Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53248092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1300000 characters in sequence are not A, C, G, or T
File 30 of 175
Found at i:8068059 original size:102 final size:102
Alignment explanation
Indices: 8067928--8068156 Score: 332
Period size: 102 Copynumber: 2.2 Consensus size: 102
8067918 GTGGGCAGTC
* * *
8067928 AATTATGTAAAGTTCTATGTATGAACTGTGAATGCAAGATATGTGCGTACTGATTATGTAAAGTT
1 AATTATGTAAAGTTCTATGTGTGAACTGTGAATGCAAGATATGCGCGTACTAATTATGTAAAGTT
8067993 ATATATATGAATTGTGAATGCAAGATATGTGCATACT
66 ATATATATGAATTGTGAATGCAAGATATGTGCATACT
* * *
8068030 GATTTTGTAAAGTTCTATGTGTGAACTGTGAATGCAAGATATGCGTGTACTAATTATGTAAAGTT
1 AATTATGTAAAGTTCTATGTGTGAACTGTGAATGCAAGATATGCGCGTACTAATTATGTAAAGTT
* * * * *
8068095 CTATCTGTGAATTGTGAATGCAAGGTTTGTGCATACT
66 ATATATATGAATTGTGAATGCAAGATATGTGCATACT
* *
8068132 AATTATGTAAAAATTTTATGTGTGA
1 AATTATGT-AAAGTTCTATGTGTGA
8068157 TCTGGCATTG
Statistics
Matches: 111, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
102 97 0.87
103 14 0.13
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (102 bp):
AATTATGTAAAGTTCTATGTGTGAACTGTGAATGCAAGATATGCGCGTACTAATTATGTAAAGTT
ATATATATGAATTGTGAATGCAAGATATGTGCATACT
Found at i:8068478 original size:32 final size:32
Alignment explanation
Indices: 8068431--8068556 Score: 146
Period size: 32 Copynumber: 3.8 Consensus size: 32
8068421 GTCGTATCGT
* * *
8068431 TGTGCAAGTTGTTCAATATGCGTGCCGTAAAA
1 TGTGCGAGTTGTTCAATATGCGTGCCATAGAA
* *
8068463 TGTGTGAGTTGTTCAATATGCATGCCATAGAA
1 TGTGCGAGTTGTTCAATATGCGTGCCATAGAA
* *
8068495 TGTGCGAGTTATTCAA-ATTGTGTGCCATAGAA
1 TGTGCGAGTTGTTCAATA-TGCGTGCCATAGAA
8068527 TGTGCGAGTTTTGTTCAAATATGCGTGCCA
1 TGTGCGAG--TTGTTC-AATATGCGTGCCA
8068557 AATAGTGCGA
Statistics
Matches: 78, Mismatches: 11, Indels: 7
0.81 0.11 0.07
Matches are distributed among these distances:
31 1 0.01
32 61 0.78
34 5 0.06
35 10 0.13
36 1 0.01
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.34
Consensus pattern (32 bp):
TGTGCGAGTTGTTCAATATGCGTGCCATAGAA
Found at i:8068856 original size:18 final size:18
Alignment explanation
Indices: 8068803--8068856 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
8068793 TTTCACCTAA
*
8068803 ACCCAATCCAAACCCAAGT
1 ACCCAA-CCAAACCCAATT
* *
8068822 ATCCAACCCAACCCAATT
1 ACCCAACCAAACCCAATT
*
8068840 ACCCAACCTAACCCAAT
1 ACCCAACCAAACCCAAT
8068857 CATAAAAATT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
18 25 0.83
19 5 0.17
ACGTcount: A:0.41, C:0.44, G:0.02, T:0.13
Consensus pattern (18 bp):
ACCCAACCAAACCCAATT
Found at i:8068896 original size:24 final size:24
Alignment explanation
Indices: 8068858--8068908 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
8068848 TAACCCAATC
* *
8068858 ATAAAAATTACAAATAATTTAATAA
1 ATAAAAATTAAAAATAATAT-ATAA
8068883 ATAAAAA-TAAAAATAATATATAA
1 ATAAAAATTAAAAATAATATATAA
8068906 ATA
1 ATA
8068909 GGCACATGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 7 0.29
24 10 0.42
25 7 0.29
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (24 bp):
ATAAAAATTAAAAATAATATATAA
Found at i:8069065 original size:37 final size:37
Alignment explanation
Indices: 8069019--8069093 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
8069009 TCTTAATTTC
* *
8069019 AAGACTTATGTAATTTTTTTAATTATGTACTGATTCA
1 AAGAATTATGTAATGTTTTTAATTATGTACTGATTCA
*
8069056 AAGAATTATGTAATGTTTTTAATTATGTAGTGATTCA
1 AAGAATTATGTAATGTTTTTAATTATGTACTGATTCA
8069093 A
1 A
8069094 TTCGGTTAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.35, C:0.05, G:0.13, T:0.47
Consensus pattern (37 bp):
AAGAATTATGTAATGTTTTTAATTATGTACTGATTCA
Found at i:8069150 original size:9 final size:9
Alignment explanation
Indices: 8069092--8069149 Score: 73
Period size: 9 Copynumber: 6.4 Consensus size: 9
8069082 GTAGTGATTC
8069092 AATTCGGTT
1 AATTCGGTT
*
8069101 AATTCGGGT
1 AATTCGGTT
8069110 AATTCAGG-T
1 AATTC-GGTT
8069119 AATTCGGTT
1 AATTCGGTT
*
8069128 AATTCGGCT
1 AATTCGGTT
*
8069137 AATTTGGTT
1 AATTCGGTT
8069146 AATT
1 AATT
8069150 TTAAACAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
8 2 0.05
9 39 0.91
10 2 0.05
ACGTcount: A:0.26, C:0.10, G:0.22, T:0.41
Consensus pattern (9 bp):
AATTCGGTT
Found at i:8069884 original size:35 final size:35
Alignment explanation
Indices: 8069837--8070043 Score: 237
Period size: 35 Copynumber: 6.1 Consensus size: 35
8069827 TTCACTTGTC
* *
8069837 TTTTCTTGCAGGGAATATTTCCTGTTCACGCATTA
1 TTTTGTTGCAGGGAATCTTTCCTGTTCACGCATTA
* * *
8069872 TTCTGTTACAGGGAATCTTTCCTGTTCA--CATCA
1 TTTTGTTGCAGGGAATCTTTCCTGTTCACGCATTA
* *
8069905 -TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTA
1 TTTTGTTGCAGGGAATCTTTCCTGTTCACGCATTA
* *
8069939 TTTTGTTGCAGGGAATCTCTCCTGTTCACACATTA
1 TTTTGTTGCAGGGAATCTTTCCTGTTCACGCATTA
* *
8069974 TTTTGTTGCAGGGAATCTTTACTGTTCA--CATCA
1 TTTTGTTGCAGGGAATCTTTCCTGTTCACGCATTA
* * * *
8070007 -TTTCTTGCAGGGAATCTCTCCTGTTCATGTATTA
1 TTTTGTTGCAGGGAATCTTTCCTGTTCACGCATTA
8070041 TTT
1 TTT
8070044 CTTTTTGGAC
Statistics
Matches: 146, Mismatches: 20, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
32 47 0.32
33 8 0.05
34 7 0.05
35 84 0.58
ACGTcount: A:0.19, C:0.22, G:0.17, T:0.42
Consensus pattern (35 bp):
TTTTGTTGCAGGGAATCTTTCCTGTTCACGCATTA
Found at i:8069951 original size:67 final size:68
Alignment explanation
Indices: 8069837--8070033 Score: 258
Period size: 67 Copynumber: 2.9 Consensus size: 68
8069827 TTCACTTGTC
* * * *
8069837 TTTTCTTGCAGGGAATATTTCCTGTTCACGCATTATTCTGTTACAGGGAATCTTTCCTGTTCACA
1 TTTTCTTGCAGGGAATCTTTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCACA
8069902 TCA
66 TCA
*
8069905 -TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCACA
1 TTTTCTTGCAGGGAATCTTTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTT--CA
*
8069969 CATTA
64 CATCA
* * * *
8069974 TTTTGTTGCAGGGAATCTTTACTGTTCA--CATCA-TTTCTTGCAGGGAATCTCTCCTGTTCA
1 TTTTCTTGCAGGGAATCTTTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCA
8070034 TGTATTATTT
Statistics
Matches: 115, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
65 2 0.02
67 79 0.69
68 4 0.03
69 6 0.05
70 24 0.21
ACGTcount: A:0.19, C:0.23, G:0.17, T:0.41
Consensus pattern (68 bp):
TTTTCTTGCAGGGAATCTTTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCACA
TCA
Found at i:8070018 original size:102 final size:102
Alignment explanation
Indices: 8069837--8070043 Score: 333
Period size: 102 Copynumber: 2.0 Consensus size: 102
8069827 TTCACTTGTC
* * *
8069837 TTTTCTTGCAGGGAATATTTCCTGTTCACGCATTATTCTGTTACAGGGAATCTTTCCTGTTCACA
1 TTTTCTTGCAGGGAATATCTCCTGTTCACACATTATTCTGTTACAGGGAATCTTTACTGTTCACA
8069902 TCATTTCTTGCAGGGAATCTCTCCTGTTCACGCATTA
66 TCATTTCTTGCAGGGAATCTCTCCTGTTCACGCATTA
* * * *
8069939 TTTTGTTGCAGGGAATCTCTCCTGTTCACACATTATTTTGTTGCAGGGAATCTTTACTGTTCACA
1 TTTTCTTGCAGGGAATATCTCCTGTTCACACATTATTCTGTTACAGGGAATCTTTACTGTTCACA
* *
8070004 TCATTTCTTGCAGGGAATCTCTCCTGTTCATGTATTA
66 TCATTTCTTGCAGGGAATCTCTCCTGTTCACGCATTA
8070041 TTT
1 TTT
8070044 CTTTTTGGAC
Statistics
Matches: 96, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
102 96 1.00
ACGTcount: A:0.19, C:0.22, G:0.17, T:0.42
Consensus pattern (102 bp):
TTTTCTTGCAGGGAATATCTCCTGTTCACACATTATTCTGTTACAGGGAATCTTTACTGTTCACA
TCATTTCTTGCAGGGAATCTCTCCTGTTCACGCATTA
Found at i:8072874 original size:21 final size:22
Alignment explanation
Indices: 8072844--8072888 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
8072834 GAGCAAATTG
8072844 TTGATTCTATTTCCTTTTTG-AT
1 TTGATTCTA-TTCCTTTTTGTAT
*
8072866 TTGA-TCTATTCTTTTTTGTAT
1 TTGATTCTATTCCTTTTTGTAT
8072887 TT
1 TT
8072889 CTCTTTTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 9 0.43
21 8 0.38
22 4 0.19
ACGTcount: A:0.13, C:0.11, G:0.09, T:0.67
Consensus pattern (22 bp):
TTGATTCTATTCCTTTTTGTAT
Found at i:8076452 original size:35 final size:34
Alignment explanation
Indices: 8076409--8076512 Score: 140
Period size: 32 Copynumber: 3.1 Consensus size: 34
8076399 TCACTTGTCT
*
8076409 TTTCTTGCAGGGAATATTTCCTGTTCACGCATTA
1 TTTCTTGCAGGGAATCTTTCCTGTTCACGCATTA
* * *
8076443 TTCTGTTGCAGGGAATCTTTCCTCTTCA--CATCA
1 TT-TCTTGCAGGGAATCTTTCCTGTTCACGCATTA
*
8076476 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTA
1 TTTCTTGCAGGGAATCTTTCCTGTTCACGCATTA
8076510 TTT
1 TTT
8076513 TGTAGAACAA
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
32 22 0.37
33 6 0.10
34 9 0.15
35 22 0.37
ACGTcount: A:0.18, C:0.24, G:0.16, T:0.41
Consensus pattern (34 bp):
TTTCTTGCAGGGAATCTTTCCTGTTCACGCATTA
Found at i:8077196 original size:21 final size:22
Alignment explanation
Indices: 8077172--8077216 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
8077162 AGAAAAAGAG
8077172 AAATACAAAAAAG-AATAG-ATC
1 AAAT-CAAAAAAGAAATAGAATC
*
8077193 AAATCAAAAAGGAAATAGAATC
1 AAATCAAAAAAGAAATAGAATC
8077215 AA
1 AA
8077217 CAATTTACTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 7 0.33
21 9 0.43
22 5 0.24
ACGTcount: A:0.67, C:0.09, G:0.11, T:0.13
Consensus pattern (22 bp):
AAATCAAAAAAGAAATAGAATC
Found at i:8081023 original size:23 final size:23
Alignment explanation
Indices: 8080983--8081029 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
8080973 TTCTATACAT
*
8080983 GTACATATTTGGGCAGCACGCAG
1 GTACATATTTGGGCAGCAAGCAG
*
8081006 GTACATA-TTGGGATAGCAAGCAG
1 GTACATATTTGGG-CAGCAAGCAG
8081029 G
1 G
8081030 CTTGACCAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.30, C:0.17, G:0.32, T:0.21
Consensus pattern (23 bp):
GTACATATTTGGGCAGCAAGCAG
Found at i:8082407 original size:26 final size:25
Alignment explanation
Indices: 8082367--8082415 Score: 80
Period size: 26 Copynumber: 1.9 Consensus size: 25
8082357 ACGAACGCCC
8082367 TTCTTTGCTCTCTGCTCTCTGCTGG
1 TTCTTTGCTCTCTGCTCTCTGCTGG
*
8082392 TTCTTTGTTTCTCTGCTCTCTGCT
1 TTCTTTG-CTCTCTGCTCTCTGCT
8082416 ACGCTGGTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.00, C:0.31, G:0.16, T:0.53
Consensus pattern (25 bp):
TTCTTTGCTCTCTGCTCTCTGCTGG
Found at i:8082425 original size:31 final size:33
Alignment explanation
Indices: 8082367--8082429 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
8082357 ACGAACGCCC
* *
8082367 TTCTTTGCTCTCTGCTCTCTGCTGGTTCTTTGT
1 TTCTCTGCTCTCTGCTCACTGCTGGTTCTTTGT
8082400 TTCTCTGCTCTCTGCT-AC-GCTGGTTCTTTG
1 TTCTCTGCTCTCTGCTCACTGCTGGTTCTTTG
8082430 CCCTCGTCTC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 12 0.43
32 1 0.04
33 15 0.54
ACGTcount: A:0.02, C:0.29, G:0.19, T:0.51
Consensus pattern (33 bp):
TTCTCTGCTCTCTGCTCACTGCTGGTTCTTTGT
Found at i:8085011 original size:13 final size:13
Alignment explanation
Indices: 8084993--8085053 Score: 68
Period size: 13 Copynumber: 4.7 Consensus size: 13
8084983 CTCAAATTTT
8084993 TCAAAAGCACTTC
1 TCAAAAGCACTTC
*
8085006 TCAAAAGCACTTT
1 TCAAAAGCACTTC
* *
8085019 TCCAGAGCACTTC
1 TCAAAAGCACTTC
* * *
8085032 TCAAAAACATTTT
1 TCAAAAGCACTTC
8085045 TCAAAAGCA
1 TCAAAAGCA
8085054 ATGAAGAACT
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
13 38 1.00
ACGTcount: A:0.39, C:0.26, G:0.08, T:0.26
