Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53248092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1300000 characters in sequence are not A, C, G, or T
File 170 of 175
Found at i:51056656 original size:17 final size:18
Alignment explanation
Indices: 51056626--51056672 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 18
51056616 TTTTTTCGAA
51056626 GGAA-AAAAGAAGAAA-AG
1 GGAAGAAAAG-AGAAAGAG
51056643 GGAAGAAAAGAGAAAGAG
1 GGAAGAAAAGAGAAAGAG
51056661 GAGAAGAAAAGA
1 G-GAAGAAAAGA
51056673 AAGAGTACCG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 9 0.33
18 8 0.30
19 10 0.37
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (18 bp):
GGAAGAAAAGAGAAAGAG
Found at i:51056673 original size:17 final size:17
Alignment explanation
Indices: 51056635--51056677 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 17
51056625 AGGAAAAAAG
51056635 AAGAAA-AGGGAAGAAA
1 AAGAAAGAGGGAAGAAA
51056651 AGAGAAAGAGGAGAAG-AA
1 A-AGAAAGAGG-GAAGAAA
51056669 AAGAAAGAG
1 AAGAAAGAG
51056678 TACCGGCGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 1 0.04
17 13 0.54
18 6 0.25
19 4 0.17
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (17 bp):
AAGAAAGAGGGAAGAAA
Found at i:51056738 original size:3 final size:3
Alignment explanation
Indices: 51056732--51056792 Score: 58
Period size: 3 Copynumber: 21.0 Consensus size: 3
51056722 GCTAGACTTT
*
51056732 GAA GAA GAA GAA GGAA GAA GAA GGAA GAA GAA -AA GAG GAA GAA -AA
1 GAA GAA GAA GAA -GAA GAA GAA -GAA GAA GAA GAA GAA GAA GAA GAA
*
51056777 -AA GAA AAA GAA -AA GAA
1 GAA GAA GAA GAA GAA GAA
51056793 ATAATAAAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
2 8 0.16
3 35 0.71
4 6 0.12
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:51056750 original size:10 final size:10
Alignment explanation
Indices: 51056735--51056763 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
51056725 AGACTTTGAA
51056735 GAAGAAGAAG
1 GAAGAAGAAG
51056745 GAAGAAGAAG
1 GAAGAAGAAG
51056755 GAAGAAGAA
1 GAAGAAGAA
51056764 AAGAGGAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (10 bp):
GAAGAAGAAG
Found at i:51056750 original size:13 final size:13
Alignment explanation
Indices: 51056732--51056774 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
51056722 GCTAGACTTT
51056732 GAAGAAGAAGAAG
1 GAAGAAGAAGAAG
51056745 GAAGAAGAAGGAA-
1 GAAGAAGAA-GAAG
51056758 GAAGAA-AAG-AG
1 GAAGAAGAAGAAG
51056769 GAAGAA
1 GAAGAA
51056775 AAAAGAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 1 0.04
11 7 0.25
12 2 0.07
13 15 0.54
14 3 0.11
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (13 bp):
GAAGAAGAAGAAG
Found at i:51057068 original size:20 final size:19
Alignment explanation
Indices: 51057039--51057091 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 19
51057029 CCCAGCAGAG
51057039 AAAA-AAAAAGAAAACAAA
1 AAAAGAAAAAGAAAACAAA
**
51057057 AAGAAGAAAAAGAGAAGGAAA
1 AA-AAGAAAAAGA-AAACAAA
51057078 AAAAGAAAAA-AAAA
1 AAAAGAAAAAGAAAA
51057092 AGAGGTTCAA
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
18 4 0.14
19 3 0.10
20 15 0.52
21 7 0.24
ACGTcount: A:0.83, C:0.02, G:0.15, T:0.00
Consensus pattern (19 bp):
AAAAGAAAAAGAAAACAAA
Found at i:51057092 original size:11 final size:11
Alignment explanation
Indices: 51057039--51057094 Score: 67
Period size: 11 Copynumber: 5.0 Consensus size: 11
51057029 CCCAGCAGAG
51057039 AAAAAAAAAGA
1 AAAAAAAAAGA
*
51057050 AAACAAAAAGA
1 AAAAAAAAAGA
* *
51057061 AGAAAAAGAGA
1 AAAAAAAAAGA
*
51057072 AGGAAAAAAAGA
1 A-AAAAAAAAGA
51057084 AAAAAAAAAGA
1 AAAAAAAAAGA
51057095 GGTTCAATTC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
11 28 0.74
12 10 0.26
ACGTcount: A:0.82, C:0.02, G:0.16, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAGA
Found at i:51057231 original size:6 final size:6
Alignment explanation
Indices: 51057220--51057279 Score: 63
Period size: 6 Copynumber: 10.2 Consensus size: 6
51057210 CATTTTATGC
* *
51057220 ATATTT ATATTT ATATTT ATATTT ATATTT TTAATTT A-ATTT GATTTTT
1 ATATTT ATATTT ATATTT ATATTT ATATTT AT-ATTT ATATTT -ATATTT
51057269 AT-TTT AT-TTT A
1 ATATTT ATATTT A
51057280 AATAATTTTA
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
5 13 0.27
6 28 0.58
7 7 0.15
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (6 bp):
ATATTT
Found at i:51057453 original size:18 final size:17
Alignment explanation
Indices: 51057419--51057498 Score: 58
Period size: 17 Copynumber: 4.6 Consensus size: 17
51057409 AAAATTGTAA
* *
51057419 TTTCAATAATCCTCATG
1 TTTCAAAAATTCTCATG
*
51057436 CTTTTAAAAATTCTCATG
1 -TTTCAAAAATTCTCATG
*
51057454 TTTCAAAAA-TCTTCGTG
1 TTTCAAAAATTC-TCATG
*
51057471 TTTTC-AAAATTCT-AGTA
1 -TTTCAAAAATTCTCA-TG
51057488 TTTCAAAAATT
1 TTTCAAAAATT
51057499 TTCTTGTTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
16 6 0.12
17 24 0.48
18 20 0.40
ACGTcount: A:0.34, C:0.16, G:0.06, T:0.44
Consensus pattern (17 bp):
TTTCAAAAATTCTCATG
Found at i:51057463 original size:17 final size:18
Alignment explanation
Indices: 51057419--51057463 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
51057409 AAAATTGTAA
* *
51057419 TTTCAATAATCCTCATGC
1 TTTCAAAAATTCTCATGC
*
51057437 TTTTAAAAATTCTCATG-
1 TTTCAAAAATTCTCATGC
51057454 TTTCAAAAAT
1 TTTCAAAAAT
51057464 CTTCGTGTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
17 9 0.39
18 14 0.61
ACGTcount: A:0.36, C:0.18, G:0.04, T:0.42
Consensus pattern (18 bp):
TTTCAAAAATTCTCATGC
Found at i:51057472 original size:17 final size:17
Alignment explanation
Indices: 51057452--51057804 Score: 130
Period size: 18 Copynumber: 19.6 Consensus size: 17
51057442 AAAATTCTCA
51057452 TGTTTCAAAAATCTTCG
1 TGTTTCAAAAATCTTCG
* *
51057469 TGTTTTCAAAATTC-TAG
1 TG-TTTCAAAAATCTTCG
* * *
51057486 TATTTCAAAAATTTTCT
1 TGTTTCAAAAATCTTCG
*
51057503 TGTTTTCAGAAAAAATTTTCG
1 TG-TTTC---AAAAATCTTCG
* *
51057524 TGTTTTATAAAT-TTCCG
1 TGTTTCAAAAATCTT-CG
* *
51057541 TATTTTCAAAAAAATCAT-G
1 T-GTTTC--AAAAATCTTCG
* *
51057560 TCTTTCAAAAATTTTCG
1 TGTTTCAAAAATCTTCG
** *
51057577 TGTTTTCAAAAAAAAATGACTG
1 TG-TTTC--AAAAATCT-TC-G
51057599 TGTTTCAAAAAT-TTCCG
1 TGTTTCAAAAATCTT-CG
**
51057616 TGTTAAAAAAAAATCTTCG
1 TGTT--TCAAAAATCTTCG
* *
51057635 TATTTTCAAAAAATTTTCG
1 T-GTTTC-AAAAATCTTCG
51057654 TGTTTCAAAAATCTTCG
1 TGTTTCAAAAATCTTCG
51057671 TGTTTTCAAAAAT-TTCGG
1 TG-TTTCAAAAATCTTC-G
51057689 TGTTTCAAAGAAT-TTCG
1 TGTTTCAAA-AATCTTCG
*
51057706 TGTTTTCAAAAA-CTCCGG
1 TG-TTTCAAAAATCTTC-G
* ***
51057724 TGATTTTAAAAAAAATCG
1 TG-TTTCAAAAATCTTCG
51057742 T-TTTCTAAAAAAT-TTCCG
1 TGTTTC--AAAAATCTT-CG
*
51057760 TGTTTCAAAAATTTTCG
1 TGTTTCAAAAATCTTCG
* *
51057777 TGTTTTTAAAAATTTTCG
1 TG-TTTCAAAAATCTTCG
*
51057795 TGTTTTAAAA
1 TGTTTCAAAA
51057805 TTCTCGTATT
Statistics
Matches: 258, Mismatches: 42, Indels: 72
0.69 0.11 0.19
Matches are distributed among these distances:
16 21 0.08
17 70 0.27
18 96 0.37
19 32 0.12
20 18 0.07
21 18 0.07
22 3 0.01
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.43
Consensus pattern (17 bp):
TGTTTCAAAAATCTTCG
Found at i:51057481 original size:34 final size:34
Alignment explanation
Indices: 51057419--51057587 Score: 99
Period size: 34 Copynumber: 4.8 Consensus size: 34
51057409 AAAATTGTAA
* * * *
51057419 TTTCAATAATCCTCATGCTTTTAAAAATTCTCATG
1 TTTCAAAAATCTTCGTG-TTTTCAAAATTCTCATG
*
51057454 TTTCAAAAATCTTCGTGTTTTCAAAATTCT-AGTA
1 TTTCAAAAATCTTCGTGTTTTCAAAATTCTCA-TG
* * * *
51057488 TTTCAAAAATTTTCTTGTTTTCAGAAAAAATTTTCGTG
1 TTTCAAAAATCTTCGTGTTTTC----AAAATTCTCATG
* * * ***
51057526 TTTTATAAAT-TTCCGTATTTTCAAAAAAATCATG
1 TTTCAAAAATCTT-CGTGTTTTCAAAATTCTCATG
*
51057560 TCTTTCAAAAATTTTCGTGTTTTCAAAA
1 --TTTCAAAAATCTTCGTGTTTTCAAAA
51057588 AAAAATGACT
Statistics
Matches: 103, Mismatches: 21, Indels: 19
0.72 0.15 0.13
Matches are distributed among these distances:
33 1 0.01
34 41 0.40
35 14 0.14
36 20 0.19
37 4 0.04
38 23 0.22
ACGTcount: A:0.33, C:0.14, G:0.08, T:0.45
Consensus pattern (34 bp):
TTTCAAAAATCTTCGTGTTTTCAAAATTCTCATG
Found at i:51057525 original size:55 final size:53
Alignment explanation
Indices: 51057454--51057587 Score: 141
Period size: 55 Copynumber: 2.5 Consensus size: 53
51057444 AATTCTCATG
* ** *
51057454 TTTCAAAAATCTTCGTGTTTTCAAAA-TTCTAGTA-TTTCAAAAATTTTCTTGT-
1 TTTCAAAAATTTTCGTGTTTTCAAAATTTC-AGTATTTTCAAAAA-AATCATGTC
*
51057506 TTTCAGAAAAAATTTTCGTGTTTT-ATAAATTTCCGTATTTTCAAAAAAATCATGTC
1 TTTC---AAAAATTTTCGTGTTTTCA-AAATTTCAGTATTTTCAAAAAAATCATGTC
51057562 TTTCAAAAATTTTCGTGTTTTCAAAA
1 TTTCAAAAATTTTCGTGTTTTCAAAA
51057588 AAAAATGACT
Statistics
Matches: 69, Mismatches: 5, Indels: 15
0.78 0.06 0.17
Matches are distributed among these distances:
52 4 0.06
53 20 0.29
54 2 0.03
55 27 0.39
56 16 0.23
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.46
Consensus pattern (53 bp):
TTTCAAAAATTTTCGTGTTTTCAAAATTTCAGTATTTTCAAAAAAATCATGTC
Found at i:51057583 original size:18 final size:18
Alignment explanation
Indices: 51057437--51057913 Score: 218
Period size: 17 Copynumber: 27.2 Consensus size: 18
51057427 ATCCTCATGC
* *
51057437 TTTT-AAAAATTCTCATG
1 TTTTCAAAAATTTTCGTG
*
