Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53248092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1300000 characters in sequence are not A, C, G, or T
File 169 of 175
Found at i:50788355 original size:18 final size:17
Alignment explanation
Indices: 50788322--50788360 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
50788312 TTGTATAAAT
50788322 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
50788340 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
50788357 TGTG
1 TGTG
50788361 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:50788613 original size:23 final size:23
Alignment explanation
Indices: 50788586--50788683 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
50788576 AGTGTTATTG
50788586 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
50788609 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
50788632 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
50788654 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
50788677 ATCAGTG
1 ATCAGTG
50788684 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:50788652 original size:45 final size:45
Alignment explanation
Indices: 50788588--50788676 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
50788578 TGTTATTGAT
* *
50788588 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
50788633 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
50788677 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:50791600 original size:59 final size:59
Alignment explanation
Indices: 50791534--50791652 Score: 202
Period size: 59 Copynumber: 2.0 Consensus size: 59
50791524 TATATTTAAG
*
50791534 ATAATCGAGTTAAATGAAATTTAAATTGAATCAATTAAATTAGATTCTCATTTCATGTC
1 ATAATCGAGTTAAATCAAATTTAAATTGAATCAATTAAATTAGATTCTCATTTCATGTC
* * *
50791593 ATAATCGAGTTAAATCAAATTTAAATTGAATCAATTGAATTAGGTTTTCATTTCATGTC
1 ATAATCGAGTTAAATCAAATTTAAATTGAATCAATTAAATTAGATTCTCATTTCATGTC
50791652 A
1 A
50791653 AATAAAAATT
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 56 1.00
ACGTcount: A:0.39, C:0.10, G:0.11, T:0.39
Consensus pattern (59 bp):
ATAATCGAGTTAAATCAAATTTAAATTGAATCAATTAAATTAGATTCTCATTTCATGTC
Found at i:50794285 original size:23 final size:24
Alignment explanation
Indices: 50794224--50794290 Score: 75
Period size: 23 Copynumber: 2.9 Consensus size: 24
50794214 AGAAAAAAAT
50794224 ATAAATTATAATTA-AAATTAATA
1 ATAAATTATAATTATAAATTAATA
** * *
50794247 ATAACGTACAATTATAATTTAA-A
1 ATAAATTATAATTATAAATTAATA
*
50794270 ATAAATTATAAATATAAATTA
1 ATAAATTATAATTATAAATTA
50794291 TATGAAATTT
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
23 28 0.82
24 6 0.18
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.37
Consensus pattern (24 bp):
ATAAATTATAATTATAAATTAATA
Found at i:50794288 original size:13 final size:13
Alignment explanation
Indices: 50794220--50794292 Score: 50
Period size: 13 Copynumber: 6.1 Consensus size: 13
50794210 ACTTAGAAAA
50794220 AAATATAAATTAT
1 AAATATAAATTAT
*
50794233 AATTA-AAATTA-
1 AAATATAAATTAT
* ** *
50794244 ATA-ATAACGTAC
1 AAATATAAATTAT
*
50794256 AATTAT-AATT-T
1 AAATATAAATTAT
50794267 AAA-ATAAATTAT
1 AAATATAAATTAT
50794279 AAATATAAATTAT
1 AAATATAAATTAT
50794292 A
1 A
50794293 TGAAATTTTC
Statistics
Matches: 43, Mismatches: 11, Indels: 12
0.65 0.17 0.18
Matches are distributed among these distances:
10 3 0.07
11 11 0.26
12 13 0.30
13 16 0.37
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.37
Consensus pattern (13 bp):
AAATATAAATTAT
Found at i:50797330 original size:55 final size:53
Alignment explanation
Indices: 50797211--50797331 Score: 140
Period size: 55 Copynumber: 2.2 Consensus size: 53
50797201 TAATTTTTTC
50797211 AATTATATTTTATTTTAAATTTTCTAGAAGTTAGATTTTTTTTAATTTATCTAT
1 AATT-TATTTTATTTTAAATTTTCTAGAAGTTAGATTTTTTTTAATTTATCTAT
* * *
50797265 -ATATACTTTTATTTTAATTATTTT-TAGGAAGTTA-ATTTTTTTTTAATTTGTCTTT
1 AATTTA-TTTTATTTTAA--ATTTTCTA-GAAGTTAGA-TTTTTTTTAATTTATCTAT
50797320 AATTTATTTTAT
1 AATTTATTTTAT
50797332 CTTTTTAATA
Statistics
Matches: 57, Mismatches: 4, Indels: 11
0.79 0.06 0.15
Matches are distributed among these distances:
52 2 0.04
53 13 0.23
54 3 0.05
55 35 0.61
56 4 0.07
ACGTcount: A:0.29, C:0.03, G:0.06, T:0.62
Consensus pattern (53 bp):
AATTTATTTTATTTTAAATTTTCTAGAAGTTAGATTTTTTTTAATTTATCTAT
Found at i:50799652 original size:5 final size:5
Alignment explanation
Indices: 50799642--50799670 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
50799632 AACTGAAAAT
50799642 CAATC CAATC CAATC CAATC CAATC CAAT
1 CAATC CAATC CAATC CAATC CAATC CAAT
50799671 TGAAAGGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.41, C:0.38, G:0.00, T:0.21
Consensus pattern (5 bp):
CAATC
Found at i:50805937 original size:14 final size:14
Alignment explanation
Indices: 50805918--50805953 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
50805908 CTGGGATGGT
50805918 TTTTATTTATCTTA
1 TTTTATTTATCTTA
50805932 TTTTATTTATCTTA
1 TTTTATTTATCTTA
50805946 TTTTATTT
1 TTTTATTT
50805954 TTGTTTACGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (14 bp):
TTTTATTTATCTTA
Found at i:50810300 original size:24 final size:24
Alignment explanation
Indices: 50810246--50810308 Score: 83
Period size: 24 Copynumber: 2.7 Consensus size: 24
50810236 TTTTAAAATT
*
50810246 AAAA-ATATTTATAAAAATTCTAA
1 AAAATATATTTAAAAAAATTCTAA
**
50810269 AATTTATATTTAAAAAAATTCTAA
1 AAAATATATTTAAAAAAATTCTAA
*
50810293 AAAATATATATAAAAA
1 AAAATATATTTAAAAA
50810309 GGCGTTGAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
23 2 0.06
24 31 0.94
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (24 bp):
AAAATATATTTAAAAAAATTCTAA
Found at i:50810705 original size:8 final size:9
Alignment explanation
Indices: 50810665--50810702 Score: 51
Period size: 9 Copynumber: 4.1 Consensus size: 9
50810655 CGAAAAAAAT
50810665 AATTTT-AA
1 AATTTTAAA
50810673 AATTTTAAA
1 AATTTTAAA
50810682 ATATTTATAAA
1 A-ATTT-TAAA
50810693 AATTTTAAA
1 AATTTTAAA
50810702 A
1 A
50810703 TTTATATATT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
8 6 0.22
9 8 0.30
10 8 0.30
11 5 0.19
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (9 bp):
AATTTTAAA
Found at i:50816623 original size:29 final size:29
Alignment explanation
Indices: 50816586--50816660 Score: 89
Period size: 31 Copynumber: 2.5 Consensus size: 29
50816576 TAAATCAATG
50816586 AAAATTCATGTATATAATTA-CATCAAATC
1 AAAATTCATGTATA-AATTACCATCAAATC
*
50816615 AAAATTCATGTATCAAATTACTCATTAAATC
1 AAAATTCATGTAT-AAATTAC-CATCAAATC
* *
50816646 AAAGTTCAAGTATAA
1 AAAATTCATGTATAA
50816661 TTTTGATATT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
29 18 0.45
30 3 0.08
31 19 0.47
ACGTcount: A:0.48, C:0.13, G:0.05, T:0.33
Consensus pattern (29 bp):
AAAATTCATGTATAAATTACCATCAAATC
Found at i:50825878 original size:59 final size:59
Alignment explanation
Indices: 50825810--50826000 Score: 224
Period size: 59 Copynumber: 3.2 Consensus size: 59
50825800 TTTAGATTAA
50825810 ATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGT
1 ATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGT
* ** * * * * * *
50825869 ATTATATATTTTGATTTTAGTAAATTCATATAAGAA-TATATTTAATATTAAGAATTTTATTA-A
1 ATTATATATTTTTATTAAATTATATTTA-ATAATAATTAT-TTTAA-ATT-A-TATTTTA-TAGT
*
50825932 ATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGT
1 ATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGT
50825991 ATTATATATT
1 ATTATATATT
50826001 ATGATTTTAG
Statistics
Matches: 105, Mismatches: 19, Indels: 16
0.75 0.14 0.11
Matches are distributed among these distances:
58 2 0.02
59 41 0.39
60 12 0.11
61 6 0.06
62 11 0.10
63 31 0.30
64 2 0.02
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.54
Consensus pattern (59 bp):
ATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGT
Found at i:50825931 original size:18 final size:18
Alignment explanation
Indices: 50825910--50825955 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
50825900 AAGAATATAT
50825910 TTAATATTA-AGAATTTTA
1 TTAA-ATTATAGAATTTTA
* *
50825928 TTAAATTATATATTTTTA
1 TTAAATTATAGAATTTTA
50825946 TTAAATTATA
1 TTAAATTATA
50825956 TTTAATAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 4 0.16
18 21 0.84
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (18 bp):
TTAAATTATAGAATTTTA
Found at i:50825931 original size:122 final size:121
Alignment explanation
Indices: 50825805--50826322 Score: 518
Period size: 122 Copynumber: 4.4 Consensus size: 121
50825795 CAAACTTTAG
*
50825805 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTA
* * *
50825870 TTATATATTTTGATTTTAGTAAATTCATA-TAAGAATATATTTAATATTAAGAATTTT
66 TTATATATTATGATTTTAGTAAATTAATATTAAG-A-ATATCTAATATTAAGAATTTT
50825927 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTA
*
50825992 TTATATATTATGATTTTAGTAATTTAATATTAAGAATATCTAATATTAAGAATTTT
66 TTATATATTATGATTTTAGTAAATTAATATTAAGAATATCTAATATTAAGAATTTT
* * * *
50826048 ATTAAATTATATTTAATAATTATTATTTTAAATTATATTTTATAGT-ATTA---TATATTTTGAT
1 ATTAAATTATA--T-AT--TT-TTA--TTAAATTATATTTAATAATAATTATGTTAAATTAT-AT
* * *
50826109 TTTAGTA-AATTCATATA--A-GA--ATA-T-ATTTAATATTAAGAAT-T-T--TATT-A-AA--
57 TTTA-TAGTATT-ATATATTATGATTTTAGTAAATTAATATTAAGAATATCTAATATTAAGAATT
50826158 TT
120 TT
* * ** * * * *
50826160 A-TATATT-TTTA-TTAAATTATATT-TA-ATAATAATTA-TG--TTAAATTATATTTTATAGTA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTA
*
50826217 TTATATATTATGATTTTAGTAATTTAATATTAAGAATATCTAATATTAAGAATTTT
66 TTATATATTATGATTTTAGTAAATTAATATTAAGAATATCTAATATTAAGAATTTT
*
50826273 ATTAAATTATGTATTTTTATTAAATTATATTTAATAATAATTATGTTAAA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAA
50826323 ATATGATTAA
Statistics
Matches: 326, Mismatches: 32, Indels: 77
0.75 0.07 0.18
Matches are distributed among these distances:
98 7 0.02
99 15 0.05
100 10 0.03
101 8 0.02
103 3 0.01
104 3 0.01
105 16 0.05
106 1 0.00
107 2 0.01
108 1 0.00
109 4 0.01
110 2 0.01
111 7 0.02
112 3 0.01
113 3 0.01
114 7 0.02
115 4 0.01
116 13 0.04
117 2 0.01
118 9 0.03
119 2 0.01
120 16 0.05
121 37 0.11
122 93 0.29
123 5 0.02
124 4 0.01
125 7 0.02
126 11 0.03
127 10 0.03
128 4 0.01
129 17 0.05
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.53
Consensus pattern (121 bp):
ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTA
TTATATATTATGATTTTAGTAAATTAATATTAAGAATATCTAATATTAAGAATTTT
Found at i:50826021 original size:22 final size:21
Alignment explanation
Indices: 50825972--50826023 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 21
50825962 AATAATTATG
*
50825972 TTAA-ATTATATTTTATAGTA
1 TTAATATTATATTTTATAATA
50825992 TTATATATTATGATTTTAGTAAT-
1 TTA-ATATTAT-ATTTTA-TAATA
50826015 TTAATATTA
1 TTAATATTA
50826024 AGAATATCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 3 0.11
21 1 0.04
22 11 0.41
23 9 0.33
