Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53248092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1300000 characters in sequence are not A, C, G, or T
File 148 of 175
Found at i:45068708 original size:21 final size:21
Alignment explanation
Indices: 45068684--45068739 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
45068674 ATAACTTTTA
*
45068684 AATAATATATAAT-TAATATGT
1 AATAATAAATAATATAA-ATGT
*
45068705 AATAAAAAATAATATAAATGT
1 AATAATAAATAATATAAATGT
*
45068726 AAAAATAAA-AATAT
1 AATAATAAATAATAT
45068740 TTGTTTCAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
20 5 0.17
21 22 0.73
22 3 0.10
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (21 bp):
AATAATAAATAATATAAATGT
Found at i:45072003 original size:42 final size:42
Alignment explanation
Indices: 45071952--45072324 Score: 448
Period size: 42 Copynumber: 8.9 Consensus size: 42
45071942 GTTTACAAAC
* *
45071952 AAAAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
*
45071994 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
*
45072036 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTGTAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAG-AA
* * *
45072078 AAAAATGCCACTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
*
45072120 AAAAACGCCGCGAAAGAACATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
*
45072162 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTA-AGG
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGA-A
* * * ****
45072204 GAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTTTT
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-CTTAGAA
** * * * ***
45072247 CTAATCGCCGCTAAAGAACATGTTCTTTAGTGGC-ATT-TTT
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
* * *
45072287 ACAAACGCCGCAAAAGAACATGTTCTTTAGTGGCGCTT
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTT
45072325 TTATACAAAA
Statistics
Matches: 294, Mismatches: 31, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
40 33 0.11
41 8 0.03
42 219 0.74
43 34 0.12
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
Found at i:45072415 original size:14 final size:14
Alignment explanation
Indices: 45072392--45072425 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
45072382 GCCCTCCTGT
*
45072392 AGCAAAATTTCAAA
1 AGCAACATTTCAAA
45072406 AGCAACATTTCAAA
1 AGCAACATTTCAAA
45072420 AGCAAC
1 AGCAAC
45072426 CAATAGCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.53, C:0.21, G:0.09, T:0.18
Consensus pattern (14 bp):
AGCAACATTTCAAA
Found at i:45072717 original size:21 final size:21
Alignment explanation
Indices: 45072649--45072719 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
45072639 TTTTGCTCTG
* *
45072649 CTCTGCTTCTCTTGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* *
45072670 CTCCGCTTCCCTCGCTGCAGT
1 CTCTGCTTCCCTCGCTGCAGC
* * *
45072691 CGCTGCTTCCCTCGCTTCCGC
1 CTCTGCTTCCCTCGCTGCAGC
45072712 CTCTGCTT
1 CTCTGCTT
45072720 TAAGTTGTAG
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.03, C:0.45, G:0.18, T:0.34
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:45078218 original size:11 final size:9
Alignment explanation
Indices: 45078170--45078585 Score: 73
Period size: 7 Copynumber: 48.0 Consensus size: 9
45078160 AATTGCAATG
45078170 GTAAGTTAT
1 GTAAGTTAT
45078179 GTAAGTTAT
1 GTAAGTTAT
45078188 GTAAGTTAAAT
1 GTAAGTT--AT
45078199 GT-A-TTAT
1 GTAAGTTAT
45078206 GTAAGTTAAAT
1 GTAAGTT--AT
45078217 GTAAG-T-T
1 GTAAGTTAT
45078224 GTAAGTTAT
1 GTAAGTTAT
*
45078233 -TATGTATTAT
1 GTAAG--TTAT
45078243 GTAAG-T-T
1 GTAAGTTAT
45078250 GTAAGTTAAAT
1 GTAAGTT--AT
*
45078261 GT-A-TTGT
1 GTAAGTTAT
45078268 GTAAG-T-T
1 GTAAGTTAT
45078275 GTAAGTTAAAT
1 GTAAGTT--AT
45078286 GT-A-TTAT
1 GTAAGTTAT
45078293 GTAAG-T-T
1 GTAAGTTAT
45078300 GTAAGTTAT
1 GTAAGTTAT
*
45078309 -TATGTATTAT
1 GTAAG--TTAT
45078319 GTAAG-T-T
1 GTAAGTTAT
45078326 GTAAGTTAT
1 GTAAGTTAT
* *
45078335 -TATGTATTGT
1 GTAAG--TTAT
45078345 GTAAG-T-T
1 GTAAGTTAT
*
45078352 GCAAGTTAAAT
1 GTAAGTT--AT
45078363 GT-A-TTAT
1 GTAAGTTAT
45078370 GTAAG-T-T
1 GTAAGTTAT
45078377 GTAAGTTAT
1 GTAAGTTAT
*
45078386 -TATGTATTAT
1 GTAAG--TTAT
45078396 GTAAG-T-T
1 GTAAGTTAT
45078403 GTAAGTTAT
1 GTAAGTTAT
* *
45078412 -TATGTATTGT
1 GTAAG--TTAT
45078422 GTAAG-T-T
1 GTAAGTTAT
45078429 GTAAGTTAT
1 GTAAGTTAT
*
45078438 -TATGTATTAT
1 GTAAG--TTAT
45078448 GTAAG-T-T
1 GTAAGTTAT
45078455 GTAAGTTAT
1 GTAAGTTAT
*
45078464 -TATGTATTAT
1 GTAAG--TTAT
* *
45078474 GTCAGTCAAAT
1 GTAAGT--TAT
45078485 GT-A-TTAT
1 GTAAGTTAT
45078492 GTAAG-T-T
1 GTAAGTTAT
45078499 GTAAGTTAAAT
1 GTAAGTT--AT
45078510 GT-A-TTAT
1 GTAAGTTAT
45078517 GTAAG-T-T
1 GTAAGTTAT
45078524 GTAAGTTAT
1 GTAAGTTAT
*
45078533 -TATGTATTAT
1 GTAAG--TTAT
*
45078543 GTAAGTAAT
1 GTAAGTTAT
45078552 GTAAGTTAAAT
1 GTAAGTT--AT
45078563 GT-A-TTAT
1 GTAAGTTAT
45078570 GTAAG-T-T
1 GTAAGTTAT
45078577 GTAAGTTAT
1 GTAAGTTAT
45078586 TATGTATTAT
Statistics
Matches: 301, Mismatches: 26, Indels: 160
0.62 0.05 0.33
Matches are distributed among these distances:
7 104 0.35
8 56 0.19
9 50 0.17
10 38 0.13
11 53 0.18
ACGTcount: A:0.33, C:0.01, G:0.20, T:0.46
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:45078249 original size:26 final size:26
Alignment explanation
Indices: 45078215--45078595 Score: 554
Period size: 26 Copynumber: 15.1 Consensus size: 26
45078205 TGTAAGTTAA
45078215 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
45078241 ATGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* *
45078266 GTGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
45078291 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
45078317 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* * *
45078343 GTGTAAGTTGCAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
45078368 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
45078394 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
45078420 GTGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
45078446 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* *
45078472 ATGTCA---GTCA---A--ATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
45078490 ATGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
45078515 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
45078541 ATGTAAGTAATGTAAGTTA-AATGTATT
1 ATGTAAGT--TGTAAGTTATTATGTATT
45078568 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
45078594 AT
1 AT
45078596 TTAATAAAAT
Statistics
Matches: 323, Mismatches: 19, Indels: 26
0.88 0.05 0.07
Matches are distributed among these distances:
18 12 0.04
20 1 0.00
21 3 0.01
23 3 0.01
24 1 0.00
25 102 0.32
26 177 0.55
27 15 0.05
28 9 0.03
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.47
Consensus pattern (26 bp):
ATGTAAGTTGTAAGTTATTATGTATT
Found at i:45078565 original size:53 final size:51
Alignment explanation
Indices: 45078215--45078595 Score: 564
Period size: 51 Copynumber: 7.5 Consensus size: 51
45078205 TGTAAGTTAA
45078215 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTATT
* * *
45078266 GTGTAAGTTGTAAGTTA-AATGTATTATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTA-AATGTATT
* *
45078317 ATGTAAGTTGTAAGTTATTATGTATTGTGTAAGTTGCAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTATT
*
45078368 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTA-AATGTATT
*
45078420 GTGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTT--AT-TATGT
1 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTAT-T
* * *
45078469 AT-T-A--TGTCAGTCA-AATGTATTATGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTATT
45078515 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTAATGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGT--TGTAAGTTAAATGTATT
45078568 ATGTAAGTTGTAAGTTATTATGTATTAT
1 ATGTAAGTTGTAAGTTATTATGTATTAT
45078596 TTAATAAAAT
Statistics
Matches: 297, Mismatches: 19, Indels: 26
0.87 0.06 0.08
Matches are distributed among these distances:
44 23 0.08
45 7 0.02
46 5 0.02
47 5 0.02
48 5 0.02
49 4 0.01
50 31 0.10
51 102 0.34
52 70 0.24
53 45 0.15
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.47
Consensus pattern (51 bp):
ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTATT
Found at i:45078588 original size:19 final size:19
Alignment explanation
Indices: 45078390--45078591 Score: 113
Period size: 19 Copynumber: 10.5 Consensus size: 19
45078380 AGTTATTATG
45078390 TATTATGTAAGTTGTAAGT
1 TATTATGTAAGTTGTAAGT
45078409 TATTATGT-A-TTGT--GT
1 TATTATGTAAGTTGTAAGT
* * * *
45078424 AAGT-TGTAAGTTATTA-T
1 TATTATGTAAGTTGTAAGT
45078441 GTATTATGTAAGTTGTAAGT
1 -TATTATGTAAGTTGTAAGT
* *
45078461 TATTATGTATTATGTCAGTCAAAT
1 TATTATGTA--A-GT-TGT-AAGT
45078485 GTATTATGTAAGTTGTAAGTTAAAT
1 -TATTATGTAAGTTGTAAG-----T
45078510 GTATTATGTAAGTTGTAAGT
1 -TATTATGTAAGTTGTAAGT
*
45078530 TATTATGT-ATTATGTAAG-
1 TATTATGTAAGT-TGTAAGT
*
45078548 TA--ATGTAAG-T-TAAAT
1 TATTATGTAAGTTGTAAGT
45078563 GTATTATGTAAGTTGTAAGT
1 -TATTATGTAAGTTGTAAGT
45078583 TATTATGTA
1 TATTATGTA
45078592 TTATTTAATA
Statistics
Matches: 142, Mismatches: 15, Indels: 52
0.68 0.07 0.25
Matches are distributed among these distances:
14 6 0.04
15 6 0.04
16 9 0.06
17 6 0.04
18 14 0.10
19 51 0.36
20 8 0.06
21 3 0.02
22 4 0.03
23 3 0.02
24 3 0.02
25 29 0.20
ACGTcount: A:0.33, C:0.01, G:0.19, T:0.47
Consensus pattern (19 bp):
TATTATGTAAGTTGTAAGT
Found at i:45078715 original size:73 final size:73
Alignment explanation
Indices: 45078632--45078781 Score: 300
Period size: 73 Copynumber: 2.1 Consensus size: 73
45078622 ACATTACTAA
45078632 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
45078697 TATTTTTT
66 TATTTTTT
45078705 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
45078770 TATTTTTT
66 TATTTTTT
45078778 TATA
1 TATA
45078782 TTTTATTTTA
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 77 1.00
ACGTcount: A:0.41, C:0.07, G:0.01, T:0.51
Consensus pattern (73 bp):
TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
TATTTTTT
Found at i:45078775 original size:35 final size:35
Alignment explanation
Indices: 45078663--45078775 Score: 104
Period size: 35 Copynumber: 3.1 Consensus size: 35
45078653 ATAAAATAAC
45078663 ATTTTATTTTAATAGTCAATTTTAATATTCCACAT
1 ATTTTATTTTAATAGTCAATTTTAATATTCCACAT
* * **** *
45078698 ATTTT-TTTATAATTATTAATAATATTTAATAAAATA-AC
1 ATTTTATTT-TAA-TAGT--CAAT-TTTAATATTCCACAT
45078736 ATTTTATTTTAATAGTCAATTTTAATATTCCACAT
1 ATTTTATTTTAATAGTCAATTTTAATATTCCACAT
45078771 ATTTT
1 ATTTT
45078776 TTTATATTTT
Statistics
Matches: 57, Mismatches: 14, Indels: 14
0.67 0.16 0.16
Matches are distributed among these distances:
34 11 0.19
35 17 0.30
36 3 0.05
37 3 0.05
38 12 0.21
39 11 0.19
ACGTcount: A:0.38, C:0.08, G:0.02, T:0.52
Consensus pattern (35 bp):
ATTTTATTTTAATAGTCAATTTTAATATTCCACAT
Found at i:45078946 original size:13 final size:13
Alignment explanation
Indices: 45078928--45078998 Score: 106
Period size: 13 Copynumber: 5.5 Consensus size: 13
45078918 ATTTATAATT
45078928 ATTTAAGTAATAA
1 ATTTAAGTAATAA
* *
45078941 ATTTAAGTAACAT
1 ATTTAAGTAATAA
45078954 ATTTAAGTAATAA
1 ATTTAAGTAATAA
* *
45078967 ATTTAAGTAACAT
1 ATTTAAGTAATAA
45078980 ATTTAAGTAATAA
1 ATTTAAGTAATAA
45078993 ATTTAA
1 ATTTAA
45078999 ACAAATTTTA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 50 1.00
ACGTcount: A:0.51, C:0.03, G:0.07, T:0.39
Consensus pattern (13 bp):
ATTTAAGTAATAA
Found at i:45078957 original size:26 final size:26
Alignment explanation
Indices: 45078927--45078998 Score: 144
Period size: 26 Copynumber: 2.8 Consensus size: 26
45078917 TATTTATAAT
45078927 TATTTAAGTAATAAATTTAAGTAACA
1 TATTTAAGTAATAAATTTAAGTAACA
45078953 TATTTAAGTAATAAATTTAAGTAACA
1 TATTTAAGTAATAAATTTAAGTAACA
45078979 TATTTAAGTAATAAATTTAA
1 TATTTAAGTAATAAATTTAA
45078999 ACAAATTTTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.40
Consensus pattern (26 bp):
TATTTAAGTAATAAATTTAAGTAACA
Found at i:45079025 original size:17 final size:17
Alignment explanation
Indices: 45079003--45079046 Score: 88
Period size: 17 Copynumber: 2.6 Consensus size: 17
45078993 ATTTAAACAA
45079003 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
45079020 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
45079037 ATTTTAGTAA
1 ATTTTAGTAA
45079047 TAAATTTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (17 bp):
ATTTTAGTAAGTAATGT
Found at i:45082367 original size:23 final size:24
Alignment explanation