51057454 -TTTCAAAAATCTTCGTG
1 TTTTCAAAAATTTTCGTG
* *
51057471 TTTTC-AAAATTCTAGT-
1 TTTTCAAAAATTTTCGTG
* *
51057487 ATTTCAAAAATTTTCTTG
1 TTTTCAAAAATTTTCGTG
51057505 TTTTCAGAAAAAATTTTCGTG
1 TTTTC---AAAAATTTTCGTG
* * *
51057526 TTTT-ATAAATTTCCGTA
1 TTTTCAAAAATTTTCGTG
** *
51057543 TTTTCAAAAA-AATCATG
1 TTTTCAAAAATTTTCGTG
51057560 TCTTTCAAAAATTTTCGTG
1 T-TTTCAAAAATTTTCGTG
***
51057579 TTTTCAAAAAAAAAT-GACTG
1 TTTTC-AAAAATTTTCG--TG
*
51057599 TGTTTCAAAAATTTCCGTG
1 T-TTTCAAAAATTTTCGTG
*** * *
51057618 TTAAAAAAAAATCTTCGTA
1 TT-TTCAAAAATTTTCGTG
51057637 TTTTCAAAAAATTTTCGTG
1 TTTTC-AAAAATTTTCGTG
*
51057656 -TTTCAAAAATCTTCGTG
1 TTTTCAAAAATTTTCGTG
51057673 TTTTCAAAAA-TTTCG-G
1 TTTTCAAAAATTTTCGTG
51057689 TGTTTCAAAGAA-TTTCGTG
1 T-TTTCAAA-AATTTTCGTG
* *
51057708 TTTTCAAAAA-CTCCGGTG
1 TTTTCAAAAATTTTC-GTG
***
51057726 ATTTT-AAAAAAAATCGT-
1 -TTTTCAAAAATTTTCGTG
* *
51057743 TTTCTAAAAAATTTCCGTG
1 TTT-TCAAAAATTTTCGTG
51057762 -TTTCAAAAATTTTCGTG
1 TTTTCAAAAATTTTCGTG
*
51057779 TTTTTAAAAATTTTCGTG
1 TTTTCAAAAATTTTCGTG
* *
51057797 TTTT--AAAATTCTCGTA
1 TTTTCAAAAATTTTCGTG
51057813 TTTT---AAATTTT--T-
1 TTTTCAAAAATTTTCGTG
** **
51057825 TTTAAGAAAAAAATT-GT-
1 TTT-TCAAAAATTTTCGTG
* * * *
51057842 CTTTCAAAAAATGTCTTG
1 TTTTCAAAAATTTTCGTG
*
51057860 TTTT-AAAAATTCTCGTG
1 TTTTCAAAAATTTTCGTG
* *
51057877 -TTTCAAAAAATGTCGTG
1 TTTTCAAAAATTTTCGTG
51057894 TTTT-AAAAATTTTCGTG
1 TTTTCAAAAATTTTCGTG
51057911 TTT
1 TTT
51057914 AAAAAAAAAA
Statistics
Matches: 347, Mismatches: 76, Indels: 74
0.70 0.15 0.15
Matches are distributed among these distances:
12 3 0.01
13 1 0.00
15 6 0.02
16 41 0.12
17 123 0.35
18 100 0.29
19 44 0.13
20 8 0.02
21 21 0.06
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.44
Consensus pattern (18 bp):
TTTTCAAAAATTTTCGTG
Found at i:51057614 original size:75 final size:75
Alignment explanation
Indices: 51057488--51057664 Score: 198
Period size: 74 Copynumber: 2.4 Consensus size: 75
51057478 AATTCTAGTA
* * * ** * * * **
51057488 TTTCAAAAATTTTCTTGTTTTCAGAAAAAATTTTCGTGTTTTATAAATTTCCGTATTTTCAAAAA
1 TTTCAAAAATTTTCGTGTTTTCAAAAAAAAATGACGTGTTTCAAAAATTTCCGT-GTTAAAAAAA
51057553 AATCAT-GT-C
65 AATCATCGTAC
51057562 TTTCAAAAATTTTCGTGTTTTCAAAAAAAAATGACTGTGTTTCAAAAATTTCCGTGTTAAAAAAA
1 TTTCAAAAATTTTCGTGTTTTCAAAAAAAAATGAC-GTGTTTCAAAAATTTCCGTGTTAAAAAAA
* *
51057627 AATCTTCGTAT
65 AATCATCGTAC
51057638 TTTCAAAAAATTTTCGTG-TTTCAAAAA
1 TTTC-AAAAATTTTCGTGTTTTCAAAAA
51057665 TCTTCGTGTT
Statistics
Matches: 87, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
74 42 0.48
75 19 0.22
76 13 0.15
77 13 0.15
ACGTcount: A:0.37, C:0.12, G:0.09, T:0.42
Consensus pattern (75 bp):
TTTCAAAAATTTTCGTGTTTTCAAAAAAAAATGACGTGTTTCAAAAATTTCCGTGTTAAAAAAAA
ATCATCGTAC
Found at i:51057626 original size:38 final size:38
Alignment explanation
Indices: 51057548--51057628 Score: 101
Period size: 39 Copynumber: 2.1 Consensus size: 38
51057538 CCGTATTTTC
* **
51057548 AAAAAAATCATGTCTTTCAAAAATTTTCGTGTTTTCAA
1 AAAAAAATCATGTCTTTCAAAAATTTCCGTGTTTAAAA
* *
51057586 AAAAAAATGACTGTGTTTCAAAAATTTCCGTG-TTAAAA
1 AAAAAAATCA-TGTCTTTCAAAAATTTCCGTGTTTAAAA
51057624 AAAAA
1 AAAAA
51057629 TCTTCGTATT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 18 0.49
39 19 0.51
ACGTcount: A:0.46, C:0.11, G:0.10, T:0.33
Consensus pattern (38 bp):
AAAAAAATCATGTCTTTCAAAAATTTCCGTGTTTAAAA
Found at i:51057692 original size:35 final size:34
Alignment explanation
Indices: 51057601--51057804 Score: 169
Period size: 35 Copynumber: 5.7 Consensus size: 34
51057591 AATGACTGTG
** *
51057601 TTTCAAAAATTTCCGTGTTAAAAAAAAATCTTCGTAT
1 TTTCAAAAATTT-CGTGTT--TCAAAAATCTTCGTGT
51057638 TTTCAAAAAATTTTCGTGTTTCAAAAATCTTCGTGT
1 TTTC-AAAAA-TTTCGTGTTTCAAAAATCTTCGTGT
51057674 TTTCAAAAATTTCGGTGTTTCAAAGAAT-TTCGTGT
1 TTTCAAAAATTTC-GTGTTTCAAA-AATCTTCGTGT
* * * ***
51057709 TTTCAAAAACTCCGGTGATTTTAAAAAAAATCGT-T
1 TTTCAAAAATTTC-GTG-TTTCAAAAATCTTCGTGT
* *
51057744 TTCTAAAAAATTTCCGTGTTTCAAAAATTTTCGTGT
1 TT-TCAAAAATTT-CGTGTTTCAAAAATCTTCGTGT
* *
51057780 TTTTAAAAATTTTCGTGTTTTAAAA
1 TTTCAAAAA-TTTCGTGTTTCAAAA
51057805 TTCTCGTATT
Statistics
Matches: 140, Mismatches: 17, Indels: 22
0.78 0.09 0.12
Matches are distributed among these distances:
34 4 0.03
35 71 0.51
36 46 0.33
37 5 0.04
38 11 0.08
39 3 0.02
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.42
Consensus pattern (34 bp):
TTTCAAAAATTTCGTGTTTCAAAAATCTTCGTGT
Found at i:51057784 original size:53 final size:52
Alignment explanation
Indices: 51057598--51057788 Score: 158
Period size: 53 Copynumber: 3.6 Consensus size: 52
51057588 AAAAATGACT
* *
51057598 GTGTTTCAAAAATTTCCGTG-TTAAAAAAAAATCTTCGTATTT-TCAAAAAATTTTC
1 GTGTTTCAAAAATCTCCGTGTTTTAAAAAAAA---TCGTATTTCT-AAAAAA-TTTC
* * ** * *
51057653 GTGTTTCAAAAATCTTCGTGTTTTCAAAAATTTCGGTGTTTC-AAAGAATTTC
1 GTGTTTCAAAAATCTCCGTGTTTTAAAAAAAATC-GTATTTCTAAAAAATTTC
51057705 GTGTTTTCAAAAA-CTCCGGTGATTTTAAAAAAAATCGT-TTTCTAAAAAATTTCC
1 GTG-TTTCAAAAATCTCC-GTG-TTTTAAAAAAAATCGTATTTCTAAAAAATTT-C
* * *
51057759 GTGTTTCAAAAATTTTCGTGTTTTTAAAAA
1 GTGTTTCAAAAATCTCCGTGTTTTAAAAAA
51057789 TTTTCGTGTT
Statistics
Matches: 111, Mismatches: 16, Indels: 21
0.75 0.11 0.14
Matches are distributed among these distances:
52 23 0.21
53 41 0.37
54 22 0.20
55 18 0.16
56 7 0.06
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.41
Consensus pattern (52 bp):
GTGTTTCAAAAATCTCCGTGTTTTAAAAAAAATCGTATTTCTAAAAAATTTC
Found at i:51057923 original size:21 final size:20
Alignment explanation
Indices: 51057898--51057950 Score: 54
Period size: 19 Copynumber: 2.6 Consensus size: 20
51057888 GTCGTGTTTT
51057898 AAAAATTTTCGTGTTTAAAAA
1 AAAAATTTTCGTGTTT-AAAA
* * **
51057919 AAAAACTTTCAT-TTTTTAA
1 AAAAATTTTCGTGTTTAAAA
51057938 AAAAATTTTCGTG
1 AAAAATTTTCGTG
51057951 CTTCAAAATT
Statistics
Matches: 25, Mismatches: 6, Indels: 3
0.74 0.18 0.09
Matches are distributed among these distances:
19 12 0.48
20 3 0.12
21 10 0.40
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.42
Consensus pattern (20 bp):
AAAAATTTTCGTGTTTAAAA
Found at i:51057958 original size:17 final size:17
Alignment explanation
Indices: 51057938--51057975 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
51057928 CATTTTTTAA
*
51057938 AAAAATTTTCGTG-CTT
1 AAAAATTCTCGTGTCTT
*
51057954 CAAAATTCTCGTGTCTT
1 AAAAATTCTCGTGTCTT
51057971 AAAAA
1 AAAAA
51057976 AAAGTTTTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37
Consensus pattern (17 bp):
AAAAATTCTCGTGTCTT
Found at i:51061057 original size:19 final size:19
Alignment explanation
Indices: 51061033--51061088 Score: 94
Period size: 20 Copynumber: 2.9 Consensus size: 19
51061023 AACGACGAGC
51061033 AAAAGAAAAGAAAGAAAGA
1 AAAAGAAAAGAAAGAAAGA
51061052 AAAAGAAAAGGAAAGAAAGA
1 AAAAGAAAA-GAAAGAAAGA
*
51061072 AAAAGAAAAGAGAGAAA
1 AAAAGAAAAGAAAGAAA
51061089 AGAAGAGAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
19 16 0.46
20 19 0.54
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (19 bp):
AAAAGAAAAGAAAGAAAGA
Found at i:51061060 original size:24 final size:23
Alignment explanation
Indices: 51061033--51061102 Score: 79
Period size: 24 Copynumber: 2.9 Consensus size: 23
51061023 AACGACGAGC
51061033 AAAAGAAAAGAAAGAAAGAAAAAG
1 AAAAGAAAAGAAAGAAA-AAAAAG
*
51061057 AAAAGGAAAGAAAGAAAAAGAAA-
1 AAAAGAAAAGAAAGAAAAA-AAAG
*
51061080 AGAGAGAAAAGAAGAGAAAAAAA
1 A-AAAGAAAAGAA-AGAAAAAAA
51061103 TGGAAAGAGG
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
23 3 0.08
24 30 0.75
25 7 0.17
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (23 bp):
AAAAGAAAAGAAAGAAAAAAAAG
Found at i:51061111 original size:28 final size:28
Alignment explanation
Indices: 51061036--51061099 Score: 58
Period size: 29 Copynumber: 2.2 Consensus size: 28
51061026 GACGAGCAAA
*
51061036 AGAAAAGAAAGAAAGAAAAAGAAAAGGAA
1 AGAAAAGAAAGAAAGAAAAAGAAAA-GAG
* * *
51061065 AGAAAGAAAAAGAAA-AGAGAGAAAAGAAG
1 AGAAA-AGAAAGAAAGAAAAAGAAAAG-AG
51061094 AGAAAA
1 AGAAAA
51061100 AAATGGAAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
28 2 0.07
29 19 0.66
30 8 0.28
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (28 bp):
AGAAAAGAAAGAAAGAAAAAGAAAAGAG
Found at i:51064991 original size:27 final size:28
Alignment explanation
Indices: 51064944--51064999 Score: 87
Period size: 27 Copynumber: 2.0 Consensus size: 28
51064934 TTTTATGTTT
51064944 AATAAATATAATTAATATTTATTTTTAA
1 AATAAATATAATTAATATTTATTTTTAA
* *
51064972 AATAAAT-TTATTTATATTTATTTTTAA
1 AATAAATATAATTAATATTTATTTTTAA
51064999 A
1 A
51065000 TCCTTCAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 19 0.73
28 7 0.27
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (28 bp):
AATAAATATAATTAATATTTATTTTTAA
Found at i:51065233 original size:30 final size:29
Alignment explanation
Indices: 51065199--51065255 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
51065189 AACTACAAAT
*
51065199 AAATTTTGATTTTATGCAATTTTATACATG
1 AAATTTTGATTTGATGCAA-TTTATACATG
* *
51065229 AAATTTTTATTTGATTCAATTTATACA
1 AAATTTTGATTTGATGCAATTTATACA
51065256 AATCACTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 8 0.33
30 16 0.67
ACGTcount: A:0.35, C:0.07, G:0.07, T:0.51