24 3 0.11
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (21 bp):
TTAATATTATATTTTATAATA
Found at i:50826067 original size:103 final size:104
Alignment explanation
Indices: 50825941--50826163 Score: 369
Period size: 103 Copynumber: 2.2 Consensus size: 104
50825931 AATTATATAT
50825941 TTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATTATATATTATGAT
1 TTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATTATATATTATGAT
*
50826006 TTTAGTAATTTAATATTAAG-A-ATATCTAATATTAAGAA
66 TTTAGTAAATTAATA-TAAGAATATATCTAATATTAAGAA
* * *
50826044 TTTTATTAAATTATATTTAATAATTATTATTTTAAATTATATTTTATAGTATTATATATTTTGAT
1 TTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATTATATATTATGAT
* *
50826109 TTTAGTAAATTCATATAAGAATATATTTAATATTAAGAA
66 TTTAGTAAATTAATATAAGAATATATCTAATATTAAGAA
50826148 TTTTATTAAATTATAT
1 TTTTATTAAATTATAT
50826164 ATTTTTATTA
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
102 4 0.04
103 76 0.68
104 32 0.29
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.52
Consensus pattern (104 bp):
TTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATTATATATTATGAT
TTTAGTAAATTAATATAAGAATATATCTAATATTAAGAA
Found at i:50826077 original size:225 final size:225
Alignment explanation
Indices: 50825819--50826282 Score: 919
Period size: 225 Copynumber: 2.1 Consensus size: 225
50825809 AATTATATAT
50825819 TTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTTTGAT
1 TTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTTTGAT
50825884 TTTAGTAAATTCATATAAGAATATATTTAATATTAAGAATTTTATTAAATTATATATTTTTATTA
66 TTTAGTAAATTCATATAAGAATATATTTAATATTAAGAATTTTATTAAATTATATATTTTTATTA
50825949 AATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAA
131 AATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAA
50826014 TTTAATATTAAGAATATCTAATATTAAGAA
196 TTTAATATTAAGAATATCTAATATTAAGAA
*
50826044 TTTTATTAAATTATATTTAATAATTATTATTTTAAATTATATTTTATAGTATTATATATTTTGAT
1 TTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTTTGAT
50826109 TTTAGTAAATTCATATAAGAATATATTTAATATTAAGAATTTTATTAAATTATATATTTTTATTA
66 TTTAGTAAATTCATATAAGAATATATTTAATATTAAGAATTTTATTAAATTATATATTTTTATTA
50826174 AATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAA
131 AATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAA
50826239 TTTAATATTAAGAATATCTAATATTAAGAA
196 TTTAATATTAAGAATATCTAATATTAAGAA
50826269 TTTTATTAAATTAT
1 TTTTATTAAATTAT
50826283 GTATTTTTAT
Statistics
Matches: 238, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
225 238 1.00
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.53
Consensus pattern (225 bp):
TTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTTTGAT
TTTAGTAAATTCATATAAGAATATATTTAATATTAAGAATTTTATTAAATTATATATTTTTATTA
AATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAA
TTTAATATTAAGAATATCTAATATTAAGAA
Found at i:50826085 original size:26 final size:28
Alignment explanation
Indices: 50826049--50826105 Score: 82
Period size: 26 Copynumber: 2.1 Consensus size: 28
50826039 AAGAATTTTA
50826049 TTAAATTATATTTAATA-ATTAT-TATT
1 TTAAATTATATTTAATAGATTATATATT
*
50826075 TTAAATTATATTTTATAGTATTATATATT
1 TTAAATTATATTTAATAG-ATTATATATT
50826104 TT
1 TT
50826106 GATTTTAGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 16 0.59
28 5 0.19
29 6 0.22
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.60
Consensus pattern (28 bp):
TTAAATTATATTTAATAGATTATATATT
Found at i:50826156 original size:18 final size:18
Alignment explanation
Indices: 50826135--50826180 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
50826125 AAGAATATAT
50826135 TTAATATTA-AGAATTTTA
1 TTAA-ATTATAGAATTTTA
* *
50826153 TTAAATTATATATTTTTA
1 TTAAATTATAGAATTTTA
50826171 TTAAATTATA
1 TTAAATTATA
50826181 TTTAATAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 4 0.16
18 21 0.84
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (18 bp):
TTAAATTATAGAATTTTA
Found at i:50826246 original size:22 final size:21
Alignment explanation
Indices: 50826197--50826248 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 21
50826187 AATAATTATG
*
50826197 TTAA-ATTATATTTTATAGTA
1 TTAATATTATATTTTATAATA
50826217 TTATATATTATGATTTTAGTAAT-
1 TTA-ATATTAT-ATTTTA-TAATA
50826240 TTAATATTA
1 TTAATATTA
50826249 AGAATATCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 3 0.11
21 1 0.04
22 11 0.41
23 9 0.33
24 3 0.11
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (21 bp):
TTAATATTATATTTTATAATA
Found at i:50826395 original size:121 final size:119
Alignment explanation
Indices: 50826044--50826357 Score: 348
Period size: 122 Copynumber: 2.6 Consensus size: 119
50826034 ATATTAAGAA
* * * *
50826044 TTTTATTAAATTATATTTAATAATTATTATTTTAAATTATATTTTATAGTATTATATATTTTGAT
1 TTTTATTAAATTATATTTAATAATAATTATGTTAAA-TATATATTATAG-ATTATATATTATGAT
* * * * * **
50826109 TTTAGTAAATTCATAT-AAGAATATATTTAATATTAAGAATTTTATTAAATTATATAT
64 ATTAATAATTTAATATAAAGAATA-A-CTAATAACAAGAATTTTATTAAATTATATAT
*
50826166 TTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATTATATATTATGAT
1 TTTTATTAAATTATATTTAATAATAATTATGTTAAA-TATATATTATAG-ATTATATATTATGAT
* * * * ** *
50826231 TTTAGTAATTTAATATTAAGAATATCTAATATTAAGAATTTTATTAAATTATGTAT
64 ATTAATAATTTAATATAAAGAATAACTAATAACAAGAATTTTATTAAATTATATAT
*
50826287 TTTTATTAAATTATATTTAATAATAATTATGTTAAA-ATATGATTA-A-ATTATTTATTACTGAT
1 TTTTATTAAATTATATTTAATAATAATTATGTTAAATATAT-ATTATAGATTATATATTA-TGAT
50826349 ATTAATAAT
64 ATTAATAAT
50826358 CTTATTAAAA
Statistics
Matches: 177, Mismatches: 12, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
117 10 0.06
118 11 0.06
119 5 0.03
120 3 0.02
121 65 0.37
122 76 0.43
123 7 0.04
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.53
Consensus pattern (119 bp):
TTTTATTAAATTATATTTAATAATAATTATGTTAAATATATATTATAGATTATATATTATGATAT
TAATAATTTAATATAAAGAATAACTAATAACAAGAATTTTATTAAATTATATAT
Found at i:50826522 original size:44 final size:45
Alignment explanation
Indices: 50826459--50826555 Score: 135
Period size: 45 Copynumber: 2.2 Consensus size: 45
50826449 CTATTACACC
*
50826459 TCCATTCCATTCAACCAAAC-ATAAGA-ATACTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACAAT-AGATATACTATTACGCCTCTAT
* * *
50826503 TCCATTACATTCAACCAAACAATTGATTTGCTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACAATAGATATACTATTACGCCTCTAT
50826548 TCCATTAC
1 TCCATTAC
50826556 GCCTCTATTC
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
44 21 0.45
45 26 0.55
ACGTcount: A:0.33, C:0.29, G:0.05, T:0.33
Consensus pattern (45 bp):
TCCATTACATTCAACCAAACAATAGATATACTATTACGCCTCTAT
Found at i:50826556 original size:16 final size:16
Alignment explanation
Indices: 50826535--50826567 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
50826525 TTGATTTGCT
50826535 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
50826551 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
50826567 A
1 A
50826568 ATACAGCGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.21, C:0.36, G:0.06, T:0.36
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:50827055 original size:78 final size:77
Alignment explanation
Indices: 50826948--50827383 Score: 281
Period size: 78 Copynumber: 5.6 Consensus size: 77
50826938 CTCTTGGAGA
* * *
50826948 ATTATGGATATGATCC-GATCCTGACGGCACTTCTATCTTGCGAGAACGATTGTGAATAGGAAAC
1 ATTATGGATAGGATCCAG-TCCTGACGGCACTTCTATCTTGCGAGAACAAGTGTGAATAGG-AAC
50827012 CTTTCTTTTGAAGG
64 CTTTCTTTTGAAGG
** * * * * *
50827026 ACCATGGATAGGATCCAGTCCTAACGGCACGTCTAACTTGCGAGAACAAATGTGCATAGGAATCC
1 ATTATGGATAGGATCCAGTCCTGACGGCACTTCTATCTTGCGAGAACAAGTGTGAATAGGAA-CC
* *
50827091 TTTCTCTCGAAGG
65 TTTCTTTTGAAGG
* * * * * ***
50827104 ATTA-GGAATGGGATTCACTCTTGATGGCACTTCTATCTTATAAGAACAAGTGTGAATAGGAA-C
1 ATTATGG-ATAGGATCCAGTCCTGACGGCACTTCTATCTTGCGAGAACAAGTGTGAATAGGAACC
* * *
50827167 TATTTTTTTCAACAG
65 T-TTCTTTTGAA-GG
** * * * * **
50827182 ATTATGGATAATATCCGGTCCTTACGACACTTCTATCTTGTGAGAATGAGTGTGAATAGGAACCG
1 ATTATGGATAGGATCCAGTCCTGACGGCACTTCTATCTTGCGAGAACAAGTGTGAATAGGAACC-
***
50827247 TTTCTTTTGGTCG
65 TTTCTTTTGAAGG
* * ** * * * * **
50827260 ATTATATG-TAAGATCC-GATCCCAACGACACCTCTATCTTGCGAAAACGAGCATGAATAGGAAC
1 ATTAT-GGATAGGATCCAG-TCCTGACGGCACTTCTATCTTGCGAGAACAAGTGTGAATAGGAAC
* * *
50827323 CGTTTCTCTCGAAAG
64 C-TTTCTTTTGAAGG
* * *
50827338 ATTATGGATAGGAT-CAGATCCTGATGGCACTTTTATCTTACGAGAA
1 ATTATGGATAGGATCCAG-TCCTGACGGCACTTCTATCTTGCGAGAA
50827384 TGAGTATAAA
Statistics
Matches: 271, Mismatches: 75, Indels: 24
0.73 0.20 0.06
Matches are distributed among these distances:
76 2 0.01
77 13 0.05
78 244 0.90
79 11 0.04
80 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.30
Consensus pattern (77 bp):
ATTATGGATAGGATCCAGTCCTGACGGCACTTCTATCTTGCGAGAACAAGTGTGAATAGGAACCT
TTCTTTTGAAGG
Found at i:50830676 original size:13 final size:15
Alignment explanation
Indices: 50830638--50830688 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
50830628 GAGGAAATAA
*
50830638 TAATAATAGTAGTAG
1 TAATAATAATAGTAG
50830653 TAATAATAATAGT-G
1 TAATAATAATAGTAG
*
50830667 TAAT-ATAATAGTAA
1 TAATAATAATAGTAG
50830681 TAATAATA
1 TAATAATA
50830689 TTAAAATAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
13 8 0.25
14 9 0.28
15 15 0.47
ACGTcount: A:0.53, C:0.00, G:0.12, T:0.35
Consensus pattern (15 bp):
TAATAATAATAGTAG
Found at i:50832087 original size:35 final size:35
Alignment explanation
Indices: 50832042--50832108 Score: 125
Period size: 35 Copynumber: 1.9 Consensus size: 35
50832032 GGGTGTGTGA
50832042 TGGTGCTGGTGGCAAACAGCATGGGAGAGTGGGAG
1 TGGTGCTGGTGGCAAACAGCATGGGAGAGTGGGAG
*
50832077 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGG
1 TGGTGCTGGTGGCAAACAGCATGGGAGAGTGG
50832109 AAAGAGGCAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.21, C:0.12, G:0.49, T:0.18
Consensus pattern (35 bp):
TGGTGCTGGTGGCAAACAGCATGGGAGAGTGGGAG
Found at i:50834247 original size:54 final size:54
Alignment explanation
Indices: 50834164--50834268 Score: 165
Period size: 54 Copynumber: 1.9 Consensus size: 54
50834154 GAGTTTTTAT
*
50834164 GTATACCTGCTGACTCTCCTACAAATGTTGAGGACTCTACTACTGGTAGTCAAA
1 GTATACCTGCTGACTCTCCTACAAATGTTGAGGACTCCACTACTGGTAGTCAAA
* ** *
50834218 GTATACCTGCTGGCTCTCCTACAGGTGTTGAGGAGTCCACTACTGGTAGTC
1 GTATACCTGCTGACTCTCCTACAAATGTTGAGGACTCCACTACTGGTAGTC
50834269 GAGTTCAGCA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 46 1.00
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.30
Consensus pattern (54 bp):
GTATACCTGCTGACTCTCCTACAAATGTTGAGGACTCCACTACTGGTAGTCAAA
Found at i:50835059 original size:20 final size:20
Alignment explanation
Indices: 50835034--50835083 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
50835024 TGGCTTAAAA
50835034 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
50835054 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
