Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53248092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1300000 characters in sequence are not A, C, G, or T
File 28 of 175
Found at i:7341514 original size:30 final size:30
Alignment explanation
Indices: 7341478--7341541 Score: 128
Period size: 30 Copynumber: 2.1 Consensus size: 30
7341468 ATAGTGGCTA
7341478 AAATGATAAAAATATGTAACGATGATATCT
1 AAATGATAAAAATATGTAACGATGATATCT
7341508 AAATGATAAAAATATGTAACGATGATATCT
1 AAATGATAAAAATATGTAACGATGATATCT
7341538 AAAT
1 AAAT
7341542 TACAAACTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.52, C:0.06, G:0.12, T:0.30
Consensus pattern (30 bp):
AAATGATAAAAATATGTAACGATGATATCT
Found at i:7342686 original size:18 final size:19
Alignment explanation
Indices: 7342639--7342691 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 19
7342629 ATCTATAAGT
7342639 ATAATTTTATTTTAATGTG
1 ATAATTTTATTTTAATGTG
*
7342658 ATAATAATTATTTT-AT-TG
1 ATAAT-TTTATTTTAATGTG
*
7342676 ATAATGTTTATATTAA
1 ATAAT-TTTATTTTAA
7342692 ATCTTGAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 13 0.46
19 8 0.29
20 7 0.25
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.55
Consensus pattern (19 bp):
ATAATTTTATTTTAATGTG
Found at i:7345510 original size:22 final size:22
Alignment explanation
Indices: 7345482--7345523 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
7345472 TATGAAAGAT
*
7345482 AGTCAGG-TGTTAGTTAGTTAGC
1 AGTCAGGCGGTTAG-TAGTTAGC
7345504 AGTCAGGCGGTTAGTAGTTA
1 AGTCAGGCGGTTAGTAGTTA
7345524 TTCTGTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.24, C:0.10, G:0.33, T:0.33
Consensus pattern (22 bp):
AGTCAGGCGGTTAGTAGTTAGC
Found at i:7349545 original size:19 final size:20
Alignment explanation
Indices: 7349523--7349562 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
7349513 AAATCTGATT
*
7349523 AATTAGTTAATT-AATTTAA
1 AATTAATTAATTAAATTTAA
7349542 AATTAATTAATTAAATTTAA
1 AATTAATTAATTAAATTTAA
7349562 A
1 A
7349563 GTCCTTTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (20 bp):
AATTAATTAATTAAATTTAA
Found at i:7350354 original size:18 final size:17
Alignment explanation
Indices: 7350328--7350362 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7350318 TTAATCTTAA
*
7350328 ATTATTATTATAAAAATG
1 ATTAATATTA-AAAAATG
7350346 ATTAATATTAAAAAATG
1 ATTAATATTAAAAAATG
7350363 TCTATCAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (17 bp):
ATTAATATTAAAAAATG
Found at i:7350919 original size:35 final size:35
Alignment explanation
Indices: 7350880--7351008 Score: 99
Period size: 35 Copynumber: 3.7 Consensus size: 35
7350870 TACAAGAACT
*
7350880 TTTTTTTAAAACAC-GATAA-TTTTGAAACACAATA
1 TTTTTTGAAAACACAGA-AATTTTTGAAACACAATA
*
7350914 TTTTTTGAAGACACAGAAATTTTTGAAACACAGGA-A
1 TTTTTTGAAAACACAGAAATTTTTGAAACACA--ATA
* *
7350950 TTTTTTG-AAACACGAAAAATTTTTAAAAACACAA-A
1 TTTTTTGAAAACAC-AGAAATTTTT-GAAACACAATA
** *
7350985 AATTTTG-AAACACGAGAATTTTTT
1 TTTTTTGAAAACAC-AGAAATTTTT
7351009 TTAAAAGGAC
Statistics
Matches: 80, Mismatches: 9, Indels: 11
0.80 0.09 0.11
Matches are distributed among these distances:
34 14 0.17
35 41 0.51
36 17 0.21
37 8 0.10
ACGTcount: A:0.44, C:0.11, G:0.10, T:0.35
Consensus pattern (35 bp):
TTTTTTGAAAACACAGAAATTTTTGAAACACAATA
Found at i:7350936 original size:18 final size:17
Alignment explanation
Indices: 7350882--7351007 Score: 100
Period size: 18 Copynumber: 7.3 Consensus size: 17
7350872 CAAGAACTTT
*
7350882 TTTTTAAAACAC-GATAA
1 TTTTTGAAACACAGA-AA
*
7350899 -TTTTGAAACACA-ATAT
1 TTTTTGAAACACAGA-AA
7350915 TTTTTGAAGACACAGAAA
1 TTTTTGAA-ACACAGAAA
*
7350933 TTTTTGAAACACAGGAAT
1 TTTTTGAAACACA-GAAA
*
7350951 TTTTTGAAACACGAAAAA
1 TTTTTGAAACAC-AGAAA
*
7350969 TTTTTAAAAACACA-AAA
1 TTTTT-GAAACACAGAAA
*
7350986 ATTTTGAAACAC-GAGAA
1 TTTTTGAAACACAGA-AA
7351003 TTTTT
1 TTTTT
7351008 TTTAAAAGGA
Statistics
Matches: 90, Mismatches: 10, Indels: 18
0.76 0.08 0.15
Matches are distributed among these distances:
16 20 0.22
17 25 0.28
18 37 0.41
19 8 0.09
ACGTcount: A:0.45, C:0.11, G:0.10, T:0.33
Consensus pattern (17 bp):
TTTTTGAAACACAGAAA
Found at i:7351535 original size:7 final size:7
Alignment explanation
Indices: 7351525--7351573 Score: 50
Period size: 7 Copynumber: 7.3 Consensus size: 7
7351515 TTTTTCTTCC
7351525 CTTTTTT
1 CTTTTTT
*
7351532 C-TTTAT
1 CTTTTTT
*
7351538 -TTTTTC
1 CTTTTTT
7351544 CTTTTCTT
1 CTTTT-TT
7351552 CTTTTTT
1 CTTTTTT
7351559 C-TTTTT
1 CTTTTTT
7351565 CTTTTTT
1 CTTTTTT
7351572 CT
1 CT
7351574 GTTGGGCTGT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
6 13 0.38
7 15 0.44
8 6 0.18
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (7 bp):
CTTTTTT
Found at i:7351542 original size:13 final size:13
Alignment explanation
Indices: 7351505--7351573 Score: 56
Period size: 13 Copynumber: 5.5 Consensus size: 13
7351495 GGGCCCCTTC
7351505 TTTT-TTTTTC-T
1 TTTTCTTTTTCTT
**
7351516 TTTTC-TTCCCTT
1 TTTTCTTTTTCTT
*
7351528 TTTTCTTTAT-TT
1 TTTTCTTTTTCTT
*
7351540 TTTCCTTTTCTTCTT
1 TTTTC-TTT-TTCTT
7351555 TTTTCTTTTTCTT
1 TTTTCTTTTTCTT
7351568 TTTTCT
1 TTTTCT
7351574 GTTGGGCTGT
Statistics
Matches: 45, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
11 7 0.16
12 12 0.27
13 16 0.36
14 4 0.09
15 6 0.13
ACGTcount: A:0.01, C:0.19, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTCTTTTTCTT
Found at i:7351548 original size:17 final size:17
Alignment explanation
Indices: 7351528--7351568 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
7351518 TTCTTCCCTT
7351528 TTTTCTTTATTTTTTCC
1 TTTTCTTTATTTTTTCC
* *
7351545 TTTTC-TTCTTTTTTCT
1 TTTTCTTTATTTTTTCC
7351561 TTTTCTTT
1 TTTTCTTT
7351569 TTTCTGTTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 14 0.67
17 7 0.33
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.80
Consensus pattern (17 bp):
TTTTCTTTATTTTTTCC
Found at i:7351548 original size:29 final size:26
Alignment explanation
Indices: 7351502--7351569 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 26
7351492 CTTGGGCCCC
*
7351502 TTCTTTTTTTTTCTTTTTCTTCCCTTTT
1 TTCTTTTTTTTTCCTTTTCTT--CTTTT
7351530 TTCTTTATTTTTTCCTTTTCTTCTTTT
1 TTCTTT-TTTTTTCCTTTTCTTCTTTT
7351557 TTCTTTTTCTTTT
1 TTCTTTTT-TTTT
7351570 TTCTGTTGGG
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
26 2 0.05
27 15 0.41
28 6 0.16
29 14 0.38
ACGTcount: A:0.01, C:0.19, G:0.00, T:0.79
Consensus pattern (26 bp):
TTCTTTTTTTTTCCTTTTCTTCTTTT
Found at i:7351572 original size:29 final size:28
Alignment explanation
Indices: 7351502--7351562 Score: 90
Period size: 29 Copynumber: 2.2 Consensus size: 28
7351492 CTTGGGCCCC
*
7351502 TTCTTT-TTTTTTCTTTTTCTTCCCTTTT
1 TTCTTTATTTTTTCCTTTTCTT-CCTTTT
7351530 TTCTTTATTTTTTCCTTTTCTT-CTTTT
1 TTCTTTATTTTTTCCTTTTCTTCCTTTT
7351557 TTCTTT
1 TTCTTT
7351563 TTCTTTTTTC
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
27 11 0.35
28 6 0.19
29 14 0.45
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.79
Consensus pattern (28 bp):
TTCTTTATTTTTTCCTTTTCTTCCTTTT
Found at i:7352026 original size:7 final size:7
Alignment explanation
Indices: 7352003--7352070 Score: 50
Period size: 7 Copynumber: 9.7 Consensus size: 7
7351993 TCTTCCCCTC
7352003 CTTTTTT
1 CTTTTTT
7352010 CTTCTTTT
1 CTT-TTTT
7352018 CTTTTTT
1 CTTTTTT
7352025 C-TTTTT
1 CTTTTTT
*
7352031 ATTTTTT
1 CTTTTTT
** *
7352038 C-GGTTG
1 CTTTTTT
7352044 CTTTTTT
1 CTTTTTT
* *
7352051 ATTATTT
1 CTTTTTT
7352058 CTTTTTCT
1 CTTTTT-T
7352066 CTTTT
1 CTTTT
7352071 GCTTTTTGCT
Statistics
Matches: 45, Mismatches: 12, Indels: 7
0.70 0.19 0.11
Matches are distributed among these distances:
6 8 0.18
7 24 0.53
8 13 0.29
ACGTcount: A:0.04, C:0.15, G:0.04, T:0.76
Consensus pattern (7 bp):
CTTTTTT
Found at i:7352030 original size:13 final size:13
Alignment explanation
Indices: 7352003--7352082 Score: 61
Period size: 13 Copynumber: 5.8 Consensus size: 13
7351993 TCTTCCCCTC
7352003 CTTTTTTCTTCTTTT
1 CTTTTTTC-T-TTTT
7352018 CTTTTTTCTTTTT
1 CTTTTTTCTTTTT
* ** *
7352031 ATTTTTTCGGTTG
1 CTTTTTTCTTTTT
*
7352044 CTTTTTTATTATTT
1 CTTTTTTCTT-TTT
*
7352058 CTTTTTCTCTTTTG
1 CTTTTT-TCTTTTT
*
7352072 CTTTTTGCTTT
1 CTTTTTTCTTT
7352083 GATTGTTTGG
Statistics
Matches: 51, Mismatches: 12, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
13 23 0.45
14 17 0.33
15 11 0.22
ACGTcount: A:0.04, C:0.15, G:0.06, T:0.75
Consensus pattern (13 bp):
CTTTTTTCTTTTT
Found at i:7352037 original size:20 final size:20
Alignment explanation
Indices: 7352014--7352070 Score: 53
Period size: 20 Copynumber: 2.8 Consensus size: 20
7352004 TTTTTTCTTC
7352014 TTTTCTTTTTTCTTTTTATT
1 TTTTCTTTTTTCTTTTTATT
** *
7352034 TTTTC-GGTTGCTTTTTTATT
1 TTTTCTTTTTTC-TTTTTATT
*
7352054 ATTTCTTTTTCTCTTTT
1 TTTTCTTTTT-TCTTTT
7352071 GCTTTTTGCT
Statistics
Matches: 27, Mismatches: 7, Indels: 5
0.69 0.18 0.13
Matches are distributed among these distances:
19 3 0.11
20 17 0.63
21 6 0.22
22 1 0.04
ACGTcount: A:0.05, C:0.12, G:0.05, T:0.77
Consensus pattern (20 bp):
TTTTCTTTTTTCTTTTTATT
Found at i:7352459 original size:30 final size:29
Alignment explanation
Indices: 7352425--7352492 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 29
7352415 GGTAAAAGCA
*
7352425 TAATTTTAGTAAAAA-TATGGGGCCAAAATG
1 TAATTTTAG-AAAAATTA-GAGGCCAAAATG
* *
7352455 TAATTTCTAGAAATATTAGAGGCCCAAATG
1 TAATTT-TAGAAAAATTAGAGGCCAAAATG
7352485 TAATTTTA
1 TAATTTTA
7352493 ATTTTTTCTG
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
29 2 0.06
30 26 0.79
31 5 0.15
ACGTcount: A:0.41, C:0.09, G:0.16, T:0.34
Consensus pattern (29 bp):
TAATTTTAGAAAAATTAGAGGCCAAAATG
Found at i:7353110 original size:75 final size:76
Alignment explanation
Indices: 7352906--7353677 Score: 872
Period size: 75 Copynumber: 10.1 Consensus size: 76
7352896 AAAAACACAT
* * * *
7352906 AAAATTAAAAAAATATCTCGGCATGTGACCCGAGGCTCAACTCACCTCTAGTAATATGAGTTGAT
1 AAAATT-AAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
7352971 TTTTTGAAAAAATA
64 TTTTTG-AAAAATA
* * * * * *
7352985 AAAATTGAAAA-ATACCTCGACGTGCGGCCCAAGGCTCAACTCACCTCTCGCATTATGAGTTGAT
1 AAAATT-AAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* *
7353049 ATTTGGAAAGA-A
65 -TTTTGAAAAATA
* *
7353061 GAAATT-AAAGATACCTCGGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 AAAATTAAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--
* *
7353125 TTTTTTGAGAAAGA
64 -TTTTTGAAAAATA
* * *
7353139 AAAATTAAAAAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACATCTCGCAATATGAGTTGA
1 AAAATT--AAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
7353204 TTTTTGTAAACA-A
64 TTTTTG-AAAAATA
* *
7353217 AAATTTAAAAGAAATACCTCGGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAAATTAAAAG--ATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
7353282 --TTT-AAAAA-A
64 TTTTTGAAAAATA
* * * *
7353291 AAAATTGAAA-ATACCTCAGC--GTGACTCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATC
1 AAAATTAAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--
*
7353353 TTTTTGAAAAACA
64 TTTTTGAAAAATA
* * * * * *
7353366 AAAATTAAAAAAATACCCCGGCGTGTG-TCTGAGGCTCAACTCATCTCTCGCAATATGAGTTGAT
1 AAAATT-AAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
7353430 TTTTGAAAAACA
65 TTTTGAAAAATA
* * * *
7353442 GAAATT-AAAGATACCTCGGTATGTGACCCGAGGCTCGACTCACCTATCGCAATATGAGTTGATT
1 AAAATTAAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
7353506 TTTGAAAAATA
66 TTTGAAAAATA
* *
7353517 GAAATT-AAAGATACCTCGGTATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 AAAATTAAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
7353581 TTTGAAAAATA
66 TTTGAAAAATA
* * * * *
