Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53248092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1300000 characters in sequence are not A, C, G, or T
File 157 of 175
Found at i:47400253 original size:27 final size:27
Alignment explanation
Indices: 47400188--47400253 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
47400178 AGGCCAATGG
* * *
47400188 CATTGGTGGCACCAAATGTGCCAAAGC
1 CATTGGCGGCACCAAAGGTGCCAAAAC
* *
47400215 CATTGACAGCACCAAAGGTGCCAAAAC
1 CATTGGCGGCACCAAAGGTGCCAAAAC
47400242 CATTGGCGGCAC
1 CATTGGCGGCAC
47400254 TACTCGTATT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.32, C:0.29, G:0.24, T:0.15
Consensus pattern (27 bp):
CATTGGCGGCACCAAAGGTGCCAAAAC
Found at i:47405137 original size:27 final size:27
Alignment explanation
Indices: 47405095--47405150 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
47405085 TTAGCCACAT
*
47405095 ATTGGTGCCGCCTTTTTATTCCTCTCC
1 ATTGGTGCCGCCTTTTTATTCCCCTCC
*
47405122 ATTGGTGCCGCTTTTTTATTCCCCTCC
1 ATTGGTGCCGCCTTTTTATTCCCCTCC
47405149 AT
1 AT
47405151 CACCTTCTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.09, C:0.32, G:0.14, T:0.45
Consensus pattern (27 bp):
ATTGGTGCCGCCTTTTTATTCCCCTCC
Found at i:47405349 original size:15 final size:16
Alignment explanation
Indices: 47405323--47405352 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
47405313 AATAAAAATA
47405323 TATTATTTTTATATTT
1 TATTATTTTTATATTT
47405339 TATTA-TTTTATATT
1 TATTATTTTTATATT
47405353 ATTTCAGTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (16 bp):
TATTATTTTTATATTT
Found at i:47405939 original size:36 final size:37
Alignment explanation
Indices: 47405887--47406073 Score: 144
Period size: 36 Copynumber: 5.0 Consensus size: 37
47405877 CTTTTTTTTC
*
47405887 TTTTTTTTTC-C-T-TCCTTCCTTCCCTCTT-CTTC-T
1 TTTTTTTTTCTCTTCTCCTTCCTTTCCT-TTCCTTCTT
*
47405920 TTTTTTTTTCTCTTCTCCTTTCCTTTTCTTTCCTTCTT
1 TTTTTTTTTCTCTTCTCC-TTCCTTTCCTTTCCTTCTT
*
47405958 TTTCTTTCTTT-T-TTCTTC-TCCTTTCCTCTTCTTCTTCTT
1 TTT-TTT-TTTCTCTTCTCCTTCCTTTCCT-TTC--CTTCTT
*
47405997 TCCTTTTTTTTCTCTTCTCCTCTCCTTTTCTTTCCTTCTT
1 T--TTTTTTTTCTCTTCTCCT-TCCTTTCCTTTCCTTCTT
*
47406037 TTTCTTTCTTTC-C-TCTCCTTCCTTT-CTTTCTTTCTT
1 TTT-TTT-TTTCTCTTCTCCTTCCTTTCCTTTCCTTCTT
47406073 T
1 T
47406074 CCCTCTCCTT
Statistics
Matches: 128, Mismatches: 7, Indels: 35
0.75 0.04 0.21
Matches are distributed among these distances:
33 10 0.08
34 1 0.01
35 1 0.01
36 24 0.19
37 21 0.16
38 17 0.13
39 18 0.14
40 18 0.14
41 7 0.05
42 3 0.02
43 8 0.06
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (37 bp):
TTTTTTTTTCTCTTCTCCTTCCTTTCCTTTCCTTCTT
Found at i:47405952 original size:10 final size:10
Alignment explanation
Indices: 47405937--47406075 Score: 63
Period size: 10 Copynumber: 14.6 Consensus size: 10
47405927 TTCTCTTCTC
47405937 CTTTCCTTTT
1 CTTTCCTTTT
47405947 CTTTCCTTCTT
1 CTTTCCTT-TT
47405958 -TTT-C-TTT
1 CTTTCCTTTT
47405965 C-TT--TTTT
1 CTTTCCTTTT
*
47405972 CTTCTCCTTTC
1 CTT-TCCTTTT
47405983 CTCTT-CTTCTT
1 CT-TTCCTT-TT
47405994 CTTTCCTTTT
1 CTTTCCTTTT
* *
47406004 TTTTCTCTTCTC
1 CTTTC-CTT-TT
*
47406016 CTCTCCTTTT
1 CTTTCCTTTT
47406026 CTTTCCTTCTT
1 CTTTCCTT-TT
47406037 -TTT-C-TTT
1 CTTTCCTTTT
*
47406044 CTTTCC-TCT
1 CTTTCCTTTT
*
47406053 CCTTCC-TTT
1 CTTTCCTTTT
47406062 CTTT-C-TTT
1 CTTTCCTTTT
47406070 CTTTCC
1 CTTTCC
47406076 CTCTCCTTTC
Statistics
Matches: 101, Mismatches: 12, Indels: 33
0.69 0.08 0.23
Matches are distributed among these distances:
7 10 0.10
8 14 0.14
9 17 0.17
10 33 0.33
11 22 0.22
12 5 0.05
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (10 bp):
CTTTCCTTTT
Found at i:47405963 original size:43 final size:42
Alignment explanation
Indices: 47405906--47406073 Score: 178
Period size: 38 Copynumber: 4.2 Consensus size: 42
47405896 CCTTCCTTCC
* *
47405906 TTCCCTCTTCTTCTTTTTTTTTTCTCTTCTCCTTTCCTTTTCT
1 TTCCTTCTTTTTC-TTTTTTTTTCTCTTCTCCTTTCCTTTTCT
* *
47405949 TTCCTTCTTTTTCTTTCTTTTT-TCTTCTCCTTTCCTCTTC-
1 TTCCTTCTTTTTCTTTTTTTTTCTCTTCTCCTTTCCTTTTCT
* *
47405989 TT-CTTC--TTTCCTTTTTTTTCTCTTCTCCTCTCCTTTTCT
1 TTCCTTCTTTTTCTTTTTTTTTCTCTTCTCCTTTCCTTTTCT
*
47406028 TTCCTTCTTTTTC--TTTCTTTC-C-TCTCC-TTCC-TTTCT
1 TTCCTTCTTTTTCTTTTTTTTTCTCTTCTCCTTTCCTTTTCT
*
47406064 TTCTTTCTTT
1 TTCCTTCTTT
47406074 CCCTCTCCTT
Statistics
Matches: 109, Mismatches: 11, Indels: 17
0.80 0.08 0.12
Matches are distributed among these distances:
36 14 0.13
37 14 0.13
38 21 0.19
39 7 0.06
40 13 0.12
41 17 0.16
42 12 0.11
43 11 0.10
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (42 bp):
TTCCTTCTTTTTCTTTTTTTTTCTCTTCTCCTTTCCTTTTCT
Found at i:47405971 original size:47 final size:49
Alignment explanation
Indices: 47405914--47406014 Score: 131
Period size: 47 Copynumber: 2.1 Consensus size: 49
47405904 CCTTCCCTCT
*
47405914 TCTTCTTTTTTTTTTCT-CTTCTCCT-TTCCTT-TTCTTTCCTTCTTTTTC
1 TCTTCTTTTTTTCTTCTCCTT-TCCTCTT-CTTCTTCTTTCCTTCTTTTTC
*
47405962 T-TTC-TTTTTTCTTCTCCTTTCCTCTTCTTCTTCTTTCCTTTTTTTTC
1 TCTTCTTTTTTTCTTCTCCTTTCCTCTTCTTCTTCTTTCCTTCTTTTTC
47406009 TCTTCT
1 TCTTCT
47406015 CCTCTCCTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 9
0.81 0.04 0.16
Matches are distributed among these distances:
46 17 0.37
47 25 0.54
48 4 0.09
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (49 bp):
TCTTCTTTTTTTCTTCTCCTTTCCTCTTCTTCTTCTTTCCTTCTTTTTC
Found at i:47406010 original size:79 final size:76
Alignment explanation
Indices: 47405881--47406047 Score: 243
Period size: 79 Copynumber: 2.2 Consensus size: 76
47405871 AAATTACTTT
*
47405881 TTTTTCTTT-TTTTTTCCTTCCTTCCTTCCCTCTTCTTCTTTTTTTTTTCTCTTCTCCTTTCCTT
1 TTTTTCTTTCTTTTTTCCTTCCTTCCTTCCCTCTTCTTCTTTTTTTTTTCTCTTCTCCTCTCCTT
47405945 TTCTTTCCTTC
66 TTCTTTCCTTC
47405956 TTTTTCTTTCTTTTTT-CTT-C-TCCTTTCCTCTTCTTCTTCTTTCCTTTTTTTTCTCTTCTCCT
1 TTTTTCTTTCTTTTTTCCTTCCTTCC-TTCC-C-TCTTCTTC-TT--TTTTTTTTCTCTTCTCCT
47406018 CTCCTTTTCTTTCCTTC
60 CTCCTTTTCTTTCCTTC
47406035 TTTTTCTTTCTTT
1 TTTTTCTTTCTTT
47406048 CCTCTCCTTC
Statistics
Matches: 84, Mismatches: 1, Indels: 10
0.88 0.01 0.11
Matches are distributed among these distances:
73 3 0.04
74 5 0.06
75 13 0.15
76 14 0.17
77 2 0.02
79 47 0.56
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (76 bp):
TTTTTCTTTCTTTTTTCCTTCCTTCCTTCCCTCTTCTTCTTTTTTTTTTCTCTTCTCCTCTCCTT
TTCTTTCCTTC
Found at i:47406058 original size:27 final size:27
Alignment explanation
Indices: 47406028--47406083 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
47406018 CTCCTTTTCT
*
47406028 TTCCTTCTTTTTCTTTCTTT-CCTCTCC
1 TTCCTT-TCTTTCTTTCTTTCCCTCTCC
47406055 TTCCTTTCTTTCTTTCTTTCCCTCTCC
1 TTCCTTTCTTTCTTTCTTTCCCTCTCC
47406082 TT
1 TT
47406084 TCAGCTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 12 0.44
27 15 0.56
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (27 bp):
TTCCTTTCTTTCTTTCTTTCCCTCTCC
Found at i:47406091 original size:26 final size:26
Alignment explanation
Indices: 47406037--47406091 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
47406027 TTTCCTTCTT
**
47406037 TTTCTTTCTTTCCTCTCCTTCCTTTC
1 TTTCTTTCTTTCCTCTCCTTCCTAGC
*
47406063 TTTCTTTCTTTCCCTCTCCTTTC-AGC
1 TTTCTTTCTTT-CCTCTCCTTCCTAGC
47406089 TTT
1 TTT
47406092 TTGCATTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 15 0.60
27 10 0.40
ACGTcount: A:0.02, C:0.36, G:0.02, T:0.60
Consensus pattern (26 bp):
TTTCTTTCTTTCCTCTCCTTCCTAGC
Found at i:47406172 original size:26 final size:30
Alignment explanation
Indices: 47406112--47406181 Score: 105
Period size: 26 Copynumber: 2.5 Consensus size: 30
47406102 TTTGTTTTTT
47406112 TTAT-ATATTTTGGTAAATAATAAATATAA
1 TTATAATATTTTGGTAAATAATAAATATAA
47406141 TTATAATATTTTGGTAAAT-A-AAA-A-AA
1 TTATAATATTTTGGTAAATAATAAATATAA
47406167 TTATAATATTTTGGT
1 TTATAATATTTTGGT
47406182 TATTTTTATT
Statistics
Matches: 40, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
26 17 0.43
27 1 0.03
28 3 0.08
29 5 0.12
30 14 0.35
ACGTcount: A:0.46, C:0.00, G:0.09, T:0.46
Consensus pattern (30 bp):
TTATAATATTTTGGTAAATAATAAATATAA
Found at i:47406549 original size:21 final size:20
Alignment explanation
Indices: 47406525--47406563 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
47406515 TTATAAATAA
*
47406525 AATATAATTTTTTTAGTAATT
1 AATATAATTTATTT-GTAATT
47406546 AATATAATTTATTTGTAA
1 AATATAATTTATTTGTAA
47406564 AATTGATGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (20 bp):
AATATAATTTATTTGTAATT
Found at i:47406704 original size:33 final size:33
Alignment explanation
Indices: 47406639--47406704 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
47406629 ATGATAAATT
*
47406639 GTATTTAAATAATTTAATATAATGATGCATAAA
1 GTATTTAAATAATTTAATATAATGATACATAAA
* *
47406672 GTATTTATAA-AATTTAATTTAATGATATATAAA
1 GTATTTA-AATAATTTAATATAATGATACATAAA
47406705 AAAATAAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 27 0.93
34 2 0.07
ACGTcount: A:0.48, C:0.02, G:0.08, T:0.42
Consensus pattern (33 bp):
GTATTTAAATAATTTAATATAATGATACATAAA
Found at i:47412166 original size:43 final size:44
Alignment explanation
Indices: 47411989--47412154 Score: 189
Period size: 43 Copynumber: 3.8 Consensus size: 44
47411979 AATATTGAGA
* * *
47411989 AAGACCACGTCTGGGACGA-TGGCATTGATTTCA-GATTTACGTGT
1 AAGACCATGTCTGGGAC-ATTGGCATCGATAT-ATGATTTACGTGT
*
47412033 AAGACCATGT-TTGGACATTGGCATCG-TATATGATTTACGTGT
1 AAGACCATGTCTGGGACATTGGCATCGATATATGATTTACGTGT
* * *
47412075 AAAACCATGTCTGGGACATTGGCATC-ATATATGATTTGCGTAT
1 AAGACCATGTCTGGGACATTGGCATCGATATATGATTTACGTGT
* * *
47412118 AAGACCCTGTCTGGGACAGTGGCATCGATATTTGATT
1 AAGACCATGTCTGGGACATTGGCATCGATATATGATT
47412155 ACATGCAAGA
Statistics
Matches: 105, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
41 1 0.01
42 23 0.22
43 63 0.60
44 18 0.17
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.32
Consensus pattern (44 bp):
AAGACCATGTCTGGGACATTGGCATCGATATATGATTTACGTGT
Found at i:47414777 original size:16 final size:16
Alignment explanation
Indices: 47414758--47414929 Score: 85
Period size: 17 Copynumber: 9.8 Consensus size: 16
47414748 CGAAAGTTTT
* *
47414758 TTTTAAAATACGAGAAT
1 TTTTAAAACACGA-AAA
*
47414775 TTTTGAAAACACGAGAA
1 TTTT-AAAACACGAAAA
47414792 TTTGT-AAACACGAAAA
1 TTT-TAAAACACGAAAA
47414808 TTTTAGAAACACGAAAA
1 TTTTA-AAACACGAAAA
* *
47414825 TTTTTAGAAAAAACGAAATT
1 -TTTT--AAAACACGAAA-A
**
47414845 TTCTTAAAACACGACATTTT
1 TT-TTAAAACACGA-A--AA
* * *
47414865 TTTCTGAAACACGGGAAT
1 TTT-TAAAACAC-GAAAA
* *
47414883 TTTTAAAACAGGGAAA
1 TTTTAAAACACGAAAA
47414899 TTTTAGAAACACGAAAA
1 TTTTA-AAACACGAAAA
47414916 TTTTTAAAACACGA
1 -TTTTAAAACACGA
47414930 CATTTTTTGA
Statistics
Matches: 123, Mismatches: 16, Indels: 32
0.72 0.09 0.19
Matches are distributed among these distances:
15 1 0.01
16 22 0.18
17 42 0.34
18 30 0.24
19 13 0.11
20 14 0.11
21 1 0.01
ACGTcount: A:0.46, C:0.12, G:0.13, T:0.30
Consensus pattern (16 bp):
TTTTAAAACACGAAAA
Found at i:47415022 original size:35 final size:34
Alignment explanation
Indices: 47414970--47415184 Score: 127
Period size: 35 Copynumber: 6.1 Consensus size: 34
47414960 AATTGAAATG
* *