50835071 GTGGTAGTGGATT
1 TTGGTAGTGGATT
50835084 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:50839699 original size:20 final size:20
Alignment explanation
Indices: 50839674--50839723 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
50839664 TGGCTTAAAA
50839674 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
50839694 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
50839711 GTGGTAGTGGATT
1 TTGGTAGTGGATT
50839724 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:50847566 original size:55 final size:55
Alignment explanation
Indices: 50847477--50847653 Score: 266
Period size: 55 Copynumber: 3.2 Consensus size: 55
50847467 ACATGCTACG
* * * *
50847477 TAACAATTC-ATTTAAACATATAAACAACCGATTCAAAAGAAGCAGCAATCCAATA
1 TAACAA-TCGATTTAAACATATAAACAATCGATTCAAAAGAAGCAGTATTCCAACA
* *
50847532 TAACAATCGATTTGAACATATAAACAATCAATTCAAAAGAAGCAGTATTCCAACA
1 TAACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAGCAGTATTCCAACA
* *
50847587 TAACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAACAATATTCCAACA
1 TAACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAGCAGTATTCCAACA
50847642 TAACAATCGATT
1 TAACAATCGATT
50847654 CAAAAGAAGC
Statistics
Matches: 111, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
54 2 0.02
55 109 0.98
ACGTcount: A:0.50, C:0.19, G:0.07, T:0.24
Consensus pattern (55 bp):
TAACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAGCAGTATTCCAACA
Found at i:50847702 original size:55 final size:55
Alignment explanation
Indices: 50847643--50847766 Score: 169
Period size: 55 Copynumber: 2.3 Consensus size: 55
50847633 ATTCCAACAT
* * * *
50847643 AACAATCGATTCAAA-AGAAGCAGTGTTCTAACATGACAATCAATTTAAACATATA
1 AACAATCGATTCAAACA-AAGCAATATTCTAACATAACAATCAATTTAAACATAAA
* *
50847698 AACAATCGATTCAAACAAAGCAATATTCTAGCATAACAATCGATTTAAACATAAA
1 AACAATCGATTCAAACAAAGCAATATTCTAACATAACAATCAATTTAAACATAAA
*
50847753 AATAATCGATTCAA
1 AACAATCGATTCAA
50847767 TCCAAAATCA
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
55 60 0.98
56 1 0.02
ACGTcount: A:0.49, C:0.17, G:0.09, T:0.25
Consensus pattern (55 bp):
AACAATCGATTCAAACAAAGCAATATTCTAACATAACAATCAATTTAAACATAAA
Found at i:50847739 original size:89 final size:89
Alignment explanation
Indices: 50847554--50847742 Score: 290
Period size: 89 Copynumber: 2.1 Consensus size: 89
50847544 TGAACATATA
* *
50847554 AACAATCAATTCAAAAGAAGCAGTATTCCAACATAACAATCGATTTAAACATATAAACAATCGAT
1 AACAATCGATTCAAAAGAAGCAGTATTCCAACATAACAATCAATTTAAACATATAAACAATCGAT
50847619 TCAAAAGAAACAATATTCCAACAT
66 TCAAAAGAAACAATATTCCAACAT
* * *
50847643 AACAATCGATTCAAAAGAAGCAGTGTTCTAACATGACAATCAATTTAAACATATAAACAATCGAT
1 AACAATCGATTCAAAAGAAGCAGTATTCCAACATAACAATCAATTTAAACATATAAACAATCGAT
* * *
50847708 TCAAACA-AAGCAATATTCTAGCAT
66 TCAAA-AGAAACAATATTCCAACAT
50847732 AACAATCGATT
1 AACAATCGATT
50847743 TAAACATAAA
Statistics
Matches: 91, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
89 90 0.99
90 1 0.01
ACGTcount: A:0.49, C:0.19, G:0.08, T:0.24
Consensus pattern (89 bp):
AACAATCGATTCAAAAGAAGCAGTATTCCAACATAACAATCAATTTAAACATATAAACAATCGAT
TCAAAAGAAACAATATTCCAACAT
Found at i:50847760 original size:144 final size:144
Alignment explanation
Indices: 50847499--50847766 Score: 385
Period size: 144 Copynumber: 1.9 Consensus size: 144
50847489 TAAACATATA
* * *
50847499 AACAACCGATTCAAAAGAAGCAGCAATCCAATATAACAATCGATTTGAACATATAAACAATCAAT
1 AACAACCGATTCAAAAGAAGCAGCAATCCAACATAACAATCAATTTAAACATATAAACAATCAAT
* *
50847564 TCAAAAGAAGCAGTATTCCAACATAACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAA
66 TCAAAAGAAGCAATATTCCAACATAACAATCGATTTAAACATAAAAACAATCGATTCAAAAGAAA
50847629 CAATATTCCAACAT
131 CAATATTCCAACAT
* *** * * *
50847643 AACAATCGATTCAAAAGAAGCAGTGTTCTAACATGACAATCAATTTAAACATATAAACAATCGAT
1 AACAACCGATTCAAAAGAAGCAGCAATCCAACATAACAATCAATTTAAACATATAAACAATCAAT
* * *
50847708 TCAAACA-AAGCAATATTCTAGCATAACAATCGATTTAAACATAAAAATAATCGATTCAA
66 TCAAA-AGAAGCAATATTCCAACATAACAATCGATTTAAACATAAAAACAATCGATTCAA
50847767 TCCAAAATCA
Statistics
Matches: 108, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
144 107 0.99
145 1 0.01
ACGTcount: A:0.50, C:0.18, G:0.09, T:0.23
Consensus pattern (144 bp):
AACAACCGATTCAAAAGAAGCAGCAATCCAACATAACAATCAATTTAAACATATAAACAATCAAT
TCAAAAGAAGCAATATTCCAACATAACAATCGATTTAAACATAAAAACAATCGATTCAAAAGAAA
CAATATTCCAACAT
Found at i:50848648 original size:5 final size:5
Alignment explanation
Indices: 50848638--50848662 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
50848628 GGGAGAGAAG
50848638 AATTA AATTA AATTA AATTA AATTA
1 AATTA AATTA AATTA AATTA AATTA
50848663 TTATTAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AATTA
Found at i:50850837 original size:42 final size:42
Alignment explanation
Indices: 50850781--50850887 Score: 173
Period size: 42 Copynumber: 2.5 Consensus size: 42
50850771 GCAAAGCGCA
50850781 CTGACGT-GACCGCGATTTCCTGGCACGTCC-CTTGACATCGCG
1 CTGACGTGGA-CGCGATTTCCTGGCACGTCCTC-TGACATCGCG
50850823 CTGACGTGGACGCGATTTCCTGGCACGTCCTCTGACATCGCG
1 CTGACGTGGACGCGATTTCCTGGCACGTCCTCTGACATCGCG
*
50850865 CTGACGTGGACGCGATTTGCTGG
1 CTGACGTGGACGCGATTTCCTGG
50850888 AAAATGGTTC
Statistics
Matches: 62, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
42 59 0.95
43 3 0.05
ACGTcount: A:0.14, C:0.32, G:0.30, T:0.24
Consensus pattern (42 bp):
CTGACGTGGACGCGATTTCCTGGCACGTCCTCTGACATCGCG
Found at i:50858338 original size:17 final size:17
Alignment explanation
Indices: 50858316--50858349 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
50858306 ATCCACTAAT
*
50858316 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
50858333 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
50858350 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:50862874 original size:17 final size:17
Alignment explanation
Indices: 50862852--50862885 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
50862842 ATCCACTAAT
*
50862852 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
50862869 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
50862886 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:50863293 original size:22 final size:22
Alignment explanation
Indices: 50863262--50863303 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
50863252 AAATTAAATT
*
50863262 ATATATTTTTATTATCTTAAAA
1 ATATAATTTTATTATCTTAAAA
*
50863284 ATATAATTTTATTATTTTAA
1 ATATAATTTTATTATCTTAA
50863304 TAGTTTAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (22 bp):
ATATAATTTTATTATCTTAAAA
Found at i:50870722 original size:21 final size:22
Alignment explanation
Indices: 50870696--50870742 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
50870686 CTCTGCTCAA
*
50870696 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
50870717 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
50870739 ACTC
1 ACTC
50870743 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:50889453 original size:37 final size:36
Alignment explanation
Indices: 50889412--50889491 Score: 88
Period size: 36 Copynumber: 2.2 Consensus size: 36
50889402 AAAAACAATC
*
50889412 ACGAACCTCAAAAGGATTACATTCTATAAATCGTAAA
1 ACGAA-CTCAAAAGGATTACATTCTATAAACCGTAAA
*** * *
50889449 ACGAACTTGGATGGATTATATTCTATAAACCGTAAA
1 ACGAACTCAAAAGGATTACATTCTATAAACCGTAAA
*
50889485 ACAAACT
1 ACGAACT
50889492 TGGATGAGAC
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
36 31 0.86
37 5 0.14
ACGTcount: A:0.44, C:0.17, G:0.12, T:0.26
Consensus pattern (36 bp):
ACGAACTCAAAAGGATTACATTCTATAAACCGTAAA
Found at i:50889466 original size:36 final size:36
Alignment explanation
Indices: 50889425--50889497 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
50889415 AACCTCAAAA
* *
50889425 GGATTACATTCTATAAATCGTAAAACGAACTTGGAT
1 GGATTACATTCTATAAACCGTAAAACAAACTTGGAT
*
50889461 GGATTATATTCTATAAACCGTAAAACAAACTTGGAT
1 GGATTACATTCTATAAACCGTAAAACAAACTTGGAT
50889497 G
1 G
50889498 AGACATTGGT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.30
Consensus pattern (36 bp):
GGATTACATTCTATAAACCGTAAAACAAACTTGGAT
Found at i:50890893 original size:16 final size:16
Alignment explanation
Indices: 50890872--50890905 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
50890862 CTAAGCTGAG
50890872 AAGCAACGAATTTATC
1 AAGCAACGAATTTATC
50890888 AAGCAACGAATTTATC
1 AAGCAACGAATTTATC
50890904 AA
1 AA
50890906 CGAACCCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.47, C:0.18, G:0.12, T:0.24
Consensus pattern (16 bp):
AAGCAACGAATTTATC
Found at i:50891145 original size:36 final size:36
Alignment explanation
Indices: 50891105--50891176 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
50891095 ATGTGAATAA
50891105 AAATTGTACTTTCGAATCTCAAGCTAAAATGAACCC
1 AAATTGTACTTTCGAATCTCAAGCTAAAATGAACCC
50891141 AAATTGTACTTTCGAATCTCAAGCTAAAATGAACCC
1 AAATTGTACTTTCGAATCTCAAGCTAAAATGAACCC
50891177 TTGTTTTTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (36 bp):
AAATTGTACTTTCGAATCTCAAGCTAAAATGAACCC
Found at i:50901267 original size:24 final size:24
Alignment explanation
Indices: 50901204--50901255 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
50901194 TTTCTAGAAG
* * *
50901204 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
50901228 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATTAGCATAATAT
50901252 ATTT
1 ATTT
50901256 GACTTTGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:50905379 original size:106 final size:108
Alignment explanation
Indices: 50905102--50905547 Score: 603
Period size: 99 Copynumber: 4.2 Consensus size: 108
50905092 GAAAAAGGGA
* *
50905102 AAAAAAACGAAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATTTTTT
1 AAAAAAA-TAAAAAAAAAA-TTTGGGTGTTGGCCTGTCAATGGCCGGCACCCAGTACAA--TTTT
* *
50905167 AAAAAAAATTCTTTTTTTTT-GTGTCAGAGTCAGATATCAGTATACG
62 AAAAAAAAATCTTTTTTTTTCGTGTCAGAATCAGATATCAGTATACG
50905213 AAAAAAATAAAAAATAAAAATCTTTTGGGTGTTGGCCTGTCAATGGCCGGCACCCAGTACAA-TT
1 AAAAAAAT-AAAAA-AAAAA---TTTGGGTGTTGGCCTGTCAATGGCCGGCACCCAGTACAATTT
*
50905277 TAAAAAAAAATCTTTTTTTTTCGTGTCAGAATCAGATATCAATATACG
61 TAAAAAAAAATCTTTTTTTTTCGTGTCAGAATCAGATATCAGTATACG
* *
50905325 AAAAAAAT-TAAAAAAAATTTGGGTGTTGGCCTGTCAATAGCCGGCACCCAGTACAATTTTAAAA
1 AAAAAAATAAAAAAAAAATTTGGGTGTTGGCCTGTCAATGGCCGGCACCCAGTACAATTTTAAAA
*
50905389 AAAAA--------TTTCGTGTCAGAATCAGATATCAGTATAAG
66 AAAAATCTTTTTTTTTCGTGTCAGAATCAGATATCAGTATACG
* *
50905424 AAAAAAATAAAAAAAAAATTT-GGTGTTGGCCTGTCAATGGCCAGCACCCGGTACAA-TTTAAAA
1 AAAAAAATAAAAAAAAAATTTGGGTGTTGGCCTGTCAATGGCCGGCACCCAGTACAATTTTAAAA
* *
50905487 AAAAATTTCTTTTTTTTCGTGACAGAATCAGATATCAGTATACG
66 AAAAATCT-TTTTTTTTCGTGTCAGAATCAGATATCAGTATACG
50905531 AAAAAAATAAAAAAAAA
1 AAAAAAATAAAAAAAAA
50905548 TTAAATGAGA
Statistics
Matches: 304, Mismatches: 15, Indels: 36
0.86 0.04 0.10