7353592 AAAATT-AAAGATACCTCGGTATGTGATCAGGGGCTCAACTCACCTCTTGCAATATGAGTTGATT
1 AAAATTAAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
7353656 TTTGAAAAATA
66 TTTGAAAAATA
*
7353667 GAAATTGAAAA
1 AAAATT-AAAA
7353678 ATATAATTCT
Statistics
Matches: 599, Mismatches: 69, Indels: 52
0.83 0.10 0.07
Matches are distributed among these distances:
69 37 0.06
71 9 0.02
73 3 0.01
74 36 0.06
75 243 0.41
76 34 0.06
77 23 0.04
78 146 0.24
79 16 0.03
81 52 0.09
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.27
Consensus pattern (76 bp):
AAAATTAAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
TTTGAAAAATA
Found at i:7354557 original size:8 final size:8
Alignment explanation
Indices: 7354546--7354575 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
7354536 AATTCTTCTT
*
7354546 TTTTTTTG
1 TTTTTTTA
7354554 TTTTTTTA
1 TTTTTTTA
7354562 TTTTTTTA
1 TTTTTTTA
7354570 TTTTTT
1 TTTTTT
7354576 ATGTGTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.07, C:0.00, G:0.03, T:0.90
Consensus pattern (8 bp):
TTTTTTTA
Found at i:7358166 original size:24 final size:25
Alignment explanation
Indices: 7358130--7358178 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
7358120 ATATACAGAC
*
7358130 GCATATTTTATATATA-ATATACAT
1 GCATATTTAATATATATATATACAT
*
7358154 GCATATTTAATATATATGTATACAT
1 GCATATTTAATATATATATATACAT
7358179 ATATTAAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 15 0.68
25 7 0.32
ACGTcount: A:0.41, C:0.08, G:0.06, T:0.45
Consensus pattern (25 bp):
GCATATTTAATATATATATATACAT
Found at i:7362423 original size:16 final size:16
Alignment explanation
Indices: 7362399--7362518 Score: 59
Period size: 16 Copynumber: 7.2 Consensus size: 16
7362389 ACAAGAATTT
* *
7362399 TTTTAAAACACGATAA
1 TTTTGAAACACGAAAA
*
7362415 TTTTGAAACAC-AATAGT
1 TTTTGAAACACGAA-A-A
* * *
7362432 TTTTG-AAGACTAAAT
1 TTTTGAAACACGAAAA
7362447 TTTTGAAACAC-AAGAA
1 TTTTGAAACACGAA-AA
*
7362463 TTTTTTGAAACATGAAAAA
1 --TTTTGAAACACG-AAAA
7362482 TTTTTGAAAACAC-AAAA
1 -TTTTG-AAACACGAAAA
* *
7362499 TTTTGAAACATGAGAA
1 TTTTGAAACACGAAAA
7362515 TTTT
1 TTTT
7362519 TTTAAAAGGA
Statistics
Matches: 83, Mismatches: 10, Indels: 22
0.72 0.09 0.19
Matches are distributed among these distances:
15 14 0.17
16 33 0.40
17 11 0.13
18 16 0.19
19 7 0.08
20 2 0.02
ACGTcount: A:0.45, C:0.09, G:0.11, T:0.35
Consensus pattern (16 bp):
TTTTGAAACACGAAAA
Found at i:7362469 original size:18 final size:17
Alignment explanation
Indices: 7362415--7362502 Score: 81
Period size: 18 Copynumber: 5.1 Consensus size: 17
7362405 AACACGATAA
* *
7362415 TTTTGAAACACAATAGT
1 TTTTGAAACACAAAATT
* *
7362432 TTTTG-AAGACTAAA-T
1 TTTTGAAACACAAAATT
7362447 TTTTGAAACACAAGAATT
1 TTTTGAAACACAA-AATT
* *
7362465 TTTTGAAACATGAAAAAT
1 TTTTGAAACA-CAAAATT
7362483 TTTTGAAAACACAAAATT
1 TTTTG-AAACACAAAATT
7362501 TT
1 TT
7362503 GAAACATGAG
Statistics
Matches: 57, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
15 6 0.11
16 11 0.19
17 7 0.12
18 26 0.46
19 7 0.12
ACGTcount: A:0.44, C:0.09, G:0.10, T:0.36
Consensus pattern (17 bp):
TTTTGAAACACAAAATT
Found at i:7362508 original size:34 final size:36
Alignment explanation
Indices: 7362443--7362525 Score: 109
Period size: 34 Copynumber: 2.4 Consensus size: 36
7362433 TTTGAAGACT
7362443 AAATTTTTG-AAACACAAGAATTTTTTGAAACATGAA
1 AAATTTTTGAAAACACAAGAA-TTTTTGAAACATGAA
*
7362479 AAATTTTTGAAAACACAA-AA-TTTTGAAACATGAG
1 AAATTTTTGAAAACACAAGAATTTTTGAAACATGAA
* *
7362513 AATTTTTTTAAAA
1 AAATTTTTGAAAA
7362526 GGACGTATCG
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
34 24 0.56
36 11 0.26
37 8 0.19
ACGTcount: A:0.48, C:0.07, G:0.10, T:0.35
Consensus pattern (36 bp):
AAATTTTTGAAAACACAAGAATTTTTGAAACATGAA
Found at i:7362519 original size:17 final size:17
Alignment explanation
Indices: 7362444--7362519 Score: 66
Period size: 18 Copynumber: 4.4 Consensus size: 17
7362434 TTGAAGACTA
**
7362444 AATTTTTGAAACACAAG
1 AATTTTTGAAACATGAG
*
7362461 AATTTTTTGAAACATGAAA
1 AA-TTTTTGAAACATG-AG
*
7362480 AATTTTTGAAAACA-CA-
1 AATTTTTG-AAACATGAG
*
7362496 AAATTTTGAAACATGAG
1 AATTTTTGAAACATGAG
7362513 AATTTTT
1 AATTTTT
7362520 TTAAAAGGAC
Statistics
Matches: 47, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
15 5 0.11
16 8 0.17
17 9 0.19
18 17 0.36
19 8 0.17
ACGTcount: A:0.46, C:0.08, G:0.11, T:0.36
Consensus pattern (17 bp):
AATTTTTGAAACATGAG
Found at i:7363037 original size:9 final size:9
Alignment explanation
Indices: 7363023--7363081 Score: 66
Period size: 9 Copynumber: 6.6 Consensus size: 9
7363013 CCTTCTTCTT
7363023 TTTTTTTTC
1 TTTTTTTTC
7363032 TTTTTTTTC
1 TTTTTTTTC
*
7363041 CTTTTTTTC
1 TTTTTTTTC
*
7363050 TTTCTTTT-
1 TTTTTTTTC
**
7363058 TTCCTTTTC
1 TTTTTTTTC
7363067 TTCTTTTTTC
1 TT-TTTTTTC
7363077 TTTTT
1 TTTTT
7363082 CTTTTTTCTG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
8 7 0.17
9 28 0.67
10 7 0.17
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:7363047 original size:20 final size:19
Alignment explanation
Indices: 7363022--7363088 Score: 73
Period size: 20 Copynumber: 3.3 Consensus size: 19
7363012 CCCTTCTTCT
7363022 TTTTTTTTTCTTTTTTTTCC
1 TTTTTTTTT-TTTTTTTTCC
*
7363042 TTTTTTTCTTTCTTTTTTCC
1 TTTTTTT-TTTTTTTTTTCC
7363062 TTTTCTTCTTTTTTCTTTTT-C
1 TTTT-TT-TTTTTT-TTTTTCC
7363083 TTTTTT
1 TTTTTT
7363089 CTGCTGGGCT
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
20 22 0.54
21 13 0.32
22 6 0.15
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (19 bp):
TTTTTTTTTTTTTTTTTCC
Found at i:7363057 original size:29 final size:28
Alignment explanation
Indices: 7363018--7363090 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 28
7363008 GGGCCCCTTC
* *
7363018 TTCTTTTTTTTTTCTTTTTTTTCCTTTTT
1 TTCTTTCTTTTTTCTTTTTCTT-CTTTTT
*
7363047 TTCTTTCTTTTTTCCTTTTCTTCTTTTT
1 TTCTTTCTTTTTTCTTTTTCTTCTTTTT
*
7363075 TCTTTTTCTTTTTTCT
1 T-TCTTTCTTTTTTCT
7363091 GCTGGGCTGT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
28 7 0.18
29 31 0.82
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (28 bp):
TTCTTTCTTTTTTCTTTTTCTTCTTTTT
Found at i:7363089 original size:13 final size:13
Alignment explanation
Indices: 7363018--7363090 Score: 67
Period size: 13 Copynumber: 5.3 Consensus size: 13
7363008 GGGCCCCTTC
*
7363018 TTCTTTTTTTTTT
1 TTCTTTTTCTTTT
*
7363031 CTTTTTTTTCCTTTT
1 -TTCTTTTT-CTTTT
*
7363046 TT-TCTTTCTTTT
1 TTCTTTTTCTTTT
7363058 TTCCTTTTCTTCTTTT
1 TT-C-TTT-TTCTTTT
7363074 TTCTTTTTCTTTT
1 TTCTTTTTCTTTT
7363087 TTCT
1 TTCT
7363091 GCTGGGCTGT
Statistics
Matches: 50, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
12 7 0.14
13 15 0.30
14 12 0.24
15 7 0.14
16 9 0.18
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (13 bp):
TTCTTTTTCTTTT
Found at i:7363090 original size:20 final size:19
Alignment explanation
Indices: 7363018--7363090 Score: 74
Period size: 21 Copynumber: 3.6 Consensus size: 19
7363008 GGGCCCCTTC
*
7363018 TTCTTTTTTTTTTCTTTTTT
1 TTCTTTTTTCTTT-TTTTTT
*
7363038 TTCCTTTTTTTCTTTCTTTTT
1 TT-C-TTTTTTCTTTTTTTTT
*
7363059 TCCTTTTCTTCTTTTTTCTTT
1 TTCTTTT-TTCTTTTTT-TTT
7363080 TTCTTTTTTCT
1 TTCTTTTTTCT
7363091 GCTGGGCTGT
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
19 4 0.09
20 15 0.34
21 16 0.36
22 9 0.20
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (19 bp):
TTCTTTTTTCTTTTTTTTT
Found at i:7363411 original size:17 final size:17
Alignment explanation
Indices: 7363389--7363422 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
7363379 TCTTTCCCCC
7363389 TTTTTCTTCC-TTCTTCT
1 TTTTTC-TCCTTTCTTCT
7363406 TTTTTCTCCTTTCTTCT
1 TTTTTCTCCTTTCTTCT
7363423 CTTCTCATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.19
17 13 0.81
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTCTCCTTTCTTCT
Found at i:7363519 original size:13 final size:13
Alignment explanation
Indices: 7363501--7363571 Score: 61
Period size: 13 Copynumber: 5.2 Consensus size: 13
7363491 CTTTGTCTTC
7363501 TTTTCTTTTTTCT
1 TTTTCTTTTTTCT
7363514 TTTTCTTTTTTCGGT
1 TTTTCTTTTTTC--T
* * *
7363529 TGTTGTTTTTTTT
1 TTTTCTTTTTTCT
7363542 TATTTCTTTTTCTCT
1 T-TTTCTTTTT-TCT
* *
7363557 TTTGCTTTTTGCT
1 TTTTCTTTTTTCT
7363570 TT
1 TT
7363572 GCTTGTTTGG
Statistics
Matches: 46, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
13 18 0.39
14 15 0.33
15 13 0.28
ACGTcount: A:0.01, C:0.13, G:0.08, T:0.77
Consensus pattern (13 bp):
TTTTCTTTTTTCT
Found at i:7364270 original size:53 final size:53
Alignment explanation
Indices: 7364190--7364296 Score: 180
Period size: 53 Copynumber: 2.0 Consensus size: 53
7364180 AAACACGAAA
*
7364190 TTCAGACCGAACAAAATTTAGTGATTACAATATTAATATAATTTTTATATGTC
1 TTCAGACCGAACAAAATTCAGTGATTACAATATTAATATAATTTTTATATGTC
*
7364243 TTCAGACC-AGACAAAATTCAGTGATTACAATATTAATATAATTTTTGTATGTC
1 TTCAGACCGA-ACAAAATTCAGTGATTACAATATTAATATAATTTTTATATGTC
7364296 T
1 T
7364297 ATGAGATATA
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
52 1 0.02
53 50 0.98
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.39
Consensus pattern (53 bp):
TTCAGACCGAACAAAATTCAGTGATTACAATATTAATATAATTTTTATATGTC
Found at i:7367394 original size:34 final size:33
Alignment explanation
Indices: 7367351--7367433 Score: 87
Period size: 33 Copynumber: 2.5 Consensus size: 33
7367341 CACACACATG
* **
7367351 AAAAGATAATATATTATATATAATTTTACATTTT
1 AAAAAATAATATATTATATA-AATTTTACATGCT
*
7367385 AAAAAATAAT-TCATAATATAAATTTTACATGCT
1 AAAAAATAATAT-ATTATATAAATTTTACATGCT
*
7367418 AAGAAATAATAATATT
1 AAAAAATAAT-ATATT
7367434 TAGAATAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
33 21 0.52
34 18 0.45
35 1 0.03
ACGTcount: A:0.52, C:0.05, G:0.04, T:0.40
Consensus pattern (33 bp):
AAAAAATAATATATTATATAAATTTTACATGCT
Found at i:7382161 original size:12 final size:12
Alignment explanation
Indices: 7382144--7382168 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7382134 GAGGCAGGAA
7382144 CCCAACACAAGG
1 CCCAACACAAGG
7382156 CCCAACACAAGG
1 CCCAACACAAGG
7382168 C
1 C
7382169 AACACAGAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.44, G:0.16, T:0.00
Consensus pattern (12 bp):
CCCAACACAAGG
Found at i:7389055 original size:86 final size:87
Alignment explanation
Indices: 7388940--7389511 Score: 568
Period size: 86 Copynumber: 6.6 Consensus size: 87
7388930 ATAGATTGAA
* * * * * *
7388940 GAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATA-CAGATC-TATCTT
1 GAAGAAA-CAGATCTTGTCTTCCTATATTGGTGGGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
* *
7389003 CCTATATTGGTGGTGAAGTAGATC
65 CATATATTGG-CGTGAAGTAGATC
*
7389027 GAAGAAACAGATCTTGTCTTCCCATATTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
1 GAAGAAACAGATCTTGTCTTCCTATATTGGTGG-GAAGTAGATCGAAGAAAGCAGATCTTGTCTT
*
7389092 CATGTATTGGCGTGAAGTAGATC
65 CATATATTGGCGTGAAGTAGATC
* * * *
7389115 GAAGATATCAGATCCTATCTTCCTATATT-G-GCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
1 GAAGA-AACAGATCTTGTCTTCCTATATTGGTGGGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
*
7389178 CATGTATTGGCGTGAAGTAGATC
65 CATATATTGGCGTGAAGTAGATC
* * * * * *
7389201 GAAGATATCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAG-ATGCAGATCTTGTCTT
1 GAAGA-AACAGATCTTGTCTTCCTATATTGGTGGGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
** * *
7389265 CCCATATTGGTGGCGAAGTAGATC
65 CATATATTGG-CGTGAAGTAGATC
* *
7389289 CAAGAAAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATC-AAGAAAGCAGATCTTGTCT
1 GAAGAAA-CAGATCTTGTCTTCCTATATTGGTGG-GAAGTAGATCGAAGAAAGCAGATCTTGTCT
* *
7389353 TCATGTATTGGCGTGAAGTGGATC
64 TCATATATTGGCGTGAAGTAGATC
** * * * * * * *
7389377 GAAGATGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGACCGACG-ATGCAGAT-TTGTCTTC