47414970 CGAGAATATTTTG-AAACACGAATTTTTTTTAAACG
1 CGAGAAT-TTTTGAAAACACGAA-TTTTTTGAAACA
* **
47415005 CGAGAATTTTTGAAAACATGGAA-ACTTTGAAACA
1 CGAGAATTTTTGAAAACA-CGAATTTTTTGAAACA
* * *
47415039 CTG-GAGTTTTTGAAAACACGAGAATTTGTGAAACA
1 C-GAGAATTTTTGAAAACACGA-ATTTTTTGAAACA
* * *
47415074 CGAAAATTTGTGAAAACACGTAATTTTTTTTTAAACA
1 CGAGAATTTTTGAAAACACG-AA--TTTTTTGAAACA
* *
47415111 CGAAAATTTTTG-AAACGCCAGAA-TTTTTGAAAACA
1 CGAGAATTTTTGAAAAC-AC-GAATTTTTTG-AAACA
* *
47415146 C-AAAGATTTTTGAAAACACGAAAATTTTTGAAAACA
1 CGAGA-ATTTTTGAAAACACG-AATTTTTTG-AAACA
47415182 CGA
1 CGA
47415185 AAACACTAAA
Statistics
Matches: 143, Mismatches: 20, Indels: 32
0.73 0.10 0.16
Matches are distributed among these distances:
33 2 0.01
34 38 0.27
35 53 0.37
36 25 0.17
37 24 0.17
38 1 0.01
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.31
Consensus pattern (34 bp):
CGAGAATTTTTGAAAACACGAATTTTTTGAAACA
Found at i:47415185 original size:18 final size:18
Alignment explanation
Indices: 47414756--47415187 Score: 216
Period size: 18 Copynumber: 25.0 Consensus size: 18
47414746 AACGAAAGTT
* * *
47414756 TTTTTTAAAATACGAGAA
1 TTTTTGAAAACACGAAAA
*
47414774 TTTTTGAAAACACGAGAA
1 TTTTTGAAAACACGAAAA
*
47414792 --TTTGTAAACACGAAAA
1 TTTTTGAAAACACGAAAA
*
47414808 TTTTAG-AAACACGAAAA
1 TTTTTGAAAACACGAAAA
*
47414825 TTTTTAGAAAAAACG-AAA
1 TTTTT-GAAAACACGAAAA
* **
47414843 TTTTCTTAAAACACGACATTT
1 TTTT-TGAAAACACGA-A-AA
**
47414864 TTTTCTG-AAACACGGGAA
1 TTTT-TGAAAACACGAAAA
* *
47414882 TTTTT-AAAACAGGGAAA
1 TTTTTGAAAACACGAAAA
*
47414899 TTTTAG-AAACACGAAAA
1 TTTTTGAAAACACGAAAA
* *
47414916 TTTTT-AAAACACGACAT
1 TTTTTGAAAACACGAAAA
47414933 TTTTTG-AAACACG---A
1 TTTTTGAAAACACGAAAA
*
47414947 --TTT-AAAAAAC-AAAA
1 TTTTTGAAAACACGAAAA
* ** *
47414961 --ATTG-AAATGCGAGAA
1 TTTTTGAAAACACGAAAA
*
47414976 TATTTTG-AAACACG-AAT
1 T-TTTTGAAAACACGAAAA
** * *
47414993 TTTTTTTAAACGCGAGAA
1 TTTTTGAAAACACGAAAA
* *
47415011 TTTTTGAAAACATGGAAA
1 TTTTTGAAAACACGAAAA
* * *
47415029 -CTTTG-AAACACTG-GAG
1 TTTTTGAAAACAC-GAAAA
*
47415045 TTTTTGAAAACACGAGAA
1 TTTTTGAAAACACGAAAA
*
47415063 TTTGTG-AAACACGAAAA
1 TTTTTGAAAACACGAAAA
* **
47415080 TTTGTGAAAACACGTAATT
1 TTTTTGAAAACACG-AAAA
**
47415099 TTTTTTTAAACACGAAAA
1 TTTTTGAAAACACGAAAA
* * *
47415117 TTTTTG-AAACGCCAGAA
1 TTTTTGAAAACACGAAAA
47415134 TTTTTGAAAACAC-AAAGA
1 TTTTTGAAAACACGAAA-A
47415152 TTTTTGAAAACACGAAAA
1 TTTTTGAAAACACGAAAA
47415170 TTTTTGAAAACACGAAAA
1 TTTTTGAAAACACGAAAA
47415188 CACTAAATTT
Statistics
Matches: 316, Mismatches: 66, Indels: 64
0.71 0.15 0.14
Matches are distributed among these distances:
12 8 0.03
14 7 0.02
15 3 0.01
16 24 0.08
17 113 0.36
18 124 0.39
19 23 0.07
20 8 0.03
21 6 0.02
ACGTcount: A:0.44, C:0.12, G:0.14, T:0.30
Consensus pattern (18 bp):
TTTTTGAAAACACGAAAA
Found at i:47415264 original size:9 final size:9
Alignment explanation
Indices: 47415250--47415295 Score: 83
Period size: 9 Copynumber: 5.1 Consensus size: 9
47415240 ATTCACGAGA
47415250 ATTTTTTTT
1 ATTTTTTTT
47415259 ATTTTTTTT
1 ATTTTTTTT
47415268 ATTTTTTTT
1 ATTTTTTTT
*
47415277 ATTATTTTT
1 ATTTTTTTT
47415286 ATTTTTTTT
1 ATTTTTTTT
47415295 A
1 A
47415296 AACACGAGAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (9 bp):
ATTTTTTTT
Found at i:47415307 original size:18 final size:19
Alignment explanation
Indices: 47415286--47415322 Score: 58
Period size: 18 Copynumber: 1.9 Consensus size: 19
47415276 TATTATTTTT
47415286 ATTTTTTTT-AAACACGAG
1 ATTTTTTTTAAAACACGAG
47415304 ATTTTTTTTGAAAACACGA
1 ATTTTTTTT-AAAACACGA
47415323 AAACACGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.53
20 8 0.47
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.43
Consensus pattern (19 bp):
ATTTTTTTTAAAACACGAG
Found at i:47415370 original size:17 final size:16
Alignment explanation
Indices: 47415321--47415368 Score: 64
Period size: 15 Copynumber: 3.0 Consensus size: 16
47415311 TTGAAAACAC
47415321 GAAAACACGAATTTTT
1 GAAAACACGAATTTTT
47415337 G-AAACACGGAAATTTTT
1 GAAAACAC-G-AATTTTT
47415354 GAAAACACG-ATTTTT
1 GAAAACACGAATTTTT
47415369 TTAGAAAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
15 12 0.41
16 2 0.07
17 9 0.31
18 6 0.21
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.31
Consensus pattern (16 bp):
GAAAACACGAATTTTT
Found at i:47415446 original size:17 final size:18
Alignment explanation
Indices: 47415424--47415471 Score: 57
Period size: 17 Copynumber: 2.7 Consensus size: 18
47415414 TATTATTATT
47415424 ATTTTGAAACACGTG-AA
1 ATTTTGAAACACGTGAAA
47415441 ATTTTGAAGACA--TGAAA
1 ATTTTGAA-ACACGTGAAA
47415458 ATTTTTGAAACACG
1 A-TTTTGAAACACG
47415472 ATTTTTTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
16 2 0.08
17 14 0.54
18 10 0.38
ACGTcount: A:0.42, C:0.10, G:0.17, T:0.31
Consensus pattern (18 bp):
ATTTTGAAACACGTGAAA
Found at i:47416087 original size:24 final size:25
Alignment explanation
Indices: 47416058--47416113 Score: 96
Period size: 24 Copynumber: 2.3 Consensus size: 25
47416048 CACAAAGTGG
47416058 GCTGCTTCTTTCTTATTCTTTTTTT
1 GCTGCTTCTTTCTTATTCTTTTTTT
*
47416083 -CTGCTTCTTTCTTCTTCTTTTTTT
1 GCTGCTTCTTTCTTATTCTTTTTTT
47416107 GCTGCTT
1 GCTGCTT
47416114 TTTTTTTGCT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 23 0.79
25 6 0.21
ACGTcount: A:0.02, C:0.23, G:0.09, T:0.66
Consensus pattern (25 bp):
GCTGCTTCTTTCTTATTCTTTTTTT
Found at i:47416121 original size:14 final size:15
Alignment explanation
Indices: 47416100--47416137 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
47416090 TTTCTTCTTC
47416100 TTTTTTTGC-TGCTT
1 TTTTTTTGCTTGCTT
*
47416114 TTTTTTTGCTTTGTTT
1 TTTTTTTGC-TTGCTT
47416130 TTTTTTTG
1 TTTTTTTG
47416138 GGCTGGCCTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 9 0.43
16 12 0.57
ACGTcount: A:0.00, C:0.08, G:0.13, T:0.79
Consensus pattern (15 bp):
TTTTTTTGCTTGCTT
Found at i:47416680 original size:29 final size:29
Alignment explanation
Indices: 47416647--47416762 Score: 117
Period size: 30 Copynumber: 3.9 Consensus size: 29
47416637 TGTAATTTTT
* *
47416647 AGAAAATTTAGGATTAAAATGAAATTTAA
1 AGAAAATTTAGGGTCAAAATGAAATTTAA
* * * *
47416676 TGAAAGTTTAGGGGTCTAAGTGAAATTTAA
1 AGAAAATTTA-GGGTCAAAATGAAATTTAA
*
47416706 AGAAAGTTTAAGGGTCAAAATGAAATTT-A
1 AGAAAATTT-AGGGTCAAAATGAAATTTAA
* *
47416735 GGAAAAGTTTAGGGTCAAAATGCAATTT
1 AGAAAA-TTTAGGGTCAAAATGAAATTT
47416763 TTATTTTTTA
Statistics
Matches: 72, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
29 30 0.42
30 41 0.57
31 1 0.01
ACGTcount: A:0.45, C:0.03, G:0.22, T:0.30
Consensus pattern (29 bp):
AGAAAATTTAGGGTCAAAATGAAATTTAA
Found at i:47416702 original size:30 final size:30
Alignment explanation
Indices: 47416662--47416762 Score: 125
Period size: 30 Copynumber: 3.4 Consensus size: 30
47416652 ATTTAGGATT
*
47416662 AAAATGAAATTTAATGAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
* * *
47416692 TAAGTGAAATTTAAAGAAAGTTTAAGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
*
47416722 AAAATGAAATTT-AGGAAAAGTTTA-GGGTC
1 AAAATGAAATTTAAAG-AAAGTTTAGGGGTC
*
47416751 AAAATGCAATTT
1 AAAATGAAATTT
47416763 TTATTTTTTA
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
29 18 0.29
30 44 0.71
ACGTcount: A:0.45, C:0.04, G:0.22, T:0.30
Consensus pattern (30 bp):
AAAATGAAATTTAAAGAAAGTTTAGGGGTC
Found at i:47416783 original size:14 final size:15
Alignment explanation
Indices: 47416758--47416792 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
47416748 GTCAAAATGC
*
47416758 AATTTTTATTTTTTA
1 AATTTTTATTTTTGA
47416773 AATTTTT-TTTTTGA
1 AATTTTTATTTTTGA
47416787 AATTTT
1 AATTTT
47416793 GAAAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (15 bp):
AATTTTTATTTTTGA
Found at i:47417208 original size:55 final size:54
Alignment explanation
Indices: 47417034--47417198 Score: 244
Period size: 55 Copynumber: 3.0 Consensus size: 54
47417024 CACGTGAGCC
* *
47417034 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTTGCAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTG-AA
*
47417089 AAGGCTCAACTCACCTCTCGCAATATGGGTTGATTTTTTGAAAAACAGAAATT-AA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTG-AAAACAGAAATTGAA
*
47417144 AAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACA-AAGATTGAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAA-ATTGAA
47417198 A
1 A
47417199 TTACCTCAAC
Statistics
Matches: 101, Mismatches: 5, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
52 2 0.02
53 9 0.09
54 8 0.08
55 65 0.64
56 6 0.06
57 11 0.11
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.28
Consensus pattern (54 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAA
Found at i:47417377 original size:72 final size:72
Alignment explanation
Indices: 47417145--47417411 Score: 448
Period size: 72 Copynumber: 3.7 Consensus size: 72
47417135 AGAAATTAAA
**
47417145 AGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACA-AAGATTGAAATTACCTCAAC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAA-ATTGAAATTACCTCAAC
47417209 GTGTCTTG
65 GTGTCTTG
* *
47417217 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAGAAGCAGAAATTGAAAATACCTCAAC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGA-AAACAGAAATTGAAATTACCTCAAC
47417282 GTGTCTTG
65 GTGTCTTG
47417290 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
47417355 TGTCTTG
66 TGTCTTG
*
47417362 AGGCTCAACTCATTTCTCGCAATATGAGTTG-ATTTTGAAAAACAAAAATT
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG-AAAACAGAAATT
47417412 AAAAGGCTTA
Statistics
Matches: 185, Mismatches: 7, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
71 6 0.03
72 110 0.59
73 67 0.36
74 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (72 bp):
AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
TGTCTTG
Found at i:47417510 original size:122 final size:125
Alignment explanation
Indices: 47417290--47417533 Score: 361
Period size: 122 Copynumber: 2.0 Consensus size: 125
47417280 ACGTGTCTTG
** * * * *
47417290 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTCAATTTTGAAAACAGAAACTAAAAATACCTCAACG
47417355 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG-ATTTTGAAAAACAAAAATTAAA
66 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG-AAAACAAAAATTAAA
* * *
47417415 AGGCTTAACTCACCTCTCGCAATATGAG-TCAA-TTT-AAAACATAAACTAAAAATACCTCAATG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTCAATTTTGAAAACAGAAACTAAAAATACCTCAACG
*
47417477 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATT
66 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAAAATT
47417534 GAAATTACCT
Statistics
Matches: 108, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
122 71 0.66
123 9 0.08
124 3 0.03
125 25 0.23
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31
Consensus pattern (125 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTCAATTTTGAAAACAGAAACTAAAAATACCTCAACG
TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTAAA
Found at i:47417557 original size:72 final size:72
Alignment explanation
Indices: 47417415--47418969 Score: 2590
Period size: 72 Copynumber: 21.6 Consensus size: 72
47417405 AAAAATTAAA
* ** * * * * * *
