGGAAGTCTAAGCGTAGTGTTGAAGTTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAAGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* * * * *
43821203 ATAAAAAATAAAAAAGAAAACATAAATGACACTTAAGAAGACTTTATCCATTAAGCCATTCTTTA
260 ATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
*
43821268 ATGCAAAGGCGCTAG-ACATATTATATAGGAGTGTTGAGTAACAGACTAACTGAACCTTAACGGC
325 ATGCAAAGGCGCT-GTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGC
* * * *
43821332 TCACTGCTTATATAAAGGAC--TGATACAATTTGGAAATCGTATGAAATATTTACTTGAAAAGGC
389 TAACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGC
* * *
43821395 AAGTATCTCTAAGGACCCTATTGGGCAGACAATTGTTGCTCCATTCCTT-ACCTTTCTTCACCTA
454 AAGTATCTCTAAGGACCCTGTTGAGCAGACAATTGTTGCTCCCTT-CTTCACCTTTCTTCACCTA
* * *
43821459 TGCTACGTCCCTACTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTCTTTCATTTCATATCAG
518 TGCTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAG
* * **
43821524 ATATTAGAGTTTTTGAACCCTAGTGTTAATTGTGTGTTTGGCGTTTCTCATTTGTAAGGGGAGGA
583 ATATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGA
*
43821589 GGAAGTGC-AAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAAG
648 AGAAGT-CTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAAG
* * * *
43821653 AAGACTTTATTCATTAAGCCATTCATTAATGCAAAGGCGTTGTACATACTATATTA-GAGTGTTA
712 AAGACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATA-TAGGAGTGTTG
** *
43821717 ACTAACAGTGTAACTGAACCTTAACGGCTAACTACTTATATAAAGGACTATGATA
776 ACTAACAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
* * *
43821772 CAATTTGGAAATCGCATGAAATATTTACTT-AAAAGGGCAAGTCTCTCTAAGGGCCCTGTTGGGC
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAA-GGCAAGTATCTCTAAGGACCCTGTTGAGC
* * * * *
43821836 AGACAATTGTTGCTCCCTTCTTCACCTTTCTTTACCTATGCTACGTCCCTTTTTTCCTTTTTGTC
65 AGACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
* *
43821901 CTTAATGCTCCTTTTCATTCTTTTTTATTTCATATAAGATATTAGAGTTTTTGAACCCTAGTGAT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
* *
43821966 AATTGTGTGTTTGGCATTTTTTGTTTGT-AAGGGAGG-AGTAAGTCTAAGCGCAGTGTTGAAGTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAAGGGAGGAAG-AAGTCTAAGCGTAGTGTTGAAGTT
* * *
43822029 TATAACAAATAACAAAGAAAATAGAAATGATA-TTAAGAAGAATTTATTCATTAGGCCATTCTTT
259 TATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTT
* * * *
43822093 AATGCAAAGGCACTGTACATATTATATCA-GAGTGTTGACAAATAGACTAACTAAACCTTAACGG
324 AATGCAAAGGCGCTGTACATATTATAT-AGGAGTGTTGACTAACAGACTAACTGAACCTTAACGG
* * * * * *
43822157 CTAACAACTTATGTAGAGGACTATGATACAATTTGGAAATCGCATGAACTATTAATTTAAAAAGG
388 CTAACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGG
* * * *
43822222 GAAGTATCTCTAGGGACCCTATTGGGCAGACAATTGTTGCTCCCTTCTTCA-CTTGTCTTCACCT
453 CAAGTATCTCTAAGGACCCTGTTGAGCAGACAATTGTTGCTCCCTTCTTCACCTT-TCTTCACCT
* * * *
43822286 ATGCTACATGCCTTCTTT-CTTTTTGGTCGTTAATGCTCATTTTCATTCTTTTCCA-TTCTATAT
517 ATGCTACGTGCCTTCTTTCCTTTTT-GTCCTTAATGCTCCTTTTCATTCTTTTTCATTTC-ATAT
* * * * *
43822349 CGGATATTAGAGTTTTTGAACCCAAGTGACAATTGTGTGTTTGGCGTTTTTTGTTTTTCAGGGGA
580 CAGATATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGA
* * ** * * * *
43822414 GGAAGAATTTTAAGCACAGTGTTGAAGTTTATAACAAATAACTAAGAAAATAAAAATGATACCTA
645 GGAAGAAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTA
* * * *
43822479 AGAAGACATTCTTCATTAAGTCATTCTTTAATGCAAAGGCACTGTACATATTATATAGGAGTGTT
710 AGAAGACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTT
* * * * ** *
43822544 GACTAACAGATTAACTGAACCTTAACGGTTAACTACTCATATATAAAACTATGACA
775 GACTAACAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
* * * * * *
43822600 CAATTTAGAAATCACATTAAATATTTACTTGAAAAAGCAAGTACCTCTAAGGGCCCTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * * * *
43822665 GACAATTGATGTTGCCTTCTTCACCGTTCTTCACCTATGCTACATGTCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* *
43822730 TTAATGCTCCTTTTCATTCTTTTTAATTTCATATCAGATATTAGAGTTTTTGAACCTTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * * * ** *
43822795 ATTGTGTGTTTGGCGTTTTTTTGTTTTTAAAGGGAGGAAGGAGTTTAAACACAGTGTTGAAATTT
196 ATTGTGTGTTTGGCG-TTTTTTGTTTGTAAAGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
*
43822860 ATAACATATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
260 ATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
* * * *
43822925 ATGCAAAGGCGTTGTACATATTCTATAGGAGTGTTGACTAACAGACTAACTGAACCTTCAGGGCT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
* * * *
43822990 CACTACTTATATAGAGGACTATGATGCAATTTAGAAATCGCATGAAATATTTACTTGAAAAGACA
390 AACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCA
* * * *
43823055 AGTATCTCTAAGGACCCGGTTGAGCAGACAATTGCTACTCCCTTCTTCACTTTTCTTCACCTATG
455 AGTATCTCTAAGGACCCTGTTGAGCAGACAATTGTTGCTCCCTTCTTCACCTTTCTTCACCTATG
** *
43823120 CTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTTATTGTT-ATTCTTTTTCATTCCATATCAGA
520 CTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTT-TTCATTCTTTTTCATTTCATATCAGA
* * * *
43823184 TATTAGAGTTTTCGAACCCTAGT-AAATATTGTGTGTTTGGCGTTTTTAGTTTGTAAGGGGTGGA
584 TATTAGAGTTTTTGAACCCTAGTGATA-ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGA
* *
43823248 AGAAGTCTAAGC------TT--AGTGT-T------T------G-------AAATGAAACTTAAGA
648 AGAAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAAGA
* * **
43823285 AGACTTTATTCATAAAGCCATCCTTTAATGCAAAGGCATTGTACATATTATATAGGAGTGTTGAC
713 AGACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGAC
* * *
43823350 TAACAGACTTATTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGGTA
778 TAACAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
* * * * * * *
43823403 TAATTTAGAAATCACATGAATTATTTACTTGAAAAGGGATGTATCTCTAAGGACCCTGTTGTGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* *
43823468 GACAATTGCTGCT-CGCTTCTTCACCTTTCTTCATCTATGTTACGTGCCTTCTTTCCTTTTTGTC
66 GACAATTGCTGCTGC-CTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
*
43823532 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATTAGATATTAGAGTTTTTGAACCCTAGTGAT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
* *
43823597 AATTGTGTGTTTGGCGTTTTTTGATTGTAAGAGGTG-GG-GGAAGTCTAAGCGTAGTGTTGAAGT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAA-AGG-GAGGAAGAAGTCTAAGCGTAGTGTTGAAGT
* * * * * *
43823660 TTATAAAAAATAAAAAAGAAAACATAAATAATACTTAAAAATACTTTA-TCGATTAAGCCATTCT
258 TTATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTC-ATTAAGCCATTCT
* * * *
43823724 TTAATGCAAAAGCGCTCTACATATTATATAGGAGTGTTGAGTAACAAACTAACTGAACCTTAACG
322 TTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACG
* * *
43823789 GCTCACTACTTATAT-----A--ATGATACAATTTGGAAATCGTATGAAATATTTACTTGAAGAG
387 GCTAACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAG
** * * *
43823847 GCAAGTATCTCTAAGGACGTTGTTGGGCAGCCAATTGTTGCTCCTTTCTTCACCTTTCTTCACCT
452 GCAAGTATCTCTAAGGACCCTGTTGAGCAGACAATTGTTGCTCCCTTCTTCACCTTTCTTCACCT
* *
43823912 ATGCTACGTCCCTTCTTTCCTTTTTGTCCTAAATGCTCCTTTTCATTCTTTTTCATTTCATATCA
517 ATGCTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCA
* *
43823977 GATATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGTGTTTTTTGTTTGTAATGGGAGG
582 GATATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGG
* * * * * *
43824042 AGGAAGTCTAAGCGTAGTGTTGATGTTTATAAAAAATAACAAAGAAAACAAAAATGATATTTAAT
647 AAGAAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAAG
* *
43824107 AAGACTTTATTCATTAAGCCATTCATTAATGCAAAGGCGTTGTACATATTATATAGGAGTGTTGA
712 AAGACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGA
* *
43824172 GTAACAGACTAACT-AATCCTTAACGGCTCACTACTTATATAGAGGACTATGATA
777 CTAACAGACTAACTGAA-CCTTAACGGCTAACTACTTATATAGAGGACTATGATA
* * * *
43824226 CTATTTAGAAATCGTATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGGGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* ** *
43824291 GACAATTG-TGGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGACCCTTCATTCCTTTTTGTC
66 GACAATTGCT-GCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
* * *
43824355 CTTAATGCACCTTTCCATTCTTTTTCATTTCATATCAGATATTATAGTTTTTGAACCCTAGTGAT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
*
43824420 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGG-AGAAAGTCTAAGCGTAGTGTTGAAGTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAAGGGAGGAAG-AAGTCTAAGCGTAGTGTTGAAGTT
* *