1 GAAGAAACAGATCTTGTCTTCCTATATTGGTGGGAAGTAGATCGAAGAAAGCAGATCTTGTCTTC
** * * *
7389440 CCATACTGGTAG-GAAGTGGATC
66 ATATATTGG-CGTGAAGTAGATC
* * * *
7389462 GAAGAAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGAAGATCGAAGAA
1 GAAGAAACAGATCTTGTCTTCCTATATTGGTGG-GAAGTAGATCGAAGAA
7389512 GTAGATCGAC
Statistics
Matches: 407, Mismatches: 64, Indels: 28
0.82 0.13 0.06
Matches are distributed among these distances:
85 50 0.12
86 130 0.32
87 73 0.18
88 91 0.22
89 63 0.15
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (87 bp):
GAAGAAACAGATCTTGTCTTCCTATATTGGTGGGAAGTAGATCGAAGAAAGCAGATCTTGTCTTC
ATATATTGGCGTGAAGTAGATC
Found at i:7389512 original size:44 final size:44
Alignment explanation
Indices: 7388940--7389518 Score: 565
Period size: 44 Copynumber: 13.3 Consensus size: 44
7388930 ATAGATTGAA
* * *
7388940 GAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATC
1 GAAG-AAGCAGATCTTGTCTTCCTATATTGGTGGTGAAGTAGATC
*
7388984 GAAGATA-CAGATC-TATCTTCCTATATTGGTGGTGAAGTAGATC
1 GAAGA-AGCAGATCTTGTCTTCCTATATTGGTGGTGAAGTAGATC
* *
7389027 GAAGAAACAGATCTTGTCTTCCCATATTGGTGGTGAAGTAGATC
1 GAAGAAGCAGATCTTGTCTTCCTATATTGGTGGTGAAGTAGATC
* * *
7389071 GAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATC
1 GAAG-AAGCAGATCTTGTCTTCCTATATTGGTGGTGAAGTAGATC
* * * *
7389115 GAAGATATCAGATCCTATCTTCCTATA-T--TGGCGAAGTAGATC
1 GAAGA-AGCAGATCTTGTCTTCCTATATTGGTGGTGAAGTAGATC
* * *
7389157 GAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATC
1 GAAG-AAGCAGATCTTGTCTTCCTATATTGGTGGTGAAGTAGATC
* * * * *
7389201 GAAGATATCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATC
1 GAAGA-AGCAGATCTTGTCTTCCTATATTGGTGGTGAAGTAGATC
* * *
7389245 GAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATC
1 GAAGAAGCAGATCTTGTCTTCCTATATTGGTGGTGAAGTAGATC
* * *
7389289 CAAGAAAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATC
1 GAAG-AAGCAGATCTTGTCTTCCTATATTGGTGGTGAAGTAGATC
* * * *
7389334 -AAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTGGATC
1 GAAG-AAGCAGATCTTGTCTTCCTATATTGGTGGTGAAGTAGATC
* * * * * *
7389377 GAAGATGCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGACC
1 GAAGAAGCAGATCTTGTCTTCCTATATTGGTGGTGAAGTAGATC
* * * * * *
7389420 GACGATGCAGAT-TTGTCTTCCCATACTGGTAG-GAAGTGGATC
1 GAAGAAGCAGATCTTGTCTTCCTATATTGGTGGTGAAGTAGATC
* * *
7389462 GAAGAAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGAAGATC
1 GAAGAAGCAGATCTTGTCTTCCTATATTGGTGGTGAAGTAGATC
*
7389506 GAAGAAGTAGATC
1 GAAGAAGCAGATC
7389519 GACGATGGCG
Statistics
Matches: 450, Mismatches: 66, Indels: 38
0.81 0.12 0.07
Matches are distributed among these distances:
42 80 0.18
43 127 0.28
44 181 0.40
45 62 0.14
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (44 bp):
GAAGAAGCAGATCTTGTCTTCCTATATTGGTGGTGAAGTAGATC
Found at i:7398068 original size:27 final size:28
Alignment explanation
Indices: 7398032--7398086 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
7398022 GAATAGAAAC
**
7398032 GAAAACAGAGCAGGGAAAGAAA-GAAAAA
1 GAAAACAGAG-AAAGAAAGAAAGGAAAAA
7398060 GAAAA-AGAGAAAGAAAGAAAGGAAAAA
1 GAAAACAGAGAAAGAAAGAAAGGAAAAA
7398087 CTAGGTTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 9 0.38
27 10 0.42
28 5 0.21
ACGTcount: A:0.69, C:0.04, G:0.27, T:0.00
Consensus pattern (28 bp):
GAAAACAGAGAAAGAAAGAAAGGAAAAA
Found at i:7417009 original size:44 final size:44
Alignment explanation
Indices: 7416853--7417426 Score: 584
Period size: 43 Copynumber: 13.3 Consensus size: 44
7416843 ATAGATTGAA
* * * *
7416853 GAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
1 GAAGAAAGCAGATCTTGTCTTCCTATATTGGTGGGAAGTAGATC
*
7416897 GAAG-ATGCAGATCTTGTCTTCC-ATATTGGT-GGAAGTAGATC
1 GAAGAAAGCAGATCTTGTCTTCCTATATTGGTGGGAAGTAGATC
*
7416938 GAAG-AA-CAGATCTTGTCTTCCCATATTGGTGGGAAGTAGATC
1 GAAGAAAGCAGATCTTGTCTTCCTATATTGGTGGGAAGTAGATC
* * * *
7416980 GAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
1 GAAGAAAGCAGATCTTGTCTTCCTATATTGGTGGGAAGTAGATC
* * * * *
7417024 GAAGATATCAGATCCTATCTTCCTATATT-G-GCGAAGTAGATC
1 GAAGAAAGCAGATCTTGTCTTCCTATATTGGTGGGAAGTAGATC
* * * *
7417066 GAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
1 GAAGAAAGCAGATCTTGTCTTCCTATATTGGTGGGAAGTAGATC
* * * * * *
7417110 GAAGATATCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATC
1 GAAGAAAGCAGATCTTGTCTTCCTATATTGGTGGGAAGTAGATC
* *
7417154 GAAG-ATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATC
1 GAAGAAAGCAGATCTTGTCTTCCTATATTGGTGG-GAAGTAGATC
7417198 -AAGAAAGCAGATCTTGTCTTCC-ATATTGGTGGCGAAGTAGATC
1 GAAGAAAGCAGATCTTGTCTTCCTATATTGGTGG-GAAGTAGATC
* * * *
7417241 -AAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGT-GATC
1 GAAGAAAGCAGATCTTGTCTTCCTATATTGGTGGGAAGTAGATC
* * * * * *
7417283 GAAG-ATGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGACC
1 GAAGAAAGCAGATCTTGTCTTCCTATATTGGTGGGAAGTAGATC
* * * * * * *
7417326 GACG-ATGCAGATTTTGTCTTCCCATACTGGTAGGAAGTGGATC
1 GAAGAAAGCAGATCTTGTCTTCCTATATTGGTGGGAAGTAGATC
* * *
7417369 GAAG-AAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGAAGATC
1 GAAGAAAGCAGATCTTGTCTTCCTATATTGGTGG-GAAGTAGATC
*
7417413 GAAGAAAGTAGATC
1 GAAGAAAGCAGATC
7417427 GACGATGGCG
Statistics
Matches: 446, Mismatches: 71, Indels: 25
0.82 0.13 0.05
Matches are distributed among these distances:
40 15 0.03
41 23 0.05
42 85 0.19
43 163 0.37
44 152 0.34
45 8 0.02
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (44 bp):
GAAGAAAGCAGATCTTGTCTTCCTATATTGGTGGGAAGTAGATC
Found at i:7417139 original size:130 final size:127
Alignment explanation
Indices: 7416853--7417389 Score: 599
Period size: 130 Copynumber: 4.2 Consensus size: 127
7416843 ATAGATTGAA
* *
7416853 GAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATGCAGATCTTGTCTTC
1 GAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATGCAGATCCTATCTTC
* * *
7416918 C-ATATTGGTGGAAGTAGATCGAAG-AA-CAGATCTTGTCTTCCCATATTGGTGGGAAGTAGATC
66 CTATATTGG-CGAAGTAGATCGAAGAAAGCAGATCTTGTCTT--CATATTGGCGCGAAGTAGATC
*
7416980 GAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATATCAGATCCTATCTT
1 GAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAT-GCAGATCCTATCTT
*
7417045 CCTATATTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
65 CCTATATTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCA--TATTGGCGCGAAGTAGATC
* * * * * * * * * *
7417110 GAAGATATCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAGATGCAGATCTTGTCTT
1 GAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATGCAGATCCTATCTT
* *
7417174 CCCATATTGGTGGCGAAGTAGATC-AAGAAAGCAGATCTTGTCTTCCATATTGGTGGCGAAGTAG
65 CCTATA-T--TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT-CATATTGG-CGCGAAGTAG
7417238 ATC
125 ATC
7417241 -AAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGT-GATCGAAGATGCAGATCCTATCTTC
1 GAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATGCAGATCCTATCTTC
* * * * * * * * *
7417304 CTATATTGGTAGGAAGTGGACCGACG-ATGCAGATTTTGTCTTCCCATACTGGTAG-GAAGTGGA
66 CTATATTGG--CGAAGTAGATCGAAGAAAGCAGATCTTGTCTT--CATATTGG-CGCGAAGTAGA
7417367 TC
126 TC
7417369 GAAG-AAGCAGATCTTGTCTTC
1 GAAGAAAGCAGATCTTGTCTTC
7417390 CCATACTGGT
Statistics
Matches: 353, Mismatches: 39, Indels: 35
0.83 0.09 0.08
Matches are distributed among these distances:
126 3 0.01
127 50 0.14
128 78 0.22
129 68 0.19
130 106 0.30
131 32 0.09
132 16 0.05
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (127 bp):
GAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATGCAGATCCTATCTTC
CTATATTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATTGGCGCGAAGTAGATC
Found at i:7426844 original size:36 final size:41
Alignment explanation
Indices: 7426773--7426861 Score: 109
Period size: 37 Copynumber: 2.3 Consensus size: 41
7426763 ATATGTGTGG
7426773 AATTGAATTGAATATATTGACTTGAAAAATGG-AAAAGTGA
1 AATTGAATTGAATATATTGACTTGAAAAATGGAAAAAGTGA
* *
7426813 ATTTTGAATTGAAT-TA-TGA-TTG-AAAGT-GAAAAAGTGA
1 A-ATTGAATTGAATATATTGACTTGAAAAATGGAAAAAGTGA
7426850 AATTGAATTGAA
1 AATTGAATTGAA
7426862 ATGTGAATTT
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
36 11 0.25
37 13 0.30
38 3 0.07
39 3 0.07
40 3 0.07
41 11 0.25
ACGTcount: A:0.46, C:0.01, G:0.20, T:0.33
Consensus pattern (41 bp):
AATTGAATTGAATATATTGACTTGAAAAATGGAAAAAGTGA
Found at i:7430158 original size:9 final size:9
Alignment explanation
Indices: 7430146--7430205 Score: 50
Period size: 9 Copynumber: 6.4 Consensus size: 9
7430136 TAGTTATATA
7430146 TTTTTTTAT
1 TTTTTTTAT
7430155 TTTTTTTAT
1 TTTTTTTAT
*
7430164 TTTTTAATAT
1 TTTTT-TTAT
**
7430174 TTTTAAAATAT
1 TTTT--TTTAT
7430185 TTTTTTTA-
1 TTTTTTTAT
*
7430193 CTTTTTTAT
1 TTTTTTTAT
7430202 TTTT
1 TTTT
7430206 AAAATAAATT
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
8 7 0.17
9 19 0.46
10 7 0.17
11 8 0.20
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTTTTTAT
Found at i:7430174 original size:10 final size:9
Alignment explanation
Indices: 7430142--7430205 Score: 51
Period size: 10 Copynumber: 6.9 Consensus size: 9
7430132 ATAATAGTTA
7430142 TATATTTTT
1 TATATTTTT
7430151 T-TATTTTT
1 TATATTTTT
*
7430159 TTTATTTTT
1 TATATTTTT
7430168 TAATATTTTT
1 T-ATATTTTT
*
7430178 AAAATATTTTT
1 --TATATTTTT
*
7430189 TTTACTTTTT
1 TATA-TTTTT
7430199 TAT-TTTT
1 TATATTTT
7430206 AAAATAAATT
Statistics
Matches: 45, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
8 12 0.27
9 11 0.24
10 14 0.31
11 8 0.18
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.77
Consensus pattern (9 bp):
TATATTTTT
Found at i:7430176 original size:17 final size:17
Alignment explanation
Indices: 7430144--7430177 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7430134 AATAGTTATA
* *
7430144 TATTTTTTTATTTTTTT
1 TATTTTTTAATATTTTT
7430161 TATTTTTTAATATTTTT
1 TATTTTTTAATATTTTT
7430178 AAAATATTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (17 bp):
TATTTTTTAATATTTTT
Found at i:7430188 original size:28 final size:27
Alignment explanation
Indices: 7430152--7430211 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 27
7430142 TATATTTTTT
7430152 TATTTTTTTTATTTTTTAATATTTTTAAAA
1 TATTTTTTTTA--TTTT-ATATTTTTAAAA
*
7430182 TATTTTTTTTACTTTTTTATTTTTAAAA
1 TATTTTTTTTA-TTTTATATTTTTAAAA
7430210 TA
1 TA
7430212 AATTTTTGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 13 0.46
29 4 0.14
30 11 0.39
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (27 bp):
TATTTTTTTTATTTTATATTTTTAAAA
Found at i:7430218 original size:30 final size:29
Alignment explanation
Indices: 7430152--7430211 Score: 95
Period size: 30 Copynumber: 2.1 Consensus size: 29
7430142 TATATTTTTT
*
7430152 TATTTTTTTTATTTTTTAATATTTTTAAAA
1 TATTTTTTTTACTTTTT-ATATTTTTAAAA
7430182 TATTTTTTTTACTTTTT-TATTTTTAAAA
1 TATTTTTTTTACTTTTTATATTTTTAAAA
7430210 TA
1 TA
7430212 AATTTTTGGT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 13 0.45
30 16 0.55
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (29 bp):
TATTTTTTTTACTTTTTATATTTTTAAAA
Found at i:7431446 original size:20 final size:20
Alignment explanation
Indices: 7431421--7431460 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7431411 CAGAAAATGA
*
7431421 TTTCTGAAAAATGTTTTACT
1 TTTCTGAAAAATGATTTACT
*
7431441 TTTCTGTAAAATGATTTACT
1 TTTCTGAAAAATGATTTACT
7431461 AGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.30, C:0.10, G:0.10, T:0.50
Consensus pattern (20 bp):
TTTCTGAAAAATGATTTACT
Found at i:7431593 original size:21 final size:20
Alignment explanation
Indices: 7431550--7431593 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
7431540 GAAAAAGTTG
*
7431550 TTTTTACATATATTAAATTA
1 TTTTTACATATATTAAATGA
*
7431570 TTTTTACATATATTGCAATGA
1 TTTTTACATATATT-AAATGA
7431591 TTT
1 TTT