47417415 AGGCTTAACTCACCTCTCGCAATATGAG-TCAA-TTT-AAAACATAAACTAAAAATACCTCAATG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
47417477 TGTCTTG
66 TGTCTTG
47417484 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
47417549 TGTCTTG
66 TGTCTTG
*
47417556 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACGGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
47417621 TGTCTTG
66 TGTCTTG
* *
47417628 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGGAAACAGAAATTGAAAATACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
47417693 TGTCTTG
66 TGTCTTG
47417700 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
*
47417765 TGTATTTG
66 TGT-CTTG
* *
47417773 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCAGC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAATTACCTCAAC
*
47417838 GTGTCCTG
65 GTGTCTTG
* *
47417846 AGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
*
47417911 TGTCCTG
66 TGTCTTG
* * *
47417918 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATTAAAATTACCTCA
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAA-AACAGAAATTGAAATTACCTCA
* *
47417983 GCGTGTCCTG
63 ACGTGTCTTG
*
47417993 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
47418058 TGTCTTG
66 TGTCTTG
47418065 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
47418130 TGTCTTG
66 TGTCTTG
47418137 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
47418202 TGTCTTG
66 TGTCTTG
47418209 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAATTACCTCAAC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAATTACCTCAAC
47418274 GTGTCTTG
65 GTGTCTTG
*
47418282 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG-AAACAGAAATTGAAAATACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
47418346 TGTCTTG
66 TGTCTTG
*
47418353 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTCAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
47418418 TGTCTTG
66 TGTCTTG
47418425 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
47418490 TGTCTTG
66 TGTCTTG
* *
47418497 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCAGC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAATTACCTCAAC
*
47418562 GTGTCCTG
65 GTGTCTTG
*
47418570 AGGCTCAACTCATTTCTCGCAATAT-AGTTGAATTTTGAAAAC--AAATTGAAATTACCTCAGCG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
*
47418632 TGTCCTG
66 TGTCTTG
* * *
47418639 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTAACAACAGAAATTAAAATTACCTC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGA---ATTTTGAA-AACAGAAATTGAAATTACCTC
* *
47418704 AGCGTGTCCTG
62 AACGTGTCTTG
* *
47418715 AGGCTCAACTCATTTCTCGTAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
47418780 TGTCTTG
66 TGTCTTG
47418787 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
47418852 TGTCTTG
66 TGTCTTG
47418859 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
47418924 TGTCTTG
66 TGTCTTG
47418931 AGGCTCAACTCATTTCTCGC-ATATGAGTTG-A-TTTGAAAA
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA
47418970 GAAATTAAAT
Statistics
Matches: 1415, Mismatches: 53, Indels: 36
0.94 0.04 0.02
Matches are distributed among these distances:
69 84 0.06
70 10 0.01
71 80 0.06
72 862 0.61
73 226 0.16
74 33 0.02
75 63 0.04
76 57 0.04
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.32
Consensus pattern (72 bp):
AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
TGTCTTG
Found at i:47431798 original size:26 final size:27
Alignment explanation
Indices: 47431758--47431839 Score: 87
Period size: 26 Copynumber: 3.0 Consensus size: 27
47431748 TAAGAACATT
*
47431758 TTATGAAATTATATTTAATAATAATTA
1 TTATTAAATTATATTTAATAATAATTA
* *
47431785 TT-TTAAATTGTATTTAATCATATATT-
1 TTATTAAATTATATTTAATAATA-ATTA
* *
47431811 TTAATTAAAATATATTTAATATTAATTA
1 TT-ATTAAATTATATTTAATAATAATTA
47431839 T
1 T
47431840 AGTATCATAT
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
26 19 0.43
27 8 0.18
28 17 0.39
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.52
Consensus pattern (27 bp):
TTATTAAATTATATTTAATAATAATTA
Found at i:47431927 original size:16 final size:16
Alignment explanation
Indices: 47431893--47431934 Score: 52
Period size: 18 Copynumber: 2.6 Consensus size: 16
47431883 ATTATTAAGA
47431893 ATTTTATTAAATTATAT
1 ATTTTATTAAA-TATAT
47431910 ATTTTAATTAAA-ATAT
1 ATTTT-ATTAAATATAT
47431926 A-TTTATTAA
1 ATTTTATTAA
47431935 TATTTATGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 5 0.21
15 3 0.12
16 5 0.21
17 5 0.21
18 6 0.25
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
ATTTTATTAAATATAT
Found at i:47431935 original size:18 final size:18
Alignment explanation
Indices: 47431893--47431927 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
47431883 ATTATTAAGA
*
47431893 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAAATATAT
47431910 ATTTTAATTAAAATATAT
1 ATTTTAATTAAAATATAT
47431928 TTATTAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
ATTTTAATTAAAATATAT
Found at i:47432014 original size:120 final size:119
Alignment explanation
Indices: 47431840--47432064 Score: 387
Period size: 120 Copynumber: 1.9 Consensus size: 119
47431830 TATTAATTAT
*
47431840 AGTATCATATATTATGATTTGAATAAATTATATAAGAATATGAATTATTAAGAATTTTATTAAAT
1 AGTATCATATATTATGATTTGAATAAATTATATAAGAATATGAATTATCAAGAATTTTATTAAAT
* * *
47431905 TATATATTTTAATTAAAATATATTTATTAATATTTATGTTAATTTATATTTTAC
66 TATATATTTTAATTAAAATATATTTAATAAAAATTATGTTAATTTATATTTTAC
* *
47431959 AGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATCAAGAATTTTATTAAA
1 AGTATCATATATTATGATTTGAATAAATT-ATATAAGAATATGAATTATCAAGAATTTTATTAAA
47432024 TTATATATTTTAATTAAAATATATTTAATAAAAATTATGTT
65 TTATATATTTTAATTAAAATATATTTAATAAAAATTATGTT
47432065 TAAATATGAT
Statistics
Matches: 99, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
119 28 0.28
120 71 0.72
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (119 bp):
AGTATCATATATTATGATTTGAATAAATTATATAAGAATATGAATTATCAAGAATTTTATTAAAT
TATATATTTTAATTAAAATATATTTAATAAAAATTATGTTAATTTATATTTTAC
Found at i:47432041 original size:18 final size:17
Alignment explanation
Indices: 47432013--47432047 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
47432003 ATTATCAAGA
*
47432013 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
47432030 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
47432048 TTAATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:47432047 original size:16 final size:16
Alignment explanation
Indices: 47432013--47432067 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
47432003 ATTATCAAGA
47432013 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
47432030 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
47432046 A-TTTAATAAAAAT-T
1 ATTTTAATTAAAATAT
47432060 ATGTTTAA
1 AT-TTTAA
47432068 ATATGATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 2 0.06
15 11 0.32
16 10 0.29
17 5 0.15
18 6 0.18
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:47432187 original size:156 final size:157
Alignment explanation
Indices: 47432001--47432316 Score: 580
Period size: 156 Copynumber: 2.0 Consensus size: 157
47431991 ATAAGAATAT
47432001 TAATTATCAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAAAAATTATGTTT
1 TAATTATCAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAAAAATTATGTTT
*
47432066 AAATATGATTAAATTATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
47432131 TAATCATTTACAAAAACAAATTTATGC
131 TAATCATTTACAAAAACAAATTTATGC
* *
47432158 TAATTAT-AAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTGTGTTT
1 TAATTATCAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAAAAATTATGTTT
47432222 AAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
* *
47432287 TAATCATTTACCAAAACAATTTTATGC
131 TAATCATTTACAAAAACAAATTTATGC
47432314 TAA
1 TAA
47432317 GGGTATTCTA
Statistics
Matches: 154, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
156 147 0.95
157 7 0.05
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.42
Consensus pattern (157 bp):
TAATTATCAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAAAAATTATGTTT
AAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
TAATCATTTACAAAAACAAATTTATGC
Found at i:47432197 original size:18 final size:17
Alignment explanation
Indices: 47432169--47432203 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
47432159 AATTATAAGA
*
47432169 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
47432186 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
47432204 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:47432460 original size:16 final size:16
Alignment explanation
Indices: 47432439--47432474 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
47432429 GATTAACTAT
47432439 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
47432455 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
47432471 TACA
1 TACA
47432475 GCGAACCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.36, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:47455759 original size:23 final size:23
Alignment explanation
Indices: 47455730--47455851 Score: 174
Period size: 23 Copynumber: 5.3 Consensus size: 23
47455720 ATAAGTGCCA
47455730 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
47455753 CATTGATATGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
47455776 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
47455799 CACTGATATGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
47455822 CATTGA-ATTGTAGTCGAAGCTAC
1 CACTGATA-TGTAGCCGAAGCTAC
47455845 CACTGAT
1 CACTGAT
47455852 CAATAACATT
Statistics
Matches: 86, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
22 1 0.01
23 85 0.99
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.25
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:47455797 original size:46 final size:46
Alignment explanation
Indices: 47455730--47455851 Score: 199
Period size: 46 Copynumber: 2.7 Consensus size: 46
47455720 ATAAGTGCCA
* *
47455730 CACTGATATGTAGCCGAAGCTACCATTGATATGTAGCCGTAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGATATGTAGCCGTAGCTAC
47455776 CACTGAAATGTAGCCGAAGCTACCACTGATATGTAGCCGTAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGATATGTAGCCGTAGCTAC
* * *
47455822 CATTGAATTGTAGTCGAAGCTACCACTGAT
1 CACTGAAATGTAGCCGAAGCTACCACTGAT
47455852 CAATAACATT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 71 1.00
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.25
Consensus pattern (46 bp):
CACTGAAATGTAGCCGAAGCTACCACTGATATGTAGCCGTAGCTAC
Found at i:47456940 original size:21 final size:21
Alignment explanation
Indices: 47456916--47456955 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
47456906 TTAGTTTTTT
47456916 TTTTAAAAAACCTCTTAAATG
1 TTTTAAAAAACCTCTTAAATG
* *
47456937 TTTTAAATAACTTCTTAAA
1 TTTTAAAAAACCTCTTAAA
47456956 AGCTTTTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.42, C:0.12, G:0.03, T:0.42
Consensus pattern (21 bp):
TTTTAAAAAACCTCTTAAATG
Found at i:47456940 original size:22 final size:23
Alignment explanation