Consensus pattern (29 bp):
AAATTTTGATTTGATGCAATTTATACATG
Found at i:51069733 original size:15 final size:16
Alignment explanation
Indices: 51069706--51069740 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
51069696 GAACAACTTT
*
51069706 TGTTTGAGAATAGTTA
1 TGTTTGAGAATAGCTA
51069722 TGTTTG-GAATAGCTA
1 TGTTTGAGAATAGCTA
51069737 TGTT
1 TGTT
51069741 CAAACCAAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.26, C:0.03, G:0.26, T:0.46
Consensus pattern (16 bp):
TGTTTGAGAATAGCTA
Found at i:51074476 original size:24 final size:23
Alignment explanation
Indices: 51074411--51074476 Score: 57
Period size: 24 Copynumber: 2.9 Consensus size: 23
51074401 ATTAATTGGT
*
51074411 AATAATATTA-TT-GTTAATATA
1 AATAATATTATTTGGTTAAAATA
* *
51074432 AAAAATATAAATTTGAG-TAAAATA
1 AATAATAT-TATTTG-GTTAAAATA
51074456 AATAATATTATTTGGGTTAAA
1 AATAATATTATTT-GGTTAAA
51074477 TCATGTTGGC
Statistics
Matches: 34, Mismatches: 5, Indels: 9
0.71 0.10 0.19
Matches are distributed among these distances:
21 7 0.21
22 1 0.03
23 7 0.21
24 18 0.53
25 1 0.03
ACGTcount: A:0.52, C:0.00, G:0.09, T:0.39
Consensus pattern (23 bp):
AATAATATTATTTGGTTAAAATA
Found at i:51074477 original size:23 final size:22
Alignment explanation
Indices: 51074411--51074477 Score: 57
Period size: 23 Copynumber: 3.0 Consensus size: 22
51074401 ATTAATTGGT
51074411 AATAATATTA-TT-GTTAATATA
1 AATAATATTATTTGGTTAA-ATA
* * *
51074432 AAAAATATAAATTTGAGTAAAATA
1 AATAATAT-TATTTG-GTTAAATA
51074456 AATAATATTATTTGGGTTAAAT
1 AATAATATTATTT-GGTTAAAT
51074478 CATGTTGGCA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
21 7 0.20
22 1 0.03
23 12 0.34
24 11 0.31
25 4 0.11
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (22 bp):
AATAATATTATTTGGTTAAATA
Found at i:51075062 original size:20 final size:20
Alignment explanation
Indices: 51075037--51075079 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
51075027 CAAATTGATT
51075037 AAAAAATTTTAATATATAAC
1 AAAAAATTTTAATATATAAC
51075057 AAAAAATTTTAATATATAAC
1 AAAAAATTTTAATATATAAC
51075077 AAA
1 AAA
51075080 TATAAATATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAAAATTTTAATATATAAC
Found at i:51075799 original size:24 final size:24
Alignment explanation
Indices: 51075749--51075799 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
51075739 GGATTTGTGA
*
51075749 TTGCATCTGTATCAAAATTTGCGT
1 TTGCATCTGTATCAAAATTTGAGT
* ** *
51075773 TTGCATTTGTATCTGAATTTGATT
1 TTGCATCTGTATCAAAATTTGAGT
51075797 TTG
1 TTG
51075800 TGTCAAAATC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.22, C:0.12, G:0.18, T:0.49
Consensus pattern (24 bp):
TTGCATCTGTATCAAAATTTGAGT
Found at i:51082359 original size:24 final size:24
Alignment explanation
Indices: 51082332--51082378 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
51082322 GCATATACTC
51082332 CAAACAAAAAGAGTAAA-AAAAAAT
1 CAAACAAAAAGAG-AAACAAAAAAT
*
51082356 CAAACAAATAGAGAAACAAAAAA
1 CAAACAAAAAGAGAAACAAAAAA
51082379 GAAAATAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 3 0.14
24 18 0.86
ACGTcount: A:0.74, C:0.11, G:0.09, T:0.06
Consensus pattern (24 bp):
CAAACAAAAAGAGAAACAAAAAAT
Found at i:51085355 original size:24 final size:24
Alignment explanation
Indices: 51085320--51085365 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
51085310 TCCCCTTAGC
*
51085320 AAATAAACCT-AATTTTATAAATAA
1 AAATAAAACTAAATTTTA-AAATAA
51085344 AAATAAAACTAAATTTTAAAAT
1 AAATAAAACTAAATTTTAAAAT
51085366 GTCTACAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.33
Consensus pattern (24 bp):
AAATAAAACTAAATTTTAAAATAA
Found at i:51087035 original size:18 final size:20
Alignment explanation
Indices: 51087012--51087051 Score: 66
Period size: 18 Copynumber: 2.1 Consensus size: 20
51087002 CCTCTTTTAC
51087012 ATATATTA-TTATA-TAAAT
1 ATATATTATTTATATTAAAT
51087030 ATATATTATTTATATTAAAT
1 ATATATTATTTATATTAAAT
51087050 AT
1 AT
51087052 TTCATTTCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 8 0.40
19 5 0.25
20 7 0.35
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
ATATATTATTTATATTAAAT
Found at i:51096084 original size:31 final size:31
Alignment explanation
Indices: 51096026--51096108 Score: 87
Period size: 31 Copynumber: 2.6 Consensus size: 31
51096016 TTTCCCAATT
* *
51096026 TTTTTAAAAATTCTCATTAAACCTTTCAAAA
1 TTTTAAAAAATTCTAATTAAACCTTTCAAAA
*
51096057 TTTTAAAAAATT-TAATTAAATCTTTTCAAAA
1 TTTTAAAAAATTCTAATTAAA-CCTTTCAAAA
* * *
51096088 TGTTTTATAAATTCTCATTAA
1 T-TTTAAAAAATTCTAATTAA
51096109 GCTTTTAACT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
30 7 0.16
31 21 0.49
32 9 0.21
33 6 0.14
ACGTcount: A:0.42, C:0.11, G:0.01, T:0.46
Consensus pattern (31 bp):
TTTTAAAAAATTCTAATTAAACCTTTCAAAA
Found at i:51098154 original size:21 final size:21
Alignment explanation
Indices: 51098129--51098168 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
51098119 TCTTTGAAAA
*
51098129 TATTTGTATACCTATTTGATT
1 TATTTGAATACCTATTTGATT
*
51098150 TATTTGAATACTTATTTGA
1 TATTTGAATACCTATTTGA
51098169 ATACTTATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.28, C:0.07, G:0.10, T:0.55
Consensus pattern (21 bp):
TATTTGAATACCTATTTGATT
Found at i:51098164 original size:12 final size:12
Alignment explanation
Indices: 51098129--51098178 Score: 61
Period size: 12 Copynumber: 4.4 Consensus size: 12
51098119 TCTTTGAAAA
* *
51098129 TATTTGTATACC
1 TATTTGAATACT
51098141 TATTTG-AT--T
1 TATTTGAATACT
51098150 TATTTGAATACT
1 TATTTGAATACT
51098162 TATTTGAATACT
1 TATTTGAATACT
51098174 TATTT
1 TATTT
51098179 TATGAGGCTA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
9 6 0.18
10 2 0.06
11 2 0.06
12 24 0.71
ACGTcount: A:0.28, C:0.08, G:0.08, T:0.56
Consensus pattern (12 bp):
TATTTGAATACT
Found at i:51098366 original size:93 final size:93
Alignment explanation
Indices: 51098207--51098389 Score: 339
Period size: 93 Copynumber: 2.0 Consensus size: 93
51098197 GATCTTGATT
*
51098207 GTAATTTATCTTTATCATAGCAAGAGTAAGGATTCTTTGCTGGGATGTATTAGTGTCACTGGTCA
1 GTAATTTATCTTTATCATAGCAAGAGTAAGGATTCTTTGCTGGGATGTATTAGTGTCACGGGTCA
*
51098272 AAGTGCAAAGCTCATAACCATGGCAAGA
66 AAGTGCAAAGCCCATAACCATGGCAAGA
51098300 GTAATTTATCTTTATCATAGCAAGAGTAAGGATTCTTTGCTGGGATGTATTAGTGTCACGGGTCA
1 GTAATTTATCTTTATCATAGCAAGAGTAAGGATTCTTTGCTGGGATGTATTAGTGTCACGGGTCA
*
51098365 AAGTGCAAAGCCCATGACCATGGCA
66 AAGTGCAAAGCCCATAACCATGGCA
51098390 CAAGATGCGC
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 87 1.00
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (93 bp):
GTAATTTATCTTTATCATAGCAAGAGTAAGGATTCTTTGCTGGGATGTATTAGTGTCACGGGTCA
AAGTGCAAAGCCCATAACCATGGCAAGA
Found at i:51110594 original size:21 final size:22
Alignment explanation
Indices: 51110570--51110623 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
51110560 TTTTTCAAAT
*
51110570 TAATTAAATAATATATTTTTA-
1 TAATTAAATAATATATATTTAC
*
51110591 TAATTTTAA-AATATATATTTAC
1 TAA-TTAAATAATATATATTTAC
51110613 TAATTAAATAA
1 TAATTAAATAA
51110624 GAATTTGTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
21 18 0.67
22 9 0.33
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (22 bp):
TAATTAAATAATATATATTTAC
Found at i:51111907 original size:23 final size:22
Alignment explanation
Indices: 51111881--51111939 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
51111871 ATTTAAATTT
51111881 AATTCAACCAGTTTTTTTTATCC
1 AATTCAACCAGTTTTTTTTAT-C
* *
51111904 AATTCAACTA-ATTTTTTTATC
1 AATTCAACCAGTTTTTTTTATC
*
51111925 AATTCAATCAGTTTT
1 AATTCAACCAGTTTT
51111940 ATGTCAATTC
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
21 9 0.30
22 12 0.40
23 9 0.30
ACGTcount: A:0.31, C:0.17, G:0.03, T:0.49
Consensus pattern (22 bp):
AATTCAACCAGTTTTTTTTATC
Found at i:51111939 original size:21 final size:21
Alignment explanation
Indices: 51111881--51111953 Score: 69
Period size: 20 Copynumber: 3.4 Consensus size: 21
51111871 ATTTAAATTT
*
51111881 AATTCAACCAGTTTTTTTTATCC
1 AATTCAATCAG-TTTTTTTAT-C
*
51111904 AATTCAA-CTAATTTTTTTATC
1 AATTCAATC-AGTTTTTTTATC
* *
51111925 AATTCAATCAG-TTTTATGTC
1 AATTCAATCAGTTTTTTTATC
51111945 AATTCAATC
1 AATTCAATC
51111954 TTCTTCCAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
20 16 0.36
21 9 0.20
22 11 0.25
23 8 0.18
ACGTcount: A:0.32, C:0.18, G:0.04, T:0.47
Consensus pattern (21 bp):
AATTCAATCAGTTTTTTTATC
Found at i:51112718 original size:19 final size:20
Alignment explanation
Indices: 51112676--51112723 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
51112666 AGTTTATTTT
*
51112676 ATTTTATGATTTGATTTGGA
1 ATTTTATGATTTGATTTAGA
51112696 ATTTTGATG-TTTG-TTTAGA
1 ATTTT-ATGATTTGATTTAGA
51112715 ATTTTATGA
1 ATTTTATGA
51112724 AAATTTTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 3 0.12
19 10 0.40
20 9 0.36
21 3 0.12
ACGTcount: A:0.25, C:0.00, G:0.19, T:0.56
Consensus pattern (20 bp):
ATTTTATGATTTGATTTAGA
Found at i:51113812 original size:14 final size:14
Alignment explanation
Indices: 51113795--51113838 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
51113785 TAAACTCGAG
51113795 ACCCTAGACCCTAA
1 ACCCTAGACCCTAA
*
51113809 ACCCTAAACCCTTAA