43824484 TATAACAAATAACAAA-AAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCATT
259 TATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTT
* * *
43824548 AATGCAAAGGCACTGTACATATTATATTA-GAGTGTTGACTAACAGAGTAACTGAACCTTAACAG
324 AATGCAAAGGCGCTGTACATATTATA-TAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGG
* * *
43824612 CTAACTACTTATACAAAGGACTATGATACAATTTAGAAATCGCATGAAATATTTACTTGAAAAGG
388 CTAACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGG
* * * * * *
43824677 CAATTATCTATAAGGGCCCTGTTGGGCAAACAATTGGTT-CTCCCTTCTTCACCTTTCTTCACAT
453 CAAGTATCTCTAAGGACCCTGTTGAGCAGACAATT-GTTGCTCCCTTCTTCACCTTTCTTCACCT
* * *
43824741 ATGCTACGTCCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTTATTTCTTATCA
517 ATGCTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCA
* *
43824806 GATATTAGAGTTTTTGAACCCTAGTGATAATTATGTGTTTGGCGTTTCTTGTTTGTAAGGGGAGG
582 GATATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGG
* *
43824871 -AGTAAGTCTAAGCGTAGTGTTGAAGTTTGTAACAAATAACAAAGAAAACATAAATGATACTTGA
647 AAG-AAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAA
* * * *
43824935 GAAGACTTTATTCATTAAGTCATTCATTAATGCAAAGGCGCTGTATATATTATATTA-TAGTGTT
711 GAAGACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATA-TAGGAGTGTT
* * * * *
43824999 GACTTACAGAGTAAATGAACCTTAAGGGCTAACTACTTATATAAAGGACTATGATA
775 GACTAACAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
* * * * *
43825055 CAGTTTGGAAATCACATGAGATATTTACTTGAAAAGGAAAGTATCTCTAAGGACCCTGTTGAGTA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * *
43825120 GACAATTGATGCTGCCTTCTTCACCTTTTTTCACCTATGCTACATGCCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * *
43825185 TTAATGCTCCTTTTCATTCTTTTTCATTTCAGATCAGATATTAGAGTTTTTGACCCCTAATGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
** * * * *
43825250 ATTGTGTGTTTGGAATTTTTTGTTAGT-AAGGCACGGAAGAAGTCTCAGCGAAGTGTTGAAGTTT
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAAGGGA-GGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* * *
43825314 ATAACAAATAACAAA-AAAATAGAAATGATACTTAAAAAGACTTTATTCA-TAATCCATTCTTTA
260 ATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
* * * * *
43825377 ATGCAAAGGCACTATACATATTATATCGGAGTGTTGACTAACATACTAACTAAACCTTAACGGCT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
* * *
43825442 AACTACTTATATAGAGGACTATGATACAATTTGGAAACCGAATGAAATTTTTACTTGAAAAGG-A
390 AACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCA
* * * *
43825506 CAGTATCTCTAAGGACCCTGTTGAGTAGACAATTGCTGCTCCATTCTTCACATTTCTTCACCTAT
455 -AGTATCTCTAAGGACCCTGTTGAGCAGACAATTGTTGCTCCCTTCTTCACCTTTCTTCACCTAT
* * * * *
43825571 GCTACGTGCCTTCTTTCCATTTTGTCCTTAATGCTCATTTTTATTCTTTTCCATTTTATATCAGA
519 GCTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGA
*
43825636 TATTAGAGTTTTTAAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAA
584 TATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAA
* * * * * *
43825701 GAATTTTAAGCGCAGTGTTGAAGTTTATAACAAATAACAAAGAAAATAAAAACGATACTTAAGAA
649 GAAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAAGAA
* * *
43825766 GACTTTCTTCATTAAGTCATTCTTTAATGTAAAGGCGCTGTACATATTATATAGGAGTGTTGACT
714 GACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACT
* ** * *
43825831 AACAGACTAACTGAACCTTAACGGCTAACTACTTATATATAAAATTATGACA
779 AACAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
* * * *
43825883 CAATTTAGAGATTGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGGCCCTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* *
43825948 AACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACATGCCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
*
43826013 TTAATGCT-CTCTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTAAACCCTAGTGAT
131 TTAATGCTCCT-TTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
* * * * *
43826077 AATTGTGTGTTTGGCATTTTTTGTTTGTAAGGGGAGGAAGAAATCTAAGCGCAGTGTTGAAATTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAAGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* *
43826142 ATAACAAATAACAAAGAAAACAAAAATTATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
260 ATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
*** * *
43826207 ATGCAAAGGTAATGTACATATTATATCGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGTT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
* * * * *
43826272 AACTACTTATACAGAGGACTATGATACAATTTGGAAATCGCTTGAACTATTTATTTGAAAAGGGA
390 AACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCA
* ** *** * *
43826337 TGTATCTCTTAA-GATTCTGTTTTCCAGACAATTGTTGCTGCCTTCTTCACCTTTCTTCACCTAC
455 AGTATCTC-TAAGGACCCTGTTGAGCAGACAATTGTTGCTCCCTTCTTCACCTTTCTTCACCTAT
* * *
43826401 GCTACTTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCCTTTCATTCTTTTTCATTTCATATCAGT
519 GCTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGA
* * * *
43826466 TATTAGAGTTTTTGAACCCTAGTGGTAATTGTATGTTTGGC-ATTTTT-TTTGTATGGGGAGGAA
584 TATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAA
* * * * * *
43826529 GAATTCTAAGTGCAGTGTTGAAGTTTATAACAAATAACAAAGAAAATAGAAATGGT-CTTAAGAA
649 GAAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAAGAA
** * * *
43826593 GACCATATTCATT-AGTCCATTCTTTAATGCAAAGGCACTGTACATGTTATATCA-CAGTGTTGA
714 GACTTTATTCATTAAG-CCATTCTTTAATGCAAAGGCGCTGTACATATTATAT-AGGAGTGTTGA
** *
43826656 -TAAACAGACTAACAAAACCTTAACGGCTAACTACTAATATAGAGGACTATGATA
777 CT-AACAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
* * * * * * *
43826710 CAATTTGGAAATCGCATGAACTATTTATTTTAAAAGGGAAGTATCTCTAAGGATCCTATTGTGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* *
43826775 GACAATTGCTACTGCCTTGTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * * *
43826840 TTAATGCTCCTTTTCATTATTTTTCATTTCATATAAGATATTAGAGTTTTTTACCCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* ** * * * *
43826905 ATTGTGTATTTTACGTTTTTTATTTGTAAGGGGAGGAAGAAGTCTAAGCATAGTGCTGAAGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAAGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
*
43826970 TAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTAATCATTAAGCCATTCTTTAA
261 TAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
* * * * * *
43827035 TGTAAAGGCGTTGTA-ATATTATATCGGAGTGCTGACTAATAGACTAACTAAACCTTAACGGCTA
326 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTA
* ** * *
43827099 ACTACTAATATAGAGGACTATGATACAATTTGGAAATCGCATGAACCATTTATTTGAAAAGGGAA
391 ACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAA
* * * * * * * *
43827164 GTATCTTTAAGGATCCTATTGTGCAGACAATTGCTGCTTCCTTCTTCACCTTTCTTCACCTCTTC
456 GTATCTCTAAGGACCCTGTTGAGCAGACAATTGTTGCTCCCTTCTTCACCTTTCTTCACCTATGC
* * * *
43827229 TACGTGCCTTCTTTCCTTTTTGTCCTTAATTCTCATTTTTATTCTTTTTCATTCCATATCAGATA
521 TACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATA
*
43827294 TTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGTGGAAGA
586 TTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGA
* * * * *
43827359 AGTCTACGCTTAGTGTTGAAGTTTATAACAAATAACAATGAAAACATAAATGAAACTTAGGAAGA
651 AGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGA
* *
43827424 CTTTATTCATAAAGTCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAA
716 CTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAA
* *
43827489 CAGACTAACTGAACCTTAACGGCTAACTACCTGTATAGAGGACTATGATA
781 CAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
* * * * *
43827539 CAATTTGGAAATCGCATGAATTATTTACTT-AAAGGGGGATGTATCTCTAAGGACCCTGTTGTGC
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAA-AGGCAAGTATCTCTAAGGACCCTGTTGAGC
* *
43827603 AGACAATTTCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTT-CTTTTT-TC
65 AGACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
**
43827666 CTTAATGCAACTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
* * * * * *
43827731 AATTGTGTGTTTTGCATTTTTTGTTTGTAAGGGGAGCAAGAAGTTTAAGCGCAGTGTTGAAGTTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAAGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* * * * **
43827796 ATAACAAATTACAAAGAAAACATAAATGATATTTAAGAATACTTTATTCATTAAGCTGTTCTTTA
260 ATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
* ** *
43827861 ATGCAAAGGCACTGTACATATTATATAATAGTGTTGACTAACAGACTAACTAAACCTTAACGGCT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
* * * * * *
