Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53248092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1300000 characters in sequence are not A, C, G, or T
File 26 of 175
Found at i:6898984 original size:6 final size:6
Alignment explanation
Indices: 6898924--6898983 Score: 59
Period size: 6 Copynumber: 9.7 Consensus size: 6
6898914 AAAGGAAAGA
* * *
6898924 AAAATC AAAATC AAAATC AAAGTC AAAATG AAAATGAA AAAATC AAAAATC
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAAT--C AAAATC -AAAATC
6898975 AAAAT- AAAA
1 AAAATC AAAA
6898984 AAAACAAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
5 4 0.09
6 31 0.67
7 6 0.13
8 5 0.11
ACGTcount: A:0.70, C:0.10, G:0.05, T:0.15
Consensus pattern (6 bp):
AAAATC
Found at i:6899049 original size:18 final size:18
Alignment explanation
Indices: 6899028--6899064 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
6899018 TCAAGATCAA
6899028 AATGAA-AATGAGAAAAAG
1 AATGAAGAATGA-AAAAAG
6899046 AATGAAGAATGAAAAAAG
1 AATGAAGAATGAAAAAAG
6899064 A
1 A
6899065 GAAATTTAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.68, C:0.00, G:0.22, T:0.11
Consensus pattern (18 bp):
AATGAAGAATGAAAAAAG
Found at i:6899994 original size:12 final size:13
Alignment explanation
Indices: 6899973--6900011 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
6899963 GTCAGAAAAT
6899973 ATGAAAAATGAAA
1 ATGAAAAATGAAA
6899986 ATG-AAAATGAAA
1 ATGAAAAATGAAA
6899998 ATGAAAAATGAAA
1 ATGAAAAATGAAA
6900011 A
1 A
6900012 ATGGAAAGGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 12 0.48
13 13 0.52
ACGTcount: A:0.69, C:0.00, G:0.15, T:0.15
Consensus pattern (13 bp):
ATGAAAAATGAAA
Found at i:6900018 original size:8 final size:7
Alignment explanation
Indices: 6899967--6900014 Score: 66
Period size: 6 Copynumber: 7.1 Consensus size: 7
6899957 CTCTAAGTCA
6899967 GAAAATAT
1 GAAAA-AT
6899975 GAAAAAT
1 GAAAAAT
6899982 G-AAAAT
1 GAAAAAT
6899988 G-AAAAT
1 GAAAAAT
6899994 G-AAAAT
1 GAAAAAT
6900000 GAAAAAT
1 GAAAAAT
6900007 GAAAAAT
1 GAAAAAT
6900014 G
1 G
6900015 GAAAGGCTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
6 18 0.46
7 16 0.41
8 5 0.13
ACGTcount: A:0.67, C:0.00, G:0.17, T:0.17
Consensus pattern (7 bp):
GAAAAAT
Found at i:6901237 original size:43 final size:43
Alignment explanation
Indices: 6901187--6901398 Score: 169
Period size: 43 Copynumber: 4.9 Consensus size: 43
6901177 AAGATTGCGG
6901187 ATCTTATCTTCCCCAGGAGTAGGGAAACAGATCTAAGCGGCGA
1 ATCTTATCTTCCCCAGGAGTAGGGAAACAGATCTAAGCGGCGA
* * * **
6901230 ATCTTATCTTCCCCAAGAGTAGGGAAATAGATTTAAGCCACCGA
1 ATCTTATCTTCCCCAGGAGTAGGGAAACAGATCTAAG-CGGCGA
* * * * ** * ** *
6901274 ACCTTATC-TCCCTGAGCAGCAGCGG-AGTAGGT-TAAAGATTGCGG
1 ATCTTATCTTCCC-CAGGAGTAG-GGAAACAGATCT-AAG-CGGCGA
*
6901318 ATCTTATCTTCCCCAGGAGTAGGGAAACAGATCTAAACGGCGA
1 ATCTTATCTTCCCCAGGAGTAGGGAAACAGATCTAAGCGGCGA
* * * * *
6901361 GTCTTATCTTCCTCAGGGGTAGGGAAACATATTTAAGC
1 ATCTTATCTTCCCCAGGAGTAGGGAAACAGATCTAAGC
6901399 CACAAGTCCT
Statistics
Matches: 128, Mismatches: 34, Indels: 14
0.73 0.19 0.08
Matches are distributed among these distances:
43 76 0.59
44 45 0.35
45 7 0.05
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (43 bp):
ATCTTATCTTCCCCAGGAGTAGGGAAACAGATCTAAGCGGCGA
Found at i:6901562 original size:44 final size:45
Alignment explanation
Indices: 6901514--6901894 Score: 238
Period size: 44 Copynumber: 8.2 Consensus size: 45
6901504 AGTGTAAGGA
* *
6901514 AGTAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTACAGTGA-
1 AGTAGATTGAAGCCGATAATCTTATCTCCCTGAAGTTACAGTGAG
* * ** ** **
6901558 AGTAGATTAAAACAAAGGATCTTATCTCTTTGAAGTTACAGTCGAG
1 AGTAGATTGAAGCCGATAATCTTATCTCCCTGAAGTTACAGT-GAG
*
6901604 TAGATCGCATCCGATTGAAGCCAGA-AATCTTATTTCCCTGAAGTTACAGTG-G
1 -AG-T---A---GATTGAAGCC-GATAATCTTATCTCCCTGAAGTTACAGTGAG
*
6901656 AGTAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTACAGT-AG
1 AGTAGATTGAAGCCGATAATCTTATCTCCCTGAAGTTACAGTGAG
* * * ** ** *
6901700 AGCAGATTAAAACAAAGGATCTTATCTCTCTGAAGTTACAGTAGAG
1 AGTAGATTGAAGCCGATAATCTTATCTCCCTGAAGTTACAGT-GAG
6901746 TAGATCGCATCCGATTGAAGCCAGA-AATCTTATCTCCCTGAAGTTACAGT-AG
1 -AG-T---A---GATTGAAGCC-GATAATCTTATCTCCCTGAAGTTACAGTGAG
* * *
6901798 AGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTACAGTG-G
1 AGTAGATTGAAGCCGATAATCTTATCTCCCTGAAGTTACAGTGAG
** * * * ** * *
6901842 AGCGGATTAAAACAGAGGATCTTATCTCTCTGAAGTTATAGT-AG
1 AGTAGATTGAAGCCGATAATCTTATCTCCCTGAAGTTACAGTGAG
6901886 AGTAGATTG
1 AGTAGATTG
6901895 CATCCGATTG
Statistics
Matches: 260, Mismatches: 50, Indels: 54
0.71 0.14 0.15
Matches are distributed among these distances:
43 4 0.02
44 174 0.67
45 2 0.01
46 2 0.01
47 6 0.02
48 1 0.00
50 1 0.00
51 6 0.02
52 3 0.01
53 1 0.00
54 58 0.22
55 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (45 bp):
AGTAGATTGAAGCCGATAATCTTATCTCCCTGAAGTTACAGTGAG
Found at i:6901690 original size:98 final size:98
Alignment explanation
Indices: 6901518--6901706 Score: 227
Period size: 98 Copynumber: 1.9 Consensus size: 98
6901508 TAAGGAAGTA
* * *
6901518 GATTGAAGTCGATAATCCTATCTCCCTGAAGTTACAGTGAAGTAGATTAAAACAAAGGATCTTAT
1 GATTGAAGCCGATAATCCTATCTCCCTGAAGTTACAGTGAAGTAGATTAAAACAAAGAATCCTAT
** * *
6901583 CTCTTTGAAGTTACAGTCGAGTAGATCGCATCC
66 CTCCCTGAAGTTACAGTAGAGCAGATCGCATCC
* * * * * ** *
6901616 GATTGAAGCCAGA-AATCTTATTTCCCTGAAGTTACAGTGGAGTAGATTGAAGCCGATAATCCTA
1 GATTGAAGCC-GATAATCCTATCTCCCTGAAGTTACAGTGAAGTAGATTAAAACAAAGAATCCTA
6901680 TCTCCCTGAAGTTACAGTAGAGCAGAT
65 TCTCCCTGAAGTTACAGTAGAGCAGAT
6901707 TAAAACAAAG
Statistics
Matches: 75, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
98 73 0.97
99 2 0.03
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.29
Consensus pattern (98 bp):
GATTGAAGCCGATAATCCTATCTCCCTGAAGTTACAGTGAAGTAGATTAAAACAAAGAATCCTAT
CTCCCTGAAGTTACAGTAGAGCAGATCGCATCC
Found at i:6901770 original size:142 final size:142
Alignment explanation
Indices: 6901517--6902035 Score: 704
Period size: 142 Copynumber: 3.7 Consensus size: 142
6901507 GTAAGGAAGT
* * *
6901517 AGATTGAAGTCGATAATCCTATCTCCCTGAAGTTACAGTGAAGTAGATTAAAACAAAGGATCTTA
1 AGATTGAAGCCGATAATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAAAGGATCTTA
* * *
6901582 TCTCTTTGAAGTTACAGTCGAGTAGATCGCATCCGATTGAAGCCAGAAATCTTATTTCCCTGAAG
66 TCTCTCTGAAGTTACAGTAGAGTAGATCGCATCCGATTGAAGCCAGAAATCTTATCTCCCTGAAG
*
6901647 TTACAGTGGAGT
131 TTACAGTGGAGC
*
6901659 AGATTGAAGCCGATAATCCTATCTCCCTGAAGTTACAGTAGAGCAGATTAAAACAAAGGATCTTA
1 AGATTGAAGCCGATAATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAAAGGATCTTA
6901724 TCTCTCTGAAGTTACAGTAGAGTAGATCGCATCCGATTGAAGCCAGAAATCTTATCTCCCTGAAG
66 TCTCTCTGAAGTTACAGTAGAGTAGATCGCATCCGATTGAAGCCAGAAATCTTATCTCCCTGAAG
*
6901789 TTACAGTAGAGC
131 TTACAGTGGAGC
* * *
6901801 AGATTAAAGCCGATAATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACAGAGGATCTTA
1 AGATTGAAGCCGATAATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAAAGGATCTTA
* * *** * *
6901866 TCTCTCTGAAGTTATAGTAGAGTAGATTGCATCCGATTGAAGATGGAGATCTTATCTCCTTG-AG
66 TCTCTCTGAAGTTACAGTAGAGTAGATCGCATCCGATTGAAGCCAGAAATCTTATCTCCCTGAAG
* * *
6901930 ATTACAGCGAAAC
131 -TTACAGTGGAGC
* * * ** **
6901943 AGATCGAAGAC-ACT-ATCCTATCTCCCTAAAGTTACAGTGGAGTGGATTAAAGTAATA-GATCT
1 AGATTGAAGCCGA-TAATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAA-AGGATCT
* *
6902005 TATCTCTCTGAAGTTGCAGTAGAGTGGATCG
64 TATCTCTCTGAAGTTACAGTAGAGTAGATCG
6902036 TATTAGGTCT
Statistics
Matches: 338, Mismatches: 36, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
141 71 0.21
142 267 0.79
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (142 bp):
AGATTGAAGCCGATAATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAAAGGATCTTA
TCTCTCTGAAGTTACAGTAGAGTAGATCGCATCCGATTGAAGCCAGAAATCTTATCTCCCTGAAG
TTACAGTGGAGC
Found at i:6901831 original size:98 final size:98
Alignment explanation
Indices: 6901660--6901839 Score: 272
Period size: 98 Copynumber: 1.8 Consensus size: 98
6901650 CAGTGGAGTA
* *
6901660 GATTGAAGCCGATAATCCTATCTCCCTGAAGTTACAGTAGAGCAGATTAAAACAAAGGATCTTAT
1 GATTGAAGCCGATAATCCTATCTCCCTGAAGTTACAGTAGAGCAGATTAAAACAAAGAATCCTAT
*
6901725 CTCTCTGAAGTTACAGTAGAGTAGATCGCATCC
66 CTCCCTGAAGTTACAGTAGAGTAGATCGCATCC
* * ** *
6901758 GATTGAAGCCAGA-AATCTTATCTCCCTGAAGTTACAGTAGAGCAGATTAAAGCCGATAATCCTA
1 GATTGAAGCC-GATAATCCTATCTCCCTGAAGTTACAGTAGAGCAGATTAAAACAAAGAATCCTA
6901822 TCTCCCTGAAGTTACAGT
65 TCTCCCTGAAGTTACAGT
6901840 GGAGCGGATT
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
98 71 0.97
99 2 0.03
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (98 bp):
GATTGAAGCCGATAATCCTATCTCCCTGAAGTTACAGTAGAGCAGATTAAAACAAAGAATCCTAT
CTCCCTGAAGTTACAGTAGAGTAGATCGCATCC
Found at i:6902092 original size:44 final size:44
Alignment explanation
Indices: 6902040--6902161 Score: 140
Period size: 44 Copynumber: 2.8 Consensus size: 44
6902030 GGATCGTATT
* *
6902040 AGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTG-AGAAAAC
1 AGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACCGAAG-AAAC
* * * *
6902084 AGGTCTTATCCCCCTGAAGTTGCAGTGGGGCAGACCGAAGAAGC
1 AGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACCGAAGAAAC
**
6902128 AAATCTTA-CTTCCCTGAGGTTGCAGTGGAGCAGA
1 AGGTCTTATC-TCCCTGAGGTTGCAGTGGAGCAGA
6902162 TTGAAGTCGA
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
43 1 0.02
44 62 0.95
45 2 0.03
ACGTcount: A:0.26, C:0.23, G:0.30, T:0.21
Consensus pattern (44 bp):
AGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACCGAAGAAAC
Found at i:6906006 original size:24 final size:25
Alignment explanation
Indices: 6905964--6906015 Score: 79
Period size: 24 Copynumber: 2.1 Consensus size: 25
6905954 GGCTCTATGT
*
6905964 GAGCTTTCTGATTAATGGCTCTCCG
1 GAGCTTTCTCATTAATGGCTCTCCG
*
6905989 GAGCTTT-TCATTAATGGCTCTTCG
1 GAGCTTTCTCATTAATGGCTCTCCG
6906013 GAG
1 GAG
6906016 TTACCCGTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 18 0.72
25 7 0.28
ACGTcount: A:0.17, C:0.21, G:0.25, T:0.37
Consensus pattern (25 bp):
GAGCTTTCTCATTAATGGCTCTCCG
Found at i:6906046 original size:24 final size:24
Alignment explanation
Indices: 6906019--6906074 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 24
6906009 TTCGGAGTTA
*
6906019 CCCGTTATTGGCT-TGGATGAGCTT
1 CCCGTTATTAGCTCT-GATGAGCTT
*
6906043 CCCGATTA-TAGCTCTTATGAGCTT
1 CCCG-TTATTAGCTCTGATGAGCTT
6906067 CCCGTTAT
1 CCCGTTAT
6906075 ACAACCCGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
23 3 0.11
24 20 0.74
25 4 0.15
ACGTcount: A:0.16, C:0.25, G:0.21, T:0.38
Consensus pattern (24 bp):
CCCGTTATTAGCTCTGATGAGCTT
Found at i:6914446 original size:25 final size:26
Alignment explanation
Indices: 6914398--6914452 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 26
6914388 TGTTTCCTTC
*
6914398 TAAAAAAATAAGTAAGAAAAAGAAA-
1 TAAAAAAATAAATAAGAAAAAGAAAG
* **
6914423 TAAATAAATAAATAAGAATCAGAAAG
1 TAAAAAAATAAATAAGAAAAAGAAAG
6914449 TAAA
1 TAAA
6914453 CGAGATCTAC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
25 21 0.84
26 4 0.16
ACGTcount: A:0.71, C:0.02, G:0.11, T:0.16
Consensus pattern (26 bp):
TAAAAAAATAAATAAGAAAAAGAAAG
Found at i:6921693 original size:33 final size:33
Alignment explanation
Indices: 6921651--6921735 Score: 107
Period size: 33 Copynumber: 2.5 Consensus size: 33
6921641 CAGTCGTGAT
*
6921651 TTGGTGTGTTGGTTTGATTAGCTCTTATGAGCA
1 TTGGTGTGTTGGTTGGATTAGCTCTTATGAGCA
** *
6921684 TTGGTGTGTTGGAGGGATTGGCTCTTATGAGCA
1 TTGGTGTGTTGGTTGGATTAGCTCTTATGAGCA
*
6921717 TCTAGTGTGTTTGGTTGGA
1 T-TGGTGTG-TTGGTTGGA
6921736 CTGACAATGT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
33 30 0.70
34 6 0.14
35 7 0.16
ACGTcount: A:0.14, C:0.08, G:0.35, T:0.42
Consensus pattern (33 bp):
TTGGTGTGTTGGTTGGATTAGCTCTTATGAGCA