Indices: 45082341--45082391 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
45082331 TAATTTAAAT
45082341 ATTATCAA-TATTTAAAATTATT-A
1 ATTATCAATTATTT-AAATTATTCA
* *
45082364 ATTATTAATTATTTATATTATTCA
1 ATTATCAATTATTTAAATTATTCA
45082388 ATTA
1 ATTA
45082392 ATGTATTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 14 0.58
24 10 0.42
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (24 bp):
ATTATCAATTATTTAAATTATTCA
Found at i:45082375 original size:14 final size:17
Alignment explanation
Indices: 45082356--45082391 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
45082346 CAATATTTAA
45082356 AATTA-TTA-ATTATT-
1 AATTATTTATATTATTC
45082370 AATTATTTATATTATTC
1 AATTATTTATATTATTC
45082387 AATTA
1 AATTA
45082392 ATGTATTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 5 0.26
15 3 0.16
16 6 0.32
17 5 0.26
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.56
Consensus pattern (17 bp):
AATTATTTATATTATTC
Found at i:45083651 original size:190 final size:190
Alignment explanation
Indices: 45083328--45083688 Score: 616
Period size: 190 Copynumber: 1.9 Consensus size: 190
45083318 GCGTTTTTCA
45083328 ATAAGCGCCACTAATTCTAATATACATCAATACCAAACTCTGCGTTTTGGTGTGCATATCTTGCG
1 ATAAGCGCCACTAATTCTAATATACATCAATACCAAACTCTGCGTTTTGGTGTGCATATCTTGCG
* *
45083393 GCGCTTAACGTTAAGTGCCGCTAATACTGTTATGTAGCGGCGTTTTATTGTAAACGCCACTAATT
66 GCGCTTAACGTAAAGCGCCGCTAATACTGTTATGTAGCGGCGTTTTATTGTAAACGCCACTAATT
*
45083458 ATAGTATACATCAAGACCAAAACGTTGAGTTTTAGTTAAGAAATATAGCGGCGCTTTATC
131 ATAGTATACATCAAGACCAAAACGCTGAGTTTTAGTTAAGAAATATAGCGGCGCTTTATC
*
45083518 ATAAGCGCCACTAATTCTAATATACCTCAATACCAAACTCTGCGTTTTGGTGTGCATATCTTGCG
1 ATAAGCGCCACTAATTCTAATATACATCAATACCAAACTCTGCGTTTTGGTGTGCATATCTTGCG
* *
45083583 GCGCTTAAC-TGAAAGCGCCGCTAATACTGTTATTTAGCGGCGTTTTATTGTAAGCGCCACTAAT
66 GCGCTTAACGT-AAAGCGCCGCTAATACTGTTATGTAGCGGCGTTTTATTGTAAACGCCACTAAT
* * * *
45083647 TATAGTATACATCGATACCAAAACGCTGCGTTTTGGTTAAGA
130 TATAGTATACATCAAGACCAAAACGCTGAGTTTTAGTTAAGA
45083689 TTTTTGCGGC
Statistics
Matches: 160, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
189 1 0.01
190 159 0.99
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (190 bp):
ATAAGCGCCACTAATTCTAATATACATCAATACCAAACTCTGCGTTTTGGTGTGCATATCTTGCG
GCGCTTAACGTAAAGCGCCGCTAATACTGTTATGTAGCGGCGTTTTATTGTAAACGCCACTAATT
ATAGTATACATCAAGACCAAAACGCTGAGTTTTAGTTAAGAAATATAGCGGCGCTTTATC
Found at i:45083768 original size:113 final size:112
Alignment explanation
Indices: 45083503--45083835 Score: 352
Period size: 114 Copynumber: 2.9 Consensus size: 112
45083493 TTAAGAAATA
* * * * *
45083503 TAGCGGCGCTTTATCATAAGCGCCACTAATTCTAATATACCTCAATACC-AAACTCTGCGTTTTG
1 TAGCGGCGTTTTATCATAAGCGCCACTAATTATAGTATACATCAATACCAAAACGCTGCGTTTTG
* **
45083567 GTGT-GCATATCTTGCGGCGCTTAACTGAAAGCGCCGCTAATACTGTTATT
66 GT-TAG-AT-TTTTGCGGCGCTTAACACAAAGCGCCGCTAATAC-GTTATT
** *
45083617 TAGCGGCGTTTTATTGTAAGCGCCACTAATTATAGTATACATCGATACCAAAACGCTGCGTTTTG
1 TAGCGGCGTTTTATCATAAGCGCCACTAATTATAGTATACATCAATACCAAAACGCTGCGTTTTG
** * *
45083682 GTTAAGATTTTTGCGGCGCTTCCCACAATGCGCCGCTATTAC-TTACTT
66 GTT-AGATTTTTGCGGCGCTTAACACAAAGCGCCGCTAATACGTTA-TT
* * * *
45083730 TAGCGGCGTTTTATCATAATCGCCACTAATTATTGTATACATCAATACAAAAACGATGCGTTTTG
1 TAGCGGCGTTTTATCATAAGCGCCACTAATTATAGTATACATCAATACCAAAACGCTGCGTTTTG
* *
45083795 GTCTTGAGA-TTTTGCGGCGCATAAC-CAAAAACGCCGCTAAT
66 G--TT-AGATTTTTGCGGCGCTTAACAC-AAAGCGCCGCTAAT
45083836 TATGTTCTTT
Statistics
Matches: 183, Mismatches: 29, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
112 3 0.02
113 62 0.34
114 94 0.51
115 23 0.13
116 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.32
Consensus pattern (112 bp):
TAGCGGCGTTTTATCATAAGCGCCACTAATTATAGTATACATCAATACCAAAACGCTGCGTTTTG
GTTAGATTTTTGCGGCGCTTAACACAAAGCGCCGCTAATACGTTATT
Found at i:45086520 original size:26 final size:27
Alignment explanation
Indices: 45086491--45086551 Score: 65
Period size: 26 Copynumber: 2.3 Consensus size: 27
45086481 AACTATTTAC
*
45086491 AAATATTTAAATATTATT-AAAA-TAAA
1 AAATATTTAAA-ACTATTGAAAATTAAA
*
45086517 AAATA-GTAAAACTATTGAAAATTAAA
1 AAATATTTAAAACTATTGAAAATTAAA
*
45086543 TAATATTTA
1 AAATATTTA
45086552 GTAATTAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
24 5 0.18
25 8 0.29
26 13 0.46
27 2 0.07
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.36
Consensus pattern (27 bp):
AAATATTTAAAACTATTGAAAATTAAA
Found at i:45091084 original size:27 final size:27
Alignment explanation
Indices: 45091054--45091121 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
45091044 CGTTCCAGGT
* * *
45091054 TCGGGTCCCTTGGAAAGAGGGTTTATG
1 TCGGGTCCCATCGAAAGAGGGTTCATG
* *
45091081 TCGGGTCCGATCGAGAGAGGGTTCATG
1 TCGGGTCCCATCGAAAGAGGGTTCATG
*
45091108 TCGGGTCCCCTCGA
1 TCGGGTCCCATCGA
45091122 TAATGTTAAT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.16, C:0.22, G:0.37, T:0.25
Consensus pattern (27 bp):
TCGGGTCCCATCGAAAGAGGGTTCATG
Found at i:45094915 original size:3 final size:3
Alignment explanation
Indices: 45094907--45094932 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
45094897 ATGCAGAGCA
45094907 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
45094933 TGAATCGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:45102368 original size:52 final size:51
Alignment explanation
Indices: 45102344--45102685 Score: 443
Period size: 52 Copynumber: 6.8 Consensus size: 51
45102334 ATCAAGTGAC
** **
45102344 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGT-G
*
45102396 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGT-G
*
45102448 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC-----
1 AAAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
** **
45102494 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGT-G
*
45102546 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC-----
1 AAAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
*
45102592 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 AAAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
* **
45102643 AAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAG
1 -AAAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAG
45102686 AGATAGAGTG
Statistics
Matches: 259, Mismatches: 19, Indels: 24
0.86 0.06 0.08
Matches are distributed among these distances:
46 85 0.33
52 174 0.67
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.29
Consensus pattern (51 bp):
AAAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
Found at i:45102498 original size:150 final size:150
Alignment explanation
Indices: 45102278--45102685 Score: 693
Period size: 150 Copynumber: 2.7 Consensus size: 150
45102268 TTTGAGTACT
45102278 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGA
1 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGA
45102343 CAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGT
66 CAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGT
45102408 AATAGCTTCGGCTATACTTA
131 AATAGCTTCGGCTATACTTA
45102428 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGA
1 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGA
45102493 CAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGT
66 CAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGT
45102558 AATAGCTTCGGCTATACTTA
131 AATAGCTTCGGCTATACTTA
* *
45102578 TCTGATCAAGTGAC------AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
1 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGA
*
45102637 CAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAG
66 C------AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAG
45102686 AGATAGAGTG
Statistics
Matches: 249, Mismatches: 3, Indels: 12
0.94 0.01 0.05
Matches are distributed among these distances:
144 44 0.18
150 205 0.82
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.29
Consensus pattern (150 bp):
TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGA
CAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGT
AATAGCTTCGGCTATACTTA
Found at i:45102663 original size:98 final size:98
Alignment explanation
Indices: 45102298--45102702 Score: 534
Period size: 98 Copynumber: 4.1 Consensus size: 98
45102288 TGACAAGTGG
* * *
45102298 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC------AAAGTGATAAGTG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
* *
45102357 GTAGCTTTAGCTACACTTATCTGATCAAGTGAC
66 ATAGCTTCAGCTACACTTATCTGATCAAGTGAC
* *
45102390 AAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTGGAAAGTGA
1 ------AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGA
* *
45102455 TAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC
60 TAAGTAATAGCTTCAGCTACACTTATCTGATCAAGTGAC
* **
45102494 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
* *
45102559 ATAGCTTCGGCTATACTTATCTGATCAAGTGAC
66 ATAGCTTCAGCTACACTTATCTGATCAAGTGAC
* *
45102592 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
* * *
45102657 ATAGCTTTAGCTACACTTATCTGATCAAGAGAT
66 ATAGCTTCAGCTACACTTATCTGATCAAGTGAC
*
45102690 AGAGTGATAAGTG
1 AAAGTGATAAGTG
45102703 GCTACACTTA
Statistics
Matches: 280, Mismatches: 21, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
98 239 0.85
104 41 0.15
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (98 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
ATAGCTTCAGCTACACTTATCTGATCAAGTGAC
Found at i:45102709 original size:37 final size:37
Alignment explanation
Indices: 45102666--45102885 Score: 363
Period size: 37 Copynumber: 6.0 Consensus size: 37
45102656 GATAGCTTTA
* * *
45102666 GCTACACTTATCTGATCAAGAGATAGAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
45102703 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
45102740 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
45102777 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
45102814 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
45102851 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
45102886 ATCATACGTA
Statistics
Matches: 174, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
35 11 0.06
36 4 0.02
37 159 0.91
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:45109152 original size:61 final size:58
Alignment explanation
Indices: 45109006--45109168 Score: 166
Period size: 61 Copynumber: 2.7 Consensus size: 58
45108996 TATTAATTTT
* * * * *
45109006 TTAATATTATATATTATGATTTTTTTAATTCATACTTTAATAAAAATTATATTAAGAATGTTA
1 TTAA-ATTATATATTAT--TTTATTAAATT-ATA-TTTAATAATAATTATATTAAGAATATAA
* *
45109069 TTAAATTATATATTATTTTATTAAATTGTATTTAATAATAATTATGTTAA-AATATAA
1 TTAAATTATATATTATTTTATTAAATTATATTTAATAATAATTATATTAAGAATATAA
*
45109126 TTAAATTATTTATTTTCATTTTTATTAAATTATATTTAATAAT
1 TTAAATTA--TATATT-A-TTTTATTAAATTATATTTAATAAT
45109169 TATCTTTTTA
Statistics
Matches: 87, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
57 13 0.15
58 18 0.21
59 7 0.08
60 10 0.11
61 23 0.26
62 12 0.14
63 4 0.05
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (58 bp):
TTAAATTATATATTATTTTATTAAATTATATTTAATAATAATTATATTAAGAATATAA
Found at i:45110274 original size:20 final size:21
Alignment explanation
Indices: 45110249--45110290 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
45110239 AGTGAATTAC
*
45110249 CTTGGA-TTCTATAGTAAAAA
1 CTTGGATTTCTATAGGAAAAA
*
45110269 CTTGGATTTTTATAGGAAAAA
1 CTTGGATTTCTATAGGAAAAA
45110290 C
1 C
45110291 ATTTTTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.36
Consensus pattern (21 bp):
CTTGGATTTCTATAGGAAAAA
Found at i:45122171 original size:24 final size:24
Alignment explanation
Indices: 45122144--45122199 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
45122134 GGTATACTTT
*
45122144 AATAATAATAACATAAACT-AAATA
1 AATAA-AATAACATAAAATAAAATA
* *
45122168 AATAAAGTAACTTAAAATAAAATA
1 AATAAAATAACATAAAATAAAATA
45122192 AATGAAAA
1 AAT-AAAA
45122200 ATACACGATA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 10 0.38
24 13 0.50
25 3 0.12
ACGTcount: A:0.68, C:0.05, G:0.04, T:0.23
Consensus pattern (24 bp):
AATAAAATAACATAAAATAAAATA
Found at i:45123905 original size:44 final size:43
Alignment explanation
Indices: 45123838--45124746 Score: 363
Period size: 44 Copynumber: 19.8 Consensus size: 43
45123828 TTCAATCTTC
* *
45123838 AATCTACTCCACTGTAACTTCAGGGAGATGAGATTTGTGACTTT
1 AATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGT-ACTTT
*
45123882 AATATACTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTT
1 AATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTA-CTTT
* * * * * * * * *
45123926 AATTTGCTCTACTGCAACTTCAGAGAGATGATACTCGTATCTTC