43827926 AACTACTTATATATAGCACTAAGATACAAATTGTAAATCGCATGAAATATTTACTTAAAAAGGCA
390 AACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCA
* ** *
43827991 AGTAACTCTAAGGACCCTGTTGAGTTGACAATTGCTGCTCCCTTCTTCACC--T-TT---CT-T-
455 AGTATCTCTAAGGACCCTGTTGAGCAGACAATTGTTGCTCCCTTCTTCACCTTTCTTCACCTATG
*
43828048 C-AC-T---TTC--T--TTTTTGTCCTTAATGCTCCTTTTTATTCTTTTTCATTTCATATCAGAT
520 CTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGAT
* * *
43828104 GTTAGAATTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTATTTGTAAGGGGAGGAAG
585 ATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAG
* * * * * *
43828169 AAGTCTAAGCGCAGTATTCATGTTTATAATAAATAAGAAAGAAAACATAAATGATACTTAAGAAG
650 AAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAG
* * * *
43828234 ACTTTATTCATTAAGCCATTCTTTAATGCAAAGGTGCTGTGCATATTATATCGGAGTGCTGACTA
715 ACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTA
* *
43828299 ACAGACTAACTAAACCTTAAAGGCTAACTACTTATATAGAGGACTATGATA
780 ACAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
*
43828350 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTGAGGACCCTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * *
43828415 GACAATTGCTGCTCCCTTCTGCTCCCTTATTCACCTTTCTTCACCTCTTCTACGTGCCTTCTTTC
66 GACAATTGCTG-------CTG---CCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTC
* * * * * * *
43828480 CTTTTCGTCGTTAAGGCTCATTTTTATTCTTTTTCATTCCATATCAGATATTGGAGTTTTTGAAC
121 CTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAAC
* * * **
43828545 CCTAGTGATAATTGTGTGTTTGGCATTTTTAT-TTTGTAATGAGAGGAAGAAGTCTAAGTTTAGT
186 CCTAGTGATAATTGTGTGTTTGGCGTTTTT-TGTTTGTAAAGGGAGGAAGAAGTCTAAGCGTAGT
* * * * * *
43828609 GTTGAAGTTTATTACAAATAACAAAGAAAACATAAATGAAACTTAAAAAGTCTTTATTCATAAAG
250 GTTGAAGTTTATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAG
* *
43828674 CCATTCTTTAATGCAAAGGCGCTATACATATTATATAGGAGTGTCGACTAACAGACTAACTGAAC
315 CCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAAC
* *
43828739 CTTAACGGCTAACTACTTATATAGAGGACTATGATACAATTTGAAAATCGCATGAATTATTTACT
380 CTTAACGGCTAACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACT
*
43828804 TGAAAAGGCAAGTATCTCTAAGGACCCTATTGTA-CAGACAATTGTTGCTCCCTTCTTCA-CTTT
445 TGAAAAGGCAAGTATCTCTAAGGACCCTGTTG-AGCAGACAATTGTTGCTCCCTTCTTCACCTTT
*
43828867 CTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGACCTTAATGCTCCTTTTCATTCTTTTTCATT
509 CTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATT
* * * * *
43828932 TCATATCAAATATTAGAGTTTTTGACCCCAAGTGATAATTGTGTGTTTTGCATTTTTTGTTTGTA
574 TCATATCAGATATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTA
* * *
43828997 AGGAGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAAGAGAAATGA
639 AGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGA
* * *
43829062 TACTTAAGAAAACTTTATTGATTAAGCCATTCTTTAATGCAAAAGCGCTGTACATATTATATAGG
704 TACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGG
* * * *
43829127 AGTGTTGACTAACAAACTAACTGAACCTTAACGACTCACTACTTATATAGAGGACTATGACA
769 AGTGTTGACTAACAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
* * * *
43829189 CAATTTCGAAATCACATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGGGTA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * * **
43829254 GACAATTGCTGCTCCCTTCTTCATCTTTCTTTACCTATGCTACGTTTCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * *
43829319 TTAATGCTCGTTTTCATTCTTTTTCATTGCATATCAAATATTAGAGTTTTTGAACCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * * *
43829384 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAATGGTGGAGGAAGTCTAAGCGTAGTGTTGAAGTTTT
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAAGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* * * * * *
43829449 TAA-AATATAAAAAAGAAAACATAAATAATACTTAAAAAGACTTTATCCATTAAGCCATTCATTA
261 TAACAA-ATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
*** * * *
43829513 ATGCAAAGGTATTGTACATATTATATAAGAGTGTTGACTAACAGACTAACTGAACCTTAATGTCT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
*** * * *
43829578 AACTACTTATATAGAGGACTATGATACAATTCAAAAATCGCATCAAATTTTTACTTAAAAAGGCA
390 AACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCA
* * *
43829643 AGTATCTCTAAGGACCCTGTTGAGTAGACAATTGTTGTTCTCTTCTTCACCTTTCTTCACCTATG
455 AGTATCTCTAAGGACCCTGTTGAGCAGACAATTGTTGCTCCCTTCTTCACCTTTCTTCACCTATG
* * * * * * *
43829708 CTACGTACCTTCTTTCTTTTTTATCCTTGATGCTCCTTTTTATTCCTTTTCATTTCATATTAGAT
520 CTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGAT
*
43829773 ATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGTGTTTTTTGTTTGTAAGGGGAGGAAG
585 ATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAG
* * *
43829838 AAGTCTAAGCGCAGTGTTGATGTTTATAACAAATAACAAAGAAAACATAAATGATACTTTAGAAG
650 AAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAG
43829903 ACTTTATTCATTAAGCCATTCTTTAAT
715 ACTTTATTCATTAAGCCATTCTTTAAT
43829930 AACCAAATTA
Statistics
Matches: 13074, Mismatches: 1481, Indels: 431
0.87 0.10 0.03
Matches are distributed among these distances:
794 2 0.00
795 218 0.02
796 2 0.00
797 1 0.00
801 4 0.00
802 157 0.01
803 312 0.02
804 2 0.00
809 197 0.02
810 2 0.00
811 331 0.03
812 3 0.00
813 166 0.01
815 5 0.00
816 3 0.00
817 1 0.00
818 4 0.00
819 110 0.01
820 60 0.00
821 310 0.02
822 126 0.01
823 897 0.07
824 6 0.00
825 65 0.00
826 464 0.04
827 898 0.07
828 3134 0.24
829 2036 0.16
830 2221 0.17
831 738 0.06
832 68 0.01
833 2 0.00
835 3 0.00
836 192 0.01
837 1 0.00
839 333 0.03
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.36
Consensus pattern (830 bp):
CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
ATTGTGTGTTTGGCGTTTTTTGTTTGTAAAGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
TAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTA
ACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAA
GTATCTCTAAGGACCCTGTTGAGCAGACAATTGTTGCTCCCTTCTTCACCTTTCTTCACCTATGC
TACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATA
TTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGA
AGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGA
CTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAA
CAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
Found at i:43833716 original size:17 final size:18
Alignment explanation
Indices: 43833654--43833719 Score: 73
Period size: 18 Copynumber: 3.8 Consensus size: 18
43833644 CGATTATACT
* *
43833654 TGAT-AAATTATAAAGCC
1 TGATAAAATGATAATGCC
* *
43833671 TGATAAAACGATAATGTC
1 TGATAAAATGATAATGCC
*
43833689 TGATAAAATGACAATGCC
1 TGATAAAATGATAATGCC
43833707 TGAT-AAATGATAA
1 TGATAAAATGATAA
43833720 ATTATAAATG
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
17 12 0.30
18 28 0.70
ACGTcount: A:0.47, C:0.11, G:0.15, T:0.27
Consensus pattern (18 bp):
TGATAAAATGATAATGCC
Found at i:43834866 original size:51 final size:51
Alignment explanation
Indices: 43834790--43835001 Score: 312
Period size: 51 Copynumber: 4.3 Consensus size: 51
43834780 CGGATCACAT
* *
43834790 TTATCACTTGTCACTTATCCCTGATCAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
*
43834841 TTATCACTTGTTACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
43834892 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
* * *
43834943 -T-T-A----TCACTTGTCACTGATCAGATAAGTGCAACTAAAGCTACTAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
*
43834987 TTATCACTTATCACT
1 TTATCACTTGTCACT
43835002 GATCAGAAGT
Statistics
Matches: 147, Mismatches: 7, Indels: 14
0.88 0.04 0.08
Matches are distributed among these distances:
44 38 0.26
45 1 0.01
46 1 0.01
47 1 0.01
48 1 0.01
49 1 0.01
50 1 0.01
51 103 0.70
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.33
Consensus pattern (51 bp):
TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
Found at i:43834901 original size:44 final size:44
Alignment explanation
Indices: 43834853--43835008 Score: 213
Period size: 44 Copynumber: 3.4 Consensus size: 44
43834843 ATCACTTGTT
43834853 ACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTC
1 ACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC-T-T-A----TC
43834904 ACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATC
1 ACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATC
* * *
43834948 ACTTGTCACTGATCAGATAAGTGCAACTAAAGCTACTACTTATC