7431594 ATTTATAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.34, C:0.07, G:0.05, T:0.55
Consensus pattern (20 bp):
TTTTTACATATATTAAATGA
Found at i:7432670 original size:15 final size:16
Alignment explanation
Indices: 7432634--7432673 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 16
7432624 TATATATAAG
*
7432634 AACAAATGTTTGAATGA
1 AACAAATGTTTCAA-GA
7432651 AACAAATGTTTCAA-A
1 AACAAATGTTTCAAGA
7432666 AACAAATG
1 AACAAATG
7432674 CCATGCCATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.41
17 13 0.59
ACGTcount: A:0.53, C:0.10, G:0.12, T:0.25
Consensus pattern (16 bp):
AACAAATGTTTCAAGA
Found at i:7434489 original size:14 final size:14
Alignment explanation
Indices: 7434470--7434499 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7434460 AACAAAACTA
7434470 GCAGAGAAGATGAG
1 GCAGAGAAGATGAG
*
7434484 GCAGAGATGATGAG
1 GCAGAGAAGATGAG
7434498 GC
1 GC
7434500 TGCAATCGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.10, G:0.43, T:0.10
Consensus pattern (14 bp):
GCAGAGAAGATGAG
Found at i:7438452 original size:42 final size:42
Alignment explanation
Indices: 7438405--7438504 Score: 110
Period size: 42 Copynumber: 2.4 Consensus size: 42
7438395 GTGTCCTCAC
* * * * * * *
7438405 CCGTGTAACTCACTGAGTAGGGTCACATGGCCGTGTGCTAGG
1 CCGTGTAACTCACTAAGTAGCGCCACACGCCCATGTGCCAGG
* *
7438447 CCGTGTAACTCTCTAAGTTGCGCCACACGCCCATGTGCCAGG
1 CCGTGTAACTCACTAAGTAGCGCCACACGCCCATGTGCCAGG
*
7438489 CCGTGTAACTCTCTAA
1 CCGTGTAACTCACTAA
7438505 ATTGAACCCT
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.20, C:0.30, G:0.26, T:0.24
Consensus pattern (42 bp):
CCGTGTAACTCACTAAGTAGCGCCACACGCCCATGTGCCAGG
Found at i:7439556 original size:13 final size:13
Alignment explanation
Indices: 7439538--7439563 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7439528 ATATAACACC
7439538 ATCAAACTCATAA
1 ATCAAACTCATAA
7439551 ATCAAACTCATAA
1 ATCAAACTCATAA
7439564 GTTAGTATAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.23, G:0.00, T:0.23
Consensus pattern (13 bp):
ATCAAACTCATAA
Found at i:7448410 original size:292 final size:292
Alignment explanation
Indices: 7447886--7448453 Score: 1109
Period size: 292 Copynumber: 1.9 Consensus size: 292
7447876 CTACCAATTA
*
7447886 AATCTTGTATCAACAATGGTGTGATGAGCGTGGATCAAACCCACCAAAATAACCTTTACTCTCCT
1 AATCTTGTATAAACAATGGTGTGATGAGCGTGGATCAAACCCACCAAAATAACCTTTACTCTCCT
7447951 CCATCAAAGTCACATTTTCTAAGAGAAGTGCTAGCTTGCTCAAGAAGGCTAAGGAACTCGCTAGT
66 CCATCAAAGTCACATTTTCTAAGAGAAGTGCTAGCTTGCTCAAGAAGGCTAAGGAACTCGCTAGT
7448016 CTCTTTGAGTTTTCCAGCTCTTGAGTGTTGATTACTAGGATCATTGGCTATGAACTTTAGAGGGA
131 CTCTTTGAGTTTTCCAGCTCTTGAGTGTTGATTACTAGGATCATTGGCTATGAACTTTAGAGGGA
7448081 TTAGCAACCTCTTTCAATTTTTGCACTTCTTATGGTGACATGATTACTCCTAGTTGCTTCCAAAT
196 TTAGCAACCTCTTTCAATTTTTGCACTTCTTATGGTGACATGATTACTCCTAGTTGCTTCCAAAT
7448146 CGTGGCATTCAGATTTTGATTAATTTCTATTT
261 CGTGGCATTCAGATTTTGATTAATTTCTATTT
7448178 AATCTTGTATAAACAATGGTGTGATGAGCGTGGATCAAACCCACCAAAATAACCTTTACTCTCCT
1 AATCTTGTATAAACAATGGTGTGATGAGCGTGGATCAAACCCACCAAAATAACCTTTACTCTCCT
*
7448243 CCATCAAAGTCACATTTTCTAAGAGAAGTGCTAGCTTGCTCAAGAAGGCTAAGGAACTTGCTAGT
66 CCATCAAAGTCACATTTTCTAAGAGAAGTGCTAGCTTGCTCAAGAAGGCTAAGGAACTCGCTAGT
7448308 CTCTTTGAGTTTTCCAGCTCTTGAGTGTTGATTACTAGGATCATTGGCTATGAACTTTAGAGGGA
131 CTCTTTGAGTTTTCCAGCTCTTGAGTGTTGATTACTAGGATCATTGGCTATGAACTTTAGAGGGA
*
7448373 TTAGCAACCTCTTTCAATTTTTTCACTTCTTATGGTGACATGATTACTCCTAGTTGCTTCCAAAT
196 TTAGCAACCTCTTTCAATTTTTGCACTTCTTATGGTGACATGATTACTCCTAGTTGCTTCCAAAT
7448438 CGTGGCATTCAGATTT
261 CGTGGCATTCAGATTT
7448454 GGATGTTAAG
Statistics
Matches: 273, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
292 273 1.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (292 bp):
AATCTTGTATAAACAATGGTGTGATGAGCGTGGATCAAACCCACCAAAATAACCTTTACTCTCCT
CCATCAAAGTCACATTTTCTAAGAGAAGTGCTAGCTTGCTCAAGAAGGCTAAGGAACTCGCTAGT
CTCTTTGAGTTTTCCAGCTCTTGAGTGTTGATTACTAGGATCATTGGCTATGAACTTTAGAGGGA
TTAGCAACCTCTTTCAATTTTTGCACTTCTTATGGTGACATGATTACTCCTAGTTGCTTCCAAAT
CGTGGCATTCAGATTTTGATTAATTTCTATTT
Found at i:7450555 original size:99 final size:98
Alignment explanation
Indices: 7450394--7450581 Score: 304
Period size: 99 Copynumber: 1.9 Consensus size: 98
7450384 TTTAAAGCTT
* * *
7450394 GCTGATTTATGATCACAGCTTTAGTTCATTGATTTATGATCATGAACAATTCATTAAGAGTTCGC
1 GCTGATTTATGATCACAACTTCAGTTCATTGATTTACGATCATGAACAATTCATTAAGAGTTCGC
*
7450459 CGATTTACGATCGCAACTATCATTTTTAACTCTC
66 CAATTTACGATCGCAACT-TCATTTTTAACTCTC
*
7450493 GCTGATTTATGATCACAACTTCAGTTTATTGATTTACGATCATGAACAATTCATTAAGAGTTCGC
1 GCTGATTTATGATCACAACTTCAGTTCATTGATTTACGATCATGAACAATTCATTAAGAGTTCGC
* *
7450558 CAATTTATGATCGTAACTTCATTT
66 CAATTTACGATCGCAACTTCATTT
7450582 AAACATTTTG
Statistics
Matches: 82, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
98 6 0.07
99 76 0.93
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (98 bp):
GCTGATTTATGATCACAACTTCAGTTCATTGATTTACGATCATGAACAATTCATTAAGAGTTCGC
CAATTTACGATCGCAACTTCATTTTTAACTCTC
Found at i:7450659 original size:134 final size:134
Alignment explanation
Indices: 7450478--7451144 Score: 646
Period size: 134 Copynumber: 5.1 Consensus size: 134
7450468 ATCGCAACTA
** * *
7450478 TCATTTTTAACTCTCGCTGATTTATGATCACAACTTCAGTTTATTGATTTACGATCATGAACAAT
1 TCATTTTTAAAGCTCGTTGATTTATGATCACAACTTCAGTTCATTGATTTACGATCATGAACAAT
* * * * *
7450543 TCATTAAGAGTTCGCCAATTTATGATCGTAACTTCATTTAAACATTTTGCTAATTTATGATTAAA
66 TCATTAAGAGTTCGCCAATTTACGATCGCAACTTCATTTAAACAGTTTGCTAATTTACGATTACA
7450608 ATTG
131 ATTG
* * * * *
7450612 CCATTTTTAAAGCTCGTTGATTTACGACCACAACTTTAGTTCATTGATTTACGATCATGAATAAT
1 TCATTTTTAAAGCTCGTTGATTTATGATCACAACTTCAGTTCATTGATTTACGATCATGAACAAT
* * * * * *
7450677 TTATTAAGAGCTCGCCGATTTACGATCACAAC-TCTATTTAAACAGTTTGCTAATTTACGATCAT
66 TCATTAAGAGTTCGCCAATTTACGATCGCAACTTC-ATTTAAACAGTTTGCTAATTTACGATTAC
*
7450741 AACTG
130 AATTG
** * * * *
7450746 TCATTTTTAAAGCTCACTGATTTATAATCACAACTTCAATTCATTGATTTATGATTATGAACAAT
1 TCATTTTTAAAGCTCGTTGATTTATGATCACAACTTCAGTTCATTGATTTACGATCATGAACAAT
* * * * * * *
7450811 TCATTAAGAGTTCGTCGATTTACGATTGCAACTCCTTTTAAATAATTTGCTAATTTACGATTACA
66 TCATTAAGAGTTCGCCAATTTACGATCGCAACTTCATTTAAACAGTTTGCTAATTTACGATTACA
* *
7450876 ACTA
131 ATTG
* * * *
7450880 TCATTTTTTAAGCTTGTTGATTTATG------A-TT-AG-----TG-CTTACGATCATGAATAAT
1 TCATTTTTAAAGCTCGTTGATTTATGATCACAACTTCAGTTCATTGATTTACGATCATGAACAAT
* ** * * * *
7450931 TCATTAAGATTTC-ATAGATTTATGATCGCAACTTCATTTAAACAGTTTGCTGATTTACGATCAT
66 TCATTAAGAGTTCGCCA-ATTTACGATCGCAACTTCATTTAAACAGTTTGCTAATTTACGATTAC
* *
7450995 ATTTA
130 AATTG
* * * *
7451000 TCATTTTTAAAGCTCGTTGATTTACGATCACAGCTTCAGTTCATTTATTTATGATCATGAACAAT
1 TCATTTTTAAAGCTCGTTGATTTATGATCACAACTTCAGTTCATTGATTTACGATCATGAACAAT
* * * * * * * * *
7451065 TCATTAAGAGTTTGTCATTTTACGATCGCAACTCCATTTAAATAGTTCGTTGATTTATGATTACA
66 TCATTAAGAGTTCGCCAATTTACGATCGCAACTTCATTTAAACAGTTTGCTAATTTACGATTACA
7451130 ATTG
131 ATTG
7451134 TCATTTTTAAA
1 TCATTTTTAAA
7451145 ACTGGCTGGT
Statistics
Matches: 424, Mismatches: 91, Indels: 36
0.77 0.17 0.07
Matches are distributed among these distances:
120 90 0.21
121 2 0.00
126 1 0.00
127 4 0.01
128 3 0.01
133 3 0.01
134 319 0.75
135 2 0.00
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41
Consensus pattern (134 bp):
TCATTTTTAAAGCTCGTTGATTTATGATCACAACTTCAGTTCATTGATTTACGATCATGAACAAT
TCATTAAGAGTTCGCCAATTTACGATCGCAACTTCATTTAAACAGTTTGCTAATTTACGATTACA
ATTG
Found at i:7451019 original size:120 final size:120
Alignment explanation
Indices: 7450802--7451023 Score: 291
Period size: 120 Copynumber: 1.9 Consensus size: 120
7450792 ATTTATGATT
* * * * *
7450802 ATGAACAATTCATTAAGAGTTCGTCGATTTACGATTGCAACTCCTTTTAAATAATTTGCTAATTT
1 ATGAACAATTCATTAAGAGTTCATAGATTTACGATCGCAACTCCATTTAAACAATTTGCTAATTT
* * *
7450867 ACGATTACAACTATCATTTTTTAAGCTTGTTGATTTATGATTAGTGCTTACGATC
66 ACGATCACAACTATCATTTTTAAAGCTCGTTGATTTATGATTAGTGCTTACGATC
* * * * * *
7450922 ATGAATAATTCATTAAGATTTCATAGATTTATGATCGCAACTTCATTTAAACAGTTTGCTGATTT
1 ATGAACAATTCATTAAGAGTTCATAGATTTACGATCGCAACTCCATTTAAACAATTTGCTAATTT
* **
7450987 ACGATCATATTTATCATTTTTAAAGCTCGTTGATTTA
66 ACGATCACAACTATCATTTTTAAAGCTCGTTGATTTA
7451024 CGATCACAGC
Statistics
Matches: 85, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
120 85 1.00
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.42
Consensus pattern (120 bp):
ATGAACAATTCATTAAGAGTTCATAGATTTACGATCGCAACTCCATTTAAACAATTTGCTAATTT
ACGATCACAACTATCATTTTTAAAGCTCGTTGATTTATGATTAGTGCTTACGATC
Found at i:7451270 original size:107 final size:107
Alignment explanation
Indices: 7451046--7451270 Score: 326
Period size: 107 Copynumber: 2.1 Consensus size: 107
7451036 CAGTTCATTT
* * *
7451046 ATTTATGATCATGAACAATTCATTAAGAGTTTGTCATTTTACGATCGCAACTCCATTTAAATAGT
1 ATTTATGATCATGAACAATTCATTAAGAGTTCGTCATTTTACGACCACAACTCCATTTAAATAGT
* * *
7451111 TCGTTGATTTATGATTACAATTGTCATTTTTAAAACTGGCTG
66 TCGTTGATTTACGATCACAATTGACATTTTTAAAACTGGCTG
* * *
7451153 GTTTACGATCATGAACAATTCATTAAGAGTTCGTCGA-TTTACGACCACAATTCCATTTAAATAG
1 ATTTATGATCATGAACAATTCATTAAGAGTTCGTC-ATTTTACGACCACAACTCCATTTAAATAG
** *
7451217 TTCGTTGATTTACGATCACAATTGACATTTTTAATGCTTGCTG
65 TTCGTTGATTTACGATCACAATTGACATTTTTAAAACTGGCTG
7451260 ATTTATGATCA
1 ATTTATGATCA
7451271 CAGTTTCAGT
Statistics
Matches: 103, Mismatches: 14, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
107 102 0.99
108 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.40
Consensus pattern (107 bp):
ATTTATGATCATGAACAATTCATTAAGAGTTCGTCATTTTACGACCACAACTCCATTTAAATAGT
TCGTTGATTTACGATCACAATTGACATTTTTAAAACTGGCTG
Found at i:7464803 original size:98 final size:98
Alignment explanation
Indices: 7464634--7464830 Score: 367
Period size: 98 Copynumber: 2.0 Consensus size: 98
7464624 GTGCAATAAA
7464634 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
** *
7464699 CCTCTAAAATCCCAAACTTGGAATATTTCTTTT
66 CCTCTAAAATCCCAAACTCAGAATATTTCCTTT
7464732 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
7464797 CCTCTAAAATCCCAAACTCAGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCAGAATATTTCCTTT
7464830 A
1 A
7464831 TTATTTTTAA
Statistics
Matches: 96, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
98 96 1.00
ACGTcount: A:0.38, C:0.24, G:0.10, T:0.28
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
CCTCTAAAATCCCAAACTCAGAATATTTCCTTT
Found at i:7466098 original size:11 final size:11
Alignment explanation
Indices: 7466084--7466108 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7466074 AAATCGACAA
7466084 AAAAACCCTAG
1 AAAAACCCTAG
7466095 AAAAACCCTAG
1 AAAAACCCTAG
7466106 AAA
1 AAA
7466109 CTTTTCGGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.24, G:0.08, T:0.08
Consensus pattern (11 bp):
AAAAACCCTAG
Found at i:7467046 original size:132 final size:131
Alignment explanation
Indices: 7466878--7468149 Score: 1959
Period size: 132 Copynumber: 9.8 Consensus size: 131
7466868 AGACTTGTAG
* *
7466878 CTTCAACCTTCTCTGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTTAATCTGCTTCCCACTAT
1 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
*
7466943 CTTGGAAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACA
66 CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTA-A
7467008 AT
130 AT
* *
7467010 CTTCAACCTTCTCCGCTGCTGCTCAGGGATACAAGGCTTGGTGGCCTAAATCTGCTTCCCACTAT
1 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
* * * *
7467075 CTTGGAAAGATAAAATTCGCCGTCTTCGATCTGTTTCATTACTGCTTAGGGAGATAAGATCTATA
66 CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTA-A
7467140 AT
130 AT
*
7467142 CTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
1 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