1 AATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTA-CTTT
* * * * *
45123970 AATCTATTCCATTGTAACTTCAGGGAGATGAGATTTGTAACTTC
1 AATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGT-ACTTT
* *
45124014 AATATACTCCACTACAACTTCAGGGAGATAAGATTTGTGACTTT
1 AATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGT-ACTTT
* *
45124058 AATCTACTCCATTGCAACTTTAGGGAGATAAGATTTGTAACTTGTAGCTT
1 AATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGT-AC---T---TT
** * * * *
45124108 CAATCTGTTCCACTGC-ACTTCAGGGAAATAAGAATCGCTATCTTC
1 -AATCTACTCCACTGCAACTTCAGGGAGATAAGATTTG-TA-CTTT
* * * *
45124153 AATCTGCTCCATTGCATCTTTAGGGAGATAAGATTTGTGACTTT
1 AATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGT-ACTTT
* * *
45124197 AATCTACTCCATTGTAACTTTAGGGAGATAAGATTTGTAACTTGT
1 AATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGT-ACTT-T
* * * * *
45124242 AGCATCAATCTGTTCCACTGC-ACTTTAGGGAAATAAGATTCGCTATCTTC
1 A--ATCTA-C---TCCACTGCAACTTCAGGGAGATAAGATTTG-TA-CTTT
* * * * * *
45124292 AATTTGCTCCATTGCATCTACAGAGAGATAAGATTTGTAACTTGTAGCTTT
1 AATCTACTCCACTGCAACTTCAGGGAGATAAGA----T---TTGTA-CTTT
** * * * * *
45124343 AATCTGTTCCACTGTAAATTCAGGGAAATAAGATTCGCTA-TAATC
1 AATCTACTCCACTGCAACTTCAGGGAGATAAGATTTG-TACT--TT
* ** * *
45124388 AATCTGCTTTACTACAACTTTAGGGAGATAAGATTTGTAACTTGTAGCTT
1 AATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGT-AC---T---TT
** * * * * *
45124438 CAATCTGTTTCACTGC-ACTTCAGAGAAATAAGATTCGCTATCTTC
1 -AATCTACTCCACTGCAACTTCAGGGAGATAAGATTTG-TA-CTTT
* * *
45124483 AATC-AGCTCCACTACATCTTCAGGGAGATAAGATTTATAACTTTTAGCTTT
1 AATCTA-CTCCACTGCAACTTCAGGGAGATAAG----AT---TTGTA-CTTT
* * * * * *
45124534 AATCTATTCCATTGCAACTTCAGGGAAATAATATTCGTTATATTT
1 AATCTACTCCACTGCAACTTCAGGGAGATAAGATTTG-TA-CTTT
* ** * * * *
45124579 AATTTGTTTCACTGCAACTTTAGGGAGATAAGACTTATAGCTTT
1 AATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTA-CTTT
* ** * * * * *
45124623 AATTTGTTCTACTACAATTTCAGAGAGATAAGATTTGCTATCTTC
1 AATCTACTCCACTGCAACTTCAGGGAGATAAGATTTG-TA-CTTT
* *
45124668 AATCTACTCCGCTGTAACTTCAGGGAGAT-AGAATTTGTGACTTT
1 AATCTACTCCACTGCAACTTCAGGGAGATAAG-ATTTGT-ACTTT
** * *
45124712 AATCTTTTCCACTGCCACTTCAGGAAGATAAGATT
1 AATCTACTCCACTGCAACTTCAGGGAGATAAGATT
45124747 CGTCACGGTG
Statistics
Matches: 644, Mismatches: 164, Indels: 114
0.70 0.18 0.12
Matches are distributed among these distances:
43 2 0.00
44 320 0.50
45 144 0.22
47 9 0.01
48 5 0.01
49 4 0.01
50 60 0.09
51 96 0.15
52 4 0.01
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (43 bp):
AATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTACTTT
Found at i:45124074 original size:132 final size:135
Alignment explanation
Indices: 45123832--45124334 Score: 478
Period size: 139 Copynumber: 3.7 Consensus size: 135
45123822 TGTTGCTTCA
* * *
45123832 ATCTTCAATCTACTCCACTGTAACTTCAGGGAGATGAGATTTGTGACTTTAATATACTCCACTGC
1 ATCTTCAATCTATTCCACTGTAACTTCAGGGAGATGAGATTTGTAACTTCAATATACTCCACTGC
* * * * * *
45123897 AACTTCAGGGAGATAAGATTTGT-AGCTTTAATTTGCTCTACTGCAACTTCAGAGAGAT-GA-T-
66 AACTTCAGGGAGATAAGATTTGTGA-CTTTAATCTACTCCATTGCAACTTTAGGGAGATAGATTA
45123958 ACTCGT
130 ACTCGT
* *
45123964 ATCTTCAATCTATTCCATTGTAACTTCAGGGAGATGAGATTTGTAACTTCAATATACTCCACTAC
1 ATCTTCAATCTATTCCACTGTAACTTCAGGGAGATGAGATTTGTAACTTCAATATACTCCACTGC
45124029 AACTTCAGGGAGATAAGATTTGTGACTTTAATCTACTCCATTGCAACTTTAGGGAGATAAGATTT
66 AACTTCAGGGAGATAAGATTTGTGACTTTAATCTACTCCATTGCAACTTTAGGGAGAT-AGA--T
*
45124094 GTAACTTGT
128 -TAACTCGT
* * * * * * * * * * *
45124103 AGCTTCAATCTGTTCCACTG-CACTTCAGGGAAATAAGAATCGCTATCTTCAATCTGCTCCATTG
1 ATCTTCAATCTATTCCACTGTAACTTCAGGGAGATGAGATTTG-TAACTTCAATATACTCCACTG
* * *
45124167 CATCTTTAGGGAGATAAGATTTGTGACTTTAATCTACTCCATTGTAACTTTAGGGAGATAAGATT
65 CAACTTCAGGGAGATAAGATTTGTGACTTTAATCTACTCCATTGCAACTTTAGGGAGAT-AGA--
*
45124232 TGTAACTTGT
127 T-TAACTCGT
* * * * * * * * * * * *
45124242 AGCATCAATCTGTTCCACTG-CACTTTAGGGAAATAAGATTCGCTATCTTCAATTTGCTCCATTG
1 ATCTTCAATCTATTCCACTGTAACTTCAGGGAGATGAGATTTG-TAACTTCAATATACTCCACTG
* * * *
45124306 CATCTACAGAGAGATAAGATTTGTAACTT
65 CAACTTCAGGGAGATAAGATTTGTGACTT
45124335 GTAGCTTTAA
Statistics
Matches: 326, Mismatches: 36, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
132 110 0.34
133 1 0.00
134 2 0.01
138 18 0.06
139 195 0.60
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.34
Consensus pattern (135 bp):
ATCTTCAATCTATTCCACTGTAACTTCAGGGAGATGAGATTTGTAACTTCAATATACTCCACTGC
AACTTCAGGGAGATAAGATTTGTGACTTTAATCTACTCCATTGCAACTTTAGGGAGATAGATTAA
CTCGT
Found at i:45124183 original size:139 final size:139
Alignment explanation
Indices: 45124034--45124334 Score: 521
Period size: 139 Copynumber: 2.2 Consensus size: 139
45124024 ACTACAACTT
45124034 CAGGGAGATAAGATTTGTGACTTTAATCTACTCCATTGCAACTTTAGGGAGATAAGATTTGTAAC
1 CAGGGAGATAAGATTTGTGACTTTAATCTACTCCATTGCAACTTTAGGGAGATAAGATTTGTAAC
*
45124099 TTGTAGCTTCAATCTGTTCCACTGCACTTCAGGGAAATAAGAATCGCTATCTTCAATCTGCTCCA
66 TTGTAGCATCAATCTGTTCCACTGCACTTCAGGGAAATAAGAATCGCTATCTTCAATCTGCTCCA
*
45124164 TTGCATCTT
131 TTGCATCTA
* *
45124173 TAGGGAGATAAGATTTGTGACTTTAATCTACTCCATTGTAACTTTAGGGAGATAAGATTTGTAAC
1 CAGGGAGATAAGATTTGTGACTTTAATCTACTCCATTGCAACTTTAGGGAGATAAGATTTGTAAC
* * *
45124238 TTGTAGCATCAATCTGTTCCACTGCACTTTAGGGAAATAAGATTCGCTATCTTCAATTTGCTCCA
66 TTGTAGCATCAATCTGTTCCACTGCACTTCAGGGAAATAAGAATCGCTATCTTCAATCTGCTCCA
45124303 TTGCATCTA
131 TTGCATCTA
* *
45124312 CAGAGAGATAAGATTTGTAACTT
1 CAGGGAGATAAGATTTGTGACTT
45124335 GTAGCTTTAA
Statistics
Matches: 152, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
139 152 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (139 bp):
CAGGGAGATAAGATTTGTGACTTTAATCTACTCCATTGCAACTTTAGGGAGATAAGATTTGTAAC
TTGTAGCATCAATCTGTTCCACTGCACTTCAGGGAAATAAGAATCGCTATCTTCAATCTGCTCCA
TTGCATCTA
Found at i:45124250 original size:95 final size:94
Alignment explanation
Indices: 45124149--45124564 Score: 331
Period size: 95 Copynumber: 4.4 Consensus size: 94
45124139 GAATCGCTAT
* * *
45124149 CTTCAATCTGCTCCATTGCATCTTTAGGGAGATAAGATTTGTGACTTTAATCTACTCCATTGTAA
1 CTTCAATCTGTTCCACTGCA-CTTTAGGGAAATAAGATTTGTGACTTTAATCTACTCCATTGTAA
45124214 CTTTAGGGAGATAAGATTTGTAACTTGTAG
65 CTTTAGGGAGATAAGATTTGTAACTTGTAG
* * * * * *
45124244 CATCAATCTGTTCCACTGCACTTTAGGGAAATAAGATTCGCT-ATCTTCAATTTGCTCCATTGCA
1 CTTCAATCTGTTCCACTGCACTTTAGGGAAATAAGATTTG-TGA-CTTTAATCTACTCCATTGTA
* ** *
45124308 TCTACAGAGAGATAAGATTTGTAACTTGTAG
64 ACTTTAGGGAGATAAGATTTGTAACTTGTAG
* * * * * * * * * *
45124339 CTTTAATCTGTTCCACTGTAAATTCAGGGAAATAAGA-TT-CG-CTATAATCAATCTGCTTTACT
1 CTTCAATCTGTTCCACTG-CACTTTAGGGAAATAAGATTTGTGACTTTAATCTA-CTCCATT-GT
45124401 ACAACTTTAGGGAGATAAGATTTGTAACTTGTAG
63 --AACTTTAGGGAGATAAGATTTGTAACTTGTAG
* * * * * * **
45124435 CTTCAATCTGTTTCACTGCACTTCAGAGAAATAAGATTCGCT-ATCTTCAATC-AGCTCCACTAC
1 CTTCAATCTGTTCCACTGCACTTTAGGGAAATAAGATTTG-TGA-CTTTAATCTA-CTCCATTGT
* * * *
45124498 ATCTTCAGGGAGATAAGATTTATAACTTTTAG
63 AACTTTAGGGAGATAAGATTTGTAACTTGTAG
* * * *
45124530 CTTTAATCTATTCCATTGCAACTTCAGGGAAATAA
1 CTTCAATCTGTTCCACTGC-ACTTTAGGGAAATAA
45124565 TATTCGTTAT
Statistics
Matches: 250, Mismatches: 57, Indels: 27
0.75 0.17 0.08
Matches are distributed among these distances:
92 5 0.02
93 5 0.02
94 19 0.08
95 136 0.54
96 74 0.30
98 5 0.02
99 6 0.02
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (94 bp):
CTTCAATCTGTTCCACTGCACTTTAGGGAAATAAGATTTGTGACTTTAATCTACTCCATTGTAAC
TTTAGGGAGATAAGATTTGTAACTTGTAG
Found at i:45124423 original size:191 final size:191
Alignment explanation
Indices: 45124212--45124611 Score: 586
Period size: 191 Copynumber: 2.1 Consensus size: 191
45124202 ACTCCATTGT
* *
45124212 AACTTTAGGGAGATAAGATTTGTAACTTGTAGCATCAATCTGTTCCACTGCACTTTAGGGAAATA
1 AACTTTAGGGAGATAAGATTTGTAACTTGTAGCATCAATCTGTTCCACTGCACTTCAGAGAAATA
** * * *
45124277 AGATTCGCTATCTTCAATTTGCTCCATTGCATCTACAGAGAGATAAGATTTGTAACTTGTAGCTT
66 AGATTCGCTATCTTCAATCAGCTCCACTACATCTACAGAGAGATAAGATTTATAACTTGTAGCTT
* *
45124342 TAATCTGTTCCACTGTAAATTCAGGGAAATAAGATTCGCTATAATCAATCTGCTTT-ACTAC
131 TAATCTATTCCACTGCAAATTCAGGGAAATAAGATTCGCTATAATCAATCTG-TTTCACTAC
* *
45124403 AACTTTAGGGAGATAAGATTTGTAACTTGTAGCTTCAATCTGTTTCACTGCACTTCAGAGAAATA
1 AACTTTAGGGAGATAAGATTTGTAACTTGTAGCATCAATCTGTTCCACTGCACTTCAGAGAAATA
* * *
45124468 AGATTCGCTATCTTCAATCAGCTCCACTACATCTTCAGGGAGATAAGATTTATAACTTTTAGCTT
66 AGATTCGCTATCTTCAATCAGCTCCACTACATCTACAGAGAGATAAGATTTATAACTTGTAGCTT
* * * * * * * *
45124533 TAATCTATTCCATTGCAACTTCAGGGAAATAATATTCGTTATATTTAATTTGTTTCACTGC
131 TAATCTATTCCACTGCAAATTCAGGGAAATAAGATTCGCTATAATCAATCTGTTTCACTAC
45124594 AACTTTAGGGAGATAAGA
1 AACTTTAGGGAGATAAGA
45124612 CTTATAGCTT
Statistics
Matches: 186, Mismatches: 22, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
190 3 0.02
191 183 0.98
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.35
Consensus pattern (191 bp):
AACTTTAGGGAGATAAGATTTGTAACTTGTAGCATCAATCTGTTCCACTGCACTTCAGAGAAATA
AGATTCGCTATCTTCAATCAGCTCCACTACATCTACAGAGAGATAAGATTTATAACTTGTAGCTT
TAATCTATTCCACTGCAAATTCAGGGAAATAAGATTCGCTATAATCAATCTGTTTCACTAC
Found at i:45124617 original size:96 final size:95
Alignment explanation
Indices: 45124212--45124611 Score: 476
Period size: 96 Copynumber: 4.2 Consensus size: 95
45124202 ACTCCATTGT
* *
45124212 AACTTTAGGGAGATAAGATTTGTAACTTGTAGCATCAATCTGTTCCACTGCACTTTAGGGAAATA
1 AACTTTAGGGAGATAAGATTTGTAACTTGTAGCTTCAATCTGTTCCACTGCACTTCAGGGAAATA
* * * *
45124277 AGATTCGCTATCTTCAATTTGCTCCATTGC
66 AGATTCGCTATATTCAATCTGCTCCACTAC
* ** * * * *
45124307 ATCTACAGAGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTGTAAATTCAGGGAAAT
1 AACTTTAGGGAGATAAGATTTGTAACTTGTAGCTTCAATCTGTTCCACTG-CACTTCAGGGAAAT
* **
45124372 AAGATTCGCTATAATCAATCTGCTTTACTAC
65 AAGATTCGCTATATTCAATCTGCTCCACTAC
* *
45124403 AACTTTAGGGAGATAAGATTTGTAACTTGTAGCTTCAATCTGTTTCACTGCACTTCAGAGAAATA
1 AACTTTAGGGAGATAAGATTTGTAACTTGTAGCTTCAATCTGTTCCACTGCACTTCAGGGAAATA
* *
45124468 AGATTCGCTATCTTCAATCAGCTCCACTAC
66 AGATTCGCTATATTCAATCTGCTCCACTAC
* * * * * * *
45124498 ATCTTCAGGGAGATAAGATTTATAACTTTTAGCTTTAATCTATTCCATTGCAACTTCAGGGAAAT
1 AACTTTAGGGAGATAAGATTTGTAACTTGTAGCTTCAATCTGTTCCACTGC-ACTTCAGGGAAAT
* * * * * * *
45124563 AATATTCGTTATATTTAATTTGTTTCACTGC
65 AAGATTCGCTATATTCAATCTGCTCCACTAC
45124594 AACTTTAGGGAGATAAGA
1 AACTTTAGGGAGATAAGA
45124612 CTTATAGCTT
Statistics
Matches: 253, Mismatches: 50, Indels: 3
0.83 0.16 0.01
Matches are distributed among these distances:
95 124 0.49
96 129 0.51
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.35
Consensus pattern (95 bp):
AACTTTAGGGAGATAAGATTTGTAACTTGTAGCTTCAATCTGTTCCACTGCACTTCAGGGAAATA
AGATTCGCTATATTCAATCTGCTCCACTAC
Found at i:45131024 original size:42 final size:42
Alignment explanation
Indices: 45130977--45131302 Score: 271
Period size: 42 Copynumber: 7.7 Consensus size: 42
45130967 CAAAAACGCT
*
45130977 GCTAAAGATCATGTTCTTTAGCGGCGTTTTTTTCTAAGCGCC
1 GCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAGCGCC
* *
45131019 GCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAGCGAC
1 GCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAGCGCC
*
45131061 GCTAAAGAACATGATT-TTTAGCGGCGTTTTTTTTTAAGCGCC
1 GCTAAAGAACATG-TTCTTTAGCGGCGTTTTTTTCTAAGCGCC
* * * * * *
45131103 ACTGAAGGACATGATCTTTAGAGGCGTTTTTTTCTAAGCGCT
1 GCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAGCGCC
* * * * * *** * *
45131145 GCTAAAGGACATGATCTTTAGTGGCATTTGTGAATATGTGCC
1 GCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAGCGCC
** * * *** *
45131187 GCTAAAGAACATGTTCTTTAATGGCGCTTTGTAGAAAACGCC
1 GCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAGCGCC
* * * * * *
45131229 GTTAGAGATCATAATT-TTTTGCGGCGCTTTTTTTAC-AAACGCC
1 GCTAAAGAACAT-GTTCTTTAGCGGCG-TTTTTTT-CTAAGCGCC
* *
45131272 GCTAAAGAACATATTCTTTAGCGGCATTTTT
1 GCTAAAGAACATGTTCTTTAGCGGCGTTTTT
45131303 GTACAAAAAC
Statistics
Matches: 225, Mismatches: 53, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
41 1 0.00
42 193 0.86
43 31 0.14
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.36
Consensus pattern (42 bp):
GCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAGCGCC
Found at i:45131707 original size:21 final size:21
Alignment explanation
Indices: 45131683--45131733 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
45131673 TTCTTTTGAA
* *
45131683 CCTCTGCTTCTCTCGCTGTAG
1 CCTCTGCTTCCCTCGCTGCAG
*
45131704 CCTCTGCTTCCCTCGCTGCCG
1 CCTCTGCTTCCCTCGCTGCAG
45131725 CCTCTGCTT
1 CCTCTGCTT
45131734 TAAGTTGTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.02, C:0.45, G:0.18, T:0.35
