Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53248092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1300000 characters in sequence are not A, C, G, or T
File 168 of 175
Found at i:50497335 original size:17 final size:17
Alignment explanation
Indices: 50497202--50497370 Score: 162
Period size: 18 Copynumber: 9.8 Consensus size: 17
50497192 CAAGAATTTT
* *
50497202 TTTTTAAAACACGATAA
1 TTTTTGAAACACGAAAA
*
50497219 -TTTTGAAACAC-AATAT
1 TTTTTGAAACACGAA-AA
50497235 TTTTTGAAGACACGAAAA
1 TTTTTGAA-ACACGAAAA
* **
50497253 TTTTTGAAACAAAGAATT
1 TTTTTGAAAC-ACGAAAA
*
50497271 TTTTTGAAACACAAAAA
1 TTTTTGAAACACGAAAA
*
50497288 CTTTTGAAACACGAAAA
1 TTTTTGAAACACGAAAA
50497305 TTTTTGAAAACACGAAAA
1 TTTTTG-AAACACGAAAA
**
50497323 TTTTTGAAACACGGGAA
1 TTTTTGAAACACGAAAA
* *
50497340 CTTTTGAAAACACGGAAA
1 TTTTTG-AAACACGAAAA
*
50497358 TTTATGAAACACG
1 TTTTTGAAACACG
50497371 GGATATTTTT
Statistics
Matches: 125, Mismatches: 20, Indels: 14
0.79 0.13 0.09
Matches are distributed among these distances:
15 1 0.01
16 11 0.09
17 53 0.42
18 58 0.46
19 2 0.02
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.30
Consensus pattern (17 bp):
TTTTTGAAACACGAAAA
Found at i:50497396 original size:18 final size:17
Alignment explanation
Indices: 50497202--50497417 Score: 156
Period size: 18 Copynumber: 12.4 Consensus size: 17
50497192 CAAGAATTTT
*
50497202 TTTTTAAAACACG-ATA
1 TTTTTGAAACACGAATA
*
50497218 ATTTTGAAACAC-AATA
1 TTTTTGAAACACGAATA
*
50497234 TTTTTTGAAGACACGAAAA
1 -TTTTTGAA-ACACGAATA
* *
50497253 TTTTTGAAACAAAGAATT
1 TTTTTGAAAC-ACGAATA
* *
50497271 TTTTTGAAACACAAAAA
1 TTTTTGAAACACGAATA
* *
50497288 CTTTTGAAACACGAAAA
1 TTTTTGAAACACGAATA
*
50497305 TTTTTGAAAACACGAAAA
1 TTTTTG-AAACACGAATA
*
50497323 TTTTTGAAACACGGGA-A
1 TTTTTGAAACAC-GAATA
*
50497340 CTTTTGAAAACACGGAA-A
1 TTTTTG-AAACAC-GAATA
* *
50497358 TTTATGAAACACGGGATATT
1 TTTTTGAAACAC--GA-ATA
50497378 TTTTTGAAAACACGAAT-
1 TTTTTG-AAACACGAATA
*
50497395 TTTTTGAAACATGAAT-
1 TTTTTGAAACACGAATA
50497411 TTTTTGA
1 TTTTTGA
50497418 TTTTTTTCTT
Statistics
Matches: 166, Mismatches: 22, Indels: 24
0.78 0.10 0.11
Matches are distributed among these distances:
16 29 0.17
17 56 0.34
18 64 0.39
19 6 0.04
20 5 0.03
21 6 0.04
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.33
Consensus pattern (17 bp):
TTTTTGAAACACGAATA
Found at i:50497414 original size:17 final size:18
Alignment explanation
Indices: 50497184--50497415 Score: 103
Period size: 17 Copynumber: 13.1 Consensus size: 18
50497174 TGTGATCTGA
*
50497184 TTGAAATACAAGAATTTTTT
1 TTGAAA-ACACGAA-TTTTT
* **
50497204 TTTAAAACACG-ATAATT
1 TTGAAAACACGAATTTTT
50497221 TTG-AAACAC-AATATTTT
1 TTGAAAACACGAAT-TTTT
* **
50497238 TTGAAGACACGAAAATTT
1 TTGAAAACACGAATTTTT
*
50497256 TTG-AAACAAAGAATTTTT
1 TTGAAAAC-ACGAATTTTT
* ***
50497274 TTG-AAACACAAAAACTT
1 TTGAAAACACGAATTTTT
**
50497291 TTG-AAACACGAAAATTT
1 TTGAAAACACGAATTTTT
**
50497308 TTGAAAACACGAAAATTT
1 TTGAAAACACGAATTTTT
*
50497326 TTG-AAACACGGGAA--CTT
1 TTGAAAACAC--GAATTTTT
*
50497343 TTGAAAACACGGAA-ATTT
1 TTGAAAACAC-GAATTTTT
*
50497361 ATG-AAACACGGGATATTTTT
1 TTGAAAACAC--GA-ATTTTT
50497381 TTGAAAACACGAA-TTTT
1 TTGAAAACACGAATTTTT
*
50497398 TTG-AAACATGAATTTTT
1 TTGAAAACACGAATTTTT
50497415 T
1 T
50497416 GATTTTTTTC
Statistics
Matches: 170, Mismatches: 27, Indels: 33
0.74 0.12 0.14
Matches are distributed among these distances:
16 16 0.09
17 69 0.41
18 57 0.34
19 12 0.07
20 10 0.06
21 6 0.04
ACGTcount: A:0.43, C:0.11, G:0.12, T:0.34
Consensus pattern (18 bp):
TTGAAAACACGAATTTTT
Found at i:50497781 original size:26 final size:27
Alignment explanation
Indices: 50497752--50497803 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
50497742 TAAATTAAAA
50497752 ATATAAATA-CAAAAATATAAAAATGC
1 ATATAAATACCAAAAATATAAAAATGC
* * *
50497778 ATATAAGTACCAATAATATTAAAATG
1 ATATAAATACCAAAAATATAAAAATG
50497804 GAATAGCATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 8 0.36
27 14 0.64
ACGTcount: A:0.60, C:0.08, G:0.06, T:0.27
Consensus pattern (27 bp):
ATATAAATACCAAAAATATAAAAATGC
Found at i:50497930 original size:9 final size:9
Alignment explanation
Indices: 50497908--50497971 Score: 53
Period size: 9 Copynumber: 7.1 Consensus size: 9
50497898 AAATTGAACC
50497908 CCTTTTCTTT
1 CCTTTT-TTT
50497918 -CTTTTTTT
1 CCTTTTTTT
50497926 CCTTTTTTT
1 CCTTTTTTT
50497935 -CTTTCTTTT
1 CCTTT-TTTT
*
50497944 -TTTTTCTTT
1 CCTTTT-TTT
* *
50497953 TCTTTTTTC
1 CCTTTTTTT
50497962 CCTTTTTTT
1 CCTTTTTTT
50497971 C
1 C
50497972 TGCTGGGCTG
Statistics
Matches: 45, Mismatches: 5, Indels: 9
0.76 0.08 0.15
Matches are distributed among these distances:
8 8 0.18
9 33 0.73
10 4 0.09
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (9 bp):
CCTTTTTTT
Found at i:50497947 original size:14 final size:15
Alignment explanation
Indices: 50497928--50497960 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
50497918 CTTTTTTTCC
50497928 TTTTTTTC-TTTCTT
1 TTTTTTTCTTTTCTT
50497942 TTTTTTTCTTTTCTT
1 TTTTTTTCTTTTCTT
50497957 TTTT
1 TTTT
50497961 CCCTTTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (15 bp):
TTTTTTTCTTTTCTT
Found at i:50497967 original size:14 final size:11
Alignment explanation
Indices: 50497910--50497961 Score: 61
Period size: 12 Copynumber: 4.5 Consensus size: 11
50497900 ATTGAACCCC
50497910 TTTTCTTTCTTT
1 TTTTCTTT-TTT
50497922 TTTTCCTTTTTT
1 TTTT-CTTTTTT
50497934 TCTTTC-TTTTT
1 T-TTTCTTTTTT
50497945 TTTTCTTTTCTT
1 TTTTCTTTT-TT
50497957 TTTTC
1 TTTTC
50497962 CCTTTTTTTC
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
10 4 0.11
11 9 0.25
12 16 0.44
13 7 0.19
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (11 bp):
TTTTCTTTTTT
Found at i:50497972 original size:22 final size:22
Alignment explanation
Indices: 50497910--50497972 Score: 69
Period size: 22 Copynumber: 2.9 Consensus size: 22
50497900 ATTGAACCCC
50497910 TTTTCTTT--CTTTTTTTCCTTT
1 TTTTCTTTCCCTTTTTTT-CTTT
**
50497931 TTTTCTTTCTTTTTTTTTCTTT
1 TTTTCTTTCCCTTTTTTTCTTT
50497953 TCTTT-TTTCCCTTTTTTTCT
1 T-TTTCTTTCCCTTTTTTTCT
50497973 GCTGGGCTGG
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
21 8 0.22
22 18 0.50
23 10 0.28
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (22 bp):
TTTTCTTTCCCTTTTTTTCTTT
Found at i:50498247 original size:14 final size:13
Alignment explanation
Indices: 50498219--50498263 Score: 67
Period size: 13 Copynumber: 3.5 Consensus size: 13
50498209 TTCTTTCCCT
50498219 TTCTTCTTTTTTC
1 TTCTTCTTTTTTC
50498232 TTCTTCTTTCTTTC
1 TTCTTCTTT-TTTC
50498246 TTC-TCTTTTTTC
1 TTCTTCTTTTTTC
50498258 -TCTTCT
1 TTCTTCT
50498264 CCTTCGGCCT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
11 2 0.07
12 7 0.23
13 14 0.47
14 7 0.23
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (13 bp):
TTCTTCTTTTTTC
Found at i:50498264 original size:14 final size:13
Alignment explanation
Indices: 50498225--50498264 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
50498215 CCCTTTCTTC
50498225 TTTTTTCTTCTTCT
1 TTTTTTCTTC-TCT
*
50498239 TTCTTTCTTCTCT
1 TTTTTTCTTCTCT
50498252 TTTTTCTCTTCTC
1 TTTTT-TCTTCTC
50498265 CTTCGGCCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 7 0.30
14 16 0.70
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTTTTCTTCTCT
Found at i:50498340 original size:17 final size:17
Alignment explanation
Indices: 50498318--50498356 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
50498308 TGGCTGCTGG
50498318 TTTCTCCCCTTCCCTCC
1 TTTCTCCCCTTCCCTCC
* * *
50498335 TTTCTCTCCTTTCCTTC
1 TTTCTCCCCTTCCCTCC
50498352 TTTCT
1 TTTCT
50498357 TCTTCTTCCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54
Consensus pattern (17 bp):
TTTCTCCCCTTCCCTCC
Found at i:50499185 original size:77 final size:77
Alignment explanation
Indices: 50498995--50499834 Score: 963
Period size: 77 Copynumber: 10.9 Consensus size: 77
50498985 AAAAATCGAG
* * * * *
50498995 AATAGCTCGGCGTGCGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAAC
1 AATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAA
*
50499060 AGAAACTT--AA
66 AGAAATTTAAAA
* * * *
50499070 AATACCTCAGCGTGCGACCCAAGGCTCAACTCATCTCTCGCAATATGAGTT-AGTTTTTGAAAAA
1 AATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAA
50499134 AAGAAATTTAAAA
65 AAGAAATTTAAAA
* * *
50499147 AATACCTCGGTGTGTGACCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAAC
1 AATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAA
*
50499212 AGAAGTTTAAAAGA
66 AGAAATTT-AAA-A
* * * * *
50499226 AATACATCAGC--ATGACCCGAGGCTCAACTCACCTCTTGCAATATGACTTGATTTTTGAAAAAC
1 AATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA-
50499289 AA-AAATTTAAAAGA
65 AAGAAATTT-AAA-A
* * * * * **
50499303 AATACCTCAGCATGTGACCCAATGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAGC
1 AATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAA
*
50499368 AGAAA-TTGAAA
66 AGAAATTTAAAA
* *
50499379 AATACCTCAGC--ATGA-CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAA
1 AATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAA
*
50499441 CAGAAA-TTGAAA
66 -AGAAATTTAAAA
*
50499453 AATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAC
1 AATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA-
50499518 AA-AAATTTAAAAGA
65 AAGAAATTT-AAA-A
** * * * *
50499532 AATACAACGGCATGTG-TCCAAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAA
1 AATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTG-AAAA
50499596 AATAGAAATTTAAAA
64 AA-AGAAATTTAAAA
* * * *
50499611 AATACCTCAGTGTGTGACCTGAGGCTCAAATCACCTCTCGCAATATGAGTTGATTTTTGAAAAAC
1 AATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA-
*
50499676 AA-AAATTTTAAA
65 AAGAAATTTAAAA
* * *
50499688 AATACCTCAGCGTGTG-TCCGAGGCTCAACTCACCTCTCGCAATATGATTTGATTTTTTTGAAAA
1 AATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTG-AAA
50499752 AAATAGAAATTTAAAAA
63 AAA-AGAAATTT-AAAA
*** *
50499769 AATACCTCGATATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAA
1 AATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAA
50499834 A
66 A
50499835 AACAGAAGTT
Statistics
Matches: 661, Mismatches: 73, Indels: 59
0.83 0.09 0.07
Matches are distributed among these distances:
73 42 0.06
74 25 0.04
75 66 0.10
76 50 0.08
77 207 0.31
78 57 0.09
79 108 0.16
80 52 0.08
81 21 0.03
82 33 0.05
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (77 bp):
AATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAA
AGAAATTTAAAA
Found at i:50499344 original size:156 final size:154
Alignment explanation
Indices: 50499010--50499832 Score: 1038
Period size: 158 Copynumber: 5.3 Consensus size: 154
50499000 CTCGGCGTGC
* * *
50499010 GACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAACAGAAACTT--AAAAT
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAAAT
* * * *
50499073 ACCTCAGCGTGCGACCCAAGGCTCAACTCATCTCTCGCAATATGAGTT-AGTTTTTG-AAAAAAA
66 ACCTCAGCAT--GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAAAA
*
50499136 GAAATTTAAAAAATACCTCGGTGTGT
129 GAAATTTAAAAAATACCTCAGTGTGT
* *
50499162 GACCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACAGAAGTTTAAAAGAA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTT-AAA-AA
* * * *
50499227 ATACATCAGCATGACCCGAGGCTCAACTCACCTCTTGCAATATGACTTGA-TTTTTGAAAAACAA
64 ATACCTCAGCATGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAAAA
**
50499291 -AAATTTAAAAGAAATACCTCAGCATGT
129 GAAATTT-AAA-AAATACCTCAGTGTGT
* * * * *
50499318 GACCCAATGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAGCAGAAA-TTGAAAAAT
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAAAT
*
50499382 ACCTCAGCATGA-CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAAACAGA
66 ACCTCAGCATGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAAAAGA
* * *
50499445 AA-TTGAAAAATACCTCGGCGTGT
131 AATTTAAAAAATACCTCAGTGTGT
* *
50499468 GACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTTAAAAGAA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTT-AAA-AA
** * ** * *
50499533 ATACAACGGCATGTGTCCAAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAAA
64 ATACCTCAGCATG-ACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAAA
50499598 TAGAAATTTAAAAAATACCTCAGTGTGT
128 -AGAAATTTAAAAAATACCTCAGTGTGT
* * * *
50499626 GACCTGAGGCTCAAATCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTTTAAAAAT
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAAAT
* ** *
50499691 ACCTCAGCGTGTGTCCGAGGCTCAACTCACCTCTCGCAATATGATTTGATTTTTTTGAAAAAAAT
66 ACCTCAGCATG-ACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAAAA-
*
50499756 AGAAATTTAAAAAAATACCTC-GATATGT
128 AGAAATTT-AAAAAATACCTCAG-TGTGT
*
50499784 GACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
50499833 AAAACAGAAG
Statistics
Matches: 595, Mismatches: 56, Indels: 34
0.87 0.08 0.05
Matches are distributed among these distances:
150 63 0.11
151 4 0.01
152 102 0.17
153 30 0.05
154 46 0.08
155 46 0.08
156 134 0.23
157 31 0.05
158 139 0.23
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (154 bp):
GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAAAT
ACCTCAGCATGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAAAAGA
AATTTAAAAAATACCTCAGTGTGT
Found at i:50499422 original size:229 final size:227
Alignment explanation
Indices: 50499010--50499834 Score: 1020
Period size: 229 Copynumber: 3.6 Consensus size: 227
50499000 CTCGGCGTGC
* * * *
50499010 GACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAACAGAAACTT---AAAA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTTAAAAAAA
* * *
50499072 TACCTCAGCGTGCGACCCAAGGCTCAACTCATCTCTCGCAATATGAGTT-AGTTTTTGAAAAAAA
66 TACCTCAGCATGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGAGTTTTTGAAAAAAA
* *
50499136 GAAATTTAAAAAATACCTCGGTGTGTGACCCGAGGCTCAACTCACCTCTCACAATATGAGTTGAT
131 GAAATTTAAAAAATACCTC--AGTGTGA-CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* *
50499201 TTTTGAAAAACAGAAGTTTAAAAGAAATACATCAGCAT
193 TTTTGAAAAACAGAA-TTT-AAA-AAATACCTCAGCGT
* *
50499239 GACCCGAGGCTCAACTCACCTCTTGCAATATGACTTGATTTTTGAAAAACAAAAATTTAAAAGAA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTTAAAA-AA
* * **
50499304 ATACCTCAGCATGTGACCCAATGCTCAACTCACCTCTCACAATATGAGTTGA-TTTTTGAAAAGC
65 ATACCTCAGCATGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGAGTTTTTGAAAAAA
* **
50499368 AGAAA-TTGAAAAATACCTCAGCATGACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
130 AGAAATTTAAAAAATACCTCAGTGTGACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* * *
50499432 TTGAAAAAACAGAAATTGAAAAATACCTCGGCGTGT
195 TTG-AAAAACAGAATTTAAAAAATACCTCAGC--GT
*
50499468 GACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTTAAAAGAA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTTAAAA-AA