1 ACCCTAGACCC-TAA
* *
51113824 ACCCAAGATCCTAA
1 ACCCTAGACCCTAA
51113838 A
1 A
51113839 GCTAAGATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
14 14 0.56
15 11 0.44
ACGTcount: A:0.41, C:0.39, G:0.05, T:0.16
Consensus pattern (14 bp):
ACCCTAGACCCTAA
Found at i:51113826 original size:8 final size:7
Alignment explanation
Indices: 51113776--51113827 Score: 50
Period size: 7 Copynumber: 7.3 Consensus size: 7
51113766 ACTCTAAAAT
*
51113776 CCTAAAA
1 CCTAAAC
51113783 CCTAAAC
1 CCTAAAC
* * *
51113790 TCGAGAC
1 CCTAAAC
*
51113797 CCTAGAC
1 CCTAAAC
51113804 CCTAAAC
1 CCTAAAC
51113811 CCTAAAC
1 CCTAAAC
51113818 CCTTAAAC
1 CC-TAAAC
51113826 CC
1 CC
51113828 AAGATCCTAA
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
7 30 0.81
8 7 0.19
ACGTcount: A:0.38, C:0.40, G:0.06, T:0.15
Consensus pattern (7 bp):
CCTAAAC
Found at i:51118981 original size:25 final size:25
Alignment explanation
Indices: 51118934--51118982 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
51118924 TTTACATACG
* *
51118934 TTTTTTTATTTTTTATGATTTTATC
1 TTTTTTAATTTTTTATGACTTTATC
51118959 TTTTTTAATTTTTATAT-ACTTTAT
1 TTTTTTAATTTTT-TATGACTTTAT
51118983 ATTATATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 18 0.86
26 3 0.14
ACGTcount: A:0.20, C:0.04, G:0.02, T:0.73
Consensus pattern (25 bp):
TTTTTTAATTTTTTATGACTTTATC
Found at i:51119014 original size:32 final size:33
Alignment explanation
Indices: 51118972--51119049 Score: 88
Period size: 32 Copynumber: 2.4 Consensus size: 33
51118962 TTTAATTTTT
* *
51118972 ATATAC-TTTATATTATATATATATACTTATAC
1 ATATACTTTTATATTATAAATATATACATATAC
* * * *
51119004 AT-TTCTTTTATTTTGTAAATATATACATATCC
1 ATATACTTTTATATTATAAATATATACATATAC
51119036 ATATACTTTTATAT
1 ATATACTTTTATAT
51119050 CTATTTTTTA
Statistics
Matches: 36, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
31 2 0.06
32 25 0.69
33 9 0.25
ACGTcount: A:0.36, C:0.10, G:0.01, T:0.53
Consensus pattern (33 bp):
ATATACTTTTATATTATAAATATATACATATAC
Found at i:51121118 original size:7 final size:7
Alignment explanation
Indices: 51121106--51121130 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
51121096 GATAAAAATA
51121106 TAAAGAT
1 TAAAGAT
51121113 TAAAGAT
1 TAAAGAT
51121120 TAAAGAT
1 TAAAGAT
51121127 TAAA
1 TAAA
51121131 TTTATCATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.00, G:0.12, T:0.28
Consensus pattern (7 bp):
TAAAGAT
Found at i:51128240 original size:110 final size:110
Alignment explanation
Indices: 51128039--51128272 Score: 290
Period size: 110 Copynumber: 2.1 Consensus size: 110
51128029 TGATATATGT
* ** * * **
51128039 CCAAGGCAACTAATCAGTGTATGGAATTGGGGTTTCAAGAATGAAACGATGATTCCTTATGGAAA
1 CCAAGGCAACTAATCAGTATACAGAAATGGGGTTTCAAGAATGAAAAGATGATTCCCAATGGAAA
* *
51128104 AATCAACAAATCGAAATAAATAAGCAATTGCATGACAGCATAAGC
66 AATCAACAAATCGAAACAAATAAGCAATTCCATGACAGCATAAGC
* *
51128149 CCAAGGCATCTAATCGGTATACAGAAATGGGGTTTCAAGAATGAAAAGATGATTCCCAATGGAAA
1 CCAAGGCAACTAATCAGTATACAGAAATGGGGTTTCAAGAATGAAAAGATGATTCCCAATGGAAA
* * *** * *
51128214 AATCAACAAA-CGGATACAAATTAGCAATTCCATGGTGGCATATGT
66 AATCAACAAATC-GAAACAAATAAGCAATTCCATGACAGCATAAGC
51128259 CCAAGGCAACTAAT
1 CCAAGGCAACTAAT
51128273 TTCAAAAATG
Statistics
Matches: 104, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
109 1 0.01
110 103 0.99
ACGTcount: A:0.41, C:0.17, G:0.20, T:0.22
Consensus pattern (110 bp):
CCAAGGCAACTAATCAGTATACAGAAATGGGGTTTCAAGAATGAAAAGATGATTCCCAATGGAAA
AATCAACAAATCGAAACAAATAAGCAATTCCATGACAGCATAAGC
Found at i:51128463 original size:204 final size:201
Alignment explanation
Indices: 51128071--51128476 Score: 502
Period size: 204 Copynumber: 2.0 Consensus size: 201
51128061 GGAATTGGGG
* *
51128071 TTTCAAGAATGAAACGATGATTCCTTATGGAAAAATCAACAAATCGAAATAAATAAGCAATTGCA
1 TTTCAAAAATGAAACGATAATTCCTTATGGAAAAATCAACAAATCGAAATAAATAAGCAATTGCA
*
51128136 TGACAGCATAAGCCCAAGGCATCTAATCGGTATACAGAAATGGGGTTTCAAGAATGAAAAGATGA
66 TGACAGCATAAGCCCAAGGCAACTAATCGGTATACAGAAATGGGGTTTCAAGAATGAAAAGATGA
* * ***
51128201 TTCCCAATGGAAAAATCAACAAACGGATACAAATTAGCAATTCCATGGTGGCATATGTCCAAGGC
131 TTCCCAATGGAAAAATCAACAAACGGAAACAAATAAGCAATTCCATGCACGCATATGTCCAAGGC
51128266 AACTAA
196 AACTAA
* *
51128272 TTTCAAAAATGCAACGATAATTCCTTATGGAAAAAATCAACAAATGGAAATAAATAAGCAATTGC
1 TTTCAAAAATGAAACGATAATTCCTTATGG-AAAAATCAACAAATCGAAATAAATAAGCAATTGC
* * * * * *
51128337 ATGACGCCGCA-CA-TCCAAGGCAAACTAATTGGTATATGCA-AATAT-GGTTTTTAAGAATGAA
65 ATGA--CAGCATAAGCCCAAGGC-AACTAATCGGTATA--CAGAA-ATGGGGTTTCAAGAATGAA
** *
51128398 ACA-ATGATTCCCAATGGAAAAATCAACAAATC-GAAATGAATAAGCAATTGCATGACACG-ATA
124 A-AGATGATTCCCAATGGAAAAATCAACAAA-CGGAAACAAATAAGCAATTCCATG-CACGCATA
51128460 TGTCCAAGGCAACTAA
186 TGTCCAAGGCAACTAA
51128476 T
1 T
51128477 CGGTACACGG
Statistics
Matches: 176, Mismatches: 19, Indels: 17
0.83 0.09 0.08
Matches are distributed among these distances:
201 27 0.15
202 44 0.25
203 13 0.07
204 85 0.48
205 7 0.04
ACGTcount: A:0.44, C:0.17, G:0.17, T:0.23
Consensus pattern (201 bp):
TTTCAAAAATGAAACGATAATTCCTTATGGAAAAATCAACAAATCGAAATAAATAAGCAATTGCA
TGACAGCATAAGCCCAAGGCAACTAATCGGTATACAGAAATGGGGTTTCAAGAATGAAAAGATGA
TTCCCAATGGAAAAATCAACAAACGGAAACAAATAAGCAATTCCATGCACGCATATGTCCAAGGC
AACTAA
Found at i:51131569 original size:27 final size:27
Alignment explanation
Indices: 51131512--51131569 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
51131502 CAAAGAAGAA
* * *
51131512 ACTCTCCCTTAGTTGTAGCATCAACAT
1 ACTCTCACTTAGTAGTAGCATCAACAC
* *
51131539 ACTCTCACTTAGTAGTAGCATGAATAC
1 ACTCTCACTTAGTAGTAGCATCAACAC
51131566 ACTC
1 ACTC
51131570 CCCCTCAATA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (27 bp):
ACTCTCACTTAGTAGTAGCATCAACAC
Found at i:51135653 original size:26 final size:26
Alignment explanation
Indices: 51135624--51135675 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
51135614 ATTACTTAGT
51135624 ATAATTTCCATAATTCATCATTAATC
1 ATAATTTCCATAATTCATCATTAATC
51135650 ATAATTTCCATAATTCATCATTAATC
1 ATAATTTCCATAATTCATCATTAATC
51135676 CTTATTATAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.19, G:0.00, T:0.42
Consensus pattern (26 bp):
ATAATTTCCATAATTCATCATTAATC
Found at i:51148596 original size:32 final size:31
Alignment explanation
Indices: 51148537--51148596 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
51148527 TTAAAAGGAA
*
51148537 TAATAAAAATTTTCAAAAGTTTTGAAAGATT
1 TAATAAAAATTTTCAAAACTTTTGAAAGATT
* **
51148568 TAATTAAAATTTTCAGTACTTTTAGAAAG
1 TAATAAAAATTTTCAAAACTTTT-GAAAG
51148597 CTTAACTAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
31 19 0.79
32 5 0.21
ACGTcount: A:0.45, C:0.05, G:0.10, T:0.40
Consensus pattern (31 bp):
TAATAAAAATTTTCAAAACTTTTGAAAGATT
Found at i:51151281 original size:16 final size:15
Alignment explanation
Indices: 51151255--51151293 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
51151245 ACGATTTAAC
51151255 TTTTA-AAAAAAATAT
1 TTTTATAAAAAAAT-T
51151270 TTTTATAAAAAAATT
1 TTTTATAAAAAAATT
51151285 TTATTATAA
1 TT-TTATAA
51151294 GCATGAGGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 8 0.36
16 14 0.64
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
TTTTATAAAAAAATT
Found at i:51170410 original size:119 final size:119
Alignment explanation
Indices: 51170199--51170436 Score: 293
Period size: 119 Copynumber: 2.0 Consensus size: 119
51170189 TGTCTAGGAC
* * * ** *
51170199 AAATGACTACTCATTTACTATTGCAAGTAATGATCATTTTCATCATAGAAGATACAATGATGACG
1 AAATGACTAATCATTTACTATTGCAAGTAATGATCATTTTCATCACAAAAGATACAATGACAACC
*
51170264 ACAAGATAAAAATAGATCAAATTAGGAAAACA-AGTTTAATATAAAGGAATCATG
66 ACAAGATAAAAATAGATCAAATTAGGAAAACAGAG-TTAACATAAAGGAATCATG
* *
51170318 AAATGACTAATCATTTACTATTTCAAGTAAT-AGTCATTTTTATCACAAAAGATACAATGACAAC
1 AAATGACTAATCATTTACTATTGCAAGTAATGA-TCATTTTCATCACAAAAGATACAATGACAAC
** * * * *
51170382 CATGAGA-AAAAGATGGATCGAATTAGGAAAATAGAGTTAACATAAATGAATCATG
65 CACAAGATAAAA-ATAGATCAAATTAGGAAAACAGAGTTAACATAAAGGAATCATG
51170437 GATATCCTAT
Statistics
Matches: 101, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
118 5 0.05
119 94 0.93
120 2 0.02
ACGTcount: A:0.46, C:0.12, G:0.14, T:0.28
Consensus pattern (119 bp):
AAATGACTAATCATTTACTATTGCAAGTAATGATCATTTTCATCACAAAAGATACAATGACAACC
ACAAGATAAAAATAGATCAAATTAGGAAAACAGAGTTAACATAAAGGAATCATG
Found at i:51178226 original size:18 final size:20
Alignment explanation
Indices: 51178197--51178233 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
51178187 TATTATTTGG
51178197 TATTTAAGTTTGAT-TTAAA
1 TATTTAAGTTTGATATTAAA
51178216 TATTTAA-TTTGATATTAA
1 TATTTAAGTTTGATATTAA
51178234 TTTTTTTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (20 bp):
TATTTAAGTTTGATATTAAA
Found at i:51189332 original size:15 final size:16
Alignment explanation
Indices: 51189307--51189342 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
51189297 AAGTGATTTT
51189307 AAAATATATAAGCCCG
1 AAAATATATAAGCCCG
*
51189323 AAAA-ATATAAGTCCG
1 AAAATATATAAGCCCG
51189338 AAAAT
1 AAAAT
51189343 TGAAAATGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.56, C:0.14, G:0.11, T:0.19
Consensus pattern (16 bp):
AAAATATATAAGCCCG