Consensus pattern (21 bp):
CCTCTGCTTCCCTCGCTGCAG
Found at i:45133583 original size:45 final size:44
Alignment explanation
Indices: 45133525--45133628 Score: 113
Period size: 45 Copynumber: 2.3 Consensus size: 44
45133515 TGCAGAAACT
* *
45133525 CATATGCTTAACATTC-GAA-ATGTTTAACATTCAAAACATAGCTTAA
1 CATA-GCTTAACATTCAAAACATGCTTAACATTC-AAA-AT-GCTTAA
* *
45133571 CATAGCTAAACATTCAAAACTATGCTTAACATTCAAAATGTTTAA
1 CATAGCTTAACATTCAAAAC-ATGCTTAACATTCAAAATGCTTAA
45133616 CATAGCTTAACAT
1 CATAGCTTAACAT
45133629 AGTTTTCAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
45 27 0.54
46 8 0.16
47 3 0.06
48 12 0.24
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (44 bp):
CATAGCTTAACATTCAAAACATGCTTAACATTCAAAATGCTTAA
Found at i:45133780 original size:39 final size:38
Alignment explanation
Indices: 45133737--45133815 Score: 106
Period size: 39 Copynumber: 2.0 Consensus size: 38
45133727 CTGAAGAAAC
45133737 TGTGCCAAAACAGA-ATACCAAAAAAAGAATACCAAGTAA
1 TGTGCCAAAACA-ACATACC-AAAAAAGAATACCAAGTAA
* *
45133776 TGTGCCAAAACAATCCTACCAAAACAGAATACCAAGTAA
1 TGTGCCAAAACAA-CATACCAAAAAAGAATACCAAGTAA
45133815 T
1 T
45133816 CCACAAAGTC
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
38 1 0.03
39 31 0.86
40 4 0.11
ACGTcount: A:0.52, C:0.22, G:0.11, T:0.15
Consensus pattern (38 bp):
TGTGCCAAAACAACATACCAAAAAAGAATACCAAGTAA
Found at i:45135154 original size:12 final size:12
Alignment explanation
Indices: 45135137--45135163 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
45135127 AAATTATGAA
45135137 ATTATTAATATT
1 ATTATTAATATT
45135149 ATTATTAATATT
1 ATTATTAATATT
45135161 ATT
1 ATT
45135164 TAAAATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
ATTATTAATATT
Found at i:45135716 original size:13 final size:13
Alignment explanation
Indices: 45135698--45135755 Score: 53
Period size: 13 Copynumber: 4.2 Consensus size: 13
45135688 AAAGCAACCT
45135698 AAACCCCAAATCC
1 AAACCCCAAATCC
*
45135711 AAACCCCAAATCTT
1 AAACCCCAAATC-C
*
45135725 AAACCCAAAACTCC
1 AAACCCCAAA-TCC
* *
45135739 TAAACCCTAAACCC
1 -AAACCCCAAATCC
45135753 AAA
1 AAA
45135756 ACACTAACGC
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
13 15 0.41
14 11 0.30
15 11 0.30
ACGTcount: A:0.48, C:0.40, G:0.00, T:0.12
Consensus pattern (13 bp):
AAACCCCAAATCC
Found at i:45135730 original size:14 final size:13
Alignment explanation
Indices: 45135696--45135745 Score: 55
Period size: 13 Copynumber: 3.6 Consensus size: 13
45135686 CTAAAGCAAC
45135696 CTAAACCCCAAAT
1 CTAAACCCCAAAT
*
45135709 CCAAACCCCAAAT
1 CTAAACCCCAAAT
*
45135722 CTTAAACCCAAAACT
1 C-TAAACCCCAAA-T
45135737 CCTAAACCC
1 -CTAAACCC
45135746 TAAACCCAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
13 13 0.42
14 9 0.29
15 8 0.26
16 1 0.03
ACGTcount: A:0.44, C:0.42, G:0.00, T:0.14
Consensus pattern (13 bp):
CTAAACCCCAAAT
Found at i:45136880 original size:23 final size:23
Alignment explanation
Indices: 45136854--45136905 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
45136844 AGGGCTGGCT
45136854 TTGGATGCTATTCTTTATAGCTG
1 TTGGATGCTATTCTTTATAGCTG
45136877 TTGGATGCTATTCTTTATAGCTG
1 TTGGATGCTATTCTTTATAGCTG
45136900 TTGGAT
1 TTGGAT
45136906 TCAAAATGCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.17, C:0.12, G:0.23, T:0.48
Consensus pattern (23 bp):
TTGGATGCTATTCTTTATAGCTG
Found at i:45139385 original size:92 final size:92
Alignment explanation
Indices: 45139249--45139442 Score: 286
Period size: 92 Copynumber: 2.1 Consensus size: 92
45139239 TTGATTTTAG
* *
45139249 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTA-TATAATTA
1 TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTA-AATTA
*
45139313 TAT-TAAT-ATTAATTATTTTAAATTGTA
65 TATGTAATAATT-ATTATTTTAAATTATA
* *
45139340 TAAATTCATATAAGAAAATTTTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTA
1 TAAATTCATATAAGAAAA-TTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTA
45139405 TATGTAATAATTATTATTTTAAATTATA
65 TATGTAATAATTATTATTTTAAATTATA
*
45139433 CAAATTCATA
1 TAAATTCATA
45139443 AACTATAATC
Statistics
Matches: 93, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
91 17 0.18
92 43 0.46
93 30 0.32
94 3 0.03
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (92 bp):
TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
ATGTAATAATTATTATTTTAAATTATA
Found at i:45139500 original size:17 final size:17
Alignment explanation
Indices: 45139475--45139526 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
45139465 ATAATTTTAA
*
45139475 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
45139492 ATTTAATTAAATC-T-T
1 ATTTAATTAAATCATAT
*
45139507 A-TTAGTTATAATCATAT
1 ATTTAATTA-AATCATAT
45139524 ATT
1 ATT
45139527 ATGATTTGAG
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
14 6 0.21
15 6 0.21
16 2 0.07
17 14 0.48
18 1 0.03
ACGTcount: A:0.40, C:0.06, G:0.02, T:0.52
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:45139615 original size:16 final size:17
Alignment explanation
Indices: 45139577--45139616 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
45139567 AATTTTATTA
45139577 AATAA-TATATTTTAAT
1 AATAATTATATTTTAAT
*
45139593 TAT-ATTATA-TTTAAT
1 AATAATTATATTTTAAT
45139608 AATAATTAT
1 AATAATTAT
45139617 GTTATTTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 4
0.77 0.08 0.15
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
AATAATTATATTTTAAT
Found at i:45139721 original size:18 final size:17
Alignment explanation
Indices: 45139693--45139727 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
45139683 ATTATTAAGA
*
45139693 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
45139710 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
45139728 TTATAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:45139727 original size:16 final size:17
Alignment explanation
Indices: 45139693--45139734 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
45139683 ATTATTAAGA
45139693 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA-TATAT
45139710 ATTTTAATTAAA-ATAT
1 ATTTTAATTAAATATAT
45139726 ATTTATAAT
1 ATTT-TAAT
45139735 AATTATGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 8 0.35
17 9 0.39
18 6 0.26
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
ATTTTAATTAAATATAT
Found at i:45139836 original size:143 final size:146
Alignment explanation
Indices: 45139681--45139950 Score: 476
Period size: 143 Copynumber: 1.9 Consensus size: 146
45139671 ATAAGAATAT
*
45139681 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATT-TATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
45139745 AAATATGATTAAATTATTTATTATTGAT-AT-TAATCTTATTAAAATTTAAATAA-AATAATTTA
66 AAATATGATTAAATTATTTATT-TTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTA
45139807 CCAAAACAAATTTCTGC
130 CCAAAACAAATTTCTGC
45139824 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
45139889 AAATATGATTAAATTATTTATTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGATTAAATTATTTATTTTGATAAT--ATAATCTTATTAAAATTTAAATAACAATAA
45139951 CAATAATCAT
Statistics
Matches: 120, Mismatches: 1, Indels: 7
0.94 0.01 0.05
Matches are distributed among these distances:
143 53 0.44
144 39 0.32
147 23 0.19
148 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (146 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGATTAAATTATTTATTTTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTAC
CAAAACAAATTTCTGC
Found at i:45139864 original size:18 final size:17
Alignment explanation
Indices: 45139836--45139870 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
45139826 ATTATTAAGA
*
45139836 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
45139853 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
45139871 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:45140080 original size:44 final size:45
Alignment explanation
Indices: 45140031--45140125 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
45140021 TTACACCTCT
* *
45140031 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
45140075 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
45140120 ATTACA
1 ATTACA
45140126 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:45140125 original size:16 final size:16
Alignment explanation
Indices: 45140104--45140136 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
45140094 TTGATTTGCT
*
45140104 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
45140120 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
45140136 A
1 A
45140137 ATCCAATACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.36, G:0.00, T:0.33
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:45140146 original size:21 final size:21
Alignment explanation
Indices: 45140117--45140159 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
45140107 ACACCTCTAT
*
45140117 TCCATTACACCTCTAATCCAA
1 TCCAATACACCTCTAATCCAA
45140138 TCCAATACACCTCTAATCCAA
1 TCCAATACACCTCTAATCCAA
45140159 T
1 T
45140160 ACAGCGAACC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (21 bp):
TCCAATACACCTCTAATCCAA
Found at i:45141081 original size:114 final size:113
Alignment explanation
Indices: 45140466--45141133 Score: 712
Period size: 114 Copynumber: 5.9 Consensus size: 113
45140456 ACCTACATGT
* * * *
45140466 GTTTTTACATGAGCGCCACTAATTCTAATATACATCAAGACCAAACGCTGCGTTTTGGTTAAGAT
1 GTTTTTCCATAAGCGCCACTAATTCTAATATACCTCAAGACCAAACGATGCGTTTTGGTTAAGAT
* * * ** * *
45140531 ATTTTGCGGCGATTCTTACAAAGCGCCTTTAATACTCTGCTTTAGCGGC
66 ATTTTGCGGCGTTTC-TAAAAAACGCCGCTAATACTATGCTATAGCGGC
* * * * * * *
45140580 CTTTTTCCGTAACCGCCACTAATTTTTATATTCATCAAGACCAAACGATGCGTTTTGGTTAAGAT
1 GTTTTTCCATAAGCGCCACTAATTCTAATATACCTCAAGACCAAACGATGCGTTTTGGTTAAGAT
* * *
45140645 ATCTTGCGGCGTTTCATACAAAACGCCGCTAATACTATGCTATAGCGGT
66 ATTTTGCGGCGTTTC-TAAAAAACGCCGCTAATACTATGCTATAGCGGC
* * * *
45140694 GTTTTTCCACAAGCGCCACTAATTCTAATATACATTAAGACCAAACGCTGCGTTTTGGTTAAGAT
1 GTTTTTCCATAAGCGCCACTAATTCTAATATACCTCAAGACCAAACGATGCGTTTTGGTTAAGAT
* * * * * * *
45140759 ATTTTACGACGTTTCTCAAAAAGCGCCTCTAATACTCTCCTTTAGCGGC
66 ATTTTGCGGCGTTTCT-AAAAAACGCCGCTAATACTATGCTATAGCGGC
* * * * *
45140808 ATTTTTCCGTAACCGCCACTAATTCTTATATACCTCAAGACCAAACGATGCATTTTGGTTAAGAT
1 GTTTTTCCATAAGCGCCACTAATTCTAATATACCTCAAGACCAAACGATGCGTTTTGGTTAAGAT
** *
45140873 ATTTTGCGGCGTTTTCTGTAAAACGCCGCTAATACTGTGCTATAGCGGC
66 ATTTTGCGGCG-TTTCTAAAAAACGCCGCTAATACTATGCTATAGCGGC
* * **
45140922 GTTTTTACATAAGCGCCACTAATTCTAATATACCTCAAGACCAAACGCTGCGTTTTTTATTAAGA
1 GTTTTTCCATAAGCGCCACTAATTCTAATATACCTCAAGACCAAACGATGCG-TTTTGGTTAAGA
* * *
45140987 TATTTTGTGGCGTTTACTAAAAAACGCCGCTAATAATATACTATAGCGGC
65 TATTTTGCGGCGTTT-CTAAAAAACGCCGCTAATACTATGCTATAGCGGC
* * * ** * * * *
45141037 G-TTTTCCATAAACGCCACCAAATCTAATATACCTCGGGAACAAACAATGCGTTTTGGCTAACA-
1 GTTTTTCCATAAGCGCCACTAATTCTAATATACCTCAAGACCAAACGATGCGTTTTGGTTAAGAT
* *
45141100 ATTTTTGCGGCGCTTAC-AAATAAGCGCCGCTAAT
66 A-TTTTGCGGCG-TTTCTAAA-AAACGCCGCTAAT
45141134 TGTGCTATAT
Statistics
Matches: 461, Mismatches: 86, Indels: 15
0.82 0.15 0.03
Matches are distributed among these distances:
112 4 0.01
113 31 0.07
114 370 0.80
115 56 0.12
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (113 bp):
GTTTTTCCATAAGCGCCACTAATTCTAATATACCTCAAGACCAAACGATGCGTTTTGGTTAAGAT
ATTTTGCGGCGTTTCTAAAAAACGCCGCTAATACTATGCTATAGCGGC
Found at i:45141108 original size:228 final size:226
Alignment explanation
Indices: 45140466--45141111 Score: 837
Period size: 228 Copynumber: 2.8 Consensus size: 226
45140456 ACCTACATGT
*
45140466 GTTTTTACATGAGCGCCACTAATTCTAATATACATCAAGACCAAACGCTGCGTTTTGGTTAAGAT
1 GTTTTTACATAAGCGCCACTAATTCTAATATACATCAAGACCAAACGCTGCGTTTTGGTTAAGAT
* * * *
45140531 ATTTTGCGGCGATTCTTACAAAGCGCCTTTAATACTCTGCTTTAGCGGCCTTTTTCCGTAACCGC
66 ATTTTGCGGCGTTTC-TAAAAAGCGCCTCTAATACTCTACTTTAGCGG-CTTTTTCCGTAACCGC
* * * *
45140596 CACTAATTTTTATATTCATCAAGACCAAACGATGCGTTTTGGTTAAGATATCTTGCGGCGTTTCA
129 CACTAATTCTTATATACCTCAAGACCAAACGATGCGTTTTGGTTAAGATATTTTGCGGCGTTTCA
*
45140661 TACAAAACGCCGCTAATACTATGCTATAGCGGT
194 TACAAAACGCCGCTAATACTATGCTATAGCGGC
* * *
45140694 GTTTTTCCACAAGCGCCACTAATTCTAATATACATTAAGACCAAACGCTGCGTTTTGGTTAAGAT
1 GTTTTTACATAAGCGCCACTAATTCTAATATACATCAAGACCAAACGCTGCGTTTTGGTTAAGAT
* * *
45140759 ATTTTACGACGTTTCTCAAAAAGCGCCTCTAATACTCTCCTTTAGCGGCATTTTTCCGTAACCGC
66 ATTTTGCGGCGTTTCT-AAAAAGCGCCTCTAATACTCTACTTTAGCGGC-TTTTTCCGTAACCGC
*
45140824 CACTAATTCTTATATACCTCAAGACCAAACGATGCATTTTGGTTAAGATATTTTGCGGCGTTTTC
129 CACTAATTCTTATATACCTCAAGACCAAACGATGCGTTTTGGTTAAGATATTTTGCGGCG-TTTC