Matches are distributed among these distances:
98 12 0.04
99 68 0.22
100 11 0.04
106 38 0.12
107 57 0.19
109 5 0.02
110 3 0.01
111 34 0.11
112 37 0.12
114 39 0.13
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.28
Consensus pattern (108 bp):
AAAAAAATAAAAAAAAAATTTGGGTGTTGGCCTGTCAATGGCCGGCACCCAGTACAATTTTAAAA
AAAAATCTTTTTTTTTCGTGTCAGAATCAGATATCAGTATACG
Found at i:50905753 original size:107 final size:107
Alignment explanation
Indices: 50905634--50905989 Score: 482
Period size: 108 Copynumber: 3.4 Consensus size: 107
50905624 ATCTCATTTA
*
50905634 TTTTTTATTTTTTTCGTATACTGTTATCTGATTCTGACACGAAAAAAAAGAAATTTTTTTTTAAA
1 TTTTTTATTTTTTTCGTATACTGATATCTGATTCTGACACGAAAAAAAAGAAATTTTTTTTT-AA
*
50905699 ATTGTACTGGGTGCCGGCCATTGACAAGCCAGCACCCAAAATT
65 ATTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATT
* *
50905742 TTTTTTATTTTTTTCGTATACTGATATCTGATTCTGACAAGAAAAAAAAGAATTTTTTTTTTAAA
1 TTTTTTATTTTTTTCGTATACTGATATCTGATTCTGACACGAAAAAAAAGAAATTTTTTTTTAAA
**
50905807 TTGTACTGGGTGCCGGCCATTGACAGGCCAGCACTAAAAAATT
66 TTGTACTGGGTGCCGGCCATTGACAGGCCAGCAC-CCAAAATT
* * *
50905850 TTTTTAAATTTTTTTCGTATATTGATATCTGATTCTAACACG---AAAAA-AAA-----TTTTAA
1 TTTTT-TATTTTTTTCGTATACTGATATCTGATTCTGACACGAAAAAAAAGAAATTTTTTTTTAA
*
50905906 ATTGTACTGGGTGCCGACCATTGACAGGCCAAG-ACCCAAAATTT
65 ATTGTACTGGGTGCCGGCCATTGACAGGCC-AGCACCCAAAA-TT
*
50905950 TTTTTTATTTTTTTTGTATACTGATATCTGACTT-TGACAC
1 TTTTTTATTTTTTTCGTATACTGATATCTGA-TTCTGACAC
50905990 AAATTTTTTT
Statistics
Matches: 225, Mismatches: 18, Indels: 19
0.86 0.07 0.07
Matches are distributed among these distances:
99 32 0.14
100 46 0.20
101 2 0.01
105 2 0.01
106 5 0.02
107 36 0.16
108 70 0.31
109 32 0.14
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.40
Consensus pattern (107 bp):
TTTTTTATTTTTTTCGTATACTGATATCTGATTCTGACACGAAAAAAAAGAAATTTTTTTTTAAA
TTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATT
Found at i:50906115 original size:98 final size:100
Alignment explanation
Indices: 50905995--50906194 Score: 282
Period size: 103 Copynumber: 2.0 Consensus size: 100
50905985 GACACAAATT
*
50905995 TTTTTTTTGTATACTGATATCTGATTCTAACACGAAAAAA-AA-ATTT-AAATTGTACTGGGAGC
1 TTTTTTTTGTATACTGATATCTGACTCTAACAC-AAAAAAGAATATTTAAAATTGTACTGGGAGC
50906057 CGGCCATTGACAGGCCAAG-ACCCAAAATTTTTTTTA
65 CGGCCATTGACAGGCC-AGCACCCAAAATTTTTTTTA
* * *
50906093 TTTTTTTTGTATACTGATATCTGACTCTGACACAAAAAAGAATTTTTTTTAAAATTGTACTGGGT
1 TTTTTTTTGTATACTGATATCTGACTCTAACACAAAAAAGAA---TATTTAAAATTGTACTGGGA
*
50906158 GCCGGCCATTGACAGGCCAGCACCCAAATTTTTTTTT
63 GCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTT
50906195 TCGTTTTTCT
Statistics
Matches: 90, Mismatches: 5, Indels: 9
0.87 0.05 0.09
Matches are distributed among these distances:
97 6 0.07
98 33 0.37
102 5 0.06
103 46 0.51
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.37
Consensus pattern (100 bp):
TTTTTTTTGTATACTGATATCTGACTCTAACACAAAAAAGAATATTTAAAATTGTACTGGGAGCC
GGCCATTGACAGGCCAGCACCCAAAATTTTTTTTA
Found at i:50906127 original size:136 final size:137
Alignment explanation
Indices: 50905858--50906128 Score: 481
Period size: 137 Copynumber: 2.0 Consensus size: 137
50905848 TTTTTTTAAA
* * *
50905858 TTTTTTTCGTATATTGATATCTGATTCTAACACGAAAAAAAATTTTAAATTGTACTGGGTGCCGA
1 TTTTTTTCGTATACTGATATCTGATTCTAACACGAAAAAAAAATTTAAATTGTACTGGGAGCCGA
*
50905923 CCATTGACAGGCCAAGACCCAAAATTTTTTTTTATTTTTTTTGTATACTGATATCTGACTTTGAC
66 CCATTGACAGGCCAAGACCCAAAATTTTTTTTTATTTTTTTTGTATACTGATATCTGACTCTGAC
50905988 ACAAATT
131 ACAAATT
* *
50905995 TTTTTTTTGTATACTGATATCTGATTCTAACACGAAAAAAAAATTTAAATTGTACTGGGAGCCGG
1 TTTTTTTCGTATACTGATATCTGATTCTAACACGAAAAAAAAATTTAAATTGTACTGGGAGCCGA
50906060 CCATTGACAGGCCAAGACCCAAAA-TTTTTTTTATTTTTTTTGTATACTGATATCTGACTCTGAC
66 CCATTGACAGGCCAAGACCCAAAATTTTTTTTTATTTTTTTTGTATACTGATATCTGACTCTGAC
50906124 ACAAA
131 ACAAA
50906129 AAAGAATTTT
Statistics
Matches: 128, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
136 44 0.34
137 84 0.66
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39
Consensus pattern (137 bp):
TTTTTTTCGTATACTGATATCTGATTCTAACACGAAAAAAAAATTTAAATTGTACTGGGAGCCGA
CCATTGACAGGCCAAGACCCAAAATTTTTTTTTATTTTTTTTGTATACTGATATCTGACTCTGAC
ACAAATT
Found at i:50911075 original size:31 final size:31
Alignment explanation
Indices: 50911038--50911100 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
50911028 TAGTATAAAG
50911038 AAAGCCACACAAACTAGGAATAAATAAAGAT
1 AAAGCCACACAAACTAGGAATAAATAAAGAT
50911069 AAAGCCACACAAACTAGGAATAAATAAAGAT
1 AAAGCCACACAAACTAGGAATAAATAAAGAT
50911100 A
1 A
50911101 TAACAGACAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.59, C:0.16, G:0.13, T:0.13
Consensus pattern (31 bp):
AAAGCCACACAAACTAGGAATAAATAAAGAT
Found at i:50913478 original size:6 final size:6
Alignment explanation
Indices: 50913467--50913492 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
50913457 TTAGAATCTA
50913467 AATGGC AATGGC AATGGC AATGGC AA
1 AATGGC AATGGC AATGGC AATGGC AA
50913493 CACACAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.38, C:0.15, G:0.31, T:0.15
Consensus pattern (6 bp):
AATGGC
Found at i:50915295 original size:33 final size:33
Alignment explanation
Indices: 50915249--50915314 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
50915239 CCTGAAAACT
50915249 AATGATCACAAGACCAAAACATACATAAATACG
1 AATGATCACAAGACCAAAACATACATAAATACG
* **
50915282 AATGATCATAAGACCAAAACATATGTAAATACG
1 AATGATCACAAGACCAAAACATACATAAATACG
50915315 TAAATACTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.53, C:0.18, G:0.11, T:0.18
Consensus pattern (33 bp):
AATGATCACAAGACCAAAACATACATAAATACG
Found at i:50918019 original size:24 final size:25
Alignment explanation
Indices: 50917990--50918038 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
50917980 CAATCGTGAT
50917990 TAAATT-ATGTCAAATTAAAATATA
1 TAAATTAATGTCAAATTAAAATATA
* * *
50918014 TAAATTAATTTTAAATTTAAATATA
1 TAAATTAATGTCAAATTAAAATATA
50918039 ATATAAAAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (25 bp):
TAAATTAATGTCAAATTAAAATATA
Found at i:50919758 original size:64 final size:64
Alignment explanation
Indices: 50919649--50919768 Score: 159
Period size: 64 Copynumber: 1.9 Consensus size: 64
50919639 GCTAGCATCT
* *** * * *
50919649 TGATCGGTATTGATCCTGCATGTGTTGCGAACATACCGCAGCTCTTTGTGAGCGTCCTGTTATA
1 TGATCGGTATTGATCCTACATAAATTGCGAACATACCGCAACTCTTTATAAGCGTCCTGTTATA
* *
50919713 TGATCGGTATTGATCCTACATAAATTGCGGACATACTGCAACTCTTTATAAGCGTC
1 TGATCGGTATTGATCCTACATAAATTGCGAACATACCGCAACTCTTTATAAGCGTC
50919769 TCGATATAGC
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
64 47 1.00
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.33
Consensus pattern (64 bp):
TGATCGGTATTGATCCTACATAAATTGCGAACATACCGCAACTCTTTATAAGCGTCCTGTTATA
Found at i:50922335 original size:21 final size:21
Alignment explanation
Indices: 50922311--50922363 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
50922301 AAATAAAAAT
50922311 ATATATATAAAAAT-TCAGAAA
1 ATATATATAAAAATCT-AGAAA
50922332 ATATATATATAAAATCTAGAAA
1 ATATATATA-AAAATCTAGAAA
*
50922354 A-AAATATAAA
1 ATATATATAAA
50922364 GTATAGAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
20 2 0.07
21 15 0.52
22 11 0.38
23 1 0.03
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.28
Consensus pattern (21 bp):
ATATATATAAAAATCTAGAAA
Found at i:50922357 original size:25 final size:24
Alignment explanation
Indices: 50922305--50922361 Score: 75
Period size: 23 Copynumber: 2.5 Consensus size: 24
50922295 TTTTAAAAAT
50922305 AAAAATATATATATAAAAATTCAG
1 AAAAATATATATATAAAAATTCAG
50922329 -AAAATATATATAT-AAAA-TCTAG
1 AAAAATATATATATAAAAATTC-AG
*
50922351 AAAAAAATATA
1 AAAAATATATA
50922362 AAGTATAGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 2 0.07
22 6 0.20
23 22 0.73
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.28
Consensus pattern (24 bp):
AAAAATATATATATAAAAATTCAG
Found at i:50922474 original size:25 final size:24
Alignment explanation
Indices: 50922437--50922503 Score: 75
Period size: 25 Copynumber: 2.8 Consensus size: 24
50922427 AAATTATAAA
50922437 TAATTTAATAATTTAATATTTATTG
1 TAATTTAATAATTTAATATTT-TTG
*
50922462 TAATATTAA-AATTTTATATTTTTG
1 TAAT-TTAATAATTTAATATTTTTG
*
50922486 T-TTTTAATAATTTTAATA
1 TAATTTAATAA-TTTAATA
50922504 ATTTATATGT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
22 4 0.11
23 3 0.08
24 10 0.28
25 15 0.42
26 4 0.11
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (24 bp):
TAATTTAATAATTTAATATTTTTG
Found at i:50922559 original size:26 final size:26
Alignment explanation
Indices: 50922526--50922591 Score: 73
Period size: 26 Copynumber: 2.6 Consensus size: 26
50922516 TTTTCTAAAT
*
50922526 TATATATTTTTATGAATTT-ATATATA
1 TATATATTTATAT-AATTTAATATATA
** *
50922552 TATATATTTATATTTTTTAATATGTA
1 TATATATTTATATAATTTAATATATA
50922578 TATATATTTA-ATAA
1 TATATATTTATATAA
50922592 AAGAAATTGT
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
25 5 0.15
26 28 0.85
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (26 bp):
TATATATTTATATAATTTAATATATA
Found at i:50934537 original size:19 final size:19
Alignment explanation
Indices: 50934500--50934557 Score: 89
Period size: 19 Copynumber: 3.0 Consensus size: 19
50934490 CGTATAACCT
* *
50934500 TTAAAAGTAAAAACTAAAAA
1 TTAAAA-TAAAACCGAAAAA
50934520 TTAAAATAAAACCGAAAAA
1 TTAAAATAAAACCGAAAAA
50934539 TTAAAATAAAACCGAAAAA
1 TTAAAATAAAACCGAAAAA
50934558 AGAGTGAGTG
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
19 30 0.83
20 6 0.17
ACGTcount: A:0.69, C:0.09, G:0.05, T:0.17
Consensus pattern (19 bp):
TTAAAATAAAACCGAAAAA
Found at i:50942028 original size:132 final size:135
Alignment explanation
Indices: 50941799--50942041 Score: 316
Period size: 132 Copynumber: 1.8 Consensus size: 135
50941789 AACTCGAGGC
50941799 GTGTGAGTTAATTATAAATATAGCAAAAAAAAAAAGTTAGTGCTAAGTATGAAGAAATGGGCTTA
1 GTGTGAGTTAATTATAAATATAGC--AAAAAAAAAGTTAGTGCTAAGTATGAAGAAATGGGCTTA
50941864 GACCCACTCATCTTTAGAGGTCAAATAACAAGTAGTTTGATGCCTTTTATGGTCTCAGATTCAAA
64 GACCCACTCATCTTTAGAGGTCAAATAACAAGTAGTTTGATGCCTTTTATGGTCTCAGATTCAAA
50941929 TAAATGT
129 TAAATGT
* * *
50941936 GTGTGAGTTAATTATAAATGTA-C-TAAAAAAA-TTAGTGC-ATAGTATTAAGAAATGGGCTTAG
1 GTGTGAGTTAATTATAAATATAGCAAAAAAAAAGTTAGTGCTA-AGTATGAAGAAATGGGCTTAG
*** * * * **
50941997 ATGTATTCATC-TTATGGGGTCGAATGGCAAGTAGTTTGATGCCTT
65 ACCCACTCATCTTTA-GAGGTCAAATAACAAGTAGTTTGATGCCTT
50942042 ATAAGTAAGG
Statistics
Matches: 93, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
131 4 0.04
132 60 0.65
133 7 0.08
136 1 0.01
137 21 0.23
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (135 bp):
GTGTGAGTTAATTATAAATATAGCAAAAAAAAAGTTAGTGCTAAGTATGAAGAAATGGGCTTAGA
CCCACTCATCTTTAGAGGTCAAATAACAAGTAGTTTGATGCCTTTTATGGTCTCAGATTCAAATA
AATGT
Found at i:50942155 original size:138 final size:134