Indices: 47456915--47456965 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 23
47456905 CTTAGTTTTT
*
47456915 TTTTTAAAAAACCTCTTAAATG-
1 TTTTTAAAAAACCTCTTAAAAGC
* *
47456937 -TTTTAAATAACTTCTTAAAAGC
1 TTTTTAAAAAACCTCTTAAAAGC
47456959 TTTTTAA
1 TTTTTAA
47456966 TGTTTTAAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
21 18 0.75
23 6 0.25
ACGTcount: A:0.39, C:0.12, G:0.04, T:0.45
Consensus pattern (23 bp):
TTTTTAAAAAACCTCTTAAAAGC
Found at i:47459970 original size:37 final size:40
Alignment explanation
Indices: 47459874--47459972 Score: 114
Period size: 40 Copynumber: 2.5 Consensus size: 40
47459864 AACACACCAG
**
47459874 TTTGGCACCCAATGCCTCATCGGATAATTCGAAGTAATAA
1 TTTGGCACCCAATGCCTCATCGGATAAACCGAAGTAATAA
* ** *
47459914 TTTGACACCCAATATCTCATCGGTTAAACCGAAGT-A-AA
1 TTTGGCACCCAATGCCTCATCGGATAAACCGAAGTAATAA
*
47459952 -TTGGCACCCAGTGCCTCATCG
1 TTTGGCACCCAATGCCTCATCG
47459973 AATTAATCTG
Statistics
Matches: 49, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
37 17 0.35
38 2 0.04
39 1 0.02
40 29 0.59
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (40 bp):
TTTGGCACCCAATGCCTCATCGGATAAACCGAAGTAATAA
Found at i:47460170 original size:19 final size:19
Alignment explanation
Indices: 47460145--47460197 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
47460135 CAATTAAAAT
47460145 AATCAATATATTCAATATA
1 AATCAATATATTCAATATA
* *
47460164 TATCAAT-TAAATCAATATA
1 AATCAATAT-ATTCAATATA
*
47460183 AATTCAATAAATTCA
1 AA-TCAATATATTCA
47460198 TCACACACTA
Statistics
Matches: 26, Mismatches: 5, Indels: 5
0.72 0.14 0.14
Matches are distributed among these distances:
18 1 0.04
19 16 0.62
20 9 0.35
ACGTcount: A:0.53, C:0.11, G:0.00, T:0.36
Consensus pattern (19 bp):
AATCAATATATTCAATATA
Found at i:47460897 original size:11 final size:10
Alignment explanation
Indices: 47460883--47460948 Score: 62
Period size: 10 Copynumber: 6.3 Consensus size: 10
47460873 TTCTCCTTCA
47460883 TTTCTTTCCTT
1 TTTCTTT-CTT
*
47460894 TTTCTTTTTT
1 TTTCTTTCTT
47460904 TTTCTTT-TT
1 TTTCTTTCTT
* *
47460913 TTTATTTCTG
1 TTTCTTTCTT
47460923 TTTCGTTTCTAT
1 TTTC-TTTCT-T
47460935 CTTTCTTTCTT
1 -TTTCTTTCTT
47460946 TTT
1 TTT
47460949 TATTTGTTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
9 8 0.17
10 16 0.35
11 13 0.28
12 5 0.11
13 4 0.09
ACGTcount: A:0.03, C:0.17, G:0.03, T:0.77
Consensus pattern (10 bp):
TTTCTTTCTT
Found at i:47460986 original size:13 final size:13
Alignment explanation
Indices: 47460970--47460994 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47460960 TTATACATTA
47460970 TTATTTTATTATT
1 TTATTTTATTATT
47460983 TTATTTTATTAT
1 TTATTTTATTAT
47460995 AATATAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
TTATTTTATTATT
Found at i:47465362 original size:99 final size:99
Alignment explanation
Indices: 47465191--47465775 Score: 929
Period size: 99 Copynumber: 5.9 Consensus size: 99
47465181 CGGGTTGAAA
*
47465191 AATTAAAAGATTGAAGCCACAACGGCGGATCTTACTTCATTAGCAGTGCAGCGGAACAGATTGAA
1 AATTAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAA
47465256 GCTACGACGGCGGATCTGGTTTCCCTGATATTGC
66 GCTACGACGGCGGATCTGGTTTCCCTGATATTGC
* *
47465290 AATTAAAAGATTGAAGCCACAACGGCGGATCTTACTTTCTTAGCAGTACAGCGGAACAGATTGAA
1 AATTAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAA
47465355 GCTACGACGGCGGATCTGGTTTCCCTGATATTGC
66 GCTACGACGGCGGATCTGGTTTCCCTGATATTGC
* * *
47465389 AATTAAAAGATTGAAGCCACAAAGACGGATCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAA
1 AATTAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAA
* * *
47465454 GCTACGACGGCAGATCCGGTTTCTCTGATATTGC
66 GCTACGACGGCGGATCTGGTTTCCCTGATATTGC
* *
47465488 AATTAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTACAGCGGAATAGATTGAA
1 AATTAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAA
* * * *
47465553 TCTACGACGGCAGATCTAGTTACCCTGATATTGC
66 GCTACGACGGCGGATCTGGTTTCCCTGATATTGC
*
47465587 AATTAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTAAA
1 AATTAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAA
* *
47465652 GCTATGACGGCGGATCTGGTTTCCCTGATATTGT
66 GCTACGACGGCGGATCTGGTTTCCCTGATATTGC
* * * * * *
47465686 AATTAAAAAGATTAAAGCCACAACGGCGGATCTTACTTCCCT-GACGGTGCGGTGGAACAGGTTG
1 AATT-AAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAG-CAGTGCAGCGGAACAGATTG
47465750 AAGCTACGACGGCGGATCTGGTTTCC
64 AAGCTACGACGGCGGATCTGGTTTCC
47465776 TCGACATTGC
Statistics
Matches: 446, Mismatches: 38, Indels: 3
0.92 0.08 0.01
Matches are distributed among these distances:
99 371 0.83
100 75 0.17
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (99 bp):
AATTAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAA
GCTACGACGGCGGATCTGGTTTCCCTGATATTGC
Found at i:47465801 original size:50 final size:51
Alignment explanation
Indices: 47465244--47465802 Score: 205
Period size: 50 Copynumber: 11.3 Consensus size: 51
47465234 CAGTGCAGCG
* * *
47465244 GAACAGATTGAAGCTACGACGGCGGATCTGGTTTCC-CTGATATTGCAATT
1 GAACAAATTGAAGCTACGACGGCGGATCTGGTTTCCTCTGACATTGCAGTT
* * ** * * **
47465294 -AA-AAGATTGAAGCCACAACGGCGGATCTTACTTT-CT-T-AGCAGTACAGCG
1 GAACAA-ATTGAAGCTACGACGGCGGATC-TGGTTTCCTCTGA-CATTGCAGTT
* * *
47465343 GAACAGATTGAAGCTACGACGGCGGATCTGGTTTCC-CTGATATTGCAATT
1 GAACAAATTGAAGCTACGACGGCGGATCTGGTTTCCTCTGACATTGCAGTT
* * * * *** * *
47465393 -AA-AAGATTGAAGCCACAAAGACGGATCTTACTTCCT-T-AGCAGTGCAGTG
1 GAACAA-ATTGAAGCTACGACGGCGGATCTGGTTTCCTCTGA-CATTGCAGTT
* * * * *
47465442 GAACAGATTGAAGCTACGACGGCAGATCCGGTTT-CTCTGATATTGCAATT
1 GAACAAATTGAAGCTACGACGGCGGATCTGGTTTCCTCTGACATTGCAGTT
* * *** * * **
47465492 -AA-AAGATTGAAGCCACAACGGCGGATCTTACTTCCT-T-AGCAGTACAGCG
1 GAACAA-ATTGAAGCTACGACGGCGGATCTGGTTTCCTCTGA-CATTGCAGTT
* * * * * * * *
47465541 GAATAGATTGAATCTACGACGGCAGATCTAGTTACC-CTGATATTGCAATT
1 GAACAAATTGAAGCTACGACGGCGGATCTGGTTTCCTCTGACATTGCAGTT
* * *** * **
47465591 -AA-AAGATTGAAGCCACAACGGCGGATCTTACTTCCT-T-AGCAGTGCAGCG
1 GAACAA-ATTGAAGCTACGACGGCGGATCTGGTTTCCTCTGA-CATTGCAGTT
* * * * * *
47465640 GAACAGATTAAAGCTATGACGGCGGATCTGGTTTCC-CTGATATTGTAATT
1 GAACAAATTGAAGCTACGACGGCGGATCTGGTTTCCTCTGACATTGCAGTT
* * * * *** ** * *
47465690 -AAAAAGATTAAAGCCACAACGGCGGATCTTACTTCC-CTGACGGTGCGGTG
1 GAACAA-ATTGAAGCTACGACGGCGGATCTGGTTTCCTCTGACATTGCAGTT
**
47465740 GAACAGGTTGAAGCTACGACGGCGGATCTGGTTTCCTC-GACATTGCAGTT
1 GAACAAATTGAAGCTACGACGGCGGATCTGGTTTCCTCTGACATTGCAGTT
47465790 GAACAAATTGAAG
1 GAACAAATTGAAG
47465803 ATTACAGATC
Statistics
Matches: 341, Mismatches: 135, Indels: 66
0.63 0.25 0.12
Matches are distributed among these distances:
48 8 0.02
49 127 0.37
50 194 0.57
51 12 0.04
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (51 bp):
GAACAAATTGAAGCTACGACGGCGGATCTGGTTTCCTCTGACATTGCAGTT
Found at i:47467382 original size:15 final size:17
Alignment explanation
Indices: 47467352--47467383 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
47467342 ACCCATGCAT
47467352 TTTTTAATAGATATATG
1 TTTTTAATAGATATATG
47467369 TTTTT-ATA-ATATATG
1 TTTTTAATAGATATATG
47467384 AATATTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.56
Consensus pattern (17 bp):
TTTTTAATAGATATATG
Found at i:47471398 original size:20 final size:20
Alignment explanation
Indices: 47471373--47471432 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
47471363 TTCACCTCAT
47471373 GCATCGCATCATATGCATTA
1 GCATCGCATCATATGCATTA
47471393 GCATCGCATCATATGCATTA
1 GCATCGCATCATATGCATTA
*
47471413 GCATCGCATCATATGTATTA
1 GCATCGCATCATATGCATTA
47471433 AAGACCTTTA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (20 bp):
GCATCGCATCATATGCATTA
Found at i:47477139 original size:99 final size:99
Alignment explanation
Indices: 47476968--47477563 Score: 935
Period size: 99 Copynumber: 6.0 Consensus size: 99
47476958 CGGGTTGAAA
*
47476968 AATTAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAA
1 AATTAAAAGATTGAAGCCACAACGACGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAA
47477033 GCTACGACGGCGGATCTGGTTTCCCTGATATTGC
66 GCTACGACGGCGGATCTGGTTTCCCTGATATTGC
* *
47477067 AATTAAAAGATTGAAGCCACAACGACGGATCTTACTTTCTTAGCAGTACAGCGGAACAGATTGAA
1 AATTAAAAGATTGAAGCCACAACGACGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAA
47477132 GCTACGACGGCGGATCTGGTTTCCCTGATATTGC
66 GCTACGACGGCGGATCTGGTTTCCCTGATATTGC
* *
47477166 AATTAAAAGATTGAAGCCACAACGACGGATCTTACTTCCTTAGCAATGCAGTGGAACAGATTGAA
1 AATTAAAAGATTGAAGCCACAACGACGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAA
* *
47477231 GCTACGATGGTGGATCTGGTTTCCCTGATATTGC
66 GCTACGACGGCGGATCTGGTTTCCCTGATATTGC
* * *
47477265 AATTAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTACAGCGGAATAGATTGAA
1 AATTAAAAGATTGAAGCCACAACGACGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAA
* * * *
47477330 GTTACGACGGCAGATCTAGTTTCCCTGATATTGA
66 GCTACGACGGCGGATCTGGTTTCCCTGATATTGC
*
47477364 AATTAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAA
1 AATTAAAAGATTGAAGCCACAACGACGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAA
*
47477429 GCTACGACGGCGGATCTGGTTTCCCTGATATTGT
66 GCTACGACGGCGGATCTGGTTTCCCTGATATTGC
* * * * * *
47477463 AATTAAAAAGATTGAAGCCACAAC-AGCGGATCTTACTTTCCTGA-CGGTGCGGTGGAATAGGTT
1 AATT-AAAAGATTGAAGCCACAACGA-CGGATCTTAC-TTCCTTAGCAGTGCAGCGGAACAGATT
* *
47477526 GAAGCTACGACGGCGGATCTGGTTTCCCCGACATTGC
63 GAAGCTACGACGGCGGATCTGGTTTCCCTGATATTGC
47477563 A
1 A
47477564 GTTGAACAAA
Statistics
Matches: 458, Mismatches: 36, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
99 374 0.82
100 78 0.17
101 6 0.01
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (99 bp):
AATTAAAAGATTGAAGCCACAACGACGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAA
GCTACGACGGCGGATCTGGTTTCCCTGATATTGC
Found at i:47477578 original size:50 final size:50
Alignment explanation
Indices: 47477021--47477579 Score: 239
Period size: 50 Copynumber: 11.3 Consensus size: 50
47477011 CAGTGCAGCG
* * *
47477021 GAACAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTGATATTGCAATT
1 GAACAAATTGAAGCTACGACGGCGGATCTGGTTTCCCTGACATTGCAGTT
* * * ** * * * **
47477071 -AA-AAGATTGAAGCCACAACGACGGATCTTACTTT--CTTAGCAGTACAGCG
1 GAACAA-ATTGAAGCTACGACGGCGGATC-TGGTTTCCCTGA-CATTGCAGTT
* * *
47477120 GAACAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTGATATTGCAATT
1 GAACAAATTGAAGCTACGACGGCGGATCTGGTTTCCCTGACATTGCAGTT
* * * *** * * *
47477170 -AA-AAGATTGAAGCCACAACGACGGATCTTACTT-CCTTAGCAATGCAGTG
1 GAACAA-ATTGAAGCTACGACGGCGGATCTGGTTTCCCTGA-CATTGCAGTT
* * * * *
47477219 GAACAGATTGAAGCTACGATGGTGGATCTGGTTTCCCTGATATTGCAATT
1 GAACAAATTGAAGCTACGACGGCGGATCTGGTTTCCCTGACATTGCAGTT
* * *** * * * **
47477269 -AA-AAGATTGAAGCCACAACGGCGGATCTTACTT-CCTTAGCAGTACAGCG
1 GAACAA-ATTGAAGCTACGACGGCGGATCTGGTTTCCCTGA-CATTGCAGTT
* * * * * * * *
47477318 GAATAGATTGAAGTTACGACGGCAGATCTAGTTTCCCTGATATTGAAATT
1 GAACAAATTGAAGCTACGACGGCGGATCTGGTTTCCCTGACATTGCAGTT
* * *** * * **
47477368 -AA-AAGATTGAAGCCACAACGGCGGATCTTACTT-CCTTAGCAGTGCAGCG
1 GAACAA-ATTGAAGCTACGACGGCGGATCTGGTTTCCCTGA-CATTGCAGTT
* * * *
47477417 GAACAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTGATATTGTAATT
1 GAACAAATTGAAGCTACGACGGCGGATCTGGTTTCCCTGACATTGCAGTT