** *
45140889 -TGTAAAACGCCGCTAATACTGTGCTATAGCGGC
193 ATACAAAACGCCGCTAATACTATGCTATAGCGGC
* **
45140922 GTTTTTACATAAGCGCCACTAATTCTAATATACCTCAAGACCAAACGCTGCGTTTTTTATTAAGA
1 GTTTTTACATAAGCGCCACTAATTCTAATATACATCAAGACCAAACGCTGCG-TTTTGGTTAAGA
* * * * * * * * *
45140987 TATTTTGTGGCGTTTACTAAAAAACGCCGCTAATAATATACTATAGCGGCGTTTTCCATAAACGC
65 TATTTTGCGGCGTTT-CTAAAAAGCGCCTCTAATACTCTACTTTAGCGGCTTTTTCCGTAACCGC
* * * ** * * * *
45141052 CACCAAATCTAATATACCTCGGGAACAAACAATGCGTTTTGGCTAACA-ATTTTTGCGGCG
129 CACTAATTCTTATATACCTCAAGACCAAACGATGCGTTTTGGTTAAGATA-TTTTGCGGCG
45141112 CTTACAAATA
Statistics
Matches: 365, Mismatches: 47, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
227 3 0.01
228 308 0.84
229 52 0.14
230 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.33
Consensus pattern (226 bp):
GTTTTTACATAAGCGCCACTAATTCTAATATACATCAAGACCAAACGCTGCGTTTTGGTTAAGAT
ATTTTGCGGCGTTTCTAAAAAGCGCCTCTAATACTCTACTTTAGCGGCTTTTTCCGTAACCGCCA
CTAATTCTTATATACCTCAAGACCAAACGATGCGTTTTGGTTAAGATATTTTGCGGCGTTTCATA
CAAAACGCCGCTAATACTATGCTATAGCGGC
Found at i:45141127 original size:342 final size:342
Alignment explanation
Indices: 45140479--45141133 Score: 818
Period size: 342 Copynumber: 1.9 Consensus size: 342
45140469 TTTACATGAG
* *
45140479 CGCCACTAATTCTAATATACATCAAGACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGAT
1 CGCCACTAATTCTAATATACATCAAGACCAAACGATGCATTTTGGTTAAGATATTTTGCGGCGAT
** * * * * *
45140544 TCTTACAAAGCGCCTTTAATACTCTGCTTTAGCGGCCTTTTTCCGTAACCGCCACTAATTTTTAT
66 TCTTACAAAGCGCCGCTAATACTCTGCTATAGCGGCCTTTTTACATAACCGCCACTAATTCTAAT
* * *
45140609 ATTCATCAAGACCAAACGATGCGTTTTGGTTAAGATATCTTGCGGCGTTTCATACAAAACGCCGC
131 ATACATCAAGACCAAACGATGCGTTTTGATTAAGATATCTTGCGGCGTTTCATAAAAAACGCCGC
* * * * * * * *
45140674 TAATACTATGCTATAGCGGTGTTTTTCCACAAGCGCCACTAATTCTAATATACATTAAGACCAAA
196 TAATAATATACTATAGCGGCGTTTTTCCACAAACGCCACCAAATCTAATATACATCAAGAACAAA
** * * * * *
45140739 CGCTGCGTTTTGGTTAAGATATTTTACGACGTTTCTCAAAAAGCGCCTCTAATACTCTCCTTTAG
261 CAATGCGTTTTGGCTAAAATATTTTACGACGCTTCACAAAAAGCGCCGCTAATACTCTCCTTTAG
45140804 CGGCATTTTTCCGTAAC
326 CGGCATTTTTCCGTAAC
* * *
45140821 CGCCACTAATTCTTATATACCTCAAGACCAAACGATGCATTTTGGTTAAGATATTTTGCGGCGTT
1 CGCCACTAATTCTAATATACATCAAGACCAAACGATGCATTTTGGTTAAGATATTTTGCGGCG-A
* * *
45140886 TTCTGTA-AAA-CGCCGCTAATACTGTGCTATAGCGGCGTTTTTACATAAGCGCCACTAATTCTA
65 TTCT-TACAAAGCGCCGCTAATACTCTGCTATAGCGGCCTTTTTACATAACCGCCACTAATTCTA
* * * * *
45140949 ATATACCTCAAGACCAAACGCTGCGTTTTTTATTAAGATATTTTGTGGCGTTT-ACTAAAAAACG
129 ATATACATCAAGACCAAACGATGCG-TTTTGATTAAGATATCTTGCGGCGTTTCA-TAAAAAACG
* * **
45141013 CCGCTAATAATATACTATAGCGGCG-TTTTCCATAAACGCCACCAAATCTAATATACCTCGGGAA
192 CCGCTAATAATATACTATAGCGGCGTTTTTCCACAAACGCCACCAAATCTAATATACATCAAGAA
* *
45141077 CAAACAATGCGTTTTGGCTAACAAT-TTTTGCGGCGCTT-ACAAATAAGCGCCGCTAAT
257 CAAACAATGCGTTTTGGCTAA-AATATTTTACGACGCTTCACAAA-AAGCGCCGCTAAT
45141134 TGTGCTATAT
Statistics
Matches: 263, Mismatches: 44, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
341 4 0.02
342 195 0.74
343 62 0.24
344 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (342 bp):
CGCCACTAATTCTAATATACATCAAGACCAAACGATGCATTTTGGTTAAGATATTTTGCGGCGAT
TCTTACAAAGCGCCGCTAATACTCTGCTATAGCGGCCTTTTTACATAACCGCCACTAATTCTAAT
ATACATCAAGACCAAACGATGCGTTTTGATTAAGATATCTTGCGGCGTTTCATAAAAAACGCCGC
TAATAATATACTATAGCGGCGTTTTTCCACAAACGCCACCAAATCTAATATACATCAAGAACAAA
CAATGCGTTTTGGCTAAAATATTTTACGACGCTTCACAAAAAGCGCCGCTAATACTCTCCTTTAG
CGGCATTTTTCCGTAAC
Found at i:45149996 original size:38 final size:38
Alignment explanation
Indices: 45149937--45150042 Score: 105
Period size: 37 Copynumber: 2.8 Consensus size: 38
45149927 CATTTTTAAG
*
45149937 AATAT-AAAGAATATATATAAGTATGTATATG-ATGTA-A
1 AATATGAAA-AATATATATAAGTATGTATAAGAAT-TAGA
* *
45149974 AATATGCATAAATATATGTAAGTA--TATAAGAATTATGA
1 AATATG-AAAAATATATATAAGTATGTATAAGAATTA-GA
*
45150012 AATATGAAAAATATATTTAAGTATGTATAAG
1 AATATGAAAAATATATATAAGTATGTATAAG
45150043 TACGTATATA
Statistics
Matches: 57, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
36 7 0.12
37 22 0.39
38 20 0.35
39 8 0.14
ACGTcount: A:0.51, C:0.01, G:0.13, T:0.35
Consensus pattern (38 bp):
AATATGAAAAATATATATAAGTATGTATAAGAATTAGA
Found at i:45150435 original size:19 final size:17
Alignment explanation
Indices: 45150411--45150459 Score: 53
Period size: 20 Copynumber: 2.6 Consensus size: 17
45150401 TAATATTAGA
45150411 AAAATATATATAATAGTGT
1 AAAATATATATAATA-T-T
45150430 AAAATATAACTAATAATATT
1 AAAATAT-A-T-ATAATATT
45150450 AAAATATATA
1 AAAATATATA
45150460 CAATGATAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 1 0.04
18 1 0.04
19 8 0.30
20 9 0.33
21 2 0.07
22 6 0.22
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (17 bp):
AAAATATATATAATATT
Found at i:45150740 original size:3 final size:3
Alignment explanation
Indices: 45150725--45150763 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
45150715 AAGCATAAAC
* *
45150725 TAA TAA AAA TAA TAA TAA TAA TAA TAA TAA TAA TGA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
45150764 CATTGGAATA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:45150895 original size:3 final size:3
Alignment explanation
Indices: 45150864--45150931 Score: 57
Period size: 3 Copynumber: 22.3 Consensus size: 3
45150854 ATACACGTAC
* * * *
45150864 ATA ATA AAA ATA TATA CTA ATA CATA ATA ATA ATA CTA ATA CTA ATA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
* *
45150911 ATA CTA ATA AT- ATA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA A
45150932 CAAGGATATT
Statistics
Matches: 50, Mismatches: 12, Indels: 6
0.74 0.18 0.09
Matches are distributed among these distances:
2 2 0.04
3 42 0.84
4 6 0.12
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:45151664 original size:19 final size:19
Alignment explanation
Indices: 45151640--45151681 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
45151630 AAATACAACC
* *
45151640 TTTTGTTATTTCTTTTTGT
1 TTTTGTTATATATTTTTGT
*
45151659 TTTTGTTGTATATTTTTGT
1 TTTTGTTATATATTTTTGT
45151678 TTTT
1 TTTT
45151682 TCTTTGCATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.07, C:0.02, G:0.12, T:0.79
Consensus pattern (19 bp):
TTTTGTTATATATTTTTGT
Found at i:45152294 original size:22 final size:21
Alignment explanation
Indices: 45152257--45152298 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
45152247 TATGATTTTA
45152257 ATAAATTTAAAATTAAATTAG
1 ATAAATTTAAAATTAAATTAG
*
45152278 ATAAATTATTAAATTAAATTA
1 ATAAATT-TAAAATTAAATTA
45152299 AATATTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (21 bp):
ATAAATTTAAAATTAAATTAG
Found at i:45152304 original size:17 final size:17
Alignment explanation
Indices: 45152258--45152304 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
45152248 ATGATTTTAA
45152258 TAAATTTAAA-ATTAAAT
1 TAAA-TTAAATATTAAAT
*
45152275 TAGA-TAAATTATTAAAT
1 TAAATTAAA-TATTAAAT
45152292 TAAATTAAATATT
1 TAAATTAAATATT
45152305 TTAAATAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
15 4 0.16
17 17 0.68
18 4 0.16
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (17 bp):
TAAATTAAATATTAAAT
Found at i:45162106 original size:3 final size:3
Alignment explanation
Indices: 45162050--45162089 Score: 62
Period size: 3 Copynumber: 13.3 Consensus size: 3
45162040 AAACTGATAA
* *
45162050 ATT ATT ATT ATT ATC ATT ATT ATT ATT GTT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
45162090 GTTTTTGTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:45164636 original size:14 final size:15
Alignment explanation
Indices: 45164617--45164645 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
45164607 AGATATAGTA
45164617 AAATA-TTAAAAAAT
1 AAATATTTAAAAAAT
45164631 AAATATTTAAAAAAT
1 AAATATTTAAAAAAT
45164646 GTCACATGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATATTTAAAAAAT
Found at i:45167042 original size:18 final size:18
Alignment explanation
Indices: 45167009--45167044 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
45166999 TTCATAATTG
**
45167009 AATAACTCAATTTTTTCT
1 AATAACTCAAGCTTTTCT
45167027 AATAACTCAAGCTTTTCT
1 AATAACTCAAGCTTTTCT
45167045 TGGAAAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.19, G:0.03, T:0.44
Consensus pattern (18 bp):
AATAACTCAAGCTTTTCT
Found at i:45167087 original size:17 final size:16
Alignment explanation
Indices: 45167067--45167100 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
45167057 AAAATTAATT
*
45167067 TTAAAAACTAAAGAAAA
1 TTAAAAAATAAA-AAAA
45167084 TTAAAAAATAAAAAAA
1 TTAAAAAATAAAAAAA
45167100 T
1 T
45167101 GTTTGGTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (16 bp):
TTAAAAAATAAAAAAA
Found at i:45184022 original size:9 final size:9
Alignment explanation
Indices: 45183959--45184024 Score: 50
Period size: 9 Copynumber: 7.4 Consensus size: 9
45183949 TTTCGGTTAA
45183959 ATTAATTATT
1 ATTAA-TATT
*
45183969 -TTAACATT
1 ATTAATATT
45183977 ATTAATATT
1 ATTAATATT
45183986 ATT-ATATT
1 ATTAATATT
* *
45183994 GCATCATTATT
1 --ATTAATATT
45184005 ATT--TATT
1 ATTAATATT
45184012 ATTAATATT
1 ATTAATATT
45184021 ATTA
1 ATTA
45184025 TCCTTATCTC
Statistics
Matches: 45, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
7 7 0.16
8 8 0.18
9 24 0.53
10 2 0.04
11 4 0.09
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.56
Consensus pattern (9 bp):
ATTAATATT
Found at i:45184269 original size:47 final size:48
Alignment explanation
Indices: 45184216--45184318 Score: 113
Period size: 49 Copynumber: 2.2 Consensus size: 48
45184206 GATATACAAG
* * *
45184216 TACATACTTATATATATTT-TCCATATTTCGTAATTTTAAAATATATA
1 TACATACATATATATATTTATACATATTTCATAATTTTAAAATATATA
* * * *
45184263 TACATACATATGTTTCTTTCATATATATTTCATAATTTTAAAATATATA
1 TACATACATATATATATTT-ATACATATTTCATAATTTTAAAATATATA
45184312 -A-ATACAT
1 TACATACAT
45184319 GCATACATTT
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
47 21 0.45
48 1 0.02
49 25 0.53
ACGTcount: A:0.40, C:0.11, G:0.02, T:0.48
Consensus pattern (48 bp):
TACATACATATATATATTTATACATATTTCATAATTTTAAAATATATA
Found at i:45185756 original size:3 final size:3
Alignment explanation
Indices: 45185748--45185785 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
45185738 CTTTCTAACT
45185748 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
45185786 CCCTAACATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:45186142 original size:24 final size:23
Alignment explanation
Indices: 45186096--45186142 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
45186086 TTAATTATGG
45186096 AATTAATTAAATTTACTTTAAATT
1 AATTAATTAAATTTA-TTTAAATT
45186120 AATTAATTAATATTT-TTTGAAAT
1 AATTAATTAA-ATTTATTT-AAAT
45186143 GGAAAAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 14 0.67
25 4 0.19
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (23 bp):
AATTAATTAAATTTATTTAAATT
Found at i:45190610 original size:29 final size:29
Alignment explanation
Indices: 45190578--45190633 Score: 98
Period size: 28 Copynumber: 2.0 Consensus size: 29
45190568 TGGTTAAATG
45190578 TATA-ATTTTATACATG-AATTTTGATTT
1 TATATATTTTATACATGAAATTTTGATTT
45190605 TATATATTTTATACATGAAATTTTGATTT
1 TATATATTTTATACATGAAATTTTGATTT
45190634 AATCCAATTC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 4 0.15
28 12 0.44
29 11 0.41
ACGTcount: A:0.34, C:0.04, G:0.07, T:0.55
Consensus pattern (29 bp):
TATATATTTTATACATGAAATTTTGATTT
Found at i:45194757 original size:14 final size:14
Alignment explanation
Indices: 45194738--45194767 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
45194728 TTGTTACAGG
45194738 TTTTCTTTCTTTTC
1 TTTTCTTTCTTTTC
45194752 TTTTCTTTCTTTTC
1 TTTTCTTTCTTTTC
45194766 TT
1 TT
45194768 GTAGATTGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTTCTTTCTTTTC
Found at i:45202422 original size:3 final size:3
Alignment explanation
Indices: 45202409--45202476 Score: 70
Period size: 3 Copynumber: 23.0 Consensus size: 3
45202399 TTATTTACTC
* * *
45202409 ATT ATT A-T ATT ATT -GT ATT A-T ACT ATT AGTT TTGT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT AT-T ATT ATT ATT
45202453 ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT
45202477 TACTCATTTA
Statistics
Matches: 55, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
2 5 0.09
3 46 0.84
4 4 0.07
ACGTcount: A:0.31, C:0.01, G:0.04, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:45214343 original size:6 final size:6
Alignment explanation
Indices: 45214332--45214356 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
45214322 TTCTCCAATT