Alignment explanation
Indices: 50941827--50942190 Score: 348
Period size: 132 Copynumber: 2.7 Consensus size: 134
50941817 TATAGCAAAA
* * * * *
50941827 AAAAAAAGTTAGTGCTA-AGTATGAAGAAATGGGCTTAGACCCACTCATCTTTAGAGGTCAAATA
1 AAAAAAA-TTAGTGC-ACAGTATGAAGAAATGGGCTTAGACCTACTCCTATCTAG-GGTCAAATG
* * * * *
50941891 ACAAGTAGTTTGATGCCTTT---TATGGTCTCAGATTCAAATAAATGTGTGTGAGTTAATTATAA
63 GCAAGTAGTTTGATGCCTTTAAGTAAGGTCTCAGATTCAAATAAATGCGTGTGAATCAATTATAA
50941953 ATGTACT
128 ATGTACT
* * ** * *
50941960 AAAAAAATTAGTGCATAGTATTAAGAAATGGGCTTAGATGTA-TTC-ATCTTATGGGGTCGAATG
1 AAAAAAATTAGTGCACAGTATGAAGAAATGGGCTTAGACCTACTCCTATC-TA--GGGTCAAATG
* **
50942023 GCAAGTAGTTTGATGCCTTATAAGTAAGGTTTC-GAGTTCAAATCGATGCGTACGTGAATCAATT
63 GCAAGTAGTTTGATGCCTT-TAAGTAAGGTCTCAGA-TTCAAATAAATGCGT--GTGAATCAATT
50942087 ATAAATGTACT
124 ATAAATGTACT
* *
50942098 CAAAAAAGA-TATTGCACAGTACGAAGAAATGGGCTTAGACCTACTCCTATCTAGGGTCAAATGG
1 -AAAAAA-ATTAGTGCACAGTATGAAGAAATGGGCTTAGACCTACTCCTATCTAGGGTCAAATGG
* *
50942162 TAAGTAGTTCGATGCCTTTTAAGTAAGGT
64 CAAGTAGTTTGATGCC-TTTAAGTAAGGT
50942191 ATTAATTTTT
Statistics
Matches: 187, Mismatches: 28, Indels: 27
0.77 0.12 0.11
Matches are distributed among these distances:
130 1 0.01
131 4 0.02
132 54 0.29
133 9 0.05
135 2 0.01
136 19 0.10
138 54 0.29
139 36 0.19
140 5 0.03
141 3 0.02
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.31
Consensus pattern (134 bp):
AAAAAAATTAGTGCACAGTATGAAGAAATGGGCTTAGACCTACTCCTATCTAGGGTCAAATGGCA
AGTAGTTTGATGCCTTTAAGTAAGGTCTCAGATTCAAATAAATGCGTGTGAATCAATTATAAATG
TACT
Found at i:50953917 original size:13 final size:13
Alignment explanation
Indices: 50953895--50953936 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
50953885 TCATTTTATT
*
50953895 AAAATAAATACAA
1 AAAATTAATACAA
*
50953908 AAAATTAATAC-C
1 AAAATTAATACAA
*
50953920 AAAATTAATATAA
1 AAAATTAATACAA
50953933 AAAA
1 AAAA
50953937 CAAAAAGTGA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
12 10 0.42
13 14 0.58
ACGTcount: A:0.71, C:0.07, G:0.00, T:0.21
Consensus pattern (13 bp):
AAAATTAATACAA
Found at i:50958323 original size:12 final size:13
Alignment explanation
Indices: 50958306--50958340 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
50958296 ATATTTTGAT
50958306 ATTAAATTAT-AA
1 ATTAAATTATCAA
50958318 ATTAAATTATCAA
1 ATTAAATTATCAA
*
50958331 ATTAAGTTAT
1 ATTAAATTAT
50958341 TAAAAACAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (13 bp):
ATTAAATTATCAA
Found at i:50959617 original size:16 final size:16
Alignment explanation
Indices: 50959596--50959627 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
50959586 TGAATTGAAG
50959596 CAAATTTCATTGAGAC
1 CAAATTTCATTGAGAC
50959612 CAAATTTCATTGAGAC
1 CAAATTTCATTGAGAC
50959628 TAGATTCTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (16 bp):
CAAATTTCATTGAGAC
Found at i:50963070 original size:22 final size:22
Alignment explanation
Indices: 50963038--50963095 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 22
50963028 GTACTTTATG
*
50963038 TTAAAAT-TTTTAAATTTT-TT
1 TTAAAATATTTTAAATTTTAAT
50963058 TTATAAATATTTTAAATTTTAAAT
1 TTA-AAATATTTTAAATTTT-AAT
50963082 TTAAAATATTTTAA
1 TTAAAATATTTTAA
50963096 TATAACATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
20 3 0.09
21 4 0.12
22 11 0.33
23 11 0.33
24 4 0.12
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
TTAAAATATTTTAAATTTTAAT
Found at i:50964100 original size:18 final size:17
Alignment explanation
Indices: 50964069--50964121 Score: 54
Period size: 17 Copynumber: 3.0 Consensus size: 17
50964059 ATTTTTAAAG
50964069 TTTTTTTA-AAAATTTGA
1 TTTTTTTATAAAATTT-A
*
50964086 TTTTTTTATAGAATTTA
1 TTTTTTTATAAAATTTA
*
50964103 TATTTTTATGATAAATTTA
1 TTTTTTTAT-A-AAATTTA
50964122 ATAACACTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 17 0.57
18 7 0.23
19 6 0.20
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (17 bp):
TTTTTTTATAAAATTTA
Found at i:50964142 original size:22 final size:22
Alignment explanation
Indices: 50964116--50964164 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
50964106 TTTTATGATA
* *
50964116 AATTTAATAACACTTTTAGTTT
1 AATTTAATAACACTTTTAATTC
*
50964138 AATTTAATAACATTTTTAATTC
1 AATTTAATAACACTTTTAATTC
50964160 AATTT
1 AATTT
50964165 GGTAAACTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.39, C:0.08, G:0.02, T:0.51
Consensus pattern (22 bp):
AATTTAATAACACTTTTAATTC
Found at i:50975507 original size:21 final size:21
Alignment explanation
Indices: 50975466--50975508 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
50975456 TTTAACTTTT
*
50975466 TTTAAATAAATAATGATTAAA
1 TTTAAATAAAAAATGATTAAA
*
50975487 TTTAATTAAAAAAT-ATATAAA
1 TTTAAATAAAAAATGAT-TAAA
50975508 T
1 T
50975509 AATAAAAACT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (21 bp):
TTTAAATAAAAAATGATTAAA
Found at i:50978227 original size:28 final size:28
Alignment explanation
Indices: 50978175--50978228 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
50978165 AACTTGAGAT
* *
50978175 TCAATTTTATTTTTAAATACTGTAATAC
1 TCAATTTTATTGTTAAATACAGTAATAC
50978203 TCAATTTTATTGTTATAATA-AGTAAT
1 TCAATTTTATTGTTA-AATACAGTAAT
50978229 TAATCTTATC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
28 19 0.83
29 4 0.17
ACGTcount: A:0.37, C:0.07, G:0.06, T:0.50
Consensus pattern (28 bp):
TCAATTTTATTGTTAAATACAGTAATAC
Found at i:50983220 original size:24 final size:25
Alignment explanation
Indices: 50983184--50983253 Score: 79
Period size: 24 Copynumber: 2.8 Consensus size: 25
50983174 CTCTCTCTCA
*
50983184 AGCACTATAACGGGAAGCTCAT-TG
1 AGCAATATAACGGGAAGCTCATCTG
** * *
50983208 AGCCTTGTAACGGGAAGCTTATCTG
1 AGCAATATAACGGGAAGCTCATCTG
*
50983233 GGCAATATAACGGGAAGCTCA
1 AGCAATATAACGGGAAGCTCA
50983254 CAAAGAGCCT
Statistics
Matches: 36, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
24 18 0.50
25 18 0.50
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.21
Consensus pattern (25 bp):
AGCAATATAACGGGAAGCTCATCTG
Found at i:50983393 original size:26 final size:26
Alignment explanation
Indices: 50983364--50983435 Score: 108
Period size: 26 Copynumber: 2.8 Consensus size: 26
50983354 CAAGCACTAA
*
50983364 CGGGAAGCTCACAAAAAGCCTTTAAT
1 CGGGAAGCTCACAAAGAGCCTTTAAT
50983390 CGGGAAGCTCACAAAGAGCCTTTAAT
1 CGGGAAGCTCACAAAGAGCCTTTAAT
** *
50983416 CAAGAAGCTCATAAAGAGCC
1 CGGGAAGCTCACAAAGAGCC
50983436 ATATAACAAG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.39, C:0.24, G:0.21, T:0.17
Consensus pattern (26 bp):
CGGGAAGCTCACAAAGAGCCTTTAAT
Found at i:50983445 original size:26 final size:26
Alignment explanation
Indices: 50983367--50983455 Score: 90
Period size: 26 Copynumber: 3.4 Consensus size: 26
50983357 GCACTAACGG
* * * **
50983367 GAAGCTCACAAAAAGCCTTTAATCGG
1 GAAGCTCATAAAGAGCCTATAATCAA
* *
50983393 GAAGCTCACAAAGAGCCTTTAATCAA
1 GAAGCTCATAAAGAGCCTATAATCAA
50983419 GAAGCTCATAAAGAGCCATATAA-CAA
1 GAAGCTCATAAAGAGCC-TATAATCAA
*
50983445 GACGCTCATAA
1 GAAGCTCATAA
50983456 GATCTGCAAT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
26 52 0.93
27 4 0.07
ACGTcount: A:0.43, C:0.22, G:0.17, T:0.18
Consensus pattern (26 bp):
GAAGCTCATAAAGAGCCTATAATCAA
Found at i:50989623 original size:17 final size:17
Alignment explanation
Indices: 50989592--50989625 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
50989582 AACCCTAAAT
**
50989592 TGCATATATTTCAAAAG
1 TGCATATATAACAAAAG
50989609 TGCATATATAACAAAAG
1 TGCATATATAACAAAAG
50989626 GATAAGATAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.29
Consensus pattern (17 bp):
TGCATATATAACAAAAG
Found at i:50991774 original size:14 final size:14
Alignment explanation
Indices: 50991755--50991782 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
50991745 AATTGTGCCC
50991755 GCTAATAGGGTATT
1 GCTAATAGGGTATT
50991769 GCTAATAGGGTATT
1 GCTAATAGGGTATT
50991783 TCAAGAGGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.07, G:0.29, T:0.36
Consensus pattern (14 bp):
GCTAATAGGGTATT
Found at i:50992759 original size:95 final size:95
Alignment explanation
Indices: 50992596--50992785 Score: 362
Period size: 95 Copynumber: 2.0 Consensus size: 95
50992586 TAATCTACTG
50992596 TTTCATTCAATTACTTTTATTTACTAATTGTATACGTACATTCCCTAGACATAAATGGGTGTGCA
1 TTTCATTCAATTACTTTTATTTACTAATTGTATACGTACATTCCCTAGACATAAATGGGTGTGCA
50992661 GTATGCACATAAATTGAATCTAATTTTGAA
66 GTATGCACATAAATTGAATCTAATTTTGAA
* *
50992691 TTTCATTCAATTACTTTTATTTCCTAATTGTATAGGTACATTCCCTAGACATAAATGGGTGTGCA
1 TTTCATTCAATTACTTTTATTTACTAATTGTATACGTACATTCCCTAGACATAAATGGGTGTGCA
50992756 GTATGCACATAAATTGAATCTAATTTTGAA
66 GTATGCACATAAATTGAATCTAATTTTGAA
50992786 AAGGTTGGAT
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
95 93 1.00
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (95 bp):
TTTCATTCAATTACTTTTATTTACTAATTGTATACGTACATTCCCTAGACATAAATGGGTGTGCA
GTATGCACATAAATTGAATCTAATTTTGAA
Found at i:50995983 original size:17 final size:19
Alignment explanation
Indices: 50995963--50995997 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
50995953 AATAATATAT
50995963 AATTAAAT-TAAA-ACAAA
1 AATTAAATATAAATACAAA
50995980 AATTAAATATAAATACAA
1 AATTAAATATAAATACAA
50995998 GAATATTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 4 0.25
19 4 0.25
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.26
Consensus pattern (19 bp):
AATTAAATATAAATACAAA
Found at i:51000002 original size:3 final size:3
Alignment explanation
Indices: 50999994--51000072 Score: 68
Period size: 3 Copynumber: 25.7 Consensus size: 3
50999984 TAATATGTGC
* * * * *
50999994 TAT TAT TATT TAT TAT TAT ATAT TAT TAT TAA AAC TAT TAT AAT AAT
1 TAT TAT TA-T TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
51000041 TAT TAT TAT TAG CAT TAT TAT TAA TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
51000073 AATACTTTTT
Statistics
Matches: 61, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
3 55 0.90
4 6 0.10
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.56
Consensus pattern (3 bp):
TAT
Found at i:51000009 original size:10 final size:10
Alignment explanation
Indices: 50999994--51000023 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
50999984 TAATATGTGC
50999994 TATTATTATT
1 TATTATTATT
*
51000004 TATTATTATA
1 TATTATTATT
51000014 TATTATTATT
1 TATTATTATT
51000024 AAAACTATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (10 bp):
TATTATTATT
Found at i:51010705 original size:13 final size:14
Alignment explanation
Indices: 51010687--51010719 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
51010677 GTTTAGTATT
51010687 AAAAATTAAT-TTA
1 AAAAATTAATGTTA
51010700 AAAAATTAATGTTA
1 AAAAATTAATGTTA
51010714 ATAAAA
1 A-AAAA
51010720 GGTGTATTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.56
14 4 0.22
15 4 0.22