Consensus pattern (13 bp):
TCAAAAGCACTTC
Found at i:8085053 original size:26 final size:26
Alignment explanation
Indices: 8084988--8085053 Score: 96
Period size: 26 Copynumber: 2.5 Consensus size: 26
8084978 AAACACTCAA
*
8084988 ATTTTTCAAAAGCACTTCTCAAAAGC
1 ATTTTTCAAAAGCACTTCTCAAAAAC
* * *
8085014 ACTTTTCCAGAGCACTTCTCAAAAAC
1 ATTTTTCAAAAGCACTTCTCAAAAAC
8085040 ATTTTTCAAAAGCA
1 ATTTTTCAAAAGCA
8085054 ATGAAGAACT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.38, C:0.24, G:0.08, T:0.30
Consensus pattern (26 bp):
ATTTTTCAAAAGCACTTCTCAAAAAC
Found at i:8093804 original size:29 final size:28
Alignment explanation
Indices: 8093770--8093860 Score: 73
Period size: 29 Copynumber: 3.2 Consensus size: 28
8093760 TTGTTTAAAG
8093770 AAGCCCTTATACTATTTTCGTAGTTTAAT
1 AAGCCCTTATACTATTTT-GTAGTTTAAT
* *
8093799 AAGCCCCTAGT-CTATAATTT-T--TTTAAAG
1 AAGCCCTTA-TACTAT--TTTGTAGTTT-AAT
*
8093827 AAGCCCTTATACTATTTTTGTAGTTAAAT
1 AAGCCCTTATACTA-TTTTGTAGTTTAAT
8093856 AAGCC
1 AAGCC
8093861 TCTAACCTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 18
0.68 0.07 0.25
Matches are distributed among these distances:
27 7 0.15
28 14 0.29
29 21 0.44
30 3 0.06
31 3 0.06
ACGTcount: A:0.31, C:0.18, G:0.11, T:0.41
Consensus pattern (28 bp):
AAGCCCTTATACTATTTTGTAGTTTAAT
Found at i:8093871 original size:57 final size:57
Alignment explanation
Indices: 8093763--8093873 Score: 177
Period size: 57 Copynumber: 1.9 Consensus size: 57
8093753 ATACTCTTTG
* **
8093763 TTTAAAGAAGCCCTTATACTATTTTCGTAGTTTAATAAGCCCCTAGTCTATAATTTT
1 TTTAAAGAAGCCCTTATACTATTTTCGTAGTTAAATAAGCCCCTAACCTATAATTTT
* *
8093820 TTTAAAGAAGCCCTTATACTATTTTTGTAGTTAAATAAGCCTCTAACCTATAAT
1 TTTAAAGAAGCCCTTATACTATTTTCGTAGTTAAATAAGCCCCTAACCTATAAT
8093874 GTTTACCCAT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 49 1.00
ACGTcount: A:0.32, C:0.17, G:0.10, T:0.41
Consensus pattern (57 bp):
TTTAAAGAAGCCCTTATACTATTTTCGTAGTTAAATAAGCCCCTAACCTATAATTTT
Found at i:8100302 original size:10 final size:10
Alignment explanation
Indices: 8100287--8100314 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
8100277 AACTCACATT
8100287 CAATATCATC
1 CAATATCATC
8100297 CAATATCATC
1 CAATATCATC
8100307 CAATATCA
1 CAATATCA
8100315 ATCATAGTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.43, C:0.29, G:0.00, T:0.29
Consensus pattern (10 bp):
CAATATCATC
Found at i:8102722 original size:26 final size:26
Alignment explanation
Indices: 8102691--8102751 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 26
8102681 GTCCATTTTT
* * *
8102691 AATAAACACCAAAAAATTATTTTAAA
1 AATAAAAAACAAAAAAATATTTTAAA
*
8102717 AATAAAAAAATAAAAAAATATTTTAAA
1 AAT-AAAAAACAAAAAAATATTTTAAA
8102744 AATAAAAA
1 AATAAAAA
8102752 TATATATTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 8 0.27
27 22 0.73
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (26 bp):
AATAAAAAACAAAAAAATATTTTAAA
Found at i:8102756 original size:19 final size:20
Alignment explanation
Indices: 8102722--8102761 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
8102712 TTAAAAATAA
8102722 AAAAATAAAAAAATAT-TTT
1 AAAAATAAAAAAATATATTT
*
8102741 AAAAATAAAAATATATATTT
1 AAAAATAAAAAAATATATTT
8102761 A
1 A
8102762 TGGCCAGGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAAATAAAAAAATATATTT
Found at i:8103522 original size:10 final size:9
Alignment explanation
Indices: 8103497--8103579 Score: 53
Period size: 9 Copynumber: 8.8 Consensus size: 9
8103487 AAAGAAGAAG
*
8103497 ATAAAAATCA
1 ATAAAAAT-T
*
8103507 ATAAAAGTT
1 ATAAAAATT
8103516 ATAAAAATT
1 ATAAAAATT
**
8103525 ATTAAATTTT
1 A-TAAAAATT
*
8103535 AATAAAAAAT
1 -ATAAAAATT
8103545 ATAAAAA-T
1 ATAAAAATT
8103553 ATCAAAAATCGT
1 AT-AAAAAT--T
8103565 A-AAAAATT
1 ATAAAAATT
8103573 ATAAAAA
1 ATAAAAA
8103580 AATTGTAAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 15
0.72 0.10 0.19
Matches are distributed among these distances:
8 5 0.09
9 26 0.45
10 24 0.41
11 1 0.02
12 2 0.03
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (9 bp):
ATAAAAATT
Found at i:8103569 original size:19 final size:18
Alignment explanation
Indices: 8103547--8103608 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 18
8103537 TAAAAAATAT
8103547 AAAAATATCAAAAATCGTA
1 AAAAATAT-AAAAATCGTA
*
8103566 AAAAATTATAAAAAAATTGTA
1 AAAAA-TAT--AAAAATCGTA
**
8103587 AAATTTTATAAAAATCGTA
1 AAA-AATATAAAAATCGTA
8103606 AAA
1 AAA
8103609 TAAATTTATA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
19 17 0.49
20 3 0.09
21 15 0.43
ACGTcount: A:0.63, C:0.05, G:0.05, T:0.27
Consensus pattern (18 bp):
AAAAATATAAAAATCGTA
Found at i:8103572 original size:40 final size:40
Alignment explanation
Indices: 8103528--8103641 Score: 99
Period size: 40 Copynumber: 2.8 Consensus size: 40
8103518 AAAAATTATT
8103528 AAATTTTAATAAAAAATATAAAA-ATATCAAAAATCGTAAA
1 AAATTTTAATAAAAAATATAAAATATAT-AAAAATCGTAAA
* * * *
8103568 AAATTATAA-AAAAATTGTAAAATTTTATAAAAATCGTAAA
1 AAATTTTAATAAAAAATATAAAA-TATATAAAAATCGTAAA
* * * *
8103608 ATAAATTT-ATAAAATATATAGGAATATAGAAAAA
1 A-AATTTTAATAAAAAATATA-AAATATATAAAAA
8103642 AATTTATAAA
Statistics
Matches: 57, Mismatches: 12, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
39 11 0.19
40 22 0.39
41 22 0.39
42 2 0.04
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (40 bp):
AAATTTTAATAAAAAATATAAAATATATAAAAATCGTAAA
Found at i:8103582 original size:21 final size:21
Alignment explanation
Indices: 8103556--8103608 Score: 65
Period size: 19 Copynumber: 2.6 Consensus size: 21
8103546 TAAAAATATC
8103556 AAAAATCGTAAAAAATTATAA
1 AAAAATCGTAAAAAATTATAA
* * *
8103577 AAAAATTGT--AAAATTTTAT
1 AAAAATCGTAAAAAATTATAA
8103596 AAAAATCGTAAAA
1 AAAAATCGTAAAA
8103609 TAAATTTATA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 16 0.62
21 10 0.38
ACGTcount: A:0.62, C:0.04, G:0.06, T:0.28
Consensus pattern (21 bp):
AAAAATCGTAAAAAATTATAA
Found at i:8103696 original size:62 final size:62
Alignment explanation
Indices: 8103557--8103697 Score: 137
Period size: 62 Copynumber: 2.3 Consensus size: 62
8103547 AAAAATATCA
* * * * *
8103557 AAAATCGTAAA-AAAT-TATAAAAAAATTGTAAAATTTTATAAAAATCGTAAAATAAATTTAT
1 AAAATC-TAAAGAAATATAGAAAAAAATTATAAAAGTTTATAAAAATCATAAAATAAATTTAG
* * * * *
8103618 AAAATATATAGGAATATAGAAAAAAATTTATAAAAGTTTAT-AAATTCATAAGA-AAATTATAG
1 AAAATCTAAAGAAATATAGAAAAAAA-TTATAAAAGTTTATAAAAATCATAAAATAAATT-TAG
8103680 AAAATCTAAAGAAATATA
1 AAAATCTAAAGAAATATA
8103698 AAACTTGTAA
Statistics
Matches: 63, Mismatches: 13, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
60 3 0.05
61 13 0.21
62 35 0.56
63 12 0.19
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.30
Consensus pattern (62 bp):
AAAATCTAAAGAAATATAGAAAAAAATTATAAAAGTTTATAAAAATCATAAAATAAATTTAG
Found at i:8107852 original size:17 final size:16
Alignment explanation
Indices: 8107805--8107852 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 16
8107795 GGCATATAAT
8107805 ATTTAGATAGATTATTA
1 ATTT-GATAGATTATTA
* *
8107822 ATTTGAGAAAATTAGTTA
1 ATTTGA-TAGATTA-TTA
8107840 ATTTGATAGATTA
1 ATTTGATAGATTA
8107853 ACTAATTAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
16 2 0.08
17 14 0.56
18 9 0.36
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.44
Consensus pattern (16 bp):
ATTTGATAGATTATTA
Found at i:8108436 original size:21 final size:21
Alignment explanation
Indices: 8108349--8108447 Score: 112
Period size: 21 Copynumber: 4.8 Consensus size: 21
8108339 TGGGTGGATC
*
8108349 AGCTCTTATGAGCTTCTTTTT
1 AGCTCTTATGAGCTTCTATTT
* * *
8108370 AGTTCTTACGAGCTTCTGTTT
1 AGCTCTTATGAGCTTCTATTT
* *
8108391 AGTTCTTACGAGCTTCTATTT
1 AGCTCTTATGAGCTTCTATTT
* *
8108412 AGCTCTTATGAGCTTTTATTC
1 AGCTCTTATGAGCTTCTATTT
8108433 AGCT-TT-TGAGCTTCT
1 AGCTCTTATGAGCTTCT
8108448 GTCGACGTAT
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
19 8 0.12
20 2 0.03
21 59 0.86
ACGTcount: A:0.16, C:0.19, G:0.16, T:0.48
Consensus pattern (21 bp):
AGCTCTTATGAGCTTCTATTT
Found at i:8113602 original size:28 final size:28
Alignment explanation
Indices: 8113554--8113745 Score: 107
Period size: 28 Copynumber: 6.6 Consensus size: 28
8113544 GCGAAGTGTC
* * **
8113554 AAGT-GCAAGATGCAAGTTGACTCCACA
1 AAGTGGCAAGATGCGAGCTGACTCTGCA
*
8113581 AAGTGGCAAGGTGCGAGCTGACTCTGCA
1 AAGTGGCAAGATGCGAGCTGACTCTGCA
* * * * *
8113609 AAGAGGCAAGATGCGAGATGGCACTGCG
1 AAGTGGCAAGATGCGAGCTGACTCTGCA
* *
8113637 AAGTGGCAGGGTGCGAGCTGACGAGCTGACTCTGTA
1 AAGTGGCA-------AGATG-CGAGCTGACTCTGCA
* * * * * *
8113673 AAGAGGCAAGATGCGAGATGGCACCGCG
1 AAGTGGCAAGATGCGAGCTGACTCTGCA
* * *
8113701 AAGTGGCAGGGTGCGAGCTGACTCTGTA
1 AAGTGGCAAGATGCGAGCTGACTCTGCA
*
8113729 AAGAGGCAAGATGCGAG
1 AAGTGGCAAGATGCGAG
8113746 ATGGCACCGC
Statistics
Matches: 118, Mismatches: 38, Indels: 17
0.68 0.22 0.10
Matches are distributed among these distances:
27 4 0.03
28 89 0.75
29 4 0.03
35 4 0.03
36 17 0.14
ACGTcount: A:0.29, C:0.19, G:0.36, T:0.15
Consensus pattern (28 bp):
AAGTGGCAAGATGCGAGCTGACTCTGCA
Found at i:8113695 original size:64 final size:60
Alignment explanation
Indices: 8113590--8113769 Score: 278
Period size: 56 Copynumber: 3.0 Consensus size: 60
8113580 AAAGTGGCAA
* *
8113590 GGTGCGAGCTGACTCTGCAAAGAGGCAAGATGCGAGATGGCACTGCGAAGTGGCAGGGTG
1 GGTGCGAGCTGACTCTGTAAAGAGGCAAGATGCGAGATGGCACCGCGAAGTGGCAGGGTG
8113650 CGAGCTGACGAGCTGACTCTGTAAAGAGGCAAGATGCGAGATGGCACCGCGAAGTGGCA----G
1 -G-G-TG-CGAGCTGACTCTGTAAAGAGGCAAGATGCGAGATGGCACCGCGAAGTGGCAGGGTG
8113710 GGTGCGAGCTGACTCTGTAAAGAGGCAAGATGCGAGATGGCACCGCGAAGTGGCAGGGTG
1 GGTGCGAGCTGACTCTGTAAAGAGGCAAGATGCGAGATGGCACCGCGAAGTGGCAGGGTG
8113770 TGAACTGCAG
Statistics
Matches: 110, Mismatches: 2, Indels: 15
0.87 0.02 0.12
Matches are distributed among these distances:
56 51 0.46
57 2 0.02
58 1 0.01
59 1 0.01
60 2 0.02
61 1 0.01
62 1 0.01
63 2 0.02
64 49 0.45
ACGTcount: A:0.26, C:0.19, G:0.40, T:0.14
Consensus pattern (60 bp):
GGTGCGAGCTGACTCTGTAAAGAGGCAAGATGCGAGATGGCACCGCGAAGTGGCAGGGTG
Found at i:8113764 original size:28 final size:28
Alignment explanation
Indices: 8113677--8113764 Score: 95
Period size: 28 Copynumber: 3.1 Consensus size: 28
8113667 TCTGTAAAGA
8113677 GGCAAGATGCGAGATGGCACCGCGAAGT
1 GGCAAGATGCGAGATGGCACCGCGAAGT
* * * * * * ** *
8113705 GGCAGGGTGCGAGCTGACTCTGTAAAGA
1 GGCAAGATGCGAGATGGCACCGCGAAGT
8113733 GGCAAGATGCGAGATGGCACCGCGAAGT
1 GGCAAGATGCGAGATGGCACCGCGAAGT
8113761 GGCA
1 GGCA
8113765 GGGTGTGAAC
Statistics
Matches: 42, Mismatches: 18, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.27, C:0.20, G:0.40, T:0.12
Consensus pattern (28 bp):
GGCAAGATGCGAGATGGCACCGCGAAGT
Found at i:8116054 original size:15 final size:15
Alignment explanation
Indices: 8116034--8116063 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8116024 CTTTTTTGGC
*
8116034 CGATTTGCTTTCTGT
1 CGATTTGCTCTCTGT
8116049 CGATTTGCTCTCTGT
1 CGATTTGCTCTCTGT
8116064 TTTACCCTCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.23, G:0.20, T:0.50
Consensus pattern (15 bp):
CGATTTGCTCTCTGT
Found at i:8117117 original size:19 final size:19