Found at i:6936306 original size:31 final size:31
Alignment explanation
Indices: 6936247--6936306 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
6936237 ATTTACTCTT
* * *
6936247 TTAAAAATCATATTTGACTTGCTGTTTGAAA
1 TTAAAAATCAAATTTAACTTGCTCTTTGAAA
6936278 TTAAAAATCAAATTTAACTT-CATCTTTGA
1 TTAAAAATCAAATTTAACTTGC-TCTTTGA
6936307 TCTTCCTTGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 1 0.04
31 24 0.96
ACGTcount: A:0.38, C:0.12, G:0.08, T:0.42
Consensus pattern (31 bp):
TTAAAAATCAAATTTAACTTGCTCTTTGAAA
Found at i:6936396 original size:12 final size:12
Alignment explanation
Indices: 6936379--6936403 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6936369 GGTGTTCATT
6936379 CGGTTAACCGAC
1 CGGTTAACCGAC
6936391 CGGTTAACCGAC
1 CGGTTAACCGAC
6936403 C
1 C
6936404 CGAAATAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:6936577 original size:9 final size:9
Alignment explanation
Indices: 6936565--6936616 Score: 68
Period size: 9 Copynumber: 5.8 Consensus size: 9
6936555 TTTTGGTTAA
6936565 AAATTAACC
1 AAATTAACC
6936574 AAATTAACC
1 AAATTAACC
*
6936583 GAATTAACC
1 AAATTAACC
* *
6936592 GAATTGACC
1 AAATTAACC
*
6936601 GAATTAACC
1 AAATTAACC
6936610 AAATTAA
1 AAATTAA
6936617 TCACTACATA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 39 1.00
ACGTcount: A:0.50, C:0.19, G:0.08, T:0.23
Consensus pattern (9 bp):
AAATTAACC
Found at i:6936589 original size:18 final size:18
Alignment explanation
Indices: 6936566--6936616 Score: 84
Period size: 18 Copynumber: 2.8 Consensus size: 18
6936556 TTTGGTTAAA
6936566 AATTAACCAAATTAACCG
1 AATTAACCAAATTAACCG
* *
6936584 AATTAACCGAATTGACCG
1 AATTAACCAAATTAACCG
6936602 AATTAACCAAATTAA
1 AATTAACCAAATTAA
6936617 TCACTACATA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.49, C:0.20, G:0.08, T:0.24
Consensus pattern (18 bp):
AATTAACCAAATTAACCG
Found at i:6936760 original size:18 final size:18
Alignment explanation
Indices: 6936720--6936763 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
6936710 TAATTTTATG
**
6936720 ATTGGGTTGGGTTGGGTA
1 ATTGGGTTGGGTTGAATA
6936738 ATTGGGTTGGGTTGAATA
1 ATTGGGTTGGGTTGAATA
*
6936756 CTTGGGTT
1 ATTGGGTT
6936764 TAGATTGGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.14, C:0.02, G:0.43, T:0.41
Consensus pattern (18 bp):
ATTGGGTTGGGTTGAATA
Found at i:6948884 original size:83 final size:83
Alignment explanation
Indices: 6948751--6948916 Score: 262
Period size: 83 Copynumber: 2.0 Consensus size: 83
6948741 ATTATTATAT
6948751 AAAATCAAACAAAAACTGAATAAAAATTATTATAAAATAAGAAGCACAAGGCAAATAAACAAAAT
1 AAAATCAAACAAAAACTGAATAAAAATTATTATAAAATAAGAAGCACAAGGCAAATAAACAAAAT
6948816 ATAAAAATTGGTCAACAA
66 ATAAAAATTGGTCAACAA
** * *
6948834 AAAATCAAACAAAAACTGAATAAAAAATTATTATAAGGTAA-AAGCTCAAGGTAAATAAACAAAA
1 AAAATCAAACAAAAACTGAAT-AAAAATTATTATAAAATAAGAAGCACAAGGCAAATAAACAAAA
* *
6948898 TATGAAAATTGGTGAACAA
65 TATAAAAATTGGTCAACAA
6948917 GACTTGGAAA
Statistics
Matches: 76, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
83 59 0.78
84 17 0.22
ACGTcount: A:0.61, C:0.10, G:0.10, T:0.19
Consensus pattern (83 bp):
AAAATCAAACAAAAACTGAATAAAAATTATTATAAAATAAGAAGCACAAGGCAAATAAACAAAAT
ATAAAAATTGGTCAACAA
Found at i:6950235 original size:32 final size:31
Alignment explanation
Indices: 6950175--6950238 Score: 112
Period size: 31 Copynumber: 2.1 Consensus size: 31
6950165 AGGCCTATTT
6950175 TTATTTTAAAAAATTTTAAAAATTAAAAAAA
1 TTATTTTAAAAAATTTTAAAAATTAAAAAAA
6950206 TTATTTTAAAAATATTTT-AAAATTAAAAAAA
1 TTATTTTAAAAA-ATTTTAAAAATTAAAAAAA
6950237 TT
1 TT
6950239 TTAAAAAAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
31 27 0.84
32 5 0.16
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (31 bp):
TTATTTTAAAAAATTTTAAAAATTAAAAAAA
Found at i:6950236 original size:40 final size:39
Alignment explanation
Indices: 6950192--6950277 Score: 118
Period size: 40 Copynumber: 2.2 Consensus size: 39
6950182 AAAAAATTTT
* *
6950192 AAAAATTAAAAAAATTATTTTAAAAATATTTTAAAATTAA
1 AAAAATTAAAAAAAGTA-TGTAAAAATATTTTAAAATTAA
* *
6950232 AAAAATTTTAAAAAAGTATGTAAAAATATTTTACAATTAA
1 AAAAA-TTAAAAAAAGTATGTAAAAATATTTTAAAATTAA
6950272 AAAAAT
1 AAAAAT
6950278 AAATATATTT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
39 1 0.02
40 30 0.73
41 10 0.24
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.35
Consensus pattern (39 bp):
AAAAATTAAAAAAAGTATGTAAAAATATTTTAAAATTAA
Found at i:6951880 original size:21 final size:20
Alignment explanation
Indices: 6951856--6951915 Score: 68
Period size: 21 Copynumber: 3.0 Consensus size: 20
6951846 ACCAAAAATT
6951856 TATTTTAAAAATTAAAAAAA
1 TATTTTAAAAATTAAAAAAA
* **
6951876 GTATTTAAAAATATTTTAAAAA
1 -TATTTTAAAA-ATTAAAAAAA
6951898 TATTTT-AAAATTAAAAAA
1 TATTTTAAAAATTAAAAAA
6951916 TAATAAAAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
19 7 0.22
20 3 0.09
21 14 0.44
22 8 0.25
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (20 bp):
TATTTTAAAAATTAAAAAAA
Found at i:6951893 original size:11 final size:11
Alignment explanation
Indices: 6951879--6951948 Score: 67
Period size: 11 Copynumber: 6.6 Consensus size: 11
6951869 AAAAAAAGTA
6951879 TTTAAAAATAT
1 TTTAAAAATAT
6951890 TTTAAAAATAT
1 TTTAAAAATAT
6951901 TTT--AAA-A-
1 TTTAAAAATAT
* *
6951908 TTAAAAAATAA
1 TTTAAAAATAT
**
6951919 TAAAAAAAGTAT
1 TTTAAAAA-TAT
6951931 TTTAAAAATAT
1 TTTAAAAATAT
6951942 TTTAAAA
1 TTTAAAA
6951949 TTAAAAAAAT
Statistics
Matches: 49, Mismatches: 5, Indels: 10
0.77 0.08 0.16
Matches are distributed among these distances:
7 2 0.04
8 1 0.02
9 6 0.12
10 1 0.02
11 31 0.63
12 8 0.16
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.39
Consensus pattern (11 bp):
TTTAAAAATAT
Found at i:6951954 original size:17 final size:17
Alignment explanation
Indices: 6951932--6951976 Score: 56
Period size: 16 Copynumber: 2.7 Consensus size: 17
6951922 AAAAAGTATT
6951932 TTAAAAATATTTTAAAA
1 TTAAAAATATTTTAAAA
*
6951949 TTAAAAA-AATTTAAAA
1 TTAAAAATATTTTAAAA
* *
6951965 ATAAATATATTT
1 TTAAAAATATTT
6951977 ATTATATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
16 13 0.57
17 10 0.43
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
TTAAAAATATTTTAAAA
Found at i:6951964 original size:41 final size:41
Alignment explanation
Indices: 6951856--6951965 Score: 154
Period size: 41 Copynumber: 2.7 Consensus size: 41
6951846 ACCAAAAATT
*
6951856 TATTTTAAAAATTAAAAAAAGTATT-TAAAAATATTTTAAAAA
1 TATTTT-AAAATTAAAAAAA-TATTAAAAAAATATTTTAAAAA
*
6951898 TATTTTAAAATT-AAAAAATAATAAAAAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAAATATTAAAAAAA-TATTTTAAAAA
6951939 TATTTTAAAATTAAAAAAAT-TTAAAAA
1 TATTTTAAAATTAAAAAAATATTAAAAA
6951966 TAAATATATT
Statistics
Matches: 62, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
39 3 0.05
40 11 0.18
41 35 0.56
42 13 0.21
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (41 bp):
TATTTTAAAATTAAAAAAATATTAAAAAAATATTTTAAAAA
Found at i:6954317 original size:10 final size:10
Alignment explanation
Indices: 6954302--6954404 Score: 54
Period size: 10 Copynumber: 10.4 Consensus size: 10
6954292 CAGGGGTGGC
6954302 TTTTAATAAT
1 TTTTAATAAT
*
6954312 TTTTAA-ACTT
1 TTTTAATA-AT
* *
6954322 TTTTATTGAT
1 TTTTAATAAT
6954332 TTTTAATAA-
1 TTTTAATAAT
*
6954341 TTTTAATAAAA
1 TTTTAAT-AAT
6954352 TTTT-ATAACT
1 TTTTAATAA-T
* *
6954362 TATT-ATAAG
1 TTTTAATAAT
*
6954371 TATTAATAAT
1 TTTTAATAAT
* *
6954381 TTCTAATAAA
1 TTTTAATAAT
6954391 TTTT-ATATAT
1 TTTTAATA-AT
6954401 TTTT
1 TTTT
6954405 TTGTAATTTT
Statistics
Matches: 71, Mismatches: 15, Indels: 14
0.71 0.15 0.14
Matches are distributed among these distances:
9 17 0.24
10 50 0.70
11 4 0.06
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.57
Consensus pattern (10 bp):
TTTTAATAAT
Found at i:6954355 original size:20 final size:19
Alignment explanation
Indices: 6954332--6954395 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 19
6954322 TTTTATTGAT
6954332 TTTTAATAATTTTAATAAAA
1 TTTTAATAATTTTAAT-AAA
*
6954352 TTTT-ATAACTTATT-ATAAG
1 TTTTAATAA-TT-TTAATAAA
*
6954371 TATTAATAATTTCTAATAAA
1 TTTTAATAATTT-TAATAAA
6954391 TTTTA
1 TTTTA
6954396 TATATTTTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
18 1 0.03
19 12 0.34
20 20 0.57
21 2 0.06
ACGTcount: A:0.44, C:0.03, G:0.02, T:0.52
Consensus pattern (19 bp):
TTTTAATAATTTTAATAAA
Found at i:6954546 original size:16 final size:16
Alignment explanation
Indices: 6954521--6954558 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
6954511 CCTAGAGCTG
*
6954521 ATTTTTAAAATAATT-
1 ATTTTTAAAAAAATTA
6954536 ATTTTTAAAAAAAATTA
1 ATTTTT-AAAAAAATTA
6954553 ATTTTT
1 ATTTTT
6954559 TTAGGATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 6 0.30
16 8 0.40
17 6 0.30
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
ATTTTTAAAAAAATTA
Found at i:6958149 original size:40 final size:40
Alignment explanation
Indices: 6958105--6958242 Score: 140
Period size: 40 Copynumber: 3.5 Consensus size: 40
6958095 ACACACCAGT
* * *
6958105 TTGACACCCAGTGCCTCATCGGATAATTCTAAGTAATAAA
1 TTGACACCCAGTGCCTCATCGGATAATACCAAGTAGTAAA
* * * *
6958145 TTGACACCCAATGTCTCATCGGCTAA-ACCAA--AGTGAA
1 TTGACACCCAGTGCCTCATCGGATAATACCAAGTAGTAAA
* *
6958182 TTGGCACCCAGTGCCTCATCGAATTAAT-CCGAAGTAGTAAA
1 TTGACACCCAGTGCCTCATCGGA-TAATACC-AAGTAGTAAA
*
6958223 TTGACACCCAGTGTCTCATC
1 TTGACACCCAGTGCCTCATC
6958243 AACTCGAAGT
Statistics
Matches: 78, Mismatches: 15, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
37 22 0.28
38 5 0.06
39 5 0.06
40 23 0.29
41 23 0.29
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (40 bp):
TTGACACCCAGTGCCTCATCGGATAATACCAAGTAGTAAA
Found at i:6959143 original size:4 final size:4
Alignment explanation
Indices: 6959134--6959165 Score: 55
Period size: 4 Copynumber: 7.8 Consensus size: 4
6959124 CTTATTCTCC
6959134 TTCT TTCT TTCT TTCTT TTCT TTCT TTCT TTC
1 TTCT TTCT TTCT TTC-T TTCT TTCT TTCT TTC
6959166 CCTTTGTGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 23 0.85
5 4 0.15
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (4 bp):
TTCT
Found at i:6959155 original size:13 final size:13
Alignment explanation
Indices: 6959137--6959164 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
6959127 ATTCTCCTTC
6959137 TTTCTTTCTTTCT
1 TTTCTTTCTTTCT
6959150 TTTCTTTCTTTCT
1 TTTCTTTCTTTCT
6959163 TT
1 TT
6959165 CCCTTTGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTCTTTCTTTCT
Found at i:6959156 original size:17 final size:17
Alignment explanation
Indices: 6959134--6959201 Score: 66
Period size: 17 Copynumber: 3.8 Consensus size: 17
6959124 CTTATTCTCC
6959134 TTCTTTCTTTCTTTCTT
1 TTCTTTCTTTCTTTCTT
6959151 TTCTTTCTTTCTTTCCCTT
1 TTCTTTCTTTCTTT--CTT
* *
6959170 TGTGTTTCGTTT-TTGCTT
1 T-TCTTTC-TTTCTTTCTT
*
6959188 TTGTTTCTTTCTTT
1 TTCTTTCTTTCTTT
6959202 ATTATAATAT
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
16 3 0.07
17 22 0.51
18 4 0.09
19 4 0.09
20 7 0.16
21 3 0.07
ACGTcount: A:0.00, C:0.21, G:0.07, T:0.72
Consensus pattern (17 bp):
TTCTTTCTTTCTTTCTT
Found at i:6959216 original size:7 final size:7
Alignment explanation
Indices: 6959204--6959278 Score: 66
Period size: 7 Copynumber: 10.6 Consensus size: 7
6959194 CTTTCTTTAT
6959204 TATAATA
1 TATAATA
6959211 TATAATA
1 TATAATA
6959218 TATAATA
1 TATAATA
6959225 TATAATA
1 TATAATA
6959232 TAT-ATA
1 TATAATA
*
6959238 CT-TAACA
1 -TATAATA
*
6959245 TTTAAGT-
1 TATAA-TA
*
6959252 TTTAATA
1 TATAATA
6959259 TTATAATA
1 -TATAATA
6959267 TTATAATA
1 -TATAATA
6959275 TATA
1 TATA
6959279 TTTTAACTTT
Statistics
Matches: 59, Mismatches: 3, Indels: 12
0.80 0.04 0.16
Matches are distributed among these distances:
6 6 0.10
7 39 0.66
8 14 0.24