1 ACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATC
*
43834992 ACTTATCACTGATCAGA
1 ACTTGTCACTGATCAGA
43835009 AGTACTCAAA
Statistics
Matches: 101, Mismatches: 4, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
44 59 0.58
48 1 0.01
49 1 0.01
50 1 0.01
51 39 0.39
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (44 bp):
ACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATC
Found at i:43834906 original size:102 final size:95
Alignment explanation
Indices: 43834790--43835006 Score: 308
Period size: 95 Copynumber: 2.2 Consensus size: 95
43834780 CGGATCACAT
*
43834790 TTATCACTTGTCACTTATCCCTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTTAC
1 TTATCACTTGTCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT--C-----AC
* *
43834855 TTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
59 TTGTCACTGATCAGATAAGTGCAACTAAAGCTACCAC
*
43834892 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCAC
1 TTATCACTTGTCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCAC
*
43834957 TGATCAGATAAGTGCAACTAAAGCTACTAC
66 TGATCAGATAAGTGCAACTAAAGCTACCAC
* *
43834987 TTATCACTTATCACTGATCA
1 TTATCACTTGTCACTTATCA
43835007 GAAGTACTCA
Statistics
Matches: 107, Mismatches: 8, Indels: 7
0.88 0.07 0.06
Matches are distributed among these distances:
95 53 0.50
100 1 0.01
102 53 0.50
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (95 bp):
TTATCACTTGTCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCAC
TGATCAGATAAGTGCAACTAAAGCTACCAC
Found at i:43837753 original size:54 final size:54
Alignment explanation
Indices: 43837695--43837829 Score: 180
Period size: 54 Copynumber: 2.5 Consensus size: 54
43837685 CTGACTTGGT
*
43837695 CACACGGCCAGTCACACGCCCGTGTGTCCAGCCCGTGTAACTCTCTGACTTAAC
1 CACACGGCCAGTCACACGCCCGTGTGTCCAGCCCGTGTAACTCACTGACTTAAC
* * * **
43837749 CACACGGCCAGTCACACGTCTGTGTGTCCAGCCCGTGTAACTCACTGTCTTGGC
1 CACACGGCCAGTCACACGCCCGTGTGTCCAGCCCGTGTAACTCACTGACTTAAC
* * * *
43837803 CACATGGCCTGCCACATGCCCGTGTGT
1 CACACGGCCAGTCACACGCCCGTGTGT
43837830 GAGACCGTGT
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 69 1.00
ACGTcount: A:0.18, C:0.37, G:0.23, T:0.22
Consensus pattern (54 bp):
CACACGGCCAGTCACACGCCCGTGTGTCCAGCCCGTGTAACTCACTGACTTAAC
Found at i:43838939 original size:42 final size:43
Alignment explanation
Indices: 43838859--43838983 Score: 155
Period size: 43 Copynumber: 2.9 Consensus size: 43
43838849 CTTACGTGTT
* * *
43838859 ATCATATATCGATGCCACTATCCAAGACAAGGTCTTACACGAA
1 ATCATATATCGATGCCAATGTCCAAGACATGGTCTTACACGAA
* * *
43838902 ATCATATAT-GATTCCAATGTCCTAGACATGGTCTTACACGTA
1 ATCATATATCGATGCCAATGTCCAAGACATGGTCTTACACGAA
* *
43838944 ATC-TCTAATCGATGCCAATGTCCCAGACATGGTCTTACAC
1 ATCATAT-ATCGATGCCAATGTCCAAGACATGGTCTTACAC
43838984 AATATCACAC
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
41 2 0.03
42 32 0.45
43 37 0.52
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (43 bp):
ATCATATATCGATGCCAATGTCCAAGACATGGTCTTACACGAA
Found at i:43840985 original size:11 final size:11
Alignment explanation
Indices: 43840944--43840987 Score: 54
Period size: 11 Copynumber: 4.1 Consensus size: 11
43840934 TTACTAAATA
43840944 TTGTGCAATTT
1 TTGTGCAATTT
*
43840955 TTTTGCAATTT
1 TTGTGCAATTT
* *
43840966 TAGT-AAATTT
1 TTGTGCAATTT
43840976 TTGTGCAATTT
1 TTGTGCAATTT
43840987 T
1 T
43840988 AATGCATTTG
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
10 8 0.31
11 18 0.69
ACGTcount: A:0.23, C:0.07, G:0.14, T:0.57
Consensus pattern (11 bp):
TTGTGCAATTT
Found at i:43840996 original size:21 final size:21
Alignment explanation
Indices: 43840950--43840990 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
43840940 AATATTGTGC
* *
43840950 AATTTTTTTGCAATTTTAGTA
1 AATTTTTGTGCAATTTTAATA
43840971 AATTTTTGTGCAATTTTAAT
1 AATTTTTGTGCAATTTTAAT
43840991 GCATTTGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.05, G:0.10, T:0.56
Consensus pattern (21 bp):
AATTTTTGTGCAATTTTAATA
Found at i:43845163 original size:106 final size:107
Alignment explanation
Indices: 43845044--43845277 Score: 276
Period size: 106 Copynumber: 2.2 Consensus size: 107
43845034 CGGCATCAAA
** * *
43845044 ATACGAAAAAAGTAAAAAAAAAATTGGTAGTGGTCTACCAATTGCCGGCACCATC-TTTATTAGA
1 ATACGAAAAAAGTAAAAAAAAAATTGGTAGTGACCTACCAATGGCCGGCACCA-CGTTTATGAGA
*
43845108 TAAA-AAAATTTTACTTTTTTCGTGTCAATGGCAA-ACACCAGT
65 GAAATAAAATTTTACTTTTTTCGTGTCAATGG-AAGACACCAGT
** * * *
43845150 ATACGAAAAAAGTAAAAAAAATTTTGGTGGTGACCTGCCAATGGCCGGCACCACGTTTATGGGAG
1 ATACGAAAAAAGTAAAAAAAAAATTGGTAGTGACCTACCAATGGCCGGCACCACGTTTATGAGAG
**** * *
43845215 AAATTTTTTTTTACTTTTTTTGTGTCAATGGAAGGCACCAGT
66 AAATAAAATTTTACTTTTTTCGTGTCAATGGAAGACACCAGT
*
43845257 ATAAGAAAAAAGTAAAAAAAA
1 ATACGAAAAAAGTAAAAAAAA
43845278 TTCATATACT
Statistics
Matches: 108, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
105 1 0.01
106 58 0.54
107 49 0.45
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (107 bp):
ATACGAAAAAAGTAAAAAAAAAATTGGTAGTGACCTACCAATGGCCGGCACCACGTTTATGAGAG
AAATAAAATTTTACTTTTTTCGTGTCAATGGAAGACACCAGT
Found at i:43845689 original size:110 final size:112
Alignment explanation
Indices: 43845490--43845692 Score: 279
Period size: 110 Copynumber: 1.8 Consensus size: 112
43845480 AAAAAATTTA
* ***
43845490 ACTTTTTTCGTATACTGGTGCCTGCCATTGACACGAAAAAAGTAAAAAAAAATATCTTTTAAAGG
1 ACTTTTTTCGTATACTGGTGCCTGCCATTGACACGAAAAAAATAAAAAAAAATATCCAATAAAGG
43845555 TGGTGCTGGCCATTGGAAGGCCACCACCAAAAAAAAAAATTTTTTTT
66 TGGTGCTGGCCATTGGAAGGCCACCACCAAAAAAAAAAATTTTTTTT
* * * *
43845602 ACTTTTTTTGTATACTGGTGCGTGTCATTGACA-TAAAAAAATAAAAAAAAAT-TCCAATAAAGG
1 ACTTTTTTCGTATACTGGTGCCTGCCATTGACACGAAAAAAATAAAAAAAAATATCCAATAAAGG
*
43845665 TGGTG-TCGGTCATTGGCAA-GCCACCACC
66 TGGTGCT-GGCCATTGG-AAGGCCACCACC
43845693 GAAATTTTTT
Statistics
Matches: 80, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
109 1 0.01
110 30 0.38
111 19 0.24
112 30 0.38
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (112 bp):
ACTTTTTTCGTATACTGGTGCCTGCCATTGACACGAAAAAAATAAAAAAAAATATCCAATAAAGG
TGGTGCTGGCCATTGGAAGGCCACCACCAAAAAAAAAAATTTTTTTT
Found at i:43846627 original size:102 final size:103
Alignment explanation
Indices: 43846355--43846636 Score: 325
Period size: 102 Copynumber: 2.6 Consensus size: 103
43846345 TCTTTATACG
* * * *
43846355 AAAAAAAAATTTCGGGTGTTAGTCTGTCAATGGCCGGCACCCCCTTTCTACAATAATTTTTTTTT
1 AAAAAAAAATTT-GGG-G-TGGCCTGGCAATGGCCGGCACCCCCTTTATAC---AA-TTTTTTTT
* * * *
43846420 TACTTTTGGTGTGTCAATGGCCAGCACCAGTATATGAAAAAAGTAAA
59 TACTTTTGGTCTGTCAATAGCCAACACCAGTATACGAAAAAAGT--A
* *
43846467 AAAAAAAAACTTTTTGGGGTGGCCTGGCAATGGCCGGCACCCCTTTTATACATTTTTTTTTTACT
1 AAAAAAAAA---TTTGGGGTGGCCTGGCAATGGCCGGCACCCCCTTTATACAATTTTTTTTTACT
*
43846532 TTTGGTCTGTCAATAGCGAACA-CATGTATACGAAAAAAGT-
63 TTTGGTCTGTCAATAGCCAACACCA-GTATACGAAAAAAGTA
*
43846572 AAAAAAAAATTTGGGGTGGCCTGGCAATGGTCGGCACCCCCTTTATACAATTTTTTTTTACTTTT
1 AAAAAAAAATTTGGGGTGGCCTGGCAATGGCCGGCACCCCCTTTATACAATTTTTTTTTACTTTT
43846637 TTCGTATACT
Statistics
Matches: 152, Mismatches: 14, Indels: 18
0.83 0.08 0.10
Matches are distributed among these distances:
102 53 0.35
105 9 0.06
107 2 0.01
108 44 0.29
109 1 0.01
112 36 0.24
113 1 0.01
114 3 0.02
115 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.34
Consensus pattern (103 bp):
AAAAAAAAATTTGGGGTGGCCTGGCAATGGCCGGCACCCCCTTTATACAATTTTTTTTTACTTTT
GGTCTGTCAATAGCCAACACCAGTATACGAAAAAAGTA
Found at i:43850047 original size:21 final size:22
Alignment explanation
Indices: 43850023--43850069 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
43850013 TTTGAAAGAC
43850023 AAATATGCAAATATATATATA-
1 AAATATGCAAATATATATATAT
* **
43850044 AAATGTTTAAATATATATATAT
1 AAATATGCAAATATATATATAT
43850066 AAAT
1 AAAT
43850070 GTATATATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.55, C:0.02, G:0.04, T:0.38
Consensus pattern (22 bp):
AAATATGCAAATATATATATAT
Found at i:43851896 original size:16 final size:15
Alignment explanation
Indices: 43851873--43851915 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
43851863 TAATAATTAC
43851873 ATTATTTAAAAATAA
1 ATTATTTAAAAATAA
*
43851888 ATATATTTATTAAATAA
1 AT-TATTTA-AAAATAA
*
43851905 ATTATGTAAAA
1 ATTATTTAAAA
43851916 TGATAAAGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
15 4 0.17
16 11 0.48