Alignment explanation
Indices: 8117093--8117129 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
8117083 GCATGACCTC
8117093 TATATGCACCTGAACGATG
1 TATATGCACCTGAACGATG
*
8117112 TATATGTACCTGAACGAT
1 TATATGCACCTGAACGAT
8117130 AATATTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (19 bp):
TATATGCACCTGAACGATG
Found at i:8119209 original size:61 final size:61
Alignment explanation
Indices: 8119143--8119333 Score: 166
Period size: 61 Copynumber: 3.2 Consensus size: 61
8119133 ATTTCATAGT
*
8119143 ATTATATATTATGATTTTAAAAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
1 ATTATATATTATGATTTTAAAAAATTAATATAAGAATATTTAATATTAAGAATTTTATTAA
* * * * *
8119204 ATTATATATT-TTA-ATTAAAATATATTTAATAGT-A-ATTATGTTAAT-TT-A-TATTTT-TCA
1 ATTATATATTATGATTTTAAAA-A-A-TTAATA-TAAGAATAT-TTAATATTAAGAATTTTATTA
*
8119261 GT
61 -A
* * *
8119263 ATCATATATTATGATTTCAATAAATTAATATAAGAATA-TTAATTATTAAGAATTTTATTAA
1 ATTATATATTATGATTTTAAAAAATTAATATAAGAATATTTAA-TATTAAGAATTTTATTAA
8119324 ATTATATATT
1 ATTATATATT
8119334 TTAATTAAAA
Statistics
Matches: 98, Mismatches: 17, Indels: 30
0.68 0.12 0.21
Matches are distributed among these distances:
57 5 0.05
58 10 0.10
59 26 0.27
60 8 0.08
61 35 0.36
62 13 0.13
63 1 0.01
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.49
Consensus pattern (61 bp):
ATTATATATTATGATTTTAAAAAATTAATATAAGAATATTTAATATTAAGAATTTTATTAA
Found at i:8119220 original size:18 final size:17
Alignment explanation
Indices: 8119194--8119228 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8119184 AATATTAAGA
*
8119194 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
8119211 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
8119229 TTAATAGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:8119240 original size:120 final size:120
Alignment explanation
Indices: 8119087--8119370 Score: 439
Period size: 120 Copynumber: 2.4 Consensus size: 120
8119077 TAATTGAAAA
* *
8119087 TATATATTTT-ATTAAATTATATTTAATAATAATTATGTTAAATTATATTTCAT-AGTATTATAT
1 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTT-ATCAGTATCATAT
* *
8119150 ATTATGATTTTAAAAAATTCATATAAGAATATTTAA-TATTAAGAATTTTATTAAAT
65 ATTATGATTTCAAAAAATTAATATAAGAATA-TTAATTATTAAGAATTTTATTAAAT
* * *
8119206 TATATATTTTAATTAAAATATATTTAATAGTAATTATGTTAATTTATATTTTTCAGTATCATATA
1 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTATCAGTATCATATA
*
8119271 TTATGATTTCAATAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAAT
66 TTATGATTTCAAAAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAAT
*
8119326 TATATATTTTAATTAAAATATATTTAATAAAAATTATGTTTAAAT
1 TATATATTTTAATTAAAATATATTTAATAATAATTATG-TTAAAT
8119371 ATGATTAAAT
Statistics
Matches: 150, Mismatches: 11, Indels: 6
0.90 0.07 0.04
Matches are distributed among these distances:
119 15 0.10
120 130 0.87
121 5 0.03
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (120 bp):
TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTATCAGTATCATATA
TTATGATTTCAAAAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAAT
Found at i:8119342 original size:18 final size:17
Alignment explanation
Indices: 8119314--8119348 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8119304 ATTATTAAGA
*
8119314 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
8119331 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
8119349 TTAATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:8119348 original size:16 final size:16
Alignment explanation
Indices: 8119314--8119368 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
8119304 ATTATTAAGA
8119314 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
8119331 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
8119347 A-TTTAATAAAAAT-T
1 ATTTTAATTAAAATAT
8119361 ATGTTTAA
1 AT-TTTAA
8119369 ATATGATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 2 0.06
15 11 0.32
16 10 0.29
17 5 0.15
18 6 0.18
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:8119605 original size:16 final size:16
Alignment explanation
Indices: 8119584--8119651 Score: 127
Period size: 16 Copynumber: 4.2 Consensus size: 16
8119574 GATTTGCTAT
8119584 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
8119600 TACACCTTTAATCCAA
1 TACACCTCTAATCCAA
8119616 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
8119632 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
8119648 TACA
1 TACA
8119652 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.38, C:0.35, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:8129357 original size:34 final size:35
Alignment explanation
Indices: 8129302--8129368 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
8129292 CAAACACTAG
*
8129302 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
8129337 AAAACATTTTCCCG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
8129369 TATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.45, C:0.15, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:8129640 original size:6 final size:6
Alignment explanation
Indices: 8129621--8129657 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
8129611 TAGGTTTCCT
* *
8129621 TATCTG TATCTA TATTTA TATCTA TATCTA TATCTA T
1 TATCTA TATCTA TATCTA TATCTA TATCTA TATCTA T
8129658 GGTTGTAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.30, C:0.14, G:0.03, T:0.54
Consensus pattern (6 bp):
TATCTA
Found at i:8131403 original size:11 final size:11
Alignment explanation
Indices: 8131381--8131427 Score: 67
Period size: 11 Copynumber: 4.2 Consensus size: 11
8131371 AACTAATCCT
8131381 CTCTCAAATTTC
1 CTCTC-AATTTC
8131393 CTCTCAATTTC
1 CTCTCAATTTC
*
8131404 CTCTAAATTTC
1 CTCTCAATTTC
*
8131415 CTCTCAAATTC
1 CTCTCAATTTC
8131426 CT
1 CT
8131428 TCCAAATTTC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
11 27 0.84
12 5 0.16
ACGTcount: A:0.23, C:0.34, G:0.00, T:0.43
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:8131414 original size:22 final size:22
Alignment explanation
Indices: 8131381--8131445 Score: 78
Period size: 22 Copynumber: 2.9 Consensus size: 22
8131371 AACTAATCCT
*
8131381 CTCTCAAATTTCCTCTCAATTTC
1 CTCT-AAATTTCCTCTCAAATTC
8131404 CTCTAAATTTCCTCTCAAATTC
1 CTCTAAATTTCCTCTCAAATTC
* *
8131426 CTTCCAAATTT-CTCTGAAAT
1 C-TCTAAATTTCCTCTCAAAT
8131446 CCATATTTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
22 26 0.68
23 12 0.32
ACGTcount: A:0.26, C:0.31, G:0.02, T:0.42
Consensus pattern (22 bp):
CTCTAAATTTCCTCTCAAATTC
Found at i:8137133 original size:22 final size:20
Alignment explanation
Indices: 8137098--8137137 Score: 62
Period size: 22 Copynumber: 1.9 Consensus size: 20
8137088 GAATAATATA
8137098 ACCATTATAATAATGATAAC
1 ACCATTATAATAATGATAAC
8137118 ACCATTGATCAATAATGATA
1 ACCATT-AT-AATAATGATA
8137138 GGGATAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.33
21 2 0.11
22 10 0.56
ACGTcount: A:0.47, C:0.15, G:0.07, T:0.30
Consensus pattern (20 bp):
ACCATTATAATAATGATAAC
Found at i:8140032 original size:36 final size:38
Alignment explanation
Indices: 8139958--8140032 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 38
8139948 TCCTTAGATT
* *
8139958 TTTTGGTATTCTTTCATGTTTTTAAAAAAATGTTAAAA
1 TTTTGGCATTCTTTCATGTTTTTAAAAAAATGTGAAAA
8139996 TTTTGGCATTCTTTCATG-TTTT-AAAAAATGTGAAAA
1 TTTTGGCATTCTTTCATGTTTTTAAAAAAATGTGAAAA
8140032 T
1 T
8140033 ATGAATAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
36 14 0.40
37 4 0.11
38 17 0.49
ACGTcount: A:0.33, C:0.07, G:0.12, T:0.48
Consensus pattern (38 bp):
TTTTGGCATTCTTTCATGTTTTTAAAAAAATGTGAAAA
Found at i:8140057 original size:18 final size:17
Alignment explanation
Indices: 8140016--8140061 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 17
8140006 CTTTCATGTT
8140016 TTAAA-AAATGTGAAAA
1 TTAAATAAATGTGAAAA
*
8140032 TATGAATAAATGTGAAAAA
1 T-TAAATAAATGTG-AAAA
8140051 TTAAATAAATG
1 TTAAATAAATG
8140062 AATTTTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
16 1 0.04
17 3 0.12
18 16 0.64
19 5 0.20
ACGTcount: A:0.59, C:0.00, G:0.13, T:0.28
Consensus pattern (17 bp):
TTAAATAAATGTGAAAA
Found at i:8140156 original size:20 final size:20
Alignment explanation
Indices: 8140126--8140180 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 20
8140116 CCCCTTTTGG
*
8140126 TTTTTTTTTTGTATTCCCTCA
1 TTTTCTTTTTGTATTCCC-CA
*
8140147 -TTTCTTTTTGTACTTCTCCA
1 TTTTCTTTTTGTA-TTCCCCA
*
8140167 TTTTTTTTTTGTAT
1 TTTTCTTTTTGTAT
8140181 CTCCTCATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 14 0.48
21 15 0.52
ACGTcount: A:0.09, C:0.16, G:0.05, T:0.69
Consensus pattern (20 bp):
TTTTCTTTTTGTATTCCCCA
Found at i:8140175 original size:21 final size:21
Alignment explanation
Indices: 8140126--8140249 Score: 69
Period size: 20 Copynumber: 6.0 Consensus size: 21
8140116 CCCCTTTTGG
8140126 TTTTTTTTTTGTATTCCCTCA
1 TTTTTTTTTTGTATTCCCTCA
* *
8140147 -TTTCTTTTTGTACTTCTC-CA
1 TTTTTTTTTTGTA-TTCCCTCA
8140167 TTTTTTTTTTGTA-TCTCCTCA
1 TTTTTTTTTTGTATTC-CCTCA
** * *
8140188 -TAATTTTTTGTTTTCCATCA
1 TTTTTTTTTTGTATTCCCTCA
** * * *
8140208 TACTTTCTTTGTATTTCCTTA
1 TTTTTTTTTTGTATTCCCTCA
* * *
8140229 -GTTTTTTTGGCATTCCCTCA
1 TTTTTTTTTTGTATTCCCTCA
8140249 T
1 T
8140250 AATTTTTTAT
Statistics
Matches: 73, Mismatches: 23, Indels: 14
0.66 0.21 0.13
Matches are distributed among these distances:
19 2 0.03
20 40 0.55
21 31 0.42
ACGTcount: A:0.12, C:0.20, G:0.06, T:0.61
Consensus pattern (21 bp):
TTTTTTTTTTGTATTCCCTCA
Found at i:8140194 original size:20 final size:20
Alignment explanation
Indices: 8140171--8140267 Score: 83
Period size: 20 Copynumber: 4.8 Consensus size: 20
8140161 TCTCCATTTT
*
8140171 TTTTTTGTATCTCCTCATAA
1 TTTTTTGTATTTCCTCATAA
*
8140191 TTTTTTGT-TTTCCATCATAC
1 TTTTTTGTATTTCC-TCATAA
*
8140211 TTTCTTTGTATTTCCT--TAGT
1 TTT-TTTGTATTTCCTCATA-A
* *
8140231 TTTTTTGGCATTCCCTCATAA
1 TTTTTT-GTATTTCCTCATAA
*
8140252 TTTTTTATATTTCCTC
1 TTTTTTGTATTTCCTC
8140268 GAATGTGTTG
Statistics
Matches: 61, Mismatches: 9, Indels: 14
0.73 0.11 0.17
Matches are distributed among these distances:
19 9 0.15
20 33 0.54
21 12 0.20
22 7 0.11
ACGTcount: A:0.15, C:0.20, G:0.06, T:0.59
Consensus pattern (20 bp):
TTTTTTGTATTTCCTCATAA
Found at i:8141513 original size:20 final size:21
Alignment explanation
Indices: 8141490--8141537 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
8141480 ATGTACATGT
8141490 GTATATATTTATAAAA-A-AAA
1 GTATATA-TTATAAAATATAAA
*
8141510 GTATACA-TATAAAATATAAA
1 GTATATATTATAAAATATAAA
8141530 GTATATAT
1 GTATATAT
8141538 AAAAAAGTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
18 7 0.30
19 1 0.04
20 15 0.65
ACGTcount: A:0.56, C:0.02, G:0.06, T:0.35
Consensus pattern (21 bp):
GTATATATTATAAAATATAAA
Found at i:8141520 original size:18 final size:16
Alignment explanation
Indices: 8141499--8141543 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 16
8141489 TGTATATATT
8141499 TATAAAAAAAAGTATACA
1 TATAAAAAAAAGTAT--A
8141517 TATAAAATATAAAGTATA
1 TATAAAA-A-AAAGTATA
8141535 TATAAAAAA
1 TATAAAAAA