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (7 bp):
TATAATA
Found at i:6959290 original size:41 final size:41
Alignment explanation
Indices: 6959213--6959307 Score: 117
Period size: 42 Copynumber: 2.3 Consensus size: 41
6959203 TTATAATATA
6959213 TAATATATAATATATAATATATATACTTAACATTTAAGTTT
1 TAATATATAATATATAATATATATACTTAACATTTAAGTTT
* *
6959254 TAATATTATAATATTATAATATATAT-TTTAAC-TTTAAAATTT
1 TAATA-TATAATA-TATAATATATATACTTAACATTT-AAGTTT
6959296 T-ATA-ATAATATA
1 TAATATATAATATA
6959308 CTTATGCCGC
Statistics
Matches: 49, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
38 2 0.04
39 6 0.12
41 11 0.22
42 18 0.37
43 12 0.24
ACGTcount: A:0.47, C:0.03, G:0.01, T:0.48
Consensus pattern (41 bp):
TAATATATAATATATAATATATATACTTAACATTTAAGTTT
Found at i:6961289 original size:13 final size:13
Alignment explanation
Indices: 6961237--6961302 Score: 62
Period size: 13 Copynumber: 5.1 Consensus size: 13
6961227 AATTCTTCTT
6961237 TACTTTTGAAAAG
1 TACTTTTGAAAAG
* *
6961250 TATTTTTAAAAAG
1 TACTTTTGAAAAG
* *
6961263 T-GTTGTGGAAAAG
1 TACTT-TTGAAAAG
*
6961276 TACTTTTGAGAAG
1 TACTTTTGAAAAG
*
6961289 TGCTTTTGAAAAG
1 TACTTTTGAAAAG
6961302 T
1 T
6961303 TTGGTTTAAA
Statistics
Matches: 41, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
12 2 0.05
13 37 0.90
14 2 0.05
ACGTcount: A:0.35, C:0.05, G:0.21, T:0.39
Consensus pattern (13 bp):
TACTTTTGAAAAG
Found at i:6961299 original size:26 final size:26
Alignment explanation
Indices: 6961239--6961302 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 26
6961229 TTCTTCTTTA
*
6961239 CTTTTGAAAAGTATTTTTAAAAAGTG
1 CTTTTGAAAAGTACTTTTAAAAAGTG
* * *
6961265 -TTGTGGAAAAGTACTTTTGAGAAGTG
1 CTT-TTGAAAAGTACTTTTAAAAAGTG
6961291 CTTTTGAAAAGT
1 CTTTTGAAAAGT
6961303 TTGGTTTAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
25 2 0.06
26 27 0.87
27 2 0.06
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.39
Consensus pattern (26 bp):
CTTTTGAAAAGTACTTTTAAAAAGTG
Found at i:6968850 original size:3 final size:3
Alignment explanation
Indices: 6968842--6968866 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
6968832 ATATACCAAA
6968842 AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG A
6968867 TAGATTCACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:6976958 original size:17 final size:17
Alignment explanation
Indices: 6976861--6976947 Score: 56
Period size: 17 Copynumber: 5.1 Consensus size: 17
6976851 TAGATAATAG
*
6976861 ATTAAATTTAATATTAA
1 ATTAAATTAAATATTAA
* *
6976878 GATAATCAATTTAATATTAA
1 -AT--TAAATTAAATATTAA
* *
6976898 ATT-AATAAAATACT--
1 ATTAAATTAAATATTAA
*
6976912 ATTAAGA-TAAGTATTAA
1 ATTAA-ATTAAATATTAA
6976929 ATTAAATTAAATATTAA
1 ATTAAATTAAATATTAA
6976946 AT
1 AT
6976948 ATATTAAAAT
Statistics
Matches: 54, Mismatches: 8, Indels: 15
0.70 0.10 0.19
Matches are distributed among these distances:
14 3 0.06
15 6 0.11
16 10 0.19
17 17 0.31
18 2 0.04
19 2 0.04
20 14 0.26
ACGTcount: A:0.54, C:0.02, G:0.03, T:0.40
Consensus pattern (17 bp):
ATTAAATTAAATATTAA
Found at i:6976961 original size:68 final size:69
Alignment explanation
Indices: 6976819--6976964 Score: 172
Period size: 68 Copynumber: 2.1 Consensus size: 69
6976809 TTTAATTACT
* * *
6976819 ATAATATTAAATTAATATAACACTTATCAAGATAGATAATAGATTAAATTTAATATTAAGATAAT
1 ATAATATTAAATTAATAAAACACTTATCAAGATAGATAATAAATTAAATTAAATATTAAGATAAT
*
6976884 CAAT
66 CAAA
* * * *
6976888 TTAATATTAAATTAATAAAATAC-TATTAAGATA-AGTATTAAATTAAATTAAATATTAA-ATAT
1 ATAATATTAAATTAATAAAACACTTATCAAGATAGA-TAATAAATTAAATTAAATATTAAGATA-
*
6976950 ATTAAA
64 ATCAAA
6976956 ATAATATTA
1 ATAATATTA
6976965 TTTTTAAAAT
Statistics
Matches: 65, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
67 4 0.06
68 41 0.63
69 20 0.31
ACGTcount: A:0.54, C:0.03, G:0.04, T:0.38
Consensus pattern (69 bp):
ATAATATTAAATTAATAAAACACTTATCAAGATAGATAATAAATTAAATTAAATATTAAGATAAT
CAAA
Found at i:6979943 original size:20 final size:21
Alignment explanation
Indices: 6979906--6979944 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
6979896 GTCTGAACGA
6979906 AACCTCCATTACCCAAAATTG
1 AACCTCCATTACCCAAAATTG
*
6979927 AACCTCCATT-TCCAAAAT
1 AACCTCCATTACCCAAAAT
6979945 AGTTGAACCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.38, C:0.33, G:0.03, T:0.26
Consensus pattern (21 bp):
AACCTCCATTACCCAAAATTG
Found at i:6981868 original size:102 final size:103
Alignment explanation
Indices: 6981691--6981885 Score: 284
Period size: 102 Copynumber: 1.9 Consensus size: 103
6981681 TTAAATAAAA
* ** * * * * *
6981691 AATAAATTAGGAGTGTGTTGGGCTGGGTAACCAATGGTGGGGTGCTTGGGTTGTCATTCCACTTT
1 AATAAATTAGGAATGTGTTGGGCTAAGTAACCAAGGGTAGGGTGCTTGGATAGTCATTCCACTTC
6981756 GCATCAAAAAGGCCAATACATTCTTAAACAACAATAAT
66 GCATCAAAAAGGCCAATACATTCTTAAACAACAATAAT
*
6981794 AATAAATTAGGAATGTGTTGGGCTAAGTAA-CTAGGGTAGGGTGCTTGGATAGTCATTCCACTTC
1 AATAAATTAGGAATGTGTTGGGCTAAGTAACCAAGGGTAGGGTGCTTGGATAGTCATTCCACTTC
**
6981858 GGGTCAAAAAGGCCAATACATTCTTAAA
66 GCATCAAAAAGGCCAATACATTCTTAAA
6981886 TAAAATATAT
Statistics
Matches: 81, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
102 54 0.67
103 27 0.33
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.29
Consensus pattern (103 bp):
AATAAATTAGGAATGTGTTGGGCTAAGTAACCAAGGGTAGGGTGCTTGGATAGTCATTCCACTTC
GCATCAAAAAGGCCAATACATTCTTAAACAACAATAAT
Found at i:6983007 original size:27 final size:27
Alignment explanation
Indices: 6982956--6983037 Score: 114
Period size: 27 Copynumber: 3.1 Consensus size: 27
6982946 ACAATCATAC
* * *
6982956 ATAACATA-AAGCAT-ACAAACGTTTT
1 ATAACATAGGAGCATAACAATCATTTT
*
6982981 ATAACATAGGGGCATAACAATCATTTT
1 ATAACATAGGAGCATAACAATCATTTT
6983008 ATAACATAGGAGCATAACAATCATTTT
1 ATAACATAGGAGCATAACAATCATTTT
6983035 ATA
1 ATA
6983038 TCAGTTTAGG
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
25 8 0.16
26 4 0.08
27 38 0.76
ACGTcount: A:0.45, C:0.15, G:0.11, T:0.29
Consensus pattern (27 bp):
ATAACATAGGAGCATAACAATCATTTT
Found at i:6983180 original size:18 final size:18
Alignment explanation
Indices: 6983154--6983194 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
6983144 TAAAATGCGG
6983154 GCCCATGTGGGCCCACAT-
1 GCCCATGT-GGCCCACATA
*
6983172 GCCCGTGTGGCCCACATA
1 GCCCATGTGGCCCACATA
6983190 GCCCA
1 GCCCA
6983195 AAATTGGTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.17, C:0.41, G:0.27, T:0.15
Consensus pattern (18 bp):
GCCCATGTGGCCCACATA
Found at i:6987878 original size:24 final size:24
Alignment explanation
Indices: 6987824--6987878 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 24
6987814 AAGTTGAATT
*
6987824 CTCCAAAAAGAAGTTCCATTAAGT
1 CTCCAAAAAGAAGTTCCATTAAGC
6987848 CTGCCAAAAAGATAGTTCC-TTGAA-C
1 CT-CCAAAAAGA-AGTTCCATT-AAGC
6987873 CTCCAA
1 CTCCAA
6987879 CGGTACATCT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
24 6 0.22
25 13 0.48
26 8 0.30
ACGTcount: A:0.38, C:0.25, G:0.13, T:0.24
Consensus pattern (24 bp):
CTCCAAAAAGAAGTTCCATTAAGC
Found at i:6990197 original size:34 final size:32
Alignment explanation
Indices: 6990144--6990218 Score: 132
Period size: 34 Copynumber: 2.3 Consensus size: 32
6990134 CAGTAATAGT
6990144 TCAGTTCAGTTGGGCCTTAGCCCATTACAGTA
1 TCAGTTCAGTTGGGCCTTAGCCCATTACAGTA
6990176 TCAGTATCAGTGTGGGCCTTAGCCCATTACAGTA
1 TCAGT-TCAGT-TGGGCCTTAGCCCATTACAGTA
6990210 TCAGTTCAG
1 TCAGTTCAG
6990219 ACATGCAATA
Statistics
Matches: 41, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
32 5 0.12
33 9 0.22
34 27 0.66
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.31
Consensus pattern (32 bp):
TCAGTTCAGTTGGGCCTTAGCCCATTACAGTA
Found at i:6990278 original size:22 final size:22
Alignment explanation
Indices: 6990236--6990280 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
6990226 ATAAGAAATC
*
6990236 CTACCCAACCAGCCTCTACACT
1 CTACCCAACCAGCCTCAACACT
*
6990258 CTACTCCATCCAGCC-CAACACT
1 CTAC-CCAACCAGCCTCAACACT
6990280 C
1 C
6990281 CATGTGGGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.27, C:0.51, G:0.04, T:0.18
Consensus pattern (22 bp):
CTACCCAACCAGCCTCAACACT
Found at i:6990514 original size:27 final size:27
Alignment explanation
Indices: 6990482--6990549 Score: 127
Period size: 27 Copynumber: 2.5 Consensus size: 27
6990472 ACAAAAATAT
*
6990482 ACAGTCATTTTATAACATAGGGGCATA
1 ACAGTCATTTTATAACATAGGGGCACA
6990509 ACAGTCATTTTATAACATAGGGGCACA
1 ACAGTCATTTTATAACATAGGGGCACA
6990536 ACAGTCATTTTATA
1 ACAGTCATTTTATA
6990550 TCAGTTTGGG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (27 bp):
ACAGTCATTTTATAACATAGGGGCACA
Found at i:6992845 original size:27 final size:27
Alignment explanation
Indices: 6992811--6992876 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
6992801 TAGAGTATGT
6992811 AGTCATTTTATAACATAAGGGCATAAC
1 AGTCATTTTATAACATAAGGGCATAAC
** * **
6992838 AGTCATTTTACCACGTGGGGGCATAAC
1 AGTCATTTTATAACATAAGGGCATAAC
*
6992865 AATCATTTTATA
1 AGTCATTTTATA
6992877 TCAGTTTGGG
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.32
Consensus pattern (27 bp):
AGTCATTTTATAACATAAGGGCATAAC
Found at i:6998730 original size:14 final size:14
Alignment explanation
Indices: 6998709--6998762 Score: 56
Period size: 14 Copynumber: 3.9 Consensus size: 14
6998699 TATTTTTTGG
*
6998709 TTTATTTTTT-TGT
1 TTTATTTTTTCTTT
* *
6998722 TTTGTTTTTTATTT
1 TTTATTTTTTCTTT
* *
6998736 TTTCTTTTTTCTTC
1 TTTATTTTTTCTTT
6998750 TTTATTTTTTCTT
1 TTTATTTTTTCTT
6998763 GATTTAAGAA
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
13 9 0.26
14 25 0.74
ACGTcount: A:0.06, C:0.07, G:0.04, T:0.83
Consensus pattern (14 bp):
TTTATTTTTTCTTT
Found at i:6998745 original size:21 final size:21
Alignment explanation
Indices: 6998709--6998762 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
6998699 TATTTTTTGG
* * *
6998709 TTTATTTTTT-TGTTTTGTTT
1 TTTATTTTTTCTTTTTTCTTC
6998729 TTTATTTTTTCTTTTTTCTTC
1 TTTATTTTTTCTTTTTTCTTC
6998750 TTTATTTTTTCTT
1 TTTATTTTTTCTT
6998763 GATTTAAGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 10 0.33
21 20 0.67
ACGTcount: A:0.06, C:0.07, G:0.04, T:0.83
Consensus pattern (21 bp):
TTTATTTTTTCTTTTTTCTTC
Found at i:7000749 original size:33 final size:33
Alignment explanation
Indices: 7000712--7000780 Score: 138
Period size: 33 Copynumber: 2.1 Consensus size: 33
7000702 AAAAATTTAA
7000712 ATTTTGAGTTAATCAAATTGAGTTATTCGAATT
1 ATTTTGAGTTAATCAAATTGAGTTATTCGAATT
7000745 ATTTTGAGTTAATCAAATTGAGTTATTCGAATT
1 ATTTTGAGTTAATCAAATTGAGTTATTCGAATT
7000778 ATT
1 ATT
7000781 AAAGTCAACT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.33, C:0.06, G:0.14, T:0.46
Consensus pattern (33 bp):
ATTTTGAGTTAATCAAATTGAGTTATTCGAATT
Found at i:7000753 original size:19 final size:19
Alignment explanation
Indices: 7000729--7000780 Score: 60
Period size: 14 Copynumber: 3.0 Consensus size: 19
7000719 GTTAATCAAA
7000729 TTGAGTTATTCGAATTATT
1 TTGAGTTATTCGAATTATT
*
7000748 TTGAGTTAATC-AA--A--
1 TTGAGTTATTCGAATTATT
7000762 TTGAGTTATTCGAATTATT
1 TTGAGTTATTCGAATTATT
7000781 AAAGTCAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 10
0.68 0.05 0.26
Matches are distributed among these distances:
14 10 0.38
15 2 0.08
16 1 0.04
17 1 0.04
18 2 0.08
19 10 0.38
ACGTcount: A:0.31, C:0.06, G:0.15, T:0.48
Consensus pattern (19 bp):
TTGAGTTATTCGAATTATT
Found at i:7000777 original size:14 final size:14
Alignment explanation
Indices: 7000715--7000769 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
7000705 AATTTAAATT
7000715 TTGAGTTAATCAAA
1 TTGAGTTAATCAAA
*
7000729 TTGAGTTATTCGAATTA
1 TTGAGTTAATC-AA--A
7000746 TTTTGAGTTAATCAAA
1 --TTGAGTTAATCAAA
7000762 TTGAGTTA
1 TTGAGTTA
7000770 TTCGAATTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 18 0.53
15 2 0.06
16 1 0.03