* * *
7467207 CTTGGAAAGATAAGATTCGCCATCTTCGATCTGCTCCACTAGTGTTTAGGGAGATAAGATCT--A
66 CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTAAA
7467270 -
131 T
* *
7467270 --T-AACCTTCTCCGCTACTGCTCAGGGAGACAAGGCTTGGTGGCTTTAATCTGCTTCCCACTAT
1 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
*
7467332 CTTGGAAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACA
66 CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTA-A
7467397 AT
130 AT
* *
7467399 CTTCAACCTTCTCCGCTGCTGCTCAGGGATACAAGGCTTGGTGGCCTAAATCTGCTTCCCACTAT
1 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
* * * *
7467464 CTTGGAAAGATAAAATTCGCCGTCTTCGATCTGTTTCATTACTGCTTAGGGAGATAAGATCTATA
66 CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTA-A
7467529 AT
130 AT
*
7467531 CTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
1 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
* * *
7467596 CTTGGAAAGATAAGATTCGCCATCTTCGATCTGCTCCACTAGTGTTTAGGGAGATAAGATCT--A
66 CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTAAA
7467659 -
131 T
* * *
7467659 --T-AACCTTCTCCGCTACTGCTTAGGGAGACAAGGCTTGGTGGCTTTAATCTGCTTCCCACTAT
1 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
*
7467721 CTTGGAAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACA
66 CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTA-A
7467786 AT
130 AT
* *
7467788 CTTCAACCTTCTCCGCTGCTGCTCAGGGATACAAGGCTTGGTGGCCTAAATCTGCTTCCCACTAT
1 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
* * * * *
7467853 CTTGGAAAGATAAAATTCGTCGTCTTCGATCTGTTTCATTACTGCTTAGGGAGATAAGATCTATA
66 CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTA-A
7467918 AT
130 AT
*
7467920 CTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
1 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
* * * *
7467985 CTTGAAAAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGTTTAGGGAGATAAGATCT--A
66 CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTAAA
7468048 -
131 T
* *
7468048 --T-AACCTTCTCCGCTACTGCTCAGGGAGACAAGGCTTGGTGGCTAAAATCTGCTTCCCACTAT
1 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
*
7468110 CTTGGAAAGATAAGATTCACCGTCTTCGATCTGCTCCACT
66 CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACT
7468150 GTAAATTCAG
Statistics
Matches: 1040, Mismatches: 86, Indels: 35
0.90 0.07 0.03
Matches are distributed among these distances:
125 325 0.31
126 3 0.00
128 2 0.00
129 3 0.00
131 2 0.00
132 705 0.68
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (131 bp):
CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
CTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTAAA
T
Found at i:7467405 original size:257 final size:260
Alignment explanation
Indices: 7466857--7468149 Score: 1932
Period size: 257 Copynumber: 5.0 Consensus size: 260
7466847 CTCTGCAACT
* * *
7466857 TTAGGGAGATAAGA-CT-TGTAGCTTCAACCTTCTCTGCTGCTGCTCAGGGAGACAAGGCTTGGT
1 TTAGGGAGATAAGATCTAT-AATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
* *
7466920 GGCTTTAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCACCGTCTTCGATCTGCTCCACTAC
65 GGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTAC
*
7466985 TGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGATACAAGGCTTG
130 TGCTTAGGGAGATAAGATCT--AA--TTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTG
* * * * *
7467050 GTGGCCTAAATCTGCTTCCCACTATCTTGGAAAGATAAAATTCGCCGTCTTCGATCTGTTTCATT
191 GTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACT
7467115 ACTGC
256 ACTGC
*
7467120 TTAGGGAGATAAGATCTATAATCTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTTGGTG
1 TTAGGGAGATAAGATCTATAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTG
* *
7467185 GCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCATCTTCGATCTGCTCCACTAGT
66 GCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACT
* *
7467250 GTTTAGGGAGATAAGATCT-A-T-AACCTTCTCCGCTACTGCTCAGGGAGACAAGGCTTGGTGGC
131 GCTTAGGGAGATAAGATCTAATTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGC
* *
7467312 TTTAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGC
196 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGC
* *
7467377 TTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGATACAAGGCTTGGTG
1 TTAGGGAGATAAGATCTATAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTG
* * * * *
7467442 GCCTAAATCTGCTTCCCACTATCTTGGAAAGATAAAATTCGCCGTCTTCGATCTGTTTCATTACT
66 GCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACT
*
7467507 GCTTAGGGAGATAAGATCTATAATCTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTTGG
131 GCTTAGGGAGATAAGATC--TAA--TTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGG
*
7467572 TGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCATCTTCGATCTGCTCCACTA
192 TGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTA
* *
7467637 GTGT
257 CTGC
* *
7467641 TTAGGGAGATAAGATC--T-A---T-AACCTTCTCCGCTACTGCTTAGGGAGACAAGGCTTGGTG
1 TTAGGGAGATAAGATCTATAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTG
* *
7467699 GCTTTAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACT
66 GCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACT
*
7467764 GCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGATACAAGGCTTGG
131 GCTTAGGGAGATAAGATCT--AA--TTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGG
* * * * * *
7467829 TGGCCTAAATCTGCTTCCCACTATCTTGGAAAGATAAAATTCGTCGTCTTCGATCTGTTTCATTA
192 TGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTA
7467894 CTGC
257 CTGC
*
7467898 TTAGGGAGATAAGATCTATAATCTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTTGGTG
1 TTAGGGAGATAAGATCTATAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTG
* * *
7467963 GCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCATCTTCGATCTGCTCCACTACT
66 GCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACT
* *
7468028 GTTTAGGGAGATAAGATCT-A-T-AACCTTCTCCGCTACTGCTCAGGGAGACAAGGCTTGGTGGC
131 GCTTAGGGAGATAAGATCTAATTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGC
* *
7468090 TAAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCACCGTCTTCGATCTGCTCCACT
196 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACT
7468150 GTAAATTCAG
Statistics
Matches: 935, Mismatches: 77, Indels: 42
0.89 0.07 0.04
Matches are distributed among these distances:
255 1 0.00
257 555 0.59
258 3 0.00
259 2 0.00
260 2 0.00
261 3 0.00
263 16 0.02
264 352 0.38
265 1 0.00
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.30
Consensus pattern (260 bp):
TTAGGGAGATAAGATCTATAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTG
GCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACT
GCTTAGGGAGATAAGATCTAATTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGC
TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGC
Found at i:7467599 original size:389 final size:389
Alignment explanation
Indices: 7466882--7468149 Score: 2455
Period size: 389 Copynumber: 3.3 Consensus size: 389
7466872 TTGTAGCTTC
* *
7466882 AACCTTCTCTGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTTAATCTGCTTCCCACTATCTTG
1 AACCTTCTCCGCTACTGCTCAGGGAGACAAGGCTTGGTGGCTTTAATCTGCTTCCCACTATCTTG
7466947 GAAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCT
66 GAAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCT
7467012 TCAACCTTCTCCGCTGCTGCTCAGGGATACAAGGCTTGGTGGCCTAAATCTGCTTCCCACTATCT
131 TCAACCTTCTCCGCTGCTGCTCAGGGATACAAGGCTTGGTGGCCTAAATCTGCTTCCCACTATCT
7467077 TGGAAAGATAAAATTCGCCGTCTTCGATCTGTTTCATTACTGCTTAGGGAGATAAGATCTATAAT
196 TGGAAAGATAAAATTCGCCGTCTTCGATCTGTTTCATTACTGCTTAGGGAGATAAGATCTATAAT
7467142 CTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
261 CTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
7467207 CTTGGAAAGATAAGATTCGCCATCTTCGATCTGCTCCACTAGTGTTTAGGGAGATAAGATCTAT
326 CTTGGAAAGATAAGATTCGCCATCTTCGATCTGCTCCACTAGTGTTTAGGGAGATAAGATCTAT
7467271 AACCTTCTCCGCTACTGCTCAGGGAGACAAGGCTTGGTGGCTTTAATCTGCTTCCCACTATCTTG
1 AACCTTCTCCGCTACTGCTCAGGGAGACAAGGCTTGGTGGCTTTAATCTGCTTCCCACTATCTTG
7467336 GAAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCT
66 GAAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCT
7467401 TCAACCTTCTCCGCTGCTGCTCAGGGATACAAGGCTTGGTGGCCTAAATCTGCTTCCCACTATCT
131 TCAACCTTCTCCGCTGCTGCTCAGGGATACAAGGCTTGGTGGCCTAAATCTGCTTCCCACTATCT
7467466 TGGAAAGATAAAATTCGCCGTCTTCGATCTGTTTCATTACTGCTTAGGGAGATAAGATCTATAAT
196 TGGAAAGATAAAATTCGCCGTCTTCGATCTGTTTCATTACTGCTTAGGGAGATAAGATCTATAAT
7467531 CTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
261 CTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
7467596 CTTGGAAAGATAAGATTCGCCATCTTCGATCTGCTCCACTAGTGTTTAGGGAGATAAGATCTAT
326 CTTGGAAAGATAAGATTCGCCATCTTCGATCTGCTCCACTAGTGTTTAGGGAGATAAGATCTAT
*
7467660 AACCTTCTCCGCTACTGCTTAGGGAGACAAGGCTTGGTGGCTTTAATCTGCTTCCCACTATCTTG
1 AACCTTCTCCGCTACTGCTCAGGGAGACAAGGCTTGGTGGCTTTAATCTGCTTCCCACTATCTTG
7467725 GAAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCT
66 GAAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCT
7467790 TCAACCTTCTCCGCTGCTGCTCAGGGATACAAGGCTTGGTGGCCTAAATCTGCTTCCCACTATCT
131 TCAACCTTCTCCGCTGCTGCTCAGGGATACAAGGCTTGGTGGCCTAAATCTGCTTCCCACTATCT
*
7467855 TGGAAAGATAAAATTCGTCGTCTTCGATCTGTTTCATTACTGCTTAGGGAGATAAGATCTATAAT
196 TGGAAAGATAAAATTCGCCGTCTTCGATCTGTTTCATTACTGCTTAGGGAGATAAGATCTATAAT
7467920 CTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
261 CTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
* * *
7467985 CTTGAAAAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGTTTAGGGAGATAAGATCTAT
326 CTTGGAAAGATAAGATTCGCCATCTTCGATCTGCTCCACTAGTGTTTAGGGAGATAAGATCTAT
**
7468049 AACCTTCTCCGCTACTGCTCAGGGAGACAAGGCTTGGTGGCTAAAATCTGCTTCCCACTATCTTG
1 AACCTTCTCCGCTACTGCTCAGGGAGACAAGGCTTGGTGGCTTTAATCTGCTTCCCACTATCTTG
7468114 GAAAGATAAGATTCACCGTCTTCGATCTGCTCCACT
66 GAAAGATAAGATTCACCGTCTTCGATCTGCTCCACT
7468150 GTAAATTCAG
Statistics
Matches: 869, Mismatches: 10, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
389 869 1.00
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.30
Consensus pattern (389 bp):
AACCTTCTCCGCTACTGCTCAGGGAGACAAGGCTTGGTGGCTTTAATCTGCTTCCCACTATCTTG
GAAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCT
TCAACCTTCTCCGCTGCTGCTCAGGGATACAAGGCTTGGTGGCCTAAATCTGCTTCCCACTATCT
TGGAAAGATAAAATTCGCCGTCTTCGATCTGTTTCATTACTGCTTAGGGAGATAAGATCTATAAT
CTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT
CTTGGAAAGATAAGATTCGCCATCTTCGATCTGCTCCACTAGTGTTTAGGGAGATAAGATCTAT
Found at i:7479479 original size:98 final size:98
Alignment explanation
Indices: 7479310--7479506 Score: 385
Period size: 98 Copynumber: 2.0 Consensus size: 98
7479300 GTGCAATAAA
7479310 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
*
7479375 CCTCTAAAATCCCAAACTTGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
7479408 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
7479473 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
7479506 A
1 A
7479507 TTATTTTAAA
Statistics
Matches: 98, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
98 98 1.00
ACGTcount: A:0.37, C:0.25, G:0.10, T:0.28
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
Found at i:7480091 original size:19 final size:19
Alignment explanation
Indices: 7480040--7480091 Score: 52
Period size: 19 Copynumber: 2.8 Consensus size: 19
7480030 TAAACATGAG
*
7480040 AAAAATATTCAT-TACAAA
1 AAAAATATACATATACAAA
* ** *
7480058 AAAAATAAATGTATACATA
1 AAAAATATACATATACAAA
7480077 AAAAATATACATATA
1 AAAAATATACATATA
7480092 TATTGTAATC
Statistics
Matches: 25, Mismatches: 8, Indels: 1
0.74 0.24 0.03
Matches are distributed among these distances:
18 8 0.32
19 17 0.68