45214332 GTTATG GTTATG GTTATG GTTATG G
1 GTTATG GTTATG GTTATG GTTATG G
45214357 AATTTGGGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.36, T:0.48
Consensus pattern (6 bp):
GTTATG
Found at i:45216289 original size:18 final size:18
Alignment explanation
Indices: 45216266--45216311 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
45216256 AGAAGTTTTG
45216266 ATAATTATACATTTAA-AA
1 ATAATTATA-ATTTAATAA
45216284 ATAATTATAATTTAATAA
1 ATAATTATAATTTAATAA
*
45216302 AAAATTATAA
1 ATAATTATAA
45216312 GTACACATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 6 0.23
18 20 0.77
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (18 bp):
ATAATTATAATTTAATAA
Found at i:45216293 original size:24 final size:24
Alignment explanation
Indices: 45216266--45216338 Score: 86
Period size: 24 Copynumber: 3.3 Consensus size: 24
45216256 AGAAGTTTTG
45216266 ATAATTATACATTTAAAAATAATT
1 ATAATTATACATTTAAAAATAATT
45216290 ATAATT-TA-A--T-AAAA-AATT
1 ATAATTATACATTTAAAAATAATT
* *
45216308 ATAAGTACACATTTAAAAATAATT
1 ATAATTATACATTTAAAAATAATT
45216332 ATAATTA
1 ATAATTA
45216339 ATAATTATTG
Statistics
Matches: 40, Mismatches: 3, Indels: 12
0.73 0.05 0.22
Matches are distributed among these distances:
18 9 0.22
19 5 0.12
20 2 0.05
22 2 0.05
23 6 0.15
24 16 0.40
ACGTcount: A:0.56, C:0.04, G:0.01, T:0.38
Consensus pattern (24 bp):
ATAATTATACATTTAAAAATAATT
Found at i:45218803 original size:28 final size:28
Alignment explanation
Indices: 45218740--45218796 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
45218730 GGGTTTGGGT
* *
45218740 TTAGGATTTAAGGTTCAAGGTTCGAAGT
1 TTAGGATTTAAGATTCAAGGTTCGAAGG
45218768 TTAGGATTTAAGATTCAAGGTTC-AAGG
1 TTAGGATTTAAGATTCAAGGTTCGAAGG
45218795 TT
1 TT
45218797 CGTGATTCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 5 0.19
28 22 0.81
ACGTcount: A:0.30, C:0.07, G:0.26, T:0.37
Consensus pattern (28 bp):
TTAGGATTTAAGATTCAAGGTTCGAAGG
Found at i:45222169 original size:31 final size:30
Alignment explanation
Indices: 45222134--45222222 Score: 107
Period size: 30 Copynumber: 3.1 Consensus size: 30
45222124 ATTTCTTATG
45222134 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TCGATACCCATATCTTTGACTTT
*
45222165 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTCGATACCCATATCTTTGACTTT
* *
45222195 ---AT-TT-GATACTCATATCTTTAACTTT
1 CCAATATTCGATACCCATATCTTTGACTTT
45222220 CCA
1 CCA
45222223 TAAATATGGA
Statistics
Matches: 52, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
25 19 0.37
26 2 0.04
27 2 0.04
30 22 0.42
31 7 0.13
ACGTcount: A:0.27, C:0.25, G:0.06, T:0.43
Consensus pattern (30 bp):
CCAATATTCGATACCCATATCTTTGACTTT
Found at i:45222180 original size:30 final size:30
Alignment explanation
Indices: 45222134--45222222 Score: 107
Period size: 25 Copynumber: 3.1 Consensus size: 30
45222124 ATTTCTTATG
*
45222134 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
45222165 CCAATATTTGATACCCATATCTTTGAC-TT
1 CCAATATTTGATACCCATATCTTTGACTTT
* *
45222194 ----TATTTGATACTCATATCTTTAACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
45222220 CCA
1 CCA
45222223 TAAATATGGA
Statistics
Matches: 51, Mismatches: 3, Indels: 10
0.80 0.05 0.16
Matches are distributed among these distances:
25 21 0.41
26 2 0.04
29 2 0.04
30 19 0.37
31 7 0.14
ACGTcount: A:0.27, C:0.25, G:0.06, T:0.43
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:45222189 original size:15 final size:15
Alignment explanation
Indices: 45222144--45222190 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
45222134 CCAATATCTC
45222144 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
45222159 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
45222174 GATACCCATATCTTT
1 GATACCCATATCTTT
45222189 GA
1 GA
45222191 CTTTATTTGA
Statistics
Matches: 24, Mismatches: 6, Indels: 4
0.71 0.18 0.12
Matches are distributed among these distances:
14 4 0.17
15 16 0.67
16 4 0.17
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:45226833 original size:31 final size:30
Alignment explanation
Indices: 45226798--45226886 Score: 107
Period size: 30 Copynumber: 3.1 Consensus size: 30
45226788 ATTTCTTATG
45226798 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TCGATACCCATATCTTTGACTTT
*
45226829 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTCGATACCCATATCTTTGACTTT
* *
45226859 ---AT-TT-GATACTCATATATTTGACTTT
1 CCAATATTCGATACCCATATCTTTGACTTT
45226884 CCA
1 CCA
45226887 TAAATATGGA
Statistics
Matches: 52, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
25 19 0.37
26 2 0.04
27 2 0.04
30 22 0.42
31 7 0.13
ACGTcount: A:0.27, C:0.24, G:0.07, T:0.43
Consensus pattern (30 bp):
CCAATATTCGATACCCATATCTTTGACTTT
Found at i:45226844 original size:30 final size:30
Alignment explanation
Indices: 45226798--45226886 Score: 107
Period size: 25 Copynumber: 3.1 Consensus size: 30
45226788 ATTTCTTATG
*
45226798 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
45226829 CCAATATTTGATACCCATATCTTTGAC-TT
1 CCAATATTTGATACCCATATCTTTGACTTT
* *
45226858 ----TATTTGATACTCATATATTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
45226884 CCA
1 CCA
45226887 TAAATATGGA
Statistics
Matches: 51, Mismatches: 3, Indels: 10
0.80 0.05 0.16
Matches are distributed among these distances:
25 21 0.41
26 2 0.04
29 2 0.04
30 19 0.37
31 7 0.14
ACGTcount: A:0.27, C:0.24, G:0.07, T:0.43
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:45226853 original size:15 final size:15
Alignment explanation
Indices: 45226808--45226854 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
45226798 CCAATATCTC
45226808 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
45226823 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
45226838 GATACCCATATCTTT
1 GATACCCATATCTTT
45226853 GA
1 GA
45226855 CTTTATTTGA
Statistics
Matches: 24, Mismatches: 6, Indels: 4
0.71 0.18 0.12
Matches are distributed among these distances:
14 4 0.17
15 16 0.67
16 4 0.17
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:45229761 original size:11 final size:11
Alignment explanation
Indices: 45229745--45229770 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
45229735 TCAAGTGTTT
45229745 GAGTAAAACTA
1 GAGTAAAACTA
45229756 GAGTAAAACTA
1 GAGTAAAACTA
45229767 GAGT
1 GAGT
45229771 CCAATGGAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.50, C:0.08, G:0.23, T:0.19
Consensus pattern (11 bp):
GAGTAAAACTA
Found at i:45232772 original size:17 final size:18
Alignment explanation
Indices: 45232750--45232785 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
45232740 TAAAATCCCT
45232750 AAACCCT-ACTTAATTAA
1 AAACCCTAACTTAATTAA
*
45232767 AAACCCTAATTTAATTAA
1 AAACCCTAACTTAATTAA
45232785 A
1 A
45232786 TTAAAAACCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.50, C:0.19, G:0.00, T:0.31
Consensus pattern (18 bp):
AAACCCTAACTTAATTAA
Found at i:45232815 original size:23 final size:23
Alignment explanation
Indices: 45232738--45232838 Score: 114
Period size: 24 Copynumber: 4.3 Consensus size: 23
45232728 ACATTATTTG
*
45232738 ATTAAAATCCCTAAACCCTACTTA
1 ATTAAAAACCCT-AACCCTACTTA
** *
45232762 ATTAAAAACCCTAA-TTTAATTAA
1 ATTAAAAACCCTAACCCTACTT-A
45232785 ATTAAAAACCCTAAACCCTACTTA
1 ATTAAAAACCCT-AACCCTACTTA
*
45232809 ATTAAAAACCCTAACCCTAACCTA
1 ATTAAAAACCCTAACCCT-ACTTA
45232833 ATTAAA
1 ATTAAA
45232839 TTAAATTAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
22 4 0.06
23 21 0.32
24 36 0.55
25 4 0.06
ACGTcount: A:0.48, C:0.25, G:0.00, T:0.28
Consensus pattern (23 bp):
ATTAAAAACCCTAACCCTACTTA
Found at i:45232852 original size:28 final size:27
Alignment explanation
Indices: 45232761--45233637 Score: 627
Period size: 23 Copynumber: 33.1 Consensus size: 27
45232751 AACCCTACTT
45232761 AATTAAAAACCCTAA--T--TTAATTA
1 AATTAAAAACCCTAACCTAATTAATTA
*
45232784 AATTAAAAACCCTAAACCCTACTTAATTA
1 AATTAAAAACCCT-AA-CCTAATTAATTA
*
45232813 AA--AACCCTAACCCTAACCTAATTAAATTA
1 AATTAA---AAACCCTAACCTAATT-AATTA
* *
45232842 AATTAAAAACCCTAACCTAACCTAATTT
1 AATTAAAAACCCTAACCTAA-TTAATTA
*
45232870 AATTAAAAACCCTAACCCTAACCTAACCTAATTG
1 AATTAAAAACCCTAA-CCTAA--T----TAATTA
45232904 AATTAAAAACCCTAACCTAA-T--TT-
1 AATTAAAAACCCTAACCTAATTAATTA
*
45232927 AATTAAAAACCCTAACC----TACTTA
1 AATTAAAAACCCTAACCTAATTAATTA
45232950 AATTAAAAACCCTAACCTAA-T--TT-
1 AATTAAAAACCCTAACCTAATTAATTA
*
45232973 AATTAAAAACCCTAACC----TACTTA
1 AATTAAAAACCCTAACCTAATTAATTA
*
45232996 AATTAAAAACCCTAACCTTATTTAATTA
1 AATTAAAAACCCTAACC-TAATTAATTA
*
45233024 AATTAAAAACCCTAACC----TACTTA
1 AATTAAAAACCCTAACCTAATTAATTA
*
45233047 AATTAAAAACCCTAACCCCTACTTAATTA
1 AATTAAAAACCCTAA--CCTAATTAATTA
*
45233076 AATTAAAAACCCTAAACCCTACTTAATTA
1 AATTAAAAACCCT-AA-CCTAATTAATTA
*
45233105 AA--AACCCTAACCCTAACCTAATTTAATTA
1 AATTAA---AAACCCTAACCTAA-TTAATTA
* *
45233134 AATTAAAAACCCTAACCTAACCTAATTT
1 AATTAAAAACCCTAACCTAA-TTAATTA
* *
45233162 AATTAAAAACTCTAACC----TACTTA
1 AATTAAAAACCCTAACCTAATTAATTA
45233185 AATTAAAAACCCTAACCTAA-T--TT-
1 AATTAAAAACCCTAACCTAATTAATTA
*
45233208 AATTAAAAACCCTAACC----TACTTA
1 AATTAAAAACCCTAACCTAATTAATTA
*
45233231 AATTAAAAACCCTAACCTTATTTAATTA
1 AATTAAAAACCCTAACC-TAATTAATTA
*
45233259 AATTAAAAACCCTAACC----TACTTA
1 AATTAAAAACCCTAACCTAATTAATTA
*
45233282 AATTAAAAACCCTAACCCCTACTTAATTA
1 AATTAAAAACCCTAA--CCTAATTAATTA
*
45233311 AATTAAAAACCCTAAACCCTACTTAATTA
1 AATTAAAAACCCT-AA-CCTAATTAATTA
*
45233340 AA--AACCCTAACCCTAACCTAATTTAATTA
1 AATTAA---AAACCCTAACCTAA-TTAATTA
* *
45233369 AATTAAAAACCCTAACCTAACCTAATTT
1 AATTAAAAACCCTAACCTAA-TTAATTA
45233397 AATTAAAAACCCTAACCTAA-T--TT-
1 AATTAAAAACCCTAACCTAATTAATTA
* *
45233420 AATTAAAAACTCTAACC----TACTTA
1 AATTAAAAACCCTAACCTAATTAATTA
*
45233443 AATTAAAAACCCTAACCTAACCTAATTA
1 AATTAAAAACCCTAACCTAA-TTAATTA
*
45233471 AATTAAAAACCCTAACCCTAACCTAACCTAATTT
1 AATTAAAAACCCTAA-CCTAA--T----TAATTA
45233505 AATTAAAAACCCTAACCTAA-T--TT-
1 AATTAAAAACCCTAACCTAATTAATTA
*
45233528 AATTAAAAACCCTAACCTTATTTAATTA
1 AATTAAAAACCCTAACC-TAATTAATTA
45233556 AATTAAAAACCCTAAACCTAA-T--TT-
1 AATTAAAAACCCT-AACCTAATTAATTA
*
45233580 AATTAAAAACCCTAACCTAACCTAATTA
1 AATTAAAAACCCTAACCTAA-TTAATTA
*
45233608 AATTAAAAACCCTAACCCTATTTAATTA
1 AATTAAAAACCCTAA-CCTAATTAATTA
45233636 AA
1 AA
45233638 AACCCTAATT
Statistics
Matches: 720, Mismatches: 38, Indels: 187
0.76 0.04 0.20
Matches are distributed among these distances:
20 4 0.01
22 8 0.01
23 231 0.32
24 27 0.04
25 8 0.01
26 5 0.01
27 12 0.02
28 220 0.31
29 125 0.17
30 24 0.03
31 6 0.01
33 10 0.01
34 40 0.06
ACGTcount: A:0.47, C:0.24, G:0.00, T:0.29
Consensus pattern (27 bp):
AATTAAAAACCCTAACCTAATTAATTA
Found at i:45233157 original size:33 final size:34
Alignment explanation
Indices: 45233100--45233168 Score: 131
Period size: 33 Copynumber: 2.1 Consensus size: 34
45233090 AACCCTACTT
45233100 AATTAAAAACCCTAACCCTAACCTAATTTAATTA
1 AATTAAAAACCCTAACCCTAACCTAATTTAATTA
45233134 AATTAAAAACCCTAA-CCTAACCTAATTTAATTA
1 AATTAAAAACCCTAACCCTAACCTAATTTAATTA
45233167 AA
1 AA
45233169 AACTCTAACC
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 20 0.57
34 15 0.43
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.29
Consensus pattern (34 bp):
AATTAAAAACCCTAACCCTAACCTAATTTAATTA
Found at i:45233179 original size:235 final size:236
Alignment explanation
Indices: 45232733--45233645 Score: 1232
Period size: 235 Copynumber: 3.9 Consensus size: 236
45232723 TTTTGACATT
* *
45232733 ATTTGATTAAAATCCCTAAACCCTACTT-AATTAAAAACCCT-A----ATTTAATTAAATTAAAA
1 ATTTAATTAAAAACCCT-AA-CCTACTTAAATTAAAAACCCTAACCTTATTTAATTAAATTAAAA
*
45232792 ACCCTAAACCCTACTT-AATTAAAAACCCTAACCCTAACCTAATTAAATTAAATTAAAAACCCTA
64 ACCCT-AA-CCTACTTAAATTAAAAACCCTAA-CC---CCTACTT-AATTAAATTAAAAACCCTA
* * ** *
45232856 ACCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAACCTAATTGAATTAAAAA--C---CC
122 A---ACCCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAATTAAAAACCCTAACC
45232916 TAACCTAATTTAATTAAAAACCCTAACCTACTTAAATTAAAAACCCTAACCTA
184 TAACCTAATTTAATTAAAAACCCTAACCTACTTAAATTAAAAACCCTAACCTA
45232969 ATTTAATTAAAAACCCTAACCTACTTAAATTAAAAACCCTAACCTTATTTAATTAAATTAAAAAC
1 ATTTAATTAAAAACCCTAACCTACTTAAATTAAAAACCCTAACCTTATTTAATTAAATTAAAAAC
45233034 CCTAACCTACTTAAATTAAAAACCCTAACCCCTACTTAATTAAATTAAAAACCCTAAACCCT-AC
66 CCTAACCTACTTAAATTAAAAACCCTAACCCCTACTTAATTAAATTAAAAACCCTAAACCCTAAC
45233098 TTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAATTAAAAACCCTAACCTAACCTAATTTA
131 TTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAATTAAAAACCCTAACCTAACCTAATTTA