** * * * *
50499533 ATACAACGGCATGTG-TCCAAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAA
65 ATACCTCAGCATGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGAGTTTTTG-AAAAA
*
50499597 ATAGAAATTTAAAAAATACCTCAGTGTGTGACCTGAGGCTCAAATCACCTCTCGCAATATGAGTT
129 A-AGAAATTTAAAAAATACCTCA--GTGTGACC-GAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
50499662 GATTTTTGAAAAACAAAAATTTTAAAAATACCTCAGCGT
190 GATTTTTGAAAAAC-AGAATTTAAAAAATACCTCAGCGT
** * *
50499701 GTGTCCGAGGCTCAACTCACCTCTCGCAATATGATTTGATTTTTTTGAAAAAAATAGAAATTTAA
1 G-ACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACA-A-AAATTTAA
* **
50499766 AAAAATACCTC-GATATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGA
61 AAAAATACCTCAG-CATGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGAGTTTTTGA
50499829 AAAAAA
125 AAAAAA
50499835 AACAGAAGTT
Statistics
Matches: 518, Mismatches: 55, Indels: 40
0.85 0.09 0.07
Matches are distributed among these distances:
227 10 0.02
228 34 0.07
229 175 0.34
230 18 0.03
231 5 0.01
232 28 0.05
233 65 0.13
234 46 0.09
235 57 0.11
236 19 0.04
237 19 0.04
238 42 0.08
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (227 bp):
GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTTAAAAAAA
TACCTCAGCATGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGAGTTTTTGAAAAAAA
GAAATTTAAAAAATACCTCAGTGTGACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TGAAAAACAGAATTTAAAAAATACCTCAGCGT
Found at i:50502383 original size:44 final size:44
Alignment explanation
Indices: 50502320--50502408 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
50502310 GCGTTCGATG
* *
50502320 CACCATCAAAACTTATCTTCCATGATTGATCTTTTGATGATTCA
1 CACCATCAAAAATCATCTTCCATGATTGATCTTTTGATGATTCA
50502364 CACCATCAAAAATCATCTTCCATGATTGATCTTTTGATGATTCA
1 CACCATCAAAAATCATCTTCCATGATTGATCTTTTGATGATTCA
50502408 C
1 C
50502409 CTTCGAAAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.30, C:0.24, G:0.09, T:0.37
Consensus pattern (44 bp):
CACCATCAAAAATCATCTTCCATGATTGATCTTTTGATGATTCA
Found at i:50504321 original size:36 final size:36
Alignment explanation
Indices: 50504274--50504346 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
50504264 AAAATGCATC
50504274 TTCATTGATGTTCATTGAAATGATAAAAAGCAAACA
1 TTCATTGATGTTCATTGAAATGATAAAAAGCAAACA
50504310 TTCATTGATGTTCATTGAAATGATAAAAAGCAAACA
1 TTCATTGATGTTCATTGAAATGATAAAAAGCAAACA
50504346 T
1 T
50504347 AAGCTCTTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.44, C:0.11, G:0.14, T:0.32
Consensus pattern (36 bp):
TTCATTGATGTTCATTGAAATGATAAAAAGCAAACA
Found at i:50508122 original size:17 final size:16
Alignment explanation
Indices: 50508102--50508300 Score: 123
Period size: 17 Copynumber: 11.4 Consensus size: 16
50508092 AACACGATAA
50508102 TTTTGAAACACAATATT
1 TTTTGAAACACAA-ATT
50508119 TTTTGAAGACACGATAA-T
1 TTTTGAA-ACAC-A-AATT
*
50508137 TTTTGAAACAAAGGAATT
1 TTTTGAAACACA--AATT
**
50508155 TTTTGAAACACGAAAAC
1 TTTTGAAACAC-AAATT
*
50508172 TTTTGAAACACGAAAAT
1 TTTTGAAACAC-AAATT
*
50508189 TTTTGAAAACACGAAAAT
1 TTTTG-AAACAC-AAATT
*
50508207 TTTTGAAACACAAGAAT
1 TTTTGAAACACAA-ATT
50508224 TTTTGAAAACACGGAAA-T
1 TTTTG-AAACAC--AAATT
* *
50508242 TTATGAAACACGGGATATTT
1 TTTTGAAACAC---A-AATT
*
50508262 TTTTGAAAACACGAATT
1 TTTTG-AAACACAAATT
*
50508279 TTTTGAAACACGAATT
1 TTTTGAAACACAAATT
50508295 TTTTGA
1 TTTTGA
50508301 TTTTTTTTCT
Statistics
Matches: 156, Mismatches: 11, Indels: 31
0.79 0.06 0.16
Matches are distributed among these distances:
16 20 0.13
17 63 0.40
18 54 0.35
19 5 0.03
20 8 0.05
21 6 0.04
ACGTcount: A:0.42, C:0.11, G:0.14, T:0.33
Consensus pattern (16 bp):
TTTTGAAACACAAATT
Found at i:50508141 original size:35 final size:34
Alignment explanation
Indices: 50508070--50508300 Score: 211
Period size: 35 Copynumber: 6.6 Consensus size: 34
50508060 TGTGATCCAA
* * *
50508070 TTGAAATACGATATTTTTTTAAAACACGATAA-TT
1 TTGAAACACAATATTTTTTGAAAACACGA-AATTT
*
50508104 TTGAAACACAATATTTTTTGAAGACACGATAATTT
1 TTGAAACACAATATTTTTTGAAAACACGA-AATTT
* *
50508139 TTGAAACA-AAGGAATTTTTTG-AAACACGAAAACTT
1 TTGAAACACAA--TATTTTTTGAAAACACG-AAATTT
*
50508174 TTGAAACACGAA-AATTTTTGAAAACACGAAAATTT
1 TTGAAACAC-AATATTTTTTGAAAACACG-AAATTT
* *
50508209 TTGAAACACAAGAATTTTTGAAAACACGGAAATTT
1 TTGAAACACAATATTTTTTGAAAACAC-GAAATTT
* * *
50508244 ATGAAACACGGGATATTTTTTTGAAAACACGAATTTT
1 TTGAAACAC--AATA-TTTTTTGAAAACACGAAATTT
*
50508281 TTGAAACACGA-ATTTTTTGA
1 TTGAAACACAATATTTTTTGA
50508301 TTTTTTTTCT
Statistics
Matches: 170, Mismatches: 15, Indels: 25
0.81 0.07 0.12
Matches are distributed among these distances:
33 8 0.05
34 40 0.24
35 81 0.48
36 10 0.06
37 18 0.11
38 13 0.08
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.34
Consensus pattern (34 bp):
TTGAAACACAATATTTTTTGAAAACACGAAATTT
Found at i:50508822 original size:9 final size:10
Alignment explanation
Indices: 50508803--50508839 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
50508793 AATTGAACCC
50508803 TTTTTCTTTT
1 TTTTTCTTTT
50508813 TTTTTCTTTTT
1 TTTTTC-TTTT
*
50508824 TTTTTCCTTT
1 TTTTTCTTTT
50508834 TTTTTC
1 TTTTTC
50508840 CTGCTGGGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
10 15 0.60
11 10 0.40
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (10 bp):
TTTTTCTTTT
Found at i:50508823 original size:11 final size:11
Alignment explanation
Indices: 50508803--50508838 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
50508793 AATTGAACCC
50508803 TTTTTC-TTTT
1 TTTTTCTTTTT
50508813 TTTTTCTTTTT
1 TTTTTCTTTTT
50508824 TTTTTCCTTTTT
1 TTTTT-CTTTTT
50508836 TTT
1 TTT
50508839 CCTGCTGGGC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 6 0.25
11 9 0.38
12 9 0.38
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (11 bp):
TTTTTCTTTTT
Found at i:50509123 original size:14 final size:12
Alignment explanation
Indices: 50509091--50509134 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
50509081 TGTTAATTAT
*
50509091 TTTTTTCTTTTCC
1 TTTTTTCTTCT-C
*
50509104 TTTCTTCTT-TC
1 TTTTTTCTTCTC
50509115 TTTTTTCTTCTC
1 TTTTTTCTTCTC
50509127 TTTTTTCT
1 TTTTTTCT
50509135 CTTCTCCTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
11 9 0.32
12 11 0.39
13 8 0.29
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTTTTCTTCTC
Found at i:50509128 original size:12 final size:11
Alignment explanation
Indices: 50509091--50509139 Score: 53
Period size: 12 Copynumber: 4.1 Consensus size: 11
50509081 TGTTAATTAT
50509091 TTTTTTCTTTTCC
1 TTTTTTC-TTT-C
*
50509104 TTTCTTCTTTC
1 TTTTTTCTTTC
50509115 TTTTTTCTTCTC
1 TTTTTTCTT-TC
50509127 TTTTTTCTCTTC
1 TTTTTTCT-TTC
50509139 T
1 T
50509140 CCTTCAGCCT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
11 9 0.28
12 16 0.50
13 7 0.22
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTTTTCTTTC
Found at i:50509139 original size:24 final size:24
Alignment explanation
Indices: 50509091--50509139 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
50509081 TGTTAATTAT
*
50509091 TTTTTTCTTTTCCTTTCTTCTTTC
1 TTTTTTCTTCTCCTTTCTTCTTTC
*
50509115 TTTTTTCTTCT-CTTTTTTCTCTTC
1 TTTTTTCTTCTCCTTTCTTCT-TTC
50509139 T
1 T
50509140 CCTTCAGCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 8 0.36
24 14 0.64
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (24 bp):
TTTTTTCTTCTCCTTTCTTCTTTC
Found at i:50509675 original size:30 final size:30
Alignment explanation
Indices: 50509634--50509721 Score: 113
Period size: 30 Copynumber: 2.9 Consensus size: 30
50509624 TAAACGCAGT
* **
50509634 AAAAGTTTTGGGGTTGAAACATAATTTTGAG
1 AAAA-TTTTGGGGTCGAAATGTAATTTTGAG
*
50509665 AAAATTTTGGGGTCAAAATGTAATTTTGAG
1 AAAATTTTGGGGTCGAAATGTAATTTTGAG
* *
50509695 AAAGTTTAGGGGTCGAAATGTAATTTT
1 AAAATTTTGGGGTCGAAATGTAATTTT
50509722 TTAAATAAAA
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
30 46 0.92
31 4 0.08
ACGTcount: A:0.35, C:0.03, G:0.25, T:0.36
Consensus pattern (30 bp):
AAAATTTTGGGGTCGAAATGTAATTTTGAG
Found at i:50521578 original size:27 final size:27
Alignment explanation
Indices: 50521539--50521645 Score: 151
Period size: 27 Copynumber: 4.0 Consensus size: 27
50521529 GTATTGGCGT
* *
50521539 CTATTTGGAAGGCTCCAATGGTGGTGC
1 CTATTTGGGAGGCGCCAATGGTGGTGC
*
50521566 CTATTTGGGAGGCGCCAATGGTAGTGC
1 CTATTTGGGAGGCGCCAATGGTGGTGC
*
50521593 CTATTTGGGAAGCGCCAATGGTGGTGC
1 CTATTTGGGAGGCGCCAATGGTGGTGC
* * *
50521620 CTATGTAGCAGGCGCCAATGGTGGTG
1 CTATTTGGGAGGCGCCAATGGTGGTG
50521646 TCATATTAGA
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 71 1.00
ACGTcount: A:0.19, C:0.19, G:0.36, T:0.26
Consensus pattern (27 bp):
CTATTTGGGAGGCGCCAATGGTGGTGC
Found at i:50521659 original size:27 final size:27
Alignment explanation
Indices: 50521539--50521666 Score: 134
Period size: 27 Copynumber: 4.7 Consensus size: 27
50521529 GTATTGGCGT
* *
50521539 CTATTTGGAAGGCTCCAATGGTGGTGC
1 CTATTTAGAAGGCGCCAATGGTGGTGC
* * *
50521566 CTATTTGGGAGGCGCCAATGGTAGTGC
1 CTATTTAGAAGGCGCCAATGGTGGTGC
*
50521593 CTATTTGGGAA-GCGCCAATGGTGGTGC
1 CTATTT-AGAAGGCGCCAATGGTGGTGC
* * *
50521620 CTATGTAGCAGGCGCCAATGGTGGTGT
1 CTATTTAGAAGGCGCCAATGGTGGTGC
*
50521647 C-ATATTAGAAGGCGCAAATG
1 CTAT-TTAGAAGGCGCCAATG
50521667 CTGTGATTTT
Statistics
Matches: 86, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
26 4 0.05
27 79 0.92
28 3 0.03
ACGTcount: A:0.22, C:0.18, G:0.34, T:0.26
Consensus pattern (27 bp):
CTATTTAGAAGGCGCCAATGGTGGTGC
Found at i:50521777 original size:22 final size:22
Alignment explanation
Indices: 50521724--50521776 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
50521714 TACAAAAATG
*
50521724 GAAG-AGAGAAGAAGGAAGGAA
1 GAAGAAGAAAAGAAGGAAGGAA
*
50521745 GCAGAAGAAAAGAAGGAAGGAA
1 GAAGAAGAAAAGAAGGAAGGAA
50521767 -AAGAAGAAAA
1 GAAGAAGAAAA
50521777 AAAGTAGGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 12 0.43
22 16 0.57
ACGTcount: A:0.62, C:0.02, G:0.36, T:0.00
Consensus pattern (22 bp):
GAAGAAGAAAAGAAGGAAGGAA
Found at i:50525116 original size:6 final size:6
Alignment explanation
Indices: 50525098--50525147 Score: 64
Period size: 6 Copynumber: 8.3 Consensus size: 6
50525088 AGAATGTGGT
* * * *
50525098 TCTGGG TCTGGC TCCGGC TCTGGC GCTGGC TCTGGG TCTGGC TCTGGC
1 TCTGGC TCTGGC TCTGGC TCTGGC TCTGGC TCTGGC TCTGGC TCTGGC
50525146 TC
1 TC
50525148 CGGTGCATGA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.00, C:0.32, G:0.38, T:0.30
Consensus pattern (6 bp):
TCTGGC
Found at i:50526893 original size:38 final size:38
Alignment explanation
Indices: 50526850--50526931 Score: 146
Period size: 38 Copynumber: 2.2 Consensus size: 38
50526840 AAAAAGTCAG
50526850 TTATAATTAAACTTTTAATAAAATGATTTTTAATTTAT
1 TTATAATTAAACTTTTAATAAAATGATTTTTAATTTAT
* *
50526888 TTATAATTAAACTTTTAATGAAATGATTTTTAATTTTT
1 TTATAATTAAACTTTTAATAAAATGATTTTTAATTTAT
50526926 TTATAA
1 TTATAA
50526932 ACTTTATATG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 42 1.00
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (38 bp):
TTATAATTAAACTTTTAATAAAATGATTTTTAATTTAT
Found at i:50527001 original size:35 final size:35
Alignment explanation
Indices: 50526962--50527036 Score: 150
Period size: 35 Copynumber: 2.1 Consensus size: 35
50526952 CAAATACTAA
50526962 ACTAAACACAACAACTTATAGCTTAATCCTAAATT
1 ACTAAACACAACAACTTATAGCTTAATCCTAAATT
50526997 ACTAAACACAACAACTTATAGCTTAATCCTAAATT
1 ACTAAACACAACAACTTATAGCTTAATCCTAAATT
50527032 ACTAA
1 ACTAA
50527037 TAAATTAAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.47, C:0.23, G:0.03, T:0.28
Consensus pattern (35 bp):
ACTAAACACAACAACTTATAGCTTAATCCTAAATT
Found at i:50527186 original size:19 final size:19
Alignment explanation
Indices: 50527162--50527634 Score: 158
Period size: 19 Copynumber: 25.2 Consensus size: 19
50527152 ATATCCCCAC
50527162 ATTACAATATTCATACAAA
1 ATTACAATATTCATACAAA
*
50527181 ATTACAATA-T--TACAAT
1 ATTACAATATTCATACAAA
*
50527197 ATT-C-ATA--CA-AAAAA
1 ATTACAATATTCATACAAA
*
50527211 ATTGCAATATTCATACAAAATTATA
1 ATTACAATATTCATAC---A--A-A
*
50527236 ATATTACAATATTCATACAAC
1 AT--TACAATATTCATACAAA
*
50527257 ATTACAATATTCATAAAAA
1 ATTACAATATTCATACAAA
* *
50527276 ATTATAATATTCATGCAAA
1 ATTACAATATTCATACAAA
*
50527295 ATTACAATA-T--TACAAT
1 ATTACAATATTCATACAAA
*
50527311 ATT-C-ATA--CA-AAAAA
1 ATTACAATATTCATACAAA
*
50527325 ATTGCAATATTCATACAAA
1 ATTACAATATTCATACAAA
* *
50527344 ATTATAATA-T--TACAAT
1 ATTACAATATTCATACAAA
50527360 ATT-C-ATA--CA-A-AAA
1 ATTACAATATTCATACAAA
* *
50527373 AATATAATATTCATACAAA
1 ATTACAATATTCATACAAA
* *
50527392 ATTACAA-AAT--TACAAT
1 ATTACAATATTCATACAAA
50527408 ATT-C-ATA--CA-A-AAA
1 ATTACAATATTCATACAAA
50527421 ATTGA-AATATTCATACAAAACTATAA
1 ATT-ACAATATTCAT-----AC-A-AA
50527447 TATTACAATATTCATACAAAAA
1 -ATTACAATATTCATAC--AAA
*
50527469 ATTTATAATATTCATACAAA
1 A-TTACAATATTCATACAAA
50527489 ATTACAATATTCATACAAAAA
1 ATTACAATATTCATAC--AAA
* * *
50527510 ATTACTA-ATCCAAAACTATAA
1 ATTACAATATTC-ATAC-A-AA
*
50527531 A-TACAAATTTAATT-ATAAAATA
1 ATTAC-AA--T-ATTCATACAA-A
*
50527553 ATTACAATATTCATACAAC
1 ATTACAATATTCATACAAA
*
50527572 ATTACAATATTCATAAAAA
1 ATTACAATATTCATACAAA
*
50527591 ATTATAATATTCATACAAAAA
1 ATTACAATATTCATAC--AAA
*
50527612 ATTTAAAATATTCATACAAA
1 A-TTACAATATTCATACAAA
50527632 ATT
1 ATT
50527635 CTAATCTAAA
Statistics
Matches: 341, Mismatches: 47, Indels: 132
0.66 0.09 0.25
Matches are distributed among these distances:
13 9 0.03
14 24 0.07
15 12 0.04
16 37 0.11
17 4 0.01
18 10 0.03
19 118 0.35
20 21 0.06
21 24 0.07
22 39 0.11
23 7 0.02
24 2 0.01
25 6 0.02
26 3 0.01
27 25 0.07
ACGTcount: A:0.54, C:0.13, G:0.01, T:0.33
Consensus pattern (19 bp):
ATTACAATATTCATACAAA
Found at i:50527198 original size:27 final size:26
Alignment explanation
Indices: 50527162--50527499 Score: 264
Period size: 27 Copynumber: 14.1 Consensus size: 26
50527152 ATATCCCCAC
50527162 ATTACAATATTCATACAAAATTACAAT
1 ATTACAATATTCATACAAAATTA-AAT
50527189 ATTACAATATTCATAC-AAA--AAA-
1 ATTACAATATTCATACAAAATTAAAT
*
50527211 ATTGCAATATTCATACAAAATTATAAT
1 ATTACAATATTCATACAAAATTA-AAT
*
50527238 ATTACAATATTCATAC-------AAC
1 ATTACAATATTCATACAAAATTAAAT
*
50527257 ATTACAATATTCATAAAAAATTATAAT
1 ATTACAATATTCATACAAAATTA-AAT
*
50527284 ATT--------CATGCAAAATTACAAT
1 ATTACAATATTCATACAAAATTA-AAT
50527303 ATTACAATATTCATAC-AAA--AAA-
1 ATTACAATATTCATACAAAATTAAAT
*
50527325 ATTGCAATATTCATACAAAATTATAAT
1 ATTACAATATTCATACAAAATTA-AAT
50527352 ATTACAATATTCATACAAAA--AAAT
1 ATTACAATATTCATACAAAATTAAAT
*
50527376 A-T--AATATTCATACAAAATTACAAA
1 ATTACAATATTCATACAAAATTA-AAT
50527400 ATTACAATATTCATAC-AAA--AAAT
1 ATTACAATATTCATACAAAATTAAAT
* *
50527423 -TGA-AATATTCATACAAAACTATAAT
1 ATTACAATATTCATACAAAATTA-AAT
50527448 ATTACAATATTCATAC-AAA--AAAT