ACGTcount: A:0.63, C:0.08, G:0.02, T:0.27
Consensus pattern (19 bp):
AAAAATATACATATACAAA
Found at i:7480360 original size:30 final size:29
Alignment explanation
Indices: 7480321--7480395 Score: 105
Period size: 30 Copynumber: 2.5 Consensus size: 29
7480311 ACCCCAAGCT
7480321 TTTCTAAAATTACATTTCAAACCCTAAAC
1 TTTCTAAAATTACATTTCAAACCCTAAAC
* *
7480350 TTTCTCAAAATTACACTTCAACCCCTAAAC
1 TTTCT-AAAATTACATTTCAAACCCTAAAC
*
7480380 TTTCAAAAAATTACAT
1 TTTC-TAAAATTACAT
7480396 CTTGGCCCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
29 5 0.12
30 35 0.88
ACGTcount: A:0.41, C:0.25, G:0.00, T:0.33
Consensus pattern (29 bp):
TTTCTAAAATTACATTTCAAACCCTAAAC
Found at i:7480982 original size:21 final size:19
Alignment explanation
Indices: 7480940--7480996 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 19
7480930 AAAGAAATAG
7480940 AAGAGAA-AGAAAAGAGAGGA
1 AAGAGAAGAGAAAAG-G-GGA
*
7480960 AAGGGAAGGAGAGAAAGGGGA
1 AAGAGAA-GAGA-AAAGGGGA
7480981 AAGAGAAGAGAAAAGG
1 AAGAGAAGAGAAAAGG
7480997 AAAAGAAGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
19 5 0.16
20 10 0.31
21 9 0.28
22 4 0.12
23 4 0.12
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (19 bp):
AAGAGAAGAGAAAAGGGGA
Found at i:7480991 original size:46 final size:48
Alignment explanation
Indices: 7480933--7481023 Score: 118
Period size: 48 Copynumber: 1.9 Consensus size: 48
7480923 GCCGAGAAAA
* *
7480933 GAAATAGAAGAG-AAA-GAAAAGAGAGGAAA-G-GGAAGGAGAGAAAGGG
1 GAAAGAGAAGAGAAAAGGAAAAGA-AGAAAAGGAGGAAGGA-AGAAAGGG
7480979 GAAAGAGAAGAGAAAAGGAAAAGAAGAAAAGGAGGAAGGAAGAAA
1 GAAAGAGAAGAGAAAAGGAAAAGAAGAAAAGGAGGAAGGAAGAAA
7481024 ATAATAGAAG
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
46 11 0.28
47 8 0.21
48 13 0.33
49 7 0.18
ACGTcount: A:0.60, C:0.00, G:0.38, T:0.01
Consensus pattern (48 bp):
GAAAGAGAAGAGAAAAGGAAAAGAAGAAAAGGAGGAAGGAAGAAAGGG
Found at i:7481008 original size:14 final size:15
Alignment explanation
Indices: 7480926--7481011 Score: 63
Period size: 15 Copynumber: 5.7 Consensus size: 15
7480916 TGGGGTTGCC
7480926 GAGAAAA-GAAATAGA
1 GAGAAAAGGAAA-AGA
7480941 -AGAGAAA-GAAAAGA
1 GAGA-AAAGGAAAAGA
* * *
7480955 GAGGAAAGGGAAGGA
1 GAGAAAAGGAAAAGA
*
7480970 GAGAAAGGGGAAAGAGAA
1 GAGAAA-AGGAAA-AG-A
7480988 GAGAAAAGGAAAAGA
1 GAGAAAAGGAAAAGA
7481003 -AGAAAAGGA
1 GAGAAAAGGA
7481012 GGAAGGAAGA
Statistics
Matches: 57, Mismatches: 8, Indels: 13
0.73 0.10 0.17
Matches are distributed among these distances:
14 18 0.32
15 20 0.35
16 6 0.11
17 6 0.11
18 7 0.12
ACGTcount: A:0.62, C:0.00, G:0.37, T:0.01
Consensus pattern (15 bp):
GAGAAAAGGAAAAGA
Found at i:7481021 original size:19 final size:20
Alignment explanation
Indices: 7480963--7481022 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 20
7480953 GAGAGGAAAG
*
7480963 GGAAGGAGAGAAAGG-GGAA
1 GGAAGAAGAGAAAGGAGGAA
*
7480982 AG-AGAAGAGAAA--AGGAA
1 GGAAGAAGAGAAAGGAGGAA
7480999 --AAGAAGA-AAAGGAGGAA
1 GGAAGAAGAGAAAGGAGGAA
7481016 GGAAGAA
1 GGAAGAA
7481023 AATAATAGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
15 3 0.09
16 6 0.18
17 9 0.27
18 9 0.27
19 6 0.18
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (20 bp):
GGAAGAAGAGAAAGGAGGAA
Found at i:7481153 original size:17 final size:16
Alignment explanation
Indices: 7481133--7481171 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
7481123 AAGTTAAGAG
*
7481133 AAGAAGAAGAAAGGAAA
1 AAGAAAAAGAAA-GAAA
*
7481150 AAGAAAAAGAGAGAAA
1 AAGAAAAAGAAAGAAA
7481166 AAGAAA
1 AAGAAA
7481172 TAAAAAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (16 bp):
AAGAAAAAGAAAGAAA
Found at i:7481171 original size:22 final size:23
Alignment explanation
Indices: 7481133--7481179 Score: 55
Period size: 22 Copynumber: 2.1 Consensus size: 23
7481123 AAGTTAAGAG
7481133 AAGAAGAAGAAAGGAAA-AAGAAA
1 AAGAAGAAGAAAGGAAATAA-AAA
7481156 AAGAGAGAA-AAA-GAAATAAAAA
1 AAGA-AGAAGAAAGGAAATAAAAA
7481178 AA
1 AA
7481180 TAAAAACAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
22 9 0.41
23 9 0.41
24 4 0.18
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (23 bp):
AAGAAGAAGAAAGGAAATAAAAA
Found at i:7481184 original size:27 final size:28
Alignment explanation
Indices: 7481128--7481185 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 28
7481118 AAAGAAAGTT
* *
7481128 AAGAGAAGAAGAAGAAAGGAAAAAGAAA
1 AAGAGAAGAAAAAGAAAGGAAAAAAAAA
**
7481156 AAGAG-AGAAAAAGAAATAAAAAAATAAA
1 AAGAGAAGAAAAAGAAAGGAAAAAA-AAA
7481184 AA
1 AA
7481186 CAGCAGGCCA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
27 15 0.60
28 10 0.40
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (28 bp):
AAGAGAAGAAAAAGAAAGGAAAAAAAAA
Found at i:7481937 original size:21 final size:21
Alignment explanation
Indices: 7481913--7481977 Score: 89
Period size: 21 Copynumber: 3.1 Consensus size: 21
7481903 CTTCGTGTTT
7481913 AAAAAATTTCCGTGTTTTCAA
1 AAAAAATTTCCGTGTTTTCAA
*
7481934 AAAAAATTTCTGTG-TTTCAA
1 AAAAAATTTCCGTGTTTTCAA
*
7481954 AAAAAA-ATCCTGTGTTTTCAA
1 AAAAAATTTCC-GTGTTTTCAA
7481975 AAA
1 AAA
7481978 TTTTAGTGTC
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
19 2 0.05
20 15 0.38
21 22 0.56
ACGTcount: A:0.43, C:0.12, G:0.09, T:0.35
Consensus pattern (21 bp):
AAAAAATTTCCGTGTTTTCAA
Found at i:7482017 original size:20 final size:20
Alignment explanation
Indices: 7481913--7482017 Score: 62
Period size: 20 Copynumber: 5.5 Consensus size: 20
7481903 CTTCGTGTTT
*
7481913 AAAAAATTTCCGTGTTTTCAA
1 AAAAAATTTTCGTGTTTT-AA
*
7481934 AAAAAA-TTTCTGTGTTTCAA
1 AAAAAATTTTC-GTGTTTTAA
* *
7481954 AAAAAA-ATCCTGTGTTTT--
1 AAAAAATTTTC-GTGTTTTAA
* * *
7481972 CAAAAATTTTAGTGTCTT--
1 AAAAAATTTTCGTGTTTTAA
*
7481990 -AGAAATTTTCGTGTTTTAA
1 AAAAAATTTTCGTGTTTTAA
7482009 AAAAAATTT
1 AAAAAATTT
7482018 CCTCGTATTT
Statistics
Matches: 65, Mismatches: 14, Indels: 11
0.72 0.16 0.12
Matches are distributed among these distances:
17 14 0.22
18 11 0.17
19 1 0.02
20 27 0.42
21 12 0.18
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41
Consensus pattern (20 bp):
AAAAAATTTTCGTGTTTTAA
Found at i:7482063 original size:18 final size:18
Alignment explanation
Indices: 7482042--7482098 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
7482032 AATTTTCGAC
*
7482042 TTTTCGCGTTTTCAAAAT
1 TTTTCGTGTTTTCAAAAT
* *
7482060 TTTTCGTGTTTTAAAAAA
1 TTTTCGTGTTTTCAAAAT
*
7482078 TTCTCGTG-TTTCACAAAT
1 TTTTCGTGTTTTCA-AAAT
7482096 TTT
1 TTT
7482099 CGTATCATCA
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
17 4 0.13
18 27 0.87
ACGTcount: A:0.25, C:0.14, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTTCGTGTTTTCAAAAT
Found at i:7486808 original size:54 final size:54
Alignment explanation
Indices: 7486711--7486813 Score: 145
Period size: 54 Copynumber: 1.9 Consensus size: 54
7486701 CTTGTTGAGC
* * * *
7486711 AAGAGTGATCTTGTTTAGAGGGAGGTTGAACTATAATGGATTAACTTTTTGGAA
1 AAGAGTGATCATGTTTAGAGGGAGGTGGAACTACAATGAATTAACTTTTTGGAA
*
7486765 AAGAGTGATCATGTTTAGAGTGAGGTGGAAGC-ACAATGAATTAACTTTT
1 AAGAGTGATCATGTTTAGAGGGAGGTGGAA-CTACAATGAATTAACTTTT
7486814 GGGCAATAGA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
54 42 0.98
55 1 0.02
ACGTcount: A:0.33, C:0.07, G:0.27, T:0.33
Consensus pattern (54 bp):
AAGAGTGATCATGTTTAGAGGGAGGTGGAACTACAATGAATTAACTTTTTGGAA
Found at i:7491496 original size:31 final size:29
Alignment explanation
Indices: 7491458--7491531 Score: 80
Period size: 29 Copynumber: 2.5 Consensus size: 29
7491448 CTAACAGCTT
7491458 AGTGACTAAAATGTTATAACATGAT-AACATA
1 AGTGACTAAAATG-T-TAACAT-ATAAACATA
* *
7491489 AGTGACTAAAACG-TAACATTTCAAACATA
1 AGTGACTAAAATGTTAACATAT-AAACATA
7491518 AGTGACTAAAATGT
1 AGTGACTAAAATGT
7491532 AATCTGAACC
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
27 1 0.03
28 6 0.16
29 18 0.49
31 12 0.32
ACGTcount: A:0.47, C:0.12, G:0.14, T:0.27
Consensus pattern (29 bp):
AGTGACTAAAATGTTAACATATAAACATA
Found at i:7494215 original size:58 final size:58
Alignment explanation
Indices: 7494111--7494223 Score: 145
Period size: 58 Copynumber: 1.9 Consensus size: 58
7494101 AATTAAACTT
** * * * *
7494111 AAAAAAAATTTAGGTACCAAATTAGGAAAAAGTACCAAGTTCAAGTACTAAATTGAGA
1 AAAAAAAATTTAAATACCAAATTAAGAAAAAATACAAAATTCAAGTACTAAATTGAGA
* * *
7494169 AAAAAAAATTTAAATACCAAATTAAGAAAAAATATAAAATTTAAGTATTAAATTG
1 AAAAAAAATTTAAATACCAAATTAAGAAAAAATACAAAATTCAAGTACTAAATTG
7494224 GATCAAATCA
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
58 46 1.00
ACGTcount: A:0.57, C:0.07, G:0.11, T:0.26
Consensus pattern (58 bp):
AAAAAAAATTTAAATACCAAATTAAGAAAAAATACAAAATTCAAGTACTAAATTGAGA
Found at i:7506026 original size:24 final size:24
Alignment explanation
Indices: 7505981--7506027 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
7505971 CCCAGATATG
* *
7505981 TTGGCATTGATATGAGCTTCGGTA
1 TTGGCATTGATACGAGCATCGGTA
7506005 TTGGCATTGATGACGA-CATCGGT
1 TTGGCATTGAT-ACGAGCATCGGT
7506028 GTCACTATCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 17 0.85
25 3 0.15
ACGTcount: A:0.21, C:0.15, G:0.30, T:0.34
Consensus pattern (24 bp):
TTGGCATTGATACGAGCATCGGTA
Found at i:7509657 original size:21 final size:23
Alignment explanation
Indices: 7509632--7509678 Score: 62
Period size: 21 Copynumber: 2.1 Consensus size: 23
7509622 CATAACTCCG
*
7509632 AACCCTTGGA-CTTTAAACTC-A
1 AACCCTTGAACCTTTAAACTCTA
*
7509653 AACCCTTGAACCTTTGAACTCTA
1 AACCCTTGAACCTTTAAACTCTA
7509676 AAC
1 AAC
7509679 TCAAATCTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 9 0.41
22 9 0.41
23 4 0.18
ACGTcount: A:0.34, C:0.30, G:0.09, T:0.28
Consensus pattern (23 bp):
AACCCTTGAACCTTTAAACTCTA
Found at i:7509712 original size:34 final size:34
Alignment explanation
Indices: 7509668--7509740 Score: 85
Period size: 34 Copynumber: 2.1 Consensus size: 34
7509658 TTGAACCTTT
* **
7509668 GAACTCTAAA-CTCAAATCTTAAACCCCAAACCCC
1 GAACCCTAAACCTCAAATCCCAAA-CCCAAACCCC
* *
7509702 GAACCCTAAACCTTAAATCCCAAACCCAAACCCT
1 GAACCCTAAACCTCAAATCCCAAACCCAAACCCC
7509736 GAACC
1 GAACC
7509741 TTAAGGTTCG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
34 23 0.70
35 10 0.30
ACGTcount: A:0.41, C:0.40, G:0.04, T:0.15
Consensus pattern (34 bp):
GAACCCTAAACCTCAAATCCCAAACCCAAACCCC
Found at i:7509741 original size:27 final size:28
Alignment explanation
Indices: 7509685--7509744 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 28
7509675 AAACTCAAAT
*
7509685 CTTAAACCCCAAACCCCGAACCCTAAAC
1 CTTAAACCCCAAACCCCAAACCCTAAAC
* *
7509713 CTTAAATCCCAAA-CCCAAACCCTGAAC
1 CTTAAACCCCAAACCCCAAACCCTAAAC
7509740 CTTAA
1 CTTAA
7509745 GGTTCGGGGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 17 0.59
28 12 0.41
ACGTcount: A:0.40, C:0.42, G:0.03, T:0.15
Consensus pattern (28 bp):
CTTAAACCCCAAACCCCAAACCCTAAAC
Found at i:7512096 original size:63 final size:64
Alignment explanation
Indices: 7512024--7512154 Score: 228
Period size: 64 Copynumber: 2.1 Consensus size: 64
7512014 ACACTTTAAT
* *
7512024 TTTATTTAGTTATGTTTTAAAA-TTTATATTTTTCCATTCTTTGATTGGTTGAGCATATAAATA
1 TTTATTTAGTTATGTTTTAAAATTTTATATTTTTCCATTCTTTAATTGGTTGAGCACATAAATA
*
7512087 TTTATTTAGTTATGTTTTAAAATTTTATATTTTTCCATTCTTTAATTGGTTGAGCACATAAATC
1 TTTATTTAGTTATGTTTTAAAATTTTATATTTTTCCATTCTTTAATTGGTTGAGCACATAAATA
7512151 TTTA
1 TTTA
7512155 CGAGGACACT
Statistics
Matches: 64, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
63 22 0.34
64 42 0.66
ACGTcount: A:0.28, C:0.08, G:0.10, T:0.54
Consensus pattern (64 bp):
TTTATTTAGTTATGTTTTAAAATTTTATATTTTTCCATTCTTTAATTGGTTGAGCACATAAATA
Found at i:7512192 original size:30 final size:30
Alignment explanation
Indices: 7512156--7512238 Score: 100
Period size: 28 Copynumber: 2.8 Consensus size: 30
7512146 AAATCTTTAC