Found at i:51204534 original size:29 final size:27
Alignment explanation
Indices: 51204462--51204534 Score: 67
Period size: 29 Copynumber: 2.5 Consensus size: 27
51204452 AAAAGAAAGT
51204462 TTCATGTGCATAATTGTACAAAATCAAAA
1 TTCATGT--ATAATTGTACAAAATCAAAA
*
51204491 TTCATGTATCAAATTGTACAATAAATCAACAG
1 TTCATGTAT--AATTGTAC-A-AAATCAA-AA
51204523 TT-ATGTATAATT
1 TTCATGTATAATT
51204535 TTAAGATTTA
Statistics
Matches: 38, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
27 2 0.05
29 19 0.50
30 1 0.03
31 13 0.34
32 3 0.08
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.36
Consensus pattern (27 bp):
TTCATGTATAATTGTACAAAATCAAAA
Found at i:51205330 original size:21 final size:21
Alignment explanation
Indices: 51205305--51205344 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
51205295 CCTTTCAAGG
51205305 TTTGGGTTTCGAGTTTTAGAT
1 TTTGGGTTTCGAGTTTTAGAT
* *
51205326 TTTGGGTTTTGATTTTTAG
1 TTTGGGTTTCGAGTTTTAG
51205345 GTTTCAGATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.12, C:0.03, G:0.28, T:0.57
Consensus pattern (21 bp):
TTTGGGTTTCGAGTTTTAGAT
Found at i:51209371 original size:31 final size:31
Alignment explanation
Indices: 51209335--51209394 Score: 95
Period size: 31 Copynumber: 1.9 Consensus size: 31
51209325 CAAAATGATC
51209335 ACTAAA-CTATTCGAAAGTTTTCATTTAAGCG
1 ACTAAATC-ATTCGAAAGTTTTCATTTAAGCG
*
51209366 ACTAAATCATTCGAAAGTTTTTATTTAAG
1 ACTAAATCATTCGAAAGTTTTCATTTAAG
51209395 TCACTAGGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
31 26 0.96
32 1 0.04
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.38
Consensus pattern (31 bp):
ACTAAATCATTCGAAAGTTTTCATTTAAGCG
Found at i:51211546 original size:38 final size:37
Alignment explanation
Indices: 51211480--51211560 Score: 153
Period size: 37 Copynumber: 2.2 Consensus size: 37
51211470 TAGTTAGTAC
*
51211480 TAAAAAATTCTAACACTTTCCGAATTTTTTTAATAAA
1 TAAAAAATTCTAACACATTCCGAATTTTTTTAATAAA
51211517 TAAAAAATTCTAACACATTCCGAATTTTTTTAATAAA
1 TAAAAAATTCTAACACATTCCGAATTTTTTTAATAAA
51211554 TAAAAAA
1 TAAAAAA
51211561 CAAGCAAATC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.48, C:0.12, G:0.02, T:0.37
Consensus pattern (37 bp):
TAAAAAATTCTAACACATTCCGAATTTTTTTAATAAA
Found at i:51213809 original size:7 final size:7
Alignment explanation
Indices: 51213797--51213824 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
51213787 TATTTTAACC
51213797 TATTATT
1 TATTATT
51213804 TATTATT
1 TATTATT
51213811 TATTATT
1 TATTATT
51213818 TATTATT
1 TATTATT
51213825 ATAGTGTAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (7 bp):
TATTATT
Found at i:51217502 original size:17 final size:17
Alignment explanation
Indices: 51217461--51217508 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
51217451 TCAAACTCAA
51217461 ACCCAAACCCAAAA-TG
1 ACCCAAACCCAAAATTG
* *
51217477 A-CTAGAACCTAAAATTG
1 ACCCA-AACCCAAAATTG
51217494 ACCCAAACCCAAAAT
1 ACCCAAACCCAAAAT
51217509 GATCGAACTA
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
15 2 0.08
16 9 0.36
17 12 0.48
18 2 0.08
ACGTcount: A:0.50, C:0.31, G:0.06, T:0.12
Consensus pattern (17 bp):
ACCCAAACCCAAAATTG
Found at i:51217503 original size:33 final size:32
Alignment explanation
Indices: 51217461--51217527 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 32
51217451 TCAAACTCAA
51217461 ACCCAAACCCAAAATGACTAGAACCTA-AAATTG
1 ACCCAAACCCAAAATGA-TAGAA-CTAGAAATTG
*
51217494 ACCCAAACCCAAAATGATCGAACTAGAAATTG
1 ACCCAAACCCAAAATGATAGAACTAGAAATTG
51217526 AC
1 AC
51217528 ACGGAATCAA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
31 3 0.09
32 12 0.38
33 17 0.53
ACGTcount: A:0.48, C:0.27, G:0.10, T:0.15
Consensus pattern (32 bp):
ACCCAAACCCAAAATGATAGAACTAGAAATTG
Found at i:51219002 original size:22 final size:22
Alignment explanation
Indices: 51218960--51219002 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
51218950 GAATGAATCT
*
51218960 TTTTTGAGCTTTTTCTGCATTG
1 TTTTTGAGCTTTTGCTGCATTG
*
51218982 TTTTTGTA-CTTTTGCTTCATT
1 TTTTTG-AGCTTTTGCTGCATT
51219003 TTCCCTTTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 17 0.94
23 1 0.06
ACGTcount: A:0.09, C:0.14, G:0.14, T:0.63
Consensus pattern (22 bp):
TTTTTGAGCTTTTGCTGCATTG
Found at i:51220941 original size:3 final size:3
Alignment explanation
Indices: 51220935--51220961 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
51220925 AAAAGAAGAA
51220935 GAG GAG GAG GAG GAG GAG GAG GAG GAG
1 GAG GAG GAG GAG GAG GAG GAG GAG GAG
51220962 TTGGTTTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.67, T:0.00
Consensus pattern (3 bp):
GAG
Found at i:51234315 original size:23 final size:21
Alignment explanation
Indices: 51234280--51234336 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 21
51234270 AAATTGTGAA
*
51234280 TTTTTTTTATTTTGTTGGAGTT
1 TTTTTTTTATTTTATT-GAGTT
*
51234302 TTTTTTTTACTTTTATTGATTT
1 TTTTTTTTA-TTTTATTGAGTT
51234324 TTTATTTTTATTT
1 TTT-TTTTTATTT
51234337 AATATTTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
22 19 0.61
23 12 0.39
ACGTcount: A:0.12, C:0.02, G:0.09, T:0.77
Consensus pattern (21 bp):
TTTTTTTTATTTTATTGAGTT
Found at i:51234438 original size:19 final size:19
Alignment explanation
Indices: 51234414--51234469 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
51234404 AAGAGAGAGA
51234414 ATTTTCTTATTTTTAAAAT
1 ATTTTCTTATTTTTAAAAT
*
51234433 ATTTTCTGATTTTTAAAAT
1 ATTTTCTTATTTTTAAAAT
51234452 ATTTT-TATATATTTTAAA
1 ATTTTCT-TAT-TTTTAAA
51234470 TTGTTTTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
18 1 0.03
19 25 0.76
20 7 0.21
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.61
Consensus pattern (19 bp):
ATTTTCTTATTTTTAAAAT
Found at i:51240392 original size:20 final size:20
Alignment explanation
Indices: 51240367--51240408 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
51240357 AATAATTAAT
51240367 AATAATATGCGAAATATGTA
1 AATAATATGCGAAATATGTA
51240387 AATAATATGCGAAATATGTA
1 AATAATATGCGAAATATGTA
51240407 AA
1 AA
51240409 CTTGATGGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.52, C:0.05, G:0.14, T:0.29
Consensus pattern (20 bp):
AATAATATGCGAAATATGTA
Found at i:51244436 original size:15 final size:15
Alignment explanation
Indices: 51244416--51244447 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
51244406 TGGGTCGTCA
51244416 AACTTCTAAGCCTAC
1 AACTTCTAAGCCTAC
51244431 AACTTCTAAGCCTAC
1 AACTTCTAAGCCTAC
51244446 AA
1 AA
51244448 ACCCAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.31, G:0.06, T:0.25
Consensus pattern (15 bp):
AACTTCTAAGCCTAC
Found at i:51244664 original size:27 final size:29
Alignment explanation
Indices: 51244606--51244671 Score: 109
Period size: 27 Copynumber: 2.3 Consensus size: 29
51244596 ATAAAAAATA
*
51244606 ACCAAAATATTATAACTTTATTTTTATTT
1 ACCAAAATATTATAACATTATTTTTATTT
51244635 ACCAAAATATTATAA-ATT-TTTTTATTT
1 ACCAAAATATTATAACATTATTTTTATTT
51244662 ACCAAAATAT
1 ACCAAAATAT
51244672 ACCAAAAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 19 0.53
28 2 0.06
29 15 0.42
ACGTcount: A:0.42, C:0.11, G:0.00, T:0.47
Consensus pattern (29 bp):
ACCAAAATATTATAACATTATTTTTATTT
Found at i:51245087 original size:19 final size:19
Alignment explanation
Indices: 51245063--51245126 Score: 85
Period size: 19 Copynumber: 3.4 Consensus size: 19
51245053 ATTAAAATAA
51245063 TTTAATTTAATAACTCTAT
1 TTTAATTTAATAACTCTAT
* *
51245082 TTTAATGTAATAA-ACTAT
1 TTTAATTTAATAACTCTAT
* *
51245100 TCTCATTTAATAACTCTAT
1 TTTAATTTAATAACTCTAT
51245119 TTTAATTT
1 TTTAATTT
51245127 TAAAAAAATT
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
18 14 0.39
19 22 0.61
ACGTcount: A:0.36, C:0.11, G:0.02, T:0.52
Consensus pattern (19 bp):
TTTAATTTAATAACTCTAT
Found at i:51245395 original size:18 final size:19
Alignment explanation
Indices: 51245356--51245414 Score: 84
Period size: 19 Copynumber: 3.2 Consensus size: 19
51245346 ATTTTATATT
51245356 TTAAATGAAAATAGAGTTA
1 TTAAATGAAAATAGAGTTA
* *
51245375 TTAAATGAGAATAG-TTTA
1 TTAAATGAAAATAGAGTTA
*
51245393 TTAAATTAAAATAGAGTTA
1 TTAAATGAAAATAGAGTTA
51245412 TTA
1 TTA
51245415 CTTAATTAGA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
18 15 0.44
19 19 0.56
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (19 bp):
TTAAATGAAAATAGAGTTA
Found at i:51246097 original size:27 final size:26
Alignment explanation
Indices: 51246058--51246110 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 26
51246048 GTGTCAGGTT
*
51246058 TTTTTTTGTATATTTTGGTAAATAAA
1 TTTTTTTATATATTTTGGTAAATAAA
51246084 TTTTTTTATAATATTTTGGTAAATAAA
1 TTTTTTTAT-ATATTTTGGTAAATAAA
51246111 AAAATTATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 8 0.32
27 17 0.68
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (26 bp):
TTTTTTTATATATTTTGGTAAATAAA
Found at i:51276183 original size:48 final size:48
Alignment explanation
Indices: 51276112--51276247 Score: 157
Period size: 48 Copynumber: 3.0 Consensus size: 48
51276102 ACTCGAATAC
*
51276112 TTTATCAGTTTTAAACAAATTATTCTTTGCATCAACAAATCTTTTCCA
1 TTTATCAGTCTTAAACAAATTATTCTTTGCATCAACAAATCTTTTCCA
* * *
51276160 TTTATCAGTCTTAAACAACTTATTCTTCGCAT---CAAA-----TAC-