1 ATTACAATATTCATACAAAATTAAAT
*
50527471 -TTATAATATTCATACAAAATTACAAT
1 ATTACAATATTCATACAAAATTA-AAT
50527497 ATT
1 ATT
50527500 CATACAAAAA
Statistics
Matches: 252, Mismatches: 16, Indels: 86
0.71 0.05 0.24
Matches are distributed among these distances:
19 33 0.13
21 26 0.10
22 49 0.19
23 20 0.08
24 12 0.05
25 8 0.03
26 21 0.08
27 83 0.33
ACGTcount: A:0.53, C:0.13, G:0.01, T:0.33
Consensus pattern (26 bp):
ATTACAATATTCATACAAAATTAAAT
Found at i:50527239 original size:49 final size:46
Alignment explanation
Indices: 50527114--50527508 Score: 238
Period size: 49 Copynumber: 8.5 Consensus size: 46
50527104 ATTATAAAAT
* * *
50527114 AATTACAATATTCATACAAAAAATTACAATATTACAATA-T-ATCCCCA
1 AATTACAATATTCATAC--AAAATTATAATATTACAATATTCAT-ACAA
* *
50527161 CATTACAATATTCATACAAAATTACAATATTACAATATTCATACAAAAA
1 AATTACAATATTCATACAAAATTATAATATTACAATATTCATAC---AA
*
50527210 AATTGCAATATTCATACAAAATTATAATATTACAATATTCATACAA
1 AATTACAATATTCATACAAAATTATAATATTACAATATTCATACAA
* * *
50527256 CATTACAATATTCATAAAAAATTATAATATTCATGCAA-AAT--TACAA
1 AATTACAATATTCATACAAAATTATAATATT-A--CAATATTCATACAA
* ** *
50527302 TATTACAATATTCATACAAAAAAATTGCAATATTCATACAAAATT-AT--AA
1 AATTACAATATTCATAC---AAAATTATAATA-T--TACAATATTCATACAA
* * *
50527351 TATTACAATATTCATACAAAAAAATATAATATTCATACAA-AAT--TACAA
1 AATTACAATATTCATAC--AAAATTATAATA-T--TACAATATTCATACAA
*
50527399 AATTACAATATTCATACAAAAAATTGA-AATATT-C-ATA--CAAAACTATA
1 AATTACAATATTCATAC--AAAATT-ATAATATTACAATATTC-ATAC-A-A
*
50527446 ATATTACAATATTCATAC-AAA--A-AAT-TTATAATATTCATACAA
1 A-ATTACAATATTCATACAAAATTATAATATTACAATATTCATACAA
50527488 AATTACAATATTCATACAAAA
1 AATTACAATATTCATACAAAA
50527509 AATTACTAAT
Statistics
Matches: 293, Mismatches: 24, Indels: 67
0.76 0.06 0.17
Matches are distributed among these distances:
41 18 0.06
42 9 0.03
43 5 0.02
44 5 0.02
45 27 0.09
46 54 0.18
47 24 0.08
48 67 0.23
49 78 0.27
50 3 0.01
51 2 0.01
52 1 0.00
ACGTcount: A:0.53, C:0.14, G:0.01, T:0.32
Consensus pattern (46 bp):
AATTACAATATTCATACAAAATTATAATATTACAATATTCATACAA
Found at i:50527298 original size:114 final size:114
Alignment explanation
Indices: 50527162--50527514 Score: 402
Period size: 114 Copynumber: 3.0 Consensus size: 114
50527152 ATATCCCCAC
50527162 ATTACAATATTCATACAAAATTACAATATTACAATATTCATACAAAAAAATTGCAATATTCATAC
1 ATTACAATATTCATACAAAATTACAATATTACAATATTCATACAAAAAAATTGCAATATTCATAC
50527227 AAAATTATAATATTACAATATTCATACAACATTACAATATTCATAAAAA
66 AAAATTATAATATTACAATATTCATACAACATTACAATATTCATAAAAA
* *
50527276 ATTATAATATTCATGCAAAATTACAATATTACAATATTCATACAAAAAAATTGCAATATTCATAC
1 ATTACAATATTCATACAAAATTACAATATTACAATATTCATACAAAAAAATTGCAATATTCATAC
* * * *
50527341 AAAATTATAATATTACAATATTCATACAAAAAAATATAATATTCATACAAA
66 AAAATTATAATATTACAATATTCATAC--AACATTACAATATTCATAAAAA
* *
50527392 ATTACAAAATTACAATATTCATACAA--A-AA-ATTGA-AATATTCATACAAAACTATAATATTA
1 ATTACAATATT-C-ATA--CA-A-AATTACAATATT-ACAATATTCATAC-AAA--A-AA-ATTG
* *
50527452 CAATATTCATAC-AAA--A-AAT-TTATAATATTCATACAAAATTACAATATTCATACAAAAA
54 CAATATTCATACAAAATTATAATATTACAATATTCATACAACATTACAATATTCAT--AAAAA
50527510 ATTAC
1 ATTAC
50527515 TAATCCAAAA
Statistics
Matches: 209, Mismatches: 14, Indels: 28
0.83 0.06 0.11
Matches are distributed among these distances:
114 90 0.43
116 42 0.20
117 1 0.00
118 39 0.19
119 9 0.04
120 4 0.02
121 2 0.01
122 7 0.03
123 15 0.07
ACGTcount: A:0.54, C:0.13, G:0.01, T:0.32
Consensus pattern (114 bp):
ATTACAATATTCATACAAAATTACAATATTACAATATTCATACAAAAAAATTGCAATATTCATAC
AAAATTATAATATTACAATATTCATACAACATTACAATATTCATAAAAA
Found at i:50527372 original size:48 final size:48
Alignment explanation
Indices: 50527115--50527499 Score: 379
Period size: 48 Copynumber: 8.1 Consensus size: 48
50527105 TTATAAAATA
* ** * *
50527115 ATTACAATATTCATACAAAAAATTACAATA-T--TACAATATATCCCCAC
1 ATTACAATATTCATACAAAAAATTATAATATTCATACAA-A-ATTACAAT
*
50527162 ATTACAATATTCATACAAAATTACAATATTACAATATTCATAC-AAA--A-AA-
1 ATTACAATATTCATAC--AA--A-AA-ATTATAATATTCATACAAAATTACAAT
* * *
50527211 ATTGCAATATTCATAC--AAAATTATAATA-T--TACAATATTCATACAAC
1 ATTACAATATTCATACAAAAAATTATAATATTCATACAA-AAT--TACAAT
*
50527257 ATTACAATATTCAT--AAAAAATTATAATATTCATGCAAAATTACAAT
1 ATTACAATATTCATACAAAAAATTATAATATTCATACAAAATTACAAT
** *
50527303 ATTACAATATTCATACAAAAAAATTGCAATATTCATACAAAATTATAAT
1 ATTACAATATTCATAC-AAAAAATTATAATATTCATACAAAATTACAAT
* *
50527352 ATTACAATATTCATACAAAAAAATATAATATTCATACAAAATTACAAA
1 ATTACAATATTCATACAAAAAATTATAATATTCATACAAAATTACAAT
* *
50527400 ATTACAATATTCATACAAAAAATTGA-AATATTCATACAAAACTATAAT
1 ATTACAATATTCATACAAAAAATT-ATAATATTCATACAAAATTACAAT
50527448 ATTACAATATTCATACAAAAAATTTATAATATTCATACAAAATTACAAT
1 ATTACAATATTCATACAAAAAA-TTATAATATTCATACAAAATTACAAT
50527497 ATT
1 ATT
50527500 CATACAAAAA
Statistics
Matches: 286, Mismatches: 24, Indels: 54
0.79 0.07 0.15
Matches are distributed among these distances:
38 3 0.01
39 1 0.00
40 2 0.01
41 8 0.03
42 2 0.01
43 1 0.00
44 1 0.00
45 2 0.01
46 44 0.15
47 17 0.06
48 94 0.33
49 91 0.32
50 1 0.00
51 1 0.00
52 2 0.01
53 10 0.03
54 2 0.01
55 1 0.00
56 3 0.01
ACGTcount: A:0.53, C:0.14, G:0.01, T:0.32
Consensus pattern (48 bp):
ATTACAATATTCATACAAAAAATTATAATATTCATACAAAATTACAAT
Found at i:50527396 original size:97 final size:96
Alignment explanation
Indices: 50527257--50527499 Score: 409
Period size: 97 Copynumber: 2.5 Consensus size: 96
50527247 TTCATACAAC
*
50527257 ATTACAATATTCAT--AAAAAATTATAATATTCATGCAAAATTACAATATTACAATATTCATACA
1 ATTACAATATTCATACAAAAAATTATAATATTCATACAAAATTACAATATTACAATATTCATAC-
* *
50527320 AAAAAATTGCAATATTCATACAAAATTATAAT
65 AAAAAATTGAAATATTCATACAAAACTATAAT
* *
50527352 ATTACAATATTCATACAAAAAAATATAATATTCATACAAAATTACAAAATTACAATATTCATACA
1 ATTACAATATTCATACAAAAAATTATAATATTCATACAAAATTACAATATTACAATATTCATACA
50527417 AAAAATTGAAATATTCATACAAAACTATAAT
66 AAAAATTGAAATATTCATACAAAACTATAAT
50527448 ATTACAATATTCATACAAAAAATTTATAATATTCATACAAAATTACAATATT
1 ATTACAATATTCATACAAAAAA-TTATAATATTCATACAAAATTACAATATT
50527500 CATACAAAAA
Statistics
Matches: 138, Mismatches: 7, Indels: 4
0.93 0.05 0.03
Matches are distributed among these distances:
95 14 0.10
96 52 0.38
97 72 0.52
ACGTcount: A:0.54, C:0.12, G:0.01, T:0.33
Consensus pattern (96 bp):
ATTACAATATTCATACAAAAAATTATAATATTCATACAAAATTACAATATTACAATATTCATACA
AAAAATTGAAATATTCATACAAAACTATAAT
Found at i:50527608 original size:49 final size:47
Alignment explanation
Indices: 50527553--50527639 Score: 71
Period size: 41 Copynumber: 2.0 Consensus size: 47
50527543 TTATAAAATA
* * *
50527553 ATTACAATATTCATAC-AACATTACAATATTCATAAAAAATTATAAT
1 ATTACAATATTCATACAAAAATTATAATATTCATACAAAATTATAAT
* * *
50527599 ATT-C-ATA--CA-A-AAAATTTAAAATATTCATACAAAATTCTAAT
1 ATTACAATATTCATACAAAAATTATAATATTCATACAAAATTATAAT
50527640 CTAAACTATA
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
41 26 0.74
42 2 0.06
44 3 0.09
45 1 0.03
46 3 0.09
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.34
Consensus pattern (47 bp):
ATTACAATATTCATACAAAAATTATAATATTCATACAAAATTATAAT
Found at i:50527819 original size:14 final size:15
Alignment explanation
Indices: 50527800--50527831 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
50527790 TTTTTTTCTT
50527800 TCTTCTTCTCC-TTC
1 TCTTCTTCTCCTTTC
50527814 TCTTCTTCTCCTTTC
1 TCTTCTTCTCCTTTC
50527829 TCT
1 TCT
50527832 CTTTTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (15 bp):
TCTTCTTCTCCTTTC
Found at i:50527834 original size:14 final size:14
Alignment explanation
Indices: 50527797--50527834 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
50527787 TTTTTTTTTT
50527797 CTTTCT-TCTTCTC
1 CTTTCTCTCTTCTC
50527810 C-TTCTCTTCTTCTC
1 CTTTCTC-TCTTCTC
50527824 CTTTCTCTCTT
1 CTTTCTCTCTT
50527835 TTTTTTTCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 4 0.18
13 1 0.05
14 12 0.55
15 5 0.23
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (14 bp):
CTTTCTCTCTTCTC
Found at i:50531739 original size:14 final size:13
Alignment explanation
Indices: 50531717--50531746 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
50531707 ACTTTTCCAC
50531717 AGCACTTTTTAAA
1 AGCACTTTTTAAA
50531730 AGCACTTTTTAAA
1 AGCACTTTTTAAA
50531743 AGCA
1 AGCA
50531747 TTGCCAAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (13 bp):
AGCACTTTTTAAA
Found at i:50540315 original size:20 final size:20
Alignment explanation
Indices: 50540268--50540305 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
50540258 TGTATCTAGG
*
50540268 ATAAT-AAAATTTTATTCCT
1 ATAATAAAAAATTTATTCCT
50540287 ATAATAAAAAATTTATTCC
1 ATAATAAAAAATTTATTCC
50540306 ATTACTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.42
Consensus pattern (20 bp):
ATAATAAAAAATTTATTCCT
Found at i:50541207 original size:29 final size:29
Alignment explanation
Indices: 50541165--50541220 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
50541155 GGAGGATATG
* *
50541165 CGTTTGAGTGTACTGAAGCACATTATCAA
1 CGTTCGAGTGTACTAAAGCACATTATCAA
50541194 CGTTCGAGTGTACTAAAGCACATTATC
1 CGTTCGAGTGTACTAAAGCACATTATC
50541221 GATATTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (29 bp):
CGTTCGAGTGTACTAAAGCACATTATCAA
Found at i:50546285 original size:17 final size:17
Alignment explanation
Indices: 50546263--50546297 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
50546253 TAAAACATCA
50546263 TTTTTACAA-TTTTCATT
1 TTTTTA-AAGTTTTCATT
50546280 TTTTTAAAGTTTTCATT
1 TTTTTAAAGTTTTCATT
50546297 T
1 T
50546298 AATATTATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 15 0.88
ACGTcount: A:0.23, C:0.09, G:0.03, T:0.66
Consensus pattern (17 bp):
TTTTTAAAGTTTTCATT
Found at i:50548157 original size:22 final size:22
Alignment explanation
Indices: 50548130--50548178 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
50548120 TTTTATAATT
50548130 TATAACATATAAAAATAAAATC
1 TATAACATATAAAAATAAAATC
* * * *
50548152 TATAACTTTTAAAAATAATATT
1 TATAACATATAAAAATAAAATC
50548174 TATAA
1 TATAA
50548179 TGTATGACAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (22 bp):
TATAACATATAAAAATAAAATC
Found at i:50554023 original size:20 final size:20
Alignment explanation
Indices: 50553996--50554053 Score: 73
Period size: 20 Copynumber: 2.9 Consensus size: 20
50553986 GCAAAAATCA
50553996 AAAGTATCGATACCCTTGTC
1 AAAGTATCGATACCCTTGTC
* *
50554016 ATAGTATCGATA-CCTTCCTC
1 AAAGTATCGATACCCTT-GTC
*
50554036 AAAGTATTGATACCCTTG
1 AAAGTATCGATACCCTTG
50554054 ACAGTATAGA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
19 4 0.13
20 23 0.74
21 4 0.13
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (20 bp):
AAAGTATCGATACCCTTGTC
Found at i:50556549 original size:11 final size:10
Alignment explanation
Indices: 50556533--50556572 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
50556523 TAGCTTCTAT
50556533 AAACAACAAAA
1 AAACAA-AAAA
50556544 AAACAAAAAA
1 AAACAAAAAA
*
50556554 AAA-ACAAAA
1 AAACAAAAAA
50556563 AAACAAAAAA
1 AAACAAAAAA
50556573 GTCCTCTCCT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
9 8 0.31
10 12 0.46
11 6 0.23
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (10 bp):
AAACAAAAAA
Found at i:50556911 original size:12 final size:12
Alignment explanation
Indices: 50556887--50556919 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
50556877 TTCGTTTATC
50556887 AAAAATAA-AAA
1 AAAAATAATAAA
50556898 AAACAATAATAAA
1 AAA-AATAATAAA
50556911 AAAAATAAT
1 AAAAATAAT
50556920 GGTAAAAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 3 0.15
12 11 0.55
13 6 0.30
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (12 bp):
AAAAATAATAAA
Found at i:50557936 original size:130 final size:130
Alignment explanation
Indices: 50557603--50558137 Score: 485
Period size: 134 Copynumber: 4.0 Consensus size: 130
50557593 TGGATGTGAT
* ** *
50557603 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGCTCTTCACTCTATTCCACTGTTGCCTAGGG
1 CTGCTCCACTAATGCTTAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTGTTGCCCAGGG
**
50557668 AGATAGAACTACCAGCTTCAATGTACTCCACCGTAATCAGTGGGAGGTAAAATCTGCCATCTTCG
66 AGATAGAACTACTGGCTTCAATGTACTCCACCGTAATCA--GGGAGGTAAAATCTGCCATCTTCG
*
50557733 AT
129 AC
* * * * ** *
50557735 CTGCTTCGCTGCCAAATAC--AGGAAGGCAAGATCTGCAATCTTCACTCTATTCCACTGTTGCCC
1 CTGC-TC-C--ACTAATGCTTAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTGTTGCCC
* *
50557798 AGGGAGATAGAACTACTGGCTTTAATGTACTCCACCGTAATCAGGGAGGTAAAATCCGCCATCTT
62 AGGGAGATAGAACTACTGGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCTT
50557863 CGAC
127 CGAC
*
50557867 CTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAATCTTCGA-TCTATTCCACTGTTGCCCAGG
1 CTGCTCCACTAATGCTTAGGGAGATAAGATCTGTAATCTTC-ACTCTATTCCACTGTTGCCCAGG
* * * *
50557931 AAGATAGAACTA-TCGGCTTCAATGTACTCCACTGTAGTCACAGAGAGGTAAAATCTGCCATCTT
65 GAGATAGAACTACT-GGCTTCAATGTACTCCACCGTAAT--CAGGGAGGTAAAATCTGCCATCTT
50557995 CGATC
127 CGA-C
* * ** * * ***
50558000 TACTTCGCTGCCA--AATAC--AGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
1 --C-T-GCT-CCACTAATGCTTAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTG--TTG
** * ** * *
50558061 TACAGAGAGATAGAGTTA-TCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCA
59 CCCAGGGAGATAGAACTACT-GGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCA
* *
50558125 TCTTTGAT
123 TCTTCGAC
50558133 CTGCT
1 CTGCT
50558138 TCGCTGCCAA
Statistics
Matches: 336, Mismatches: 48, Indels: 41
0.79 0.11 0.10
Matches are distributed among these distances:
128 4 0.01
129 4 0.01
130 75 0.22
131 4 0.01
132 57 0.17
133 4 0.01
134 135 0.40
135 1 0.00
136 46 0.14
137 3 0.01
138 3 0.01
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (130 bp):
CTGCTCCACTAATGCTTAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTGTTGCCCAGGG
AGATAGAACTACTGGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCTTCGAC
Found at i:50558057 original size:46 final size:46
Alignment explanation
Indices: 50557976--50558620 Score: 241
Period size: 46 Copynumber: 14.3 Consensus size: 46
50557966 AGTCACAGAG
* * * *
50557976 AGGTAAAATCTGCCATCTTCGATCTACTT-CGCTGCCAAATACAGGA
1 AGGTAAGATCTGCAATCTTCAATCTA-TTCCACTGCCAAATACAGGA
*
50558022 AGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACA-GA
1 AGGTAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGA
* * * ** * * * * *
50558067 GAGATAGAGTTAT-C-GGCTTCAATGTACTCCACTG--TAGT-CAGGG
1 -AGGTA-AGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGA
* * ** * *
50558110 AGGTAAAATCTGCCATCTTTGATCTGCTT-CGCTGCCAAATACAGGA
1 AGGTAAGATCTGCAATCTTCAATCT-ATTCCACTGCCAAATACAGGA
* * *
50558156 AGGCAAGATCTGCAATCTTAAATCTATTCCACTGCCAAATACAGGG
1 AGGTAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGA
* * * ** * * * *
50558202 AGATAGAGTTAT-C-GGCTTCAATGTACTCCACTG--TAGTCACATGG-