17 1 0.03
18 2 0.06
19 10 0.29
ACGTcount: A:0.35, C:0.05, G:0.16, T:0.44
Consensus pattern (14 bp):
TTGAGTTAATCAAA
Found at i:7000999 original size:19 final size:20
Alignment explanation
Indices: 7000975--7001032 Score: 57
Period size: 19 Copynumber: 2.8 Consensus size: 20
7000965 TCAAATTTTG
7000975 AAAATAATTTTTAAAATT-C
1 AAAATAATTTTTAAAATTCC
*
7000994 AAAAT-ATTTATAGAAATTCC
1 AAAATAATTTTTA-AAATTCC
7001014 AAAATTTATATTTTTAAAA
1 AAAA--TA-ATTTTTAAAA
7001033 AAATTATAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
18 6 0.19
19 10 0.32
20 5 0.16
22 1 0.03
23 3 0.10
24 6 0.19
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.41
Consensus pattern (20 bp):
AAAATAATTTTTAAAATTCC
Found at i:7010819 original size:25 final size:23
Alignment explanation
Indices: 7010743--7010844 Score: 109
Period size: 22 Copynumber: 4.3 Consensus size: 23
7010733 CACTAATGAG
*
7010743 CAGAGAGCACTAAAGTGCTAT-A
1 CAGAGAGCACTAACGTGCTATAA
* *
7010765 CAGAGAGCACAAATGTGCTA-AA
1 CAGAGAGCACTAACGTGCTATAA
*
7010787 CGGAGAGCACTAACGTGCTAGTAA
1 CAGAGAGCACTAACGTGCTA-TAA
*
7010811 TCAGAGAGCACCAACGTGCTAATAA
1 -CAGAGAGCACTAACGTGCT-ATAA
7010836 TCAGAGAGC
1 -CAGAGAGC
7010845 GCGCTAAAGT
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
22 36 0.53
24 2 0.03
25 29 0.43
26 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.25, T:0.16
Consensus pattern (23 bp):
CAGAGAGCACTAACGTGCTATAA
Found at i:7010832 original size:47 final size:44
Alignment explanation
Indices: 7010745--7010832 Score: 122
Period size: 47 Copynumber: 1.9 Consensus size: 44
7010735 CTAATGAGCA
*
7010745 GAGAGCACTAAAGTGCTATACAGAGAGCACAAATGTGCTAAACG
1 GAGAGCACTAAAGTGCTATACAGAGAGCACAAACGTGCTAAACG
* *
7010789 GAGAGCACTAACGTGCTAGTAATCAGAGAGCACCAACGTGCTAA
1 GAGAGCACTAAAGTGCTA-T-A-CAGAGAGCACAAACGTGCTAA
7010833 TAATCAGAGA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
44 17 0.45
45 1 0.03
46 1 0.03
47 19 0.50
ACGTcount: A:0.39, C:0.20, G:0.25, T:0.16
Consensus pattern (44 bp):
GAGAGCACTAAAGTGCTATACAGAGAGCACAAACGTGCTAAACG
Found at i:7011791 original size:19 final size:19
Alignment explanation
Indices: 7011767--7011805 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
7011757 CTTTTTGCTA
7011767 TTCTAT-TTCTATTCTCTTT
1 TTCTATCTTCTATT-TCTTT
*
7011786 TTCTATCTTTTATTTCTTT
1 TTCTATCTTCTATTTCTTT
7011805 T
1 T
7011806 ATTTAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.10, C:0.18, G:0.00, T:0.72
Consensus pattern (19 bp):
TTCTATCTTCTATTTCTTT
Found at i:7013853 original size:27 final size:25
Alignment explanation
Indices: 7013783--7013870 Score: 95
Period size: 25 Copynumber: 3.4 Consensus size: 25
7013773 TAGGTTAATT
* * *
7013783 TTAAAATAAGTAATATGTAAAATAAC
1 TTAAAATAA-TAATATATAAAGTAAG
*
7013809 TTAAAATAAAATGATATATAAAGTAAG
1 TTAAAAT--AATAATATATAAAGTAAG
* *
7013836 TTAAAATAATAATTTATAAAGCAAG
1 TTAAAATAATAATATATAAAGTAAG
7013861 TTAAAATAAT
1 TTAAAATAAT
7013871 CATAAACGAA
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
25 25 0.47
26 7 0.13
27 19 0.36
28 2 0.04
ACGTcount: A:0.58, C:0.02, G:0.08, T:0.32
Consensus pattern (25 bp):
TTAAAATAATAATATATAAAGTAAG
Found at i:7013954 original size:16 final size:16
Alignment explanation
Indices: 7013914--7013957 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
7013904 GCATACGAGA
7013914 AATTTT-AAATAAAAT
1 AATTTTAAAATAAAAT
* **
7013929 AAATAAAAAATAAAAT
1 AATTTTAAAATAAAAT
7013945 AATTTTAAAATAA
1 AATTTTAAAATAA
7013958 CATATAAAAT
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
15 3 0.14
16 19 0.86
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
AATTTTAAAATAAAAT
Found at i:7015760 original size:44 final size:45
Alignment explanation
Indices: 7015706--7016296 Score: 299
Period size: 44 Copynumber: 13.3 Consensus size: 45
7015696 CTACTACAAC
* *** * *
7015706 CTCAGAGAGATAAGATCTA-TTTTTTTAATCCGCTCCACTGTAAT
1 CTCAGGGAGATAAGATCTACTAGCTTCAATCTGCTCCACTGTAAT
* * *
7015750 CTCAGGGAGATAGGAT-TACTAGCTTCAATTTGCTCCGCTGTAAT
1 CTCAGGGAGATAAGATCTACTAGCTTCAATCTGCTCCACTGTAAT
* * ** **
7015794 CTCAGGGAGATAAGATCTGA-AATTCTTCGGTCTATTCCACTGTAAT
1 CTCAGGGAGATAAGATCT-ACTA-GCTTCAATCTGCTCCACTGTAAT
* * *
7015840 CTCAGGGAGAT-AGAAT-TACTAGCTTTAATATGCTCCGCTGTAAT
1 CTCAGGGAGATAAG-ATCTACTAGCTTCAATCTGCTCCACTGTAAT
** * ** **
7015884 CTCAGGGAGATAAGATCTAAAATTCTTCGGTCTATTCCACTGTAAT
1 CTCAGGGAGATAAGATCTACTA-GCTTCAATCTGCTCCACTGTAAT
* * * * *
7015930 CTCAGGGAGATAAGA-C--CT-GATGCGATCTACTCTACTGTAA-
1 CTCAGGGAGATAAGATCTACTAGCTTCAATCTGCTCCACTGTAAT
* * * * * *
7015970 CTTCAGAGAGATAAAATCCTTTA-TTGTTTTAATCCGCTCCACTGTAAT
1 C-TCAGGGAGATAAGAT-C--TACTAGCTTCAATCTGCTCCACTGTAAT
*
7016018 CTCAGGGAGAT-AGAAT-TACTAGCTTCAATCTGCTCCGCTGTAAT
1 CTCAGGGAGATAAG-ATCTACTAGCTTCAATCTGCTCCACTGTAAT
* * ** * ** **
7016062 CTCAGGAAGACAAGATCTAAAATTCTTCGGTCTATTCCACTGTAAT
1 CTCAGGGAGATAAGATCTACTA-GCTTCAATCTGCTCCACTGTAAT
* * *
7016108 CTCAAGGAGATAGGAT-TACTAGCTTCAATCTGCTCCGCTGTAAT
1 CTCAGGGAGATAAGATCTACTAGCTTCAATCTGCTCCACTGTAAT
* * * ** * **
7016152 CTCAGGTAGATAAGATCTGA-AATTCTTCGGTTTATTCCACTGTAAT
1 CTCAGGGAGATAAGATCT-ACTA-GCTTCAATCTGCTCCACTGTAAT
* * * *
7016198 CTCAGGGAGATAAGA-C--CT-GATGT-GATCTACTCTACTGTAA-
1 CTCAGGGAGATAAGATCTACTAGCT-TCAATCTGCTCCACTGTAAT
* * ** * *
7016238 CTTCAGAGAGATAGGATCTTTTA-TTTTAATCTGCTCCACTGTAAT
1 C-TCAGGGAGATAAGATCTACTAGCTTCAATCTGCTCCACTGTAAT
7016283 CTCAGGGAGATAAG
1 CTCAGGGAGATAAG
7016297 GCTGGTATCT
Statistics
Matches: 401, Mismatches: 111, Indels: 70
0.69 0.19 0.12
Matches are distributed among these distances:
40 2 0.00
41 54 0.13
42 2 0.00
43 6 0.01
44 164 0.41
45 24 0.06
46 122 0.30
47 26 0.06
48 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (45 bp):
CTCAGGGAGATAAGATCTACTAGCTTCAATCTGCTCCACTGTAAT
Found at i:7015858 original size:90 final size:90
Alignment explanation
Indices: 7015739--7016209 Score: 594
Period size: 90 Copynumber: 5.3 Consensus size: 90
7015729 TTTAATCCGC
* *
7015739 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATTTGCTCCGCTGTAATCTCAGGGAGA
1 TCCACTGTAATCTCAGGGAGATAGAATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
*
7015804 TAAGATCTGAAATTCTTCGGTCTAT
66 TAAGATCTAAAATTCTTCGGTCTAT
* *
7015829 TCCACTGTAATCTCAGGGAGATAGAATTACTAGCTTTAATATGCTCCGCTGTAATCTCAGGGAGA
1 TCCACTGTAATCTCAGGGAGATAGAATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
7015894 TAAGATCTAAAATTCTTCGGTCTAT
66 TAAGATCTAAAATTCTTCGGTCTAT
* * * * * ** *
7015919 TCCACTGTAATCTCAGGGAGATA-AGA--CCT-GATGCGATCTACTCTACTGTAA-CTTCAGAGA
1 TCCACTGTAATCTCAGGGAGATAGA-ATTACTAGCTTCAATCTGCTCCGCTGTAATC-TCAGGGA
* ** * *** ***
7015979 GATAAAATCCT-TTATTGTTTTAATCCGC
64 GATAAGAT-CTAAAATT-CTTCGGTCTAT
*
7016007 TCCACTGTAATCTCAGGGAGATAGAATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGAAGA
1 TCCACTGTAATCTCAGGGAGATAGAATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
*
7016072 CAAGATCTAAAATTCTTCGGTCTAT
66 TAAGATCTAAAATTCTTCGGTCTAT
* * *
7016097 TCCACTGTAATCTCAAGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGTAGA
1 TCCACTGTAATCTCAGGGAGATAGAATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
* *
7016162 TAAGATCTGAAATTCTTCGGTTTAT
66 TAAGATCTAAAATTCTTCGGTCTAT
7016187 TCCACTGTAATCTCAGGGAGATA
1 TCCACTGTAATCTCAGGGAGATA
7016210 AGACCTGATG
Statistics
Matches: 320, Mismatches: 51, Indels: 20
0.82 0.13 0.05
Matches are distributed among these distances:
86 1 0.00
87 30 0.09
88 32 0.10
89 2 0.01
90 224 0.70
91 30 0.09
92 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.32
Consensus pattern (90 bp):
TCCACTGTAATCTCAGGGAGATAGAATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
TAAGATCTAAAATTCTTCGGTCTAT
Found at i:7016042 original size:268 final size:266
Alignment explanation
Indices: 7015667--7016294 Score: 1001
Period size: 268 Copynumber: 2.4 Consensus size: 266
7015657 ACTACGCCGC
* * ** * *
7015667 CAGGGA-AGTAAGACCTGGTGCGACCTACTCTACTACAACCTCAGAGAGATAAGATC-TATTTTT
1 CAGGGAGA-TAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTTATTATT
* *
7015730 TTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATTTGCTCCGCTGTAATC
65 TTAATCCGCTCCACTGTAATCTCAGGGAGATAGAATTACTAGCTTCAATCTGCTCCGCTGTAATC
* * * *
7015795 TCAGGGAGATAAGATCTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAGAATTACT
130 TCAGGAAGACAAGATCTAAAATTCTTCGGTCTATTCCACTGTAATCTCAAGGAGATAGAATTACT
*
7015860 AGCTTTAATATGCTCCGCTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGGTCTATTCCACT
195 AGCTTCAATATGCTCCGCTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGGTCTATTCCACT
7015925 GTAATCT
260 GTAATCT
* *
7015932 CAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAAATCCTTTATTGT
1 CAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGAT-C-TTATTAT
7015997 TTTAATCCGCTCCACTGTAATCTCAGGGAGATAGAATTACTAGCTTCAATCTGCTCCGCTGTAAT
64 TTTAATCCGCTCCACTGTAATCTCAGGGAGATAGAATTACTAGCTTCAATCTGCTCCGCTGTAAT
*
7016062 CTCAGGAAGACAAGATCTAAAATTCTTCGGTCTATTCCACTGTAATCTCAAGGAGATAGGATTAC
129 CTCAGGAAGACAAGATCTAAAATTCTTCGGTCTATTCCACTGTAATCTCAAGGAGATAGAATTAC
* * * *
7016127 TAGCTTCAATCTGCTCCGCTGTAATCTCAGGTAGATAAGATCTGAAATTCTTCGGTTTATTCCAC
194 TAGCTTCAATATGCTCCGCTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGGTCTATTCCAC
7016192 TGTAATCT
259 TGTAATCT
* *
7016200 CAGGGAGATAAGACCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAGGATCTT-TTATTT
1 CAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTTATTATTT
*
7016264 TAATCTGCTCCACTGTAATCTCAGGGAGATA
66 TAATCCGCTCCACTGTAATCTCAGGGAGATA
7016295 AGGCTGGTAT
Statistics
Matches: 335, Mismatches: 24, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
265 82 0.24
266 4 0.01
267 1 0.00
268 248 0.74
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (266 bp):
CAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTTATTATTT
TAATCCGCTCCACTGTAATCTCAGGGAGATAGAATTACTAGCTTCAATCTGCTCCGCTGTAATCT
CAGGAAGACAAGATCTAAAATTCTTCGGTCTATTCCACTGTAATCTCAAGGAGATAGAATTACTA
GCTTCAATATGCTCCGCTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGGTCTATTCCACTG
TAATCT
Found at i:7016470 original size:44 final size:44
Alignment explanation
Indices: 7016338--7016472 Score: 109
Period size: 44 Copynumber: 3.1 Consensus size: 44
7016328 GCAGGAAGGT
* * *
7016338 AAGATCTGTTATCTTCAACCTACTCCACTACAACCGAGGGAGGC
1 AAGATCTGTTATCTTTAACCTGCTCCACTGCAACCGAGGGAGGC
* * * * * *
7016382 AAGGAT-TG-TGTC-TTAGATCTGTTTCACCGTCGATA-C-AGGAAGGC
1 AA-GATCTGTTATCTTTA-ACCTGCTCCACTG-C-A-ACCGAGGGAGGC
7016426 AAGATCTGTTATCTTTAACCTGCTCCACTGCAACCGAGGGAGGC
1 AAGATCTGTTATCTTTAACCTGCTCCACTGCAACCGAGGGAGGC
7016470 AAG
1 AAG
7016473 GCTGGGGTCT
Statistics
Matches: 66, Mismatches: 15, Indels: 20
0.65 0.15 0.20
Matches are distributed among these distances:
42 3 0.05
43 15 0.23
44 27 0.41
45 17 0.26
46 4 0.06
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.25
Consensus pattern (44 bp):
AAGATCTGTTATCTTTAACCTGCTCCACTGCAACCGAGGGAGGC
Found at i:7016609 original size:87 final size:87
Alignment explanation
Indices: 7016306--7016876 Score: 732
Period size: 87 Copynumber: 6.5 Consensus size: 87
7016296 GGCTGGTATC
** * * * *
7016306 TTCGATCTGCTTCGCTGTCAGCGCAGGAAGGTAAGATCTGTTATCTTCAACCTA-CTCCACTACA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAA-CTAGCTCCACTGCA
* * *
7016370 ACCGAGGGAGGCAAGGATTGTGTC
65 ACCGATGGAGGCAAGGCTT-TGTT
* * * * * * *
7016394 TTAGATCTGTTTCACCGTCGATACAGGAAGGCAAGATCTGTTATCTTTAACCT-GCTCCACTGCA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAA-CTAGCTCCACTGCA
* ** *
7016458 ACCGAGGGAGGCAAGGCTGGGGTC
65 ACCGATGGAGGCAAGGCT-TTGTT
* * * *
7016482 TTCGATCTGCTTTGCTATCTATGCAGGAAGGCAAGATCTGCTATCTTTAACTAGCTCCACTGCAG
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACTAGCTCCACTGCAA
7016547 CCGATGGAGGCAAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
** * *
7016569 TTCGATCTGCTTCATTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGTTCCACTGCAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACTAGCTCCACTGCAA
**
7016634 CCGATGGAGGTGAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
* * * * *
7016656 TTCGATCTGCTTCACTGTCAATGTAGGAAGACAAGATCTGTTATCTTTAACTAGCTCCACCGCAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACTAGCTCCACTGCAA
*
7016721 CTGATGGAGGCAAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
**
7016743 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACTAGCTCCACTGCAA
*
7016808 CCGATGGAGGCAAGGCTTTGCT
66 CCGATGGAGGCAAGGCTTTGTT
*
7016830 TTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTATCTT
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTT
7016877 CACTGATCTG
Statistics
Matches: 422, Mismatches: 58, Indels: 7
0.87 0.12 0.01
Matches are distributed among these distances:
87 282 0.67
88 140 0.33
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.29
Consensus pattern (87 bp):
TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACTAGCTCCACTGCAA
CCGATGGAGGCAAGGCTTTGTT
Found at i:7018125 original size:6 final size:6
Alignment explanation
Indices: 7018116--7018151 Score: 54
Period size: 6 Copynumber: 5.7 Consensus size: 6
7018106 CATTTTTACT
7018116 TTTTCA TTTTTCA TTTCTCA TTTTCA TTTTCA TTTT
1 TTTTCA -TTTTCA TTT-TCA TTTTCA TTTTCA TTTT
7018152 TTTGACTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 16 0.57
7 12 0.43
ACGTcount: A:0.14, C:0.17, G:0.00, T:0.69
Consensus pattern (6 bp):
TTTTCA
Found at i:7018125 original size:7 final size:7
Alignment explanation
Indices: 7018106--7018152 Score: 55
Period size: 7 Copynumber: 7.0 Consensus size: 7
7018096 TTAGCCTCTC
7018106 CATTTTT
1 CATTTTT
7018113 -ACTTTTT
1 CA-TTTTT
7018120 CATTTTT
1 CATTTTT
*
7018127 CATTTCT
1 CATTTTT
7018134 CA-TTTT
1 CATTTTT
7018140 CA-TTTT
1 CATTTTT
7018146 CATTTTT
1 CATTTTT
7018153 TTGACTTAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
6 12 0.34
7 22 0.63
8 1 0.03
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.68
Consensus pattern (7 bp):
CATTTTT
Found at i:7018153 original size:14 final size:13
Alignment explanation
Indices: 7018106--7018152 Score: 60
Period size: 13 Copynumber: 3.5 Consensus size: 13
7018096 TTAGCCTCTC
*
7018106 CATTTTTACTTTTT
1 CATTTTT-CATTTT
7018120 CATTTTTCATTTCT
1 CATTTTTCATTT-T
7018134 CA-TTTTCATTTT
1 CATTTTTCATTTT
7018146 CATTTTT
1 CATTTTT
7018153 TTGACTTAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
12 3 0.10
13 17 0.57
14 10 0.33
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.68
Consensus pattern (13 bp):
CATTTTTCATTTT
Found at i:7018976 original size:8 final size:8
Alignment explanation
Indices: 7018963--7019007 Score: 58
Period size: 8 Copynumber: 5.9 Consensus size: 8
7018953 CCTTGACCTC
7018963 TCCTTTTT
1 TCCTTTTT
7018971 TCCTTTTT
1 TCCTTTTT
7018979 T-CTTTTT
1 TCCTTTTT
*
7018986 TCCTTTTC
1 TCCTTTTT
7018994 T-CTTTTT
1 TCCTTTTT
*
7019001 TCATTTT
1 TCCTTTT
7019008 CATTTTCATT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
7 13 0.41
8 19 0.59
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (8 bp):
TCCTTTTT
Found at i:7018985 original size:15 final size:15
Alignment explanation
Indices: 7018965--7019008 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
7018955 TTGACCTCTC
*
7018965 CTTTTTTCCTTTTTT
1 CTTTTTTCCTTTTCT
7018980 CTTTTTTCCTTTTCT
1 CTTTTTTCCTTTTCT
*
7018995 CTTTTTTCATTTTC
1 CTTTTTTCCTTTTC
7019009 ATTTTCATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.02, C:0.23, G:0.00, T:0.75
Consensus pattern (15 bp):
CTTTTTTCCTTTTCT
Found at i:7025325 original size:16 final size:16
Alignment explanation
Indices: 7025285--7025328 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
7025275 GCATACGAGA
7025285 AATTTT-AAATAAAAT
1 AATTTTAAAATAAAAT
* **
7025300 AAATAAAAAATAAAAT
1 AATTTTAAAATAAAAT
7025316 AATTTTAAAATAA
1 AATTTTAAAATAA
7025329 CATATAAAAT
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
15 3 0.14
16 19 0.86
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
AATTTTAAAATAAAAT
Found at i:7031764 original size:15 final size:15
Alignment explanation
Indices: 7031744--7031773 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7031734 AACTGTGAAC
7031744 CTACTATAGGATCGG
1 CTACTATAGGATCGG
*
7031759 CTACTATAGGGTCGG
1 CTACTATAGGATCGG
7031774 TAAGCATCAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (15 bp):
CTACTATAGGATCGG
Found at i:7032427 original size:24 final size:24
Alignment explanation
Indices: 7032400--7032447 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
7032390 CGGTGACCAC
7032400 GGTTTTGGACTTTCATGGTTTTTA
1 GGTTTTGGACTTTCATGGTTTTTA
7032424 GGTTTTGGACTTTCATGGTTTTTA
1 GGTTTTGGACTTTCATGGTTTTTA
7032448 ACCCATATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.12, C:0.08, G:0.25, T:0.54
Consensus pattern (24 bp):
GGTTTTGGACTTTCATGGTTTTTA
Found at i:7036338 original size:24 final size:23
Alignment explanation
Indices: 7036306--7036392 Score: 93
Period size: 24 Copynumber: 3.6 Consensus size: 23
7036296 AGTAAAGAGT
7036306 AAAGGATGAATTGATGATATATGC
1 AAAGGATGAATTGA-GATATATGC
* * *
7036330 AAAGGATGAATTGACGGTAAAATGA
1 AAAGGATGAATTGA-GAT-ATATGC
* *
7036355 AAACGATGAATTGACAGTATATGC
1 AAAGGATGAATTGAGA-TATATGC
7036379 AAAGGATGAATTGA
1 AAAGGATGAATTGA
7036393 AGTTTCAGCA
Statistics
Matches: 51, Mismatches: 10, Indels: 4
0.78 0.15 0.06
Matches are distributed among these distances:
24 33 0.65
25 18 0.35
ACGTcount: A:0.45, C:0.06, G:0.25, T:0.24
Consensus pattern (23 bp):
AAAGGATGAATTGAGATATATGC
Found at i:7036363 original size:49 final size:49
Alignment explanation
Indices: 7036284--7036393 Score: 143
Period size: 49 Copynumber: 2.2 Consensus size: 49
7036274 TGTGAAAAAT
* * *
7036284 GGATGAATTGAAAGTAAAGAGTAAAGGATGAATTGA-TGATATATGCAAA
1 GGATGAATTGAAAGTAAAGAGAAAACGATGAATTGACAG-TATATGCAAA
**
7036333 GGATGAATTGACGGTAAA-ATGAAAACGATGAATTGACAGTATATGCAAA
1 GGATGAATTGAAAGTAAAGA-GAAAACGATGAATTGACAGTATATGCAAA
7036382 GGATGAATTGAA
1 GGATGAATTGAA
7036394 GTTTCAGCAT
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
48 1 0.02
49 51 0.96
50 1 0.02
ACGTcount: A:0.45, C:0.05, G:0.26, T:0.24
Consensus pattern (49 bp):
GGATGAATTGAAAGTAAAGAGAAAACGATGAATTGACAGTATATGCAAA
Found at i:7036368 original size:25 final size:24
Alignment explanation
Indices: 7036285--7036392 Score: 76
Period size: 25 Copynumber: 4.4 Consensus size: 24
7036275 GTGAAAAATG
* *
7036285 GATGAATTGAAAGTAAA-GAGTAAAG
1 GATGAATTGACAGTAAATGA--AAAC
* * * *
7036310 GATGAATTGA-TGATATATGCAAAG
1 GATGAATTGACAG-TAAATGAAAAC
*
7036334 GATGAATTGACGGTAAAATGAAAAC
1 GATGAATTGACAGT-AAATGAAAAC
* * *
7036359 GATGAATTGACAGTATATGCAAAG
1 GATGAATTGACAGTAAATGAAAAC
7036383 GATGAATTGA
1 GATGAATTGA
7036393 AGTTTCAGCA
Statistics
Matches: 68, Mismatches: 11, Indels: 9
0.77 0.12 0.10
Matches are distributed among these distances:
24 33 0.49
25 34 0.50
26 1 0.01
ACGTcount: A:0.45, C:0.05, G:0.26, T:0.24
Consensus pattern (24 bp):
GATGAATTGACAGTAAATGAAAAC
Found at i:7036516 original size:42 final size:43
Alignment explanation
Indices: 7036469--7036576 Score: 139
Period size: 42 Copynumber: 2.6 Consensus size: 43
7036459 TCATATAAGT
* * **
7036469 TTCAGTTAAACCCTAATGGGTTTCT-GATCAGCTCTTTTGAGC
1 TTCAGTTTAACCCTTATGGGTTTCTCGATCAGCTCTTACGAGC
* *
7036511 TTCAGTTTAACCCTTATAGGTTT-TCGTTCAGCTCTTACGAGC
1 TTCAGTTTAACCCTTATGGGTTTCTCGATCAGCTCTTACGAGC
*
7036553 TTCCGTTTAACCCTTATGGGTTTC
1 TTCAGTTTAACCCTTATGGGTTTC
7036577 CGTTTAGCTT
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
41 1 0.02
42 55 0.98
ACGTcount: A:0.19, C:0.23, G:0.18, T:0.41
Consensus pattern (43 bp):
TTCAGTTTAACCCTTATGGGTTTCTCGATCAGCTCTTACGAGC
Found at i:7043497 original size:30 final size:30
Alignment explanation
Indices: 7043454--7043912 Score: 580
Period size: 30 Copynumber: 15.2 Consensus size: 30
7043444 GGCAATATAT
*
7043454 ATGTATA--CATATACACATCAATTCGGCA
1 ATGTATATCCATATACAAATCAATTCGGCA
* *
7043482 ATGTATATCCATATACAAATCAATTTGACA
1 ATGTATATCCATATACAAATCAATTCGGCA
**
7043512 ATGTATATCTGTATACAAATCAATTCGGCA
1 ATGTATATCCATATACAAATCAATTCGGCA
* **
7043542 ATATATAAAACATATACAAATCAATTCGGCA
1 ATGTAT-ATCCATATACAAATCAATTCGGCA
*
7043573 ATGTATATTCATATACAAATCAATTCGGCA
1 ATGTATATCCATATACAAATCAATTCGGCA
* *
7043603 ATTTATATCCATATACAAATCATATTCGACA
1 ATGTATATCCATATACAAATCA-ATTCGGCA
* ** *
7043634 ATATATAAAACATATACAAATAAATTCGGCA
1 ATGTAT-ATCCATATACAAATCAATTCGGCA
* *
7043665 AAGTATATCCATATACAAATCAATTCGGTA
1 ATGTATATCCATATACAAATCAATTCGGCA
* *
7043695 ATGTATGTCCGTATACAAATCAATTCGGCA
1 ATGTATATCCATATACAAATCAATTCGGCA
* *
7043725 ATTTATATCCATATACAAATCAATTTGGCA
1 ATGTATATCCATATACAAATCAATTCGGCA
*
7043755 ATGTATATCCGTATACAAATCAATTCGGCA
1 ATGTATATCCATATACAAATCAATTCGGCA
* * *
7043785 ATATATGTCCATATACAAATCAATTCAGCA
1 ATGTATATCCATATACAAATCAATTCGGCA
* **
7043815 ATATATAAAACATATACAAATCAATTCGGCA
1 ATGTAT-ATCCATATACAAATCAATTCGGCA
* *
7043846 ATGTATATCCATAGACAAATCAATTCGACA
1 ATGTATATCCATATACAAATCAATTCGGCA
*
7043876 ATGTATATCCATATACAAATCAATTCGGAA
1 ATGTATATCCATATACAAATCAATTCGGCA
*
7043906 ATATATA
1 ATGTATA
7043913 AAACATATAC
Statistics
Matches: 368, Mismatches: 57, Indels: 10
0.85 0.13 0.02
Matches are distributed among these distances:
28 7 0.02
30 275 0.75
31 73 0.20
32 13 0.04
ACGTcount: A:0.43, C:0.17, G:0.09, T:0.31
Consensus pattern (30 bp):
ATGTATATCCATATACAAATCAATTCGGCA
Found at i:7043932 original size:91 final size:91
Alignment explanation
Indices: 7043433--7043923 Score: 705
Period size: 91 Copynumber: 5.4 Consensus size: 91
7043423 ATCTAATGCT
* * *
7043433 CAAATCAATTTGGCAATATATATGTATACATATACACATCAATTCGGCAATGTATATCCATATAC
1 CAAATCAATTCGGCAATATATA---AAACATATACAAATCAATTCGGCAATGTATATCCATATAC
* * **
7043498 AAATCAATTTGACAATGTATATCTGTATA
63 AAATCAATTCGGCAATGTATATCCATATA
*
7043527 CAAATCAATTCGGCAATATATAAAACATATACAAATCAATTCGGCAATGTATATTCATATACAAA
1 CAAATCAATTCGGCAATATATAAAACATATACAAATCAATTCGGCAATGTATATCCATATACAAA
*
7043592 TCAATTCGGCAATTTATATCCATATA
66 TCAATTCGGCAATGTATATCCATATA
* * *
7043618 CAAATCATATTCGACAATATATAAAACATATACAAATAAATTCGGCAAAGTATATCCATATACAA
1 CAAATCA-ATTCGGCAATATATAAAACATATACAAATCAATTCGGCAATGTATATCCATATACAA
* * *
7043683 ATCAATTCGGTAATGTATGTCCGTATA
65 ATCAATTCGGCAATGTATATCCATATA
* ** * *
7043710 CAAATCAATTCGGCAATTTAT-ATCCATATACAAATCAATTTGGCAATGTATATCCGTATACAAA
1 CAAATCAATTCGGCAATATATAAAACATATACAAATCAATTCGGCAATGTATATCCATATACAAA
* *
7043774 TCAATTCGGCAATATATGTCCATATA
66 TCAATTCGGCAATGTATATCCATATA
* *
7043800 CAAATCAATTCAGCAATATATAAAACATATACAAATCAATTCGGCAATGTATATCCATAGACAAA
1 CAAATCAATTCGGCAATATATAAAACATATACAAATCAATTCGGCAATGTATATCCATATACAAA
*
7043865 TCAATTCGACAATGTATATCCATATA
66 TCAATTCGGCAATGTATATCCATATA
*
7043891 CAAATCAATTCGGAAATATATAAAACATATACA
1 CAAATCAATTCGGCAATATATAAAACATATACA
7043924 TTTGAATTCA
Statistics
Matches: 355, Mismatches: 40, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
90 79 0.22
91 172 0.48
92 83 0.23
94 21 0.06
ACGTcount: A:0.44, C:0.17, G:0.09, T:0.30
Consensus pattern (91 bp):
CAAATCAATTCGGCAATATATAAAACATATACAAATCAATTCGGCAATGTATATCCATATACAAA
TCAATTCGGCAATGTATATCCATATA
Found at i:7050958 original size:30 final size:30
Alignment explanation
Indices: 7050922--7051430 Score: 676
Period size: 30 Copynumber: 16.9 Consensus size: 30
7050912 TATGTATATG
*
7050922 TATACAAATCAATTCGGCAATGTATATCAA
1 TATACAAATCAATTCGGCAATGTATATCCA
*
7050952 TATACAAATCAATTTGGCAATGTATATCCA
1 TATACAAATCAATTCGGCAATGTATATCCA
* * **
7050982 TATACAAATCAATGCGGCAATATATAAAACA
1 TATACAAATCAATTCGGCAATGTAT-ATCCA
*
7051013 TATACAAATCAATTCAGCAATGTATATCCA