1 TTTATCAGTCTTAAACAAATTATTCTTTGCATCAACAAATCTTTTCCA
51276199 TTTATCAGTCTTAAACAAATTATT-TTTCGCATCAACAAATCTTTTCCA
1 TTTATCAGTCTTAAACAAATTATTCTTT-GCATCAACAAATCTTTTCCA
51276247 T
1 T
51276248 GACATTGCAC
Statistics
Matches: 71, Mismatches: 7, Indels: 20
0.72 0.07 0.20
Matches are distributed among these distances:
38 2 0.03
39 27 0.38
40 2 0.03
42 4 0.06
45 4 0.06
47 2 0.03
48 30 0.42
ACGTcount: A:0.33, C:0.21, G:0.04, T:0.42
Consensus pattern (48 bp):
TTTATCAGTCTTAAACAAATTATTCTTTGCATCAACAAATCTTTTCCA
Found at i:51276504 original size:33 final size:34
Alignment explanation
Indices: 51276449--51276517 Score: 122
Period size: 33 Copynumber: 2.1 Consensus size: 34
51276439 AAGAAAATGA
*
51276449 TAGCCAATGATATTAGTGTAGTGAAATATGGATT
1 TAGCCAATGATATTAGTGTAGTGAAATATGAATT
51276483 TAGCCAATGATA-TAGTGTAGTGAAATATGAATT
1 TAGCCAATGATATTAGTGTAGTGAAATATGAATT
51276516 TA
1 TA
51276518 AAGTGAGGGG
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 22 0.65
34 12 0.35
ACGTcount: A:0.38, C:0.06, G:0.22, T:0.35
Consensus pattern (34 bp):
TAGCCAATGATATTAGTGTAGTGAAATATGAATT
Found at i:51281404 original size:19 final size:20
Alignment explanation
Indices: 51281375--51281413 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
51281365 ACAATTCAGT
51281375 GAAATTTGACTAAAAATTGC
1 GAAATTTGACTAAAAATTGC
51281395 GAAA-TTGACTAAAAATTGC
1 GAAATTTGACTAAAAATTGC
51281414 ATCTATAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.46, C:0.10, G:0.15, T:0.28
Consensus pattern (20 bp):
GAAATTTGACTAAAAATTGC
Found at i:51312527 original size:82 final size:82
Alignment explanation
Indices: 51312436--51312601 Score: 323
Period size: 82 Copynumber: 2.0 Consensus size: 82
51312426 GTAATTGATA
51312436 AAAAATTTCATTCTAAAGGCAACTAGCAAAGAACTATTTAATATTTTTAAACATTCATGAAGAAT
1 AAAAATTTCATTCTAAAGGCAACTAGCAAAGAACTATTTAATATTTTTAAACATTCATGAAGAAT
*
51312501 TTTATGTACTTTTATTG
66 TTTATGTACTTTAATTG
51312518 AAAAATTTCATTCTAAAGGCAACTAGCAAAGAACTATTTAATATTTTTAAACATTCATGAAGAAT
1 AAAAATTTCATTCTAAAGGCAACTAGCAAAGAACTATTTAATATTTTTAAACATTCATGAAGAAT
51312583 TTTATGTACTTTAATTG
66 TTTATGTACTTTAATTG
51312600 AA
1 AA
51312602 TGGAATAGAT
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 83 1.00
ACGTcount: A:0.42, C:0.11, G:0.10, T:0.38
Consensus pattern (82 bp):
AAAAATTTCATTCTAAAGGCAACTAGCAAAGAACTATTTAATATTTTTAAACATTCATGAAGAAT
TTTATGTACTTTAATTG
Found at i:51319190 original size:18 final size:18
Alignment explanation
Indices: 51319167--51319259 Score: 132
Period size: 18 Copynumber: 5.2 Consensus size: 18
51319157 CCCAACTACT
* *
51319167 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTGCC
51319185 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTGCC
* *
51319203 GTATACGTAAATAGTGCT
1 GTATACGTGAATAGTGCC
*
51319221 GTATATGTGAATAGTGCC
1 GTATACGTGAATAGTGCC
*
51319239 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTGCC
51319257 GTA
1 GTA
51319260 AACGGTCGTA
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 66 1.00
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (18 bp):
GTATACGTGAATAGTGCC
Found at i:51325552 original size:27 final size:26
Alignment explanation
Indices: 51325501--51325553 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
51325491 ACTCTCTCTT
*
51325501 TTTCTCTTTATTTTCCATTATCTTCTG
1 TTTCTCTTTATTTTCCA-TACCTTCTG
51325528 TTTCTCCTTCTATTTTCC-TACCTTCT
1 TTTCT-CTT-TATTTTCCATACCTTCT
51325554 CCATGTCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
27 12 0.52
28 3 0.13
29 8 0.35
ACGTcount: A:0.09, C:0.28, G:0.02, T:0.60
Consensus pattern (26 bp):
TTTCTCTTTATTTTCCATACCTTCTG
Found at i:51329567 original size:21 final size:21
Alignment explanation
Indices: 51329541--51329584 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
51329531 GTGCCAAAGA
51329541 ATGGATGAATCTGTAGAAGCC
1 ATGGATGAATCTGTAGAAGCC
51329562 ATGGATGAATCTGTAGAAGCC
1 ATGGATGAATCTGTAGAAGCC
51329583 AT
1 AT
51329585 TGTAACAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.34, C:0.14, G:0.27, T:0.25
Consensus pattern (21 bp):
ATGGATGAATCTGTAGAAGCC
Found at i:51331700 original size:16 final size:18
Alignment explanation
Indices: 51331668--51331700 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
51331658 AAGATATCAA
51331668 ACTAATAATGTTATTATC
1 ACTAATAATGTTATTATC
51331686 ACTAA-AATG-TATTAT
1 ACTAATAATGTTATTAT
51331701 AAGACTTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 4 0.27
18 5 0.33
ACGTcount: A:0.42, C:0.09, G:0.06, T:0.42
Consensus pattern (18 bp):
ACTAATAATGTTATTATC
Found at i:51343728 original size:25 final size:24
Alignment explanation
Indices: 51343670--51343731 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 24
51343660 TAAGCTACTG
* *
51343670 TTATTATTGTTATTGTATTATATA
1 TTATTATTATTATTGTATTATAGA
* * *
51343694 TTACTGTTATTTTTAGTATTATAGA
1 TTATTATTATTATT-GTATTATAGA
51343719 TTATTATTATTAT
1 TTATTATTATTAT
51343732 ATTTATTTAT
Statistics
Matches: 29, Mismatches: 8, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
24 10 0.34
25 19 0.66
ACGTcount: A:0.29, C:0.02, G:0.08, T:0.61
Consensus pattern (24 bp):
TTATTATTATTATTGTATTATAGA
Found at i:51343837 original size:25 final size:25
Alignment explanation
Indices: 51343809--51343874 Score: 64
Period size: 24 Copynumber: 2.7 Consensus size: 25
51343799 AGTTGTTTTA
51343809 TATAATAATTATTTTAAAATC-ATT
1 TATAATAATTATTTTAAAATCAATT
* * *
51343833 CTATACTATTTACTTT-AAATCAATT
1 -TATAATAATTATTTTAAAATCAATT
* *
51343858 TATATTAGTTATTTTAA
1 TATAATAATTATTTTAA
51343875 GCTCATTTCC
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
24 17 0.52
25 16 0.48
ACGTcount: A:0.39, C:0.08, G:0.02, T:0.52
Consensus pattern (25 bp):
TATAATAATTATTTTAAAATCAATT
Found at i:51352987 original size:19 final size:20
Alignment explanation
Indices: 51352931--51352978 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
51352921 ATTAAAAAGT
51352931 AAATTAGTTCATTTGTTAAAA
1 AAATTA-TTCATTTGTTAAAA
51352952 AAATTATTCATTTGTTAAAA
1 AAATTATTCATTTGTTAAAA
51352972 AAATTAT
1 AAATTAT
51352979 CTATTGTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 21 0.78
21 6 0.22
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.44
Consensus pattern (20 bp):
AAATTATTCATTTGTTAAAA
Found at i:51353736 original size:20 final size:20
Alignment explanation
Indices: 51353711--51353760 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
51353701 TGGCTTAAAA
51353711 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
51353731 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
51353748 GTGGTAGTGGATT
1 TTGGTAGTGGATT
51353761 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:51358374 original size:20 final size:20
Alignment explanation
Indices: 51358349--51358398 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
51358339 TGGCTTAAAA
51358349 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
51358369 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
51358386 GTGGTAGTGGATT
1 TTGGTAGTGGATT
51358399 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:51366417 original size:16 final size:16
Alignment explanation
Indices: 51366398--51366431 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
51366388 TTTATTCTAC
51366398 TTTACCATCTTTCTTA
1 TTTACCATCTTTCTTA
51366414 TTTACCATCTTTCTTA
1 TTTACCATCTTTCTTA
51366430 TT
1 TT
51366432 CATACTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.18, C:0.24, G:0.00, T:0.59
Consensus pattern (16 bp):
TTTACCATCTTTCTTA
Found at i:51367690 original size:18 final size:18
Alignment explanation
Indices: 51367667--51367718 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
51367657 CCATGAATTT
51367667 ATAAATAATAAC-TAAAAC
1 ATAAATAATAACAT-AAAC
*
51367685 ATAAATAA-AACATTAAC
1 ATAAATAATAACATAAAC
*
51367702 ATACAATAATAATATAA
1 ATA-AATAATAACATAA
51367719 GACTTAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
17 9 0.32
18 14 0.50
19 5 0.18
ACGTcount: A:0.65, C:0.10, G:0.00, T:0.25
Consensus pattern (18 bp):
ATAAATAATAACATAAAC
Found at i:51367791 original size:15 final size:15
Alignment explanation
Indices: 51367771--51367806 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
51367761 AACAACATGA
*
51367771 AATAATAGGAATAAT
1 AATAATAGCAATAAT
51367786 AATAATAGCAATAAT
1 AATAATAGCAATAAT
51367801 AATAAT
1 AATAAT
51367807 GATAAAAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.61, C:0.03, G:0.08, T:0.28
Consensus pattern (15 bp):
AATAATAGCAATAAT
Found at i:51379596 original size:20 final size:20
Alignment explanation
Indices: 51379571--51379620 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
51379561 TGGCTTAAAA
51379571 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
51379591 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
51379608 GTGGTAGTGGATT
1 TTGGTAGTGGATT
51379621 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:51384235 original size:20 final size:20
Alignment explanation
Indices: 51384210--51384259 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
51384200 TGGCTTAAAA
51384210 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