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (14 bp):
AAAAATTAATGTTA
Found at i:51013798 original size:20 final size:20
Alignment explanation
Indices: 51013773--51013813 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
51013763 AAAAGTAAAT
51013773 TGAAGAGCAAGAACCGTAGG
1 TGAAGAGCAAGAACCGTAGG
51013793 TGAAGAGCAAGAACCGTAGG
1 TGAAGAGCAAGAACCGTAGG
51013813 T
1 T
51013814 TGCTTGCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.15, G:0.34, T:0.12
Consensus pattern (20 bp):
TGAAGAGCAAGAACCGTAGG
Found at i:51020805 original size:21 final size:21
Alignment explanation
Indices: 51020781--51020833 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
51020771 ATAATTACGT
51020781 TTATTTTCTTTAAATT-AAGAA
1 TTATTTT-TTTAAATTCAAGAA
* *
51020802 TTATTTTTTTAACTTCATGAA
1 TTATTTTTTTAAATTCAAGAA
*
51020823 TTATTTATTTA
1 TTATTTTTTTA
51020834 TTTTATTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 7 0.25
21 21 0.75
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.58
Consensus pattern (21 bp):
TTATTTTTTTAAATTCAAGAA
Found at i:51023975 original size:25 final size:25
Alignment explanation
Indices: 51023947--51023994 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
51023937 ATAAGCTTTG
*
51023947 AATTTGAAATAA-CTTAATTCAAATA
1 AATTT-AAATAATCTTAACTCAAATA
51023972 AATTTAAATAATCTTAACTCAAA
1 AATTTAAATAATCTTAACTCAAA
51023995 ATTAAATTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.52, C:0.10, G:0.02, T:0.35
Consensus pattern (25 bp):
AATTTAAATAATCTTAACTCAAATA
Found at i:51028788 original size:31 final size:32
Alignment explanation
Indices: 51028753--51028817 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 32
51028743 AAATAGTCAT
51028753 TAAACTATTC-AAAAGTTTTCATTTAACT-CAC
1 TAAACTATTCGAAAA-TTTTCATTTAACTGCAC
* * *
51028784 TAAACTTTTCGAAAATTTTTATTTTACTGCAC
1 TAAACTATTCGAAAATTTTCATTTAACTGCAC
51028816 TA
1 TA
51028818 TTAAGTTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
31 20 0.69
32 9 0.31
ACGTcount: A:0.35, C:0.17, G:0.05, T:0.43
Consensus pattern (32 bp):
TAAACTATTCGAAAATTTTCATTTAACTGCAC
Found at i:51031702 original size:21 final size:21
Alignment explanation
Indices: 51031678--51031719 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
51031668 TTGTTAACAT
51031678 GTGGAGTTGGATTAATAATTG
1 GTGGAGTTGGATTAATAATTG
51031699 GTGGAGTTGGATTAATAATTG
1 GTGGAGTTGGATTAATAATTG
51031720 ATTATATGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.33, T:0.38
Consensus pattern (21 bp):
GTGGAGTTGGATTAATAATTG
Found at i:51038600 original size:16 final size:16
Alignment explanation
Indices: 51038578--51038646 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
51038568 TTTGGTTCGC
51038578 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
51038594 CGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
51038610 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
51038627 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
51038643 TGTA
1 TGTA
51038647 ATAGCTAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:51038624 original size:33 final size:32
Alignment explanation
Indices: 51038578--51038646 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
51038568 TTTGGTTCGC
51038578 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
*
51038610 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGCGTATTGGATTAGAGG
51038643 TGTA
1 TGTA
51038647 ATAGCTAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 6 0.17
33 29 0.83
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (32 bp):
TGTATTGGATTAGAGGCGTATTGGATTAGAGG
Found at i:51038711 original size:44 final size:45
Alignment explanation
Indices: 51038627--51038717 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
51038617 GGATTAGAGG
* * *
51038627 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
51038672 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
51038716 TG
1 TG
51038718 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:51038903 original size:18 final size:17
Alignment explanation
Indices: 51038882--51038916 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
51038872 TTATTATTAA
*
51038882 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
51038900 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
51038917 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:51039003 original size:120 final size:120
Alignment explanation
Indices: 51038865--51040209 Score: 2573
Period size: 120 Copynumber: 11.2 Consensus size: 120
51038855 ATCATATTTA
* *
51038865 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
*
51038930 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
* **
51038985 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
51039050 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
* *
51039105 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
51039170 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
**
51039225 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
51039290 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
51039345 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
51039410 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
51039465 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
51039530 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
51039585 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAAATTCTTAATAATTA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTT-AAAAAAATTCTTAATAATTA
51039650 ATATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
65 ATATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
51039706 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
51039771 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
51039826 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAAATTCTTAATAATTA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTT-AAAAAAATTCTTAATAATTA
51039891 ATATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
65 ATATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
51039947 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
51040012 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
51040067 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
*
51040132 TATTCTTAAATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
51040187 AACATAATTATTATTAAATATAT
1 AACATAATTATTATTAAATATAT
51040210 AACTTGAAAA
Statistics
Matches: 1215, Mismatches: 8, Indels: 4
0.99 0.01 0.00
Matches are distributed among these distances:
120 975 0.80
121 240 0.20
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:51039143 original size:18 final size:17
Alignment explanation
Indices: 51039122--51039156 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
51039112 TTATTATTAA
*
51039122 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
51039140 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
51039157 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:51043310 original size:26 final size:26
Alignment explanation
Indices: 51043280--51043330 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
51043270 CCGTAAAATA
51043280 CTGCAGCTAATACCAATGACAAAAAC
1 CTGCAGCTAATACCAATGACAAAAAC
*
51043306 CTGCAGCTAATATCAATGACAAAAA
1 CTGCAGCTAATACCAATGACAAAAA
51043331 TAAATGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.47, C:0.24, G:0.12, T:0.18
Consensus pattern (26 bp):
CTGCAGCTAATACCAATGACAAAAAC
Found at i:51044313 original size:23 final size:22
Alignment explanation
Indices: 51044269--51044313 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
51044259 ATAAAAAATC
*
51044269 TATTTAAAAAAAGGTCAAATTT
1 TATTTAAAAAAAGGTAAAATTT
51044291 TATTTAAAATAAAGG-AAATATTT
1 TATTTAAAA-AAAGGTAAA-ATTT
51044314 CCACTTTGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.51, C:0.02, G:0.09, T:0.38
Consensus pattern (22 bp):
TATTTAAAAAAAGGTAAAATTT
Found at i:51046334 original size:30 final size:31
Alignment explanation
Indices: 51046300--51046401 Score: 122
Period size: 30 Copynumber: 3.4 Consensus size: 31
51046290 TTAAAAATAA
*
51046300 AAATTGCATTTTGACCCCTAAACTTTTC-CT
1 AAATTTCATTTTGACCCCTAAACTTTTCTCT
* *
51046330 AAATTTCATTTTGACCCTTAAAC-TTTCTTT
1 AAATTTCATTTTGACCCCTAAACTTTTCTCT
* *
51046360 AAATTTCACTTAGACCCCTAAAC-TTTCAT-T
1 AAATTTCATTTTGACCCCTAAACTTTTC-TCT
51046390 AAATTTCATTTT
1 AAATTTCATTTT
51046402 AATCCTAAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
29 4 0.06
30 57 0.92
31 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.04, T:0.44
Consensus pattern (31 bp):
AAATTTCATTTTGACCCCTAAACTTTTCTCT
Found at i:51046690 original size:17 final size:17
Alignment explanation
Indices: 51046668--51046714 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
51046658 TTCGAAGGAA
51046668 AAAAGAAGAAAGAGAAG
1 AAAAGAAGAAAGAGAAG
*
51046685 AAAAG-AGAAAGAGGAG
1 AAAAGAAGAAAGAGAAG
51046701 AAGAA-AAGAAAGAG
1 AA-AAGAAGAAAGAG
51046715 TACCGGCGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
16 12 0.44
17 15 0.56
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (17 bp):
AAAAGAAGAAAGAGAAG
Found at i:51046693 original size:19 final size:20
Alignment explanation
Indices: 51046665--51046714 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
51046655 TTTTTCGAAG
*
51046665 GAAAAAAGAAGA-AAGAGAA
1 GAAAAGAGAAGAGAAGAGAA
*
51046684 GAAAAGAGAA-AGAGGAGAA
1 GAAAAGAGAAGAGAAGAGAA
51046703 GAAAAGA-AAGAG
1 GAAAAGAGAAGAG
51046715 TACCGGCGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 3 0.11
19 24 0.89
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (20 bp):
GAAAAGAGAAGAGAAGAGAA
Found at i:51046775 original size:3 final size:3
Alignment explanation
Indices: 51046769--51046840 Score: 57
Period size: 3 Copynumber: 25.0 Consensus size: 3
51046759 GCTAGACTTT
*
51046769 GAA GAA GAA GAA GGAA GAA GAA GGAA GAA GAA -AA GAG GAA GAA -AA
1 GAA GAA GAA GAA -GAA GAA GAA -GAA GAA GAA GAA GAA GAA GAA GAA
*
51046814 -AA GAAA GAA -AA -AA GAA AAA GAA -AA GAA
1 GAA G-AA GAA GAA GAA GAA GAA GAA GAA GAA
51046841 ATAATAAAAA
Statistics
Matches: 58, Mismatches: 4, Indels: 14
0.76 0.05 0.18
Matches are distributed among these distances:
2 12 0.21
3 37 0.64
4 9 0.16
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:51046787 original size:10 final size:10
Alignment explanation
Indices: 51046772--51046800 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
51046762 AGACTTTGAA
51046772 GAAGAAGAAG
1 GAAGAAGAAG
51046782 GAAGAAGAAG
1 GAAGAAGAAG
51046792 GAAGAAGAA
1 GAAGAAGAA
51046801 AAGAGGAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (10 bp):
GAAGAAGAAG
Found at i:51046787 original size:13 final size:13
Alignment explanation
Indices: 51046769--51046811 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
51046759 GCTAGACTTT