* * * * ** ** * *
47477467 -AAAAAGATTGAAGCCACAACAGCGGATCTTACTTT-CCTGACGGTGCGGTG
1 GAACAA-ATTGAAGCTACGACGGCGGATC-TGGTTTCCCTGACATTGCAGTT
* ** *
47477517 GAATAGGTTGAAGCTACGACGGCGGATCTGGTTTCCCCGACATTGCAGTT
1 GAACAAATTGAAGCTACGACGGCGGATCTGGTTTCCCTGACATTGCAGTT
47477567 GAACAAATTGAAG
1 GAACAAATTGAAG
47477580 ATTACAGATC
Statistics
Matches: 342, Mismatches: 141, Indels: 52
0.64 0.26 0.10
Matches are distributed among these distances:
48 19 0.06
49 120 0.35
50 177 0.52
51 26 0.08
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.26
Consensus pattern (50 bp):
GAACAAATTGAAGCTACGACGGCGGATCTGGTTTCCCTGACATTGCAGTT
Found at i:47478353 original size:10 final size:11
Alignment explanation
Indices: 47478335--47478368 Score: 52
Period size: 10 Copynumber: 3.1 Consensus size: 11
47478325 TTTCTTTTCG
47478335 TTATTTTCTTT
1 TTATTTTCTTT
47478346 TT-TTTTCTTT
1 TTATTTTCTTT
47478356 TTATTTTGCTTT
1 TTATTTT-CTTT
47478368 T
1 T
47478369 CTAAATAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 10 0.48
11 6 0.29
12 5 0.24
ACGTcount: A:0.06, C:0.09, G:0.03, T:0.82
Consensus pattern (11 bp):
TTATTTTCTTT
Found at i:47479246 original size:15 final size:17
Alignment explanation
Indices: 47479216--47479247 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
47479206 CCCATGCATT
47479216 TTTTTAATAGATATATG
1 TTTTTAATAGATATATG
47479233 TTTTT-ATA-ATATATG
1 TTTTTAATAGATATATG
47479248 AATATTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.56
Consensus pattern (17 bp):
TTTTTAATAGATATATG
Found at i:47480757 original size:36 final size:36
Alignment explanation
Indices: 47480717--47480788 Score: 92
Period size: 36 Copynumber: 2.0 Consensus size: 36
47480707 GAATATTGAC
* *
47480717 TTGAAAATGGAAAAGT-AAATTTGAATTGAATTGTGA
1 TTGAAAATGAAAAAGTGAAA-TTGAATTGAAATGTGA
**
47480753 TTGAAGGTGAAAAAGTGAAATTGAATTGAAATGTGA
1 TTGAAAATGAAAAAGTGAAATTGAATTGAAATGTGA
47480789 ATTTGAGAAG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
36 28 0.90
37 3 0.10
ACGTcount: A:0.44, C:0.00, G:0.25, T:0.31
Consensus pattern (36 bp):
TTGAAAATGAAAAAGTGAAATTGAATTGAAATGTGA
Found at i:47481016 original size:23 final size:22
Alignment explanation
Indices: 47480988--47481097 Score: 118
Period size: 23 Copynumber: 5.0 Consensus size: 22
47480978 CGGCTTTGCC
47480988 AATCAGGCACTTTATGTGTCGT
1 AATCAGGCACTTTATGTGTCGT
47481010 ACATCAGGCACTTTATGTGTCGT
1 A-ATCAGGCACTTTATGTGTCGT
* * *
47481033 ATCTCAGGCACTGTATGTGTTGT
1 A-ATCAGGCACTTTATGTGTCGT
* **
47481056 -ATCAGGCACCTCGTGTGTCGT
1 AATCAGGCACTTTATGTGTCGT
*
47481077 -TTCAGGCAC-TTATGTGTCGT
1 AATCAGGCACTTTATGTGTCGT
47481097 A
1 A
47481098 TACTGATCAG
Statistics
Matches: 73, Mismatches: 13, Indels: 5
0.80 0.14 0.05
Matches are distributed among these distances:
20 9 0.12
21 23 0.32
22 1 0.01
23 40 0.55
ACGTcount: A:0.19, C:0.21, G:0.25, T:0.35
Consensus pattern (22 bp):
AATCAGGCACTTTATGTGTCGT
Found at i:47481043 original size:46 final size:43
Alignment explanation
Indices: 47480990--47481097 Score: 130
Period size: 44 Copynumber: 2.5 Consensus size: 43
47480980 GCTTTGCCAA
* *
47480990 TCAGGCACTTTATGTGTCGTACATCAGGCACTTTATGTGTCGTAT
1 TCAGGCACTTTATGTGTCGTA-ATCAGGCACCTCATGTGTCGT-T
* * *
47481035 CTCAGGCACTGTATGTGTTGT-ATCAGGCACCTCGTGTGTCGTT
1 -TCAGGCACTTTATGTGTCGTAATCAGGCACCTCATGTGTCGTT
47481078 TCAGGCAC-TTATGTGTCGTA
1 TCAGGCACTTTATGTGTCGTA
47481098 TACTGATCAG
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
41 9 0.17
42 8 0.15
43 1 0.02
44 18 0.33
46 18 0.33
ACGTcount: A:0.18, C:0.21, G:0.25, T:0.36
Consensus pattern (43 bp):
TCAGGCACTTTATGTGTCGTAATCAGGCACCTCATGTGTCGTT
Found at i:47481285 original size:6 final size:6
Alignment explanation
Indices: 47481274--47481304 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
47481264 AAATTTGTGG
*
47481274 ATTGAA ATTGAA ATTGAA ATTGAA AATGAA A
1 ATTGAA ATTGAA ATTGAA ATTGAA ATTGAA A
47481305 GGCATGAACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.55, C:0.00, G:0.16, T:0.29
Consensus pattern (6 bp):
ATTGAA
Found at i:47482177 original size:34 final size:34
Alignment explanation
Indices: 47482132--47482200 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
47482122 AGGGGGTGTT
* *
47482132 ACACGCTAGTGCTCATAAGAGCTAATCCCCTGAA
1 ACACGCCAGTGCTCATAAGAGCTAATCCCCCGAA
47482166 ACACGCCAGTGCTCATAAGAGCTAATCCCCCGAA
1 ACACGCCAGTGCTCATAAGAGCTAATCCCCCGAA
47482200 A
1 A
47482201 TAAGCTAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.33, C:0.32, G:0.17, T:0.17
Consensus pattern (34 bp):
ACACGCCAGTGCTCATAAGAGCTAATCCCCCGAA
Found at i:47484158 original size:18 final size:17
Alignment explanation
Indices: 47484125--47484163 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
47484115 TTGTATAAAT
47484125 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
47484143 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
47484160 TGTG
1 TGTG
47484164 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:47484416 original size:23 final size:23
Alignment explanation
Indices: 47484389--47484486 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
47484379 AGTGTTATTG
47484389 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
47484412 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
47484435 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
47484457 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
47484480 ATCAGTG
1 ATCAGTG
47484487 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:47484455 original size:45 final size:45
Alignment explanation
Indices: 47484391--47484479 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
47484381 TGTTATTGAT
* *
47484391 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
47484436 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
47484480 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:47488263 original size:57 final size:58
Alignment explanation
Indices: 47488161--47488276 Score: 180
Period size: 57 Copynumber: 2.0 Consensus size: 58
47488151 AACAATTTCT
* *
47488161 ACTTATCGTAATTATACTAAATCATATAATATATACTCTATAGCAAAATTTTAACATA
1 ACTTATCGTAATTATACAAAATCATATAATATATACTCTAGAGCAAAATTTTAACATA
* * *
47488219 ACTTATGGTAATTATA-AAAATTATATAATATATATTCTAGAGCAAAATTTTAACATA
1 ACTTATCGTAATTATACAAAATCATATAATATATACTCTAGAGCAAAATTTTAACATA
47488276 A
1 A
47488277 ACAAAGAACT
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
57 38 0.72
58 15 0.28
ACGTcount: A:0.47, C:0.10, G:0.05, T:0.38
Consensus pattern (58 bp):
ACTTATCGTAATTATACAAAATCATATAATATATACTCTAGAGCAAAATTTTAACATA
Found at i:47490467 original size:6 final size:6
Alignment explanation
Indices: 47490456--47490482 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
47490446 GAAGGCGAGA
47490456 AGAAGG AGAAGG AGAAGG AGAAGG AGA
1 AGAAGG AGAAGG AGAAGG AGAAGG AGA
47490483 GGTCGTCGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (6 bp):
AGAAGG
Found at i:47495340 original size:27 final size:25
Alignment explanation
Indices: 47495291--47495342 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 25
47495281 TTTTGAATTC
*
47495291 GTGTTATATGTAAAAAATTATTTTT
1 GTGTTATATGTAAAAAAATATTTTT
47495316 GTGTTATATGTAAAAAAAAATATTTTT
1 GTGTTATATGT--AAAAAAATATTTTT
47495343 ATTAAGATGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 11 0.46
27 13 0.54
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (25 bp):
GTGTTATATGTAAAAAAATATTTTT
Found at i:47495454 original size:26 final size:27
Alignment explanation
Indices: 47495405--47495459 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
47495395 AATGATTTAA
*
47495405 AAATAAATAAAAATTATCAGAAAG-AT
1 AAATAAATAAAAATTATCAAAAAGCAT
** *
47495431 AAATAAATTCAAATTATTAAAAAGCAT
1 AAATAAATAAAAATTATCAAAAAGCAT
47495458 AA
1 AA
47495460 GTTATTAGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.25
Consensus pattern (27 bp):
AAATAAATAAAAATTATCAAAAAGCAT
Found at i:47497075 original size:19 final size:18
Alignment explanation
Indices: 47497036--47497079 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
47497026 GAAAAACAAA
*
47497036 TTTATAGAAATAAAATGTT
1 TTTATAAAAATAAAA-GTT
47497055 TTTATAAAAATAATAA-TT
1 TTTATAAAAATAA-AAGTT
47497073 TTTATAA
1 TTTATAA
47497080 TTTTATAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 9 0.39
19 12 0.52
20 2 0.09
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (18 bp):
TTTATAAAAATAAAAGTT
Found at i:47497341 original size:26 final size:31
Alignment explanation
Indices: 47497294--47497364 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 31
47497284 TAAAAGAATT
* *
47497294 CAAACATAGGTA-TGAATTTG-A-ATA-AAA
1 CAAACATAGGTACCGAATATGAACATAGAAA
47497321 -AAACATAGGTACCGAA-ATGAACATAGAAA
1 CAAACATAGGTACCGAATATGAACATAGAAA
47497350 TCAAACATAGGTACC
1 -CAAACATAGGTACC
47497365 AAAAAAGTAC
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
26 13 0.36
27 4 0.11
28 3 0.08
29 3 0.08
31 13 0.36
ACGTcount: A:0.51, C:0.14, G:0.15, T:0.20
Consensus pattern (31 bp):
CAAACATAGGTACCGAATATGAACATAGAAA
Found at i:47499181 original size:4 final size:4
Alignment explanation
Indices: 47499172--47499204 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
47499162 AGAAGAACCC
*
47499172 CATA CATA CATA CGTA CATA CATA CATA CATA C
1 CATA CATA CATA CATA CATA CATA CATA CATA C
47499205 CTTCTCTTCC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.45, C:0.27, G:0.03, T:0.24
Consensus pattern (4 bp):
CATA
Found at i:47504408 original size:24 final size:24
Alignment explanation
Indices: 47504376--47504426 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
47504366 GTGAGTTTTA
47504376 AATTCTGACCTAAATTAATCTGCC
1 AATTCTGACCTAAATTAATCTGCC
47504400 AATTCTGACCTAAATTAATCTGCC
1 AATTCTGACCTAAATTAATCTGCC
47504424 AAT
1 AAT
47504427 GTTTTTCCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.33
Consensus pattern (24 bp):
AATTCTGACCTAAATTAATCTGCC
Found at i:47507821 original size:17 final size:17
Alignment explanation
Indices: 47507796--47507829 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
47507786 ATAATTTTAA
*
47507796 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
47507813 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
47507830 TTAATATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:47507831 original size:15 final size:16
Alignment explanation
Indices: 47507796--47507834 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
47507786 ATAATTTTAA
*
47507796 ATTTTATTAAATCATAT
1 ATTTAATTAAATCA-AT
47507813 ATTTAATTAAATC-AT
1 ATTTAATTAAATCAAT
47507828 ATTTAAT
1 ATTTAAT
47507835 ATTAATTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.43
17 12 0.57
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (16 bp):
ATTTAATTAAATCAAT
Found at i:47507838 original size:17 final size:18
Alignment explanation
Indices: 47507800--47507839 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
47507790 TTTTAAATTT
*
47507800 TATTAAATCATATATTTA
1 TATTAAATCATATATTAA
47507818 -ATTAAATCATAT-TTAA
1 TATTAAATCATATATTAA
47507834 TATTAA
1 TATTAA
47507840 TTATTTGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 3 0.15