51384230 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
51384247 GTGGTAGTGGATT
1 TTGGTAGTGGATT
51384260 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:51389481 original size:21 final size:21
Alignment explanation
Indices: 51389455--51389495 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
51389445 ATCTGCTCAA
* *
51389455 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
51389476 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
51389496 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:51392396 original size:28 final size:29
Alignment explanation
Indices: 51392364--51392435 Score: 96
Period size: 28 Copynumber: 2.6 Consensus size: 29
51392354 AACTAATGCA
* *
51392364 ACATTTCAACAT-ATATGATAGAATTATT
1 ACATTTCAAAATCAAATGATAGAATTATT
*
51392392 ACA-TTCAAAATCAAATTATAGAATTATT
1 ACATTTCAAAATCAAATGATAGAATTATT
51392420 AC-TTTCAAAATCAAAT
1 ACATTTCAAAATCAAAT
51392436 TAAATCAAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
27 7 0.18
28 32 0.82
ACGTcount: A:0.47, C:0.12, G:0.04, T:0.36
Consensus pattern (29 bp):
ACATTTCAAAATCAAATGATAGAATTATT
Found at i:51392436 original size:28 final size:28
Alignment explanation
Indices: 51392381--51392437 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
51392371 AACATATATG
51392381 ATAGAATTATTACATTCAAAATCAAATT
1 ATAGAATTATTACATTCAAAATCAAATT
*
51392409 ATAGAATTATTACTTTCAAAATCAAATT
1 ATAGAATTATTACATTCAAAATCAAATT
51392437 A
1 A
51392438 AATCAAATCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.49, C:0.11, G:0.04, T:0.37
Consensus pattern (28 bp):
ATAGAATTATTACATTCAAAATCAAATT
Found at i:51395187 original size:73 final size:74
Alignment explanation
Indices: 51395064--51395215 Score: 261
Period size: 73 Copynumber: 2.1 Consensus size: 74
51395054 CGTAAGTATC
* * *
51395064 TGGTGTGGAAAATAGTGGTAGTAGAAAACGCGTTTCAATCGCTTTTCATTTCGGAGTCATGCTTA
1 TGGTGTGGAAAATAGCGGTACTAGAAAACGCGTTTCAATCGCTTTCCATTTCGGAGTCATGCTTA
51395129 CGGTCCATT
66 CGGTCCATT
*
51395138 TGGTGTGGAAAATAGCGGTACTAG-AAACGCGTTTCAATCGCTTTCCATTTTGGAGTCATGCTTA
1 TGGTGTGGAAAATAGCGGTACTAGAAAACGCGTTTCAATCGCTTTCCATTTCGGAGTCATGCTTA
51395202 CGGTCCATT
66 CGGTCCATT
51395211 TGGTG
1 TGGTG
51395216 CTCAACATTT
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
73 52 0.70
74 22 0.30
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (74 bp):
TGGTGTGGAAAATAGCGGTACTAGAAAACGCGTTTCAATCGCTTTCCATTTCGGAGTCATGCTTA
CGGTCCATT
Found at i:51395758 original size:7 final size:7
Alignment explanation
Indices: 51395741--51395788 Score: 51
Period size: 7 Copynumber: 6.6 Consensus size: 7
51395731 TTTTATTTTT
51395741 ATTTTAAA
1 ATTTT-AA
51395749 ATTTTTAA
1 A-TTTTAA
* *
51395757 TTTTTAT
1 ATTTTAA
*
51395764 ATTTCAA
1 ATTTTAA
51395771 ATTTTAA
1 ATTTTAA
51395778 ATTTTAA
1 ATTTTAA
51395785 ATTT
1 ATTT
51395789 AATTATTAGT
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
7 26 0.79
8 3 0.09
9 4 0.12
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (7 bp):
ATTTTAA
Found at i:51395761 original size:22 final size:22
Alignment explanation
Indices: 51395728--51395790 Score: 76
Period size: 21 Copynumber: 3.0 Consensus size: 22
51395718 TTTGAAATTT
*
51395728 ATTTTTTATTTTTAT-TTTAAA
1 ATTTTTAATTTTTATATTTAAA
*
51395749 ATTTTTAATTTTTATATTTCAA
1 ATTTTTAATTTTTATATTTAAA
* *
51395771 A-TTTTAAATTTTAAATTTAA
1 ATTTTTAATTTTTATATTTAA
51395791 TTATTAGTAT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
21 30 0.83
22 6 0.17
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (22 bp):
ATTTTTAATTTTTATATTTAAA
Found at i:51397843 original size:21 final size:22
Alignment explanation
Indices: 51397800--51397843 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
51397790 TTTCTAATAT
* **
51397800 ATTATATTATGTTATTTTTAAA
1 ATTATATAATGTTATTTCAAAA
51397822 ATTATATAAT-TTATTTCAAAA
1 ATTATATAATGTTATTTCAAAA
51397843 A
1 A
51397844 ATAAATCTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (22 bp):
ATTATATAATGTTATTTCAAAA
Found at i:51398246 original size:55 final size:55
Alignment explanation
Indices: 51398162--51398390 Score: 244
Period size: 55 Copynumber: 4.2 Consensus size: 55
51398152 CTTCTTTTGG
* * * * * * *
51398162 ATCGATTATCACGTTGGAATAGTGCTTCTTTTGAGTCAATTCTTTATATGTTTAA
1 ATCGATTGTCATGTTGGAATACTACTTCTTTTGAATCAATTCTGTATATGATTAA
* * *
51398217 ATCGATTGTCAAGTTGGAACACTACTTCTTTTGAATCAATTGTGTATATGATTAA
1 ATCGATTGTCATGTTGGAATACTACTTCTTTTGAATCAATTCTGTATATGATTAA
* * * * ** *
51398272 ATTGATTGTTATGTTGGAATACTGCTTCTTTTTAATTGATTGTGTATATGATTAA
1 ATCGATTGTCATGTTGGAATACTACTTCTTTTGAATCAATTCTGTATATGATTAA
* * * * *
51398327 ATCGATTATTATGTTGGAATATTACTTCTTTTGAATCGATTGCT-TATATGTTTAA
1 ATCGATTGTCATGTTGGAATACTACTTCTTTTGAATCAATT-CTGTATATGATTAA
51398382 ATCGATTGT
1 ATCGATTGT
51398391 TACATAACAC
Statistics
Matches: 147, Mismatches: 26, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
55 146 0.99
56 1 0.01
ACGTcount: A:0.27, C:0.10, G:0.17, T:0.46
Consensus pattern (55 bp):
ATCGATTGTCATGTTGGAATACTACTTCTTTTGAATCAATTCTGTATATGATTAA
Found at i:51398375 original size:110 final size:110
Alignment explanation
Indices: 51398174--51398392 Score: 278
Period size: 110 Copynumber: 2.0 Consensus size: 110
51398164 CGATTATCAC
* * * * *
51398174 GTTGGAATAGTGCTTCTTTTGAGTCAATTCTTTATATGTTTAAATCGATTGTCAAGTTGGAACAC
1 GTTGGAATACTGCTTCTTTTGAATCAATTCTGTATATGATTAAATCGATTATCAAGTTGGAACAC
*
51398239 TACTTCTTTTGAATCAATTGTGTATATGATTAAATTGATTGTTAT
66 TACTTCTTTTGAATCAATTGTGTATATGATTAAATCGATTGTTAT
* ** * * * * *
51398284 GTTGGAATACTGCTTCTTTTTAATTGATTGTGTATATGATTAAATCGATTATTATGTTGGAATAT
1 GTTGGAATACTGCTTCTTTTGAATCAATTCTGTATATGATTAAATCGATTATCAAGTTGGAACAC
* *
51398349 TACTTCTTTTGAATCGATTGCT-TATATGTTTAAATCGATTGTTA
66 TACTTCTTTTGAATCAATTG-TGTATATGATTAAATCGATTGTTA
51398393 CATAACACAT
Statistics
Matches: 92, Mismatches: 16, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
110 91 0.99
111 1 0.01
ACGTcount: A:0.27, C:0.09, G:0.17, T:0.47
Consensus pattern (110 bp):
GTTGGAATACTGCTTCTTTTGAATCAATTCTGTATATGATTAAATCGATTATCAAGTTGGAACAC
TACTTCTTTTGAATCAATTGTGTATATGATTAAATCGATTGTTAT
Found at i:51398616 original size:20 final size:21
Alignment explanation
Indices: 51398584--51398624 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
51398574 AATTGATTGT
51398584 TTGTTGTTTTGAATTAATTCA
1 TTGTTGTTTTGAATTAATTCA
*
51398605 TTGTTG-TTTGAATTCATTCA
1 TTGTTGTTTTGAATTAATTCA
51398625 AACTCCTACA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.22, C:0.07, G:0.15, T:0.56
Consensus pattern (21 bp):
TTGTTGTTTTGAATTAATTCA
Found at i:51412120 original size:22 final size:23
Alignment explanation
Indices: 51412074--51412120 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
51412064 TTTCTAATAT
* *
51412074 ATTATATTATGTTATTTTTATAA
1 ATTATATTATGTTATTTTAAAAA
*
51412097 ATTATA-TATTTTATTTTAAAAA
1 ATTATATTATGTTATTTTAAAAA
51412119 AT
1 AT
51412121 AAATCTATAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (23 bp):
ATTATATTATGTTATTTTAAAAA
Found at i:51412642 original size:55 final size:55
Alignment explanation
Indices: 51412436--51412643 Score: 290
Period size: 55 Copynumber: 3.8 Consensus size: 55
51412426 CTTCTTTTGG
* * * * * * *
51412436 ATCGATTATCATGTTGGAATAGTGCTTCTTTTGAGTCGATTCTTTATATGTTTAA
1 ATCGATTGTCATGTTGGAATACTACTTCTTTTGAATCGATTGTGTATATGATTAA
* *
51412491 ATCGATTGTCAAGTTGGAATACTACTTCTTTTGAATCGATTATGTATATGATTAA
1 ATCGATTGTCATGTTGGAATACTACTTCTTTTGAATCGATTGTGTATATGATTAA
* * * *
51412546 ATTGATTGTTATGTTGGAATACTGCTTCTTTTTAATCGATTGTGTATATGATTAA
1 ATCGATTGTCATGTTGGAATACTACTTCTTTTGAATCGATTGTGTATATGATTAA
*
51412601 ATCGATTGTTATGTTGGAATACTACTTCTTTTGAATCGATTGT
1 ATCGATTGTCATGTTGGAATACTACTTCTTTTGAATCGATTGT
51412644 TACATAACAC
Statistics
Matches: 136, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
55 136 1.00
ACGTcount: A:0.26, C:0.10, G:0.18, T:0.46
Consensus pattern (55 bp):
ATCGATTGTCATGTTGGAATACTACTTCTTTTGAATCGATTGTGTATATGATTAA
Found at i:51413810 original size:34 final size:34
Alignment explanation
Indices: 51413753--51413821 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 34
51413743 TGTTTATATG
* * * *
51413753 TTTAAATTGATTGTCATATTGGAATATTGCTTCT
1 TTTAAATCGATTGTCATAGTGGAATACTACTTCT
* *
51413787 TTTAAATCGATTGTTATGGTGGAATACTACTTCT
1 TTTAAATCGATTGTCATAGTGGAATACTACTTCT
51413821 T
1 T
51413822 CTTCTTTTGA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.26, C:0.10, G:0.16, T:0.48
Consensus pattern (34 bp):
TTTAAATCGATTGTCATAGTGGAATACTACTTCT
Found at i:51413906 original size:59 final size:58
Alignment explanation
Indices: 51413787--51413977 Score: 217
Period size: 59 Copynumber: 3.3 Consensus size: 58
51413777 TATTGCTTCT
* ** *
51413787 TTTAAATCGATTGTTATGGTGGAATACTACTTCTTCTTCTTTTGAATCAATTATTTATATG
1 TTTAAATCGATTGTTATGTTGGAATA-T--TAATTCTTCTTTTGAATCAATTGTTTATATG
* *
51413848 TTTAAATCGATTGTTGTGTTGGAATATTAATTGTTGCTTTTGAATCAATTGTTTATATG
1 TTTAAATCGATTGTTATGTTGGAATATTAATTCTT-CTTTTGAATCAATTGTTTATATG
* * * *
51413907 TTCAAATTGGTTGTTATGTTGGAATATT-A--CTTCTTTTGAATCGATTGTTTATATG
1 TTTAAATCGATTGTTATGTTGGAATATTAATTCTTCTTTTGAATCAATTGTTTATATG
* *
51413962 TTTAGATCAATTGTTA