51046769 GAAGAAGAAGAAG
1 GAAGAAGAAGAAG
51046782 GAAGAAGAAGGAA-
1 GAAGAAGAA-GAAG
51046795 GAAGAA-AAG-AG
1 GAAGAAGAAGAAG
51046806 GAAGAA
1 GAAGAA
51046812 AAAAGAAAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 1 0.04
11 7 0.25
12 2 0.07
13 15 0.54
14 3 0.11
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (13 bp):
GAAGAAGAAGAAG
Found at i:51046825 original size:11 final size:11
Alignment explanation
Indices: 51046796--51046841 Score: 58
Period size: 11 Copynumber: 4.2 Consensus size: 11
51046786 AAGAAGGAAG
* *
51046796 AAGAAAAGAGG
1 AAGAAAAAAGA
51046807 AAGAAAAAAGA
1 AAGAAAAAAGA
51046818 AAGAAAAAAGA
1 AAGAAAAAAGA
51046829 AA-AAGAAAAGA
1 AAGAA-AAAAGA
51046840 AA
1 AA
51046842 TAATAAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
10 2 0.06
11 30 0.94
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (11 bp):
AAGAAAAAAGA
Found at i:51046826 original size:24 final size:25
Alignment explanation
Indices: 51046769--51046837 Score: 70
Period size: 24 Copynumber: 2.8 Consensus size: 25
51046759 GCTAGACTTT
* *
51046769 GAAGAAGAAGAAGGAAG-AAGAAGGAA
1 GAAGAA-AAG-AGGAAGAAAAAAGAAA
51046795 GAAGAAAAGAGGAAGAAAAAAGAAA
1 GAAGAAAAGAGGAAGAAAAAAGAAA
**
51046820 GAA-AAAAGAAAAAGAAAA
1 GAAGAAAAGAGGAAGAAAA
51046838 GAAATAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
24 19 0.50
25 13 0.34
26 6 0.16
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (25 bp):
GAAGAAAAGAGGAAGAAAAAAGAAA
Found at i:51046828 original size:18 final size:19
Alignment explanation
Indices: 51046807--51046851 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
51046797 AGAAAAGAGG
51046807 AAGAAAAAAG-AAAGAAAA
1 AAGAAAAAAGAAAAGAAAA
*
51046825 AAG-AAAAAGAAAAGAAAT
1 AAGAAAAAAGAAAAGAAAA
*
51046843 AATAAAAAA
1 AAGAAAAAA
51046852 TATTATAACA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 6 0.26
18 12 0.52
19 5 0.22
ACGTcount: A:0.82, C:0.00, G:0.13, T:0.04
Consensus pattern (19 bp):
AAGAAAAAAGAAAAGAAAA
Found at i:51046937 original size:15 final size:14
Alignment explanation
Indices: 51046917--51046965 Score: 55
Period size: 16 Copynumber: 3.4 Consensus size: 14
51046907 GCAGCCCAAG
51046917 AAAAACAACAAAAA
1 AAAAACAACAAAAA
51046931 CAAAAACAA-AAAAA
1 -AAAAACAACAAAAA
*
51046945 AGAAACAAGCCAAAAA
1 AAAAACAA--CAAAAA
51046961 AAAAA
1 AAAAA
51046966 AGAAGAGCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
13 7 0.24
14 5 0.17
15 8 0.28
16 9 0.31
ACGTcount: A:0.82, C:0.14, G:0.04, T:0.00
Consensus pattern (14 bp):
AAAAACAACAAAAA
Found at i:51047124 original size:11 final size:10
Alignment explanation
Indices: 51047102--51047166 Score: 67
Period size: 11 Copynumber: 6.0 Consensus size: 10
51047092 GGCCCAGCAG
51047102 AGAAAAAAAA
1 AGAAAAAAAA
51047112 AGAAAAGAAAA
1 AGAAAA-AAAA
*
51047123 AGAAGAAAAAG
1 AGAA-AAAAAA
*
51047134 AGAAGGAAAAA
1 AGAA-AAAAAA
51047145 AGAAGGAAAAAA
1 AGAA--AAAAAA
51047157 AGAAAAAAAA
1 AGAAAAAAAA
51047167 GAGGTTCAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
10 12 0.25
11 24 0.50
12 12 0.25
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (10 bp):
AGAAAAAAAA
Found at i:51047537 original size:18 final size:17
Alignment explanation
Indices: 51047493--51048010 Score: 224
Period size: 17 Copynumber: 29.9 Consensus size: 17
51047483 TCAATAATCC
51047493 TCGTGCTTTT-AAAAATT
1 TCGTG-TTTTCAAAAATT
*
51047510 CTCATG-TTTCAAAAATCT
1 -TCGTGTTTTCAAAAAT-T
51047528 TCGTGTTTTC-AAAATT
1 TCGTGTTTTCAAAAATT
*
51047544 CTAGTG-TTTCAAAAATTT
1 -TCGTGTTTTCAAAAA-TT
*
51047562 TCTTGTTTTCAGAAAAAATTT
1 TCGTGTTTTC---AAAAA-TT
*
51047583 TCGTGTTTT-ATAAATT
1 TCGTGTTTTCAAAAATT
* **
51047599 TCCGTATTTTCAAAAAAA
1 T-CGTGTTTTCAAAAATT
*
51047617 TCATGTCTTTCAAAAATTT
1 TCGTGT-TTTCAAAAA-TT
*
51047636 TCGTGTTTTCAAAAAAAATGA
1 TCGTGTTTTC---AAAAAT-T
* *
51047657 CCGTG-TTCCAAAAATT
1 TCGTGTTTTCAAAAATT
***
51047673 TCCGTGTTAAAAAAAATCT
1 T-CGTGTTTTCAAAAAT-T
*
51047692 TCGTATTTTCAAAAAAATT
1 TCGTGTTTTC--AAAAATT
51047711 TCGTG-TTTCAAAAATCT
1 TCGTGTTTTCAAAAAT-T
51047728 TCGTGTTTTCAAAAATT
1 TCGTGTTTTCAAAAATT
*
51047745 TCG-GTGTTTCAAAGATTT
1 TCGTGT-TTTCAAA-AATT
*
51047763 TCGTGTTTTCAAAAACT
1 TCGTGTTTTCAAAAATT
* * * **
51047780 CCGGTGATTTAAAAAAAA
1 TC-GTGTTTTCAAAAATT
*
51047798 TCGT-TTTCTAAAAAATT
1 TCGTGTTT-TCAAAAATT
51047815 TCCGTG-TTTCAAAAATTT
1 T-CGTGTTTTCAAAAA-TT
*
51047833 TCGTGTTTTTAAAAATTT
1 TCGTGTTTTCAAAAA-TT
51047851 TCGTGTTTT-AAAAATT
1 TCGTGTTTTCAAAAATT
*
51047867 CTCGTATTTT---AAATT
1 -TCGTGTTTTCAAAAATT
** *
51047882 T--T-TTTAAGAAAAAAAT
1 TCGTGTTT--TCAAAAATT
* *
51047898 T-GT-CTTTCAAAAATG
1 TCGTGTTTTCAAAAATT
*
51047913 TCTTGTTTT-AAAAATT
1 TCGTGTTTTCAAAAATT
*
51047929 CTCGTG-TTTCAAAAAATG
1 -TCGTGTTTTC-AAAAATT
51047947 TCGTGTTTT-AAAAATTT
1 TCGTGTTTTCAAAAA-TT
**
51047964 TCGTG-TTTCTGAAATT
1 TCGTGTTTTCAAAAATT
51047980 TCCGTG-TTT-AAAAATT
1 T-CGTGTTTTCAAAAATT
51047996 CTCGTGTTTT-AAAAA
1 -TCGTGTTTTCAAAAA
51048011 AAAACTTTCA
Statistics
Matches: 387, Mismatches: 61, Indels: 105
0.70 0.11 0.19
Matches are distributed among these distances:
11 3 0.01
12 1 0.00
14 1 0.00
15 11 0.03
16 58 0.15
17 143 0.37
18 121 0.31
19 14 0.04
20 10 0.03
21 25 0.06
ACGTcount: A:0.33, C:0.12, G:0.11, T:0.43
Consensus pattern (17 bp):
TCGTGTTTTCAAAAATT
Found at i:51047555 original size:16 final size:16
Alignment explanation
Indices: 51047504--51047557 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
51047494 CGTGCTTTTA
51047504 AAAATTCTCA-TGTTTC
1 AAAATTCT-AGTGTTTC
* *
51047520 AAAAATCTTCGTGTTTTC
1 AAAATTC-TAGTG-TTTC
51047538 AAAATTCTAGTGTTTC
1 AAAATTCTAGTGTTTC
51047554 AAAA
1 AAAA
51047558 ATTTTCTTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
16 14 0.45
17 7 0.23
18 10 0.32
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (16 bp):
AAAATTCTAGTGTTTC
Found at i:51047662 original size:74 final size:74
Alignment explanation
Indices: 51047550--51047724 Score: 185
Period size: 74 Copynumber: 2.4 Consensus size: 74
51047540 AATTCTAGTG
* * *** ** * * *
51047550 TTTCAAAAATTTTCTTGTTTTCAGAAAAAATTTTCGTGTTTTATAAATTTCCGTATTTTCAAAAA
1 TTTCAAAAATTTTCGTGTTTTCAAAAAAAATGACCGTGTTCCAAAAATTTCCG--TGTTAAAAAA
51047615 AATCAT-GT-C
64 AATCATCGTAC
51047624 TTTCAAAAATTTTCGTGTTTTCAAAAAAAATGACCGTGTTCCAAAAATTTCCGTGTTAAAAAAAA
1 TTTCAAAAATTTTCGTGTTTTCAAAAAAAATGACCGTGTTCCAAAAATTTCCGTGTTAAAAAAAA
* *
51047689 TCTTCGTAT
66 TCATCGTAC
*
51047698 TTTCAAAAAAATTTCGTG-TTTCAAAAA
1 TTTC-AAAAATTTTCGTGTTTTCAAAAA
51047725 TCTTCGTGTT
Statistics
Matches: 85, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
72 13 0.15
73 2 0.02
74 58 0.68
75 12 0.14
ACGTcount: A:0.37, C:0.13, G:0.09, T:0.41
Consensus pattern (74 bp):
TTTCAAAAATTTTCGTGTTTTCAAAAAAAATGACCGTGTTCCAAAAATTTCCGTGTTAAAAAAAA
TCATCGTAC
Found at i:51047679 original size:38 final size:37
Alignment explanation
Indices: 51047514--51047757 Score: 131
Period size: 38 Copynumber: 6.7 Consensus size: 37
51047504 AAAATTCTCA
*
51047514 TGTTTCAAAAATCTT-CGTGTTTTC---AAAATTCTA-G
1 TGTTTCAAAAAT-TTCCGTGTTTTCAAAAAAAATC-ACG
* * * **
51047548 TGTTTCAAAAATTTTCTTGTTTTCAGAAAAAATTTTCG
1 TGTTTCAAAAATTTCCGTGTTTTCA-AAAAAAATCACG
* * * *
51047586 TGTTTTATAAATTTCCGTATTTTC-AAAAAAATCATG
1 TGTTTCAAAAATTTCCGTGTTTTCAAAAAAAATCACG
* * *
51047622 TCTTTCAAAAATTTTCGTGTTTTCAAAAAAAATGACCG
1 TGTTTCAAAAATTTCCGTGTTTTCAAAAAAAATCA-CG
* *
51047660 TGTTCCAAAAATTTCCGTG--TT-AAAAAAAATCTTCG
1 TGTTTCAAAAATTTCCGTGTTTTCAAAAAAAATC-ACG
* *
51047695 TATTTTCAAAAAAATTT-CGTG-TTTC---AAAAATCTTCG
1 T-GTTTC--AAAAATTTCCGTGTTTTCAAAAAAAATC-ACG
*
51047731 TGTTTTCAAAAATTTCGGTG-TTTCAAA
1 TG-TTTCAAAAATTTCCGTGTTTTCAAA
51047758 GATTTTCGTG
Statistics
Matches: 163, Mismatches: 28, Indels: 34
0.72 0.12 0.15
Matches are distributed among these distances:
33 2 0.01
34 28 0.17
35 19 0.12
36 48 0.29
37 13 0.08
38 53 0.33
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.42
Consensus pattern (37 bp):
TGTTTCAAAAATTTCCGTGTTTTCAAAAAAAATCACG
Found at i:51047752 original size:35 final size:34
Alignment explanation
Indices: 51047516--51048011 Score: 188
Period size: 35 Copynumber: 14.3 Consensus size: 34
51047506 AATTCTCATG
* *
51047516 TTTCAAAAATCTTCGTGTTTTCAAAATTC-TAGTG-
1 TTTCAAAAAT-TTCGTG-TTTCAAAAATCTTCGTGT
* *
51047550 TTTCAAAAATTTTCTTGTTTTCAGAAAAAATTTTCGTGT
1 TTTCAAAAA-TTTCGTG-TTTC---AAAAATCTTCGTGT
* * ** *
51047589 TTT-ATAAATTTCCGTATTTTCAAAAA-AATCATGT
1 TTTCAAAAATTT-CGT-GTTTCAAAAATCTTCGTGT
***
51047623 CTTTCAAAAATTTTCGTGTTTTCAAAAAAAATGACCGTG-
1 -TTTCAAAAA-TTTCGTG-TTTC---AAAAATCTTCGTGT
* ** *
51047662 TTCCAAAAATTTCCGTGTTAAAAAAAATCTTCGTAT
1 TTTCAAAAATTT-CGTGTT-TCAAAAATCTTCGTGT
51047698 TTTCAAAAAAATTTCGTGTTTCAAAAATCTTCGTGT
1 TTTC--AAAAATTTCGTGTTTCAAAAATCTTCGTGT
* *
51047734 TTTCAAAAATTTCGGTGTTTCAAAGATTTTCGTGT
1 TTTCAAAAATTTC-GTGTTTCAAAAATCTTCGTGT
* * ***
51047769 TTTCAAAAACTCCGGTGATTT-AAAAAAAATCGT-T
1 TTTCAAAAATTTC-GTG-TTTCAAAAATCTTCGTGT
* *
51047803 TTCTAAAAAATTTCCGTGTTTCAAAAATTTTCGTGT
1 TT-TCAAAAATTT-CGTGTTTCAAAAATCTTCGTGT
* * *
51047839 TTTTAAAAATTTTCGTGTTTTAAAAAT-TCTCGTAT
1 TTTCAAAAA-TTTCGTGTTTCAAAAATCT-TCGTGT
* ** *
51047874 TTT---AAATTT--T-TTTAAGAAAAAAATT-GT-C
1 TTTCAAAAATTTCGTGTTT--CAAAAATCTTCGTGT
* * *
51047902 TTTCAAAAATGTCTTGTTTTAAAAAT-TCTCGTG-
1 TTTCAAAAATTTCGTGTTTCAAAAATCT-TCGTGT
* * *
51047935 TTTCAAAAAATGTCGTGTTTTAAAAATTTTCGTG-
1 TTTC-AAAAATTTCGTGTTTCAAAAATCTTCGTGT
**
51047969 TTTCTGAAATTTCCGTGTTT-AAAAAT-TCTCGTGT
1 TTTCAAAAATTT-CGTGTTTCAAAAATCT-TCGTGT
*
51048003 TTTAAAAAA
1 TTTCAAAAA
51048012 AAACTTTCAT
Statistics
Matches: 360, Mismatches: 56, Indels: 92
0.71 0.11 0.18
Matches are distributed among these distances:
28 6 0.02
29 3 0.01
30 6 0.02
31 10 0.03
32 10 0.03
33 23 0.06
34 86 0.24
35 107 0.30
36 41 0.11
37 22 0.06
38 34 0.09
39 8 0.02
40 4 0.01
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.43
Consensus pattern (34 bp):
TTTCAAAAATTTCGTGTTTCAAAAATCTTCGTGT
Found at i:51047941 original size:33 final size:32
Alignment explanation
Indices: 51047902--51048010 Score: 128
Period size: 33 Copynumber: 3.3 Consensus size: 32
51047892 AAAAATTGTC
51047902 TTTCAAAAATGTCTTGTTTTAAAAATTCTCGTG
1 TTTCAAAAATGTC-TGTTTTAAAAATTCTCGTG
*
51047935 TTTCAAAAAATGTCGTGTTTTAAAAATTTTCGTG
1 TTTC-AAAAATGTC-TGTTTTAAAAATTCTCGTG
** * *
51047969 TTTCTGAAATTTCCGTGTTTAAAAATTCTCGTG
1 TTTCAAAAATGTCTGT-TTTAAAAATTCTCGTG
*
51048002 TTTTAAAAA
1 TTTCAAAAA
51048011 AAAACTTTCA
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
32 2 0.03
33 31 0.48
34 31 0.48
ACGTcount: A:0.31, C:0.11, G:0.13, T:0.45
Consensus pattern (32 bp):
TTTCAAAAATGTCTGTTTTAAAAATTCTCGTG
Found at i:51048014 original size:21 final size:20
Alignment explanation
Indices: 51047989--51048041 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
51047979 TTCCGTGTTT
51047989 AAAAATTCTCGTGTTTTAAAA
1 AAAAATT-TCGTGTTTTAAAA