17 8 0.35
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (15 bp):
ATTATTTAAAAATAA
Found at i:43854269 original size:23 final size:23
Alignment explanation
Indices: 43854224--43854278 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 23
43854214 GCATGTCAAA
*
43854224 ATTTAGTACTTTAATAAATAATA-
1 ATTTATTA-TTTAATAAATAATAT
43854247 ATTATATTATTTAA-AAATAAATAT
1 ATT-TATTATTTAATAAAT-AATAT
43854271 ATTTATTA
1 ATTTATTA
43854279 AAGAAATTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
22 4 0.14
23 17 0.61
24 7 0.25
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (23 bp):
ATTTATTATTTAATAAATAATAT
Found at i:43854279 original size:19 final size:20
Alignment explanation
Indices: 43854233--43854280 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
43854223 AATTTAGTAC
* *
43854233 TTTAATAAATAATAATTATA
1 TTTATTAAATAATAAATATA
43854253 -TTATTTAAA-AATAAATATA
1 TTTA-TTAAATAATAAATATA
43854272 TTTATTAAA
1 TTTATTAAA
43854281 GAAATTATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
TTTATTAAATAATAAATATA
Found at i:43857327 original size:22 final size:22
Alignment explanation
Indices: 43857301--43857349 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
43857291 TTAAATGATT
*
43857301 ATAAACAAATA-ACTAATAATAA
1 ATAAACAAATATACCAA-AATAA
* *
43857323 ATAAATAACTATACCAAAATAA
1 ATAAACAAATATACCAAAATAA
43857345 ATAAA
1 ATAAA
43857350 TATGGGTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 19 0.83
23 4 0.17
ACGTcount: A:0.67, C:0.10, G:0.00, T:0.22
Consensus pattern (22 bp):
ATAAACAAATATACCAAAATAA
Found at i:43858291 original size:22 final size:23
Alignment explanation
Indices: 43858266--43858314 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
43858256 GAATGTATAT
*
43858266 AAAAGAAAA-AATAAAAATATTG
1 AAAAGAAAATAACAAAAATATTG
* *
43858288 AAAAGAAAATCACATAAATATTG
1 AAAAGAAAATAACAAAAATATTG
43858311 AAAA
1 AAAA
43858315 CAGAAAAACG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.69, C:0.04, G:0.08, T:0.18
Consensus pattern (23 bp):
AAAAGAAAATAACAAAAATATTG
Found at i:43859410 original size:44 final size:42
Alignment explanation
Indices: 43859332--43859445 Score: 111
Period size: 44 Copynumber: 2.6 Consensus size: 42
43859322 TTTGCTATCT
** * * *
43859332 TTAATCTGTTCCACTATAACTTCAAGGAGATAGGATCCATCATC
1 TTAATCTGTTCCACTGCAATTTC-AGGAGATAGGATCAAT-AAC
* *
43859376 TTAATCTGTTCCACTGCAATTTCAGGCAGGTAGGATTAATAAC
1 TTAATCTGTTCCACTGCAATTTCAGG-AGATAGGATCAATAAC
* *
43859419 TTCAATATGCTCCACTGCAATTTCAGG
1 TT-AATCTGTTCCACTGCAATTTCAGG
43859446 GGGATAAGAC
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
43 7 0.12
44 52 0.88
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (42 bp):
TTAATCTGTTCCACTGCAATTTCAGGAGATAGGATCAATAAC
Found at i:43859586 original size:312 final size:312
Alignment explanation
Indices: 43859198--43860735 Score: 2481
Period size: 312 Copynumber: 4.9 Consensus size: 312
43859188 AGATTGGCTT
* * * * * *
43859198 AACCTTCTCCACTGAAACTTCAGGGAGATAAGGTTTGATATGATCTACTCTACTGCAACTTCAG-
1 AACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
* * * *
43859262 GAAGATGAGATCTGTTATGATAGATTTAATCTATTCTACTGCAAGTTCAGGGAAATACGATTTGC
66 G-AGACGAGATCTGTTATGGTAGATTTAATCTGTTCTACTGCAACTTCAGGGAAATACGATTTGC
* ** *
43859327 TATCTTTAATCTGTTCCACTATAACTTCAAGGAGATAGGATCCATCATCTTAATCTGTTCCACTG
130 TATCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATCCATCATCTTAATCTGTTCCACTG
* * * * *
43859392 CAATTTCAGGCAGGTAGGATTAATAACTTCAATATGCTCCACTGCAATTTCAGGGGGATAAGACT
195 CAACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATAAGACT
*
43859457 TGTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTTCTATTTC
260 TGTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATTTC
* * *
43859510 AACCTGCTCTACTGCAACTTCAAAGAGATAAAGTTTGATATGATATGCTCTACTGCAACTTCAGA
1 AACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
43859575 GAGACGAGATCTGTTATGGTAGATTTAATCTGTTCTACTGCAACTTCAGGGAAATACGATTTGCT
66 GAGACGAGATCTGTTATGGTAGATTTAATCTGTTCTACTGCAACTTCAGGGAAATACGATTTGCT
** *
43859640 ATCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATCCATCATCTTAATCCATTCCACTAC
131 ATCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATCCATCATCTTAATCTGTTCCACTGC
*
43859705 AACTTTAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATAAGACTT
196 AACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATAAGACTT
**
43859770 GTATCTTCAACTTGCCCCACTGCAACTTCATATGGATAAGGTTTGCTATTTC
261 GTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATTTC
43859822 AACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
1 AACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
* *
43859887 GAGATGAGATCTGTTATGGTAGATTTACTCTGTTCTACTGCAACTTCAGGGAAATACGATTTGCT
66 GAGACGAGATCTGTTATGGTAGATTTAATCTGTTCTACTGCAACTTCAGGGAAATACGATTTGCT
* * * *
43859952 ATCTTTAATCTGCTCCACTGAAACTTTAGGGAGATATGATCCATCATCTTAATCTGTTCCACTAC
131 ATCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATCCATCATCTTAATCTGTTCCACTGC
*
43860017 AACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATAAAACTT
196 AACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATAAGACTT
43860082 GTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATTTC
261 GTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATTTC
* *
43860134 AACCTGCTCTACTGTAACTTTAGAGAGATAAAGTTTGATATGATCTGTTCTACTGCAACTTCAGA
1 AACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
* * *
43860199 GAGACGAGATCTGTTATGGTAGATTTAATCTATTCCACTACAACTTCAGGGAAATACGATTTGCT
66 GAGACGAGATCTGTTATGGTAGATTTAATCTGTTCTACTGCAACTTCAGGGAAATACGATTTGCT
* * * *
43860264 ATCTTTAATTTGCTCCACTGCAACTTCAAGGAGATAGGATCCATCATGTTAAT-TCGCTCCACTG
131 ATCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATCCATCATCTTAATCT-GTTCCACTG
* * * * * *
43860328 CAACTTCAAGGATGTAAGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGGAAAATAAGACT
195 CAACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATAAGACT
43860393 TGTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATTTC
260 TGTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATTTC
*
43860446 AACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGACCTGCTCTACTGCAACTTCAGA
1 AACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
* *
43860511 GAGACGAGATCTGTTATGGTAGATTTAATCTGTTCCACTGCAACTTCAGGAAAATACGATTTGCT
66 GAGACGAGATCTGTTATGGTAGATTTAATCTGTTCTACTGCAACTTCAGGGAAATACGATTTGCT
* *
43860576 ATCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATCCATCATTTTAAT-TCGCTCCACTG
131 ATCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATCCATCATCTTAATCT-GTTCCACTG
*
43860640 CAACTTCAGGGAGGTAGGATTAGTAACTTCAATATGCTCCACTGCAACTTT-AGGGAGATAAGAC
195 CAACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAA-TTTCAGGGAGATAAGAC
* *
43860704 TTGTGTCTTCAACTTGCCCTACTGCAACTTCA
259 TTGTATCTTCAACTTGCCCCACTGCAACTTCA
43860736 GAGAGATAAA
Statistics
Matches: 1141, Mismatches: 82, Indels: 6
0.93 0.07 0.00
Matches are distributed among these distances:
311 1 0.00
312 1137 1.00
313 3 0.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (312 bp):
AACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
GAGACGAGATCTGTTATGGTAGATTTAATCTGTTCTACTGCAACTTCAGGGAAATACGATTTGCT
ATCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATCCATCATCTTAATCTGTTCCACTGC
AACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATAAGACTT
GTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATTTC
Found at i:43860639 original size:268 final size:267
Alignment explanation
Indices: 43860363--43861053 Score: 989
Period size: 268 Copynumber: 2.6 Consensus size: 267
43860353 ACTTCAATCT
* ** * * *
43860363 GCTCCACTGCAACTTCAGGAAAATAAGACTT-GTATCTTCAACT-TGCCCCACTGCAACTTCATG
1 GCTCCACTGCAACTTCAGGGAGGTAGGA-TTAGTAACTTCAA-TATGCTCCACTGCAACTTCA-G
** * *
43860426 GGGATAAGGTTTGCTAT-TTCAACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGAC
63 GGGATAAGACTTG-TATCTTCAACTTGCCCTACTGTAACTTCAGAGAGATAAAGTTTGATATGAC
*
43860490 CTGCTCTACTGCAACTTCAGAGAGACGAGATCTGTTATGGTAGATTTAATCTGTTCCACTGCAAC
127 CTGCTCTACTGCAACTTCAGAGAGACGAGATCTGTTATGGTAGATTTAATCTATTCCACTGCAAC
*
43860555 TTCAGGAAAATACGATTTGCTATCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATCCAT
192 TTCAGGAAAATACGATTTGCTATCTTTAATCTGCTCCACTGCAAATTCAGGGAGATAGGATCCAT
43860620 CATTTTAATTC