1 TATACAAATCAATTCGGCAATGTATATCCA
* **
7051043 TATACAAATCAATTCAGCAATGTATGCCCA
1 TATACAAATCAATTCGGCAATGTATATCCA
*
7051073 TATACAAATCAATTCGGCAATGTATGTCCA
1 TATACAAATCAATTCGGCAATGTATATCCA
* *
7051103 TATACAAATCAATTCCGCAATGTATGTCCA
1 TATACAAATCAATTCGGCAATGTATATCCA
* * *
7051133 TATACAAATCAATTCCGCAATGTATGTCTA
1 TATACAAATCAATTCGGCAATGTATATCCA
* * * **
7051163 TGTACAAATCAATTCTGCAATATATAAAACA
1 TATACAAATCAATTCGGCAATGTAT-ATCCA
*
7051194 TATACAAATCAATTTGGCAATGTATATCCA
1 TATACAAATCAATTCGGCAATGTATATCCA
*
7051224 TATAGAAATCAATTCGGCAATGTATATCCA
1 TATACAAATCAATTCGGCAATGTATATCCA
* * *
7051254 TATATAAATCAATTCGACAATGTATGTCCA
1 TATACAAATCAATTCGGCAATGTATATCCA
* **
7051284 TATACAAATCAATTCGGCAATATATAAAACA
1 TATACAAATCAATTCGGCAATGTAT-ATCCA
*
7051315 TATACAAATCAATTCGACAATGTATATCCA
1 TATACAAATCAATTCGGCAATGTATATCCA
* * *
7051345 TATATAAATCAATTCGACAATGTATGTCCA
1 TATACAAATCAATTCGGCAATGTATATCCA
7051375 TATACAAATCAATTCGGCAATGTATATCCA
1 TATACAAATCAATTCGGCAATGTATATCCA
* *
7051405 TATACAAATCAATTCGACAATATATA
1 TATACAAATCAATTCGGCAATGTATA
7051431 AAACATATAC
Statistics
Matches: 423, Mismatches: 53, Indels: 6
0.88 0.11 0.01
Matches are distributed among these distances:
30 351 0.83
31 72 0.17
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.30
Consensus pattern (30 bp):
TATACAAATCAATTCGGCAATGTATATCCA
Found at i:7051420 original size:151 final size:151
Alignment explanation
Indices: 7050922--7051425 Score: 723
Period size: 151 Copynumber: 3.3 Consensus size: 151
7050912 TATGTATATG
* * * *
7050922 TATACAAATCAATTCGGCAATGTATATCAATATACAAATCAATTTGGCAATGTATATCCATATAC
1 TATACAAATCAATTCGGCAATGTATATCCATATACAAATCAATTCGACAATGTATGTCCATATAC
*
7050987 AAATCAATGCGGCAATATATAAAACATATACAAATCAATTC-AGCAATGTATATCCATATACAAA
66 AAATCAATTCGGCAATATATAAAACATATACAAATCAATTCGA-CAATGTATATCCATATACAAA
*
7051051 TCAATTC-AGCAATGTATGCCCA
130 TCAATTCGA-CAATGTATGTCCA
*
7051073 TATACAAATCAATTCGGCAATGTATGTCCATATACAAATCAATTCCG-CAATGTATGTCCATATA
1 TATACAAATCAATTCGGCAATGTATATCCATATACAAATCAATT-CGACAATGTATGTCCATATA
* * ** * * **
7051137 CAAATCAATTCCGCAATGTAT--GTCTATGTACAAATCAATTCTG-CAATATATAAAACATATAC
65 CAAATCAATTCGGCAATATATAAAAC-ATATACAAATCAATTC-GACAATGTAT-ATCCATATAC
* * *
7051199 AAATCAATTTGGCAATGTATATCCA
127 AAATCAATTCGACAATGTATGTCCA
* *
7051224 TATAGAAATCAATTCGGCAATGTATATCCATATATAAATCAATTCGACAATGTATGTCCATATAC
1 TATACAAATCAATTCGGCAATGTATATCCATATACAAATCAATTCGACAATGTATGTCCATATAC
*
7051289 AAATCAATTCGGCAATATATAAAACATATACAAATCAATTCGACAATGTATATCCATATATAAAT
66 AAATCAATTCGGCAATATATAAAACATATACAAATCAATTCGACAATGTATATCCATATACAAAT
7051354 CAATTCGACAATGTATGTCCA
131 CAATTCGACAATGTATGTCCA
7051375 TATACAAATCAATTCGGCAATGTATATCCATATACAAATCAATTCGACAAT
1 TATACAAATCAATTCGGCAATGTATATCCATATACAAATCAATTCGACAAT
7051426 ATATAAAACA
Statistics
Matches: 309, Mismatches: 34, Indels: 20
0.85 0.09 0.06
Matches are distributed among these distances:
149 1 0.00
150 24 0.08
151 260 0.84
152 23 0.07
153 1 0.00
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.30
Consensus pattern (151 bp):
TATACAAATCAATTCGGCAATGTATATCCATATACAAATCAATTCGACAATGTATGTCCATATAC
AAATCAATTCGGCAATATATAAAACATATACAAATCAATTCGACAATGTATATCCATATACAAAT
CAATTCGACAATGTATGTCCA
Found at i:7051450 original size:121 final size:121
Alignment explanation
Indices: 7050922--7051441 Score: 706
Period size: 121 Copynumber: 4.3 Consensus size: 121
7050912 TATGTATATG
* * ** *
7050922 TATACAAATCAATTCGGCAATGTATATCA-ATATACAAATCAATTTGGCAATGTATATCCATATA
1 TATACAAATCAATTCGACAATATATAAAACATATACAAATCAATTCGGCAATGTATATCCATATA
* * ** *
7050986 CAAATCAATGCGGCAATATATAAAACATATACAAATCAATTCAGCAATGTATATCCA
66 CAAATCAATTCGGCAATGTAT-ATCCATATACAAATCAATTCGGCAATGTATATCCA
* *** *
7051043 TATACAAATCAATTC-AGCAATGTAT-GCCCATATACAAATCAATTCGGCAATGTATGTCCATAT
1 TATACAAATCAATTCGA-CAATATATAAAACATATACAAATCAATTCGGCAATGTATATCCATAT
* * * * *
7051106 ACAAATCAATTCCGCAATGTATGTCCATATACAAATCAATTCCGCAATGTATGTCTA
65 ACAAATCAATTCGGCAATGTATATCCATATACAAATCAATTCGGCAATGTATATCCA
* *
7051163 TGTACAAATCAATTCTG-CAATATATAAAACATATACAAATCAATTTGGCAATGTATATCCATAT
1 TATACAAATCAATTC-GACAATATATAAAACATATACAAATCAATTCGGCAATGTATATCCATAT
* * * *
7051227 AGAAATCAATTCGGCAATGTATATCCATATATAAATCAATTCGACAATGTATGTCCA
65 ACAAATCAATTCGGCAATGTATATCCATATACAAATCAATTCGGCAATGTATATCCA
* *
7051284 TATACAAATCAATTCGGCAATATATAAAACATATACAAATCAATTCGACAATGTATATCCATATA
1 TATACAAATCAATTCGACAATATATAAAACATATACAAATCAATTCGGCAATGTATATCCATATA
* * *
7051349 TAAATCAATTCGACAATGTATGTCCATATACAAATCAATTCGGCAATGTATATCCA
66 CAAATCAATTCGGCAATGTATATCCATATACAAATCAATTCGGCAATGTATATCCA
7051405 TATACAAATCAATTCGACAATATATAAAACATATACA
1 TATACAAATCAATTCGACAATATATAAAACATATACA
7051442 TTTGAATTCA
Statistics
Matches: 355, Mismatches: 38, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
120 52 0.15
121 303 0.85
ACGTcount: A:0.43, C:0.18, G:0.09, T:0.30
Consensus pattern (121 bp):
TATACAAATCAATTCGACAATATATAAAACATATACAAATCAATTCGGCAATGTATATCCATATA
CAAATCAATTCGGCAATGTATATCCATATACAAATCAATTCGGCAATGTATATCCA
Found at i:7053989 original size:21 final size:21
Alignment explanation
Indices: 7053963--7054020 Score: 116
Period size: 21 Copynumber: 2.8 Consensus size: 21
7053953 GTTACTATAT
7053963 TATTGTTGGGAAATGTGTCCA
1 TATTGTTGGGAAATGTGTCCA
7053984 TATTGTTGGGAAATGTGTCCA
1 TATTGTTGGGAAATGTGTCCA
7054005 TATTGTTGGGAAATGT
1 TATTGTTGGGAAATGT
7054021 AATTGTTTTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.24, C:0.07, G:0.29, T:0.40
Consensus pattern (21 bp):
TATTGTTGGGAAATGTGTCCA
Found at i:7057920 original size:53 final size:54
Alignment explanation
Indices: 7057843--7057992 Score: 225
Period size: 53 Copynumber: 2.8 Consensus size: 54
7057833 TTAACTTTTT
* *
7057843 CCATATGATGCAATAA-CTCACCAATTACGGTCTTACATGATATGGTT-TTCTTC
1 CCATATGATGCCATAACCT-ACCAATTACGGTCTTACATGATATGGTTCTTCTTA
* *
7057896 CCATATGATGCCATAACCTGCCAATTACGGTCTTACACGATAT-GTTCTTCTTA
1 CCATATGATGCCATAACCTACCAATTACGGTCTTACATGATATGGTTCTTCTTA
*
7057949 CCATATGATGCCATAACCCACCAATTACGGTCTTACATGATATG
1 CCATATGATGCCATAACCTACCAATTACGGTCTTACATGATATG
7057993 ATCTTTTAGT
Statistics
Matches: 87, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
52 3 0.03
53 82 0.94
54 2 0.02
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (54 bp):
CCATATGATGCCATAACCTACCAATTACGGTCTTACATGATATGGTTCTTCTTA
Found at i:7060637 original size:22 final size:22
Alignment explanation
Indices: 7060603--7060981 Score: 499
Period size: 22 Copynumber: 17.2 Consensus size: 22
7060593 AGCAATTATC
** *
7060603 CAACATTCAGACAACATTTAAT
1 CAACATTTGGACAGCATTTAAT
*
7060625 TAACATTTGGACAGCATTTAAT
1 CAACATTTGGACAGCATTTAAT
* *
7060647 CAACAATTGGACAGCATTAAAT
1 CAACATTTGGACAGCATTTAAT
* *
7060669 CAACAATTGAACAGCATTTAAT
1 CAACATTTGGACAGCATTTAAT
*
7060691 CAACATTTGGATAGCATTTAAT
1 CAACATTTGGACAGCATTTAAT
* *
7060713 CAACAATTGGACAGCATTAAAT
1 CAACATTTGGACAGCATTTAAT
7060735 CAACATTTGGACAGCATTTAAT
1 CAACATTTGGACAGCATTTAAT
*
7060757 CAACATTTGGACAGCATTCAAT
1 CAACATTTGGACAGCATTTAAT
*
7060779 CAATATTTGGACAGCATTTAAT
1 CAACATTTGGACAGCATTTAAT
* *
7060801 CAATAATTT-GACAGCATTAAAT
1 CAA-CATTTGGACAGCATTTAAT
7060823 CAACATTTGGACAGCATTTAAT
1 CAACATTTGGACAGCATTTAAT
* *
7060845 CAACAATTGGACAGCATTCAAT
1 CAACATTTGGACAGCATTTAAT
* * *
7060867 CAACAATTGGACAACATTTAGT
1 CAACATTTGGACAGCATTTAAT
* * *
7060889 CAACAATTAGACAGCATTAAAT
1 CAACATTTGGACAGCATTTAAT
7060911 CAACATTTGGACAGCATTTAAT
1 CAACATTTGGACAGCATTTAAT
* * *
7060933 CAACAATTGGACAGCATTCAAA
1 CAACATTTGGACAGCATTTAAT
*
7060955 CAATATTTGGACAGCATTTAAT
1 CAACATTTGGACAGCATTTAAT
7060977 CAACA
1 CAACA
7060982 ATTTTTTACT
Statistics
Matches: 311, Mismatches: 44, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
21 4 0.01
22 303 0.97
23 4 0.01
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.28
Consensus pattern (22 bp):
CAACATTTGGACAGCATTTAAT
Found at i:7060685 original size:44 final size:44
Alignment explanation
Indices: 7060603--7060984 Score: 550
Period size: 44 Copynumber: 8.7 Consensus size: 44
7060593 AGCAATTATC
** * * * *
7060603 CAACATTCAGACAACATTTAATTAACATTTGGACAGCATTTAAT
1 CAACATTTGGACAGCATTTAATCAACAATTGGACAGCATTAAAT
* * * *
7060647 CAACAATTGGACAGCATTAAATCAACAATTGAACAGCATTTAAT
1 CAACATTTGGACAGCATTTAATCAACAATTGGACAGCATTAAAT
*
7060691 CAACATTTGGATAGCATTTAATCAACAATTGGACAGCATTAAAT
1 CAACATTTGGACAGCATTTAATCAACAATTGGACAGCATTAAAT
* *
7060735 CAACATTTGGACAGCATTTAATCAACATTTGGACAGCATTCAAT
1 CAACATTTGGACAGCATTTAATCAACAATTGGACAGCATTAAAT
* * *
7060779 CAATATTTGGACAGCATTTAATCAATAATTTGACAGCATTAAAT
1 CAACATTTGGACAGCATTTAATCAACAATTGGACAGCATTAAAT
*
7060823 CAACATTTGGACAGCATTTAATCAACAATTGGACAGCATTCAAT
1 CAACATTTGGACAGCATTTAATCAACAATTGGACAGCATTAAAT
* * * *
7060867 CAACAATTGGACAACATTTAGTCAACAATTAGACAGCATTAAAT
1 CAACATTTGGACAGCATTTAATCAACAATTGGACAGCATTAAAT
7060911 CAACATTTGGACAGCATTTAATCAACAATTGGACAGCATTCAAA-
1 CAACATTTGGACAGCATTTAATCAACAATTGGACAGCATT-AAAT
*
7060955 CAATATTTGGACAGCATTTAATCAACAATT
1 CAACATTTGGACAGCATTTAATCAACAATT
7060985 TTTTACTTCA
Statistics
Matches: 302, Mismatches: 35, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
44 299 0.99
45 3 0.01
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.29
Consensus pattern (44 bp):
CAACATTTGGACAGCATTTAATCAACAATTGGACAGCATTAAAT
Found at i:7066364 original size:26 final size:26
Alignment explanation
Indices: 7066335--7066397 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
7066325 CTACCTACAA
*
7066335 CAGTTTTAGAATATCATAACATATAT
1 CAGTTTCAGAATATCATAACATATAT
* *
7066361 CAGTTTCAGAATATCATAGCATGTAT
1 CAGTTTCAGAATATCATAACATATAT
*
7066387 GAGTTTCAGAA
1 CAGTTTCAGAA
7066398 CACTTATAGG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (26 bp):
CAGTTTCAGAATATCATAACATATAT
Found at i:7070801 original size:12 final size:12
Alignment explanation
Indices: 7070784--7070813 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
7070774 GCTACACAGG
7070784 CGTGTGGTTGGC
1 CGTGTGGTTGGC
7070796 CGTGTGGTTGGC
1 CGTGTGGTTGGC
7070808 CGTGTG
1 CGTGTG
7070814 CGAGACATGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.17, G:0.50, T:0.33
Consensus pattern (12 bp):
CGTGTGGTTGGC
Found at i:7071479 original size:13 final size:14
Alignment explanation
Indices: 7071458--7071501 Score: 56
Period size: 13 Copynumber: 3.3 Consensus size: 14
7071448 AGGGTAGGAT
*
7071458 TCTGTATATCT-TA
1 TCTGCATATCTATA
7071471 TCTGCATATCTATA
1 TCTGCATATCTATA
*
7071485 TCTGC-TATCTGTA
1 TCTGCATATCTATA
7071498 TCTG
1 TCTG
7071502 ACTGTATGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 21 0.75
14 7 0.25
ACGTcount: A:0.20, C:0.20, G:0.11, T:0.48
Consensus pattern (14 bp):
TCTGCATATCTATA
Found at i:7073293 original size:18 final size:18
Alignment explanation
Indices: 7073270--7073306 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
7073260 CCTCGTCACT
7073270 TGCTCGTATATGATTTTC
1 TGCTCGTATATGATTTTC
7073288 TGCTCGTATATGATTTTC
1 TGCTCGTATATGATTTTC
7073306 T
1 T
7073307 ACTAATTCGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.51
Consensus pattern (18 bp):
TGCTCGTATATGATTTTC
Found at i:7083320 original size:16 final size:15
Alignment explanation
Indices: 7083301--7083357 Score: 55
Period size: 16 Copynumber: 3.7 Consensus size: 15
7083291 TAATAAAAGA
7083301 AAAAAATAATGCTAAT
1 AAAAAATAATG-TAAT
*
7083317 AAAAGATACATGTATAT
1 AAAAAATA-ATGTA-AT
*
7083334 AATAAATAATG-AAT
1 AAAAAATAATGTAAT
7083348 AAAAAA-AATG
1 AAAAAATAATG
7083358 AGCGGCCATA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
13 4 0.11
14 7 0.20
15 1 0.03
16 12 0.34
17 11 0.31
ACGTcount: A:0.63, C:0.04, G:0.09, T:0.25
Consensus pattern (15 bp):
AAAAAATAATGTAAT
Found at i:7086215 original size:50 final size:50
Alignment explanation