* *
51048010 AAAAACTTTCAT-TTTTTAAA
1 AAAAA-TTTCGTGTTTTAAAA
51048030 AAAAATTTCGTG
1 AAAAATTTCGTG
51048042 CTTCAAAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
19 5 0.19
20 12 0.44
21 8 0.30
22 2 0.07
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.40
Consensus pattern (20 bp):
AAAAATTTCGTGTTTTAAAA
Found at i:51048049 original size:16 final size:17
Alignment explanation
Indices: 51048030--51048066 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
51048020 ATTTTTTAAA
51048030 AAAAATT-TCGTG-CTT
1 AAAAATTCTCGTGTCTT
*
51048045 CAAAATTCTCGTGTCTT
1 AAAAATTCTCGTGTCTT
51048062 AAAAA
1 AAAAA
51048067 AAGTTTTCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
15 6 0.33
16 5 0.28
17 7 0.39
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (17 bp):
AAAAATTCTCGTGTCTT
Found at i:51055104 original size:192 final size:192
Alignment explanation
Indices: 51054533--51055339 Score: 1535
Period size: 192 Copynumber: 4.2 Consensus size: 192
51054523 CTTTCCAAGG
* *
51054533 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
*
51054598 TAAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCGGGGCACGCCGAGGTATTTTTA
66 T-AAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTA
*
51054663 GTTTATGTTCTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
130 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
51054726 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAA-TTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
51054790 TAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
66 TAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
51054855 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
131 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
51054917 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
*
51054982 TAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
66 TAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
51055047 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
131 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
51055109 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAA-TTT
51055174 TTAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTA
65 TTAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTA
51055239 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
130 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
51055302 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
1 -AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
51055340 GGGGCACGCC
Statistics
Matches: 605, Mismatches: 6, Indels: 5
0.98 0.01 0.01
Matches are distributed among these distances:
191 185 0.31
192 194 0.32
193 189 0.31
194 37 0.06
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.35
Consensus pattern (192 bp):
AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
TAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
Found at i:51055320 original size:54 final size:54
Alignment explanation
Indices: 51055256--51055461 Score: 160
Period size: 54 Copynumber: 3.5 Consensus size: 54
51055246 TTTTAAATTG
51055256 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAATCA
1 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAATCA
** * *** ***
51055310 ACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGTTTTAA
1 ACTCATATTGCGAGAGGTGAGTTAAGCCT---------TTTA---ATTTTT-GTTT-T-TCAAAA
**
51055375 ATTG
51 ATCA
51055379 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAATCA
1 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAATCA
* *
51055433 ACTCATATTGCAAGAGGTGAGTTGAGCCT
1 ACTCATATTGCGAGAGGTGAGTTAAGCCT
51055462 CGACTCACAT
Statistics
Matches: 113, Mismatches: 24, Indels: 30
0.68 0.14 0.18
Matches are distributed among these distances:
54 58 0.51
55 1 0.01
56 4 0.04
57 6 0.05
60 1 0.01
63 1 0.01
66 6 0.05
67 4 0.04
68 1 0.01
69 31 0.27
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (54 bp):
ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAATCA
Found at i:51055325 original size:123 final size:123
Alignment explanation
Indices: 51055179--51055463 Score: 543
Period size: 123 Copynumber: 2.3 Consensus size: 123
51055169 ATTTTTTAAA
51055179 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
51055244 TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
66 TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
*
51055302 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
51055367 TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
66 TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
* *
51055425 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCG
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCG
51055464 ACTCACATGC
Statistics
Matches: 158, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
123 158 1.00
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.35
Consensus pattern (123 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
Found at i:51055502 original size:16 final size:17
Alignment explanation
Indices: 51055481--51055514 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
51055471 TGCTGAGGTA
*
51055481 TTTTCAATTTATG-TTT
1 TTTTCAATCTATGCTTT
51055497 TTTTCAATCTATGCTTT
1 TTTTCAATCTATGCTTT
51055514 T
1 T
51055515 CAAAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.65
Consensus pattern (17 bp):
TTTTCAATCTATGCTTT
Found at i:51055625 original size:176 final size:182
Alignment explanation
Indices: 51055420--51055830 Score: 480
Period size: 191 Copynumber: 2.2 Consensus size: 182
51055410 TAATTTTTGT
*
51055420 TTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-GACTCACATGCTGAGGTATTT
1 TTTTC-AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGAC-CACACGCTGAGGTATTT
* *
51055484 TC-AA-TTT-A-TGTTTTTTTCAATCTATGCT-TTTC-AAAAATCAACTTATATTGCGAGAGGTG
64 TCAAATTTTAATTGTTTTTTTCAATCTATG-TGTTTCAAAAAATCAACTCATATTGCAAGAGGTG
*
51055543 AGTTGAGCCTCAAGGCACGCTGAGGTATTTTCAATTTCTGCTTTACTAA-TTCTAC
128 AGTTGAGCCTCAAGGCACGCTGAGGTATTTTCAATTTCTACTTTAC-AATTTCTAC
* * *
51055598 TTTTC-AAATCAACTCATATTGCAAGAGGTGAGTTGAGTCTCAGGCCACACGCTGAGGTCTTTTC
1 TTTTCAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGACCACACGCTGAGGTATTTTC
* * *
51055662 AAATTCTGTTTTTAATTTCTGTTTTTTTTAATTTCTGTGTTTCAAAAAAATCAACTCATATTGCA
66 AAA------TTTTAA--T-TGTTTTTTTCAATCTATGTGTTTC-AAAAAATCAACTCATATTGCA
* * * **
51055727 AGAGGTGAGTTGAGCCTCAGGGCACGTTGAGGTATTTTCAATTTCTACTTTTCAATTTCTGT
121 AGAGGTGAGTTGAGCCTCAAGGCACGCTGAGGTATTTTCAATTTCTACTTTACAATTTCTAC
*
51055789 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TTTTC-AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCT
51055831 TTTAATTTCT
Statistics
Matches: 196, Mismatches: 17, Indels: 25
0.82 0.07 0.11
Matches are distributed among these distances:
176 52 0.27
177 4 0.02
178 5 0.03
184 3 0.02
185 1 0.01
188 1 0.01
189 19 0.10
190 2 0.01
191 76 0.39
193 33 0.17
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (182 bp):
TTTTCAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGACCACACGCTGAGGTATTTTC
AAATTTTAATTGTTTTTTTCAATCTATGTGTTTCAAAAAATCAACTCATATTGCAAGAGGTGAGT
TGAGCCTCAAGGCACGCTGAGGTATTTTCAATTTCTACTTTACAATTTCTAC
Found at i:51055678 original size:85 final size:88
Alignment explanation
Indices: 51055420--51055678 Score: 300
Period size: 91 Copynumber: 2.9 Consensus size: 88
51055410 TAATTTTTGT
* *
51055420 TTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-GACTCACATGCTGAGGTATTT
1 TTTTC-AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGC-CACACGCTGAGGTATTT
*
51055484 TCAATTTATGTTTTTTTCAA-TCTATGC
64 TCAATTTCTG-TTTTTT-AATTCTA-GC
* *
51055511 TTTTCAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAGG---CACGCTGAGGTATTT
1 TTTTC-AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-AGGCCACACGCTGAGGTATTT
**
51055573 TCAATTTCTGCTTTACTAATTCTA-C
64 TCAATTTCTG-TTTTTTAATTCTAGC
* *
51055598 TTTTC-AAATCAACTCATATTGCAAGAGGTGAGTTGAGTCTCAGGCCACACGCTGAGGTCTTTTC
1 TTTTCAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGCCACACGCTGAGGTATTTTC
*
51055662 AAATTCTG-TTTTTAATT
66 AATTTCTGTTTTTTAATT
51055679 TCTGTTTTTT
Statistics
Matches: 147, Mismatches: 15, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
84 3 0.02
85 40 0.27
87 29 0.20
88 2 0.01
89 31 0.21
91 41 0.28
93 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (88 bp):
TTTTCAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGCCACACGCTGAGGTATTTTC
AATTTCTGTTTTTTAATTCTAGC
Found at i:51055859 original size:54 final size:55
Alignment explanation
Indices: 51055774--51055991 Score: 317
Period size: 54 Copynumber: 4.1 Consensus size: 55
51055764 TCAATTTCTA
*
51055774 CTTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 CTTTTCAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
51055829 CTTTT-AATTTCTATTTTTCAAAAA-CTAACTCATATTGCGAGAGGTGAGTTGAGC
1 CTTTTCAATTTCTATTTTTCAAAAATC-AACTCATATTGCGAGAGGTGAGTTGAGC
51055883 C--TT---TTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 CTTTTCAATTTCTATTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* * *
51055934 CTTTTGCAAATTCT-GTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGC
1 CTTTT-CAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
51055989 CTT
1 CTT
51055992 GGCTCACGTG
Statistics
Matches: 150, Mismatches: 4, Indels: 18
0.87 0.02 0.10
Matches are distributed among these distances:
50 12 0.08
51 34 0.23
52 3 0.02
53 3 0.02
54 47 0.31
55 42 0.28
56 5 0.03
57 4 0.03
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38
Consensus pattern (55 bp):
CTTTTCAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
Found at i:51056257 original size:13 final size:15
Alignment explanation
Indices: 51056233--51056266 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
51056223 TTTAATTTTC
51056233 AAAATTTCAAAAA-A
1 AAAATTTCAAAAATA
51056247 AAAATTT-AAAAATA
1 AAAATTTCAAAAATA
51056261 AAAATT
1 AAAATT
51056267 ACATTTTGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.26
14 14 0.74
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (15 bp):
AAAATTTCAAAAATA
Found at i:51056296 original size:30 final size:31
Alignment explanation
Indices: 51056262--51056363 Score: 122
Period size: 30 Copynumber: 3.4 Consensus size: 31
51056252 TTAAAAATAA
*
51056262 AAATTACATTTTGACCCCTAAACTTTTC-CT
1 AAATTTCATTTTGACCCCTAAACTTTTCTCT
* *
51056292 AAATTTCATTTTGACCCTTAAAC-TTTCTTT
1 AAATTTCATTTTGACCCCTAAACTTTTCTCT
* *
51056322 AAATTTCACTTAGACCCCTAAAC-TTTCAT-T
1 AAATTTCATTTTGACCCCTAAACTTTTC-TCT
51056352 AAATTTCATTTT
1 AAATTTCATTTT
51056364 AATCCTAAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
29 4 0.06
30 57 0.92
31 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.03, T:0.44
Consensus pattern (31 bp):
AAATTTCATTTTGACCCCTAAACTTTTCTCT
Done.