257 CATTTTAATTC
*
43860631 GCTCCACTGCAACTTCAGGGAGGTAGGATTAGTAACTTCAATATGCTCCACTGCAACTTTAGGGA
1 GCTCCACTGCAACTTCAGGGAGGTAGGATTAGTAACTTCAATATGCTCCACTGCAACTTCAGGG-
* * * *
43860696 GATAAGACTTGTGTCTTCAACTTGCCCTACTGCAACTTCAGAGAGATAAAGTTTGATATGATCTA
65 GATAAGACTTGTATCTTCAACTTGCCCTACTGTAACTTCAGAGAGATAAAGTTTGATATGACCTG
*
43860761 CTCTACTGCAACTTCAGAGAGACGAGATCTGTTATGGTAGATTTAATCTATTCCACTGCAACTTT
130 CTCTACTGCAACTTCAGAGAGACGAGATCTGTTATGGTAGATTTAATCTATTCCACTGCAACTTC
* *
43860826 AGGGAAATACGATTTGCTATCTTTAATCTGCTCCATTGCAAATTCAGGGAGATAGGATCCATCAT
195 AGGAAAATACGATTTGCTATCTTTAATCTGCTCCACTGCAAATTCAGGGAGATAGGATCCATCAT
*
43860891 TTTAATTT
260 TTTAATTC
* *
43860899 GCTCCACTGCAACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGAGA
1 GCTCCACTGCAACTTCAGGGAGGTAGGATTAGTAACTTCAATATGCTCCACTGCAACTTCAG-GG
* *
43860964 GATAAGACTTGTATCTTCAACTTGCGCC-ACTGTAACTTCATG-G-GTATAAGGTTTTCTATATC
65 GATAAGACTTGTATCTTCAACTTGC-CCTACTGTAACTTCA-GAGAG-ATAAAG-TTT-GATAT-
* *
43861026 AACTTGCTCTACTGCAACTTCAGAGAGA
124 GACCTGCTCTACTGCAACTTCAGAGAGA
43861054 TAAAGTTTGA
Statistics
Matches: 380, Mismatches: 32, Indels: 19
0.88 0.07 0.04
Matches are distributed among these distances:
267 9 0.02
268 336 0.88
269 7 0.02
270 4 0.01
271 24 0.06
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (267 bp):
GCTCCACTGCAACTTCAGGGAGGTAGGATTAGTAACTTCAATATGCTCCACTGCAACTTCAGGGG
ATAAGACTTGTATCTTCAACTTGCCCTACTGTAACTTCAGAGAGATAAAGTTTGATATGACCTGC
TCTACTGCAACTTCAGAGAGACGAGATCTGTTATGGTAGATTTAATCTATTCCACTGCAACTTCA
GGAAAATACGATTTGCTATCTTTAATCTGCTCCACTGCAAATTCAGGGAGATAGGATCCATCATT
TTAATTC
Found at i:43860684 original size:580 final size:580
Alignment explanation
Indices: 43860000--43861128 Score: 1741
Period size: 580 Copynumber: 1.9 Consensus size: 580
43859990 ATCCATCATC
* * * *
43860000 TTAATCTGTTCCACTACAACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAATT
1 TTAATCTGCTCCACTACAACTTCAGGGAGATAGGATCAGTAACTTCAATCTGCTCCACTGCAACT
* **
43860065 TCAGGGAGATAAAACTTGTATCTTCAACTTGCCCCACTGCAACTTCATGGG-GATAAGGTTTGCT
66 TCAGGGAGATAAAACTTGTAACTTCAACTTGCCCCACTGCAACTTCA-GGGAGATAAGACTTG-T
* * * **
43860129 AT-TTCAACCTGCTCTACTGTAACTTTAGAGAGATAAAGTTTGATATGATCTGTTCTACTGCAAC
129 ATCTTCAACCTGCCCTACTGCAACTTCAGAGAGATAAAGTTTGATATGATCTACTCTACTGCAAC
43860193 TTCAGAGAGACGAGATCTGTTATGGTAGATTTAATCTATTCCACTACAACTTCAGGGAAATACGA
194 TTCAGAGAGACGAGATCTGTTATGGTAGATTTAATCTATTCCACTACAACTTCAGGGAAATACGA
* *
43860258 TTTGCTATCTTTAATTTGCTCCACTGCAACTTCAAGGAGATAGGATCCATCATGTTAATTCGCTC
259 TTTGCTATCTTTAATCTGCTCCACTGCAAATTCAAGGAGATAGGATCCATCATGTTAATTCGCTC
*
43860323 CACTGCAACTTCAAGGATGTAAGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAG-GAAAAT
324 CACTGCAACTTCAAGGAGGTAAGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGAG-AAAT
*
43860387 AAGACTTGTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATTTCAACCTG
388 AAGACTTGTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATATCAACCTG
* *
43860452 CTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGACCTGCTCTACTGCAACTTCAGAGAGACG
453 CTCTACTGCAACTTCAGAGAGATAAAGTTTGATATGACATGCTCTACTGCAACTTCAGAGAGACG
43860517 AGATCTGTTATGGTAGATTTAATCTGTTCCACTGCAACTTCAGGAAAATACGATTTGCTATCT
518 AGATCTGTTATGGTAGATTTAATCTGTTCCACTGCAACTTCAGGAAAATACGATTTGCTATCT
* * * *
43860580 TTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATCCA-TCATTTTAAT-TCGCTCCACTGCAA
1 TTAATCTGCTCCACTACAACTTCAGGGAGATAGGAT-CAGTAACTTCAATCT-GCTCCACTGCAA
* ** * *
43860643 CTTCAGGGAGGTAGGA-TTAGTAACTTCAA-TATGCTCCACTGCAACTTTAGGGAGATAAGACTT
64 CTTCAGGGAGATAAAACTT-GTAACTTCAACT-TGCCCCACTGCAACTTCAGGGAGATAAGACTT
* *
43860706 GTGTCTTCAACTTGCCCTACTGCAACTTCAGAGAGATAAAGTTTGATATGATCTACTCTACTGCA
127 GTATCTTCAACCTGCCCTACTGCAACTTCAGAGAGATAAAGTTTGATATGATCTACTCTACTGCA
* *
43860771 ACTTCAGAGAGACGAGATCTGTTATGGTAGATTTAATCTATTCCACTGCAACTTTAGGGAAATAC
192 ACTTCAGAGAGACGAGATCTGTTATGGTAGATTTAATCTATTCCACTACAACTTCAGGGAAATAC
* * * *
43860836 GATTTGCTATCTTTAATCTGCTCCATTGCAAATTCAGGGAGATAGGATCCATCATTTTAATTTGC
257 GATTTGCTATCTTTAATCTGCTCCACTGCAAATTCAAGGAGATAGGATCCATCATGTTAATTCGC
* * *
43860901 TCCACTGCAACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGAGAGA
322 TCCACTGCAACTTCAAGGAGGTAAGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGAGAAA
* * * * *
43860966 TAAGACTTGTATCTTCAACTTGCGCCACTGTAACTTCATGGGTATAAGGTTTTCTATATCAACTT
387 TAAGACTTGTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATATCAACCT
*
43861031 GCTCTACTGCAACTTCAGAGAGATAAAGTTTGATATGATATGCTCTACTGCAACTTCAGAGAGAC
452 GCTCTACTGCAACTTCAGAGAGATAAAGTTTGATATGACATGCTCTACTGCAACTTCAGAGAGAC
*
43861096 GAGATTTGTTATGGTAGATTTAATCTGTTCCAC
517 GAGATCTGTTATGGTAGATTTAATCTGTTCCAC
43861129 CTATAATAGC
Statistics
Matches: 497, Mismatches: 45, Indels: 14
0.89 0.08 0.03
Matches are distributed among these distances:
579 9 0.02
580 486 0.98
581 2 0.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (580 bp):
TTAATCTGCTCCACTACAACTTCAGGGAGATAGGATCAGTAACTTCAATCTGCTCCACTGCAACT
TCAGGGAGATAAAACTTGTAACTTCAACTTGCCCCACTGCAACTTCAGGGAGATAAGACTTGTAT
CTTCAACCTGCCCTACTGCAACTTCAGAGAGATAAAGTTTGATATGATCTACTCTACTGCAACTT
CAGAGAGACGAGATCTGTTATGGTAGATTTAATCTATTCCACTACAACTTCAGGGAAATACGATT
TGCTATCTTTAATCTGCTCCACTGCAAATTCAAGGAGATAGGATCCATCATGTTAATTCGCTCCA
CTGCAACTTCAAGGAGGTAAGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGAGAAATAAG
ACTTGTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATATCAACCTGCTC
TACTGCAACTTCAGAGAGATAAAGTTTGATATGACATGCTCTACTGCAACTTCAGAGAGACGAGA
TCTGTTATGGTAGATTTAATCTGTTCCACTGCAACTTCAGGAAAATACGATTTGCTATCT
Found at i:43860949 original size:624 final size:620
Alignment explanation
Indices: 43859198--43861003 Score: 2373
Period size: 624 Copynumber: 2.9 Consensus size: 620
43859188 AGATTGGCTT
* * * * * *
43859198 AACCTTCTCCACTGAAACTTCAGGGAGATAAGGTTTGATATGATCTACTCTACTGCAACTTCAG-
1 AACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
* * *
43859262 GAAGATGAGATCTGTTATGATAGATTTAATCTATTCTACTGCAAGTTCAGGGAAATACGATTTGC
66 G-AGATGAGATCTGTTATGGTAGATTTAATCTGTTCTACTGCAACTTCAGGGAAATACGATTTGC
* *
43859327 TATCTTTAATCTGTTCCACT-ATAACTTCAAGGAGATAGGATCCATCATCTTAATCTGTTCCACT
130 TATCTTTAATCTGCTCCACTGA-AACTTCAGGGAGATAGGATCCATCATCTTAATCTGTTCCACT
* * * *
43859391 GCAATTTCAGGCAGGTAGGATTAATAACTTCAATATGCTCCACTGCAATTTCAGGGGGATAAGAC
194 GCAACTTCAGGGAGGTAGGATTAGTAACTTCAATATGCTCCACTGCAATTTCAGGGAGATAAGAC
*
43859456 TTGTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTTCTATTTCAACCTGCTCTA
259 TTGTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGG-TTT-GATTTCAACCTGCTCTA
* *
43859521 CTGCAACTTCAAAGAGATAAAGTTTGATATGA-TATGC--TCTACTGCAACTTCAGAGAGACGAG
322 CTGCAACTTCAGAGAGAGAAAGTTTG-TA-GATTAT-CTTTCTACTGCAACTTCAGAGAGAC-AG
*
43859583 ATCTGTTATGGTAGATTTAATCTGTTCTACTGCAACTTCAGGGAAATACGATTTGCTATCTTTAA
383 ATCTGTTATGGTAGATTTAATCTGTTCCACTGCAACTTCAGGGAAATACGATTTGCTATCTTTAA
* * *** * * *
43859648 TCTGCTCCACTGCAACTTCAGGGAGATAGGATCCATCATCTTAATCCATTCCACTACAACTTTAG
448 TTTGCTCCACTGCAACTTCAGGGAGATAGGATCCAT-AACTTAATCTGCTCCACTGCAACTTCAA
* * * *
43859713 GGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATAAGACTTGTATCTTC
512 GGAGGTAAGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGGAAAATAAGACTTGTATCTTC
*
43859778 AACTTGCCCCACTGCAACTTCATATGGATAAGGTTTGCTATTTC
577 AACTTGCCCCACTGCAACTTCATAGGGATAAGGTTTGCTATTTC
43859822 AACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
1 AACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
*
43859887 GAGATGAGATCTGTTATGGTAGATTTACTCTGTTCTACTGCAACTTCAGGGAAATACGATTTGCT
66 GAGATGAGATCTGTTATGGTAGATTTAATCTGTTCTACTGCAACTTCAGGGAAATACGATTTGCT
* * *
43859952 ATCTTTAATCTGCTCCACTGAAACTTTAGGGAGATATGATCCATCATCTTAATCTGTTCCACTAC
131 ATCTTTAATCTGCTCCACTGAAACTTCAGGGAGATAGGATCCATCATCTTAATCTGTTCCACTGC
* *
43860017 AACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATAAAACTT
196 AACTTCAGGGAGGTAGGATTAGTAACTTCAATATGCTCCACTGCAATTTCAGGGAGATAAGACTT
43860082 GTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATTTCAACCTGCTCTACT
261 GTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTG--ATTTCAACCTGCTCTACT
* * * * *
43860147 GTAACTTTAGAGAGATAAAGTTTG-ATATGATCTGTTCTACTGCAACTTCAGAGAGACGAGATCT
324 GCAACTTCAGAGAGAGAAAGTTTGTAGATTATCT-TTCTACTGCAACTTCAGAGAGAC-AGATCT
* *
43860211 GTTATGGTAGATTTAATCTATTCCACTACAACTTCAGGGAAATACGATTTGCTATCTTTAATTTG