1 AGGTA-AGATCTGCAATCTTCAATCTATTCCACTGCCAAAT-ACA-GGA
* * ** * *
50558246 AGGTAAAATCTGCCATCTTTGATCTGCTT-CGCTGCCAAATACAGGA
1 AGGTAAGATCTGCAATCTTCAATCT-ATTCCACTGCCAAATACAGGA
* *
50558292 AGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGG
1 AGGTAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGA
* * * ** * * * *
50558338 AGATAGAGTTAT-C-GGCTTCAATGTACTCCACTG--TAGTCACATGG-
1 AGGTA-AGATCTGCAATCTTCAATCTATTCCACTGCCAAAT-ACA-GGA
* * ** * *
50558382 AGGTAAAATCTGCCATCTTTGATCTGCTT-CGCTGCCAAATACAGGA
1 AGGTAAGATCTGCAATCTTCAATCT-ATTCCACTGCCAAATACAGGA
* *
50558428 AGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGG
1 AGGTAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGA
* * * ** * * * *
50558474 AGATAGAGTTAT-C-GGCTTCAATGTACTCCACTG--TAGTCACATGG-
1 AGGTA-AGATCTGCAATCTTCAATCTATTCCACTGCCAAAT-ACA-GGA
* * ** * *
50558518 AGGTAAAATCTGCCATCTTTGATCTGCTT-CGCTGCCAAATACAGGA
1 AGGTAAGATCTGCAATCTTCAATCT-ATTCCACTGCCAAATACAGGA
* * *
50558564 AGGCAAGATCTGCAATCTTCGATCTACTT-CAC-GCC-AATACATGA
1 AGGTAAGATCTGCAATCTTCAATCTA-TTCCACTGCCAAATACAGGA
*
50558608 AGATAAGATCTGC
1 AGGTAAGATCTGC
50558621 TTTCTTCGAT
Statistics
Matches: 421, Mismatches: 137, Indels: 84
0.66 0.21 0.13
Matches are distributed among these distances:
41 3 0.01
42 7 0.02
43 28 0.07
44 44 0.10
45 120 0.29
46 197 0.47
47 22 0.05
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.27
Consensus pattern (46 bp):
AGGTAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGA
Found at i:50558097 original size:136 final size:135
Alignment explanation
Indices: 50557927--50558604 Score: 1202
Period size: 136 Copynumber: 5.0 Consensus size: 135
50557917 CACTGTTGCC
* **
50557927 CAGGAAGATAGAACTATCGGCTTCAATGTACTCCACTGTAGTCACAGAGAGGTAAAATCTGCCAT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCACAG-GAGGTAAAATCTGCCAT
* *
50557992 CTTCGATCTACTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGC
65 CTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGC
50558057 CAAATA
130 CAAATA
* *
50558063 CAGAGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCA-GGGAGGTAAAATCTGCCATC
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCACAGGAGGTAAAATCTGCCATC
*
50558127 TTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTAAATCTATTCCACTGCC
66 TTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCC
50558192 AAATA
131 AAATA
50558197 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCACATGGAGGTAAAATCTGCCAT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCACA-GGAGGTAAAATCTGCCAT
50558262 CTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGC
65 CTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGC
50558327 CAAATA
130 CAAATA
50558333 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCACATGGAGGTAAAATCTGCCAT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCACA-GGAGGTAAAATCTGCCAT
50558398 CTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGC
65 CTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGC
50558463 CAAATA
130 CAAATA
50558469 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCACATGGAGGTAAAATCTGCCAT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCACA-GGAGGTAAAATCTGCCAT
*
50558534 CTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCGATCTACTT-CAC-G
65 CTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTA-TTCCACTG
50558597 CC-AATA
129 CCAAATA
50558603 CA
1 CA
50558605 TGAAGATAAG
Statistics
Matches: 527, Mismatches: 12, Indels: 8
0.96 0.02 0.01
Matches are distributed among these distances:
134 134 0.25
135 4 0.01
136 387 0.73
137 2 0.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.27
Consensus pattern (135 bp):
CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCACAGGAGGTAAAATCTGCCATC
TTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCC
AAATA
Found at i:50558439 original size:406 final size:397
Alignment explanation
Indices: 50557682--50558582 Score: 1268
Period size: 406 Copynumber: 2.2 Consensus size: 397
50557672 AGAACTACCA
* * *
50557682 GCTTCAATGTACTCCACCGTAATCAGTGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGC
1 GCTTCAATGTACTCCACTGTAGTCA--GGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGC
* * *** *
50557747 CAAATACAGGAAGGCAAGATCTGCAATCTTCACTCTATTCCACTGTTGCCCAGGGAGATAGAACT
64 CAAATACAGGAAGGCAAGATCTGCAATCTTAAATCTATTCCACTGAAACACAGGGAGATAGAACT
* *
50557812 ACTGGCTTTAATGTACTCCACCGTAATCAGGGAGGTAAAATCCGCCATCTTCGACCTGCTCCACT
129 ACTGGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCCGCCATCTTCGACCTGCTCCACA
* * * * * * *** *
50557877 ATTGCTTAGGGAGATAAGATCTGTAATCTTCGATCTATTCCACTGTTGCCCAGGAAGATAGAACT
194 AATAC-TAGGAAGACAAGATCTGCAATCTTCAATCTATTCCACTGAAACACAGGAAGATAGAACT
50557942 ATCGGCTTCAATGTACTCCACTGTAGTCACAGAGAGGTAAAATCTGCCATCTTCGATCTACTTCG
258 ATCGGCTTCAATGTACTCCACTGTAGTCACAGAGAGGTAAAATCTGCCATCTTCGATCTACTTCG
50558007 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGAGAGAT
323 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGAGAGAT
50558072 AGAGTTATCG
388 AGAGTTATCG
50558082 GCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCA
1 GCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCA
* **
50558147 AATACAGGAAGGCAAGATCTGCAATCTTAAATCTATTCCACTGCCAAATACAGGGAGATAGAGTT
66 AATACAGGAAGGCAAGATCTGCAATCTTAAATCTATTCCACTG--AAACACAGGGAGATAGAACT
* * * * * *
50558212 A-TCGGCTTCAATGTACTCCACTGTAGTCACATGGAGGTAAAATCTGCCATCTTTGATCTGCTTC
129 ACT-GGCTTCAATGTACTCCACCGTAAT--CAGGGAGGTAAAATCCGCCATCTTCGACCTGC-TC
* * * *
50558276 GCTGCCAAATAC-AGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAG
190 -C--ACAAATACTAGGAAGACAAGATCTGCAATCTTCAATCTATTCCACTG--AAACACAGGAAG
** *
50558340 ATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCACATG-GAGGTAAAATCTGCCATCTTTGA
250 ATAGAACTATCGGCTTCAATGTACTCCACTGTAGTCACA-GAGAGGTAAAATCTGCCATCTTCGA
*
50558404 TCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATA
314 TCTACTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATA
*
50558469 CAGGGAGATAGAGTTATCG
379 CAGAGAGATAGAGTTATCG
*
50558488 GCTTCAATGTACTCCACTGTAGTCACATGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGC
1 GCTTCAATGTACTCCACTGTAGT--CAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGC
50558553 CAAATACAGGAAGGCAAGATCTGCAATCTT
64 CAAATACAGGAAGGCAAGATCTGCAATCTT
50558583 CGATCTACTT
Statistics
Matches: 447, Mismatches: 40, Indels: 20
0.88 0.08 0.04
Matches are distributed among these distances:
398 80 0.18
399 1 0.00
400 58 0.13
402 28 0.06
403 2 0.00
404 34 0.08
406 174 0.39
407 1 0.00
408 69 0.15
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (397 bp):
GCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCA
AATACAGGAAGGCAAGATCTGCAATCTTAAATCTATTCCACTGAAACACAGGGAGATAGAACTAC
TGGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCCGCCATCTTCGACCTGCTCCACAAA
TACTAGGAAGACAAGATCTGCAATCTTCAATCTATTCCACTGAAACACAGGAAGATAGAACTATC
GGCTTCAATGTACTCCACTGTAGTCACAGAGAGGTAAAATCTGCCATCTTCGATCTACTTCGCTG
CCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGAGAGATAGA
GTTATCG
Found at i:50558512 original size:272 final size:270
Alignment explanation
Indices: 50557664--50558604 Score: 1307
Period size: 272 Copynumber: 3.5 Consensus size: 270
50557654 ACTGTTGCCT
* * * * *
50557664 AGGGAGATAGAACTACCAGCTTCAATGTACTCCACCGTAATCA-GTGGGAGGTAAAATCTGCCAT
1 AGGGAGATAGAACTATCGGCTTCAATGTACTCCACTGTAGTCACAT-GGAGGTAAAATCTGCCAT
*
50557728 CTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCACTCTATTCCACTG-
65 CTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGC
***** ** * * * *
50557792 -TTGCCCAGGGAGATAGAACTA-CTGGCTTTAATGTACTCCACCGTAATCAGGGAGGTAAAATCC
130 CAAATACAGGGAGATAGAGTTATC-GGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCT
* * * * * * * ** * *
50557855 GCCATCTTCGACCTGC-TC-C--ACTATTGCTTAGGGAGATAAGATCTGTAATCTTCGATCTATT
194 GCCATCTTTGATCTGCTTCGCTGCCAAATAC--AGGAAGGCAAGATCTGCAATCTTCAATCTATT
*****
50557916 CCACTG--TTGCCC
257 CCACTGCCAAATAC
*
50557928 AGGAAGATAGAACTATCGGCTTCAATGTACTCCACTGTAGTCACA-GAGAGGTAAAATCTGCCAT
1 AGGGAGATAGAACTATCGGCTTCAATGTACTCCACTGTAGTCACATG-GAGGTAAAATCTGCCAT
*
50557992 CTTCGATCTACTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGC
65 CTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGC
*
50558057 CAAATACAGAGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTG
130 CAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTG
*
50558122 CCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTAAATCTATTCCA
195 CCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
50558187 CTGCCAAATAC
260 CTGCCAAATAC
**
50558198 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCACATGGAGGTAAAATCTGCCATC
1 AGGGAGATAGAACTATCGGCTTCAATGTACTCCACTGTAGTCACATGGAGGTAAAATCTGCCATC
*
50558263 TTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCC
66 TTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCC
*
50558328 AAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCACATGGAGGTAAAATCT
131 AAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGT--CAGGGAGGTAAAATCT
50558393 GCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCC
194 GCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCC
50558458 ACTGCCAAATAC
259 ACTGCCAAATAC
**
50558470 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCACATGGAGGTAAAATCTGCCATC
1 AGGGAGATAGAACTATCGGCTTCAATGTACTCCACTGTAGTCACATGGAGGTAAAATCTGCCATC
* *
50558535 TTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCGATCTACTT-CAC-GC
66 TTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTA-TTCCACTGC
50558598 C-AATACA
130 CAAATACA
50558605 TGAAGATAAG
Statistics
Matches: 616, Mismatches: 46, Indels: 24
0.90 0.07 0.03
Matches are distributed among these distances:
263 1 0.00
264 117 0.19
266 63 0.10
267 3 0.00
268 33 0.05
270 180 0.29
271 4 0.01
272 213 0.35
273 2 0.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (270 bp):
AGGGAGATAGAACTATCGGCTTCAATGTACTCCACTGTAGTCACATGGAGGTAAAATCTGCCATC
TTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCC
AAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGC
CATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCAC
TGCCAAATAC
Found at i:50559791 original size:132 final size:132
Alignment explanation
Indices: 50558573--50559756 Score: 1951
Period size: 132 Copynumber: 9.0 Consensus size: 132
50558563 AAGGCAAGAT
* *
50558573 CTGCAATCTTCGATCTACTTCACGCCAATACATGAAGATAAGATCTGCTTTCTTCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
* *
50558638 GCCACCAGTATGGGAAGACAAGATCTGCAATCTTCGATCCACTTCCTATCAATATAGGAAGATAG
66 GCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTCCTACCAATATAGGAAGATAG
50558703 GAC
130 GAC
*
50558706 CTACTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGT-GATCTACTT
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT-TCGATCTACTT
50558770 CGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAG
65 CGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAG
*
50558835 GAT
130 GAC
*
50558838 CTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGT-GATCTACTT
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT-TCGATCTACTT
50558902 CGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAG
65 CGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAG
*
50558967 GAT
130 GAC
* *
50558970 CTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATTTGCTTTCTTCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
*
50559035 GCCACCAATATGGGAAGACAAGATTTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
66 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
50559100 AC
131 AC
* *
50559102 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTCTGCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
* * *
50559167 GCCACCAGTATGGGAAGACAAGATCTACGTCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
66 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
50559232 AC
131 AC
* * * *
50559234 CTGCTATCTTCAATCTACTTCCCGCCAATACATGAAGACAAGATCTGTTTTCTGCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
*
50559299 GCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
66 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
50559364 AC
131 AC
* *
50559366 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTCTGCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
* * *
50559431 GCCACCAGTATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCTACCAATATAGGAAGATAGG
66 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
50559496 AC
131 AC
* *
50559498 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTCTGCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
* * *
50559563 GCCACCAGTATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCTACCAATATAGGAAGATAGG
66 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
50559628 AC
131 AC
50559630 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
* *** * * * *
50559695 -CTACCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATAGGAAGA
66 GCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGA
50559757 CAAGATCTGC
Statistics
Matches: 1008, Mismatches: 39, Indels: 8
0.96 0.04 0.01
Matches are distributed among these distances:
131 23 0.02
132 881 0.87
133 103 0.10
134 1 0.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.28
Consensus pattern (132 bp):
CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
AC
Found at i:50560884 original size:15 final size:15
Alignment explanation
Indices: 50560864--50560909 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
50560854 TGGCCTCTCC
50560864 TTTTTCTTTTTCTTT
1 TTTTTCTTTTTCTTT
*
50560879 TTTTTCTTTTTC-AT
1 TTTTTCTTTTTCTTT
50560893 TTTTTCATTTTTCTTT
1 TTTTTC-TTTTTCTTT
50560909 T
1 T
50560910 CGTTTTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
14 7 0.26
15 18 0.67
16 2 0.07
ACGTcount: A:0.04, C:0.13, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTTCTTTTTCTTT
Found at i:50560918 original size:21 final size:21
Alignment explanation
Indices: 50560879--50560917 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
50560869 CTTTTTCTTT
50560879 TTTTTCTTTTTCATTTTTTCA
1 TTTTTCTTTTTCATTTTTTCA
*
50560900 TTTTTC-TTTTCGTTTTTT
1 TTTTTCTTTTTCATTTTTT
50560918 TTAATGAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.05, C:0.13, G:0.03, T:0.79
Consensus pattern (21 bp):
TTTTTCTTTTTCATTTTTTCA
Found at i:50561375 original size:11 final size:11
Alignment explanation
Indices: 50561361--50561420 Score: 61
Period size: 11 Copynumber: 5.5 Consensus size: 11
50561351 TTTTATTTGG
*
50561361 TTTTTTTT-GT
1 TTTTTTTTCTT
50561371 TTTTTTTTCTT
1 TTTTTTTTCTT
*
50561382 TTTATTTTCTCT
1 TTTTTTTTCT-T
*
50561394 TTTTTTTACTT
1 TTTTTTTTCTT