7512156 GAGGACACTAAATCAAATAAGATTTTATAT
1 GAGGACACTAAATCAAATAAGATTTTATAT
* * *
7512186 GAGGACAC--AATTAAATATGAATTTATAT
1 GAGGACACTAAATCAAATAAGATTTTATAT
7512214 -ATGGACACTAAATCAAATATAGATT
1 GA-GGACACTAAATCAAATA-AGATT
7512239 AAATGTGATA
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
27 1 0.02
28 23 0.53
30 16 0.37
31 3 0.07
ACGTcount: A:0.47, C:0.10, G:0.13, T:0.30
Consensus pattern (30 bp):
GAGGACACTAAATCAAATAAGATTTTATAT
Found at i:7517571 original size:2 final size:2
Alignment explanation
Indices: 7517559--7517590 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
7517549 TTTATAAGTA
7517559 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7517591 AAGAAAAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:7522107 original size:222 final size:222
Alignment explanation
Indices: 7521716--7522162 Score: 876
Period size: 222 Copynumber: 2.0 Consensus size: 222
7521706 ATTAGTGTAA
7521716 ATAATACACCCTTCATTATACAAATAGTGTCTCTAGATTTTCAAAGCAAACACAATTGCAGCTAG
1 ATAATACACCCTTCATTATACAAATAGTGTCTCTAGATTTTCAAAGCAAACACAATTGCAGCTAG
7521781 CTCAAGATTGTAAGTAGGGTAGTTACCCTAGCGTGTCTTGAGCTGCCGCGACATGTAAGCGACCA
66 CTCAAGATTGTAAGTAGGGTAGTTACCCTAGCGTGTCTTGAGCTGCCGCGACATGTAAGCGACCA
*
7521846 CCTTACCGTCTTGCATAAGCACACATCCTAACCCGATATGTGAAGCATCACTATATACTATAAAC
131 CCTTACCGTCTTGCATAAGCACACACCCTAACCCGATATGTGAAGCATCACTATATACTATAAAC
7521911 TCCCGACCCAATTTCGGTTGAACTAAG
196 TCCCGACCCAATTTCGGTTGAACTAAG
7521938 ATAATACACCCTTCATTATACAAATAGTGTCTCTAGATTTTCAAAGCAAACACAATTGCAGCTAG
1 ATAATACACCCTTCATTATACAAATAGTGTCTCTAGATTTTCAAAGCAAACACAATTGCAGCTAG
7522003 CTCAAGATTGTAAGTAGGGTAGTTACCCTAGCGTGTCTTGAGCTGCCGCGACATGTAAGCGACCA
66 CTCAAGATTGTAAGTAGGGTAGTTACCCTAGCGTGTCTTGAGCTGCCGCGACATGTAAGCGACCA
*
7522068 CCTTACCGTCTTGCATAAGCACACACCCTAACTCGATATGTGAAGCATCACTATATACTATAAAC
131 CCTTACCGTCTTGCATAAGCACACACCCTAACCCGATATGTGAAGCATCACTATATACTATAAAC
7522133 TCCCGACCCAATTTCGGTTGAACTAAG
196 TCCCGACCCAATTTCGGTTGAACTAAG
7522160 ATA
1 ATA
7522163 GGAGCCTGTG
Statistics
Matches: 223, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
222 223 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.27
Consensus pattern (222 bp):
ATAATACACCCTTCATTATACAAATAGTGTCTCTAGATTTTCAAAGCAAACACAATTGCAGCTAG
CTCAAGATTGTAAGTAGGGTAGTTACCCTAGCGTGTCTTGAGCTGCCGCGACATGTAAGCGACCA
CCTTACCGTCTTGCATAAGCACACACCCTAACCCGATATGTGAAGCATCACTATATACTATAAAC
TCCCGACCCAATTTCGGTTGAACTAAG
Found at i:7525511 original size:16 final size:16
Alignment explanation
Indices: 7525490--7525524 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
7525480 TGTTGTTTTG
7525490 TTTTGACTGCATGACA
1 TTTTGACTGCATGACA
7525506 TTTTGACTGCATGACA
1 TTTTGACTGCATGACA
7525522 TTT
1 TTT
7525525 CATCATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.43
Consensus pattern (16 bp):
TTTTGACTGCATGACA
Found at i:7529225 original size:13 final size:13
Alignment explanation
Indices: 7529207--7529231 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7529197 TAAATTAATT
7529207 TCTTTGTTATCCA
1 TCTTTGTTATCCA
7529220 TCTTTGTTATCC
1 TCTTTGTTATCC
7529232 TCGATAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.24, G:0.08, T:0.56
Consensus pattern (13 bp):
TCTTTGTTATCCA
Found at i:7536427 original size:18 final size:18
Alignment explanation
Indices: 7536390--7536423 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7536380 TCAAAGAAGT
*
7536390 AAAATAAAGAAAGGAAAG
1 AAAATAAAGAAAGAAAAG
7536408 AAAATAAA-AAAGAAAA
1 AAAATAAAGAAAGAAAA
7536424 AGAAGAAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.06
Consensus pattern (18 bp):
AAAATAAAGAAAGAAAAG
Found at i:7538119 original size:47 final size:47
Alignment explanation
Indices: 7538065--7538155 Score: 155
Period size: 47 Copynumber: 1.9 Consensus size: 47
7538055 ATCAGTTCTT
* * *
7538065 ACATACTGATCATAATCCCAAACGATTTCATTGAACAATTATTCTAC
1 ACATACTGATCATAATCCCAAACAATCTCATTGAACAATGATTCTAC
7538112 ACATACTGATCATAATCCCAAACAATCTCATTGAACAATGATTC
1 ACATACTGATCATAATCCCAAACAATCTCATTGAACAATGATTC
7538156 GCCTTATTAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.40, C:0.24, G:0.07, T:0.30
Consensus pattern (47 bp):
ACATACTGATCATAATCCCAAACAATCTCATTGAACAATGATTCTAC
Found at i:7560818 original size:33 final size:33
Alignment explanation
Indices: 7560779--7560842 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
7560769 AAAAATTATA
* *
7560779 TTTAATACAATAAAATATTTATTATATTTATTT
1 TTTAATACAATAAAACATTTACTATATTTATTT
*
7560812 TTTAATATAATAAAACATTTACTATATTTAT
1 TTTAATACAATAAAACATTTACTATATTTAT
7560843 AGTAGTGTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.52
Consensus pattern (33 bp):
TTTAATACAATAAAACATTTACTATATTTATTT
Found at i:7562072 original size:28 final size:28
Alignment explanation
Indices: 7562020--7562073 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
7562010 TGACTCCACC
* **
7562020 AAAATCGAATTTTTATTTTCTCTTTACA
1 AAAATCGAATCTTTATTTTAACTTTACA
*
7562048 AAAATCGAATCTTTCTTTTAACTTTA
1 AAAATCGAATCTTTATTTTAACTTTA
7562074 TTCTTCAATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.33, C:0.15, G:0.04, T:0.48
Consensus pattern (28 bp):
AAAATCGAATCTTTATTTTAACTTTACA
Found at i:7577086 original size:41 final size:41
Alignment explanation
Indices: 7577041--7577135 Score: 138
Period size: 41 Copynumber: 2.3 Consensus size: 41
7577031 AACCTAATTG
*
7577041 GAAAAATAATTTCCTTATTCTAATAAACTACTAAAAGATAA
1 GAAAAATAATTCCCTTATTCTAATAAACTACTAAAAGATAA
* *
7577082 GAAAAATAATTCCCTTATTCTGATATACTACTAAAAGATAA
1 GAAAAATAATTCCCTTATTCTAATAAACTACTAAAAGATAA
*
7577123 AATAAAAT-ATTCC
1 GA-AAAATAATTCC
7577136 TAAAATATCT
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
41 44 0.90
42 5 0.10
ACGTcount: A:0.49, C:0.14, G:0.05, T:0.32
Consensus pattern (41 bp):
GAAAAATAATTCCCTTATTCTAATAAACTACTAAAAGATAA
Found at i:7580487 original size:23 final size:23
Alignment explanation
Indices: 7580452--7580496 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
7580442 TGGAGTATAA
* *
7580452 AAGTTTTATATTTTTATATGTAC
1 AAGTTTTATATTTATACATGTAC
7580475 AAGTTTTGA-ATTTATACATGTA
1 AAGTTTT-ATATTTATACATGTA
7580497 TATACAAGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.33, C:0.04, G:0.11, T:0.51
Consensus pattern (23 bp):
AAGTTTTATATTTATACATGTAC
Found at i:7580718 original size:2 final size:2
Alignment explanation
Indices: 7580713--7580737 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7580703 CATATATATA
7580713 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
7580738 TCTGTAATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:7581152 original size:42 final size:42
Alignment explanation
Indices: 7581105--7581349 Score: 234
Period size: 42 Copynumber: 6.2 Consensus size: 42
7581095 GGTTTATTGT
7581105 CGGTGAAATAATATCAGACTTTACGTCTAGCAGGCTTAATGC
1 CGGTGAAATAATATCAGACTTTACGTCTAGCAGGCTTAATGC
*
7581147 CGGTGAAATAATTTCAGACTTTACGTCTAGCAGGCTTAA---
1 CGGTGAAATAATATCAGACTTTACGTCTAGCAGGCTTAATGC
7581186 ---T---AT--T-TCAGACTTTACGTCTAGCAGGCTTAATGC
1 CGGTGAAATAATATCAGACTTTACGTCTAGCAGGCTTAATGC
*
7581219 CGGTGAAACAATATCAGACTTTACGTCTAGCAGGCTTAATGC
1 CGGTGAAATAATATCAGACTTTACGTCTAGCAGGCTTAATGC
* * * * * *
7581261 CGGTGAAA-CATTTCAGACTATATGTCTGGCAGGC-TAAGTGT
1 CGGTGAAATAATATCAGACTTTACGTCTAGCAGGCTTAA-TGC
* * * * *
7581302 CGGTGTACTGA-ATCAGGCTTTAAGTCTAGCAGGC-TAAGTGC
1 CGGTGAAATAATATCAGACTTTACGTCTAGCAGGCTTAA-TGC
*
7581343 CAGTGAA
1 CGGTGAA
7581350 TCTGTTTAAA
Statistics
Matches: 170, Mismatches: 19, Indels: 29
0.78 0.09 0.13
Matches are distributed among these distances:
30 26 0.15
31 1 0.01
33 2 0.01
36 2 0.01
39 1 0.01
40 3 0.02
41 59 0.35
42 76 0.45
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (42 bp):
CGGTGAAATAATATCAGACTTTACGTCTAGCAGGCTTAATGC
Found at i:7581191 original size:30 final size:30
Alignment explanation
Indices: 7581157--7581216 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
7581147 CGGTGAAATA
7581157 ATTTCAGACTTTACGTCTAGCAGGCTTAAT
1 ATTTCAGACTTTACGTCTAGCAGGCTTAAT
7581187 ATTTCAGACTTTACGTCTAGCAGGCTTAAT
1 ATTTCAGACTTTACGTCTAGCAGGCTTAAT
7581217 GCCGGTGAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.37
Consensus pattern (30 bp):
ATTTCAGACTTTACGTCTAGCAGGCTTAAT
Found at i:7581236 original size:72 final size:72
Alignment explanation
Indices: 7581118--7581258 Score: 264
Period size: 72 Copynumber: 2.0 Consensus size: 72
7581108 TGAAATAATA
* *
7581118 TCAGACTTTACGTCTAGCAGGCTTAATGCCGGTGAAATAATTTCAGACTTTACGTCTAGCAGGCT
1 TCAGACTTTACGTCTAGCAGGCTTAATGCCGGTGAAACAATATCAGACTTTACGTCTAGCAGGCT
7581183 TAATATT
66 TAATATT
7581190 TCAGACTTTACGTCTAGCAGGCTTAATGCCGGTGAAACAATATCAGACTTTACGTCTAGCAGGCT
1 TCAGACTTTACGTCTAGCAGGCTTAATGCCGGTGAAACAATATCAGACTTTACGTCTAGCAGGCT
7581255 TAAT
66 TAAT
7581259 GCCGGTGAAA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 67 1.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (72 bp):
TCAGACTTTACGTCTAGCAGGCTTAATGCCGGTGAAACAATATCAGACTTTACGTCTAGCAGGCT
TAATATT
Found at i:7584207 original size:19 final size:19
Alignment explanation
Indices: 7584183--7584223 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
7584173 TGATTTATTC
7584183 TAAGATTTATCTACCTAAA
1 TAAGATTTATCTACCTAAA
7584202 TAAGATTTATCTACCTAAA
1 TAAGATTTATCTACCTAAA
7584221 TAA
1 TAA
7584224 CTTTGAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.44, C:0.15, G:0.05, T:0.37
Consensus pattern (19 bp):
TAAGATTTATCTACCTAAA
Found at i:7588343 original size:15 final size:15
Alignment explanation
Indices: 7588321--7588359 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
7588311 CACGACAAAT
7588321 TCCCTCTCCTTATCC
1 TCCCTCTCCTTATCC
* * *
7588336 TTCCTCTCTTTCTCC
1 TCCCTCTCCTTATCC
7588351 TCCCTCTCC
1 TCCCTCTCC
7588360 CTCCTCTCCT
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.03, C:0.54, G:0.00, T:0.44
Consensus pattern (15 bp):
TCCCTCTCCTTATCC
Found at i:7592903 original size:14 final size:14
Alignment explanation
Indices: 7592884--7592923 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
7592874 TTGATTGCCA
7592884 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
7592898 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
7592912 GGAAAATGTTTT
1 GTAAAATGTTTT
7592924 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:7592932 original size:20 final size:20
Alignment explanation
Indices: 7592907--7592946 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7592897 CGTAAAATGA
*
7592907 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
7592927 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
7592947 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:7592936 original size:34 final size:35
Alignment explanation
Indices: 7592892--7592958 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
7592882 CAGTAAAATG
*
7592892 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
7592926 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
7592959 CTGGTGTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:7592962 original size:14 final size:15
Alignment explanation
Indices: 7592886--7592962 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
7592876 GATTGCCAGT
* *
7592886 AAAATG-TTTTCCGT
1 AAAATGATTTTCTGG
7592900 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
7592914 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
7592934 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
7592949 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
7592963 TGTTTAATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 25 0.50
15 11 0.22
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:7593603 original size:18 final size:18