387 GTTATGGTAGATTTAATCTGTTCCACTGCAACTTCAGGGAAATACGATTTGCTATCTTTAATTTG
* **
43860276 CTCCACTGCAACTTCAAGGAGATAGGATCCATCATGTTAAT-TCGCTCCACTGCAACTTCAAGGA
452 CTCCACTGCAACTTCAGGGAGATAGGATCCAT-AACTTAATCT-GCTCCACTGCAACTTCAAGGA
*
43860340 TGTAAGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGGAAAATAAGACTTGTATCTTCAAC
515 GGTAAGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGGAAAATAAGACTTGTATCTTCAAC
*
43860405 TTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATTTC
580 TTGCCCCACTGCAACTTCATAGGGATAAGGTTTGCTATTTC
*
43860446 AACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGACCTGCTCTACTGCAACTTCAGA
1 AACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
* * *
43860511 GAGACGAGATCTGTTATGGTAGATTTAATCTGTTCCACTGCAACTTCAGGAAAATACGATTTGCT
66 GAGATGAGATCTGTTATGGTAGATTTAATCTGTTCTACTGCAACTTCAGGGAAATACGATTTGCT
* * *
43860576 ATCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATCCATCATTTTAAT-TCGCTCCACTG
131 ATCTTTAATCTGCTCCACTGAAACTTCAGGGAGATAGGATCCATCATCTTAATCT-GTTCCACTG
43860640 CAACTTCAGGGAGGTAGGATTAGTAACTTCAATATGCTCCACTGCAACTTT-AGGGAGATAAGAC
195 CAACTTCAGGGAGGTAGGATTAGTAACTTCAATATGCTCCACTGCAA-TTTCAGGGAGATAAGAC
* * * * * * * *
43860704 TTGTGTCTTCAACTTGCCCTACTGCAACTTCA-GAGAGATAAAGTTTGATAT-GATCTACTCTAC
259 TTGTATCTTCAACTTGCCCCACTGCAACTTCATG-GGGATAAGGTTTGATTTCAACCTGCTCTAC
* * *
43860767 TGCAACTTCAGAGAGACGAGATCTGTTATGGTAGATTTAATCTATTCCACTGCAACTTTAG-G-G
323 TGCAACTTCAGAGAGA-GA-A--AGTT-T-GTAGA-TT-ATCT-TTCTACTGCAACTTCAGAGAG
* ** * * * * * *
43860830 A-A-ATAC-GATT-TGCTATCTTTAATCTGCTCCATTGCAAATTCAGGGAGATAGGA--T-CCAT
379 ACAGAT-CTG-TTATGGTAGATTTAATCTGTTCCACTGCAACTTCAGGGAAATACGATTTGCTAT
* *
43860888 CATTTTAATTTGCTCCACTGCAACTTCAGGGAGGTAGGAT-TAGTAACTTCAATCTGCTCCACTG
442 C--TTTAATTTGCTCCACTGCAACTTCAGGGAGATAGGATCCA-TAACTT-AATCTGCTCCACTG
* * * *
43860952 CAACTTC-AGAGAGATAAGACTT-GTATCTTCAA-CTTGCGCCACTGTAACTTCA
503 CAACTTCAAG-GAGGTAAGA-TTAGTAACTTCAATC-TGCTCCACTGCAACTTCA
43861004 TGGGTATAAG
Statistics
Matches: 1054, Mismatches: 97, Indels: 62
0.87 0.08 0.05
Matches are distributed among these distances:
621 25 0.02
622 11 0.01
623 14 0.01
624 926 0.88
625 47 0.04
626 5 0.00
627 1 0.00
628 4 0.00
629 2 0.00
630 19 0.02
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (620 bp):
AACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
GAGATGAGATCTGTTATGGTAGATTTAATCTGTTCTACTGCAACTTCAGGGAAATACGATTTGCT
ATCTTTAATCTGCTCCACTGAAACTTCAGGGAGATAGGATCCATCATCTTAATCTGTTCCACTGC
AACTTCAGGGAGGTAGGATTAGTAACTTCAATATGCTCCACTGCAATTTCAGGGAGATAAGACTT
GTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGATTTCAACCTGCTCTACTGC
AACTTCAGAGAGAGAAAGTTTGTAGATTATCTTTCTACTGCAACTTCAGAGAGACAGATCTGTTA
TGGTAGATTTAATCTGTTCCACTGCAACTTCAGGGAAATACGATTTGCTATCTTTAATTTGCTCC
ACTGCAACTTCAGGGAGATAGGATCCATAACTTAATCTGCTCCACTGCAACTTCAAGGAGGTAAG
ATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGGAAAATAAGACTTGTATCTTCAACTTGCCC
CACTGCAACTTCATAGGGATAAGGTTTGCTATTTC
Found at i:43860994 original size:44 final size:43
Alignment explanation
Indices: 43859418--43861056 Score: 345
Period size: 44 Copynumber: 36.8 Consensus size: 43
43859408 GGATTAATAA
* * *
43859418 CTTCAA-TATGCTCCACTGCAATTTCAGGGGGATAAGACTTGTAT
1 CTTCAACT-TGCTCCACTGCAACTTCAGAGAGATAAGA-TTGTAT
* * * *
43859462 CTTCAACTTGCCCCACTGCAACTTCATG-GGGATAAGGTTTTCTAT
1 CTTCAACTTGCTCCACTGCAACTTCA-GAGAGATAA-G-ATTGTAT
* * * *
43859507 -TTCAACCTGCTCTACTGCAACTTCAAAGAGATAAAGTTTG-AT
1 CTTCAACTTGCTCCACTGCAACTTCAGAGAGAT-AAGATTGTAT
* * * **
43859549 -AT-GA-TATGCTCTACTGCAACTTCAGAGAGACGAGATCTGTTATGGT
1 CTTCAACT-TGCTCCACTGCAACTTCAGAGAGATAAGAT-TG-TA---T
* * * * * * *
43859595 AGATTTAA-TCTGTTCTACTGCAACTTCAGGGAAATACGATTTGCTAT
1 --CTTCAACT-TGCTCCACTGCAACTTCAGAGAGATAAGA-TTG-TAT
* * * **
43859642 CTTTAA-TCTGCTCCACTGCAACTTCAGGGAGATAGGATCCATCAT
1 CTTCAACT-TGCTCCACTGCAACTTCAGAGAGATAAGAT-TGT-AT
* * * * * * *
43859687 CTT-AA--TCCATTCCACTACAACTTTAGGGAGGTAGGATTAGTAA
1 CTTCAACTTGC--TCCACTGCAACTTCAGAGAGATAAGATT-GTAT
* *
43859730 CTTCAA-TCTGCTCCACTGCAATTTCAGGGAGATAAGACTTGTAT
1 CTTCAACT-TGCTCCACTGCAACTTCAGAGAGATAAGA-TTGTAT
* * *
43859774 CTTCAACTTGCCCCACTGCAACTTCATATG-GATAAGGTTTGCTAT
1 CTTCAACTTGCTCCACTGCAACTTCAGA-GAGATAA-GATTG-TAT
* * * *
43859819 -TTCAACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTG-AT
1 CTTCAACTTGCTCCACTGCAACTTCAGAGAGAT-AAGATTGTAT
* * * * *
43859861 -ATGATC-TGCTCTACTGCAACTTCAGAGAGATGAGATCTGTTAT
1 CTTCAACTTGCTCCACTGCAACTTCAGAGAGATAAGAT-TG-TAT
* ** * * * * *
43859904 GGTAGATTTACTCTGTTCTACTGCAACTTCAGGGAAATACGATTTGCTAT
1 -CT---TCAACT-TGCTCCACTGCAACTTCAGAGAGATAAGA-TTG-TAT
* * * * * **
43859954 CTTTAA-TCTGCTCCACTGAAACTTTAGGGAGATATGATCCATCAT
1 CTTCAACT-TGCTCCACTGCAACTTCAGAGAGATAAGAT-TGT-AT
* * * * * *
43859999 CTT-AA-TCTGTTCCACTACAACTTCAGGGAGGTAGGATTAGTAA
1 CTTCAACT-TGCTCCACTGCAACTTCAGAGAGATAAGATT-GTAT
* * *
43860042 CTTCAA-TCTGCTCCACTGCAATTTCAGGGAGATAAAACTTGTAT
1 CTTCAACT-TGCTCCACTGCAACTTCAGAGAGATAAGA-TTGTAT
* * *
43860086 CTTCAACTTGCCCCACTGCAACTTCATG-GGGATAAGGTTTGCTAT
1 CTTCAACTTGCTCCACTGCAACTTCA-GAGAGATAA-GATTG-TAT
* * * * *
43860131 -TTCAACCTGCTCTACTGTAACTTTAGAGAGATAAAGTTTG-AT
1 CTTCAACTTGCTCCACTGCAACTTCAGAGAGAT-AAGATTGTAT
* * * * * **
43860173 -ATGATC-TGTTCTACTGCAACTTCAGAGAGACGAGATCTGTTATGGT
1 CTTCAACTTGCTCCACTGCAACTTCAGAGAGATAAGAT-TG-TA---T
* * * * * *
43860219 AGATTTAATCTAT--TCCACTACAACTTCAGGGAAATACGATTTGCTAT
1 --CTTCAA-CT-TGCTCCACTGCAACTTCAGAGAGATAAGA-TTG-TAT
* * * **
43860266 CTTTAATTTGCTCCACTGCAACTTCA-AGGAGATAGGA-TCCAT
1 CTTCAACTTGCTCCACTGCAACTTCAGA-GAGATAAGATTGTAT
* *
43860308 CATGTTAA-TTCGCTCCACTGCAACTTCA-AG-GATGTAAGATTAGTAA
1 C-T-TCAACTT-GCTCCACTGCAACTTCAGAGAGA--TAAGATT-GTAT
*
43860354 CTTCAA-TCTGCTCCACTGCAACTTCAG-GAAAATAAGACTTGTAT
1 CTTCAACT-TGCTCCACTGCAACTTCAGAG-AGATAAGA-TTGTAT
* * *
43860398 CTTCAACTTGCCCCACTGCAACTTCATG-GGGATAAGGTTTGCTAT
1 CTTCAACTTGCTCCACTGCAACTTCA-GAGAGATAA-GATTG-TAT
* * * *
43860443 -TTCAACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTG-AT
1 CTTCAACTTGCTCCACTGCAACTTCAGAGAGAT-AAGATTGTAT
* * * * **
43860485 -AT-GACCTGCTCTACTGCAACTTCAGAGAGACGAGATCTGTTATGGT
1 CTTCAACTTGCTCCACTGCAACTTCAGAGAGATAAGAT-TG-TA---T
* * * * *
43860531 AGATTTAA-TCTGTTCCACTGCAACTTCAG-GAAAATACGATTTGCTAT
1 --CTTCAACT-TGCTCCACTGCAACTTCAGAG-AGATAAGA-TTG-TAT
* * * **
43860578 CTTTAA-TCTGCTCCACTGCAACTTCAGGGAGATAGGA-TCCAT
1 CTTCAACT-TGCTCCACTGCAACTTCAGAGAGATAAGATTGTAT
* * * * *
43860620 CATTTTAA-TTCGCTCCACTGCAACTTCAGGGAGGTAGGATTAGTAA
1 C--TTCAACTT-GCTCCACTGCAACTTCAGAGAGATAAGATT-GTAT
* * *
43860666 CTTCAA-TATGCTCCACTGCAACTTTAGGGAGATAAGACTTGTGT
1 CTTCAACT-TGCTCCACTGCAACTTCAGAGAGATAAGA-TTGTAT
*
43860710 CTTCAACTTGC-CCTACTGCAACTTCAGAGAGATAAAGTTTGATAT
1 CTTCAACTTGCTCC-ACTGCAACTTCAGAGAGAT-AAGATTG-TAT
** * **
43860755 GATCTAC-T-CT--ACTGCAACTTCAGAGAGACGAGATCTGTTATGGT
1 CTTCAACTTGCTCCACTGCAACTTCAGAGAGATAAGAT-TG-TA---T
* * * * * *
43860799 AGATTTAATCTAT--TCCACTGCAACTTTAGGGAAATACGATTTGCTAT
1 --CTTCAA-CT-TGCTCCACTGCAACTTCAGAGAGATAAGA-TTG-TAT
* * * * * **
43860846 CTTTAA-TCTGCTCCATTGCAAATTCAGGGAGATAGGA-TCCAT
1 CTTCAACT-TGCTCCACTGCAACTTCAGAGAGATAAGATTGTAT
* * * * * *
43860888 CATTTTAATTTGCTCCACTGCAACTTCAGGGAGGTAGGATTAGTAA
1 C--TTCAACTTGCTCCACTGCAACTTCAGAGAGATAAGATT-GTAT
43860934 CTTCAA-TCTGCTCCACTGCAACTTCAGAGAGATAAGACTTGTAT
1 CTTCAACT-TGCTCCACTGCAACTTCAGAGAGATAAGA-TTGTAT
* * * * *
43860978 CTTCAACTTGCGCCACTGTAACTTCATG-G-GTATAAGGTTTTCT
1 CTTCAACTTGCTCCACTGCAACTTCA-GAGAG-ATAAGATTGTAT
* *
43861021 ATATCAACTTGCTCTACTGCAACTTCAGAGAGATAA
1 CT-TCAACTTGCTCCACTGCAACTTCAGAGAGATAA
43861057 AGTTTGATAT
Statistics
Matches: 1215, Mismatches: 238, Indels: 284
0.70 0.14 0.16
Matches are distributed among these distances:
40 15 0.01
41 125 0.10
42 29 0.02
43 41 0.03
44 623 0.51
45 214 0.18
46 18 0.01
47 5 0.00
48 3 0.00
49 7 0.01
50 129 0.11
51 5 0.00
52 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (43 bp):
CTTCAACTTGCTCCACTGCAACTTCAGAGAGATAAGATTGTAT
Found at i:43861001 original size:88 final size:88
Alignment explanation
Indices: 43858939--43861003 Score: 449
Period size: 88 Copynumber: 23.2 Consensus size: 88
43858929 CTTGGATATA
* * * ** **
43858939 CTCCACTGC-ACTTCAGAGAGATACGGCTT-GTAGCTTCAATCCACTCTGCTGCAACTTCAAGGG