50561405 TTTCTTTTT-TT
1 TTT-TTTTTCTT
50561416 TTTTT
1 TTTTT
50561421 GCCCCCACTG
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
10 10 0.24
11 19 0.45
12 13 0.31
ACGTcount: A:0.03, C:0.08, G:0.02, T:0.87
Consensus pattern (11 bp):
TTTTTTTTCTT
Found at i:50561378 original size:10 final size:10
Alignment explanation
Indices: 50561361--50561420 Score: 68
Period size: 10 Copynumber: 5.7 Consensus size: 10
50561351 TTTTATTTGG
*
50561361 TTTTTTTTGT
1 TTTTTTTTCT
50561371 TTTTTTTTCT
1 TTTTTTTTCT
50561381 TTTTATTTTCT
1 TTTT-TTTTCT
50561392 CTTTTTTTTACT
1 -TTTTTTTT-CT
50561404 TTTTCTTTT-T
1 TTTT-TTTTCT
50561414 TTTTTTT
1 TTTTTTT
50561421 GCCCCCACTG
Statistics
Matches: 45, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
9 3 0.07
10 18 0.40
11 14 0.31
12 10 0.22
ACGTcount: A:0.03, C:0.08, G:0.02, T:0.87
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:50561383 original size:16 final size:16
Alignment explanation
Indices: 50561361--50561417 Score: 64
Period size: 16 Copynumber: 3.5 Consensus size: 16
50561351 TTTTATTTGG
*
50561361 TTTTTTTTGTTTTT-T
1 TTTTTTTTATTTTTCT
50561376 TTTCTTTTTA-TTTTCT
1 TTT-TTTTTATTTTTCT
50561392 CTTTTTTTTACTTTTTCT
1 -TTTTTTTTA-TTTTTCT
50561410 TTTTTTTT
1 TTTTTTTT
50561418 TTTGCCCCCA
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
15 7 0.19
16 12 0.33
17 11 0.31
18 6 0.17
ACGTcount: A:0.04, C:0.09, G:0.02, T:0.86
Consensus pattern (16 bp):
TTTTTTTTATTTTTCT
Found at i:50561389 original size:23 final size:22
Alignment explanation
Indices: 50561363--50561420 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 22
50561353 TTATTTGGTT
*
50561363 TTTTTTGTTTTTTTTTCTTTTTA
1 TTTTTT-TTTTTTTTACTTTTTA
* *
50561386 TTTTCTCTTTTTTTTACTTTTTC
1 TTTT-TTTTTTTTTTACTTTTTA
50561409 TTTTTTTTTTTT
1 TTTTTTTTTTTT
50561421 GCCCCCACTG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
22 7 0.23
23 22 0.73
24 1 0.03
ACGTcount: A:0.03, C:0.09, G:0.02, T:0.86
Consensus pattern (22 bp):
TTTTTTTTTTTTTTACTTTTTA
Found at i:50564682 original size:15 final size:15
Alignment explanation
Indices: 50564658--50564691 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
50564648 AACAATTACG
* *
50564658 ATAATGCGAGTAAAA
1 ATAATACGAGCAAAA
50564673 ATAATACGAGCAAAA
1 ATAATACGAGCAAAA
50564688 ATAA
1 ATAA
50564692 CAAAAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.59, C:0.09, G:0.15, T:0.18
Consensus pattern (15 bp):
ATAATACGAGCAAAA
Found at i:50565370 original size:38 final size:37
Alignment explanation
Indices: 50565286--50565380 Score: 97
Period size: 38 Copynumber: 2.5 Consensus size: 37
50565276 TATACGTACT
*
50565286 TATACATACTTAAATATATTTTTCATATTTCATAATTC
1 TATACATACTTAAATATATTTTGCATATTT-ATAATTC
* *
50565324 T-TATATACTTACATATATTTATGCATATTT-TACA-TC
1 TATACATACTTAAATATATTT-TGCATATTTATA-ATTC
*
50565360 ATATACATACTTATATATATT
1 -TATACATACTTAAATATATT
50565381 CTTTATATTC
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
36 4 0.08
37 19 0.40
38 25 0.52
ACGTcount: A:0.37, C:0.13, G:0.01, T:0.49
Consensus pattern (37 bp):
TATACATACTTAAATATATTTTGCATATTTATAATTC
Found at i:50571208 original size:24 final size:24
Alignment explanation
Indices: 50571172--50571218 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
50571162 TAATATTAAT
* * *
50571172 ACCAATTGTGCTAAGACTCAATCG
1 ACCAACTGAGCTAAAACTCAATCG
*
50571196 ACCAACTGAGCTAAAACTTAATC
1 ACCAACTGAGCTAAAACTCAATC
50571219 AACTTTTTTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.38, C:0.26, G:0.13, T:0.23
Consensus pattern (24 bp):
ACCAACTGAGCTAAAACTCAATCG
Found at i:50572661 original size:16 final size:17
Alignment explanation
Indices: 50572628--50572662 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
50572618 TATGTAACAC
50572628 ACCCCCATATCATTATTA
1 ACCCCCATAT-ATTATTA
50572646 ACCCCCATAT-TTATTA
1 ACCCCCATATATTATTA
50572662 A
1 A
50572663 TTAATTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
18 10 0.59
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (17 bp):
ACCCCCATATATTATTA
Found at i:50573774 original size:83 final size:83
Alignment explanation
Indices: 50573666--50573864 Score: 213
Period size: 83 Copynumber: 2.4 Consensus size: 83
50573656 TGTCCCATAC
* * * **
50573666 ACATGATCTT-GAATTTGTATTGTAAAAGTAGTGCCTTTTTATGCATAGGGTTTAAGGTTTAGGG
1 ACATGAT-TTCGAATTTGTATAGTAAAAGTAATGCCTTTTTATACATACAGTTTAAGGTTTAGGG
50573730 TTTATTTT-AGTACCCTCAA
65 TTT-TTTTGAGTACCCTCAA
* ** * *
50573749 ACATGATTTCGAATTTGTATAGTAAAAGAAATGTTTTTTTATATATACAGTTTGAGGTTTAGGGT
1 ACATGATTTCGAATTTGTATAGTAAAAGTAATGCCTTTTTATACATACAGTTTAAGGTTTAGGGT
* * *
50573814 TTTTTTGGGTACCTTTAA
66 TTTTTTGAGTACCCTCAA
* * **
50573832 ACATGATCTCAAATTTGTATAACAAAAGTAATG
1 ACATGATTTCGAATTTGTATAGTAAAAGTAATG
50573865 TATTTTATGT
Statistics
Matches: 96, Mismatches: 18, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
82 6 0.06
83 90 0.94
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.42
Consensus pattern (83 bp):
ACATGATTTCGAATTTGTATAGTAAAAGTAATGCCTTTTTATACATACAGTTTAAGGTTTAGGGT
TTTTTTGAGTACCCTCAA
Found at i:50574959 original size:24 final size:25
Alignment explanation
Indices: 50574903--50574959 Score: 82
Period size: 24 Copynumber: 2.3 Consensus size: 25
50574893 TAAAATATAT
50574903 TTAAAAAATTAGTAGTGAGGTTAAC
1 TTAAAAAATTAGTAGTGAGGTTAAC
*
50574928 TCT-TAAAA-TAGTAGTGAGGTTAAC
1 T-TAAAAAATTAGTAGTGAGGTTAAC
50574952 TTAAAAAA
1 TTAAAAAA
50574960 AAAGACTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
23 1 0.04
24 21 0.75
25 5 0.18
26 1 0.04
ACGTcount: A:0.46, C:0.05, G:0.18, T:0.32
Consensus pattern (25 bp):
TTAAAAAATTAGTAGTGAGGTTAAC
Found at i:50587051 original size:17 final size:18
Alignment explanation
Indices: 50587029--50587064 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
50587019 TATTTTTTAA
50587029 TAAAATATTTATAA-TTT
1 TAAAATATTTATAACTTT
*
50587046 TAAAATGTTTATAACTTT
1 TAAAATATTTATAACTTT
50587064 T
1 T
50587065 TTTAAATAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (18 bp):
TAAAATATTTATAACTTT
Found at i:50589511 original size:21 final size:21
Alignment explanation
Indices: 50589487--50589533 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
50589477 CATTGAATCA
*
50589487 TAAACTCTAAACC-TAGAACCT
1 TAAACTCTAAACCATA-AACAT
* *
50589508 TAAATTTTAAACCATAAACAT
1 TAAACTCTAAACCATAAACAT
50589529 TAAAC
1 TAAAC
50589534 CTCGAACATA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
21 19 0.90
22 2 0.10
ACGTcount: A:0.49, C:0.21, G:0.02, T:0.28
Consensus pattern (21 bp):
TAAACTCTAAACCATAAACAT
Found at i:50597053 original size:18 final size:18
Alignment explanation
Indices: 50597016--50597053 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
50597006 TGGTGGGACG
*
50597016 GGTTGAGCTGCAGACTGT
1 GGTTGAGCTGCAGACGGT
50597034 GGTTGAGGCTGC-GACGGT
1 GGTTGA-GCTGCAGACGGT
50597052 GG
1 GG
50597054 AGCGGATCCG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.13, C:0.16, G:0.47, T:0.24
Consensus pattern (18 bp):
GGTTGAGCTGCAGACGGT
Found at i:50609949 original size:32 final size:32
Alignment explanation
Indices: 50609872--50609937 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
50609862 TACACATTGG
50609872 ATTAGAAGGTAAAGTATCGTGAAAATTTTTGT
1 ATTAGAAGGTAAAGTATCGTGAAAATTTTTGT
50609904 ATTAGAAGGTAAAGTATCGTGAAAATTTTTGT
1 ATTAGAAGGTAAAGTATCGTGAAAATTTTTGT
50609936 AT
1 AT
50609938 GTTGCATTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.38, C:0.03, G:0.21, T:0.38
Consensus pattern (32 bp):
ATTAGAAGGTAAAGTATCGTGAAAATTTTTGT
Found at i:50610908 original size:20 final size:21
Alignment explanation
Indices: 50610869--50610908 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
50610859 CGAACATTAG
*
50610869 AAATCAAAAGATTCGATCTTC
1 AAATCAAAAGATACGATCTTC
*
50610890 AAAT-AAAAGATACGTTCTT
1 AAATCAAAAGATACGATCTT
50610909 GGAATAGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.45, C:0.15, G:0.10, T:0.30
Consensus pattern (21 bp):
AAATCAAAAGATACGATCTTC
Found at i:50614154 original size:6 final size:6
Alignment explanation
Indices: 50614145--50614200 Score: 58
Period size: 6 Copynumber: 8.8 Consensus size: 6
50614135 TTGGTCGGAC
* *
50614145 ATATTT ATATTT GTAATTT ATATTT ATATTT ATTTTT AATATTT ATTATTT
1 ATATTT ATATTT AT-ATTT ATATTT ATATTT ATATTT -ATATTT A-TATTT
*
50614196 TTATT
1 ATATT
50614201 AAAAAAGTTG
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
6 27 0.64
7 15 0.36
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (6 bp):
ATATTT
Found at i:50614200 original size:13 final size:13
Alignment explanation
Indices: 50614145--50614195 Score: 52
Period size: 13 Copynumber: 3.9 Consensus size: 13
50614135 TTGGTCGGAC
50614145 ATATTTATATTT-
1 ATATTTATATTTA
*
50614157 GTAATTTATATTT-
1 AT-ATTTATATTTA
*
50614170 ATATTTATTTTTA
1 ATATTTATATTTA
50614183 ATATTTATTATTT
1 ATATTTA-TATTT
50614196 TTATTAAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
12 10 0.31
13 18 0.56
14 4 0.12
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (13 bp):
ATATTTATATTTA
Found at i:50614202 original size:19 final size:19
Alignment explanation
Indices: 50614145--50614202 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
50614135 TTGGTCGGAC
* * *
50614145 ATATTTATATTTGTAATTT
1 ATATTTATATTTATTATTA
*
50614164 ATATTTATATTTATTTTTA
1 ATATTTATATTTATTATTA
50614183 ATATTTATTATTT-TTATTA
1 ATATTTA-TATTTATTATTA
50614202 A
1 A
50614203 AAAAGTTGTG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
19 28 0.85
20 5 0.15
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.66
Consensus pattern (19 bp):
ATATTTATATTTATTATTA
Found at i:50617937 original size:12 final size:12
Alignment explanation
Indices: 50617922--50617946 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
50617912 GAGAGAAGCT
50617922 TTAATTAAATGA
1 TTAATTAAATGA
50617934 TTAATTAAATGA
1 TTAATTAAATGA
50617946 T
1 T
50617947 GGGTGATTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (12 bp):
TTAATTAAATGA
Found at i:50637245 original size:199 final size:200
Alignment explanation
Indices: 50636900--50637301 Score: 716
Period size: 199 Copynumber: 2.0 Consensus size: 200
50636890 CTGTAATTCA
50636900 TGGCAAGACCAAGCACTTCAAGATCAAGTATCATTTTGTAAGGGAGACAGAACTATCAAGGGAAG
1 TGGCAAGACCAAGCACTTCAAGATCAAGTATCATTTTGTAAGGGAGACAGAACTATCAAGGGAAG
*
50636965 TCAATTTGACTCACTGCTGTTCGAAGGTTCAGCTTGCAGACATTCTGACCAAGCCACTAGCTAAT
66 TCAATTTGACTCACTGCTATTCGAAGGTTCAGCTTGCAGACATTCTGACCAAGCCACTAGCTAAT
* * * *
50637030 GCAAGGTTTGAGTATTTGAGGAAAAGAATTGGCGTTTGCTGCTTTGTGGCTAAGGAGGAGTGTTG
131 GCAAGGTTTGAGTATTTGAGGAAAAGAATTGGAGTCTACTGCTTTGTGGCCAAGGAGGAGTGTTG
50637095 AAAGT
196 AAAGT
50637100 TGGC-AGACCAAGCACTTCAAGATCAAGTATCATTTTGTAAGGGAGACAGAACTATCAAGGGAAG
1 TGGCAAGACCAAGCACTTCAAGATCAAGTATCATTTTGTAAGGGAGACAGAACTATCAAGGGAAG
* *
50637164 TCAATTTGACTCACTGCTATTCGGAGGTTCAGCTTGCAGACATTCTGACCAAGCCACTAGTTAAT
66 TCAATTTGACTCACTGCTATTCGAAGGTTCAGCTTGCAGACATTCTGACCAAGCCACTAGCTAAT
*
50637229 GCAAGGTTTGAGTATTTGAGGAAAGGAATTGGAGTCTACTGCTTTGTGGCCAAGGAGGAGTGTTG
131 GCAAGGTTTGAGTATTTGAGGAAAAGAATTGGAGTCTACTGCTTTGTGGCCAAGGAGGAGTGTTG
*
50637294 AAATT
196 AAAGT
50637299 TGG
1 TGG
50637302 AAGCAATGCA
Statistics
Matches: 193, Mismatches: 9, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
199 189 0.98
200 4 0.02
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (200 bp):
TGGCAAGACCAAGCACTTCAAGATCAAGTATCATTTTGTAAGGGAGACAGAACTATCAAGGGAAG
TCAATTTGACTCACTGCTATTCGAAGGTTCAGCTTGCAGACATTCTGACCAAGCCACTAGCTAAT
GCAAGGTTTGAGTATTTGAGGAAAAGAATTGGAGTCTACTGCTTTGTGGCCAAGGAGGAGTGTTG
AAAGT
Found at i:50641926 original size:30 final size:31
Alignment explanation
Indices: 50641892--50641958 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
50641882 TATTTATAAA
* *
50641892 TTTTAAA-AAATTAAATTAAAATTTTATTAT
1 TTTTAAAGAAATCAAAGTAAAATTTTATTAT
*
50641922 TTTTAAAGATATCAAAGTAAAATTTTATTAT
1 TTTTAAAGAAATCAAAGTAAAATTTTATTAT
*
50641953 TATTAA
1 TTTTAA
50641959 TTTAAATTTC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 7 0.22
31 25 0.78
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.48
Consensus pattern (31 bp):
TTTTAAAGAAATCAAAGTAAAATTTTATTAT
Found at i:50643473 original size:11 final size:11
Alignment explanation
Indices: 50643459--50643517 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
50643449 TAATATCTAA
* *
50643459 AAAATAACAAC
1 AAAATAATAGC
50643470 AAAATAATAGC
1 AAAATAATAGC
*
50643481 AATATAATAGC
1 AAAATAATAGC
* *
50643492 AAAATGACAGC
1 AAAATAATAGC
* *
50643503 AAAACAATAAC
1 AAAATAATAGC
50643514 AAAA
1 AAAA
50643518 AAGAGTAAAA
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 38 1.00
ACGTcount: A:0.66, C:0.14, G:0.07, T:0.14
Consensus pattern (11 bp):
AAAATAATAGC
Found at i:50645774 original size:26 final size:26
Alignment explanation
Indices: 50645716--50645774 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
50645706 TCTAACAAAG
* *
50645716 ATGTTTATATTTAAAAATAAGTAATT
1 ATGTTTAAATTAAAAAATAAGTAATT
* *
50645742 TTGTTTAAATTAAAAAATAAATTAATT
1 ATGTTTAAATTAAAAAAT-AAGTAATT
50645769 AT-TTTA
1 ATGTTTA
50645775 TTAAAATTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 19 0.70
27 8 0.30
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (26 bp):
ATGTTTAAATTAAAAAATAAGTAATT
Found at i:50648573 original size:6 final size:6
Alignment explanation
Indices: 50648536--50648578 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
50648526 CCAAATACAC
* *
50648536 CAGTAAA CAGTAA TCAGTAA CGGTAG CAGTAA CAGTAA CAGTA
1 CAGT-AA CAGTAA -CAGTAA CAGTAA CAGTAA CAGTAA CAGTA
50648579 TTCAACACAC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
6 21 0.68
7 10 0.32
ACGTcount: A:0.44, C:0.16, G:0.21, T:0.19
Consensus pattern (6 bp):
CAGTAA
Found at i:50648626 original size:45 final size:45
Alignment explanation
Indices: 50648562--50648694 Score: 200
Period size: 45 Copynumber: 3.0 Consensus size: 45
50648552 GTAACGGTAG
* *
50648562 CAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAATCTGTAA
1 CAGTAACAGTAACAGTATTCGACACACAAAGTGCTGAATCAGTAA
*
50648607 CAGTAACAGTAACAGTATTCGACACACAAAGTG-TCGAATCGGTAA
1 CAGTAACAGTAACAGTATTCGACACACAAAGTGCT-GAATCAGTAA
*
50648652 CAGTAACAGTAACAG--TTCGACACACAAAGTGCCGAATCAGTAA
1 CAGTAACAGTAACAGTATTCGACACACAAAGTGCTGAATCAGTAA
50648695 GCCGGCAAAT
Statistics
Matches: 82, Mismatches: 4, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
43 25 0.30
44 1 0.01
45 56 0.68
ACGTcount: A:0.41, C:0.21, G:0.18, T:0.20
Consensus pattern (45 bp):
CAGTAACAGTAACAGTATTCGACACACAAAGTGCTGAATCAGTAA
Found at i:50648658 original size:51 final size:49
Alignment explanation
Indices: 50648547--50648694 Score: 147