*
45233163 ATTAAAAACTCTAACCTACTTAAATTAAAAACCCTAACCTA
196 ATTAAAAACCCTAACCTACTTAAATTAAAAACCCTAACCTA
45233204 ATTTAATTAAAAACCCTAACCTACTTAAATTAAAAACCCTAACCTTATTTAATTAAATTAAAAAC
1 ATTTAATTAAAAACCCTAACCTACTTAAATTAAAAACCCTAACCTTATTTAATTAAATTAAAAAC
45233269 CCTAACCTACTTAAATTAAAAACCCTAACCCCTACTTAATTAAATTAAAAACCCTAAACCCT-AC
66 CCTAACCTACTTAAATTAAAAACCCTAACCCCTACTTAATTAAATTAAAAACCCTAAACCCTAAC
45233333 TTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAATTAAAAACCCTAACCTAACCTAATTTA
131 TTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAATTAAAAACCCTAACCTAACCTAATTTA
* * *
45233398 ATTAAAAACCCTAACCTAATTTAATTAAAAACTCTAACCTA
196 ATTAAAAACCCTAACCTACTTAAATTAAAAACCCTAACCTA
* * **
45233439 CTTAAATTAAAAACCCTAACCTAACCTAATTAAATTAAAAACCCTAACCCTAACCTAACCTAATT
1 ATTTAATTAAAAACCCTAACCT-A-C---TTAAATTAAAAACCCTAA-CCT----T-ATTTAATT
* * * * *
45233504 TAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAA-CCTTATTTAATTAAATTAAAAACCC
55 AAATTAAAAACCCTAACCTACTTAAATTAAAAACCCTAACCCCTACTTAATTAAATTAAAAACCC
*
45233568 TAAA-CCTAATTTAATTAAAAACCCTAA-CCTAACC-----TAATTAAATTAAAAACCCTAA-C-
120 TAAACCCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAATTAAAAACCCTAACCT
45233624 --CCT-ATTTAATTAAAAACCCTAA
185 AACCTAATTTAATTAAAAACCCTAA
45233646 TTAAATTGTA
Statistics
Matches: 630, Mismatches: 23, Indels: 50
0.90 0.03 0.07
Matches are distributed among these distances:
230 43 0.07
231 4 0.01
232 1 0.00
234 46 0.07
235 329 0.52
236 17 0.03
237 1 0.00
238 10 0.02
239 38 0.06
240 40 0.06
241 3 0.00
244 10 0.02
245 46 0.07
246 42 0.07
ACGTcount: A:0.47, C:0.24, G:0.00, T:0.29
Consensus pattern (236 bp):
ATTTAATTAAAAACCCTAACCTACTTAAATTAAAAACCCTAACCTTATTTAATTAAATTAAAAAC
CCTAACCTACTTAAATTAAAAACCCTAACCCCTACTTAATTAAATTAAAAACCCTAAACCCTAAC
TTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAATTAAAAACCCTAACCTAACCTAATTTA
ATTAAAAACCCTAACCTACTTAAATTAAAAACCCTAACCTA
Found at i:45233392 original size:33 final size:34
Alignment explanation
Indices: 45233335--45233521 Score: 133
Period size: 34 Copynumber: 5.5 Consensus size: 34
45233325 AACCCTACTT
45233335 AATTAAAAACCCTAACCCTAACCTAATTTAATTA
1 AATTAAAAACCCTAACCCTAACCTAATTTAATTA
45233369 AATTAAAAACCCTAA-CCTAACCTAA--T--TT-
1 AATTAAAAACCCTAACCCTAACCTAATTTAATTA
** *
45233397 AATTAAAAACCCTAA-CCTAATTTAATTAAAAACTCTA
1 AATTAAAAACCCTAACCCTAACCTAATT--TAA-T-TA
* **
45233434 ACCTACTTAAATTAA---AAACCCTAACCTAACCTAATTA
1 A---A-TTAAA--AACCCTAACCCTAACCTAATTTAATTA
** *
45233471 AATTAAAAACCCTAACCCTAACCTAACCTAATTT
1 AATTAAAAACCCTAACCCTAACCTAATTTAATTA
45233505 AATTAAAAACCCTAACC
1 AATTAAAAACCCTAACC
45233522 TAATTTAATT
Statistics
Matches: 123, Mismatches: 11, Indels: 38
0.72 0.06 0.22
Matches are distributed among these distances:
28 23 0.19
29 2 0.02
31 3 0.02
33 15 0.12
34 53 0.43
35 1 0.01
36 1 0.01
37 4 0.03
38 1 0.01
39 2 0.02
40 3 0.02
41 13 0.11
43 2 0.02
ACGTcount: A:0.48, C:0.25, G:0.00, T:0.27
Consensus pattern (34 bp):
AATTAAAAACCCTAACCCTAACCTAATTTAATTA
Found at i:45236982 original size:83 final size:84
Alignment explanation
Indices: 45236783--45236985 Score: 372
Period size: 83 Copynumber: 2.4 Consensus size: 84
45236773 CAAACTTGCT
45236783 ACTGTAGCGAAATCGCGTCCACGAGGGCGCGATTTGACACTATTTGCTCAAAAACGTCAAAAAAA
1 ACTGTAGCGAAATCGCGTCCACGAGGGCGCGATTTGACACTATTTGCTCAAAAACGTC-AAAAAA
45236848 AATTATTTCCTACATGACCA
65 AATTATTTCCTACATGACCA
**
45236868 ACTGTAGCGAAATCGCGTCCACGAGGGCGCGATTTGACACTATTTGCTCGGAAACGTC-AAAAAA
1 ACTGTAGCGAAATCGCGTCCACGAGGGCGCGATTTGACACTATTTGCTCAAAAACGTCAAAAAAA
45236932 ATTATTTCCTACATGACCA
66 ATTATTTCCTACATGACCA
45236951 ACTGTAGCGAAATCGCGTCCACGAGGGCGCGATTT
1 ACTGTAGCGAAATCGCGTCCACGAGGGCGCGATTT
45236986 CACAATTTCT
Statistics
Matches: 116, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
83 60 0.52
85 56 0.48
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23
Consensus pattern (84 bp):
ACTGTAGCGAAATCGCGTCCACGAGGGCGCGATTTGACACTATTTGCTCAAAAACGTCAAAAAAA
ATTATTTCCTACATGACCA
Found at i:45237116 original size:125 final size:124
Alignment explanation
Indices: 45236919--45237150 Score: 351
Period size: 125 Copynumber: 1.9 Consensus size: 124
45236909 ATTTGCTCGG
* *
45236919 AAACGTCAAAAAAATTATTTCCTACATGACCAACTGTAGCGAAATCGCGTCCACGAGGGCGCGAT
1 AAACGTCAAAAAAATTATTTCCTACATGACCAACTGTAGCGAAATCGCGTCCACGAGGCCACGAT
* * **
45236984 TTCACAATTTCTTCTCATATAGCATCCTGGTATCAGCGATTTTATACTATTTCCTCAAA
66 TTCACAATTTCTTCTCAAATAGCATCCTAGTAGAAGCGATTTTATACTATTTCCTCAAA
45237043 AAACGTCAAAAAAAAATTATTT-CTCACATGACC-ACTGTAGCGAAATCGCGTCCACGAGGCCAC
1 AAACGTC--AAAAAAATTATTTCCT-ACATGACCAACTGTAGCGAAATCGCGTCCACGAGGCCAC
* *
45237106 TATTTCACAATTTCTTCTTAAATAGCATCCTAGTAGAAGCGATTT
63 GATTTCACAATTTCTTCTCAAATAGCATCCTAGTAGAAGCGATTT
45237151 CCCACTATTT
Statistics
Matches: 97, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
124 7 0.07
125 69 0.71
126 21 0.22
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (124 bp):
AAACGTCAAAAAAATTATTTCCTACATGACCAACTGTAGCGAAATCGCGTCCACGAGGCCACGAT
TTCACAATTTCTTCTCAAATAGCATCCTAGTAGAAGCGATTTTATACTATTTCCTCAAA
Found at i:45237158 original size:125 final size:124
Alignment explanation
Indices: 45236896--45237160 Score: 347
Period size: 125 Copynumber: 2.1 Consensus size: 124
45236886 CCACGAGGGC
* * **
45236896 GCGATTTGACACTATTTGCTC-GGAAACGTCAAAAAAATTATTTCCTACATGACCAACTGTAGCG
1 GCGATTTCACACTATTTCCTCAAAAAACGTCAAAAAAATTATTTCCTACATGACCAACTGTAGCG
* * * * **
45236960 AAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCATATAGCATCCTGGTATCA
66 AAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTAGTAGAA
* *
45237019 GCGATTTTATACTATTTCCTCAAAAAACGTCAAAAAAAAATTATTT-CTCACATGACC-ACTGTA
1 GCGATTTCACACTATTTCCTCAAAAAACGTC--AAAAAAATTATTTCCT-ACATGACCAACTGTA
* *
45237082 GCGAAATCGCGTCCACGAGGCCACTATTTCACAATTTCTTCTTAAATAGCATCCTAGTAGAA
63 GCGAAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTAGTAGAA
*
45237144 GCGATTTCCCACTATTT
1 GCGATTTCACACTATTT
45237161 AACCAGAAAT
Statistics
Matches: 122, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
123 18 0.15
124 7 0.06
125 76 0.62
126 21 0.17
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (124 bp):
GCGATTTCACACTATTTCCTCAAAAAACGTCAAAAAAATTATTTCCTACATGACCAACTGTAGCG
AAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTAGTAGAA
Found at i:45243633 original size:109 final size:109
Alignment explanation
Indices: 45243451--45243783 Score: 485
Period size: 109 Copynumber: 3.1 Consensus size: 109
45243441 AAAATATAAG
* * *
45243451 AGGATATTTGGCTATGTGGTCCAACGAG--AAAT-GAAACGTCCAGC-CATTAGGGCACGTTTTT
1 AGGATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAAC--CCAGCACATTAGGGCACGTTTTC
45243512 TCGAATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTAAA
64 TCGAATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTAAA
* * *
45243558 AGGATATTCGGCTATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGGGCATGTTTTCTC
1 AGGATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
* *
45243623 GAATTTCCAAACGCAAAATATTGCCTTATTTTAAAATTTTTAAA
66 GAATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTAAA
*
45243667 AGGATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGCTTTCTC
1 AGGATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
* * * * **
45243732 GAATTTCTAAACGCAAAACATTGCCTTACTGTGAATTTTTTTTA
66 GAATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTAAA
45243776 AGGATATT
1 AGGATATT
45243784 AATATGCATA
Statistics
Matches: 202, Mismatches: 20, Indels: 6
0.89 0.09 0.03
Matches are distributed among these distances:
107 24 0.12
108 5 0.02
109 168 0.83
110 5 0.02
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Consensus pattern (109 bp):
AGGATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
GAATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTAAA
Found at i:45246095 original size:41 final size:42
Alignment explanation
Indices: 45246032--45246229 Score: 161
Period size: 41 Copynumber: 4.6 Consensus size: 42
45246022 CTTCAGTCTA
*
45246032 CTCCATTGCAACTTCAGGGAGATAAGACTGG-ATGCGATCTG
1 CTCCATTGCAACTTCAAGGAGATAAGACTGGTATGCGATCTG
* * *** *
45246073 CTCTATTGCAACTTCAAAGAGATAAGAGCTGTGGCT-TTTAATCCG
1 CTCCATTGCAACTTCAAGGAGATAAGA-C--TGG-TATGCGATCTG
* * * * * *
45246118 CTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTG-TCTG
1 CTCCATTGCAACTTCAAGGAGATAAGACTGG--TATGC-GATCTG
*
45246162 CTCCACTGCAACTTCAAGGAGATAAGACTGG-ATGCGATCTG
1 CTCCATTGCAACTTCAAGGAGATAAGACTGGTATGCGATCTG
* *
45246203 CTCTATTGCAACTTCAAAGAGATAAGA
1 CTCCATTGCAACTTCAAGGAGATAAGA
45246230 TCTGTGGTTT
Statistics
Matches: 123, Mismatches: 25, Indels: 18
0.74 0.15 0.11
Matches are distributed among these distances:
40 1 0.01
41 54 0.44
42 4 0.03
43 1 0.01
44 36 0.29
45 27 0.22
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (42 bp):
CTCCATTGCAACTTCAAGGAGATAAGACTGGTATGCGATCTG
Found at i:45246172 original size:130 final size:132
Alignment explanation
Indices: 45245978--45246321 Score: 440
Period size: 130 Copynumber: 2.6 Consensus size: 132
45245968 GGATTTCTCG
* * * ** * * *
45245978 TTTTAATCCGCTACACTGCAACTTTAGAGAGATAGGATTAGTAGCTTCAGTCTACTCCATTGCAA
1 TTTTAATCCGCTCCACTGCAACTTTAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAA
45246043 CTTCAGGGAGATAAGACTGGATGCGATCTGCTCTATTGCAACTTCAAAGAGATAAGAGCTGTGG-
66 CTTCAGGGAGATAAGACTGGATGCGATCTGCTCTATTGCAACTTCAAAGAGATAAGAGCTGTGGT
45246107 C-
131 CT
*
45246108 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAA
1 TTTTAATCCGCTCCACTGCAACTTTAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAA
* *
45246173 CTTCAAGGAGATAAGACTGGATGCGATCTGCTCTATTGCAACTTCAAAGAGATAAGATCTGTGGT
66 CTTCAGGGAGATAAGACTGGATGCGATCTGCTCTATTGCAACTTCAAAGAGATAAGAGCTGTGG-
45246238 TTTTTTTTCTT
130 -------TC-T
* * * * * *
45246249 TTTTAATCCGCTCCATTGGAGCTTTAGGGAGGTAGGATTGGTTTCTTTTGTCTGCTTCACTGCAA
1 TTTTAATCCGCTCCACTGCAACTTTAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAA
45246314 CTTCAGGG
66 CTTCAGGG
45246322 GTATGGGTAA
Statistics
Matches: 184, Mismatches: 19, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
130 118 0.64
139 1 0.01
141 65 0.35
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.33
Consensus pattern (132 bp):
TTTTAATCCGCTCCACTGCAACTTTAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAA
CTTCAGGGAGATAAGACTGGATGCGATCTGCTCTATTGCAACTTCAAAGAGATAAGAGCTGTGGT
CT
Found at i:45258227 original size:105 final size:106
Alignment explanation
Indices: 45257977--45258270 Score: 423
Period size: 105 Copynumber: 2.8 Consensus size: 106
45257967 AAGATATAAG
* *
45257977 AGGATATTTGGCTATTTGGTCCAACGAG--AAATCGAAACTCAGCACATTAGGGCACGTTTTCTC
1 AGGATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
* *
45258040 GAATTTCCAAACGCAAAACATTGCCTTATTTTGAATTTTTTAAA
66 GAATTTCCAAACGC--AA-ATTGCCTTATTTTAAAATTTTTAAA
* * * * * * *
45258084 AGGATATTCGGCTATTTGATTGAACAAGAAAAATCGAAACCCAGCACATTAGAGAATGTTTTCTC
1 AGGATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
45258149 GAATTTCCAAACGCAAA-TGCCTTATTTTAAAATTTTTAAA
66 GAATTTCCAAACGCAAATTGCCTTATTTTAAAATTTTTAAA
* *
45258189 AGGATATTTGGATATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTT
1 AGGATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
45258254 GAATTTCCAAACGCAAA
66 GAATTTCCAAACGCAAA
45258271 ACATTACCTT
Statistics
Matches: 165, Mismatches: 20, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
105 94 0.57
106 1 0.01
107 25 0.15
109 45 0.27
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30
Consensus pattern (106 bp):
AGGATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
GAATTTCCAAACGCAAATTGCCTTATTTTAAAATTTTTAAA
Found at i:45259035 original size:16 final size:16
Alignment explanation
Indices: 45259016--45259046 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
45259006 ATGAATAAAC
45259016 AATAACAATAATAATT
1 AATAACAATAATAATT
*
45259032 AATAATAATAATAAT
1 AATAACAATAATAAT
45259047 AGTATTAGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (16 bp):
AATAACAATAATAATT
Found at i:45259531 original size:11 final size:12
Alignment explanation
Indices: 45259511--45259535 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
45259501 TTTTTCATTC
45259511 AAAAGAAAAAAA
1 AAAAGAAAAAAA
45259523 AAAAGAAAAAAA
1 AAAAGAAAAAAA
45259535 A
1 A
45259536 CTCTCTCAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (12 bp):
AAAAGAAAAAAA
Found at i:45262026 original size:64 final size:64
Alignment explanation
Indices: 45261947--45262123 Score: 238
Period size: 64 Copynumber: 2.8 Consensus size: 64