1 CTCCACTGCAACTTCAGGGAGATA-GGATTAGTAACTTCAATCTGCTCCACTGCAACTTC-AGGG
* *
43859002 A-ACAAGA-TTGGTATCTTTAACCTG
64 AGATAAGACTT-GTATCTTTAACTTG
* * * * *
43859026 CTCCACTACAACTTCAGGGAGATAAGACTCGTTATGGTAGA-TTTAATCCGAC-CTACTGCAACT
1 CTCCACTGCAACTTCAGGGAGATAGGA----TTA--GTA-ACTTCAATCTG-CTCCACTGCAACT
* * *
43859089 TCATGGG-TATAGGA-TT-CATCGTTTTAA-TTCG
58 TCA-GGGAGATAAGACTTGTATC--TTTAACTT-G
* * * * * * *
43859120 CTTCACTACAACTTCAAGGAGATAGGATTAATAGCTTCAATCTGCTCCACTGTAACTTCAAGGAG
1 CTCCACTGCAACTTCAGGGAGATAGGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAG
*
43859185 ATAAGA-TTG--GC-TTAACCTT-
66 ATAAGACTTGTATCTTTAA-CTTG
* * * * * *
43859204 CTCCACTGAAACTTCAGGGAGATAAGG-TT--TGA-TAT-GATCTACTCTACTGCAACTTCAGGA
1 CTCCACTGCAACTTCAGGGAGAT-AGGATTAGTAACT-TCAATCTGCTCCACTGCAACTTCAGGG
* **
43859264 AGATGAGATCTGTTATGATAGATTTAATCTAT-
64 AGATAAGA-C---T-TG-TATCTTTAA-CT-TG
* * * * * * * * ** *
43859296 -TCTACTGCAAGTTCAGGGAAATACGATTTGCTATCTTTAATCTGTTCCACTATAACTTCAAGGA
1 CTCCACTGCAACTTCAGGGAGATAGGATTAG-TAACTTCAATCTGCTCCACTGCAACTTCAGGGA
* **
43859360 GATAGGA--TCCATCATCTTAA-TCTG
65 GATAAGACTTGTATC-T-TTAACT-TG
* * * * * * * *
43859384 TTCCACTGCAATTTCAGGCAGGTAGGATTAATAACTTCAATATGCTCCACTGCAATTTCAGGGGG
1 CTCCACTGCAACTTCAGGGAGATAGGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAG
*
43859449 ATAAGACTTGTATCTTCAACTTG
66 ATAAGACTTGTATCTTTAACTTG
* * ** * * * **
43859472 CCCCACTGCAACTTCATGGG-GATAAGGTTTTCT-ATTTCAACCTGCTCTACTGCAACTTCAAAG
1 CTCCACTGCAACTTCA-GGGAGAT-AGGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGGG
* * *
43859535 AGATAA-AGTT-TGA--TATGA-TATG
64 AGATAAGACTTGT-ATCTTTAACT-TG
* * * * * *
43859557 CTCTACTGCAACTTCAGAGAGA-CGAGATCTGTTATGGTAGA-TTTAATCTGTTCTACTGCAACT
1 CTCCACTGCAACTTCAGGGAGATAG-GA----TTA--GTA-ACTTCAATCTGCTCCACTGCAACT
* * *
43859620 TCAGGGAAATACGATTTGCTATCTTTAA-TCTG
58 TCAGGGAGATAAGACTTG-TATCTTTAACT-TG
* * *** * *
43859652 CTCCACTGCAACTTCAGGGAGATAGGATCCA-TCATCTT-AATCCATTCCACTACAACTTTAGGG
1 CTCCACTGCAACTTCAGGGAGATAGGAT-TAGT-AACTTCAATCTGCTCCACTGCAACTTCAGGG
* * * *
43859715 AGGTAGGA-TTAGTAACTTCAA-TCTG
64 AGATAAGACTT-GTATCTTTAACT-TG
* * * * **
43859740 CTCCACTGCAATTTCAGGGAGATAAGACTT-GTATCTTCAA-CTTGCCCCACTGCAACTTCATAT
1 CTCCACTGCAACTTCAGGGAGATAGGA-TTAGTAACTTCAATC-TGCTCCACTGCAACTTCA-GG
** * *
43859803 G-GATAAGGTTTGCTAT-TTCAACCTG
63 GAGATAAGACTTG-TATCTTTAACTTG
* * * * * * * *
43859828 CTCTACTGTAACTTCAGAGAGATA-AAGTT--TGA-TAT-GATCTGCTCTACTGCAACTTCAGAG
1 CTCCACTGCAACTTCAGGGAGATAGGA-TTAGTAACT-TCAATCTGCTCCACTGCAACTTCAGGG
* * *
43859888 AGATGAGA-TCTGTTATGGTAGATTTACTCTG
64 AGATAAGACT-TG-TAT-CT---TTAACT-TG
* * * * * * * * *
43859919 TTCTACTGCAACTTCAGGGAAATACGATTTGCTATCTTTAATCTGCTCCACTGAAACTTTAGGGA
1 CTCCACTGCAACTTCAGGGAGATAGGATTAG-TAACTTCAATCTGCTCCACTGCAACTTCAGGGA
* **
43859984 GATATGA--TCCATCATCTTAA-TCTG
65 GATAAGACTTGTATC-T-TTAACT-TG
* * * *
43860008 TTCCACTACAACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAG
1 CTCCACTGCAACTTCAGGGAGATAGGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAG
* *
43860073 ATAAAACTTGTATCTTCAACTTG
66 ATAAGACTTGTATCTTTAACTTG
* * * * * * * *
43860096 CCCCACTGCAACTTCATGGG-GATAAGG-TTTGCT-ATTTCAACCTGCTCTACTGTAACTTTAGA
1 CTCCACTGCAACTTCA-GGGAGAT-AGGATTAG-TAACTTCAATCTGCTCCACTGCAACTTCAGG
* * * *
43860158 GAGATAA-AGTT-TGAT-ATGATC-TG
63 GAGATAAGACTTGT-ATCTTTAACTTG
* * * * * ** *
43860181 TTCTACTGCAACTTCAGAGAGA-CGAGATCTGTTATGGTAGA-TTTAATCTATTCCACTACAACT
1 CTCCACTGCAACTTCAGGGAGATAG-GA----TTA--GTA-ACTTCAATCTGCTCCACTGCAACT
* * * *
43860244 TCAGGGAAATACGATTTGCTATCTTTAATTTG
58 TCAGGGAGATAAGACTTG-TATCTTTAACTTG
* * * * *
43860276 CTCCACTGCAACTTCAAGGAGATAGGATCCA-TCA-TGTTAAT-TCGCTCCACTGCAACTTCAAG
1 CTCCACTGCAACTTCAGGGAGATAGGAT-TAGTAACT-TCAATCT-GCTCCACTGCAACTTCAGG
* *
43860338 GATG-TAAGA-TTAGTAACTTCAA-TCTG
63 GA-GATAAGACTT-GTATCTTTAACT-TG
* * * * *
43860364 CTCCACTGCAACTTCAGGAAAATAAGACTT-GTATCTTCAA-CTTGCCCCACTGCAACTTCATGG
1 CTCCACTGCAACTTCAGGGAGATAGGA-TTAGTAACTTCAATC-TGCTCCACTGCAACTTCA-GG
** * *
43860427 G-GATAAGGTTTGCTAT-TTCAACCTG
63 GAGATAAGACTTG-TATCTTTAACTTG
* * * * * * * * *
43860452 CTCTACTGTAACTTCAGAGAGATA-AAGTT--TGA-TAT-GACCTGCTCTACTGCAACTTCAGAG
1 CTCCACTGCAACTTCAGGGAGATAGGA-TTAGTAACT-TCAATCTGCTCCACTGCAACTTCAGGG
** **
43860512 AGACGAGATCTGTTATGGTAGATTTAA-TCTG
64 AGATAAGA-C---T-T-GTATCTTTAACT-TG
* * * * * * *
43860543 TTCCACTGCAACTTCAGGAAAATACGATTTGCTATCTTTAATCTGCTCCACTGCAACTTCAGGGA
1 CTCCACTGCAACTTCAGGGAGATAGGATTAG-TAACTTCAATCTGCTCCACTGCAACTTCAGGGA
* **
43860608 GATAGGA--TCCATCATTTTAA-TTCG
65 GATAAGACTTGTATC--TTTAACTT-G
* * *
43860632 CTCCACTGCAACTTCAGGGAGGTAGGATTAGTAACTTCAATATGCTCCACTGCAACTTTAGGGAG
1 CTCCACTGCAACTTCAGGGAGATAGGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAG
* *
43860697 ATAAGACTTGTGTCTTCAACTTG
66 ATAAGACTTGTATCTTTAACTTG
* * * * * * *
43860720 C-CCTACTGCAACTTCAGAGAGATA-AAGTT--TGA-TAT-GATCTACTCTACTGCAACTTCAGA
1 CTCC-ACTGCAACTTCAGGGAGATAGGA-TTAGTAACT-TCAATCTGCTCCACTGCAACTTCAGG
** **
43860779 GAGACGAGATCTGTTATGGTAGATTTAATCTAT-
63 GAGATAAGA-C---T-T-GTATCTTTAA-CT-TG
* * * * * * * *
43860812 -TCCACTGCAACTTTAGGGAAATACGATTTGCTATCTTTAATCTGCTCCATTGCAAATTCAGGGA
1 CTCCACTGCAACTTCAGGGAGATAGGATTAG-TAACTTCAATCTGCTCCACTGCAACTTCAGGGA
* ** *
43860876 GATAGGA--TCCATCATTTTAATTTG
65 GATAAGACTTGTATC--TTTAACTTG
* *
43860900 CTCCACTGCAACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGAGAG
1 CTCCACTGCAACTTCAGGGAGATAGGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAG
*
43860965 ATAAGACTTGTATCTTCAACTTG
66 ATAAGACTTGTATCTTTAACTTG
* *
43860988 CGCCACTGTAACTTCA
1 CTCCACTGCAACTTCA
43861004 TGGGTATAAG
Statistics
Matches: 1415, Mismatches: 380, Indels: 365
0.66 0.18 0.17
Matches are distributed among these distances:
81 27 0.02
82 2 0.00
83 2 0.00
84 36 0.03
85 116 0.08
86 18 0.01
87 48 0.03
88 501 0.35
89 212 0.15
90 36 0.03
91 157 0.11
92 24 0.02
93 7 0.00
94 73 0.05
95 154 0.11
96 2 0.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (88 bp):
CTCCACTGCAACTTCAGGGAGATAGGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAG
ATAAGACTTGTATCTTTAACTTG
Found at i:43866769 original size:30 final size:30
Alignment explanation
Indices: 43866733--43866795 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
43866723 ACTTAATAAG
43866733 CAAATGCCTCTAAAATAATAACAAAATCAA
1 CAAATGCCTCTAAAATAATAACAAAATCAA
* *
43866763 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATCAA
43866793 CAA
1 CAA
43866796 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.57, C:0.17, G:0.03, T:0.22
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATCAA
Found at i:43867441 original size:2 final size:2
Alignment explanation
Indices: 43867436--43867464 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
43867426 TATATATATA
43867436 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
43867465 AAAGGATGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:43870516 original size:29 final size:29
Alignment explanation
Indices: 43870484--43870563 Score: 77
Period size: 29 Copynumber: 3.0 Consensus size: 29
43870474 CTCAATTTGC
43870484 TCTCAAATTTCTCTCAAATCCCTATTTAA
1 TCTCAAATTTCTCTCAAATCCCTATTTAA
* *
43870513 TCTC-AATTTGCTCTCAATTTCC----T--
1 TCTCAAATTT-CTCTCAAATCCCTATTTAA
43870536 T-TCAAATTTCTCTCAAATCCCTATTTAA
1 TCTCAAATTTCTCTCAAATCCCTATTTAA
43870564 AAGAGCTTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 17
0.65 0.07 0.28
Matches are distributed among these distances:
22 12 0.31
23 6 0.15
25 1 0.03
26 1 0.03
28 5 0.13
29 14 0.36
ACGTcount: A:0.28, C:0.28, G:0.01, T:0.44
Consensus pattern (29 bp):
TCTCAAATTTCTCTCAAATCCCTATTTAA
Found at i:43870527 original size:51 final size:52
Alignment explanation
Indices: 43870461--43870563 Score: 172
Period size: 51 Copynumber: 2.0 Consensus size: 52
43870451 ATAAATCCTT
*
43870461 TCTCTAATTTCCTCTCAATTTGCTCTCAAATTTCTCTCAAATCCCTATTTAA
1 TCTCTAATTTCCTCTCAATTTCCTCTCAAATTTCTCTCAAATCCCTATTTAA
* *
43870513 TCTC-AATTTGCTCTCAATTTCCTTTCAAATTTCTCTCAAATCCCTATTTAA
1 TCTCTAATTTCCTCTCAATTTCCTCTCAAATTTCTCTCAAATCCCTATTTAA
43870564 AAGAGCTTTA
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
51 44 0.92
52 4 0.08
ACGTcount: A:0.25, C:0.28, G:0.02, T:0.45
Consensus pattern (52 bp):
TCTCTAATTTCCTCTCAATTTCCTCTCAAATTTCTCTCAAATCCCTATTTAA
Done.