Period size: 45 Copynumber: 3.2 Consensus size: 49
50648537 AGTAAACAGT
*
50648547 AATCAGTAACGGTAGCAGTAACAGTAACAGTATTCAACACACAAAGTGCTG
1 AATC-GTAAC-GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTG
*
50648598 AATC-T---GTAACAGTAACAGTAACAGTATTCGACACACAAAGTG-TCG
1 AATCGTAACGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCT-G
* *
50648643 AATCG----GTAACAGTAACAGTAACAG--TTCGACACACAAAGTGCCG
1 AATCGTAACGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTG
50648686 AATCAGTAA
1 AATC-GTAA
50648695 GCCGGCAAAT
Statistics
Matches: 87, Mismatches: 3, Indels: 18
0.81 0.03 0.17
Matches are distributed among these distances:
43 21 0.24
44 2 0.02
45 59 0.68
49 1 0.01
51 4 0.05
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (49 bp):
AATCGTAACGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTG
Found at i:50652258 original size:13 final size:13
Alignment explanation
Indices: 50652240--50652271 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
50652230 AATTCATCTT
50652240 CATTTCTTCTCTC
1 CATTTCTTCTCTC
50652253 CATTTCTTCTCTC
1 CATTTCTTCTCTC
50652266 CATTTC
1 CATTTC
50652272 GGTTCCTGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.09, C:0.38, G:0.00, T:0.53
Consensus pattern (13 bp):
CATTTCTTCTCTC
Found at i:50655395 original size:210 final size:210
Alignment explanation
Indices: 50655023--50656268 Score: 1601
Period size: 210 Copynumber: 5.9 Consensus size: 210
50655013 TACGGGACAA
50655023 TGTTCATCTCTTGAAAAGCTTAGCATTTTCGATTGC-AAAAACTTAAGCAAGATTGGAGACGGAT
1 TGTTCATCTCTTGAAAAGCTTAGCATTTTCGATTGCGAAAAA-TTAAGCAAGATTGGAGACGGAT
*
50655087 TATCTACCTCCACTTGTCTCAAAGAATTAGCTCTAAAGAATTGTCCTAATTTAAGTTGGATTCCA
65 TATCTACCTCCACTTGTCTCAAAGAATTAGGTCTAAAGAATTGTCCTAATTTAAGTTGGATTCCA
* *
50655152 AATTTGGAAGGATTTTCCTCTCTTCAAAATCTGTCAATTGATAGCTGCAATGAATTGGAAGCTCT
130 AATTTGGAAGGATTTTCCTCTCTTCAAAATCTGTCAATTGATAGCTGCAACGAATTGGAAGTTCT
50655217 TCCAATAACTGGGAGG
195 TCCAATAACTGGGAGG
* * * *
50655233 TGTTCATCTCTTGAAAAGCTTAGCATTCTCGATTGCGAGAAATTAAGAAAGATTGG-GTACGGTT
1 TGTTCATCTCTTGAAAAGCTTAGCATTTTCGATTGCGAAAAATTAAGCAAGATTGGAG-ACGGAT
* ** *** * **
50655297 TATCTACCTCCACTTGTCTTAAAGAATTAGAG-CTATTGTGGTGTCCTAATTTAACTTCCATTCC
65 TATCTACCTCCACTTGTCTCAAAGAATTAG-GTCTAAAGAATTGTCCTAATTTAAGTTGGATTCC
* * * * * *
50655361 AAAATTGGAAGGATTTTCGTCTATTCAGAATCTGTCAATTGATAGCTGCATCAAATTGGAAGTTC
129 AAATTTGGAAGGATTTTCCTCTCTTCAAAATCTGTCAATTGATAGCTGCAACGAATTGGAAGTTC
* * *
50655426 TT-GAGATATC-CGGAGG
194 TTCCA-ATAACTGGGAGG
* * * * * * ** *
50655442 ATGTTCAGT-TTTTGTAAAGCTTAGCATTTCCAAGTG-TAAAACATTATCCAAGATTGGAGACAG
1 -TGTTCA-TCTCTTGAAAAGCTTAGCATTTTCGATTGCGAAAA-ATTAAGCAAGATTGGAGACGG
* * ** *
50655505 ATTATTTACCTACACTTGTCTCAAAGAATTAAATCTAGAAG-ATTGTCCTAATTTAAGTTCGATT
63 ATTATCTACCTCCACTTGTCTCAAAGAATTAGGTCTA-AAGAATTGTCCTAATTTAAGTTGGATT
* * * * * * *
50655569 CCAAATTTGAAAGGATTTTCGTGTCTCCAAAATCTGTCAATTCATACCTGCAACGGATTGGAAGT
127 CCAAATTTGGAAGGATTTTCCTCTCTTCAAAATCTGTCAATTGATAGCTGCAACGAATTGGAAGT
* * * *
50655634 TCTTCCGAT-ATTTGGAGCA
192 TCTTCCAATAACTGGGAG-G
* * *
50655653 TGCTCATCTCTTGAAAAGCTTAACATTTTCGGTTGCGAAAAATTAAGCAAGATTGGAGACGGATT
1 TGTTCATCTCTTGAAAAGCTTAGCATTTTCGATTGCGAAAAATTAAGCAAGATTGGAGACGGATT
**
50655718 ATCTACCTCCACTTGTCTCAAAGAATTAGGTCTAAAGAATTGTCCTAATTTAAGTTTAATTCCAA
66 ATCTACCTCCACTTGTCTCAAAGAATTAGGTCTAAAGAATTGTCCTAATTTAAGTTGGATTCCAA
* * * * * *
50655783 ATTTAGAAGGATTTTCCTATCTTCAAAATATCTCGATTGATAGCTGCAACGGATTGGAAGTTCTT
131 ATTTGGAAGGATTTTCCTCTCTTCAAAATCTGTCAATTGATAGCTGCAACGAATTGGAAGTTCTT
* *
50655848 CCAATAATTGGAAGG
196 CCAATAACTGGGAGG
* * *
50655863 TGTTCATCTCTCGAAAAGCTTAGCATTTCCGATTGCAAAAAATTAAGCAAGATTGGAGACGGATT
1 TGTTCATCTCTTGAAAAGCTTAGCATTTTCGATTGCGAAAAATTAAGCAAGATTGGAGACGGATT
* *
50655928 ATCTACCTCTACTTGTCTCAGAGAATTAGGTCTAAAGAATTGTCCTAATTTAAGTTGGATTCCAA
66 ATCTACCTCCACTTGTCTCAAAGAATTAGGTCTAAAGAATTGTCCTAATTTAAGTTGGATTCCAA
50655993 ATTTGGAAGGATTTTCCTCTCTTCAAAATCTGTCAATTGATAGCTGCAACGAATTGGAAGTTCTT
131 ATTTGGAAGGATTTTCCTCTCTTCAAAATCTGTCAATTGATAGCTGCAACGAATTGGAAGTTCTT
* *
50656058 CCGATAACTGGAAGG
196 CCAATAACTGGGAGG
* * * * * **
50656073 TGTTCATCTCTTGAAAAGCTCAGCATTTTCTATTGTGAAAAACTAAGAAAGATTGGAGACAAATT
1 TGTTCATCTCTTGAAAAGCTTAGCATTTTCGATTGCGAAAAATTAAGCAAGATTGGAGACGGATT
* * *
50656138 ATCTACCTTCATTTGTCTCAAGGAATTAGGTCTAAAGAATTGTCCTAATTTAAGTTGGATTCCAA
66 ATCTACCTCCACTTGTCTCAAAGAATTAGGTCTAAAGAATTGTCCTAATTTAAGTTGGATTCCAA
* * *
50656203 ATTTGGAAGGATTTTCCTCTCTTCAAGATCTGTCAATTGATAGCTGCAATGAATTTGAAGTTCTT
131 ATTTGGAAGGATTTTCCTCTCTTCAAAATCTGTCAATTGATAGCTGCAACGAATTGGAAGTTCTT
50656268 C
196 C
50656269 TGGTACAAGA
Statistics
Matches: 885, Mismatches: 134, Indels: 34
0.84 0.13 0.03
Matches are distributed among these distances:
209 14 0.02
210 854 0.96
211 17 0.02
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (210 bp):
TGTTCATCTCTTGAAAAGCTTAGCATTTTCGATTGCGAAAAATTAAGCAAGATTGGAGACGGATT
ATCTACCTCCACTTGTCTCAAAGAATTAGGTCTAAAGAATTGTCCTAATTTAAGTTGGATTCCAA
ATTTGGAAGGATTTTCCTCTCTTCAAAATCTGTCAATTGATAGCTGCAACGAATTGGAAGTTCTT
CCAATAACTGGGAGG
Found at i:50656517 original size:144 final size:144
Alignment explanation
Indices: 50656279--50656770 Score: 619
Period size: 144 Copynumber: 3.4 Consensus size: 144
50656269 TGGTACAAGA
* * * * *
50656279 GTTTCAAGGAATAGAAGGCTTTCCTGAGTGGTTGGGAAATCTCTCTTCTCTATGGCGTCTA-AGT
1 GTTTCAAGAAATAGAAGCCTTGCCAGAGTGGTTGGGAAATCTCTCTTCTCTAAGGCGTCTATA-T
* *
50656343 TTGATTGGTTTTGGAAAGCTAAAGAGTTTTCCTCACCAACTTCAACACCTCACTGCCCTTGAAGA
65 TTGAGTGGTTTTGGAAAGCTAAAGAGTTTTCCTCACCAACTTCAACTCCTCACTGCCCTTGAAGA
50656408 TTTGACTATGTCGGG
130 TTTGACTATGTCGGG
* * *
50656423 GTTTCATGAAATAGAAGCCTTGCCAGAGTGGCTGGGAAATCTCTCTTCTCTAAAGCGTCTATATT
1 GTTTCAAGAAATAGAAGCCTTGCCAGAGTGGTTGGGAAATCTCTCTTCTCTAAGGCGTCTATATT
* * * ** * * *
50656488 TGAGTGGTTTTCGAAAGTTAAAGAGTTTTCCTCACCAACTTCAATTCCTTTCTACCCTTAAATAT
66 TGAGTGGTTTTGGAAAGCTAAAGAGTTTTCCTCACCAACTTCAACTCCTCACTGCCCTTGAAGAT
** *
50656553 TTGACTATAG-AAGA
131 TTGACTAT-GTCGGG
* * * * * * **
50656567 GTTTCAAGGAATAGAAGCCTTTCCGGAGTGGTTGGGAAAGCTTTCTTCGCTAAGGTATCTATATT
1 GTTTCAAGAAATAGAAGCCTTGCCAGAGTGGTTGGGAAATCTCTCTTCTCTAAGGCGTCTATATT
** * *
50656632 TGAGTGGTTTTGGAAAGCTAAAGAGCCTTCCTCACCAACTTCAACTCCCCAGTGCCCTTGAAGAT
66 TGAGTGGTTTTGGAAAGCTAAAGAGTTTTCCTCACCAACTTCAACTCCTCACTGCCCTTGAAGAT
*
50656697 TTGACTATGTCGAG
131 TTGACTATGTCGGG
* * *
50656711 GTTTCATGAAATAGAAGCCTTGCCAGAGTTGTTGGGAAATCTCTCTTCCCTAAGGCGTCT
1 GTTTCAAGAAATAGAAGCCTTGCCAGAGTGGTTGGGAAATCTCTCTTCTCTAAGGCGTCT
50656771 GCATATCAAT
Statistics
Matches: 287, Mismatches: 58, Indels: 6
0.82 0.17 0.02
Matches are distributed among these distances:
143 1 0.00
144 284 0.99
145 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (144 bp):
GTTTCAAGAAATAGAAGCCTTGCCAGAGTGGTTGGGAAATCTCTCTTCTCTAAGGCGTCTATATT
TGAGTGGTTTTGGAAAGCTAAAGAGTTTTCCTCACCAACTTCAACTCCTCACTGCCCTTGAAGAT
TTGACTATGTCGGG
Found at i:50670997 original size:25 final size:25
Alignment explanation
Indices: 50670963--50671063 Score: 184
Period size: 25 Copynumber: 4.0 Consensus size: 25
50670953 ATATTTATGG
50670963 AAAGTCAAAGATATGGGTATCAAAT
1 AAAGTCAAAGATATGGGTATCAAAT
50670988 AAAGTCAAAGATATGGGTATCAAAT
1 AAAGTCAAAGATATGGGTATCAAAT
50671013 AAAGTCAAAGATATGGGTATCAAAT
1 AAAGTCAAAGATATGGGTATCAAAT
* *
50671038 AAAGTCAAAAATATGGGTATTAAAT
1 AAAGTCAAAGATATGGGTATCAAAT
50671063 A
1 A
50671064 TTAGAAAGTC
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 74 1.00
ACGTcount: A:0.50, C:0.07, G:0.19, T:0.25
Consensus pattern (25 bp):
AAAGTCAAAGATATGGGTATCAAAT
Found at i:50673257 original size:21 final size:22
Alignment explanation
Indices: 50673217--50673258 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
50673207 TTTTATTGTG
*
50673217 GTTTTTACCCTCAAGTCCCTTT
1 GTTTTTACCCTCAAGCCCCTTT
50673239 GTTTTTACCCTCAA-CCCCTT
1 GTTTTTACCCTCAAGCCCCTT
50673259 GCTTCAAGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.14, C:0.36, G:0.07, T:0.43
Consensus pattern (22 bp):
GTTTTTACCCTCAAGCCCCTTT
Found at i:50674021 original size:15 final size:16
Alignment explanation
Indices: 50673985--50674022 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
50673975 TTATAGTTTG
*
50673985 AATTTGTTCTAGCTAGT
1 AATTTGTTCTA-CTAAT
50674002 AATTTGTTCTA-TAAT
1 AATTTGTTCTACTAAT
50674017 AATTTG
1 AATTTG
50674023 GTGATACATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 9 0.45
17 11 0.55
ACGTcount: A:0.29, C:0.08, G:0.13, T:0.50
Consensus pattern (16 bp):
AATTTGTTCTACTAAT
Found at i:50675377 original size:10 final size:11
Alignment explanation
Indices: 50675351--50675376 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
50675341 AAAAATTTAA
50675351 AAAAATATTTT
1 AAAAATATTTT
50675362 AAAAATATTTT
1 AAAAATATTTT
50675373 AAAA
1 AAAA
50675377 TTAAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:50676376 original size:18 final size:21
Alignment explanation
Indices: 50676336--50676391 Score: 55
Period size: 21 Copynumber: 2.7 Consensus size: 21
50676326 TAATGTTTAC
*
50676336 ATTATAATATTATTATTTATT
1 ATTATAATATTATAATTTATT
50676357 ATTATAA-ATT-TAATTTTTATGT
1 ATTATAATATTATAA--TTTAT-T
50676379 ATTATAA-ATTATA
1 ATTATAATATTATA
50676392 TAATATATGA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
19 2 0.07
20 3 0.10
21 12 0.40
22 11 0.37
23 2 0.07
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (21 bp):
ATTATAATATTATAATTTATT
Found at i:50676395 original size:25 final size:24
Alignment explanation
Indices: 50676342--50676395 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 24
50676332 TTACATTATA
*
50676342 ATATTATTATTTATTATTATAAAT
1 ATATAATTATTTATTATTATAAAT
50676366 -T-TAATT-TTTATGTATTATAAATT
1 ATATAATTATTTAT-TATTATAAA-T
50676389 ATATAAT
1 ATATAAT
50676396 ATATGAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 5 0.20
22 13 0.52
23 2 0.08
24 1 0.04
25 4 0.16
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (24 bp):
ATATAATTATTTATTATTATAAAT
Found at i:50676836 original size:6 final size:6
Alignment explanation
Indices: 50676825--50676865 Score: 82
Period size: 6 Copynumber: 6.8 Consensus size: 6
50676815 TCATTCCACA
50676825 GCATCT GCATCT GCATCT GCATCT GCATCT GCATCT GCATC
1 GCATCT GCATCT GCATCT GCATCT GCATCT GCATCT GCATC
50676866 ATCCATCTTC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.17, C:0.34, G:0.17, T:0.32
Consensus pattern (6 bp):
GCATCT
Found at i:50677678 original size:31 final size:31
Alignment explanation
Indices: 50677638--50677703 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
50677628 CTTAACAATC
*
50677638 TAGTGACTTAAATAAAAACTTTCGAATAGTT
1 TAGTAACTTAAATAAAAACTTTCGAATAGTT
* *
50677669 TAGTAACTTAAATGAAAACTTTTGAATAGTT
1 TAGTAACTTAAATAAAAACTTTCGAATAGTT
50677700 TAGT
1 TAGT
50677704 GATCATTTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.41, C:0.08, G:0.14, T:0.38
Consensus pattern (31 bp):
TAGTAACTTAAATAAAAACTTTCGAATAGTT
Found at i:50680062 original size:46 final size:46
Alignment explanation
Indices: 50679988--50680172 Score: 264
Period size: 46 Copynumber: 4.0 Consensus size: 46
50679978 CATGGTAAAG
*
50679988 TGTGGAACGTAGGTATGGCATTTCAGTAAAGAAAACCATACTGAGT
1 TGTGGAACGTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGT
** *
50680034 TGTGGAACGTAAATATGGTATTAT-AGTAAAGAAAACCATATTGAGT
1 TGTGGAACGTAGGTATGGTATT-TCAGTAAAGAAAACCATACTGAGT
* *
50680080 TGTGGAACGTAGGTATGATATTTCAGTAAAGAAAACCATACTAAGT
1 TGTGGAACGTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGT
* * * *
50680126 TGTGAAAAGTAGGTATGGTATTTCAGTGAAGAAAATCATACTGAGT
1 TGTGGAACGTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGT
50680172 T
1 T
50680173 ATAGCATTGT
Statistics
Matches: 122, Mismatches: 15, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
45 1 0.01
46 120 0.98
47 1 0.01
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.29
Consensus pattern (46 bp):
TGTGGAACGTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGT
Found at i:50680920 original size:21 final size:19
Alignment explanation
Indices: 50680869--50680921 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 19
50680859 ATTAACATTT
*
50680869 TTTAATGTTTATATTATAA
1 TTTAATTTTTATATTATAA
50680888 TATT-ATTATTTACTATTATAGA
1 T-TTAATT-TTTA-TATTATA-A
50680910 TTTAATTTTTAT
1 TTTAATTTTTAT
50680922 GTATTATAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 9
0.74 0.03 0.24
Matches are distributed among these distances:
19 3 0.11
20 7 0.25
21 13 0.46
22 5 0.18
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (19 bp):
TTTAATTTTTATATTATAA
Found at i:50681381 original size:6 final size:6
Alignment explanation
Indices: 50681370--50681404 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
50681360 TCATTCCAAA
50681370 GCATCT GCATCT GCATCT GCATCT GCATCT GCATC
1 GCATCT GCATCT GCATCT GCATCT GCATCT GCATC
50681405 ATCCATCTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.17, C:0.34, G:0.17, T:0.31
Consensus pattern (6 bp):
GCATCT
Found at i:50682141 original size:13 final size:13
Alignment explanation
Indices: 50682123--50682147 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50682113 ATATTCATCC
50682123 AATCATATGTTAT
1 AATCATATGTTAT
50682136 AATCATATGTTA
1 AATCATATGTTA
50682148 CTACATGTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (13 bp):
AATCATATGTTAT
Found at i:50682247 original size:8 final size:9
Alignment explanation
Indices: 50682207--50682266 Score: 68
Period size: 9 Copynumber: 6.6 Consensus size: 9
50682197 AAAATTACAA
50682207 AAAAAGTTAT
1 AAAAA-TTAT
*
50682217 TAAAATTATT
1 AAAAATTA-T
* *
50682227 TAAAA-TAG
1 AAAAATTAT
50682235 AAAAATTAT
1 AAAAATTAT
50682244 AAAAATTAT
1 AAAAATTAT
50682253 AAAAATTAT
1 AAAAATTAT
50682262 AAAAA
1 AAAAA
50682267 CTAACATAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
8 4 0.09
9 30 0.68
10 10 0.23
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (9 bp):
AAAAATTAT
Found at i:50683286 original size:54 final size:56
Alignment explanation
Indices: 50683205--50683319 Score: 180
Period size: 54 Copynumber: 2.1 Consensus size: 56
50683195 ATATTTTATT
*
50683205 AAAAGAAAAAAATTTAATATAAAAAATTCATTGGCACCTGTCAGAGAGGCGCCATTA
1 AAAAGAAAAAAA-TTAATATAAAAAATTCATTAGCACCTGTCAGAGAGGCGCCATTA
* *
50683262 AAAAG-AAAAAA-TAATATAAAAAATTCATTAGCGCCTGTCAGATAGGCGCCATTA
1 AAAAGAAAAAAATTAATATAAAAAATTCATTAGCACCTGTCAGAGAGGCGCCATTA
50683316 AAAA
1 AAAA
50683320 AACATACCAT
Statistics
Matches: 55, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
54 44 0.80
56 6 0.11
57 5 0.09
ACGTcount: A:0.50, C:0.14, G:0.15, T:0.22
Consensus pattern (56 bp):
AAAAGAAAAAAATTAATATAAAAAATTCATTAGCACCTGTCAGAGAGGCGCCATTA
Found at i:50684625 original size:31 final size:31
Alignment explanation