Indices: 7086103--7086217 Score: 142
Period size: 50 Copynumber: 2.3 Consensus size: 50
7086093 CACACCACAA
* * * * *
7086103 CTCTTATAAGCGTCCTGATATTTGGCTCTCACAAGCTTCCCGTTATTTGG
1 CTCTTATAAGCTTCCTGATAATTGACTCTCACAAGCTTCCCGATAATTGG
* **
7086153 CTCTCA-AGAGCTTCCTGATAATTGACTCTCACAAGCTTCTTGATAATTGG
1 CTCTTATA-AGCTTCCTGATAATTGACTCTCACAAGCTTCCCGATAATTGG
7086203 CTCTTATAAGCTTCC
1 CTCTTATAAGCTTCC
7086218 CAATTAATGG
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
49 1 0.02
50 52 0.96
51 1 0.02
ACGTcount: A:0.22, C:0.26, G:0.16, T:0.37
Consensus pattern (50 bp):
CTCTTATAAGCTTCCTGATAATTGACTCTCACAAGCTTCCCGATAATTGG
Found at i:7086229 original size:75 final size:74
Alignment explanation
Indices: 7086118--7086317 Score: 192
Period size: 75 Copynumber: 2.7 Consensus size: 74
7086108 ATAAGCGTCC
* * * * * *
7086118 TGATATTTGGCTCTCACAAGCTTCCCGTTATTTGGCTC-TCAAGAGCTTCCTGATAATTGACTCT
1 TGATATTTGGCTCTTATAAGCTTCCCATTATATGGCTCTTC-AGAGCTTCCCGAT-ATTGACTCG
*
7086182 CACAAGCTTCT
64 CACAAGCTTCG
* *
7086193 TGATAATTGGCTCTTATAAGCTTCCCAATTA-ATGGCTCTTCAGAGCTTCCCGATATTGGCTCGC
1 TGATATTTGGCTCTTATAAGCTTCCC-ATTATATGGCTCTTCAGAGCTTCCCGATATTGACTCGC
**
7086257 ATGAGCTTCG
65 ACAAGCTTCG
* * * * *
7086267 CGATATTTGGCTCTTTTGAGCTTCCCGTT-TATGGCTCGT-ATGAGCTTCCCG
1 TGATATTTGGCTCTTATAAGCTTCCCATTATATGGCTCTTCA-GAGCTTCCCG
7086318 TTACATGGCT
Statistics
Matches: 104, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
72 1 0.01
73 20 0.19
74 37 0.36
75 41 0.39
76 5 0.05
ACGTcount: A:0.19, C:0.26, G:0.20, T:0.36
Consensus pattern (74 bp):
TGATATTTGGCTCTTATAAGCTTCCCATTATATGGCTCTTCAGAGCTTCCCGATATTGACTCGCA
CAAGCTTCG
Found at i:7086264 original size:49 final size:50
Alignment explanation
Indices: 7086211--7086361 Score: 125
Period size: 49 Copynumber: 3.1 Consensus size: 50
7086201 GGCTCTTATA
*
7086211 AGCTTCCCAATTAATGGCTCTTCAGAGCTTCCCGATAT-TGGCTCGCATG
1 AGCTTCCCAATTAATGGCTCTTAAGAGCTTCCCGATATATGGCTCGCATG
* ** * *
7086260 AGCTTCGCGATATT--TGGCTCTTTTGAGCTTCCCG-TTTATGGCTCGTATG
1 AGCTTC-CCA-ATTAATGGCTCTTAAGAGCTTCCCGATATATGGCTCGCATG
* ** * *
7086309 AGCTTCCC-GTTACATGGCTCGAAAGAGCTTCCCGATTACAT-GCTCGTATG
1 AGCTTCCCAATTA-ATGGCTCTTAAGAGCTTCCCGA-TATATGGCTCGCATG
7086359 AGC
1 AGC
7086362 ATACTTGTAT
Statistics
Matches: 81, Mismatches: 13, Indels: 15
0.74 0.12 0.14
Matches are distributed among these distances:
46 2 0.02
48 3 0.04
49 56 0.69
50 14 0.17
51 6 0.07
ACGTcount: A:0.19, C:0.26, G:0.23, T:0.32
Consensus pattern (50 bp):
AGCTTCCCAATTAATGGCTCTTAAGAGCTTCCCGATATATGGCTCGCATG
Found at i:7086286 original size:25 final size:24
Alignment explanation
Indices: 7086103--7086344 Score: 119
Period size: 25 Copynumber: 9.8 Consensus size: 24
7086093 CACACCACAA
* * *
7086103 CTCTTATAAGCGTCCTGATATTTGG
1 CTCTTATGAGCTTCCCGATA-TTGG
* ** *
7086128 CTCTCACAAGCTTCCCGTTATTTGG
1 CTCTTATGAGCTTCCCGATA-TTGG
* * * *
7086153 CTCTCAAGAGCTTCCTGATAATTGA
1 CTCTTATGAGCTTCCCGAT-ATTGG
* ** **
7086178 CTCTCACAAGCTTCTTGATAATTGG
1 CTCTTATGAGCTTCCCGAT-ATTGG
* * *
7086203 CTCTTATAAGCTTCCCAATTAATGG
1 CTCTTATGAGCTTCCCGA-TATTGG
7086228 CTCTTCA-GAGCTTCCCGATATTGG
1 CTCTT-ATGAGCTTCCCGATATTGG
** *
7086252 CTCGCATGAGCTTCGCGATATTTGG
1 CTCTTATGAGCTTCCCGATA-TTGG
* *
7086277 CTCTTTTGAGCTTCCCG-TTTATGG
1 CTCTTATGAGCTTCCCGATAT-TGG
* * *
7086301 CTCGTATGAGCTTCCCGTTACATGG
1 CTCTTATGAGCTTCCCGATA-TTGG
** *
7086326 CTCGAAAGAGCTTCCCGAT
1 CTCTTATGAGCTTCCCGAT
7086345 TACATGCTCG
Statistics
Matches: 171, Mismatches: 38, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
23 2 0.01
24 39 0.23
25 127 0.74
26 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.19, T:0.35
Consensus pattern (24 bp):
CTCTTATGAGCTTCCCGATATTGG
Found at i:7086327 original size:74 final size:74
Alignment explanation
Indices: 7086194--7086344 Score: 171
Period size: 74 Copynumber: 2.0 Consensus size: 74
7086184 CAAGCTTCTT
* * * *
7086194 GATAATTGGCTCTTATAAGCTTCCCAATTAATGGCTCTTCAGAGCTTCCCGATATTGGCTCGCAT
1 GATAATTGGCTCTTATAAGCTTCCCAATTAATGGCTCGTCAGAGCTTCCCGATAATGGCTCGAAA
*
7086259 GAGCTTCGC
66 GAGCTTCCC
* * * * * *
7086268 GATATTTGGCTCTTTTGAGCTTCCC-GTTTATGGCTCGT-ATGAGCTTCCCGTTACATGGCTCGA
1 GATAATTGGCTCTTATAAGCTTCCCAATTAATGGCTCGTCA-GAGCTTCCCGATA-ATGGCTCGA
7086331 AAGAGCTTCCC
64 AAGAGCTTCCC
7086342 GAT
1 GAT
7086345 TACATGCTCG
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
72 1 0.02
73 22 0.34
74 41 0.64
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (74 bp):
GATAATTGGCTCTTATAAGCTTCCCAATTAATGGCTCGTCAGAGCTTCCCGATAATGGCTCGAAA
GAGCTTCCC
Found at i:7086361 original size:25 final size:25
Alignment explanation
Indices: 7086200--7086361 Score: 118
Period size: 25 Copynumber: 6.6 Consensus size: 25
7086190 TCTTGATAAT
* * *
7086200 TGGCTCTTATAAGCTTCCCAATTA-A
1 TGGCTCGTATGAGCTTCCC-GTTACA
* * *
7086225 TGGCTCTTCA-GAGCTTCCCGATA-T
1 TGGCTCGT-ATGAGCTTCCCGTTACA
* * * **
7086249 TGGCTCGCATGAGCTTCGCGATATT
1 TGGCTCGTATGAGCTTCCCGTTACA
* * *
7086274 TGGCTCTTTTGAGCTTCCCGTT-TA
1 TGGCTCGTATGAGCTTCCCGTTACA
7086298 TGGCTCGTATGAGCTTCCCGTTACA
1 TGGCTCGTATGAGCTTCCCGTTACA
* *
7086323 TGGCTCGAAAGAGCTTCCCGATTACA
1 TGGCTCGTATGAGCTTCCCG-TTACA
7086349 T-GCTCGTATGAGC
1 TGGCTCGTATGAGC
7086362 ATACTTGTAT
Statistics
Matches: 112, Mismatches: 20, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
23 1 0.01
24 41 0.37
25 63 0.56
26 7 0.06
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.33
Consensus pattern (25 bp):
TGGCTCGTATGAGCTTCCCGTTACA
Found at i:7087337 original size:43 final size:43
Alignment explanation
Indices: 7087288--7087377 Score: 162
Period size: 43 Copynumber: 2.1 Consensus size: 43
7087278 CACGGACGCA
*
7087288 TGTCTCAACCGTGTGTGACACACGGCCATGTGACATGGTCGTG
1 TGTCTCAACCGTGTGTGACACACGGCCATGTGACACGGTCGTG
*
7087331 TGTCTCAATCGTGTGTGACACACGGCCATGTGACACGGTCGTG
1 TGTCTCAACCGTGTGTGACACACGGCCATGTGACACGGTCGTG
7087374 TGTC
1 TGTC
7087378 CCTTGTATTT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.27
Consensus pattern (43 bp):
TGTCTCAACCGTGTGTGACACACGGCCATGTGACACGGTCGTG
Found at i:7087562 original size:83 final size:82
Alignment explanation
Indices: 7087418--7087570 Score: 209
Period size: 83 Copynumber: 1.9 Consensus size: 82
7087408 AGTATACTCA
* * * * *
7087418 AAATTTTTCACACGGCCTAGCACCCAGGCGTGTGGTTTGGCCGTGTGTCCCTTGCATCTTATAAA
1 AAATTATTCACACGGCCTAGCACACAGGCGTGTGGCTTGGCCGTGTGACCCTTGCACCTTATAAA
7087483 TTGCAAAACTGAATGTTC
66 -TGCAAAACTGAATGTTC
* * *
7087501 AAATTATTCACACGGCCTGGCACACGGGCGTGTGGCTTGGCCGTGTGA-CCTCTGCACCTTATTA
1 AAATTATTCACACGGCCTAGCACACAGGCGTGTGGCTTGGCCGTGTGACCCT-TGCACCTTATAA
7087565 ATGCAA
65 ATGCAA
7087571 GTCAGTATGC
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
82 8 0.13
83 53 0.87
ACGTcount: A:0.22, C:0.25, G:0.24, T:0.29
Consensus pattern (82 bp):
AAATTATTCACACGGCCTAGCACACAGGCGTGTGGCTTGGCCGTGTGACCCTTGCACCTTATAAA
TGCAAAACTGAATGTTC
Found at i:7094911 original size:81 final size:82
Alignment explanation
Indices: 7094805--7095155 Score: 429
Period size: 81 Copynumber: 4.3 Consensus size: 82
7094795 GACAGGATTG
* * * * * *
7094805 AATCTCGAAACAAAATTATTTAATTAAATCTTATTTGGAAATAAAATCAAAATCGAATAAAATAT
1 AATCCCGAAACAGAATTATTCAATTAATTCTCATTTGGAAACAAAATCAAAATCGAATAAAATAT
7094870 GTTAAATGGCAGGAAT-
66 GTTAAATGGCAGGAATA
* *
7094886 AATCCCGGAACAGAATTATTCAATTAATTCTCATTTGGAAACAAAATCAAAATCGAATAAAATCT
1 AATCCCGAAACAGAATTATTCAATTAATTCTCATTTGGAAACAAAATCAAAATCGAATAAAATAT
* * *
7094951 ATT-AATGACGGGAATA
66 GTTAAATGGCAGGAATA
* * * * * *
7094967 AATTCCGGAACAGAATTATTCAATTAATTCTCATCTGGAAACAAAATAAAAATCAAATCAAATAT
1 AATCCCGAAACAGAATTATTCAATTAATTCTCATTTGGAAACAAAATCAAAATCGAATAAAATAT
*
7095032 GTTAAATGGCAAGAATA
66 GTTAAATGGCAGGAATA
* * * * *
7095049 AATCCTGAAATAGAATTATTCAATTAATTCTCGTTTGGAAACAAAATCAAAAT-GAAACAAAATC
1 AATCCCGAAACAGAATTATTCAATTAATTCTCATTTGGAAACAAAATCAAAATCG-AATAAAATA
** *
7095113 TGTTAAACAGCGGGAATA
65 TGTTAAATGGCAGGAATA
*
7095131 AATCCCGAAACAGAATTATTTAATT
1 AATCCCGAAACAGAATTATTCAATT
7095156 TTAACTTTTT
Statistics
Matches: 228, Mismatches: 39, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
80 10 0.04
81 120 0.53
82 98 0.43
ACGTcount: A:0.47, C:0.13, G:0.12, T:0.28
Consensus pattern (82 bp):
AATCCCGAAACAGAATTATTCAATTAATTCTCATTTGGAAACAAAATCAAAATCGAATAAAATAT
GTTAAATGGCAGGAATA
Found at i:7095088 original size:163 final size:163
Alignment explanation
Indices: 7094805--7095155 Score: 481
Period size: 162 Copynumber: 2.2 Consensus size: 163
7094795 GACAGGATTG
* * * * * * *
7094805 AATCTCGAAACAAAATTATTTAATTAAATCTTATTTGGAAATAAAATCAAAATCGAATAAAATAT
1 AATCCCGAAACAGAATTATTTAATTAAATCTCATCTGGAAACAAAATAAAAATCAAATAAAATAT
* *
7094870 GTTAAATGGCAGGAATAATCCCGGAACAGAATTATTCAATTAATTCTCATTTGGAAACAAAATCA
66 GTTAAATGGCAAGAATAATCCCGAAACAGAATTATTCAATTAATTCTCATTTGGAAACAAAATCA
* **
7094935 AAATCG-AATAAAATCTATTAATGA-CGGGAATA
131 AAAT-GAAACAAAATCTATTAAACAGCGGGAATA
* * * * *
7094967 AATTCCGGAACAGAATTATTCAATTAATTCTCATCTGGAAACAAAATAAAAATCAAATCAAATAT
1 AATCCCGAAACAGAATTATTTAATTAAATCTCATCTGGAAACAAAATAAAAATCAAATAAAATAT
* * *
7095032 GTTAAATGGCAAGAATAAATCCTGAAATAGAATTATTCAATTAATTCTCGTTTGGAAACAAAATC
66 GTTAAATGGCAAGAAT-AATCCCGAAACAGAATTATTCAATTAATTCTCATTTGGAAACAAAATC
*
7095097 AAAATGAAACAAAATCTGTTAAACAGCGGGAATA
130 AAAATGAAACAAAATCTATTAAACAGCGGGAATA
7095131 AATCCCGAAACAGAATTATTTAATT
1 AATCCCGAAACAGAATTATTTAATT
7095156 TTAACTTTTT
Statistics
Matches: 162, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
162 69 0.43
163 63 0.39
164 30 0.19
ACGTcount: A:0.47, C:0.13, G:0.12, T:0.28
Consensus pattern (163 bp):
AATCCCGAAACAGAATTATTTAATTAAATCTCATCTGGAAACAAAATAAAAATCAAATAAAATAT
GTTAAATGGCAAGAATAATCCCGAAACAGAATTATTCAATTAATTCTCATTTGGAAACAAAATCA
AAATGAAACAAAATCTATTAAACAGCGGGAATA
Found at i:7095412 original size:50 final size:50
Alignment explanation
Indices: 7095283--7095414 Score: 162
Period size: 50 Copynumber: 2.7 Consensus size: 50
7095273 GCGAACAAAT
* * *
7095283 ATAAATATTTATATTTATATT-AAATA-CAATATCTGAACAAATAATATAA
1 ATAAATATTTATATTTATATTAAAATATC-ATATCTAAACAAAAAAAATAA
* * * *
7095332 ACAAATATTTATATTTATGTAAAAACATCATATCTAAACAAAAAAAATTAA
1 ATAAATATTTATATTTATATTAAAATATCATATCTAAACAAAAAAAA-TAA
7095383 ATAAATATTTATATTTAT-TTAAAATATCATAT
1 ATAAATATTTATATTTATATTAAAATATCATAT
7095415 TTGAAAACAA
Statistics
Matches: 70, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
49 18 0.26
50 31 0.44
51 21 0.30
ACGTcount: A:0.53, C:0.07, G:0.02, T:0.39
Consensus pattern (50 bp):
ATAAATATTTATATTTATATTAAAATATCATATCTAAACAAAAAAAATAA
Found at i:7096491 original size:5 final size:5
Alignment explanation
Indices: 7096481--7096508 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
7096471 TAAAAAAAGG
7096481 TTATT TTATT TTATT TTATT TTATT TTA
1 TTATT TTATT TTATT TTATT TTATT TTA
7096509 CTGTGGGACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:7098169 original size:5 final size:5
Alignment explanation
Indices: 7098159--7098187 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
7098149 TATATTCATA
7098159 TTTAT TTTAT TTTAT TTTAT TTTAT TTTA
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTA
7098188 AATTTGAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTAT
Found at i:7100147 original size:24 final size:22
Alignment explanation
Indices: 7100118--7100161 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
7100108 AAAGAGCGCA
*
7100118 AGCAGCAACCACGCACAAAAAAAC
1 AGCAGCAA-AACGCA-AAAAAAAC
7100142 AGCAGCAAAACGCAAAAAAA
1 AGCAGCAAAACGCAAAAAAA
7100162 GGCCAGAGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 5 0.26
24 8 0.42
ACGTcount: A:0.59, C:0.27, G:0.14, T:0.00
Consensus pattern (22 bp):
AGCAGCAAAACGCAAAAAAAAC
Found at i:7118814 original size:40 final size:40
Alignment explanation