1 TTTAAATCGATTGTTA
51413978 AGTAGCACAT
Statistics
Matches: 112, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
55 33 0.29
56 2 0.02
58 6 0.05
59 46 0.41
60 1 0.01
61 24 0.21
ACGTcount: A:0.26, C:0.08, G:0.16, T:0.50
Consensus pattern (58 bp):
TTTAAATCGATTGTTATGTTGGAATATTAATTCTTCTTTTGAATCAATTGTTTATATG
Found at i:51418326 original size:14 final size:14
Alignment explanation
Indices: 51418307--51418346 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
51418297 TTAATTGGCA
51418307 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
51418321 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
51418335 GAAAAATGTTTT
1 GTAAAATGTTTT
51418347 ATTTTTTTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.35, C:0.07, G:0.15, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:51418493 original size:20 final size:20
Alignment explanation
Indices: 51418468--51418506 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
51418458 GTTTTTACAT
51418468 ATATTAATAAATTTATATAC
1 ATATTAATAAATTTATATAC
*
51418488 ATATTAATAAATTTTTATA
1 ATATTAATAAATTTATATA
51418507 TTTTAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (20 bp):
ATATTAATAAATTTATATAC
Found at i:51421007 original size:14 final size:14
Alignment explanation
Indices: 51420985--51421041 Score: 50
Period size: 14 Copynumber: 4.3 Consensus size: 14
51420975 GAATATGCTG
* *
51420985 AGAAGAGAAGATGA
1 AGAACAGAAGAAGA
51420999 AGAACAGAAGAAGA
1 AGAACAGAAGAAGA
51421013 A-AA-AG--GAATGA
1 AGAACAGAAGAA-GA
*
51421024 AGAACGGAAGAAGA
1 AGAACAGAAGAAGA
51421038 AGAA
1 AGAA
51421042 GGAGCCTTAC
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
10 3 0.09
11 3 0.09
12 4 0.11
13 3 0.09
14 19 0.54
15 3 0.09
ACGTcount: A:0.61, C:0.04, G:0.32, T:0.04
Consensus pattern (14 bp):
AGAACAGAAGAAGA
Found at i:51421043 original size:25 final size:25
Alignment explanation
Indices: 51420995--51421044 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
51420985 AGAAGAGAAG
51420995 ATGAAGAACAGAAGAAGAAAAAGGA
1 ATGAAGAACAGAAGAAGAAAAAGGA
* *
51421020 ATGAAGAACGGAAGAAGAAGAAGGA
1 ATGAAGAACAGAAGAAGAAAAAGGA
51421045 GCCTTACCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.60, C:0.04, G:0.32, T:0.04
Consensus pattern (25 bp):
ATGAAGAACAGAAGAAGAAAAAGGA
Found at i:51421127 original size:18 final size:18
Alignment explanation
Indices: 51421104--51421141 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
51421094 TTTGCAACCC
51421104 AAGGGGAAGGGAAAAGGG
1 AAGGGGAAGGGAAAAGGG
*
51421122 AAGGGGAAGGGAAAGGGG
1 AAGGGGAAGGGAAAAGGG
51421140 AA
1 AA
51421142 ATGGGAGAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (18 bp):
AAGGGGAAGGGAAAAGGG
Found at i:51430263 original size:48 final size:48
Alignment explanation
Indices: 51430192--51430286 Score: 145
Period size: 48 Copynumber: 2.0 Consensus size: 48
51430182 TTCTTTGCTA
* **
51430192 AAAAACGCCTAAGTCAGCCTAACTTACAGTAATAAAGGATTCAACAGT
1 AAAAACGCCTAAGTCAGCCTAACTCACAACAATAAAGGATTCAACAGT
* *
51430240 AAAAACGCCTAAGTCAGCTTAACTCGCAACAATAAAGGATTCAACAG
1 AAAAACGCCTAAGTCAGCCTAACTCACAACAATAAAGGATTCAACAG
51430287 AATTCCCTTA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.44, C:0.22, G:0.15, T:0.19
Consensus pattern (48 bp):
AAAAACGCCTAAGTCAGCCTAACTCACAACAATAAAGGATTCAACAGT
Found at i:51430624 original size:35 final size:36
Alignment explanation
Indices: 51430584--51430655 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
51430574 TCTAGGATCA
51430584 CATATC-TCAAAAGATCACCTTCCATATTTGCCAAG
1 CATATCTTCAAAAGATCACCTTCCATATTTGCCAAG
* *
51430619 CATATCTTCAAAAGATCACTTTCCTTATTTGCCAAG
1 CATATCTTCAAAAGATCACCTTCCATATTTGCCAAG
51430655 C
1 C
51430656 TCCGGAGATG
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
35 6 0.18
36 28 0.82
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (36 bp):
CATATCTTCAAAAGATCACCTTCCATATTTGCCAAG
Found at i:51435450 original size:48 final size:48
Alignment explanation
Indices: 51435379--51435470 Score: 130
Period size: 48 Copynumber: 1.9 Consensus size: 48
51435369 TTCTTTGCTA
* * **
51435379 AAAAATGCCTAAGTCACCCTAACTTGCAGTAATAAAGGATTCAATAGT
1 AAAAACGCCTAAGTCACCCTAACTCGCAACAATAAAGGATTCAATAGT
* *
51435427 AAAAACGCCTAAGTCAGCTTAACTCGCAACAATAAAGGATTCAA
1 AAAAACGCCTAAGTCACCCTAACTCGCAACAATAAAGGATTCAA
51435471 CAGAATTCCC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 38 1.00
ACGTcount: A:0.43, C:0.21, G:0.14, T:0.22
Consensus pattern (48 bp):
AAAAACGCCTAAGTCACCCTAACTCGCAACAATAAAGGATTCAATAGT
Found at i:51435811 original size:35 final size:36
Alignment explanation
Indices: 51435771--51435842 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
51435761 TCTAGGATCA
51435771 CATATC-TCAAAAGATCACCTTCCATATTTGCCAAG
1 CATATCTTCAAAAGATCACCTTCCATATTTGCCAAG
* *
51435806 CATATCTTCAAAAGATCACTTTCCTTATTTGCCAAG
1 CATATCTTCAAAAGATCACCTTCCATATTTGCCAAG
51435842 C
1 C
51435843 TCCGGAGATG
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
35 6 0.18
36 28 0.82
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (36 bp):
CATATCTTCAAAAGATCACCTTCCATATTTGCCAAG
Found at i:51443700 original size:17 final size:17
Alignment explanation
Indices: 51443678--51443711 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
51443668 ATCCACTAAT
*
51443678 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
51443695 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
51443712 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:51448338 original size:17 final size:17
Alignment explanation
Indices: 51448316--51448349 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
51448306 ATCCACTAAT
*
51448316 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
51448333 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
51448350 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:51451719 original size:55 final size:55
Alignment explanation
Indices: 51451490--51451720 Score: 284
Period size: 55 Copynumber: 4.2 Consensus size: 55
51451480 CTTCTTTTGG
* * * * * * * * *
51451490 ATCGATTATCATGTTGGAATAGTGCTTCTTTTGAGTCAATTCTTTATATGTTTAA
1 ATCGATTGTTATGTTGGAATACTACTTCTTTTGAATCGATTGTGTATATGATTAA
* * *
51451545 ATCGATTGTCAAGTTGGAACACTACTTCTTTTGAATCGATTGTGTATATGATTAA
1 ATCGATTGTTATGTTGGAATACTACTTCTTTTGAATCGATTGTGTATATGATTAA
* * * *
51451600 ATTGATTGTTATGTTGGAATACTGCTTCTTTTTAATTGATTGTGTATATGATTAA
1 ATCGATTGTTATGTTGGAATACTACTTCTTTTGAATCGATTGTGTATATGATTAA
* *
51451655 ATCGATTGTTATGTTGGAATACTACTTCTTTTGAATCGA-TGATTTATATGTTTAA
1 ATCGATTGTTATGTTGGAATACTACTTCTTTTGAATCGATTG-TGTATATGATTAA
51451710 ATCGATTGTTA
1 ATCGATTGTTA
51451721 CATAACACAT
Statistics
Matches: 152, Mismatches: 23, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
54 2 0.01
55 150 0.99
ACGTcount: A:0.27, C:0.10, G:0.17, T:0.46
Consensus pattern (55 bp):
ATCGATTGTTATGTTGGAATACTACTTCTTTTGAATCGATTGTGTATATGATTAA
Found at i:51455234 original size:42 final size:42
Alignment explanation
Indices: 51455182--51455297 Score: 187
Period size: 42 Copynumber: 2.8 Consensus size: 42
51455172 TGGTTTTCTG
*
51455182 TTAACTCAGCTTCGTCCTGATCCAGCTTCAGTTTCTTCTCTT
1 TTAAATCAGCTTCGTCCTGATCCAGCTTCAGTTTCTTCTCTT
51455224 TTAAATCAGCTTCGTCCTGATCCAGCTTCAGTTTCTTCTCTT
1 TTAAATCAGCTTCGTCCTGATCCAGCTTCAGTTTCTTCTCTT
* * **
51455266 TTAAGTCAGCTTCATCCTTCTCCAGCTTCAGT
1 TTAAATCAGCTTCGTCCTGATCCAGCTTCAGT
51455298 CTGTCTTTTC
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 69 1.00
ACGTcount: A:0.16, C:0.30, G:0.12, T:0.41
Consensus pattern (42 bp):
TTAAATCAGCTTCGTCCTGATCCAGCTTCAGTTTCTTCTCTT
Found at i:51463481 original size:64 final size:64
Alignment explanation
Indices: 51463403--51463530 Score: 256
Period size: 64 Copynumber: 2.0 Consensus size: 64
51463393 CACCTCCAGA
51463403 AGACTGATATAGACGCTTTCATTGTAATAGGAGTTTTAGTTTTATTTATTTATTATATCAGGTT
1 AGACTGATATAGACGCTTTCATTGTAATAGGAGTTTTAGTTTTATTTATTTATTATATCAGGTT
51463467 AGACTGATATAGACGCTTTCATTGTAATAGGAGTTTTAGTTTTATTTATTTATTATATCAGGTT
1 AGACTGATATAGACGCTTTCATTGTAATAGGAGTTTTAGTTTTATTTATTTATTATATCAGGTT
51463531 TTATTAAGAG
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 64 1.00
ACGTcount: A:0.28, C:0.08, G:0.17, T:0.47
Consensus pattern (64 bp):
AGACTGATATAGACGCTTTCATTGTAATAGGAGTTTTAGTTTTATTTATTTATTATATCAGGTT
Found at i:51467486 original size:21 final size:21
Alignment explanation
Indices: 51467457--51467499 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
51467447 TGGCTAAGAG
*
51467457 AACTGATTGGGCAAGAATGAC
1 AACTAATTGGGCAAGAATGAC
* *
51467478 AACTAATTGGGTAAGAGTGAC
1 AACTAATTGGGCAAGAATGAC
51467499 A
1 A
51467500 CGTTTCGCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.12, G:0.28, T:0.21
Consensus pattern (21 bp):
AACTAATTGGGCAAGAATGAC
Found at i:51467686 original size:21 final size:20
Alignment explanation
Indices: 51467652--51467693 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
51467642 AATTCTAAAC
*
51467652 AAATTATCAAAAAATTATTT
1 AAATTATCAAAAAAATATTT
*
51467672 AAATTTTCAAAAAAAATATTT
1 AAATTATC-AAAAAAATATTT
51467693 A
1 A
51467694 TTTTCTAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (20 bp):
AAATTATCAAAAAAATATTT
Done.