Indices: 50684590--50684652 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
50684580 AACAATCTAA
50684590 TAACTTAAATAAAAACTTTCGAATAGTTTAG
1 TAACTTAAATAAAAACTTTCGAATAGTTTAG
* *
50684621 TAACTTAAATGAAAACTTTTGAATAGTTTAG
1 TAACTTAAATAAAAACTTTCGAATAGTTTAG
50684652 T
1 T
50684653 GATCATTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.43, C:0.08, G:0.11, T:0.38
Consensus pattern (31 bp):
TAACTTAAATAAAAACTTTCGAATAGTTTAG
Found at i:50690448 original size:210 final size:209
Alignment explanation
Indices: 50690086--50692087 Score: 3348
Period size: 210 Copynumber: 9.6 Consensus size: 209
50690076 TAACGGGACA
** * * *
50690086 ATGTTCATCTCTTGAAAAGCTTCACATTTCCAGTTGTGGAAAATTAAGCAAGATTGGAGATGGAT
1 ATGTTCATCTCTTGAAAAGCTTTGCATTTTCGGTTGTGAAAAATTAAGCAAGATTGGAGATGGAT
**
50690151 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGATGATTGTCCTGATTTAAGTTCGATCCCA
66 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGACAATTGTCCTGATTTAAGTTCGATCCCA
* **
50690216 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCAAGGGTGCCTCAAATTGGAAGTTCT
131 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTGAA-GGTGCAACAAATTGGAAGTTCT
50690281 TCCAATAACTGGAGG
195 TCCAATAACTGGAGG
* * *
50690296 ATGTTCATCTCTTGAAAAGCTTCGCATTGTCGGTTGTGGAAAATTAAGCAAGATTGGAGATGGAT
1 ATGTTCATCTCTTGAAAAGCTTTGCATTTTCGGTTGTGAAAAATTAAGCAAGATTGGAGATGGAT
*
50690361 TATCTACCACCACTTGTCTCAAAGAATTAGATCTAGACAATTGTCCTGATTTAAGTTCGATCCCA
66 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGACAATTGTCCTGATTTAAGTTCGATCCCA
*
50690426 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGTAGGTGCAACAAATTGGAAGTTCT
131 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTT-GAAGGTGCAACAAATTGGAAGTTCT
50690491 TCCAATAACTGGAGG
195 TCCAATAACTGGAGG
*
50690506 ATGTTCATCTCTTGAAAAGCTTTGCATTTTGGGTTGTGAAAAATTAAGCAAGATTGGAGATGGAT
1 ATGTTCATCTCTTGAAAAGCTTTGCATTTTCGGTTGTGAAAAATTAAGCAAGATTGGAGATGGAT
*
50690571 TATCTACCACCACTTGTCTCAAAGAATTAGATCTAGACAATTGTCCTGATTTAAGTTCGATCCCA
66 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGACAATTGTCCTGATTTAAGTTCGATCCCA
*
50690636 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGTAGGTGCAACAAATTGGAAGTTCT
131 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTT-GAAGGTGCAACAAATTGGAAGTTCT
50690701 TCCAATAACTGGAGG
195 TCCAATAACTGGAGG
*
50690716 ATGTTCATCTCTTGAAAAGCTTTGCATTTTGGGTTGTGAAAAATTAAGCAAGATTGGAGATGGAT
1 ATGTTCATCTCTTGAAAAGCTTTGCATTTTCGGTTGTGAAAAATTAAGCAAGATTGGAGATGGAT
** *
50690781 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTACG-GTATTGTTCTGATTTAAGTTCGATCCC
66 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTA-GACAATTGTCCTGATTTAAGTTCGATCCC
* * *
50690845 AAATTTGGAAGGATTTTCCTCTCTTCAAAATCTGTCAGTTAAACGGTGCGACAAATTGGAAGTTC
130 AAATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTGAA-GGTGCAACAAATTGGAAGTTC
50690910 TTCCAATAACTGGAGG
194 TTCCAATAACTGGAGG
* * *
50690926 ATGTTCATCTCTTGAAAAGCTTCGCATTGTCGGTTGTGGAAAATTAAGCAAGATTGGAGATGGAT
1 ATGTTCATCTCTTGAAAAGCTTTGCATTTTCGGTTGTGAAAAATTAAGCAAGATTGGAGATGGAT
50690991 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGACAATTGTCCTGATTTAAGTTCGATCCCA
66 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGACAATTGTCCTGATTTAAGTTCGATCCCA
* *
50691056 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTAGGAAGCTGCAACAAATTGGAAGTTCT
131 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGT-TGAAGGTGCAACAAATTGGAAGTTCT
50691121 TCCAATAACTGGAGG
195 TCCAATAACTGGAGG
* *
50691136 ATGTTCATCTCTTGAAAAGCTTTGCATTTTGGGTTGTAAAAAATTAAGCAAGATTGGAGATGGAT
1 ATGTTCATCTCTTGAAAAGCTTTGCATTTTCGGTTGTGAAAAATTAAGCAAGATTGGAGATGGAT
* **
50691201 TATCTACCTCCACTTGTCTCAAAAAATTAGATCTATG-CGGTTGTCCTGATTTAAGTTCGATCCC
66 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTA-GACAATTGTCCTGATTTAAGTTCGATCCC
*
50691265 AAATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTGGAAGCTGCAACAAATTGGAAGTTC
130 AAATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTT-GAAGGTGCAACAAATTGGAAGTTC
50691330 TTCCAATAACTGGAGG
194 TTCCAATAACTGGAGG
* * *
50691346 ATGTTCATCTCTTGAAAAGCTTCGCATTTGCGATTGTGAAAAATTAAGCAAGATT-G-GA-GGAT
1 ATGTTCATCTCTTGAAAAGCTTTGCATTTTCGGTTGTGAAAAATTAAGCAAGATTGGAGATGGAT
50691408 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGACAATTGTCCTGATTTAAGTTCGATCCCA
66 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGACAATTGTCCTGATTTAAGTTCGATCCCA
* *
50691473 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTAGGAAGCTGCAACAAATTGGAAGTTCT
131 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGT-TGAAGGTGCAACAAATTGGAAGTTCT
50691538 TCCAATAACTGGAGG
195 TCCAATAACTGGAGG
* * *
50691553 ATGTTCATCTCTTGAAAAGCTTTGGATTTTGGGTTGTAAAAAATTAAGCAAGATTGGAGATGGAT
1 ATGTTCATCTCTTGAAAAGCTTTGCATTTTCGGTTGTGAAAAATTAAGCAAGATTGGAGATGGAT
* * **
50691618 TATCTACCTCCACTTGTCTCAAAAAATTAGATCTATACGGTTGTCCTGATTTAAGTTCGATCCCA
66 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGACAATTGTCCTGATTTAAGTTCGATCCCA
*
50691683 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTGGAAGCTGCAACAAATTGGAAGTTCT
131 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTT-GAAGGTGCAACAAATTGGAAGTTCT
50691748 TCCAATAACTGGAGG
195 TCCAATAACTGGAGG
* *
50691763 ATGTTCATCTCTTGAAATGCTTTGCATTTTGGGTTGTGAAAAATTAAGCAAGATTGGAGATGGAT
1 ATGTTCATCTCTTGAAAAGCTTTGCATTTTCGGTTGTGAAAAATTAAGCAAGATTGGAGATGGAT
*
50691828 TATCTACCTCCACTTGTCTCAAAGAATTATATCTAGACAATTGTCCTGATTTAAGTTCGATCCCA
66 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGACAATTGTCCTGATTTAAGTTCGATCCCA
* * *
50691893 AATTTGGAAGGATTTTCCTCTCTTCAAAATCTGTCAGTTAAACGGTGCGACAAATTGGAAGTTCT
131 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTGAA-GGTGCAACAAATTGGAAGTTCT
50691958 TCCAATAACTGGAGG
195 TCCAATAACTGGAGG
50691973 ATGTTCATCTCTTGAAAAGCTTTGCATTTTCGGTTGTGAAAAATTAAGCAAGATTGGAGATGGAT
1 ATGTTCATCTCTTGAAAAGCTTTGCATTTTCGGTTGTGAAAAATTAAGCAAGATTGGAGATGGAT
* **
50692038 TATCTACCTCCACTTGTCTCAAAAAATTAGATCTAGACGGTTGTCCTGAT
66 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGACAATTGTCCTGAT
50692088 CTGATATGGA
Statistics
Matches: 1696, Mismatches: 82, Indels: 28
0.94 0.05 0.02
Matches are distributed among these distances:
206 1 0.00
207 191 0.11
208 3 0.00
209 7 0.00
210 1489 0.88
211 5 0.00
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.34
Consensus pattern (209 bp):
ATGTTCATCTCTTGAAAAGCTTTGCATTTTCGGTTGTGAAAAATTAAGCAAGATTGGAGATGGAT
TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGACAATTGTCCTGATTTAAGTTCGATCCCA
AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTGAAGGTGCAACAAATTGGAAGTTCTT
CCAATAACTGGAGG
Found at i:50692419 original size:144 final size:144
Alignment explanation
Indices: 50692243--50692848 Score: 1176
Period size: 144 Copynumber: 4.2 Consensus size: 144
50692233 CTGGTTGGGA
50692243 AAAGCTAAAGAGTCTTCCTCACCAACTTCAGTTCTTCACTGCCCTCGAAGAATTGACGATAGAAG
1 AAAGCTAAAGAGTCTTCCTCACCAACTTCAGTTCTTCACTGCCCTCGAAGAATTGACGATAGAAG
*
50692308 GGTTTGAAGGAGTAGAAGCCTTTCCAGAGTGGTTGGGAAATCTCTCTTCTCTAAAGCGTCTATAT
66 GGTTTGAAGGAGTAGAAGCCTTTCCAGAGTGGTCGGGAAATCTCTCTTCTCTAAAGCGTCTATAT
50692373 TTGAGTGGTTTTGG
131 TTGAGTGGTTTTGG
50692387 AAAGCTAAAGAGTCTTCCTCACCAACTTCAGTTCTTCACTGCCCTCGAAGAATTGACGATAGAAG
1 AAAGCTAAAGAGTCTTCCTCACCAACTTCAGTTCTTCACTGCCCTCGAAGAATTGACGATAGAAG
*
50692452 GGTTTGAAGGAGTAGAAGCCTTTCCAGAGTGGTTGGGAAATCTCTCTTCTCTAAAGCGTCTATAT
66 GGTTTGAAGGAGTAGAAGCCTTTCCAGAGTGGTCGGGAAATCTCTCTTCTCTAAAGCGTCTATAT
50692517 TTGAGTGGTTTTGG
131 TTGAGTGGTTTTGG
*
50692531 AAAGCTAAAGAGTCTTCCTCACCAACTTCAGTTCTTCACTGCCCTCGAAGTATTGACGATAGAAG
1 AAAGCTAAAGAGTCTTCCTCACCAACTTCAGTTCTTCACTGCCCTCGAAGAATTGACGATAGAAG
50692596 GGTTTGAAGGAGTAGAAGCCTTTCCAGAGTGGTCGGGAAATCTCTCTTCTCTAAAGCGTCTATAT
66 GGTTTGAAGGAGTAGAAGCCTTTCCAGAGTGGTCGGGAAATCTCTCTTCTCTAAAGCGTCTATAT
50692661 TTGAGTGGTTTTGG
131 TTGAGTGGTTTTGG
*
50692675 AAAGCTAAAGAGTCTTCCTCACCAACTTCAGTTCTTCACTGCCCTCGAAGTATTGACGATAGAAG
1 AAAGCTAAAGAGTCTTCCTCACCAACTTCAGTTCTTCACTGCCCTCGAAGAATTGACGATAGAAG
50692740 GGTTTGAAGGAGTAGAAGCCTTTCCAGAGTGGTCGGGAAATCTCTCTTCTCTAAAGCGTCTATAT
66 GGTTTGAAGGAGTAGAAGCCTTTCCAGAGTGGTCGGGAAATCTCTCTTCTCTAAAGCGTCTATAT
50692805 TTGAGTGGTTTTGG
131 TTGAGTGGTTTTGG
50692819 AAAGCTAAAGAGTCTTCCTCACCAACTTCA
1 AAAGCTAAAGAGTCTTCCTCACCAACTTCA
50692849 TCTCCCCACT
Statistics
Matches: 460, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
144 460 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (144 bp):
AAAGCTAAAGAGTCTTCCTCACCAACTTCAGTTCTTCACTGCCCTCGAAGAATTGACGATAGAAG
GGTTTGAAGGAGTAGAAGCCTTTCCAGAGTGGTCGGGAAATCTCTCTTCTCTAAAGCGTCTATAT
TTGAGTGGTTTTGG
Found at i:50692902 original size:288 final size:288
Alignment explanation
Indices: 50692243--50692944 Score: 1081
Period size: 288 Copynumber: 2.4 Consensus size: 288
50692233 CTGGTTGGGA
** *
50692243 AAAGCTAAAGAGTCTTCCTCACCAACTTCAGTTCTTCACTGCCCTCGAAGA-ATTGACGATAGAA
1 AAAGCTAAAGAGTCTTCCTCACCAACTTCAGTTCCCCACTACCCTCGAA-ATATTGACGATAGAA
* * * *
50692307 GGGTTTGAAGGAGTAGAAGCCTTTCCAGAGTGGTTGGGAAATCTCTCTTCTCTAAAGCGTCTATA
65 GGGTTTCAAGAAATAGAAGCCTTTCCAGAGTGGTCGGGAAATCTCTCTTCTCTAAAGCGTCTATA
50692372 TTTGAGTGGTTTTGGAAAGCTAAAGAGTCTTCCTCACCAACTTCAGTTCTTCACTGCCCTCGAAG
130 TTTGAGTGGTTTTGGAAAGCTAAAGAGTCTTCCTCACCAACTTCAGTTCTTCACTGCCCTCGAAG
*
50692437 AATTGACGATAGAAGGGTTTGAAGGAGTAGAAGCCTTTCCAGAGTGGTTGGGAAATCTCTCTTCT
195 AATTGACGATAGAAGGGTTTGAAGGAGTAGAAGCCTTTCCAGAGTGGTCGGGAAATCTCTCTTCT
50692502 CTAAAGCGTCTATATTTGAGTGGTTTTGG
260 CTAAAGCGTCTATATTTGAGTGGTTTTGG
** * *
50692531 AAAGCTAAAGAGTCTTCCTCACCAACTTCAGTTCTTCACTGCCCTCGAAGTATTGACGATAGAAG
1 AAAGCTAAAGAGTCTTCCTCACCAACTTCAGTTCCCCACTACCCTCGAAATATTGACGATAGAAG
* * *
50692596 GGTTTGAAGGAGTAGAAGCCTTTCCAGAGTGGTCGGGAAATCTCTCTTCTCTAAAGCGTCTATAT
66 GGTTTCAAGAAATAGAAGCCTTTCCAGAGTGGTCGGGAAATCTCTCTTCTCTAAAGCGTCTATAT
*
50692661 TTGAGTGGTTTTGGAAAGCTAAAGAGTCTTCCTCACCAACTTCAGTTCTTCACTGCCCTCGAAGT
131 TTGAGTGGTTTTGGAAAGCTAAAGAGTCTTCCTCACCAACTTCAGTTCTTCACTGCCCTCGAAGA
50692726 ATTGACGATAGAAGGGTTTGAAGGAGTAGAAGCCTTTCCAGAGTGGTCGGGAAATCTCTCTTCTC
196 ATTGACGATAGAAGGGTTTGAAGGAGTAGAAGCCTTTCCAGAGTGGTCGGGAAATCTCTCTTCTC
50692791 TAAAGCGTCTATATTTGAGTGGTTTTGG
261 TAAAGCGTCTATATTTGAGTGGTTTTGG
* * **
50692819 AAAGCTAAAGAGTCTTCCTCACCAACTTCA-TCTCCCCACTACCCTTGAAA-ATTTGACTATTTA
1 AAAGCTAAAGAGTCTTCCTCACCAACTTCAGT-TCCCCACTACCCTCGAAATA-TTGACGATAGA
* * * * * * *
50692882 CA-GTTTTCATGAAATAGAAGCCTTGCCAGACTCGTTC-AGAAATCTCTCTTCTCTAAAGTGTCT
64 -AGGGTTTCAAGAAATAGAAGCCTTTCCAGAGT-GGTCGGGAAATCTCTCTTCTCTAAAGCGTCT
50692945 GAGTATCGAT
Statistics
Matches: 387, Mismatches: 22, Indels: 10
0.92 0.05 0.02
Matches are distributed among these distances:
287 2 0.01
288 381 0.98
289 4 0.01
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.31
Consensus pattern (288 bp):
AAAGCTAAAGAGTCTTCCTCACCAACTTCAGTTCCCCACTACCCTCGAAATATTGACGATAGAAG
GGTTTCAAGAAATAGAAGCCTTTCCAGAGTGGTCGGGAAATCTCTCTTCTCTAAAGCGTCTATAT
TTGAGTGGTTTTGGAAAGCTAAAGAGTCTTCCTCACCAACTTCAGTTCTTCACTGCCCTCGAAGA
ATTGACGATAGAAGGGTTTGAAGGAGTAGAAGCCTTTCCAGAGTGGTCGGGAAATCTCTCTTCTC
TAAAGCGTCTATATTTGAGTGGTTTTGG
Found at i:50695243 original size:15 final size:16
Alignment explanation
Indices: 50695207--50695244 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
50695197 TCATAGTTTG
*
50695207 AATTTGTTCTAGCTAGT
1 AATTTGTTCTA-CTAAT
50695224 AATTTGTTCTA-TAAT
1 AATTTGTTCTACTAAT
50695239 AATTTG
1 AATTTG
50695245 ATGATACATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 9 0.45
17 11 0.55
ACGTcount: A:0.29, C:0.08, G:0.13, T:0.50
Consensus pattern (16 bp):
AATTTGTTCTACTAAT
Found at i:50696047 original size:31 final size:31
Alignment explanation
Indices: 50696007--50696072 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
50695997 CTTAACAACC
*
50696007 TAGTGACTTAAATAAAAACTTTCAAATAGTT
1 TAGTAACTTAAATAAAAACTTTCAAATAGTT
* **
50696038 TAGTAACTTAAATGAAAACTTTTGAATAGTT
1 TAGTAACTTAAATAAAAACTTTCAAATAGTT
50696069 TAGT
1 TAGT
50696073 GGTCATTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.42, C:0.08, G:0.12, T:0.38
Consensus pattern (31 bp):
TAGTAACTTAAATAAAAACTTTCAAATAGTT
Found at i:50698437 original size:46 final size:46
Alignment explanation
Indices: 50698364--50698502 Score: 206
Period size: 46 Copynumber: 3.0 Consensus size: 46
50698354 CATGGTAAAG
*
50698364 TGTGGAACGTAGGTATGGCATTTCAGTAAAGAAAACCATACTGAGT
1 TGTGGAACGTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGT
** *
50698410 TGTGGAACGTAAATATGGTATTACAGTAAAGAAAACCATACTGAGT
1 TGTGGAACGTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGT
* * * *
50698456 TGTGAAAAGTAGGTATGGTATTTCAGTGAATAAAACCATACTGAGT
1 TGTGGAACGTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGT
50698502 T
1 T
50698503 ATAGCATTGT
Statistics
Matches: 82, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 82 1.00
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.28
Consensus pattern (46 bp):
TGTGGAACGTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGT
Found at i:50699251 original size:21 final size:21
Alignment explanation
Indices: 50699200--50699264 Score: 64
Period size: 22 Copynumber: 3.1 Consensus size: 21
50699190 ATTAACATTT
*
50699200 TTTAATGTTTAC-ATTAT-AA
1 TTTAATTTTTACTATTATAAA
50699219 TATT-ATTATTTACTATTATAAA
1 T-TTAATT-TTTACTATTATAAA
*
50699241 TTTAATTTTTATGTATTATAAA
1 TTTAATTTTTA-CTATTATAAA
50699263 TT
1 TT
50699265 ACATAATATA
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
19 3 0.08
20 7 0.18
21 11 0.29
22 17 0.45
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.57
Consensus pattern (21 bp):
TTTAATTTTTACTATTATAAA
Found at i:50699766 original size:19 final size:19
Alignment explanation
Indices: 50699742--50699788 Score: 55
Period size: 17 Copynumber: 2.6 Consensus size: 19
50699732 TAAAATAGTT
*
50699742 TAAAAA-AATATTATATTTA
1 TAAAAATAAT-TTAAATTTA
50699761 TAAAAATAATTTAAA-TT-
1 TAAAAATAATTTAAATTTA
50699778 TAAAAATAATT
1 TAAAAATAATT
50699789 ACTAAAATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 11 0.42
18 2 0.08
19 10 0.38
20 3 0.12
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (19 bp):
TAAAAATAATTTAAATTTA
Found at i:50701891 original size:39 final size:39
Alignment explanation
Indices: 50701837--50701915 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
50701827 AGAGGAATTG
50701837 AAGCAACTGTGGATGGCTGAAGGATTTCTTGGCAGCTCT
1 AAGCAACTGTGGATGGCTGAAGGATTTCTTGGCAGCTCT
50701876 AAGCAACTGTGGATGGCTGAAGGATTTCTTGGCAGCTCT
1 AAGCAACTGTGGATGGCTGAAGGATTTCTTGGCAGCTCT
50701915 A
1 A
50701916 TGGCAATGGA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (39 bp):
AAGCAACTGTGGATGGCTGAAGGATTTCTTGGCAGCTCT
Found at i:50703566 original size:210 final size:209
Alignment explanation
Indices: 50703204--50705717 Score: 4303
Period size: 210 Copynumber: 12.0 Consensus size: 209
50703194 TAACGGGACA