Indices: 7118732--7118816 Score: 100
Period size: 40 Copynumber: 2.1 Consensus size: 40
7118722 AAAAATTATA
* * * ** *
7118732 TTTAATACAATAAAATATTTATTATATTTTTTTGAGTTTT
1 TTTAATAAAATAAAACATTGATTATATTTTGGTGAGTATT
7118772 TTTAATAAAATAAAACATTGATTATATTTATGGT-AGTATT
1 TTTAATAAAATAAAACATTGATTATATTT-TGGTGAGTATT
7118812 TTTAA
1 TTTAA
7118817 GTATTAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
40 36 0.95
41 2 0.05
ACGTcount: A:0.39, C:0.02, G:0.07, T:0.52
Consensus pattern (40 bp):
TTTAATAAAATAAAACATTGATTATATTTTGGTGAGTATT
Found at i:7119587 original size:18 final size:18
Alignment explanation
Indices: 7119564--7119606 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
7119554 ACCATAACAA
* *
7119564 TAGAAATAAGATATTGAG
1 TAGAAATAACAAATTGAG
*
7119582 TAGAAATTACAAATTGAG
1 TAGAAATAACAAATTGAG
7119600 -AGAAATA
1 TAGAAATA
7119607 TCCAATTAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.53, C:0.02, G:0.19, T:0.26
Consensus pattern (18 bp):
TAGAAATAACAAATTGAG
Found at i:7120697 original size:288 final size:280
Alignment explanation
Indices: 7120073--7120766 Score: 1014
Period size: 280 Copynumber: 2.4 Consensus size: 280
7120063 TAAAGATATA
*
7120073 ATAAAAGGTCTCAGACATCCAAGGAAGGATAAAAGCAGCACAAGCTCTCAAGCCCGGCGAAA-GC
1 ATAAAAGGTCTCAGACATCCAAGGAAGGA-AGAAGCAGCACAAGCTCTCAAGCCCGGCGAAAGGC
* *
7120137 GAAAGCTCTCAGGCGGCCACTGCGAATGTTTTGAGAAACAAGCCTTACAACTTATCATCATAAAC
65 GAAAGCTCTTAGACGGCCACTGCGAATGTTTTGAGAAACAAGCCTTACAACTTATCATCATAAAC
** *
7120202 CCATACACATGAAATATATTATCATTTGACTCAATTTTATGAATACCGTTTATCAATGGAACTGA
130 CCATACACAACAAATATATTATCATTTGACTCAATTTTAAGAATACCGTTTATCAATGGAACTGA
* * *
7120267 AAAAATAGGAAAAATATACAACCAGATTTCTGAGAAAATAATTGGATTTTCAAGCGCAAATAATG
195 AAAAAAAGGAAAAATATACAACCAGATTTCTGAGAAAATAACTGGATTTTCAAGCACAAATAATG
*
7120332 AAAAACAACTATATACAAGTC
260 AAAAACAACCATATACAAGTC
*
7120353 ATAAAAGGTCTCAAACATCCAAGGAAGGAATGAAGCAGCACAAGCTCTCAAGCCCGGCGAAAGGC
1 ATAAAAGGTCTCAGACATCCAAGGAAGGAA-GAAGCAGCACAAGCTCTCAAGCCCGGCGAAAGGC
* ***
7120418 GAAAGCTCTTAGTCGGCCACTGCGAATGTTTTGAGAAACAAGCCTTTGGA-TTATCATCATAAAC
65 GAAAGCTCTTAGACGGCCACTGCGAATGTTTTGAGAAACAAGCCTTACAACTTATCATCATAAAC
* * * * * * *
7120482 CTATACACAACAAATATATTTTCCTTTGACTGAATTTTAAGAATATCGTTTATCTATTGAACTGA
130 CCATACACAACAAATATATTATCATTTGACTCAATTTTAAGAATACCGTTTATCAATGGAACTG-
* * * * *
7120547 TAAAATAAAAGGGGAAAAAATGTACAACCAGATTTCTGAGGAAGTGACTGGGTTTTCAAGCACAA
194 -AAAA-AAAA--GG-AAAAATATACAACCAGATTTCTGAGAAAATAACTGGATTTTCAAGCACAA
* *
7120612 ATAGTGAAAACAACAACCATATAGAAGTC
254 ATAATG-AAA-AACAACCATATACAAGTC
7120641 ATAAAAGGTCTCAGACATCCAAGGAAGGAAGGAAGCAGCACAAGCTCTCAAGCCCGGCGAAAGGC
1 ATAAAAGGTCTCAGACATCCAAGGAAGGAA-GAAGCAGCACAAGCTCTCAAGCCCGGCGAAAGGC
7120706 GAAAGCTCTTAGACGGCCACTGCGAATGTTTTGAGAAACAAGCCTTACAACTTATCATCAT
65 GAAAGCTCTTAGACGGCCACTGCGAATGTTTTGAGAAACAAGCCTTACAACTTATCATCAT
7120767 CGACTTTATA
Statistics
Matches: 369, Mismatches: 34, Indels: 13
0.89 0.08 0.03
Matches are distributed among these distances:
279 1 0.00
280 126 0.34
281 47 0.13
282 4 0.01
283 3 0.01
285 2 0.01
286 48 0.13
287 3 0.01
288 125 0.34
289 10 0.03
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.23
Consensus pattern (280 bp):
ATAAAAGGTCTCAGACATCCAAGGAAGGAAGAAGCAGCACAAGCTCTCAAGCCCGGCGAAAGGCG
AAAGCTCTTAGACGGCCACTGCGAATGTTTTGAGAAACAAGCCTTACAACTTATCATCATAAACC
CATACACAACAAATATATTATCATTTGACTCAATTTTAAGAATACCGTTTATCAATGGAACTGAA
AAAAAAGGAAAAATATACAACCAGATTTCTGAGAAAATAACTGGATTTTCAAGCACAAATAATGA
AAAACAACCATATACAAGTC
Found at i:7121151 original size:101 final size:101
Alignment explanation
Indices: 7120976--7121179 Score: 408
Period size: 101 Copynumber: 2.0 Consensus size: 101
7120966 AAGTTGATGA
7120976 CTAGTAAAAATCAGATTTAATTAACATAAAAGAAAAACATATTTATACTACGGGGTTAAAAAAAG
1 CTAGTAAAAATCAGATTTAATTAACATAAAAGAAAAACATATTTATACTACGGGGTTAAAAAAAG
7121041 TCTCAGACATCCAAGGAAGGAGCAAAACAGCAGAAG
66 TCTCAGACATCCAAGGAAGGAGCAAAACAGCAGAAG
7121077 CTAGTAAAAATCAGATTTAATTAACATAAAAGAAAAACATATTTATACTACGGGGTTAAAAAAAG
1 CTAGTAAAAATCAGATTTAATTAACATAAAAGAAAAACATATTTATACTACGGGGTTAAAAAAAG
7121142 TCTCAGACATCCAAGGAAGGAGCAAAACAGCAGAAG
66 TCTCAGACATCCAAGGAAGGAGCAAAACAGCAGAAG
7121178 CT
1 CT
7121180 CTCAAGCCCG
Statistics
Matches: 103, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
101 103 1.00
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (101 bp):
CTAGTAAAAATCAGATTTAATTAACATAAAAGAAAAACATATTTATACTACGGGGTTAAAAAAAG
TCTCAGACATCCAAGGAAGGAGCAAAACAGCAGAAG
Found at i:7123531 original size:3 final size:3
Alignment explanation
Indices: 7123523--7123551 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
7123513 ACGAAGAAAA
7123523 ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
7123552 TATTATTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:7123556 original size:3 final size:3
Alignment explanation
Indices: 7123550--7123628 Score: 158
Period size: 3 Copynumber: 26.3 Consensus size: 3
7123540 GATGATGATG
7123550 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
7123598 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
7123629 AAACATGTTA
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 76 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:7126598 original size:56 final size:51
Alignment explanation
Indices: 7126338--7126634 Score: 302
Period size: 50 Copynumber: 5.8 Consensus size: 51
7126328 GATAATAACA
* *** * *
7126338 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGGTGTTTC-ATGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGATCT-CGG
* * * ** * * *
7126387 TGCCAATGTCATATCCCAGATATGGTCTTACATGGGAGTTCT-TATATTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGATCTCGG
*
7126437 TGCCCATGCCATGTCCCAGACATGGTCTTACGA-GGGACCTCTC-ATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTAC-ATGGGACCTCTCGATCTCGG
* *
7126487 TGCCAAAGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCG-TCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGATCTCGG
*
7126537 TGCCAATGCCATGTCCCAGACATGGTTTTACATGGGACCTCTCATGATCTCAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC--GATCTC--GG
* *
7126592 ATGCCAATGTCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
7126635 TTACCCAAAT
Statistics
Matches: 208, Mismatches: 27, Indels: 19
0.82 0.11 0.07
Matches are distributed among these distances:
49 38 0.18
50 123 0.59
51 1 0.00
52 1 0.00
53 4 0.02
55 2 0.01
56 39 0.19
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.29
Consensus pattern (51 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGATCTCGG
Found at i:7131440 original size:152 final size:152
Alignment explanation
Indices: 7131164--7131468 Score: 601
Period size: 152 Copynumber: 2.0 Consensus size: 152
7131154 TCATCAAATA
7131164 ACCATAAATGGACAAGATTTAGAGTTTCTTAGTGACTCTTGAAGGAGTCTCTGTTGAAGAGGATG
1 ACCATAAATGGACAAGATTTAGAGTTTCTTAGTGACTCTTGAAGGAGTCTCTGTTGAAGAGGATG
7131229 GCAACAAGAAAGATGATGAAACCACAACCAAAGATGATATTTTTATACTTTTGAAAGCTAACAAG
66 GCAACAAGAAAGATGATGAAACCACAACCAAAGATGATATTTTTATACTTTTGAAAGCTAACAAG
7131294 AATAAAATCTATTGAATGCTTT
131 AATAAAATCTATTGAATGCTTT
*
7131316 ACCATAAATGGACAAGATTTAGAGTTTCTTAGTGACTCTTGAAGGAGTCTTTGTTGAAGAGGATG
1 ACCATAAATGGACAAGATTTAGAGTTTCTTAGTGACTCTTGAAGGAGTCTCTGTTGAAGAGGATG
7131381 GCAACAAGAAAGATGATGAAACCACAACCAAAGATGATATTTTTATACTTTTGAAAGCTAACAAG
66 GCAACAAGAAAGATGATGAAACCACAACCAAAGATGATATTTTTATACTTTTGAAAGCTAACAAG
7131446 AATAAAATCTATTGAATGCTTT
131 AATAAAATCTATTGAATGCTTT
7131468 A
1 A
7131469 AAGAGAACTT
Statistics
Matches: 152, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
152 152 1.00
ACGTcount: A:0.39, C:0.13, G:0.19, T:0.29
Consensus pattern (152 bp):
ACCATAAATGGACAAGATTTAGAGTTTCTTAGTGACTCTTGAAGGAGTCTCTGTTGAAGAGGATG
GCAACAAGAAAGATGATGAAACCACAACCAAAGATGATATTTTTATACTTTTGAAAGCTAACAAG
AATAAAATCTATTGAATGCTTT
Found at i:7137559 original size:31 final size:29
Alignment explanation
Indices: 7137484--7137561 Score: 75
Period size: 31 Copynumber: 2.6 Consensus size: 29
7137474 AATTTGCAAA
* *
7137484 TTTAGTCCTTATACTTTTATTTGATCAAT
1 TTTAGTCCATATACTTTTAATTGATCAAT
* * * *
7137513 TTCAGTCCATGTACTTTTCAAATTGCTCACT
1 TTTAGTCCATATACTTTT--AATTGATCAAT
*
7137544 TTTAGTCCCTATACTTTT
1 TTTAGTCCATATACTTTT
7137562 GTAATTATGA
Statistics
Matches: 38, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
29 15 0.39
31 23 0.61
ACGTcount: A:0.22, C:0.21, G:0.08, T:0.50
Consensus pattern (29 bp):
TTTAGTCCATATACTTTTAATTGATCAAT
Found at i:7142290 original size:24 final size:24
Alignment explanation
Indices: 7142256--7142307 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
7142246 TTTCTAGAAG
* * *
7142256 ATTTAGTATTTATGAGTATAATTT
1 ATTTAGCATTTATGAGCATAATAT
*
7142280 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATGAGCATAATAT
7142304 ATTT
1 ATTT
7142308 GACTTTGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.52
Consensus pattern (24 bp):
ATTTAGCATTTATGAGCATAATAT
Found at i:7145266 original size:21 final size:22
Alignment explanation
Indices: 7145240--7145309 Score: 70
Period size: 23 Copynumber: 3.0 Consensus size: 22
7145230 TAATGTAATT
7145240 ATTATTTTTTATATATATGTA-
1 ATTATTTTTTATATATATGTAG
*
7145261 ATTATTTTTTATAATTTATATATATAG
1 ATTA-TTTTT-T-A--TATATATGTAG
7145288 ATTTATTTTTTATATATATGTA
1 A-TTATTTTTTATATATATGTA
7145310 CATGTAAATA
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
21 4 0.10
22 5 0.12
23 10 0.25
24 1 0.03
25 1 0.03
26 10 0.25
27 6 0.15
28 3 0.08
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.61
Consensus pattern (22 bp):
ATTATTTTTTATATATATGTAG
Found at i:7145272 original size:28 final size:28
Alignment explanation
Indices: 7145247--7145301 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
7145237 ATTATTATTT
7145247 TTTATATATAT-GTAATTATTTTTTATAA
1 TTTATATATATAG-AATTATTTTTTATAA
*
7145275 TTTATATATATAGATTTATTTTTTATA
1 TTTATATATATAGAATTATTTTTTATA
7145302 TATATGTACA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 24 0.96
29 1 0.04
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.62
Consensus pattern (28 bp):
TTTATATATATAGAATTATTTTTTATAA
Found at i:7145727 original size:27 final size:26
Alignment explanation
Indices: 7145694--7145746 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
7145684 CATTGTCATT
*
7145694 GTTTATTTTTTTATGTATATTAGTTTC
1 GTTTATTTATTTATGTATATTA-TTTC
* *
7145721 GTTTATTTATTTGTTTATATTATTTC
1 GTTTATTTATTTATGTATATTATTTC
7145747 TATGTCATTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.19, C:0.04, G:0.09, T:0.68
Consensus pattern (26 bp):
GTTTATTTATTTATGTATATTATTTC
Found at i:7145743 original size:13 final size:14
Alignment explanation
Indices: 7145709--7145746 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
7145699 TTTTTTTATG
7145709 TATATTAGTTTCGTT
1 TATATTA-TTTCGTT
7145724 TAT-TTATTT-GTT
1 TATATTATTTCGTT
7145736 TATATTATTTC
1 TATATTATTTC
7145747 TATGTCATTG
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 6 0.29
13 9 0.43
14 3 0.14
15 3 0.14
ACGTcount: A:0.21, C:0.05, G:0.08, T:0.66
Consensus pattern (14 bp):
TATATTATTTCGTT
Found at i:7152841 original size:49 final size:50
Alignment explanation
Indices: 7152749--7152846 Score: 144
Period size: 49 Copynumber: 2.0 Consensus size: 50
7152739 ATCTATTTAT
* * * * *
7152749 AGGTTGAAAAAACCTTATTCTAATAAATGTCAAATAGATGAAGTGTAGTA
1 AGGTTGAAAAAACATTATTCTAATAAATGTAAAATAAAAGAAGTATAGTA
7152799 AGGTTG-AAAAACATTATTCTAATAAATGTAAAATAAAAGAAGTATAGT
1 AGGTTGAAAAAACATTATTCTAATAAATGTAAAATAAAAGAAGTATAGT
7152847 TCTATATTGA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
49 37 0.86
50 6 0.14
ACGTcount: A:0.48, C:0.06, G:0.16, T:0.30
Consensus pattern (50 bp):
AGGTTGAAAAAACATTATTCTAATAAATGTAAAATAAAAGAAGTATAGTA
Done.