8141544 GTAAAAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
16 1 0.04
17 1 0.04
18 15 0.60
19 1 0.04
20 7 0.28
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (16 bp):
TATAAAAAAAAGTATA
Found at i:8141714 original size:3 final size:3
Alignment explanation
Indices: 8141700--8141765 Score: 55
Period size: 3 Copynumber: 21.3 Consensus size: 3
8141690 AGAAAATATG
* * *
8141700 ATA ATA ATTA ATA ATA ATAA ATA AT- ATA ATA AAA ATA ATTA ATT TTA
1 ATA ATA A-TA ATA ATA AT-A ATA ATA ATA ATA ATA ATA A-TA ATA ATA
8141747 ATA ATA A-A ATA ATTA ATA A
1 ATA ATA ATA ATA A-TA ATA A
8141766 CAAGGGACCC
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
2 4 0.08
3 35 0.69
4 12 0.24
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
ATA
Found at i:8141740 original size:31 final size:32
Alignment explanation
Indices: 8141702--8141765 Score: 87
Period size: 34 Copynumber: 2.0 Consensus size: 32
8141692 AAAATATGAT
8141702 AATAATTAA-TAATAAT-AAATAATATAATAAA
1 AATAATTAATTAATAATAAAATAAT-TAATAAA
8141733 AATAATTAATTTTAATAATAAAATAATTAATAA
1 AATAATTAA--TTAATAATAAAATAATTAATAA
8141766 CAAGGGACCC
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
31 9 0.31
34 13 0.45
35 7 0.24
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (32 bp):
AATAATTAATTAATAATAAAATAATTAATAAA
Found at i:8143722 original size:132 final size:132
Alignment explanation
Indices: 8143545--8144721 Score: 1207
Period size: 133 Copynumber: 8.8 Consensus size: 132
8143535 ATGCCAGCCG
* * * **
8143545 GGGAGGTAGAATTACTGGCTTCAATATACTCCACTGCAACTTCAGGGAGGTAAAATCCACCATCT
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCT
* ** * ** ** *
8143610 TTGATCTGCTCCACTACTGTTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTGCC
66 TTGATCTGCTCCACTACTATGCAGGAAGGCAAGATCTAAAATCTTCAATCTATTCCACTGCTGCC
8143675 CA
131 CA
* * * *
8143677 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGGGGGTAAAATCCACCATAT
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCT
* *** **
8143742 TTGATCTGCTTTCTTCGATCTACT-TCGCCACCAGTATGGGAAGACAAGATCTGCTATCTTTGAT
66 TTGATCTGC--TC--C-A-CTACTAT-G----C---A--GGAAGGCAAGATCTAAAATCTTCAAT
*** *
8143806 CTACTT-CAC-GCCAACCG
115 CTA-TTCCACTGCTGCCCA
* * * * *** * **
8143823 GGGAGGTAGAATTACTGGCTTCAATATACTCTACTGCAACTTTAGGGAGATAAAATCTGCCATCT
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCT
* * * *
8143888 TCGATCTGCTCCACTA-T-TGCTTAGGGAGGCAAGATCTGAAATCTTCAATCTATTCCACTGTTG
66 TTGATCTGCTCCACTACTATGC--AGGAAGGCAAGATCTAAAATCTTCAATCTATTCCACTGCTG
8143951 CCCA
129 CCCA
* *
8143955 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCACCATCT
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCT
* * * *
8144020 TTGATATGCGT-CGCTGTCTATGCAGGAAGGCAAGATCTAAAATCTTCAGTCTATTCCACTGCTG
66 TTGATCTGC-TCCACT-ACTATGCAGGAAGGCAAGATCTAAAATCTTCAATCTATTCCACTGCTG
*
8144084 CCTA
129 CCCA
*
8144088 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCT
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCT
* ** * * * * *
8144153 TTGATCTGCTCCACTACTGTTTAGGGAGACAATATATGAAATCTTCAATCTATTCCACTGCTGCC
66 TTGATCTGCTCCACTACTATGCAGGAAGGCAAGATCTAAAATCTTCAATCTATTCCACTGCTGCC
8144218 CA
131 CA
* * * *
8144220 GGGA-AGTAGAATTATTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTACCGTT
1 GGGAGA-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATC
* * *
8144284 TTTGATCTGCTTCACTATCTATGCAGGAAGGTAAGATCTAAAATCTTCAGTCTATTCCACTGCTG
65 TTTGATCTGCTCCACTA-CTATGCAGGAAGGCAAGATCTAAAATCTTCAATCTATTCCACTGCTG
8144349 CCCA
129 CCCA
* ** *
8144353 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGAGAGGTAAAATCTGCCGTCT
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCT
** * *** * * *
8144418 TCAATCTGTTTTGCTGTCTATGCAGGAAGGCAAGATCTAAAATCTTCAGTCTATTCCACTGCTAC
66 TTGATCTGCTCCACT-ACTATGCAGGAAGGCAAGATCTAAAATCTTCAATCTATTCCACTGCTGC
*
8144483 CTA
130 CCA
* ** *
8144486 GGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCGTCT
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCT
* * * * * *
8144551 TCGACCTGCTTCGCTGTCTATGCAGGAAGGCAAGATCTAAAATCTTCAGTCTATTCCACTGCTGC
66 TTGATCTGCTCCACT-ACTATGCAGGAAGGCAAGATCTAAAATCTTCAATCTATTCCACTGCTGC
8144616 CCA
130 CCA
* * * *
8144619 GGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACCACATGGAGGTAAAATTCGCCATCT
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCT
** *
8144684 TTGATCTGCTCTGCTGTCTATGCAGGAAGGCAAGATCT
66 TTGATCTGCTCCACT-ACTATGCAGGAAGGCAAGATCT
8144722 GCTATCTTCA
Statistics
Matches: 898, Mismatches: 119, Indels: 55
0.84 0.11 0.05
Matches are distributed among these distances:
130 2 0.00
131 27 0.03
132 254 0.28
133 494 0.55
134 5 0.01
135 3 0.00
136 1 0.00
137 2 0.00
138 6 0.01
139 2 0.00
140 3 0.00
141 1 0.00
142 1 0.00
144 2 0.00
145 1 0.00
146 66 0.07
147 26 0.03
148 2 0.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (132 bp):
GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCT
TTGATCTGCTCCACTACTATGCAGGAAGGCAAGATCTAAAATCTTCAATCTATTCCACTGCTGCC
CA
Found at i:8143770 original size:278 final size:278
Alignment explanation
Indices: 8143268--8144542 Score: 1395
Period size: 278 Copynumber: 4.7 Consensus size: 278
8143258 CTGTTGTTTC
* * *
8143268 GGGAGATAGAATTACCGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCT
1 GGGAGATAGAATTACTGGCTTCAATATACTCCACTGCAACCTCAGGGAGGTAAAATCCACCATCT
* *
8143333 TTGATCTGCTCCAC-ACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTGCC
66 TTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGTTGCC
* * *
8143397 CAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGCAACCTTAGGGAGGTAAAATCCACTAT
131 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCACCAT
*
8143462 CTTTGATCTACTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATCTTTGA
196 CTTTGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATCTTTGA
8143527 TCTACTTCATGCCAGCCG
261 TCTACTTCATGCCAGCCG
* *
8143545 GGGAGGTAGAATTACTGGCTTCAATATACTCCACTGCAACTTCAGGGAGGTAAAATCCACCATCT
1 GGGAGATAGAATTACTGGCTTCAATATACTCCACTGCAACCTCAGGGAGGTAAAATCCACCATCT
* * *
8143610 TTGATCTGCTCCACTACTGTTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTGCC
66 TTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGTTGCC
*
8143675 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGGGGGTAAAATCCACCAT
131 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCACCAT
*
8143740 ATTTGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATCTTTGA
196 CTTTGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATCTTTGA
* *
8143805 TCTACTTCACGCCAACCG
261 TCTACTTCATGCCAGCCG
* * * * * **
8143823 GGGAGGTAGAATTACTGGCTTCAATATACTCTACTGCAACTTTAGGGAGATAAAATCTGCCATCT
1 GGGAGATAGAATTACTGGCTTCAATATACTCCACTGCAACCTCAGGGAGGTAAAATCCACCATCT
* * *
8143888 TCGATCTGCTCCACTATTGCTTAGGGAGGCAAGATCTGAAATCTTCAATCTATTCCACTGTTGCC
66 TTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGTTGCC
8143953 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCACCAT
131 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCACCAT
* * * * *** *
8144018 CTTTGATATGC-GTC-GCTG-TCTA--T-G----C---A--GGAAGGCAAGATCTAAAATC-TTC
196 CTTTGATCTGCTTTCTTC-GATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATCTTTG
* *
8144067 AGTCTA-TTCCACTG-CTGCCTA
260 A-TCTACTT-CA-TGCCAGCC-G
* * * *
8144088 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCT
1 GGGAGATAGAATTACTGGCTTCAATATACTCCACTGCAACCTCAGGGAGGTAAAATCCACCATCT
* * * *
8144153 TTGATCTGCTCCACTACTGTTTAGGGAGACAATATATGAAATCTTCAATCTATTCCACTGCTGCC
66 TTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGTTGCC
* * * * *
8144218 CAGGGA-AGTAGAATTATTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTACCG
131 CAGGGAGA-TAGAATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCACCA
* * * * * * * *
8144282 TTTTTGATCTGC-TTC-ACTATCTA--T-G----CAGGAAGGTAAGATCTAAAATCTTC-AGTCT
195 TCTTTGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGA-C-AAGATCTGCTA-TCT
* * * *
8144337 AT--TCCACTGC-TG-C--CCA
257 TTGATCTACTTCATGCCAGCCG
* * * * ** *
8144353 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGAGAGGTAAAATCTGCCGTCT
1 GGGAGATAGAATTACTGGCTTCAATATACTCCACTGCAACCTCAGGGAGGTAAAATCCACCATCT
** ** * * * * * *
8144418 TCAATCTG-T--TTTGCTGTCTATGCAGGAAGGCAAGATCTAAAATCTTCAGTCTATTCCACTGC
66 TTGATCTGCTCCACTACTG-CT-T--AGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGT
* * * * *
8144480 TACCTAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATC
127 TGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATC
8144543 TGCCGTCTTC
Statistics
Matches: 881, Mismatches: 94, Indels: 57
0.85 0.09 0.06
Matches are distributed among these distances:
262 4 0.00
263 6 0.01
264 28 0.03
265 257 0.29
266 95 0.11
267 1 0.00
268 4 0.00
269 1 0.00
270 8 0.01
271 3 0.00
272 8 0.01
273 2 0.00
274 1 0.00
276 5 0.01
277 77 0.09
278 381 0.43
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (278 bp):
GGGAGATAGAATTACTGGCTTCAATATACTCCACTGCAACCTCAGGGAGGTAAAATCCACCATCT
TTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGTTGCC
CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCACCAT
CTTTGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATCTTTGA
TCTACTTCATGCCAGCCG
Found at i:8144307 original size:265 final size:265
Alignment explanation
Indices: 8143823--8144694 Score: 1237
Period size: 265 Copynumber: 3.3 Consensus size: 265
8143813 ACGCCAACCG
* * * * *** *
8143823 GGGAGGTAGAATTACTGGCTTCAATATACTCTACTGCAACTTTAGGGAGATAAAATCTGCCATCT
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCT
* * *
8143888 TCGATCTGCTCCACTATTGCTTAGGGAGGCAAGATCTGAAATCTTCAATCTATTCCACTGTTGCC
66 TCGATCTGCTCCACTACTGTTTAGGGAGGCAAGATCTGAAATCTTCAATCTATTCCACTGCTGCC
* * * * *
8143953 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCCACCAT
131 CAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTACCGT
* *
8144018 CTTTGATATGCGTCGCTGTCTATGCAGGAAGGCAAGATCTAAAATCTTCAGTCTATTCCACTGCT
196 CTTTGATCTGCTTCGCTGTCTATGCAGGAAGGCAAGATCTAAAATCTTCAGTCTATTCCACTGCT
*
8144083 GCCTA
261 GCCCA
*
8144088 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAAT-TCACCATC
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCT-GCCATC
* * * *
8144152 TTTGATCTGCTCCACTACTGTTTAGGGAGACAATATATGAAATCTTCAATCTATTCCACTGCTGC
65 TTCGATCTGCTCCACTACTGTTTAGGGAGGCAAGATCTGAAATCTTCAATCTATTCCACTGCTGC
8144217 CCAGGGA-AGTAGAATTATTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTACC
130 CCAGGGAGA-TAGAATTATTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTACC
* * * *
8144281 GTTTTTGATCTGCTTCACTATCTATGCAGGAAGGTAAGATCTAAAATCTTCAGTCTATTCCACTG
194 GTCTTTGATCTGCTTCGCTGTCTATGCAGGAAGGCAAGATCTAAAATCTTCAGTCTATTCCACTG
8144346 CTGCCCA
259 CTGCCCA
* *
8144353 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGAGAGGTAAAATCTGCCGTCT
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCT
* * *** * * ** * * * *
8144418 TCAATCTGTTTTGCTGTCTATGCAGGAAGGCAAGATCTAAAATCTTCAGTCTATTCCACTGCTAC
66 TCGATCTGCTCCACT-ACTGTTTAGGGAGGCAAGATCTGAAATCTTCAATCTATTCCACTGCTGC
* *
8144483 CTAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCG
130 CCAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTACCG
* *
8144548 TCTTCGACCTGCTTCGCTGTCTATGCAGGAAGGCAAGATCTAAAATCTTCAGTCTATTCCACTGC
195 TCTTTGATCTGCTTCGCTGTCTATGCAGGAAGGCAAGATCTAAAATCTTCAGTCTATTCCACTGC
8144613 TGCCCA
260 TGCCCA
* *
8144619 GGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACCACATGGAGGTAAAAT-TCGCCATC
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCT-GCCATC
*
8144683 TTTGATCTGCTC
65 TTCGATCTGCTC
8144695 TGCTGTCTAT
Statistics
Matches: 537, Mismatches: 64, Indels: 11
0.88 0.10 0.02
Matches are distributed among these distances:
264 2 0.00
265 303 0.56
266 231 0.43
267 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (265 bp):
GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCT
TCGATCTGCTCCACTACTGTTTAGGGAGGCAAGATCTGAAATCTTCAATCTATTCCACTGCTGCC
CAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTACCGT
CTTTGATCTGCTTCGCTGTCTATGCAGGAAGGCAAGATCTAAAATCTTCAGTCTATTCCACTGCT
GCCCA
Found at i:8150407 original size:20 final size:20
Alignment explanation
Indices: 8150362--8150407 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 20
8150352 ATATTTACAA
*
8150362 AAAAAGTATATATATAAAAT
1 AAAAAGTATATATAAAAAAT
8150382 ATAAAA-TATATATAAAAAAGT
1 A-AAAAGTATATATAAAAAA-T
8150403 AAAAA
1 AAAAA
8150408 AAACAAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 17 0.74
21 6 0.26
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.26
Consensus pattern (20 bp):
AAAAAGTATATATAAAAAAT
Found at i:8150565 original size:3 final size:3
Alignment explanation
Indices: 8150551--8150616 Score: 55
Period size: 3 Copynumber: 21.3 Consensus size: 3
8150541 AGAAAATATG
* * *
8150551 ATA ATA ATTA ATA ATA ATAA ATA AT- ATA ATA AAA ATA ATTA ATT TTA
1 ATA ATA A-TA ATA ATA AT-A ATA ATA ATA ATA ATA ATA A-TA ATA ATA
8150598 ATA ATA A-A ATA ATTA ATA A
1 ATA ATA ATA ATA A-TA ATA A
8150617 CAAGGGACCC
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
2 4 0.08
3 35 0.69
4 12 0.24
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
ATA
Found at i:8150591 original size:31 final size:32
Alignment explanation
Indices: 8150553--8150616 Score: 87
Period size: 34 Copynumber: 2.0 Consensus size: 32
8150543 AAAATATGAT
8150553 AATAATTAA-TAATAAT-AAATAATATAATAAA
1 AATAATTAATTAATAATAAAATAAT-TAATAAA
8150584 AATAATTAATTTTAATAATAAAATAATTAATAA
1 AATAATTAA--TTAATAATAAAATAATTAATAA
8150617 CAAGGGACCC
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
31 9 0.31
34 13 0.45
35 7 0.24
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (32 bp):
AATAATTAATTAATAATAAAATAATTAATAAA
Found at i:8151765 original size:19 final size:19
Alignment explanation
Indices: 8151736--8151785 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 19
8151726 TTTTTGTACT
*
8151736 TCATATGTTTTTGTATCCCC
1 TCATAT-TTTTAGTATCCCC
*
8151756 TCATAATTTTTAGTATTCCC
1 TCAT-ATTTTTAGTATCCCC
8151776 TCATATTTTT
1 TCATATTTTT
8151786 CTATATCCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 6 0.22
20 19 0.70
21 2 0.07
ACGTcount: A:0.20, C:0.20, G:0.06, T:0.54
Consensus pattern (19 bp):
TCATATTTTTAGTATCCCC
Found at i:8151766 original size:20 final size:18
Alignment explanation
Indices: 8151718--8151805 Score: 63
Period size: 20 Copynumber: 4.6 Consensus size: 18
8151708 TTGGTTTTCT
8151718 CTCATAATTTTTTGTA--C
1 CTCAT-ATTTTTTGTATCC
*
8151735 TTCATATGTTTTTGTATCCC
1 CTCATAT-TTTTTGTAT-CC
*
8151755 CTCATAATTTTTAGTATTCC
1 CTCAT-ATTTTTTGTA-TCC
*
8151775 CTCATATTTTTCTATATCC
1 CTCATATTTTT-TGTATCC
*
8151794 TTTCATATTTTT
1 -CTCATATTTTT
8151806 GGTACTTATT
Statistics
Matches: 57, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
16 2 0.04
17 12 0.21
19 9 0.16
20 31 0.54
21 3 0.05
ACGTcount: A:0.20, C:0.19, G:0.05, T:0.56
Consensus pattern (18 bp):
CTCATATTTTTTGTATCC
Found at i:8151842 original size:20 final size:19
Alignment explanation
Indices: 8151762--8151844 Score: 55
Period size: 19 Copynumber: 4.3 Consensus size: 19
8151752 CCCCTCATAA
* *
8151762 TTTTTAGTATTCCCTCATAT
1 TTTTTAGTATT-CTTTATAT
*
8151782 TTTTCTA-TATCCTTTCATA-
1 TTTT-TAGTATTCTTT-ATAT
* *
8151801 TTTTTGGTACTTATTTAT-T
1 TTTTTAGTA-TTCTTTATAT
8151820 TTTTTAGTATTCTCTTATAT
1 TTTTTAGTATTCT-TTATAT
8151840 TTTTT
1 TTTTT
8151845 TGTACACCCT
Statistics
Matches: 48, Mismatches: 8, Indels: 14
0.69 0.11 0.20
Matches are distributed among these distances:
18 4 0.08
19 22 0.46
20 20 0.42
21 2 0.04
ACGTcount: A:0.18, C:0.13, G:0.05, T:0.64
Consensus pattern (19 bp):
TTTTTAGTATTCTTTATAT
Found at i:8152370 original size:20 final size:20
Alignment explanation
Indices: 8152347--8152432 Score: 64
Period size: 21 Copynumber: 4.2 Consensus size: 20
8152337 AGCTAAGTAA
8152347 AAAAAATATGAGAGAATACC
1 AAAAAATATGAGAGAATACC
* * *
8152367 AAAAAAACATGATAAAATACC
1 -AAAAAATATGAGAGAATACC
* * **
8152388 AAAAAGATATGAAAGAGTTTC
1 AAAAA-ATATGAGAGAATACC
* * *
8152409 AAAAATTATGAGGGACTACC
1 AAAAAATATGAGAGAATACC
8152429 AAAA
1 AAAA
8152433 GTCACAAGAA
Statistics
Matches: 49, Mismatches: 15, Indels: 3
0.73 0.22 0.04
Matches are distributed among these distances:
20 18 0.37
21 31 0.63
ACGTcount: A:0.58, C:0.10, G:0.14, T:0.17
Consensus pattern (20 bp):
AAAAAATATGAGAGAATACC
Found at i:8152370 original size:21 final size:21
Alignment explanation
Indices: 8152346--8152399 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
8152336 GAGCTAAGTA
*
8152346 AAAAAAATATGAGAGAATACC
1 AAAAAAATATGAGAAAATACC
* *
8152367 AAAAAAACATGATAAAATACC
1 AAAAAAATATGAGAAAATACC
*
8152388 AAAAAGATATGA
1 AAAAAAATATGA
8152400 AAGAGTTTCA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.65, C:0.09, G:0.11, T:0.15
Consensus pattern (21 bp):
AAAAAAATATGAGAAAATACC
Found at i:8152522 original size:17 final size:17
Alignment explanation
Indices: 8152469--8152523 Score: 65
Period size: 17 Copynumber: 3.1 Consensus size: 17
8152459 CAGACATGAG
8152469 GGAGTACCAAAAATTAT
1 GGAGTACCAAAAATTAT
*
8152486 GAGAGATTACAAAAAATTAT
1 G-GAG--TACCAAAAATTAT
*
8152506 GGAGTACCAACAATTAT
1 GGAGTACCAAAAATTAT
8152523 G
1 G
8152524 AGGGACTATC
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
17 13 0.41
18 3 0.09
19 3 0.09
20 13 0.41
ACGTcount: A:0.47, C:0.11, G:0.18, T:0.24
Consensus pattern (17 bp):
GGAGTACCAAAAATTAT
Found at i:8153945 original size:80 final size:80
Alignment explanation
Indices: 8153812--8153971 Score: 293
Period size: 80 Copynumber: 2.0 Consensus size: 80
8153802 AAAACTCATT
*
8153812 TTAATAAAATGTTAGACTTATTAAAACAATACTTTTCGATCTACAAAATCCAAGAAATGGGTTCG
1 TTAATAAAATGTTAGACTTATTAAAAAAATACTTTTCGATCTACAAAATCCAAGAAATGGGTTCG
*
8153877 GGAGTTGGTTACGCA
66 GGAGTCGGTTACGCA
*
8153892 TTAATAAAATGTTAGACTTATTAAAAAAATACTTTTCGATCTACAAAATCCAAGAAATTGGTTCG
1 TTAATAAAATGTTAGACTTATTAAAAAAATACTTTTCGATCTACAAAATCCAAGAAATGGGTTCG
8153957 GGAGTCGGTTACGCA
66 GGAGTCGGTTACGCA
8153972 CGAGGAAGGA
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
80 77 1.00
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (80 bp):
TTAATAAAATGTTAGACTTATTAAAAAAATACTTTTCGATCTACAAAATCCAAGAAATGGGTTCG
GGAGTCGGTTACGCA
Found at i:8154545 original size:14 final size:14
Alignment explanation
Indices: 8154528--8154562 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
8154518 AATATTGTAA
8154528 TAATAATATAATAT
1 TAATAATATAATAT
*
8154542 TAATATTATAATAT
1 TAATAATATAATAT
8154556 TAATAAT
1 TAATAAT
8154563 CGTATTATAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
TAATAATATAATAT
Found at i:8154810 original size:3 final size:3
Alignment explanation
Indices: 8154797--8154827 Score: 53
Period size: 3 Copynumber: 10.0 Consensus size: 3
8154787 TATAAAAAAG
8154797 TAA TAAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA
8154828 AGACATAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 24 0.89
4 3 0.11
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:8156470 original size:44 final size:44
Alignment explanation
Indices: 8156417--8156875 Score: 370
Period size: 44 Copynumber: 10.5 Consensus size: 44
8156407 ACTTTCACTA
* * * *
8156417 CAACTTCAGGGAGATAAGATTTGTACCTTTAATCTACTCTGCTG
1 CAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCTACTG
* * * *
8156461 CAGCTTCAGGGAGATAAGATTTACTATCTTCAATCTGCTCCACTG
1 CAACTTCAGGGAGATAAGATTT-GTAGCTTCAATCTGCTCTACTG
* * *
8156506 CAAATTTAGGGAGATAAGATTTGCAGCTTCAATCTGCTCTACTG
1 CAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCTACTG
** * *
8156550 CAACTTCAAAGAGATAAGA--T-T--C-ACAATCTGCTCTACTA
1 CAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCTACTG
* * * *
8156588 CAACTTCAAGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGGTCCA-TG
1 CAACTTCAGGGAGATAAGA----T---TTGTAGCTTCAATCTGCTCTACTG
*
8156638 CAACTTTAGGGAGATAAGATTTGTAGCTTCAATCTGCTCTACTG
1 CAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCTACTG
* * * * *
8156682 CAACTTCAGAGAGATAAGA-----ATC-ACAATATGCTCAACTG
1 CAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCTACTG
* * * *
8156720 CAACTTCAGAGAGATAAGGTTTGTAACTTCAATC-GCTTTACTG
1 CAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCTACTG
* * * * * *
8156763 CAACTTTAGAGAGATAAGATTTGCTATCTTCAATCTGTTCCATTG
1 CAACTTCAGGGAGATAAGATTTG-TAGCTTCAATCTGCTCTACTG
* * * * *
8156808 CAATTTTAAGGAGATAAGATTTGTAGCTTTAATCTGCTCCACTG
1 CAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCTACTG
*
8156852 CAACTTCAGAGAGATAAGATTTGT
1 CAACTTCAGGGAGATAAGATTTGT
8156876 CACAATAACT
Statistics
Matches: 330, Mismatches: 62, Indels: 46
0.75 0.14 0.11
Matches are distributed among these distances:
38 63 0.19
39 3 0.01
42 1 0.00
43 48 0.15
44 124 0.38
45 60 0.18
46 1 0.00
47 1 0.00
48 1 0.00
50 19 0.06
51 9 0.03
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (44 bp):
CAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCTACTG
Found at i:8156586 original size:38 final size:38
Alignment explanation
Indices: 8156535--8156608 Score: 130
Period size: 38 Copynumber: 1.9 Consensus size: 38
8156525 TTTGCAGCTT
*
8156535 CAATCTGCTCTACTGCAACTTCAAAGAGATAAGATTCA
1 CAATCTGCTCTACTACAACTTCAAAGAGATAAGATTCA
*
8156573 CAATCTGCTCTACTACAACTTCAAGGAGATAAGATT
1 CAATCTGCTCTACTACAACTTCAAAGAGATAAGATT
8156609 TGTAACTTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (38 bp):
CAATCTGCTCTACTACAACTTCAAAGAGATAAGATTCA
Found at i:8156846 original size:132 final size:126
Alignment explanation
Indices: 8156447--8156875 Score: 427
Period size: 132 Copynumber: 3.3 Consensus size: 126
8156437 TTGTACCTTT
* * * * * * *
8156447 AATCTACTCTGCTGCAGCTTCAGGGAGATAAGATTTACTATCTTCAATCTGCTCCACTGCAAATT
1 AATCTGCTCTACTGCAACTTCAGAGAGATAAGATTT-GTAACTTCAATCTGCTCCACTGCAACTT
* *
8156512 TAGGGAGATAAGATTTGC-AGCTTCAATCTGCTCTACTGCAACTTCAAAGAGATAAGATTCAC
65 TAGGGAGATAAGATTTGCTAGCTTCAATCTGCTCTACTGCAA-TTTAAGGAGATAAGATTCAC
* *
8156574 AATCTGCTCTACTACAACTTCA-AGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGGTCCA-T
1 AATCTGCTCTACTGCAACTTCAGA-GAGATAAGATTTGTAAC-T-T--C---AATCTGCTCCACT
* *
8156637 GCAACTTTAGGGAGATAAGATTTG-TAGCTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAGA
58 GCAACTTTAGGGAGATAAGATTTGCTAGCTTCAATCTGCTCTACTGCAATTTAAG-GAGATAAGA
*
8156701 ATCAC
122 TTCAC
* * * **
8156706 AATATGCTCAACTGCAACTTCAGAGAGATAAGGTTTGTAACTTCAATC-GCTTTACTGCAACTTT
1 AATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTAACTTCAATCTGCTCCACTGCAACTTT
* * * * * *
8156770 AGAGAGATAAGATTTGCTATCTTCAATCTGTTCCATTGCAATTTTAAGGAGATAAGATTTGTAGC
66 AGGGAGATAAGATTTGCTAGCTTCAATCTGCTCTACTGCAA-TTTAAGGAGATAAGA-TT-CA-C
*
8156835 TTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGT
1 ---AATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGT
8156876 CACAATAACT
Statistics
Matches: 249, Mismatches: 33, Indels: 35
0.79 0.10 0.11
Matches are distributed among these distances:
124 3 0.01
125 28 0.11
126 32 0.13
127 36 0.14
128 3 0.01
129 1 0.00
130 2 0.01
131 3 0.01
132 130 0.52
133 11 0.04
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (126 bp):
AATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTAACTTCAATCTGCTCCACTGCAACTTT
AGGGAGATAAGATTTGCTAGCTTCAATCTGCTCTACTGCAATTTAAGGAGATAAGATTCAC
Found at i:8158990 original size:79 final size:80
Alignment explanation
Indices: 8158854--8159010 Score: 237
Period size: 79 Copynumber: 2.0 Consensus size: 80
8158844 AAACTCATTT
* *
8158854 TAATAAAATGTTAGACTTATTAAAACGATACTTTTCGATCTACAAAATCTAGAAAATGAG-TCGG
1 TAATAAAATGTTAAACTTATTAAAACGATACTTTTCGATCTACAAAATCTAGAAAATGAGTTCAG
8158918 GAGTCGGTTACGCAG
66 GAGTCGGTTACGCAG
* * * *
8158933 TAATAAAATGTTAAACTTATTAAAACGATACTTTTTGATCTACAAAAT-TCAGGAAATGGGTTTA
1 TAATAAAATGTTAAACTTATTAAAACGATACTTTTCGATCTACAAAATCT-AGAAAATGAGTTCA
8158997 GGAGTCGGTTACGC
65 GGAGTCGGTTACGC
8159011 GCGAGGAAGG
Statistics
Matches: 70, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 54 0.77
80 15 0.21
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (80 bp):
TAATAAAATGTTAAACTTATTAAAACGATACTTTTCGATCTACAAAATCTAGAAAATGAGTTCAG
GAGTCGGTTACGCAG
Found at i:8159601 original size:12 final size:12
Alignment explanation
Indices: 8159584--8159609 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8159574 AATATAATTA
8159584 TAATAATCATAT
1 TAATAATCATAT
8159596 TAATAATCATAT
1 TAATAATCATAT
8159608 TA
1 TA
8159610 TAGTAATGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TAATAATCATAT
Found at i:8159931 original size:25 final size:26
Alignment explanation
Indices: 8159871--8159922 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
8159861 ACTAAAAGAG
* *
8159871 AAAAATAAAATAAAAAAACTCTCAAT
1 AAAAAGAAAATAAAAAAACTCTAAAT
*
8159897 AAAAAGAAAATAAAAAAA-TTTAAAT
1 AAAAAGAAAATAAAAAAACTCTAAAT
8159922 A
1 A
8159923 TTAAAAAAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.73, C:0.06, G:0.02, T:0.19
Consensus pattern (26 bp):
AAAAAGAAAATAAAAAAACTCTAAAT
Found at i:8160197 original size:16 final size:16
Alignment explanation
Indices: 8160176--8160210 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
8160166 GAAATGCGCG
8160176 AAAAGAACTAGAGACT
1 AAAAGAACTAGAGACT
* *
8160192 AAAAGAATTAGGGACT
1 AAAAGAACTAGAGACT
8160208 AAA
1 AAA
8160211 TGGGACATTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.57, C:0.09, G:0.20, T:0.14
Consensus pattern (16 bp):
AAAAGAACTAGAGACT
Found at i:8163665 original size:24 final size:24
Alignment explanation
Indices: 8163638--8163689 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
8163628 TTAGTAAGTC
*
8163638 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
8163662 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
8163686 AAAT
1 AAAT
8163690 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:8189908 original size:18 final size:18
Alignment explanation
Indices: 8189882--8189916 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8189872 ATTGTATTTT
*
8189882 TATCGATACCATCTTTGA
1 TATCAATACCATCTTTGA
*
8189900 TATCAATACCATTTTTG
1 TATCAATACCATCTTTG
8189917 CATTCTTACT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.20, G:0.09, T:0.43
Consensus pattern (18 bp):
TATCAATACCATCTTTGA
Found at i:8189998 original size:20 final size:21
Alignment explanation
Indices: 8189949--8190003 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
8189939 AAACAATCAT
* *
8189949 AAAAAGTATCGATATCTTTTC
1 AAAAGGTATCGATACCTTTTC
8189970 AAAAGGTATCGATACCTTTT-
1 AAAAGGTATCGATACCTTTTC
**
8189990 ACCAGGTATCGATA
1 AAAAGGTATCGATA
8190004 AAATGTTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 12 0.40
21 18 0.60
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (21 bp):
AAAAGGTATCGATACCTTTTC
Found at i:8193608 original size:26 final size:26
Alignment explanation
Indices: 8193572--8193624 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
8193562 ATAGAGGATA
8193572 CAATCCATTCTTTAACACCTATAACC
1 CAATCCATTCTTTAACACCTATAACC
8193598 CAATCCATTCTTTAACACCTATAACC
1 CAATCCATTCTTTAACACCTATAACC
8193624 C
1 C
8193625 GGTGGCATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.34, C:0.36, G:0.00, T:0.30
Consensus pattern (26 bp):
CAATCCATTCTTTAACACCTATAACC
Found at i:8195881 original size:17 final size:17
Alignment explanation
Indices: 8195859--8195891 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8195849 TATATTTTTA
*
8195859 TTTTTAATCACATATAC
1 TTTTTAATCAAATATAC
8195876 TTTTTAATCAAATATA
1 TTTTTAATCAAATATA
8195892 TATTAAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.48
Consensus pattern (17 bp):
TTTTTAATCAAATATAC
Found at i:8199359 original size:19 final size:20
Alignment explanation
Indices: 8199315--8199364 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
8199305 ATCATGTTCA
8199315 TATTTTTA-ACATAATTTAAT
1 TATTTTTATA-ATAATTTAAT
8199335 TA-TTTTATAAT-ATTTAAT
1 TATTTTTATAATAATTTAAT
*
8199353 TATTTTTGTAAT
1 TATTTTTATAAT
8199365 TTGAAATTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 9 0.33
19 15 0.56
20 3 0.11
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (20 bp):
TATTTTTATAATAATTTAAT
Found at i:8199403 original size:13 final size:13
Alignment explanation
Indices: 8199369--8199405 Score: 65
Period size: 14 Copynumber: 2.8 Consensus size: 13
8199359 TGTAATTTGA
8199369 AATTTGAAAACTT
1 AATTTGAAAACTT
8199382 AAGTTTGAAAACTT
1 AA-TTTGAAAACTT
8199396 AATTTGAAAA
1 AATTTGAAAA
8199406 TTTGGAAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 10 0.43
14 13 0.57
ACGTcount: A:0.49, C:0.05, G:0.11, T:0.35
Consensus pattern (13 bp):
AATTTGAAAACTT
Found at i:8199685 original size:34 final size:34
Alignment explanation
Indices: 8199642--8199714 Score: 128
Period size: 34 Copynumber: 2.1 Consensus size: 34
8199632 TTTACTTTCT
*
8199642 TTTCTTGCAGGGAATCTCTCCTGTTCACACATCA
1 TTTCTTGCAGGGAATATCTCCTGTTCACACATCA
*
8199676 TTTCTTGCAGGGAATATCTCCTGTTCATACATCA
1 TTTCTTGCAGGGAATATCTCCTGTTCACACATCA
8199710 TTTCT
1 TTTCT
8199715 GATATTATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.21, C:0.26, G:0.14, T:0.40
Consensus pattern (34 bp):
TTTCTTGCAGGGAATATCTCCTGTTCACACATCA
Found at i:8202557 original size:20 final size:23
Alignment explanation
Indices: 8202522--8202566 Score: 69
Period size: 20 Copynumber: 2.1 Consensus size: 23
8202512 GAACAAATTG
8202522 TTGATTCTATTTCTTTTTTG-AT
1 TTGATTCTATTTCTTTTTTGTAT
8202544 TTGA-TCTA-TTCTTTTTTGTAT
1 TTGATTCTATTTCTTTTTTGTAT
8202565 TT
1 TT
8202567 CTCTTTTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 10 0.45
21 8 0.36
22 4 0.18
ACGTcount: A:0.13, C:0.09, G:0.09, T:0.69
Consensus pattern (23 bp):
TTGATTCTATTTCTTTTTTGTAT
Found at i:8206451 original size:7 final size:7
Alignment explanation
Indices: 8206439--8206481 Score: 52
Period size: 7 Copynumber: 6.1 Consensus size: 7
8206429 AAAATTAATA
8206439 TATAAAT
1 TATAAAT
8206446 TATAAAT
1 TATAAAT
8206453 TATAAAT
1 TATAAAT
*
8206460 AATATAAT
1 TATA-AAT
*
8206468 TATATAT
1 TATAAAT
8206475 TA-AAAT
1 TATAAAT
8206481 T
1 T
8206482 TATCAAACTA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
6 4 0.13
7 21 0.68
8 6 0.19
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (7 bp):
TATAAAT
Found at i:8206468 original size:22 final size:22
Alignment explanation
Indices: 8206438--8206480 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
8206428 AAAAATTAAT
8206438 ATATAAATTATAAATTATAAATA
1 ATATAAATTATAAATTA-AAATA
*
8206461 ATAT-AATTATATATTAAAAT
1 ATATAAATTATAAATTAAAAT
8206481 TTATCAAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 11 0.58
23 4 0.21
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
ATATAAATTATAAATTAAAATA
Found at i:8215319 original size:11 final size:10
Alignment explanation
Indices: 8215295--8215319 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
8215285 AAGTAACGTC
8215295 TTTTTCGTAG
1 TTTTTCGTAG
8215305 TTTTTCGTAG
1 TTTTTCGTAG
8215315 TTTTT
1 TTTTT
8215320 AGATTTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.08, C:0.08, G:0.16, T:0.68
Consensus pattern (10 bp):
TTTTTCGTAG
Found at i:8224996 original size:37 final size:37
Alignment explanation
Indices: 8224935--8225013 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
8224925 TTATTACGAA
* * * *
8224935 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
*
8224972 GTCTTACCCAGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
8225009 GTCTT
1 GTCTT
8225014 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
Found at i:8225210 original size:47 final size:47
Alignment explanation
Indices: 8225132--8226092 Score: 1652
Period size: 47 Copynumber: 20.2 Consensus size: 47
8225122 CCCTTCGGGA
* * * * * *
8225132 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
8225179 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8225226 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
8225273 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8225320 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
8225367 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
8225414 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8225461 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
8225508 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
8225557 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8225604 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
8225651 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
8225700 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
8225747 CTTATCACATATATACACTTTCACATTCATCACATCGGTCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
8225794 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
8225843 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8225890 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8225937 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
8225986 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
8226035 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8226082 CTTATCACATA
1 CTTATCACATA
8226093 GAATCCTAAA
Statistics
Matches: 873, Mismatches: 33, Indels: 16
0.95 0.04 0.02
Matches are distributed among these distances:
47 641 0.73
49 232 0.27
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:8225567 original size:143 final size:143