* * *
50703204 ATGTTCATCTCTTGAAAAGCTTCGCATTGTCGGTTGTGGAAAATTAAGCAAGATTGGAGATGGAT
1 ATGTTCATCTCTTGAAAAGCTTCGCATTTTCGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
50703269 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGACAATTGTCCTGATTTAAGTTCGATCCCA
66 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGACAATTGTCCTGATTTAAGTTCGATCCCA
*
50703334 AATTTGGAAGGATTTTCCTCTCTTCAAGATCTGTCAGTTCAAGGGTGCCTCAAATTGGAAGTTCT
131 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCAA-GGTGCCTCAAATTGGAAGTTCT
50703399 TCCAATAACTGGAGG
195 TCCAATAACTGGAGG
* * * *
50703414 ATGTTCATCTCTTGAAAAGCTTAGAATTTTCAATTGCGAAAAATTAAGCAAGATTGGAGATGGAT
1 ATGTTCATCTCTTGAAAAGCTTCGCATTTTCGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
50703479 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGACAATTGTCCTGATTTAAGTTCGATCCCA
66 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGACAATTGTCCTGATTTAAGTTCGATCCCA
*
50703544 AATTTGGAAGGATTTTCCTCTCTTCAAGATCTGTCAGTTCAAGGGTGCCTCAAATTGGAAGTTCT
131 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCAA-GGTGCCTCAAATTGGAAGTTCT
50703609 TCCAATAACTGGAGG
195 TCCAATAACTGGAGG
* * * *
50703624 ATGTTCATCTCTTGAAAAGCTTAGAATTTTCAATTGCGAAAAATTAAGCAAGATTGGAGATGGAT
1 ATGTTCATCTCTTGAAAAGCTTCGCATTTTCGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
50703689 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGACAATTGTCCTGATTTAAGTTCGATCCCA
66 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGACAATTGTCCTGATTTAAGTTCGATCCCA
* * **
50703754 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTAAAATGTGCAACAAATTGGAAGTTCT
131 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTT-CAAGGTGCCTCAAATTGGAAGTTCT
50703819 TCCAATAACTGGAGG
195 TCCAATAACTGGAGG
*
50703834 ATGTTCATCTCTTGAAAAGCTTCGCATTTGCGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
1 ATGTTCATCTCTTGAAAAGCTTCGCATTTTCGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
* *
50703899 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTATACTATTGTCCTGATTTAAGTTCGATCCCA
66 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGACAATTGTCCTGATTTAAGTTCGATCCCA
50703964 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCACAGGTGCCTCAAATTGGAAGTTCT
131 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCA-AGGTGCCTCAAATTGGAAGTTCT
50704029 TCCAATAACTGGAGG
195 TCCAATAACTGGAGG
*
50704044 ATGTTCATCTCTTGAAAAGCTTCGCATTTGCGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
1 ATGTTCATCTCTTGAAAAGCTTCGCATTTTCGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
** *
50704109 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTACG-GTATTGTTCTGATTTAAGTTCGATCCC
66 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTA-GACAATTGTCCTGATTTAAGTTCGATCCC
* * **
50704173 AAATTTGGAAGGATTTTCCTCTCTTCAAAATCTGTCAGTTAAACGGTGCGACAAATTGGAAGTTC
130 AAATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCAA-GGTGCCTCAAATTGGAAGTTC
50704238 TTCCAATAACTGGAGG
194 TTCCAATAACTGGAGG
* * *
50704254 ATGTTCATCTCTTGAAAAGCTTCGCATTGTCGGTTGTGGAAAATTAAGCAAGATTGGAGATGGAT
1 ATGTTCATCTCTTGAAAAGCTTCGCATTTTCGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
* *
50704319 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGGCGATTGTCCTGATTTAAGTTCGATCCCA
66 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGACAATTGTCCTGATTTAAGTTCGATCCCA
*
50704384 AATTTGGAAGGATTTTCCTCTCTTCAATTTCTGTCAGTTCACAGGTGCCTCAAATTGGAAGTTCT
131 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCA-AGGTGCCTCAAATTGGAAGTTCT
50704449 TCCAATAACTGGAGG
195 TCCAATAACTGGAGG
*
50704464 ATGTTCATCTCTTGAAAAGCTTCGCATTTGCGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
1 ATGTTCATCTCTTGAAAAGCTTCGCATTTTCGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
*
50704529 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGACATTTGTCCTGATTTAAGTTCGATCCCA
66 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGACAATTGTCCTGATTTAAGTTCGATCCCA
*
50704594 AATTTGGAAGGATTTTCCTCTCTTCAAGATCTGTCAGTTCAAGGGTGCCTCAAATTGGAAGTTCT
131 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCAA-GGTGCCTCAAATTGGAAGTTCT
50704659 TCCAATAACTGGAGG
195 TCCAATAACTGGAGG
* * * *
50704674 ATGTTCATCTCTTGAAAAGCTTAGAATTTTCAATTGCGAAAAATTAAGCAAGATTGGAGATGGAT
1 ATGTTCATCTCTTGAAAAGCTTCGCATTTTCGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
* *
50704739 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGGCGATTGTCCTGATTTAAGTTCGATCCCA
66 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGACAATTGTCCTGATTTAAGTTCGATCCCA
*
50704804 AATTTGGAAGGATTTTCCTCTCTTCAATTTCTGTCAGTTCACAGGTGCCTCAAATTGGAAGTTCT
131 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCA-AGGTGCCTCAAATTGGAAGTTCT
50704869 TCCAATAACTGGAGG
195 TCCAATAACTGGAGG
*
50704884 ATGTTCATCTCTTGAAAAGCTTCGCATTTGCGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
1 ATGTTCATCTCTTGAAAAGCTTCGCATTTTCGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
*
50704949 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGACATTTGTCCTGATTTAAGTTCGATCCCA
66 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGACAATTGTCCTGATTTAAGTTCGATCCCA
* * ***
50705014 AATTTGGAAGGATTTTCCTCTCTTCAATATCTATCAGTTCGATGGTGCAAGAAATTGGAAGTTCT
131 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTC-AAGGTGCCTCAAATTGGAAGTTCT
*
50705079 TCCAATAACCGGAGG
195 TCCAATAACTGGAGG
*
50705094 ATGTTCATCTCTTGAAAAGCTTCGCATTTGCGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
1 ATGTTCATCTCTTGAAAAGCTTCGCATTTTCGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
* * *
50705159 TATCTACTTCCACTTATCTCAAAGAATTAGATCTAGACGATTGTCCTGATTTAAGTTCGATCCCA
66 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGACAATTGTCCTGATTTAAGTTCGATCCCA
* *
50705224 AATTTGGAAGGATTTTCCTCTCTTCAAGATCTGTCAGTTCGAAGGTGCGTCAAATTGGAAGTTCT
131 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTC-AAGGTGCCTCAAATTGGAAGTTCT
50705289 TCCAATAACTGGAGG
195 TCCAATAACTGGAGG
* * *
50705304 ATGTTCATCTGTTGAAAAGCTTTGCATTTTCGGTTGTGAAAAATTAAGCAAGATTGGAGATGGAT
1 ATGTTCATCTCTTGAAAAGCTTCGCATTTTCGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
*
50705369 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGACAATTGTCTTGATTTAAGTTCGATCCCA
66 TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGACAATTGTCCTGATTTAAGTTCGATCCCA
50705434 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCACAGGTGCCTCAAATTGGAAGTTCT
131 AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCA-AGGTGCCTCAAATTGGAAGTTCT
50705499 TCCAATAACTGGAGG
195 TCCAATAACTGGAGG
50705514 ATGTTCATCTCTTGAAAAGCTTCGCATTTGT-GATTGTGAAAAATTAAGCAAGATTGGAGATGGA
1 ATGTTCATCTCTTGAAAAGCTTCGCATTT-TCGATTGTGAAAAATTAAGCAAGATTGGAGATGGA
*
50705578 TTATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGACGATTGTCCTGATTTAAGTTCGATCCC
65 TTATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGACAATTGTCCTGATTTAAGTTCGATCCC
**
50705643 AAATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCGAAGGTGCGACAAATTGGAAGTTC
130 AAATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTC-AAGGTGCCTCAAATTGGAAGTTC
50705708 TTCCAATAAC
194 TTCCAATAAC
50705718 AGCACCACTG
Statistics
Matches: 2188, Mismatches: 104, Indels: 24
0.94 0.04 0.01
Matches are distributed among these distances:
209 5 0.00
210 2176 0.99
211 7 0.00
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (209 bp):
ATGTTCATCTCTTGAAAAGCTTCGCATTTTCGATTGTGAAAAATTAAGCAAGATTGGAGATGGAT
TATCTACCTCCACTTGTCTCAAAGAATTAGATCTAGACAATTGTCCTGATTTAAGTTCGATCCCA
AATTTGGAAGGATTTTCCTCTCTTCAATATCTGTCAGTTCAAGGTGCCTCAAATTGGAAGTTCTT
CCAATAACTGGAGG
Found at i:50706263 original size:144 final size:144
Alignment explanation
Indices: 50706069--50706329 Score: 337
Period size: 144 Copynumber: 1.8 Consensus size: 144
50706059 CTGGTTGGGA
** *
50706069 AAAGCTAAAGAGTCTTCCTCACCAACTTCAGTTCTTCACTGCCCTCGAAGAATTGACGATAGA-A
1 AAAGCTAAAGAGTCTTCCTCACCAACTTCAGTTCCCCACTACCCTCGAAGAATTGACGATAGACA
* * * * * **
50706133 GGGTTTCAAGGAGTAGAAGCCTTTCCAGAGTGGTTGGGAAATCTCTCTTCTCTGAAGCGTCTATA
66 -GGTTTCAAGAAATAGAAGCCTTGCCAGACTCGTTCAGAAATCTCTCTTCTCTGAAGCGTCTATA
50706198 TTTGAGTGGTTTTGG
130 TTTGAGTGGTTTTGG
* * * * *
50706213 AAAGCTAAAGAGTCTTCCTCACCAACTTCA-TCTCCCCAGTACCCTTGAAGAGTTGACTATTGAC
1 AAAGCTAAAGAGTCTTCCTCACCAACTTCAGT-TCCCCACTACCCTCGAAGAATTGACGATAGAC
* *
50706277 AGTTTTCATGAAATAGAAGCCTTGCCAGACTCGTTCAGAAATCTCTCTTCTCT
65 AGGTTTCAAGAAATAGAAGCCTTGCCAGACTCGTTCAGAAATCTCTCTTCTCT
50706330 AGAGTGTCTG
Statistics
Matches: 98, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
143 1 0.01
144 96 0.98
145 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (144 bp):
AAAGCTAAAGAGTCTTCCTCACCAACTTCAGTTCCCCACTACCCTCGAAGAATTGACGATAGACA
GGTTTCAAGAAATAGAAGCCTTGCCAGACTCGTTCAGAAATCTCTCTTCTCTGAAGCGTCTATAT
TTGAGTGGTTTTGG
Found at i:50709894 original size:29 final size:27
Alignment explanation
Indices: 50709843--50709897 Score: 83
Period size: 29 Copynumber: 2.0 Consensus size: 27
50709833 TATTTTTATA
50709843 TTTTATATTTTTTTGTAAATTTTAAAG
1 TTTTATATTTTTTTGTAAATTTTAAAG
*
50709870 TTTTAATATTTTTTTTGTAAGTTTTAAA
1 TTTT-ATA-TTTTTTTGTAAATTTTAAA
50709898 AAAATTACAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 4 0.16
28 3 0.12
29 18 0.72
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.64
Consensus pattern (27 bp):
TTTTATATTTTTTTGTAAATTTTAAAG
Found at i:50712010 original size:12 final size:12
Alignment explanation
Indices: 50711995--50712019 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
50711985 ATTATTTATT
50711995 TAATCAAGGGTA
1 TAATCAAGGGTA
50712007 TAATCAAGGGTA
1 TAATCAAGGGTA
50712019 T
1 T
50712020 CAGGTAAGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (12 bp):
TAATCAAGGGTA
Found at i:50716558 original size:6 final size:6
Alignment explanation
Indices: 50716549--50716574 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
50716539 TCACCACCAG
50716549 CAGCAT CAGCAT CAGCAT CAGCAT CA
1 CAGCAT CAGCAT CAGCAT CAGCAT CA
50716575 ACAACAACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.35, G:0.15, T:0.15
Consensus pattern (6 bp):
CAGCAT
Found at i:50734152 original size:65 final size:65
Alignment explanation
Indices: 50734073--50734206 Score: 250
Period size: 65 Copynumber: 2.1 Consensus size: 65
50734063 AAATTGTTAG
* *
50734073 TGAACTATTTGAATATGAAGTTTTGGCATAGTATGTGATTTCCATATTCATGAATGAAATGAGAT
1 TGAACTATTTGAATATAAAGTTTTGGCATAGTATGTGATTTCCATATTCATGAATGAAATGAGAC
50734138 TGAACTATTTGAATATAAAGTTTTGGCATAGTATGTGATTTCCATATTCATGAATGAAATGAGAC
1 TGAACTATTTGAATATAAAGTTTTGGCATAGTATGTGATTTCCATATTCATGAATGAAATGAGAC
50734203 TGAA
1 TGAA
50734207 TAGGTTACTT
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 67 1.00
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.37
Consensus pattern (65 bp):
TGAACTATTTGAATATAAAGTTTTGGCATAGTATGTGATTTCCATATTCATGAATGAAATGAGAC
Found at i:50756995 original size:33 final size:33
Alignment explanation
Indices: 50756958--50757020 Score: 76
Period size: 33 Copynumber: 1.9 Consensus size: 33
50756948 AAAATTCTAA
50756958 TAAATGAA-AAAAATATATAA-ATTTATTAAATAT
1 TAAATGAAGAAAAATATA-AATATTT-TTAAATAT
* *
50756991 TAAATTAAGAATAATATAAATATTTTTAAA
1 TAAATGAAGAAAAATATAAATATTTTTAAA
50757021 AAATTCAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
33 14 0.54
34 12 0.46
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (33 bp):
TAAATGAAGAAAAATATAAATATTTTTAAATAT
Found at i:50757037 original size:33 final size:32
Alignment explanation
Indices: 50756966--50757040 Score: 82
Period size: 33 Copynumber: 2.3 Consensus size: 32
50756956 AATAAATGAA
*
50756966 AAAAAT-ATATAAATTTATTAAATATTAAATT
1 AAAAATAATATAAATTTATTAAAAATTAAATT
* * *
50756997 AAGAATAATATAAATATTTTTAAAAAATTCAA-T
1 AAAAATAATATAAAT-TTATT-AAAAATTAAATT
50757030 AAAAATAATAT
1 AAAAATAATAT
50757041 GAGTATGAGT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
31 5 0.14
32 8 0.22
33 15 0.42
34 8 0.22
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (32 bp):
AAAAATAATATAAATTTATTAAAAATTAAATT
Found at i:50766353 original size:7 final size:7
Alignment explanation
Indices: 50766341--50766367 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
50766331 TAGAATACTA
50766341 AAATAAT
1 AAATAAT
50766348 AAATAAT
1 AAATAAT
50766355 AAATAAT
1 AAATAAT
50766362 AAATAA
1 AAATAA
50766368 AGGGATGCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (7 bp):
AAATAAT
Found at i:50766572 original size:4 final size:4
Alignment explanation
Indices: 50766558--50766609 Score: 59
Period size: 4 Copynumber: 13.0 Consensus size: 4
50766548 ACAAAAAGAG
* * ** *
50766558 TAAA GAAA TAAA TAAA TGAA TGGA TACA TAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
50766606 TAAA
1 TAAA
50766610 ACAAAACAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
4 41 1.00
ACGTcount: A:0.67, C:0.02, G:0.08, T:0.23
Consensus pattern (4 bp):
TAAA
Found at i:50771888 original size:188 final size:186
Alignment explanation
Indices: 50771666--50772047 Score: 536
Period size: 188 Copynumber: 2.0 Consensus size: 186
50771656 TTTCAATTTT
*
50771666 AAAATTTTCAATCCCTGTACTTTATTTGACTTATTTGATAGCCCAAGCTAC-TGGAGTTTAAACT
1 AAAATTTTCAATCCCTGTACTTTATTTGACTTATTTGATAGCCCAAGCT-CTTGGAGTTCAAACT
* *
50771730 TGACTTTGCAATTATGGAGCTAAATTTGAAATTCTTTTATGAGTTGTTGTTTTTAGAGATAATAG
65 TGACTTTGCAATTATCGAGCTAAATTTGAAATTCTTTTATGA---GTTGTTTTTAGAGACAATAG
* *
50771795 AGTAATTATAAGAAAATTTAATTATT-A-AGGTAGTAATTATATCTTCTTGTAATTACAA
127 AGTAATTATAAGAAAATTTAACTATTAATAGGTAGTAATTATATCTTCTAGTAATTACAA
* * * *
50771853 AAAATTTTCAATCCCTGTATTTTAATTTGACTTATTTGATAGCTCAAGCTCTTTGAGTTCAAGCT
1 AAAATTTTCAATCCCTGTACTTT-ATTTGACTTATTTGATAGCCCAAGCTCTTGGAGTTCAAACT
* ** *
50771918 TGACTTTGCAATTATCGAGGTAAATTTGAGTTTCTTTTATGAGTTGTTTTTAGAGACCATAGAGT
65 TGACTTTGCAATTATCGAGCTAAATTTGAAATTCTTTTATGAGTTGTTTTTAGAGACAATAGAGT
* * * *
50771983 AGTTGTAAGAAAGTTTAACTATTAATATGTAGTAATTATATCTTCTAGTAATTACAA
130 AATTATAAGAAAATTTAACTATTAATAGGTAGTAATTATATCTTCTAGTAATTACAA
*
50772040 TAAATTTT
1 AAAATTTT
50772048 AATTTCAGTG
Statistics
Matches: 173, Mismatches: 18, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
185 40 0.23
186 1 0.01
187 59 0.34
188 73 0.42
ACGTcount: A:0.32, C:0.10, G:0.15, T:0.42
Consensus pattern (186 bp):
AAAATTTTCAATCCCTGTACTTTATTTGACTTATTTGATAGCCCAAGCTCTTGGAGTTCAAACTT
GACTTTGCAATTATCGAGCTAAATTTGAAATTCTTTTATGAGTTGTTTTTAGAGACAATAGAGTA
ATTATAAGAAAATTTAACTATTAATAGGTAGTAATTATATCTTCTAGTAATTACAA
Found at i:50778901 original size:3 final size:3
Alignment explanation
Indices: 50778895--50778923 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
50778885 ATTCAACTGC
50778895 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
50778924 GATGATGATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Done.