Alignment explanation
Indices: 7593582--7593620 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
7593572 GTTGTATCTT
7593582 TAATTAAATTATTATCCA
1 TAATTAAATTATTATCCA
7593600 TAATTAAATTATTATCCA
1 TAATTAAATTATTATCCA
7593618 TAA
1 TAA
7593621 AGTTGGTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.46, C:0.10, G:0.00, T:0.44
Consensus pattern (18 bp):
TAATTAAATTATTATCCA
Found at i:7594285 original size:14 final size:13
Alignment explanation
Indices: 7594256--7594282 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7594246 AGAAGGTAAG
7594256 ACAGATACTTAAA
1 ACAGATACTTAAA
7594269 ACAGATACTTAAA
1 ACAGATACTTAAA
7594282 A
1 A
7594283 ACATACTGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.15, G:0.07, T:0.22
Consensus pattern (13 bp):
ACAGATACTTAAA
Found at i:7594685 original size:22 final size:21
Alignment explanation
Indices: 7594655--7594712 Score: 80
Period size: 22 Copynumber: 2.7 Consensus size: 21
7594645 GAATGGTATC
7594655 TACAAATCAAATCTCTAAGAT
1 TACAAATCAAATCTCTAAGAT
*
7594676 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCAAATC-TCTAAGAT
*
7594699 TACATATCAAATCT
1 TACAAATCAAATCT
7594713 ACGATTGCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 4 0.12
22 17 0.53
23 11 0.34
ACGTcount: A:0.45, C:0.19, G:0.03, T:0.33
Consensus pattern (21 bp):
TACAAATCAAATCTCTAAGAT
Found at i:7596853 original size:17 final size:16
Alignment explanation
Indices: 7596830--7596895 Score: 64
Period size: 17 Copynumber: 4.1 Consensus size: 16
7596820 TTTAGGCAGC
7596830 AAAAGAAGAAAAAGAG
1 AAAAGAAGAAAAAGAG
*
7596846 ACAAAGAAG-AGAAGA-
1 A-AAAGAAGAAAAAGAG
*
7596861 AGAAGAAGAAAAAGGAG
1 AAAAGAAGAAAAA-GAG
*
7596878 AAAAGAAAAAAATAGAG
1 AAAAGAAGAAAA-AGAG
7596895 A
1 A
7596896 TGCCAACTGT
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
14 6 0.15
15 4 0.10
16 8 0.20
17 21 0.52
18 1 0.03
ACGTcount: A:0.71, C:0.02, G:0.26, T:0.02
Consensus pattern (16 bp):
AAAAGAAGAAAAAGAG
Found at i:7596883 original size:14 final size:14
Alignment explanation
Indices: 7596835--7596887 Score: 54
Period size: 14 Copynumber: 3.6 Consensus size: 14
7596825 GCAGCAAAAG
7596835 AAGAAAAA-GAGACA
1 AAGAAAAAGGAGA-A
*
7596849 AAGAAGAGAAGAAGAA
1 AAGAA-A-AAGGAGAA
7596865 GAAGAAAAAGGAGAA
1 -AAGAAAAAGGAGAA
7596880 AAGAAAAA
1 AAGAAAAA
7596888 AATAGAGATG
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
14 13 0.39
15 8 0.24
16 4 0.12
17 8 0.24
ACGTcount: A:0.72, C:0.02, G:0.26, T:0.00
Consensus pattern (14 bp):
AAGAAAAAGGAGAA
Found at i:7602896 original size:5 final size:5
Alignment explanation
Indices: 7602886--7602924 Score: 53
Period size: 5 Copynumber: 7.8 Consensus size: 5
7602876 GTTGATAGAG
*
7602886 AAAAT AAAAT AAACA- AAAAT ATAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAA-AT AAAAT AAAAT AAAAT AAAAT AAAA
7602925 AACATATTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
4 1 0.03
5 28 0.93
6 1 0.03
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:7608118 original size:144 final size:144
Alignment explanation
Indices: 7607836--7608111 Score: 385
Period size: 144 Copynumber: 1.9 Consensus size: 144
7607826 GTTTGCCCAC
** * *
7607836 AGTGCTAGTCGGATAAATAGACGAATGTCTACCTAAAACTAGTCAGATAAATTGATGAAAGTTGC
1 AGTGCTAACCGGATAAATAGACGAATGTCTACCTAAAACTAGTCAGATAAATTAAAGAAAGTTGC
* * * *
7607901 ACCCAACGCTAGTCAGATAAACCGACGAAATAATTAGTGAGCCCAGCTCTAGTTGGATAAACTAA
66 ACCCAACACTAGTCAGATAAACCAAAGAAATAATTAGTGAGCCCAGCTCTAGTTGGATAAACCAA
7607966 CGACATTTGCACCT
131 CGACATTTGCACCT
* * **
7607980 AGTGCTAACCGGATAAATCGACGAATGTGTGACC-AGCACTAGTCAGATAAATTAAAGAAAGTTG
1 AGTGCTAACCGGATAAATAGACGAATGTCT-ACCTAAAACTAGTCAGATAAATTAAAGAAAGTTG
** *
7608044 TGCTCAACACTAGTC-GAATAAACCAAAGAAATAATTAGTGAGCCCAGCTCTAGTTGGATAAACC
65 CACCCAACACTAGTCAG-ATAAACCAAAGAAATAATTAGTGAGCCCAGCTCTAGTTGGATAAACC
7608108 AACG
129 AACG
7608112 GAATTTGTGC
Statistics
Matches: 115, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
143 1 0.01
144 111 0.97
145 3 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (144 bp):
AGTGCTAACCGGATAAATAGACGAATGTCTACCTAAAACTAGTCAGATAAATTAAAGAAAGTTGC
ACCCAACACTAGTCAGATAAACCAAAGAAATAATTAGTGAGCCCAGCTCTAGTTGGATAAACCAA
CGACATTTGCACCT
Found at i:7609665 original size:45 final size:45
Alignment explanation
Indices: 7609594--7609763 Score: 216
Period size: 45 Copynumber: 3.8 Consensus size: 45
7609584 GTGTACTGAG
* *
7609594 TATCGTTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGGG
1 TATCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGGA
* * *
7609639 TACCATCGATTATAAAGGTGGTTGCTATGTGCTGACTCCACCGGA
1 TATCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGGA
* ** * *
7609684 AATCATTGAAAATAAAGGTGGTTGCTATGTGCTGATTCGACCGAA
1 TATCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGGA
* * *
7609729 TATAATTGATTATAAGGGTGGTT-CTATGTGTTGAT
1 TATCATTGATTATAAAGGTGGTTGCTATGTGCTGAT
7609764 CCATCGTGTA
Statistics
Matches: 106, Mismatches: 19, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
44 11 0.10
45 95 0.90
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.34
Consensus pattern (45 bp):
TATCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGGA
Found at i:7619676 original size:105 final size:101
Alignment explanation
Indices: 7619497--7619690 Score: 221
Period size: 105 Copynumber: 1.9 Consensus size: 101
7619487 GACGGATAAG
* * ** *
7619497 ACCATGGTTGGACCATGGCAATGTTTAAATGTAAGACCATAACTTAGCTATGGCATTTTAATGAA
1 ACCATGGTTGGACCATGGCAATATATAAATGTAAGACCATAACCGAGCTATGGCATTTCAATGAA
* *
7619562 AAGATCATAATTAGG-TTATGGCACCTTGAATGTAAA
66 AAGACCATAACT-GGCTTATGGCACCTTGAATGTAAA
* * *
7619598 ACCATGGTTGGACCATGGCAGTATATATACATGTGTAAGACCATAGCCGGGCTATGGCA-TTCAG
1 ACCATGGTTGGACCATGGCA--ATATATA-A-ATGTAAGACCATAACCGAGCTATGGCATTTCA-
*
7619662 ATGATAAGACCATAACTGGCTTATGGCAC
61 ATGAAAAGACCATAACTGGCTTATGGCAC
7619691 TACAAATGTA
Statistics
Matches: 76, Mismatches: 11, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
101 20 0.26
103 5 0.07
104 6 0.08
105 45 0.59
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (101 bp):
ACCATGGTTGGACCATGGCAATATATAAATGTAAGACCATAACCGAGCTATGGCATTTCAATGAA
AAGACCATAACTGGCTTATGGCACCTTGAATGTAAA
Found at i:7619687 original size:33 final size:33
Alignment explanation
Indices: 7619631--7619707 Score: 86
Period size: 33 Copynumber: 2.3 Consensus size: 33
7619621 TATATACATG
* * *
7619631 TGTAAGACCATAGCCGGGCTATGGCA-TTCAGA
1 TGTAAGACCATAGACGGGCTATGGCACTACAAA
*
7619663 TGATAAGACCATA-ACTGGCTTATGGCACTACAAA
1 TG-TAAGACCATAGACGGGC-TATGGCACTACAAA
7619697 TGTAAGACCAT
1 TGTAAGACCAT
7619708 GGCAATGCAT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
32 6 0.16
33 26 0.68
34 6 0.16
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.23
Consensus pattern (33 bp):
TGTAAGACCATAGACGGGCTATGGCACTACAAA
Found at i:7620334 original size:101 final size:101
Alignment explanation
Indices: 7620212--7620411 Score: 391
Period size: 101 Copynumber: 2.0 Consensus size: 101
7620202 AAATCAATGA
7620212 AATGAGTTAAATAGGTAAGTATAAGTAATTGAAATATTTGTGATGTTATGTCATGTTGAAAACAT
1 AATGAGTTAAATAGGTAAGTATAAGTAATTGAAATATTTGTGATGTTATGTCATGTTGAAAACAT
*
7620277 GTTTTAGCTTGTATTGATTGCTTGCTTGGGATATGT
66 GTTTTAGCTTGTATTGATTGATTGCTTGGGATATGT
7620313 AATGAGTTAAATAGGTAAGTATAAGTAATTGAAATATTTGTGATGTTATGTCATGTTGAAAACAT
1 AATGAGTTAAATAGGTAAGTATAAGTAATTGAAATATTTGTGATGTTATGTCATGTTGAAAACAT
7620378 GTTTTAGCTTGTATTGATTGATTGCTTGGGATAT
66 GTTTTAGCTTGTATTGATTGATTGCTTGGGATAT
7620412 ATTGGTGTAT
Statistics
Matches: 98, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
101 98 1.00
ACGTcount: A:0.32, C:0.04, G:0.23, T:0.41
Consensus pattern (101 bp):
AATGAGTTAAATAGGTAAGTATAAGTAATTGAAATATTTGTGATGTTATGTCATGTTGAAAACAT
GTTTTAGCTTGTATTGATTGATTGCTTGGGATATGT
Found at i:7631297 original size:37 final size:37
Alignment explanation
Indices: 7631256--7631412 Score: 197
Period size: 37 Copynumber: 4.2 Consensus size: 37
7631246 CAATCACTCG
* * * ** *
7631256 TAAGAGCTAATCCACTCGATAACACGCCAGGCGCTAA
1 TAAGAGCTAGTCCACTCGATAACAAGCTAGATGCTCA
*
7631293 TAAGAGCTAGTCCACTCGATAACATGCTAGATGCTCA
1 TAAGAGCTAGTCCACTCGATAACAAGCTAGATGCTCA
*
7631330 TAAGAGCTAGTCCACCCGATAACAAGCTAGATGCTCA
1 TAAGAGCTAGTCCACTCGATAACAAGCTAGATGCTCA
* * * * *
7631367 TAAGAGCTAGTCCACCCAATAGCACGTTAGATGCTCA
1 TAAGAGCTAGTCCACTCGATAACAAGCTAGATGCTCA
7631404 TAAGAGCTA
1 TAAGAGCTA
7631413 ATCAAACTGA
Statistics
Matches: 108, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 108 1.00
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.20
Consensus pattern (37 bp):
TAAGAGCTAGTCCACTCGATAACAAGCTAGATGCTCA
Found at i:7633871 original size:20 final size:20
Alignment explanation
Indices: 7633846--7633887 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
7633836 GAAATGAGAC
* *
7633846 AAATATTGAGTAAAAAATTG
1 AAATATTAAATAAAAAATTG
*
7633866 AAATATTAAATATAAAATTG
1 AAATATTAAATAAAAAATTG
7633886 AA
1 AA
7633888 TTGTGTTGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.31
Consensus pattern (20 bp):
AAATATTAAATAAAAAATTG
Found at i:7635858 original size:14 final size:14
Alignment explanation
Indices: 7635822--7635858 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 14
7635812 CAAATGGTAG
*
7635822 ACATATTTGAATAC
1 ACATATTTGAATAA
7635836 ACAATATTTGAATAA
1 AC-ATATTTGAATAA
7635851 ACATATTT
1 ACATATTT
7635859 AAAGTACTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.46, C:0.11, G:0.05, T:0.38
Consensus pattern (14 bp):
ACATATTTGAATAA
Found at i:7643233 original size:27 final size:30
Alignment explanation
Indices: 7643197--7643261 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
7643187 TTTATATTTG
*
7643197 TAAAATTTTAT-AA-ATATTTT-TGATAAAA
1 TAAAA-TTTATGAATATATTTTATAATAAAA
*
7643225 TAAAATTTATGAATATATTTTATAATTAAA
1 TAAAATTTATGAATATATTTTATAATAAAA
7643255 TAAAATT
1 TAAAATT
7643262 AATTTTCAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
27 5 0.16
28 7 0.22
29 7 0.22
30 13 0.41
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (30 bp):
TAAAATTTATGAATATATTTTATAATAAAA
Found at i:7643729 original size:24 final size:24
Alignment explanation
Indices: 7643697--7643742 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
7643687 TACTAGGATG
7643697 GTGAGATTCAAGTGTTCTTTTATC
1 GTGAGATTCAAGTGTTCTTTTATC
7643721 GTGAGATTCAAGTGTTCTTTTA
1 GTGAGATTCAAGTGTTCTTTTA
7643743 CTTTTCTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.22, C:0.11, G:0.22, T:0.46
Consensus pattern (24 bp):
GTGAGATTCAAGTGTTCTTTTATC
Found at i:7644182 original size:47 final size:46
Alignment explanation
Indices: 7644090--7644183 Score: 127
Period size: 46 Copynumber: 2.0 Consensus size: 46
7644080 TTATAAATTA
* * *
7644090 TTTAGGGGTTACAAGATAATGAATTAGGGGTTATGAATATTCATTT
1 TTTAGGGGTTACAAGAGAATGAATTAGGGGTTATGAACATCCATTT
*
7644136 TTTAGGGGTTACAATAGAATGGAATT-GGGCGTTATGAACATCCATTT
1 TTTAGGGGTTACAAGAGAAT-GAATTAGGG-GTTATGAACATCCATTT
7644183 T
1 T
7644184 ATCAAATGAT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
46 21 0.50
47 21 0.50
ACGTcount: A:0.31, C:0.07, G:0.24, T:0.37
Consensus pattern (46 bp):
TTTAGGGGTTACAAGAGAATGAATTAGGGGTTATGAACATCCATTT
Found at i:7645620 original size:18 final size:17
Alignment explanation
Indices: 7645599--7645647 Score: 62
Period size: 18 Copynumber: 2.8 Consensus size: 17
7645589 ACTTTATATA
7645599 CTTCAGGGATTTTAAATT
1 CTTCAGGGATTTTAAA-T
*
7645617 CTTCTGGGATTTTAAAT
1 CTTCAGGGATTTTAAAT
*
7645634 CTTTCAAGGATTTT
1 C-TTCAGGGATTTT
7645648 CATATAAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
17 2 0.07
18 25 0.93
ACGTcount: A:0.24, C:0.12, G:0.16, T:0.47
Consensus pattern (17 bp):
CTTCAGGGATTTTAAAT
Done.