Alignment explanation
Indices: 8225132--8226092 Score: 1723
Period size: 143 Copynumber: 6.7 Consensus size: 143
8225122 CCCTTCGGGA
* ** * * * * * *
8225132 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATACAC
8225197 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
8225260 TCGGCCATTAGGC
131 TCGGCTATTAGGC
* *
8225273 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATACAC
8225338 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
8225401 TCGGCTATTAGGC
131 TCGGCTATTAGGC
8225414 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATACAC
8225479 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
8225544 TCGGCTATTAGGC
131 TCGGCTATTAGGC
8225557 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATACAC
8225622 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
8225687 TCGGCTATTAGGC
131 TCGGCTATTAGGC
8225700 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
8225765 TTTCACATTCATCACATCGGTCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
8225830 TCGGCTATTAGGC
131 TCGGCTATTAGGC
8225843 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATACAC
8225908 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
8225973 TCGGCCATTAGGC
131 TCGGCTATTAGGC
* *
8225986 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATAC
*
8226051 ACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
8226093 GAATCCTAAA
Statistics
Matches: 800, Mismatches: 16, Indels: 4
0.98 0.02 0.00
Matches are distributed among these distances:
141 233 0.29
143 473 0.59
145 94 0.12
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TCGGCTATTAGGC
Found at i:8234840 original size:32 final size:33
Alignment explanation
Indices: 8234779--8234841 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
8234769 GGTTCAGTGG
* *
8234779 GCTGGTGGAGGGCTGACAGTAGGCAACACCAGT
1 GCTGGTGGAGGACTGACAGTAGACAACACCAGT
*
8234812 GCTGGTGGAGGACTGA-AGTAGACGACACCA
1 GCTGGTGGAGGACTGACAGTAGACAACACCA
8234842 ATTGATGTGA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 12 0.44
33 15 0.56
ACGTcount: A:0.27, C:0.21, G:0.38, T:0.14
Consensus pattern (33 bp):
GCTGGTGGAGGACTGACAGTAGACAACACCAGT
Found at i:8238718 original size:35 final size:35
Alignment explanation
Indices: 8238679--8238763 Score: 100
Period size: 35 Copynumber: 2.4 Consensus size: 35
8238669 CTTTATTTGG
* *
8238679 TGTGTTTTGGAGGGGCTAGCTCTTATAAGTATTGA
1 TGTGTTTTGGAGGGACTAGCTCTTATAAGCATTGA
* ** *
8238714 TGTGTTTCGGTTGGACTAGCTCTTATAAGCATTGG
1 TGTGTTTTGGAGGGACTAGCTCTTATAAGCATTGA
8238749 TGT-TTTTCGGAGGGA
1 TGTGTTTT-GGAGGGA
8238764 TTGGCTCGTG
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
34 3 0.08
35 37 0.93
ACGTcount: A:0.18, C:0.11, G:0.32, T:0.40
Consensus pattern (35 bp):
TGTGTTTTGGAGGGACTAGCTCTTATAAGCATTGA
Found at i:8239625 original size:15 final size:16
Alignment explanation
Indices: 8239599--8239642 Score: 54
Period size: 15 Copynumber: 2.7 Consensus size: 16
8239589 ATAGCCTGAG
*
8239599 ACACCGGTGTGTGACTC
1 ACACC-GTGTGTGACAC
8239616 A-ACCGTGTGTGACAC
1 ACACCGTGTGTGACAC
8239631 ACGACCGTGTGT
1 AC-ACCGTGTGT
8239643 CCCGTGTAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 11 0.46
16 3 0.12
17 10 0.42
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (16 bp):
ACACCGTGTGTGACAC
Found at i:8244311 original size:17 final size:17
Alignment explanation
Indices: 8244291--8244324 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8244281 TAAAATATTA
* *
8244291 ATAATTATTTTAAAAAT
1 ATAAATATTCTAAAAAT
8244308 ATAAATATTCTAAAAAT
1 ATAAATATTCTAAAAAT
8244325 TAAGTATGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (17 bp):
ATAAATATTCTAAAAAT
Found at i:8244486 original size:9 final size:9
Alignment explanation
Indices: 8244468--8244526 Score: 50
Period size: 9 Copynumber: 6.4 Consensus size: 9
8244458 TAATAGTGAA
8244468 ATAA-TTTT
1 ATAATTTTT
8244476 ATAATTTTT
1 ATAATTTTT
*
8244485 ATTATTTTTT
1 A-TAATTTTT
8244495 ATATATTTTT
1 ATA-ATTTTT
* *
8244505 AGAATTATT
1 ATAATTTTT
8244514 A-ATATTTTT
1 ATA-ATTTTT
8244523 ATAA
1 ATAA
8244527 AATTTAAGGT
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
8 5 0.12
9 20 0.49
10 16 0.39
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.63
Consensus pattern (9 bp):
ATAATTTTT
Found at i:8244531 original size:29 final size:29
Alignment explanation
Indices: 8244472--8244527 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 29
8244462 AGTGAAATAA
* * * *
8244472 TTTTATAATTTTTATTATTTTTTATATAT
1 TTTTAGAATTATTAATATTTTTTATAAAT
8244501 TTTTAGAATTATTAATA-TTTTTATAAA
1 TTTTAGAATTATTAATATTTTTTATAAA
8244528 ATTTAAGGTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
28 9 0.39
29 14 0.61
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (29 bp):
TTTTAGAATTATTAATATTTTTTATAAAT
Found at i:8244669 original size:8 final size:8
Alignment explanation
Indices: 8244656--8244702 Score: 69
Period size: 8 Copynumber: 5.8 Consensus size: 8
8244646 ATTTTTTTGA
8244656 ATTTTTCAT
1 ATTTTT-AT
8244665 A-TTTTAT
1 ATTTTTAT
8244672 ATTTTTAT
1 ATTTTTAT
8244680 ATTTTTAT
1 ATTTTTAT
8244688 ATTTTTTAT
1 A-TTTTTAT
8244697 ATTTTT
1 ATTTTT
8244703 GCACTCGTCT
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
7 3 0.08
8 24 0.67
9 9 0.25
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.74
Consensus pattern (8 bp):
ATTTTTAT
Found at i:8244821 original size:11 final size:11
Alignment explanation
Indices: 8244790--8244836 Score: 60
Period size: 12 Copynumber: 4.1 Consensus size: 11
8244780 TTAATTAATA
8244790 TATTTTTATTAAT
1 TATTTTTA--AAT
8244803 TA-TTTTAAAT
1 TATTTTTAAAT
8244813 TATTTTTAAATT
1 TATTTTTAAA-T
8244825 TATTTTTAAAT
1 TATTTTTAAAT
8244836 T
1 T
8244837 TTTGCTGATA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
10 5 0.16
11 9 0.28
12 16 0.50
13 2 0.06
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (11 bp):
TATTTTTAAAT
Found at i:8244967 original size:3 final size:3
Alignment explanation
Indices: 8244959--8245018 Score: 120
Period size: 3 Copynumber: 20.0 Consensus size: 3
8244949 TTGATTGAGT
8244959 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8245007 TTA TTA TTA TTA
1 TTA TTA TTA TTA
8245019 ATAAGGGGTC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:8246318 original size:6 final size:6
Alignment explanation
Indices: 8246303--8246333 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
8246293 GCTACCTCCG
*
8246303 CCGCCC CCGCCT CCGCCT CCGCCT CCGCCT C
1 CCGCCT CCGCCT CCGCCT CCGCCT CCGCCT C
8246334 TGCCATATCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.71, G:0.16, T:0.13
Consensus pattern (6 bp):
CCGCCT
Found at i:8246622 original size:3 final size:3
Alignment explanation
Indices: 8246614--8246653 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
8246604 AGTTGCTACG
8246614 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
8246654 TGCTGATGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:8247046 original size:12 final size:13
Alignment explanation
Indices: 8247017--8247045 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
8247007 TTTATTTAAT
8247017 TTTTAAAAAGATA
1 TTTTAAAAAGATA
8247030 TTTTAAAAAGATA
1 TTTTAAAAAGATA
8247043 TTT
1 TTT
8247046 ATATATTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (13 bp):
TTTTAAAAAGATA
Found at i:8253860 original size:12 final size:12
Alignment explanation
Indices: 8253845--8253875 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
8253835 TTTGTTTTTC
8253845 TTCTTTTCTTCA
1 TTCTTTTCTTCA
*
8253857 TTCTTTTCTTTA
1 TTCTTTTCTTCA
8253869 TTCTTTT
1 TTCTTTT
8253876 TATTTTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.06, C:0.19, G:0.00, T:0.74
Consensus pattern (12 bp):
TTCTTTTCTTCA
Found at i:8254470 original size:29 final size:29
Alignment explanation
Indices: 8254414--8255069 Score: 773
Period size: 29 Copynumber: 22.7 Consensus size: 29
8254404 ATGAAAAATT
8254414 ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
* * *
8254443 ATTAGGTTAGGGTTATGGTTACGGTTTTTA
1 ATTAAGTTA-GGTTAGGGTTAGGGTTTTTA
*
8254473 ATTAAATTAGGTT-GGAGTTAGGGTTTTTA
1 ATTAAGTTAGGTTAGG-GTTAGGGTTTTTA
** *
8254502 ATTGGGTTATGTTAGGGTTAGGGTTTTTA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
* * *
8254531 ATTAATTTAGGTTAGGGTTAAGGTTTGTA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
*
8254560 ATTAAATTAGGTTAGGGTTAGGGTTTTTA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
*
8254589 ATTAAGTTAGGTTAGGGTTAGTGTTTTTA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
* *
8254618 TTTAAATTAGGTT-GGAGTTAGGGTTTTTTA
1 ATTAAGTTAGGTTAGG-GTTAGGG-TTTTTA
*
8254648 ATTAAGTTAGGTTAGGGTTAGTGTTTTTA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
*
8254677 ATTAAATTAGGTT-GGAGTTAGGGTTTTTA
1 ATTAAGTTAGGTTAGG-GTTAGGGTTTTTA
*
8254706 ATT--G---GGTTA-TGTTAGGGTTTTTA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
* *
8254729 ATTAGGGTTTAGGTTAAGGTTAGGGTTTTTA
1 ATTA-AG-TTAGGTTAGGGTTAGGGTTTTTA
8254760 ATT-AG---GGTTTA-GGTTAGGGTTTTTA
1 ATTAAGTTAGG-TTAGGGTTAGGGTTTTTA
* *
8254785 ATTAAATTAGATTAGGGTTAGGGTTTTCTA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTT-TA
* *
8254815 ATTAAATTAGGTTTAGGGTTAAGGTTTTTA
1 ATTAAGTTAGG-TTAGGGTTAGGGTTTTTA
** *
8254845 ATTGGGTTATGTTAGGGTTAGGGTTTTTA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
* *
8254874 ATTAATTTAGGTTAGGGTTAGGGTTTGTA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
* *
8254903 ATTAAATTAGGTTAGGGTTAGAGTTTTTTA
1 ATTAAGTTAGGTTAGGGTTAG-GGTTTTTA
*
8254933 ATTAAGTTAAGTTAGGGTTAGGGTTTTTA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
* *
8254962 ATTAGGTTATGTTAGGGTTAGGGTTTTTA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
*
8254991 ATTAAGTTAGGTTAGGGCTAGGGTTTTTA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
*
8255020 ATTAAATTAGGTTAGGGTTAGGGTTTTTA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
*
8255049 ATTAGGGTTTAGGTTAGGGTT
1 ATTA-AG-TTAGGTTAGGGTT
8255070 TTTATTACAT
Statistics
Matches: 537, Mismatches: 63, Indels: 52
0.82 0.10 0.08
Matches are distributed among these distances:
23 16 0.03
24 4 0.01
25 19 0.04
26 5 0.01
28 8 0.01
29 338 0.63
30 101 0.19
31 46 0.09
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.46
Consensus pattern (29 bp):
ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
Found at i:8254520 original size:88 final size:87
Alignment explanation
Indices: 8254414--8255069 Score: 782
Period size: 88 Copynumber: 7.6 Consensus size: 87
8254404 ATGAAAAATT
* * *
8254414 ATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAGGTTAGGGTTATGGTTACGGTTTTTAATTAAA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTTA-GGTTAGGGTTAGGGTTTTTAATTAAA
8254479 TTAGGTT-GGAGTTAGGGTTTTTA
65 TTAGGTTAGG-GTTAGGGTTTTTA
** * * * *
8254502 ATTGGGTTATGTTAGGGTTAGGGTTTTTAATTAATTTAGGTTAGGGTTAAGGTTTGTAATTAAAT
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAAT
8254567 TAGGTTAGGGTTAGGGTTTTTA
66 TAGGTTAGGGTTAGGGTTTTTA
* * *