17 17 0.85
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (18 bp):
TATTAAATCATATATTAA
Found at i:47507954 original size:15 final size:15
Alignment explanation
Indices: 47507919--47507970 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
47507909 TTAAGAATTT
*
47507919 TATTAAATTAT-ATA
1 TATTTAATTATAATA
47507933 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
47507947 TATTTAATAATAAT-
1 TATTTAATTATAATA
47507961 TATGTTAATT
1 TAT-TTAATT
47507971 TATATTTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:47507961 original size:120 final size:120
Alignment explanation
Indices: 47507795--47508086 Score: 459
Period size: 120 Copynumber: 2.4 Consensus size: 120
47507785 AATAATTTTA
* * *
47507795 AATTTTATTAAATCATATA-TTTAATTA-AATCATATTTAATATTAATTAT-TTGAAATTT-TCT
1 AATTTTATTAAATTATATATTTTAATTATAAT-ATATTTAATAATAATTATGTT--AATTTATAT
* *
47507856 TTTATAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAAT-TTTATTTATTAAG
63 TTTACAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAATATTAATTT-TTAAG
47507914 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
*
47507979 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTTTTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAATATTAATTTTTAAG
47508034 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
47508087 TAAATATGAT
Statistics
Matches: 162, Mismatches: 6, Indels: 9
0.92 0.03 0.05
Matches are distributed among these distances:
119 23 0.14
120 128 0.79
121 11 0.07
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAATATTAATTTTTAAG
Found at i:47508051 original size:59 final size:59
Alignment explanation
Indices: 47507868--47508051 Score: 148
Period size: 59 Copynumber: 3.1 Consensus size: 59
47507858 TATAGTATCA
* *
47507868 TATATTATGATTTGAGTAAATTCATAGAAGAATTTTATTTATTAAGAATTTTATTAAAT
1 TATATTATGATTTGAGTAAATTCATATAAGAATATTATTTATTAAGAATTTTATTAAAT
* * * * * * * *
47507927 TATA-TAT--TTTAATTATAATAT-ATTTAATAATAATTATGTTAATTTA-TATTTTA-CAGTAT
1 TATATTATGATTTGAGTA-AAT-TCATATAAGAAT-ATTAT-TT-ATTAAGAATTTTATTA-AAT
47507986 CATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTT-TTAAGAATTTTATTAAAT
1 --TATATTATGATTTGAGTAAATTCATATAAGAATATT-ATTTATTAAGAATTTTATTAAAT
47508047 TATAT
1 TATAT
47508052 ATTTTAATTA
Statistics
Matches: 92, Mismatches: 18, Indels: 30
0.66 0.13 0.21
Matches are distributed among these distances:
56 6 0.07
57 10 0.11
58 9 0.10
59 19 0.21
60 7 0.08
61 12 0.13
62 10 0.11
63 13 0.14
64 6 0.07
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.49
Consensus pattern (59 bp):
TATATTATGATTTGAGTAAATTCATATAAGAATATTATTTATTAAGAATTTTATTAAAT
Found at i:47508069 original size:16 final size:16
Alignment explanation
Indices: 47508048--47508089 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
47508038 TTATTAAATT
*
47508048 ATATATTTTAATTATA
1 ATATATTTTAATAATA
47508064 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
47508079 AT-TATGTTTAA
1 ATATAT-TTTAA
47508090 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:47508074 original size:15 final size:15
Alignment explanation
Indices: 47508039--47508080 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
47508029 TTAAGAATTT
*
47508039 TATTAAATTAT-ATA
1 TATTTAATTATAATA
47508053 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
47508067 TATTTAATAATAAT
1 TATTTAATTATAAT
47508081 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:47508200 original size:154 final size:156
Alignment explanation
Indices: 47508023--47508336 Score: 569
Period size: 154 Copynumber: 2.0 Consensus size: 156
47508013 ATAAGAATAT
* *
47508023 TAATTTTTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
47508088 AAATATGATTAAATTATTTATTATTGAT-AT-TAATCTTATTAAAATTTAAATAACAATAACAAT
66 AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAACAAT
47508151 AATAATTTACCAAAACAAATTTATGC
131 AATAATTTACCAAAACAAATTTATGC
47508177 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
47508242 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAATTATTTATTATTGATAAT-ATAATCTTATTAAAATTTAAATAACAATAACAA
* *
47508307 TAATCATTTACCAAAACAAATTTCTGC
130 TAATAATTTACCAAAACAAATTTATGC
47508334 TAA
1 TAA
47508337 GGGTATTCTA
Statistics
Matches: 153, Mismatches: 4, Indels: 3
0.96 0.03 0.02
Matches are distributed among these distances:
154 91 0.59
155 2 0.01
157 60 0.39
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (156 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAACAAT
AATAATTTACCAAAACAAATTTATGC
Found at i:47508217 original size:18 final size:17
Alignment explanation
Indices: 47508189--47508223 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
47508179 ATTATTAAGA
*
47508189 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
47508206 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
47508224 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:47508257 original size:75 final size:75
Alignment explanation
Indices: 47508024--47508259 Score: 203
Period size: 75 Copynumber: 3.1 Consensus size: 75
47508014 TAAGAATATT
* *
47508024 AATTTTTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTA
1 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
47508089 AATATGATTA
66 AATATGATTA
* ** * * * * * * *
47508099 AATTATTTATTATTGATATTAATCTTATTAAAATTTAAATAACAATA-A--CAATAATAATT-TA
1 AATTATTAAGAATT-TTATTAA-ATTA-TATATTTTAATTAA-AATATATTTAATAATAATTATG
*** * *
47508160 CCAAAACA-AATTTA
62 TTTAAATATGA-TTA
47508174 TGCTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATG
1 ----AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATG
47508239 TTTAAATATGATTA
62 TTTAAATATGATTA
47508253 AATTATT
1 AATTATT
47508260 TATTATTGAT
Statistics
Matches: 115, Mismatches: 32, Indels: 28
0.66 0.18 0.16
Matches are distributed among these distances:
74 1 0.01
75 29 0.25
76 28 0.24
77 6 0.05
78 27 0.23
79 23 0.20
80 1 0.01
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.47
Consensus pattern (75 bp):
AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
AATATGATTA
Found at i:47508477 original size:16 final size:16
Alignment explanation
Indices: 47508456--47508494 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
47508446 TTGATTTGCT
*
47508456 ATTACACAGCTTTTCC
1 ATTACACAGCTATTCC
**
47508472 ATTACACCTCTATTCC
1 ATTACACAGCTATTCC
47508488 ATTACAC
1 ATTACAC
47508495 CTCTAATCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.28, C:0.33, G:0.03, T:0.36
Consensus pattern (16 bp):
ATTACACAGCTATTCC
Found at i:47508495 original size:16 final size:16
Alignment explanation
Indices: 47508469--47508525 Score: 87
Period size: 16 Copynumber: 3.6 Consensus size: 16
47508459 ACACAGCTTT
* *
47508469 TCCATTACACCTCTAT
1 TCCAATACACCTCTAA
*
47508485 TCCATTACACCTCTAA
1 TCCAATACACCTCTAA
47508501 TCCAATACACCTCTAA
1 TCCAATACACCTCTAA
47508517 TCCAATACA
1 TCCAATACA
47508526 GCGAACCAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.33, C:0.37, G:0.00, T:0.30
Consensus pattern (16 bp):
TCCAATACACCTCTAA
Found at i:47515553 original size:17 final size:18
Alignment explanation
Indices: 47515533--47515574 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
47515523 AATAAAATCA
47515533 TATTTATA-GAAAATATT
1 TATTTATACGAAAATATT
*
47515550 TATTTA-ACTAAAATATT
1 TATTTATACGAAAATATT
*
47515567 TAATTATA
1 TATTTATA
47515575 AAAGAACTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 1 0.05
17 19 0.90
18 1 0.05
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (18 bp):
TATTTATACGAAAATATT
Found at i:47522780 original size:13 final size:15
Alignment explanation
Indices: 47522746--47522828 Score: 73
Period size: 15 Copynumber: 5.6 Consensus size: 15
47522736 TGAAAATGAT
47522746 ATAATAAGTATAATAA
1 ATAAT-AGTATAATAA
*
47522762 ATAATAGTGTAA-AA
1 ATAATAGTATAATAA
47522776 A-AATAGTATAATAA
1 ATAATAGTATAATAA
* *
47522790 ATAATAGGAAAAT-A
1 ATAATAGTATAATAA
* *
47522804 ATAAAAATGATAATAA
1 ATAATAGT-ATAATAA
*
47522820 AAAATAGTA
1 ATAATAGTA
47522829 ACATTAGATT
Statistics
Matches: 52, Mismatches: 11, Indels: 9
0.72 0.15 0.12
Matches are distributed among these distances:
13 9 0.17
14 12 0.23
15 20 0.38
16 11 0.21
ACGTcount: A:0.64, C:0.00, G:0.10, T:0.27
Consensus pattern (15 bp):
ATAATAGTATAATAA
Found at i:47524050 original size:8 final size:8
Alignment explanation
Indices: 47524037--47524078 Score: 57
Period size: 8 Copynumber: 4.9 Consensus size: 8
47524027 AAATAGATTT
47524037 ATAAAAAA
1 ATAAAAAA
47524045 ATAAAAAA
1 ATAAAAAA
47524053 ATAAAATAA
1 ATAAAA-AA
47524062 ATAACAAAA
1 ATAA-AAAA
47524071 ATGAAAAA
1 AT-AAAAA
47524079 TGAACAAAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
8 14 0.45
9 13 0.42
10 4 0.13
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.14
Consensus pattern (8 bp):
ATAAAAAA
Found at i:47527632 original size:20 final size:19
Alignment explanation
Indices: 47527603--47527640 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
47527593 AAGTAGTGAG
47527603 AATTTATTTTCTAAGAATA
1 AATTTATTTTCTAAGAATA
*
47527622 AATTCTATTTTCTGAGAAT
1 AATT-TATTTTCTAAGAAT
47527641 TACAATTTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.37, C:0.08, G:0.08, T:0.47
Consensus pattern (19 bp):
AATTTATTTTCTAAGAATA
Found at i:47531379 original size:21 final size:21
Alignment explanation
Indices: 47531327--47531371 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
47531317 TATGTGGGAT
47531327 AGTGTCAAAGGAAGGTGTGAC
1 AGTGTCAAAGGAAGGTGTGAC
*
47531348 AGTGTCAAAGGAATGTGTGAC
1 AGTGTCAAAGGAAGGTGTGAC
47531369 AGT
1 AGT
47531372 TGGAAAGGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.33, C:0.09, G:0.36, T:0.22
Consensus pattern (21 bp):
AGTGTCAAAGGAAGGTGTGAC
Found at i:47534920 original size:21 final size:21
Alignment explanation
Indices: 47534894--47534934 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
47534884 ATCTGCTCAA
* *
47534894 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
47534915 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
47534935 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:47539971 original size:5 final size:5
Alignment explanation
Indices: 47539961--47539991 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
47539951 TTTTTAAAGA
47539961 AATAT AATAT AATAT AATAT AATAT AATAT A
1 AATAT AATAT AATAT AATAT AATAT AATAT A
47539992 TTTATTTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
AATAT
Found at i:47540050 original size:30 final size:31
Alignment explanation
Indices: 47539986--47540047 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 31
47539976 AATATAATAT
*
47539986 AATATATTTATTTATTATTTTTAAAGGATTA
1 AATATATTTATTTATTAATTTTAAAGGATTA
*
47540017 AATATATATT-TTT-TTAATTTTAGAGG-TTA
1 AATATAT-TTATTTATTAATTTTAAAGGATTA
47540046 AA
1 AA
47540048 ATAAAGTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 5 0.18
30 11 0.39
31 10 0.36
32 2 0.07
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (31 bp):
AATATATTTATTTATTAATTTTAAAGGATTA
Found at i:47552028 original size:21 final size:20
Alignment explanation