45261937 ATATATATTT
* * *
45261947 AAAGTTCTTGAGCTGAATTTAGTGTATGAATTTTATATACATATGTGGTTTAAATATAGGTTAC
1 AAAGTTCTTGAGCTGAATTTAATGTATGAATTTTACATACATATGTGGTTCAAATATAGGTTAC
*
45262011 AAAGTTCTTGAGCTGAATTTAATGTATGAATTTTACATACATATGTGGTTCGAATATAGGTTAC
1 AAAGTTCTTGAGCTGAATTTAATGTATGAATTTTACATACATATGTGGTTCAAATATAGGTTAC
* *
45262075 AAA-TTCTTTGAACTGAATTTTAATGT-TGTAA-ATT--ATACATATGTGGTTC
1 AAAGTTC-TTGAGCTGAA-TTTAATGTATG-AATTTTACATACATATGTGGTTC
45262124 GAATGTTTGT
Statistics
Matches: 104, Mismatches: 6, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
62 15 0.14
63 3 0.03
64 76 0.73
65 10 0.10
ACGTcount: A:0.33, C:0.08, G:0.18, T:0.42
Consensus pattern (64 bp):
AAAGTTCTTGAGCTGAATTTAATGTATGAATTTTACATACATATGTGGTTCAAATATAGGTTAC
Found at i:45262297 original size:41 final size:41
Alignment explanation
Indices: 45262233--45262351 Score: 211
Period size: 41 Copynumber: 2.9 Consensus size: 41
45262223 ATCTGAGATT
*
45262233 ATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGAACTGA
1 ATCAGGTTATAAGCCTAGCAGGCTAAGTGCCGGTGAACTGA
*
45262274 ATCGGGTTATAAGCCTAGCAGGCTAAGTGCCGGTGAACTGA
1 ATCAGGTTATAAGCCTAGCAGGCTAAGTGCCGGTGAACTGA
*
45262315 ATCAGGTTATAAGCCTAGCAGGCTAAGTGCCAGTGAA
1 ATCAGGTTATAAGCCTAGCAGGCTAAGTGCCGGTGAA
45262352 TTTATTTAAA
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 74 1.00
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.21
Consensus pattern (41 bp):
ATCAGGTTATAAGCCTAGCAGGCTAAGTGCCGGTGAACTGA
Found at i:45263745 original size:90 final size:91
Alignment explanation
Indices: 45263644--45263813 Score: 252
Period size: 91 Copynumber: 1.9 Consensus size: 91
45263634 CTTTCTTATA
* * ** **
45263644 TTTTTTCAAAAAAGAGATTCGAGTTCTAAAATTAAAT-AATTAAAAATGTTGAAACGGCCTCAAC
1 TTTTTTAAAAAAAGAGATTCAAGTTCTAAAACCAAATAAATTAAAAATGTTGAAACAACCTCAAC
45263708 AGAAATCTCGAAGCTTTCTTATATTT
66 AGAAATCTCGAAGCTTTCTTATATTT
* * *
45263734 TTTTTTAAAAAAAGAGATTCAAGTTTTAAAACCAAATAAATTGAAAATGTTGAAACAACCTCGAC
1 TTTTTTAAAAAAAGAGATTCAAGTTCTAAAACCAAATAAATTAAAAATGTTGAAACAACCTCAAC
45263799 AGAAATCTCGAAGCT
66 AGAAATCTCGAAGCT
45263814 CAACTCATTT
Statistics
Matches: 70, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
90 32 0.46
91 38 0.54
ACGTcount: A:0.43, C:0.14, G:0.12, T:0.31
Consensus pattern (91 bp):
TTTTTTAAAAAAAGAGATTCAAGTTCTAAAACCAAATAAATTAAAAATGTTGAAACAACCTCAAC
AGAAATCTCGAAGCTTTCTTATATTT
Found at i:45264263 original size:33 final size:33
Alignment explanation
Indices: 45264226--45264294 Score: 138
Period size: 33 Copynumber: 2.1 Consensus size: 33
45264216 TAAAAATGCT
45264226 AAGCCTTCATAAGTAACCCTCCATTCAAATATA
1 AAGCCTTCATAAGTAACCCTCCATTCAAATATA
45264259 AAGCCTTCATAAGTAACCCTCCATTCAAATATA
1 AAGCCTTCATAAGTAACCCTCCATTCAAATATA
45264292 AAG
1 AAG
45264295 AAGTGTATCC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.41, C:0.26, G:0.07, T:0.26
Consensus pattern (33 bp):
AAGCCTTCATAAGTAACCCTCCATTCAAATATA
Found at i:45267359 original size:22 final size:22
Alignment explanation
Indices: 45267324--45267369 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
45267314 CAAATTTCAA
45267324 TCAAGTTTCAAAAGTCCAAA-AT
1 TCAAGTTTCAAAAGT-CAAATAT
45267346 TCAA-TTTCACAAAGTCAAATAT
1 TCAAGTTTCA-AAAGTCAAATAT
45267368 TC
1 TC
45267370 TAGTCTAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.30
Consensus pattern (22 bp):
TCAAGTTTCAAAAGTCAAATAT
Found at i:45270771 original size:15 final size:15
Alignment explanation
Indices: 45270751--45270781 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
45270741 AAAATAAAGC
45270751 AAATAATAGGCTGTT
1 AAATAATAGGCTGTT
45270766 AAATAATAGGCTGTT
1 AAATAATAGGCTGTT
45270781 A
1 A
45270782 TGAAACAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.19, T:0.32
Consensus pattern (15 bp):
AAATAATAGGCTGTT
Found at i:45272964 original size:37 final size:36
Alignment explanation
Indices: 45272923--45273000 Score: 111
Period size: 36 Copynumber: 2.1 Consensus size: 36
45272913 AATAAGTCAA
*
45272923 AATTTGAGAAAAAAAATCAATGTTTAAATCGGTTTAT
1 AATTT-AGAAAAAAAATCAATGTTTAAATCGGTTTAC
***
45272960 AATTTTTTAAAAAAATCAATGTTTAAATCGGTTTAC
1 AATTTAGAAAAAAAATCAATGTTTAAATCGGTTTAC
45272996 AATTT
1 AATTT
45273001 TTTAGGCTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 32 0.86
37 5 0.14
ACGTcount: A:0.44, C:0.06, G:0.10, T:0.40
Consensus pattern (36 bp):
AATTTAGAAAAAAAATCAATGTTTAAATCGGTTTAC
Found at i:45273003 original size:37 final size:36
Alignment explanation
Indices: 45272932--45273004 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
45272922 AAATTTGAGA
*
45272932 AAAAAAATCAATGTTTAAATCGGTTTATAATTTTTT
1 AAAAAAATCAATGTTTAAATCGGTTTACAATTTTTT
45272968 AAAAAAATCAATGTTTAAATCGGTTTACAATTTTTT
1 AAAAAAATCAATGTTTAAATCGGTTTACAATTTTTT
45273004 A
1 A
45273005 GGCTTAATAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.42, C:0.07, G:0.08, T:0.42
Consensus pattern (36 bp):
AAAAAAATCAATGTTTAAATCGGTTTACAATTTTTT
Found at i:45274256 original size:18 final size:19
Alignment explanation
Indices: 45274233--45274278 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 19
45274223 AACTCTCTTT
45274233 ATTCTCTCTAAA-CTC-CAA
1 ATTCTCTC-AAATCTCTCAA
45274251 ATTCTCTCAAATCTCTCAA
1 ATTCTCTCAAATCTCTCAA
45274270 ATT-TCTCAA
1 ATTCTCTCAA
45274279 TTTTTGTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 3 0.12
18 17 0.65
19 6 0.23
ACGTcount: A:0.33, C:0.30, G:0.00, T:0.37
Consensus pattern (19 bp):
ATTCTCTCAAATCTCTCAA
Found at i:45278074 original size:50 final size:50
Alignment explanation
Indices: 45277971--45278163 Score: 242
Period size: 50 Copynumber: 3.7 Consensus size: 50
45277961 GGGAATGAGA
*
45277971 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATGAGAGG
*
45278027 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
** * * **
45278077 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* *
45278127 TCCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
45278164 ATACAGAAAA
Statistics
Matches: 123, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
50 83 0.67
53 3 0.02
55 1 0.01
56 36 0.29
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
Found at i:45278197 original size:49 final size:48
Alignment explanation
Indices: 45278027--45278202 Score: 156
Period size: 50 Copynumber: 3.6 Consensus size: 48
45278017 TTATGAGAGG
* * * * * **
45278027 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-C-ATAAGAAAAC
** * *
45278077 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-C-ATAAGAAAAC
* * *
45278127 TCCCATGTAAGACCATATCTGGGATATGGCATTGGCA-ATACAGAAAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACATA-AGAAAAC
*
45278175 ATCCCATGTAAGACTATGTCTGGGACAT
1 -TCCCATGTAAGACCATGTCTGGGACAT
45278203 AGCTTTGGCA
Statistics
Matches: 107, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
47 3 0.03
48 5 0.05
49 24 0.22
50 75 0.70
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (48 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACATAAGAAAAC
Found at i:45285349 original size:50 final size:50
Alignment explanation
Indices: 45285227--45285419 Score: 269
Period size: 50 Copynumber: 3.8 Consensus size: 50
45285217 GATAATAACA
* *** *
45285227 TGCCAAAGCCATGTCCCAGACATGGTCTTACATAGGGTGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAT-GGGACCTCTCATCTCGG
* * ** *
45285278 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTAATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
45285328 TGCCAACGCCATATCCCAGACATGGTCTTACATGGGACCTCTCATCTTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
45285378 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
45285420 TTACCCAAAT
Statistics
Matches: 125, Mismatches: 17, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
50 96 0.77
51 29 0.23
ACGTcount: A:0.21, C:0.31, G:0.23, T:0.25
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:45288940 original size:3 final size:3
Alignment explanation
Indices: 45288932--45288960 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
45288922 AGTGTATCTA
45288932 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
45288961 CCATTTAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:45291401 original size:23 final size:24
Alignment explanation
Indices: 45291375--45291429 Score: 78
Period size: 23 Copynumber: 2.4 Consensus size: 24
45291365 CAATATTAAG
*
45291375 ATTTTTTA-ATAAATTAAATAAAT
1 ATTTTTTATATAAATAAAATAAAT
*
45291398 A-TTTTTATTTAAATAAAATAAAT
1 ATTTTTTATATAAATAAAATAAAT
45291421 ATTTTTTAT
1 ATTTTTTAT
45291430 TTCAAAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 6 0.21
23 15 0.54
24 7 0.25
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (24 bp):
ATTTTTTATATAAATAAAATAAAT
Found at i:45297908 original size:21 final size:23
Alignment explanation
Indices: 45297874--45297934 Score: 86
Period size: 23 Copynumber: 2.5 Consensus size: 23
45297864 CATTCTTATA
45297874 ATTTATATATTATAAAATATAATAAT
1 ATTTATATA-TAT--AATATAATAAT
*
45297900 ATTTATATATATTATATAATAAT
1 ATTTATATATATAATATAATAAT
45297923 ATTTATATATAT
1 ATTTATATATAT
45297935 TTAAATTATT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
23 22 0.65
25 3 0.09
26 9 0.26
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
ATTTATATATATAATATAATAAT
Found at i:45297911 original size:10 final size:10
Alignment explanation
Indices: 45297898--45297937 Score: 53
Period size: 10 Copynumber: 3.7 Consensus size: 10
45297888 AAATATAATA
45297898 ATATTTATAT
1 ATATTTATAT
45297908 ATATTATATAAT
1 ATATT-TAT-AT
45297920 AATATTTATAT
1 -ATATTTATAT
45297931 ATATTTA
1 ATATTTA
45297938 AATTATTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 12 0.44
11 5 0.19
12 5 0.19
13 5 0.19
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (10 bp):
ATATTTATAT
Found at i:45297930 original size:14 final size:13
Alignment explanation
Indices: 45297890--45297931 Score: 54
Period size: 14 Copynumber: 3.4 Consensus size: 13
45297880 ATATTATAAA
45297890 ATATAATAATATT
1 ATATAATAATATT
45297903 -TAT-AT-ATATT
1 ATATAATAATATT
45297913 ATATAATAATATTT
1 ATATAATAATA-TT
45297927 ATATA
1 ATATA
45297932 TATTTAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
10 5 0.20
11 5 0.20
12 5 0.20
13 3 0.12
14 7 0.28
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
ATATAATAATATT
Found at i:45297949 original size:21 final size:23
Alignment explanation
Indices: 45297890--45297935 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
45297880 ATATTATAAA
45297890 ATATAATAATATTTATATATATT
1 ATATAATAATATTTATATATATT
45297913 ATATAATAATATTTATATATATT
1 ATATAATAATATTTATATATATT
45297936 TAAATTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
ATATAATAATATTTATATATATT
Found at i:45301151 original size:30 final size:31
Alignment explanation
Indices: 45301083--45301155 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 31
45301073 CAAACTGAAA
* *
45301083 AAACTCAAGTACCAAAATAAATATCGAAGCT
1 AAACTCAAGTATCAAAATAAATATCAAAGCT
* *
45301114 AAACTCAAGTATCAAAGTAAATATTAAAGC-
1 AAACTCAAGTATCAAAATAAATATCAAAGCT
*
45301144 CAACTCAAGTAT
1 AAACTCAAGTAT
45301156 TAAATTAGAA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
30 11 0.30
31 26 0.70
ACGTcount: A:0.51, C:0.18, G:0.10, T:0.22
Consensus pattern (31 bp):
AAACTCAAGTATCAAAATAAATATCAAAGCT
Found at i:45303669 original size:17 final size:17
Alignment explanation
Indices: 45303649--45303681 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
45303639 TCTTTTTTTT
*
45303649 TTTCTTTTAAATTATTG
1 TTTCATTTAAATTATTG
45303666 TTTCATTTAAATTATT
1 TTTCATTTAAATTATT
45303682 TGTCTCATCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.06, G:0.03, T:0.64
Consensus pattern (17 bp):
TTTCATTTAAATTATTG
Found at i:45303689 original size:18 final size:17
Alignment explanation
Indices: 45303654--45303689 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
45303644 TTTTTTTTCT
*
45303654 TTTAAATTATTGTTTCA
1 TTTAAATTATTGTCTCA
45303671 TTTAAATTATTTGTCTCA
1 TTTAAATTA-TTGTCTCA
45303689 T
1 T
45303690 CTCCACTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.28, C:0.08, G:0.06, T:0.58
Consensus pattern (17 bp):
TTTAAATTATTGTCTCA
Found at i:45303849 original size:12 final size:14
Alignment explanation
Indices: 45303820--45303848 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
45303810 CATGCATGAG
45303820 AAATATAAAGATAA
1 AAATATAAAGATAA
45303834 AAATA-AAAGATAA
1 AAATATAAAGATAA
45303847 AA
1 AA
45303849 TGGAGAGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (14 bp):
AAATATAAAGATAA
Done.