8254589 ATTAAGTTAGGTTAGGGTTAGTGTTTTTATTTAAATTAGGTT-GGAGTTAGGGTTTTTTAATTAA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGTTAGG-GTTAGGG-TTTTTAATTAA
* *
8254653 GTTAGGTTAGGGTTAGTGTTTTTA
64 ATTAGGTTAGGGTTAGGGTTTTTA
* *
8254677 ATTAAATTAGGTT-GGAGTTAGGGTTTTTAATT--G---GGTTA-TGTTAGGGTTTTTAATTAGG
1 ATTAAGTTAGGTTAGG-GTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTA--
** *
8254735 GTTTAGGTTAAGGTTAGGGTTTTTA
63 AATTAGGTTAGGGTTAGGGTTTTTA
* *
8254760 ATT-AG---GGTTTA-GGTTAGGGTTTTTAATTAAATTAGATTAGGGTTAGGGTTTTCTAATTAA
1 ATTAAGTTAGG-TTAGGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTT-TAATTAA
*
8254820 ATTAGGTTTAGGGTTAAGGTTTTTA
64 ATTAGG-TTAGGGTTAGGGTTTTTA
** * * *
8254845 ATTGGGTTATGTTAGGGTTAGGGTTTTTAATTAATTTAGGTTAGGGTTAGGGTTTGTAATTAAAT
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAAT
*
8254910 TAGGTTAGGGTTAGAGTTTTTTA
66 TAGGTTAGGGTTAG-GGTTTTTA
* * * *
8254933 ATTAAGTTAAGTTAGGGTTAGGGTTTTTAATTAGGTTATGTTAGGGTTAGGGTTTTTAATTAAGT
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAAT
*
8254998 TAGGTTAGGGCTAGGGTTTTTA
66 TAGGTTAGGGTTAGGGTTTTTA
* *
8255020 ATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAGGGTTTAGGTTAGGGTT
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTA-AG-TTAGGTTAGGGTT
8255070 TTTATTACAT
Statistics
Matches: 488, Mismatches: 55, Indels: 49
0.82 0.09 0.08
Matches are distributed among these distances:
79 18 0.04
80 3 0.01
81 10 0.02
82 8 0.02
83 28 0.06
84 9 0.02
85 30 0.06
86 9 0.02
87 134 0.27
88 188 0.39
89 51 0.10
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.46
Consensus pattern (87 bp):
ATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAAT
TAGGTTAGGGTTAGGGTTTTTA
Found at i:8254542 original size:117 final size:116
Alignment explanation
Indices: 8254414--8255052 Score: 829
Period size: 117 Copynumber: 5.5 Consensus size: 116
8254404 ATGAAAAATT
** * *
8254414 ATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAGGTTAGGGTTATGGTTACGGTTTTTAATTAAA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAATTA-GGTTAGGGTTAGGGTTTTTAATTAAA
8254479 TTAGGTT-GGAGTTAGGGTTTTTAATTGGGTTATGTTAGGGTTAGGGTTTTTA
65 TTAGGTTAGG-GTTAGGGTTTTTAATTGGGTTATGTTAGGGTTAGGGTTTTTA
* * * *
8254531 ATTAATTTAGGTTAGGGTTAAGGTTTGTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAGT
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAAT
* * *** *
8254596 TAGGTTAGGGTTAGTGTTTTTATTTAAATTAGGTT-GGAGTTAGGGTTTTTTA
66 TAGGTTAGGGTTAGGGTTTTTAATTGGGTTATGTTAGG-GTTAGGG-TTTTTA
*
8254648 ATTAAGTTAGGTTAGGGTTAGTGTTTTTAATTAAATTAGGTT-GGAGTTAGGG--TTT--TT-AA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGG-GTTAGGGTTTTTAATTAAA
* * * *
8254707 TTGGGTTA-TGTTAGGGTTTTTAATTAGGGTTTAGGTTAAGGTTAGGGTTTTTA
65 TTAGGTTAGGGTTAGGGTTTTTAATT-GGG-TTATGTTAGGGTTAGGGTTTTTA
*
8254760 ATT-AG---GGTTTA-GGTTAGGGTTTTTAATTAAATTAGATTAGGGTTAGGGTTTTCTAATTAA
1 ATTAAGTTAGG-TTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTT-TAATTAA
*
8254820 ATTAGGTTTAGGGTTAAGGTTTTTAATTGGGTTATGTTAGGGTTAGGGTTTTTA
64 ATTAGG-TTAGGGTTAGGGTTTTTAATTGGGTTATGTTAGGGTTAGGGTTTTTA
* * * *
8254874 ATTAATTTAGGTTAGGGTTAGGGTTTGTAATTAAATTAGGTTAGGGTTAGAGTTTTTTAATTAAG
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAG-GGTTTTTAATTAAA
* *
8254939 TTAAGTTAGGGTTAGGGTTTTTAATTAGGTTATGTTAGGGTTAGGGTTTTTA
65 TTAGGTTAGGGTTAGGGTTTTTAATTGGGTTATGTTAGGGTTAGGGTTTTTA
*
8254991 ATTAAGTTAGGTTAGGGCTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTA
8255053 GGGTTTAGGT
Statistics
Matches: 453, Mismatches: 46, Indels: 47
0.83 0.08 0.09
Matches are distributed among these distances:
108 34 0.08
109 5 0.01
110 2 0.00
111 17 0.04
112 17 0.04
113 18 0.04
114 31 0.07
115 12 0.03
116 85 0.19
117 181 0.40
118 46 0.10
119 5 0.01
ACGTcount: A:0.25, C:0.00, G:0.29, T:0.46
Consensus pattern (116 bp):
ATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAAT
TAGGTTAGGGTTAGGGTTTTTAATTGGGTTATGTTAGGGTTAGGGTTTTTA
Found at i:8254697 original size:35 final size:35
Alignment explanation
Indices: 8254599--8254701 Score: 111
Period size: 35 Copynumber: 3.3 Consensus size: 35
8254589 ATTAAGTTAG
*
8254599 GTTAGGGTTAGTGTTTTTATTTAAATTAGGTTGGA
1 GTTAGGGTTAGTGTTTTTAATTAAATTAGGTTGGA
*
8254634 GTTA-GG---GT-TTTTTAATT--A--A-GTTAG-
1 GTTAGGGTTAGTGTTTTTAATTAAATTAGGTTGGA
8254658 GTTAGGGTTAGTGTTTTTAATTAAATTAGGTTGGA
1 GTTAGGGTTAGTGTTTTTAATTAAATTAGGTTGGA
8254693 GTTAGGGTT
1 GTTAGGGTT
8254702 TTTAATTGGG
Statistics
Matches: 54, Mismatches: 3, Indels: 22
0.68 0.04 0.28
Matches are distributed among these distances:
24 4 0.07
25 6 0.11
26 1 0.02
28 3 0.06
29 9 0.17
30 8 0.15
31 3 0.06
33 1 0.02
34 6 0.11
35 13 0.24
ACGTcount: A:0.23, C:0.00, G:0.29, T:0.48
Consensus pattern (35 bp):
GTTAGGGTTAGTGTTTTTAATTAAATTAGGTTGGA
Found at i:8254799 original size:23 final size:24
Alignment explanation
Indices: 8254748--8254803 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 24
8254738 TAGGTTAAGG
** *
8254748 TTAGGGTTTTTAATTAGGGTTTAGG
1 TTAGGGTTTTTAATTA-GAATTAGA
8254773 TTAGGGTTTTTAATTA-AATTAGA
1 TTAGGGTTTTTAATTAGAATTAGA
8254796 TTAGGGTT
1 TTAGGGTT
8254804 AGGGTTTTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 12 0.43
25 16 0.57
ACGTcount: A:0.25, C:0.00, G:0.27, T:0.48
Consensus pattern (24 bp):
TTAGGGTTTTTAATTAGAATTAGA
Found at i:8255097 original size:25 final size:25
Alignment explanation
Indices: 8255069--8255182 Score: 80
Period size: 25 Copynumber: 4.7 Consensus size: 25
8255059 AGGTTAGGGT
8255069 TTTTATTACATCAAATAAACTTCTA
1 TTTTATTACATCAAATAAACTTCTA
*
8255094 TTTTATTACATTAAAT-AA-TATC-A
1 TTTTATTACATCAAATAAACT-TCTA
** * *
8255117 --AAATAAC-TCGAA-AAACTTTCTA
1 TTTTATTACATCAAATAAAC-TTCTA
** *
8255139 TGCATATTACATCAAATAAAATTCTA
1 T-TTTATTACATCAAATAAACTTCTA
8255165 TTTTATTACATCAAATAA
1 TTTTATTACATCAAATAA
8255183 TAAATTTAAA
Statistics
Matches: 67, Mismatches: 12, Indels: 20
0.68 0.12 0.20
Matches are distributed among these distances:
20 5 0.07
21 6 0.09
22 2 0.03
23 2 0.03
24 4 0.06
25 35 0.52
26 10 0.15
27 3 0.04
ACGTcount: A:0.45, C:0.14, G:0.02, T:0.39
Consensus pattern (25 bp):
TTTTATTACATCAAATAAACTTCTA
Found at i:8256281 original size:7 final size:7
Alignment explanation
Indices: 8256271--8256302 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
8256261 TTATATACAT
8256271 AATACTA
1 AATACTA
8256278 AATACTA
1 AATACTA
8256285 AATACTA
1 AATACTA
*
8256292 AATACAA
1 AATACTA
8256299 AATA
1 AATA
8256303 TCTATTAGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.62, C:0.12, G:0.00, T:0.25
Consensus pattern (7 bp):
AATACTA
Found at i:8256288 original size:14 final size:14
Alignment explanation
Indices: 8256265--8256302 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
8256255 TATTAGTTAT
*
8256265 ATACATAATACTAA
1 ATACAAAATACTAA
*
8256279 ATACTAAATACTAA
1 ATACAAAATACTAA
8256293 ATACAAAATA
1 ATACAAAATA
8256303 TCTATTAGCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.61, C:0.13, G:0.00, T:0.26
Consensus pattern (14 bp):
ATACAAAATACTAA
Found at i:8256481 original size:20 final size:20
Alignment explanation
Indices: 8256443--8256481 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
8256433 CTTTTATTTT
*
8256443 TAAAATCTACATAATAATTG
1 TAAAATCTACATAAAAATTG
8256463 TAAAATCTA-ATATAAAATT
1 TAAAATCTACATA-AAAATT
8256482 TACCTCGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.54, C:0.08, G:0.03, T:0.36
Consensus pattern (20 bp):
TAAAATCTACATAAAAATTG
Found at i:8257472 original size:51 final size:51
Alignment explanation
Indices: 8257413--8257536 Score: 178
Period size: 51 Copynumber: 2.4 Consensus size: 51
8257403 TATTTTAAAA
* * *
8257413 AAGGAAATTGAGAGCAAATTGAAATTAAATATGGGTTTGA-GAGATTTTTGG
1 AAGGAAATTGAGAGAAAATTGAAATTAAATATGGATTT-ATGAGAATTTTGG
* * *
8257464 AATGAAATTGAGAGGAAATTGAAATTAAATATGGATTTATGATAATTTTGG
1 AAGGAAATTGAGAGAAAATTGAAATTAAATATGGATTTATGAGAATTTTGG
8257515 AAGGAAATTGAGAGAAAATTGA
1 AAGGAAATTGAGAGAAAATTGA
8257537 GAGGAAATTG
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
50 1 0.02
51 64 0.98
ACGTcount: A:0.44, C:0.01, G:0.25, T:0.31
Consensus pattern (51 bp):
AAGGAAATTGAGAGAAAATTGAAATTAAATATGGATTTATGAGAATTTTGG
Found at i:8257535 original size:11 final size:11
Alignment explanation
Indices: 8257519--8257563 Score: 63
Period size: 11 Copynumber: 4.0 Consensus size: 11
8257509 TTTTGGAAGG
8257519 AAATTGAGAGA
1 AAATTGAGAGA
*
8257530 AAATTGAGAGG
1 AAATTGAGAGA
*
8257541 AAATTGAGAGG
1 AAATTGAGAGA
8257552 AAATATGAGAGA
1 AAAT-TGAGAGA
8257564 GGATTTGTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
11 25 0.81
12 6 0.19
ACGTcount: A:0.51, C:0.00, G:0.31, T:0.18
Consensus pattern (11 bp):
AAATTGAGAGA
Found at i:8257541 original size:22 final size:23
Alignment explanation
Indices: 8257516--8257562 Score: 78
Period size: 22 Copynumber: 2.1 Consensus size: 23
8257506 TAATTTTGGA
8257516 AGGAAATTGAGAGAAAAT-TGAG
1 AGGAAATTGAGAGAAAATATGAG
*
8257538 AGGAAATTGAGAGGAAATATGAG
1 AGGAAATTGAGAGAAAATATGAG
8257561 AG
1 AG
8257563 AGGATTTGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 17 0.74
23 6 0.26
ACGTcount: A:0.49, C:0.00, G:0.34, T:0.17
Consensus pattern (23 bp):
AGGAAATTGAGAGAAAATATGAG
Found at i:8260174 original size:27 final size:26
Alignment explanation
Indices: 8260096--8260167 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 26
8260086 CGATTTAATT
8260096 GGTGGAGGGT-GAGAGAGGTGACACC
1 GGTGGAGGGTAGAGAGAGGTGACACC
* * *
8260121 AGTGGAGGGTGAGAAAGAGGTGGCACC
1 GGTGGAGGGT-AGAGAGAGGTGACACC
8260148 GGTGGAGGGTAAGAGAGAGG
1 GGTGGAGGGT-AGAGAGAGG
8260168 CAACACCCGT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
25 9 0.23
27 30 0.77
ACGTcount: A:0.28, C:0.08, G:0.53, T:0.11
Consensus pattern (26 bp):
GGTGGAGGGTAGAGAGAGGTGACACC
Found at i:8266198 original size:19 final size:19
Alignment explanation
Indices: 8266135--8266204 Score: 51
Period size: 19 Copynumber: 3.8 Consensus size: 19
8266125 AAGATAGATA
8266135 AAAAAGTTGAGAGAATGA-TG
1 AAAAAG-TGAGAG-ATGATTG
**
8266155 AATGAGTGAGAGATGATTG
1 AAAAAGTGAGAGATGATTG
*
8266174 ---GA-TGAGAGATGATTG
1 AAAAAGTGAGAGATGATTG
*
8266189 AAAAAGTGAGAAATGA
1 AAAAAGTGAGAGATGA
8266205 ACTCTTATTT
Statistics
Matches: 41, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
15 13 0.32
16 2 0.05
18 5 0.12
19 17 0.41
20 4 0.10
ACGTcount: A:0.46, C:0.00, G:0.33, T:0.21
Consensus pattern (19 bp):
AAAAAGTGAGAGATGATTG
Found at i:8275533 original size:14 final size:14
Alignment explanation
Indices: 8275522--8275549 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8275512 CTCAATTATT
8275522 AATGAAATATTAAA
1 AATGAAATATTAAA
8275536 AATGAAATATTAAA
1 AATGAAATATTAAA
8275550 TATAACTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (14 bp):
AATGAAATATTAAA
Found at i:8276931 original size:3 final size:3
Alignment explanation
Indices: 8276925--8276953 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
8276915 ATTATTATTA
8276925 TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
8276954 AACTAATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Done.