Indices: 47551998--47552038 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
47551988 GCGCAAAACA
47551998 AAAACCATGAAAAATGTGGAC
1 AAAACCATG-AAAATGTGGAC
* *
47552019 AAAACTATGATAATGTGGAC
1 AAAACCATGAAAATGTGGAC
47552039 TGAAATTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.49, C:0.12, G:0.20, T:0.20
Consensus pattern (20 bp):
AAAACCATGAAAATGTGGAC
Found at i:47563755 original size:20 final size:20
Alignment explanation
Indices: 47563705--47563755 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 20
47563695 CATAAAACAC
*
47563705 TCAAACAATAACTTATATGT
1 TCAAACAAAAACTTATATGT
* *
47563725 TCCATAGAAAAACTTAT-TGT
1 T-CAAACAAAAACTTATATGT
47563745 TCAACACAAAA
1 TCAA-ACAAAA
47563756 GATAGGGGTT
Statistics
Matches: 24, Mismatches: 5, Indels: 4
0.73 0.15 0.12
Matches are distributed among these distances:
19 2 0.08
20 10 0.42
21 12 0.50
ACGTcount: A:0.47, C:0.18, G:0.06, T:0.29
Consensus pattern (20 bp):
TCAAACAAAAACTTATATGT
Found at i:47568515 original size:93 final size:93
Alignment explanation
Indices: 47568356--47568541 Score: 372
Period size: 93 Copynumber: 2.0 Consensus size: 93
47568346 CCGCAGGGAG
47568356 AGTGGTGAGAAATCATCTAGGGGAATGGATTATGGATTTTAATCATTCATTGGGGAAGTGTTCAA
1 AGTGGTGAGAAATCATCTAGGGGAATGGATTATGGATTTTAATCATTCATTGGGGAAGTGTTCAA
47568421 TCTTTGATGCTGAGTTATGGGGTATCTT
66 TCTTTGATGCTGAGTTATGGGGTATCTT
47568449 AGTGGTGAGAAATCATCTAGGGGAATGGATTATGGATTTTAATCATTCATTGGGGAAGTGTTCAA
1 AGTGGTGAGAAATCATCTAGGGGAATGGATTATGGATTTTAATCATTCATTGGGGAAGTGTTCAA
47568514 TCTTTGATGCTGAGTTATGGGGTATCTT
66 TCTTTGATGCTGAGTTATGGGGTATCTT
47568542 GAATGACCTG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
93 93 1.00
ACGTcount: A:0.26, C:0.09, G:0.29, T:0.37
Consensus pattern (93 bp):
AGTGGTGAGAAATCATCTAGGGGAATGGATTATGGATTTTAATCATTCATTGGGGAAGTGTTCAA
TCTTTGATGCTGAGTTATGGGGTATCTT
Found at i:47572904 original size:26 final size:25
Alignment explanation
Indices: 47572869--47572927 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
47572859 TTTATATTTA
*
47572869 TTTATGTTT-AATAATTGTAATTAATT
1 TTTATTTTTAAATAATT-TAA-TAATT
* *
47572895 TTTATTTTTAAATTATTTAATATTT
1 TTTATTTTTAAATAATTTAATAATT
47572920 TTTATTTT
1 TTTATTTT
47572928 GTATATTATC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
25 12 0.41
26 11 0.38
27 6 0.21
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (25 bp):
TTTATTTTTAAATAATTTAATAATT
Found at i:47572919 original size:24 final size:26
Alignment explanation
Indices: 47572892--47572949 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
47572882 ATTGTAATTA
47572892 ATTTTTATTTT-TAAATTAT-TTAAT
1 ATTTTTATTTTGTAAATTATCTTAAT
* *
47572916 ATTTTTTATTTTGTATATTATCTTATT
1 A-TTTTTATTTTGTAAATTATCTTAAT
47572943 ATTTTTA
1 ATTTTTA
47572950 ATATATTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 1 0.03
25 10 0.34
26 13 0.45
27 5 0.17
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.69
Consensus pattern (26 bp):
ATTTTTATTTTGTAAATTATCTTAAT
Found at i:47572935 original size:26 final size:26
Alignment explanation
Indices: 47572893--47572948 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 26
47572883 TTGTAATTAA
47572893 TTTTTATTTTTAAATTAT-TTAATAT
1 TTTTTATTTTTAAATTATCTTAATAT
* *
47572918 TTTTTATTTTGTATATTATCTTATTAT
1 TTTTTATTTT-TAAATTATCTTAATAT
47572945 TTTT
1 TTTT
47572949 AATATATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 10 0.37
26 7 0.26
27 10 0.37
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (26 bp):
TTTTTATTTTTAAATTATCTTAATAT
Found at i:47576451 original size:2 final size:2
Alignment explanation
Indices: 47576444--47576469 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
47576434 ACCTCAGAGC
47576444 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
47576470 GCAGGGTGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:47578296 original size:15 final size:15
Alignment explanation
Indices: 47578252--47578302 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
47578242 AGAAAACCCG
*
47578252 AATATCTCAAACTCAA
1 AATAT-TCAAACTTAA
*
47578268 AATAATTTAAACTTAA
1 AAT-ATTCAAACTTAA
*
47578284 AATATTCAAACTTGA
1 AATATTCAAACTTAA
47578299 AATA
1 AATA
47578303 ATCCTAACAC
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
15 14 0.47
16 14 0.47
17 2 0.07
ACGTcount: A:0.53, C:0.14, G:0.02, T:0.31
Consensus pattern (15 bp):
AATATTCAAACTTAA
Found at i:47586567 original size:28 final size:28
Alignment explanation
Indices: 47586527--47586593 Score: 116
Period size: 28 Copynumber: 2.4 Consensus size: 28
47586517 TAACGGTGAT
*
47586527 CAAGCTAGCATTTATGAATTTGCTCACA
1 CAAGCTAACATTTATGAATTTGCTCACA
*
47586555 CAAGCTAACATTTATGAATTTGCTCTCA
1 CAAGCTAACATTTATGAATTTGCTCACA
47586583 CAAGCTAACAT
1 CAAGCTAACAT
47586594 CGTATCGAGG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.34, C:0.22, G:0.12, T:0.31
Consensus pattern (28 bp):
CAAGCTAACATTTATGAATTTGCTCACA
Found at i:47587810 original size:38 final size:38
Alignment explanation
Indices: 47587754--47587826 Score: 137
Period size: 38 Copynumber: 1.9 Consensus size: 38
47587744 AGCATGCTTA
47587754 ACCAAAAATAAGTCGAATTCCTTATCGTCCACCACTGT
1 ACCAAAAATAAGTCGAATTCCTTATCGTCCACCACTGT
*
47587792 ACCAAAAATAAGTGGAATTCCTTATCGTCCACCAC
1 ACCAAAAATAAGTCGAATTCCTTATCGTCCACCAC
47587827 CGTTTGACTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.36, C:0.29, G:0.11, T:0.25
Consensus pattern (38 bp):
ACCAAAAATAAGTCGAATTCCTTATCGTCCACCACTGT
Found at i:47588145 original size:21 final size:21
Alignment explanation
Indices: 47588123--47588175 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
47588113 ATATATTTTA
47588123 AAAT-TATAGAAAA-TAGAAAT
1 AAATATATA-AAAAGTAGAAAT
47588143 AAATATATAAAAAGTAGAAA-
1 AAATATATAAAAAGTAGAAAT
*
47588163 ATATATTATAAAA
1 AAATA-TATAAAA
47588176 TATAATATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
20 12 0.41
21 17 0.59
ACGTcount: A:0.66, C:0.00, G:0.08, T:0.26
Consensus pattern (21 bp):
AAATATATAAAAAGTAGAAAT
Found at i:47589720 original size:67 final size:68
Alignment explanation
Indices: 47589637--47589784 Score: 183
Period size: 67 Copynumber: 2.2 Consensus size: 68
47589627 ATAGATTTTT
* *
47589637 TTAATTTATAAATAAATTAATAAGATAAAAAGATACATA-TTTGTAGATATAATATAATAAATT-
1 TTAATTT-T-AATAAATTAATAAGATAAAAAGATACATACTTT-TAAATATAATATAAGAAATTA
*
47589700 AAAAAG
63 AAAAAA
* * * * *
47589706 TTAATTTTAATAAATTAATAGGATAAAAAGATAGATACTTTTAAATTTAATTTAAGAATTTAAAA
1 TTAATTTTAATAAATTAATAAGATAAAAAGATACATACTTTTAAATATAATATAAGAAATTAAAA
47589771 AAA
66 AAA
47589774 TTAATTTTAAT
1 TTAATTTTAAT
47589785 TTTACATTAA
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
67 42 0.61
68 20 0.29
69 7 0.10
ACGTcount: A:0.53, C:0.01, G:0.07, T:0.39
Consensus pattern (68 bp):
TTAATTTTAATAAATTAATAAGATAAAAAGATACATACTTTTAAATATAATATAAGAAATTAAAA
AAA
Found at i:47589949 original size:20 final size:20
Alignment explanation
Indices: 47589924--47589964 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
47589914 ACTATTTTTA
*
47589924 TTAAAAA-TTAATTTTAATCC
1 TTAAAAAGTTAAATTT-ATCC
47589944 TTAAAAAGTTAAATTTATCC
1 TTAAAAAGTTAAATTTATCC
47589964 T
1 T
47589965 ACATTGACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.44, C:0.10, G:0.02, T:0.44
Consensus pattern (20 bp):
TTAAAAAGTTAAATTTATCC
Found at i:47603005 original size:12 final size:12
Alignment explanation
Indices: 47602988--47603015 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
47602978 AGGGCCGCTT
47602988 ACAACTTGGAGA
1 ACAACTTGGAGA
47603000 ACAACTTGGAGA
1 ACAACTTGGAGA
47603012 ACAA
1 ACAA
47603016 GGCGCTTAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.46, C:0.18, G:0.21, T:0.14
Consensus pattern (12 bp):
ACAACTTGGAGA
Found at i:47605628 original size:14 final size:14
Alignment explanation
Indices: 47605609--47605642 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
47605599 TTGACATTTT
*
47605609 TTCTAATGATACTA
1 TTCTAACGATACTA
47605623 TTCTAACGATACTA
1 TTCTAACGATACTA
47605637 TTCTAA
1 TTCTAA
47605643 AATGTAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.35, C:0.18, G:0.06, T:0.41
Consensus pattern (14 bp):
TTCTAACGATACTA
Found at i:47606931 original size:62 final size:62
Alignment explanation
Indices: 47606847--47606998 Score: 286
Period size: 62 Copynumber: 2.5 Consensus size: 62
47606837 ATTACAACAT
47606847 TACAACATTAAAACTTGGAACAAACTTTGTAATATAAATTTTGTTATATAAATTAAATACAC
1 TACAACATTAAAACTTGGAACAAACTTTGTAATATAAATTTTGTTATATAAATTAAATACAC
* *
47606909 TACAACATTAAAACTTGAAACAAACTTTGTAATATAAATTTTGTTATATAAATTAAATACAT
1 TACAACATTAAAACTTGGAACAAACTTTGTAATATAAATTTTGTTATATAAATTAAATACAC
47606971 TACAACATTAAAACTTGGAACAAACTTT
1 TACAACATTAAAACTTGGAACAAACTTT
47606999 AGGTCCGCGA
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 87 1.00
ACGTcount: A:0.47, C:0.12, G:0.06, T:0.35
Consensus pattern (62 bp):
TACAACATTAAAACTTGGAACAAACTTTGTAATATAAATTTTGTTATATAAATTAAATACAC
Found at i:47612288 original size:18 final size:18
Alignment explanation
Indices: 47612265--47612301 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
47612255 AATAATACAT
47612265 TTTCTTTCTTCTCTTTTC
1 TTTCTTTCTTCTCTTTTC
*
47612283 TTTCTTTCTTCTGTTTTC
1 TTTCTTTCTTCTCTTTTC
47612301 T
1 T
47612302 CTCTCTTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.00, C:0.24, G:0.03, T:0.73
Consensus pattern (18 bp):
TTTCTTTCTTCTCTTTTC
Found at i:47633461 original size:2 final size:2
Alignment explanation
Indices: 47633454--47633485 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
47633444 CTAACTCAGG
47633454 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
47633486 ATCCTACATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:47636595 original size:51 final size:51
Alignment explanation
Indices: 47636516--47636618 Score: 161
Period size: 51 Copynumber: 2.0 Consensus size: 51
47636506 CTAATTAGTA
*
47636516 ACAAGTGATAAGTAGTAGCTTCAACTACACTTATCTAATCAGTGACAAGTG
1 ACAAGTGATAAATAGTAGCTTCAACTACACTTATCTAATCAGTGACAAGTG
* * * *
47636567 ACAAGTGATAAATGGTAGCTTTAGCTACACTTATCTTATCAGTGACAAGTG
1 ACAAGTGATAAATAGTAGCTTCAACTACACTTATCTAATCAGTGACAAGTG
47636618 A
1 A
47636619 TAAATATGAT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (51 bp):
ACAAGTGATAAATAGTAGCTTCAACTACACTTATCTAATCAGTGACAAGTG
Found at i:47637216 original size:14 final size:14
Alignment explanation
Indices: 47637197--47637230 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
47637187 TTGGTATCAA
47637197 ATTGGTTGAATTGG
1 ATTGGTTGAATTGG
**
47637211 ATTGGTTGGTTTGG
1 ATTGGTTGAATTGG
47637225 ATTGGT
1 ATTGGT
47637231 CTCGGTCTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.15, C:0.00, G:0.38, T:0.47
Consensus pattern (14 bp):
ATTGGTTGAATTGG
Found at i:47639807 original size:14 final size:14
Alignment explanation
Indices: 47639788--47639821 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
47639778 TAAGACAGAG
47639788 ACCAATCCAAACCA
1 ACCAATCCAAACCA
**
47639802 ACCAATCCAATTCA
1 ACCAATCCAAACCA
47639816 ACCAAT
1 ACCAAT
47639822 TTGATACCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.47, C:0.38, G:0.00, T:0.15
Consensus pattern (14 bp):
ACCAATCCAAACCA
Found at i:47640461 original size:7 final size:7
Alignment explanation
Indices: 47640445--47640481 Score: 56
Period size: 7 Copynumber: 5.3 Consensus size: 7
47640435 CTAAAGCTAC
47640445 CACTTGT
1 CACTTGT
*
47640452 CACTTAT
1 CACTTGT
47640459 CACTTGT
1 CACTTGT
*
47640466 CATTTGT
1 CACTTGT
47640473 CACTTGT
1 CACTTGT
47640480 CA
1 CA
47640482 TTGATCAGAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.19, C:0.27, G:0.11, T:0.43
Consensus pattern (7 bp):
CACTTGT
Found at i:47640482 original size:14 final size:14
Alignment explanation
Indices: 47640445--47640488 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
47640435 CTAAAGCTAC
*
47640445 CACTTGTCACTTAT
1 CACTTGTCATTTAT
*
47640459 CACTTGTCATTTGT
1 CACTTGTCATTTAT
*
47640473 CACTTGTCATTGAT
1 CACTTGTCATTTAT
47640487 CA
1 CA
47640489 GATAAGTGTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.20, C:0.25, G:0.11, T:0.43
Consensus pattern (14 bp):
CACTTGTCATTTAT
Found at i:47640520 original size:33 final size:33
Alignment explanation
Indices: 47640472--47640534 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
47640462 TTGTCATTTG
* *
47640472 TCACTTGTCATTGATCAGATAAGTGTAGCTAAA
1 TCACTTATCACTGATCAGATAAGTGTAGCTAAA
47640505 TCACTTATCACTGATCAGATAAGTGTAGCT
1 TCACTTATCACTGATCAGATAAGTGTAGCT
47640535 GAAGCTACTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Consensus pattern (33 bp):
TCACTTATCACTGATCAGATAAGTGTAGCTAAA
Found at i:47646082 original size:15 final size:15
Alignment explanation
Indices: 47646062--47646090 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
47646052 TCGCAGCGGC
47646062 AGCAGCCTTCTTCTG
1 AGCAGCCTTCTTCTG
47646077 AGCAGCCTTCTTCT
1 AGCAGCCTTCTTCT
47646091 TGCTCGCGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.34, G:0.17, T:0.34
Consensus pattern (15 bp):
AGCAGCCTTCTTCTG
Found at i:47654300 original size:15 final size:15
Alignment explanation
Indices: 47654280--47654308 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
47654270 TTGCAGCGGC
47654280 AGCAGCCTTCTTCTG
1 AGCAGCCTTCTTCTG
47654295 AGCAGCCTTCTTCT
1 AGCAGCCTTCTTCT
47654309 TGCTTGCGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.34, G:0.17, T:0.34
Consensus pattern (15 bp):
AGCAGCCTTCTTCTG
Found at i:47655197 original size:34 final size:33
Alignment explanation
Indices: 47655125--47655194 Score: 81
Period size: 33 Copynumber: 2.1 Consensus size: 33
47655115 ATATGTATAC
* * *
47655125 TAAATAACACTAAAATAAATACAACTTAACAAG
1 TAAATATCTCTAAAATAAATACAAATTAACAAG
47655158 TAAATATCTCTAAAAT-AATAACAAAATTAACAA-
1 TAAATATCTCTAAAATAAAT-AC-AAATTAACAAG
47655191 TAAA
1 TAAA
47655195 ATAAATTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
32 3 0.09
33 20 0.62
34 9 0.28
ACGTcount: A:0.61, C:0.13, G:0.01, T:0.24
Consensus pattern (33 bp):
TAAATATCTCTAAAATAAATACAAATTAACAAG
Found at i:47657500 original size:1000 final size:999
Alignment explanation
Indices: 47656065--47658861 Score: 4800
Period size: 1000 Copynumber: 2.8 Consensus size: 999
47656055 CGGCAAACAA
* *
47656065 CGGTATTTTATTTTTTTGACCGTTGGGTACTGTTCACGCGCGGGCCGAAATCGA-GACCTCGTCA
1 CGGTATTTTATTTTTTTGACCGTTGGGTACTGTTCACGCGCGGGCCGAAATC-ACGGCCACGTCA
* * *
47656129 GCGCGCTTTGCTGACGTGGCCGCGATTTTCTGGCGCGTACCCTGATATTACGCTGACATGGACGC
65 GCGCGCTTTGCTGACGTGGCCGCGATTTACTAGCGCGTACCCTGATATTACGCTGACGTGGACGC
*
47656194 GATTTCGCAAAAAATGGACCATTCCGGTAAATAATTAAATAATGGGCCCATTTCGGTAATTTTTG
130 GATTTCGCAAAAAATGGACCATTCCAGTAAATAATTAAATAATGGGCCCATTTCGGTAATTTTTG
* *
47656259 AAAAAAAGGGCTTTTATT-GTTAATTGCCCTTTTTTTGCTCTATTAACCCCTAAAAGCCGAACAT
195 AAAAAAAGGGCTTTTATTGGTAAATTGCCCTTTTTTTGCTCTATTAACCCCTGAAAGCCGAACAT
*
47656323 CCCTTTCCCTTTTCCTTTACCTGTTCGCCGGCAAAGTTTTATCAGCTATTTCCATCAGCTTCCCG
260 CCCTTTCCCTTTTCCTTTACCTGTTCGCCGGCAAAGTTTTATCAGCTATTTCCATCAGCTTTCCG
*
47656388 TTTCCATTGCTAATCCTACGCCACTAGATCCACCATCTCTTCTGTCGTGGTAATCATCCTCCTCC
325 TTTCCACTGCTAATCCTACGCCACTAGATCCACCATCTCTTCTGTCGTGGTAATCATCCTCCTCC
*
47656453 ATCGGGAACATTGGTACTCATGGCCCAGTTTGTCTTCTGTCTCTCTCCACCTCCTTCATAACAAA
390 ATCGGGAACATTGGTACTCATGGCCCAGTTTGTCTTCTGTCTCTCTCCACCTCCCTCATAACAAA
*
47656518 TCCCGGCACCTCATCCATAAGGTAAATCATTTCCCCGCTTTTTAGTCCCTCTGTAGCTATAATGT
455 TCCCGGCACCTCATCCATAAGGTAAATCGTTTCCCCGCTTTTTAGTCCCTCTGTAGCTATAATGT
47656583 GTGACGATTAATTTCCCCCTTTAGCAGTGTATAGAAACTTGCAGCTATGGAAACCCTCCCTTAAC
520 GTGACGATTAATTTCCCCCTTTAGCAGTGTATAGAAACTTGCAGCTATGGAAACCCTCCCTTAAC
*
47656648 TTCTGTATATCCTTGATAATAGCCCCAATAACCGAATCATGTTCCCGATTGCTGCACAACTTTTT
585 TTCTGTATATCCTTGATAATAGCCCCAATAACCGAATCATATTCCCGATTGCTGCACAACTTTTT
47656713 CACTACTTTTTCACAGCTTTTTAAAACATCGTGTTTAAGTTATTAATACGATTTGTACAAACATG
650 CACTACTTTTTCACAGCTTTTTAAAACATCGTGTTTAAGTTATTAATACGATTTGTACAAACATG
47656778 TTTACAAATTGATATATATATGTTTTTAAATATTTTCACGATAAATCCAAGTTATACTTAAACTA
715 TTTACAAATTGATATATATATGTTTTTAAATATTTTCACGATAAATCCAAGTTATACTTAAACTA
47656843 ACAAGGTT-AAAAAAATATGATTAATTCACGCGTAGATCTCGAAAAGTTAATCGAAAT-AAAAAA
780 ACAAGGTTAAAAAAAATATGATTAATTCACGCGTAGATCTCGAAAAGTTAATCGAAATAAAAAAA
*
47656906 AATCGCCTCAATCGGACAACCGAGCAAAAAGTTATGGTCTTTCAAGGTTTTCCAAGCTAAAAAAC
845 AAACGCCTCAATCGGACAACCGAGCAAAAAGTTATGGTCTTTCAAGGTTTTCCAAGCTAAAAAAC
* * *
47656971 ATAAACTGTTCATGAATTATTACTTCAAAATGCTTTTTTTGGAGGGAAAATACCAAAAAGCCCTA
910 ATAAACGGTTAATGAATTATTACTTCAAAATGCTTTTTTT-G-GGCAAAATACCAAAAAGCCCTA
47657036 TATTTTTAAAATTTATCGAAATGGGCC
973 TATTTTTAAAATTTATCGAAATGGGCC
* * *
47657063 CGGTATTTTATTTTTTTGACCGTTTGGTAGTGTTCACGCACGGGCCGAAATCACGGCCACGTCAG
1 CGGTATTTTATTTTTTTGACCGTTGGGTACTGTTCACGCGCGGGCCGAAATCACGGCCACGTCAG
*
47657128 CGCGCTTTGCTGACGTGGCCGCGATTTCCTAGCGCGTACCCTGATATTACGCTGACGTGGACGCG
66 CGCGCTTTGCTGACGTGGCCGCGATTTACTAGCGCGTACCCTGATATTACGCTGACGTGGACGCG
*
47657193 ATTTCGCAAAAAATGGACCATTCCAGTAAATAATTAAATAATGGGCCCATTTCGATAATTTTTGA
131 ATTTCGCAAAAAATGGACCATTCCAGTAAATAATTAAATAATGGGCCCATTTCGGTAATTTTTGA
* *
47657258 AAAAAATGGCTTTTATTGGTAAATTGCCCATTTTTTTGCTATATTAACCCCTGAAAGCCGAACAT
196 AAAAAAGGGCTTTTATTGGTAAATTGCCC-TTTTTTTGCTCTATTAACCCCTGAAAGCCGAACAT
* * * *
47657323 CCCTTTCCCTTTTCCTTTACCTGTTCGCCGGTAAAGTTTTATCAGCTATTTCCACCAACTTTTCG
260 CCCTTTCCCTTTTCCTTTACCTGTTCGCCGGCAAAGTTTTATCAGCTATTTCCATCAGCTTTCCG
* *
47657388 TTTCCACTGCTAATCCTACGGCACTAGATCCACCATCTCTTCCGTCGTGGTAATCATCCTCCTCC
325 TTTCCACTGCTAATCCTACGCCACTAGATCCACCATCTCTTCTGTCGTGGTAATCATCCTCCTCC
47657453 ATCGGGAACATTGGTACTCATGGCCCAGTTTGTCTTCTGTCTCTCTCCACCTCCCTCATAACAAA
390 ATCGGGAACATTGGTACTCATGGCCCAGTTTGTCTTCTGTCTCTCTCCACCTCCCTCATAACAAA
*
47657518 TCCCGGCACCTCATCCATAAGGTAAATCGTTTCCCCGCTTTTTAGTCCTTCTGTAGCTATAATGT
455 TCCCGGCACCTCATCCATAAGGTAAATCGTTTCCCCGCTTTTTAGTCCCTCTGTAGCTATAATGT
47657583 GTGACGATTAATTTCCCCCTTTAGCAGTGTATAGAAACTTGCAGCTATGGAAACCCTCCCTTAAC
520 GTGACGATTAATTTCCCCCTTTAGCAGTGTATAGAAACTTGCAGCTATGGAAACCCTCCCTTAAC
47657648 TTCTGTATATCCTTGATAATAGCCCCAATAACCGAATCATATTCCCGATTGCTGCACAACTTTTT
585 TTCTGTATATCCTTGATAATAGCCCCAATAACCGAATCATATTCCCGATTGCTGCACAACTTTTT
47657713 CACTACTTTTTCACAGCTTTTTAAAACATCGTGTTTAAGTTATTAATACGATTTGTACAAACATG
650 CACTACTTTTTCACAGCTTTTTAAAACATCGTGTTTAAGTTATTAATACGATTTGTACAAACATG
47657778 TTTACAAATTGATATATATATGTTTTTAAATATTTTCACGATAAATCCAAGTTATACTTAAACTA
715 TTTACAAATTGATATATATATGTTTTTAAATATTTTCACGATAAATCCAAGTTATACTTAAACTA
47657843 ACAAGGTTAAAAAAAATATGATTAATTCACGCGTAGATCTCGAAAAGTTAATCGAAATAAAAAAA
780 ACAAGGTTAAAAAAAATATGATTAATTCACGCGTAGATCTCGAAAAGTTAATCGAAATAAAAAAA
*
47657908 AAACGCCTCAATCGGACAACCGAGCGAAAAGTTATGGTCTTTCAAGGTTTTCCAAGCTAAAAAAC
845 AAACGCCTCAATCGGACAACCGAGCAAAAAGTTATGGTCTTTCAAGGTTTTCCAAGCTAAAAAAC
47657973 ATAAACGGTTAATGAATTATTACTTCAAAATGCTTTTTTTGGGCAAAATACCAAAAAGCCCTATA
910 ATAAACGGTTAATGAATTATTACTTCAAAATGCTTTTTTTGGGCAAAATACCAAAAAGCCCTATA
47658038 TTTTTAAAATTTATCGAAATGGGCC
975 TTTTTAAAATTTATCGAAATGGGCC
* * * * *
47658063 CGGTATTTTATTTTTTTGACTGTTGGGTACTGGTCACGCGCGGTCCGAAATCTCCGCCACGTCAG
1 CGGTATTTTATTTTTTTGACCGTTGGGTACTGTTCACGCGCGGGCCGAAATCACGGCCACGTCAG
** ** * ** * **
47658128 CAAAG-TGCGCTGACGTGACCGCGATTTAC-AGGCGCAAACCCTGACATCGCGCTGACGTGGACG
66 C-GCGCTTTGCTGACGTGGCCGCGATTTACTA-GCGCGTACCCTGATATTACGCTGACGTGGACG
** * *
47658191 CGATTTCGCGGAAAATGGACCATTCCCGTAAATAATTAAATAATGGACCCATTTCGGTAATTTTT
129 CGATTTCGCAAAAAATGGACCATTCCAGTAAATAATTAAATAATGGGCCCATTTCGGTAATTTTT
* * *
47658256 GAAAATAAGGGTTTTTATTGGTAAATTGCTCGTTTTTTTGCTCTATTAACCCCTGAAAGCCGAAC
194 GAAAAAAAGGGCTTTTATTGGTAAATTGC-CCTTTTTTTGCTCTATTAACCCCTGAAAGCCGAAC
47658321 ATCCCTTTCCCTTTTCCTTTACCTGTTCGCCGGCAAAGTTTTATCAGCTATTTCCATCAGCTTTC
258 ATCCCTTTCCCTTTTCCTTTACCTGTTCGCCGGCAAAGTTTTATCAGCTATTTCCATCAGCTTTC
*
47658386 CGTTTCCACTGCTAATCCTACGCCACTAGATCCACCATCTCTTCTGTTGTGGTAATCATCCTCCT
323 CGTTTCCACTGCTAATCCTACGCCACTAGATCCACCATCTCTTCTGTCGTGGTAATCATCCTCCT
* * *
47658451 CCATCGGGAACATTGATACTCATGACCCAGTTTGTGTTCTGTCTCTCTCCACCTCCCTCATAACA
388 CCATCGGGAACATTGGTACTCATGGCCCAGTTTGTCTTCTGTCTCTCTCCACCTCCCTCATAACA
*
47658516 AATCCCGGCACCTCATCCATAAGGTAAATCGTTTCCCCGCTTTTTAGTCCCTCTGTAGCCATAAT
453 AATCCCGGCACCTCATCCATAAGGTAAATCGTTTCCCCGCTTTTTAGTCCCTCTGTAGCTATAAT
* *
47658581 GTGTGACGATTCATTTCCCCCCTTAGCAGTGTATAGAAACTTGCAGCTATGGAAACCCTCCCTTA
518 GTGTGACGATTAATTTCCCCCTTTAGCAGTGTATAGAAACTTGCAGCTATGGAAACCCTCCCTTA
* *
47658646 ACCTCTGTATATCCTTGATAATAGCCCCAATAACCGAATCATCTTCCCGATTGCTG--C-A----
583 ACTTCTGTATATCCTTGATAATAGCCCCAATAACCGAATCATATTCCCGATTGCTGCACAACTTT
47658704 --CA--ACTTTTTCACAGCTTTTTAAAACATCGTGTTTAAGTTATTAATACGATTTGTACAAACA
648 TTCACTACTTTTTCACAGCTTTTTAAAACATCGTGTTTAAGTTATTAATACGATTTGTACAAACA
* *
47658765 TGTTTACAAATTGATATATATATGTTTTTACATATTTTCACGATAAATCCCAGTTATACTTAAAC
713 TGTTTACAAATTGATATATATATGTTTTTAAATATTTTCACGATAAATCCAAGTTATACTTAAAC
* *
47658830 TAACAAGATTAAAAGAAAATCTGATTAATTCA
778 TAACAAGGTTAAAA-AAAATATGATTAATTCA
47658862 TTGTTGATAT
Statistics
Matches: 1710, Mismatches: 80, Indels: 26
0.94 0.04 0.01
Matches are distributed among these distances:
989 135 0.08
990 16 0.01
991 2 0.00
997 2 0.00
998 200 0.12
999 11 0.01
1000 1185 0.69
1001 52 0.03
1002 107 0.06
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (999 bp):
CGGTATTTTATTTTTTTGACCGTTGGGTACTGTTCACGCGCGGGCCGAAATCACGGCCACGTCAG
CGCGCTTTGCTGACGTGGCCGCGATTTACTAGCGCGTACCCTGATATTACGCTGACGTGGACGCG
ATTTCGCAAAAAATGGACCATTCCAGTAAATAATTAAATAATGGGCCCATTTCGGTAATTTTTGA
AAAAAAGGGCTTTTATTGGTAAATTGCCCTTTTTTTGCTCTATTAACCCCTGAAAGCCGAACATC
CCTTTCCCTTTTCCTTTACCTGTTCGCCGGCAAAGTTTTATCAGCTATTTCCATCAGCTTTCCGT
TTCCACTGCTAATCCTACGCCACTAGATCCACCATCTCTTCTGTCGTGGTAATCATCCTCCTCCA
TCGGGAACATTGGTACTCATGGCCCAGTTTGTCTTCTGTCTCTCTCCACCTCCCTCATAACAAAT
CCCGGCACCTCATCCATAAGGTAAATCGTTTCCCCGCTTTTTAGTCCCTCTGTAGCTATAATGTG
TGACGATTAATTTCCCCCTTTAGCAGTGTATAGAAACTTGCAGCTATGGAAACCCTCCCTTAACT
TCTGTATATCCTTGATAATAGCCCCAATAACCGAATCATATTCCCGATTGCTGCACAACTTTTTC
ACTACTTTTTCACAGCTTTTTAAAACATCGTGTTTAAGTTATTAATACGATTTGTACAAACATGT
TTACAAATTGATATATATATGTTTTTAAATATTTTCACGATAAATCCAAGTTATACTTAAACTAA
CAAGGTTAAAAAAAATATGATTAATTCACGCGTAGATCTCGAAAAGTTAATCGAAATAAAAAAAA
AACGCCTCAATCGGACAACCGAGCAAAAAGTTATGGTCTTTCAAGGTTTTCCAAGCTAAAAAACA
TAAACGGTTAATGAATTATTACTTCAAAATGCTTTTTTTGGGCAAAATACCAAAAAGCCCTATAT
TTTTAAAATTTATCGAAATGGGCC
Done.