Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53248092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1300000 characters in sequence are not A, C, G, or T
File 33 of 175
Found at i:8855149 original size:18 final size:17
Alignment explanation
Indices: 8855126--8855178 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 17
8855116 CCAACCCGAG
8855126 CCCAATTACAATACAAAA
1 CCCAA-TACAATACAAAA
**
8855144 CCCAATACAACCCAAGAA
1 CCCAATACAATACAA-AA
*
8855162 CCCAAAAACAATACAAA
1 CCC-AATACAATACAAA
8855179 CCTAGCAGAC
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
17 8 0.29
18 11 0.39
19 9 0.32
ACGTcount: A:0.57, C:0.32, G:0.02, T:0.09
Consensus pattern (17 bp):
CCCAATACAATACAAAA
Found at i:8856389 original size:3 final size:3
Alignment explanation
Indices: 8856383--8856414 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
8856373 ATTATTATTA
8856383 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
8856415 ATTATTACCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:8856805 original size:18 final size:17
Alignment explanation
Indices: 8856782--8856820 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
8856772 TGCTTTAATT
*
8856782 TTTTATTTGTTTATTTAC
1 TTTTATTTGTTGATTT-C
8856800 TTTTATTTGTTGATTTC
1 TTTTATTTGTTGATTTC
8856817 TTTT
1 TTTT
8856821 CATTATATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.13, C:0.05, G:0.08, T:0.74
Consensus pattern (17 bp):
TTTTATTTGTTGATTTC
Found at i:8857268 original size:111 final size:111
Alignment explanation
Indices: 8856930--8857455 Score: 772
Period size: 111 Copynumber: 4.9 Consensus size: 111
8856920 ATCAAAAACG
* * ***
8856930 AAAAATTTTTCAAATAAGGCAATGTTTTATATTT-GGAAATTCGAGAAAACATGCCCTAAGGTGC
1 AAAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGC
*
8856994 TAGGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTT
66 TGGGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTT
8857040 -AAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAA-----
1 AAAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGC
8857099 -GGGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTT
66 TGGGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTT
* *
8857144 AAAAAATTTTAAAATAAGGCAATGTTTTGTGTTTGGGAAATTCGAGAAAACATACCCTAAGGTGC
1 AAAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGC
8857209 TGGGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTT
66 TGGGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTT
*
8857255 AAAAAATTTTAAAATAAGGTAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGC
1 AAAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGC
* * *
8857320 TGGGTTTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTT
66 TGGGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTT
* * * ** *
8857366 -AAAAATTTCAAAATAAGGCAATGTTTTGCGTTT-GGAAATTTGAG-GAATGTACCCTAAGGTGC
1 AAAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGC
* * *
8857428 TGAGTTTCGA--TTTCTCGTTTAACCAAAT
66 TGGGTGTCGATTTTTCTCGTTCAACCAAAT
8857456 AGCCAAATAT
Statistics
Matches: 384, Mismatches: 24, Indels: 20
0.90 0.06 0.05
Matches are distributed among these distances:
104 44 0.11
105 57 0.15
106 16 0.04
108 23 0.06
109 38 0.10
110 56 0.15
111 150 0.39
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (111 bp):
AAAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGC
TGGGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTT
Found at i:8858911 original size:19 final size:18
Alignment explanation
Indices: 8858870--8858912 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
8858860 CGTCTCTTTT
8858870 TGCATTCATTTCATGCATC
1 TGCATTCATTTCATGCA-C
8858889 TGCATTGCATTTCATTGCA-
1 TGCATT-CATTTCA-TGCAC
8858908 TGCAT
1 TGCAT
8858913 CAAATTTCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 11 0.50
20 7 0.32
21 4 0.18
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (18 bp):
TGCATTCATTTCATGCAC
Found at i:8861303 original size:19 final size:19
Alignment explanation
Indices: 8861279--8861315 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
8861269 CAATAAAACT
*
8861279 AAAAAAAGGGAAAAAGGAA
1 AAAAAAAGAGAAAAAGGAA
8861298 AAAAAAAGAGAAAAAGGA
1 AAAAAAAGAGAAAAAGGA
8861316 GAGGCCAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (19 bp):
AAAAAAAGAGAAAAAGGAA
Found at i:8864070 original size:88 final size:88
Alignment explanation
Indices: 8862536--8864052 Score: 2036
Period size: 88 Copynumber: 17.2 Consensus size: 88
8862526 AACAGATCAG
* * *** * *
8862536 CGAAGACACAAACATTGCCTCTCTCGATTGTAACAGAGCTGGTTAAAGACAACAGATCTTACCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
8862601 CCTGCATTGACAGCGAAGCAGAT
66 CCTGCATTGACAGCGAAGCAGAT
* * * *
8862624 CGAAGACACAAACCTTGTCTCTCTCGGTTGTAGTAGAGCTGGTTGAAGACAACAGATCTTACTTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
*
8862689 CCTGTATTGACAGCGAAGCAGAT
66 CCTGCATTGACAGCGAAGCAGAT
* * *
8862712 CGAAGACACAAACCTTGCCTCTCTCGATTGTAGTGGATCTGGTTGAAGGCAACAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
*
8862777 CCTGCATTGATAGCGAAGCAGAT
66 CCTGCATTGACAGCGAAGCAGAT
* *
8862800 CGAAGACACAAACCTTGCCTCTCTCGGTTATAGTGGAGCTGGTTGATGACAACAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
* * *
8862865 CCTGAATCGACAGCGAAGCGGAT
66 CCTGCATTGACAGCGAAGCAGAT
* * * ** *
8862888 CGAAGACACAAGCCTTGCCTCCCTCGGTTGTAGTGGAGCTAGTTGAAGACAGTAGATATTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
* *
8862953 CCTGCATCGACAGCGAAGCGGAT
66 CCTGCATTGACAGCGAAGCAGAT
* * * * * ** * *
8862976 CGAAGATACAACCCTTGCCTCCCTCCGTTGTAGTGGAGCTGGTTGAAGATAGTAGATTTTACCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
*
8863041 CCTGCATTGACAGCGAAGCAAAT
66 CCTGCATTGACAGCGAAGCAGAT
*
8863064 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAACAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
* *
8863129 CTTGCATTGATC-GCGAAGTAGAT
66 CCTGCATTGA-CAGCGAAGCAGAT
**
8863152 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCAGAGCTGGTTGAAGACAACAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
*
8863217 CCTGTATTGACAGCGAAGCAGAT
66 CCTGCATTGACAGCGAAGCAGAT
* * * ** *
8863240 CGAAGACACAAGCCTTGCCTCCCTCGGTTGTAGTGGAGCTAGTTGAAGACAGTAGATATTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
* * *
8863305 CCTGCATCGACAGCTAAGCGGAT
66 CCTGCATTGACAGCGAAGCAGAT
* * * * * * * *
8863328 CGAAGATACAAGCCTTGCCTCCCTTC-ATTGTAGTGGAGCTGGTTAAAGATAGCAGAAT-TTACC
1 CGAAGACACAAACCTTGCCTCTC-TCGGTTGTAGTGGAGCTGGTTGAAGACAACAG-ATCTTGCC
*
8863391 TTCCTGCATTGACAGCGAAGCAAAT
64 TTCCTGCATTGACAGCGAAGCAGAT
*
8863416 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAACAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
* * * *
8863481 CTTTCATTGACAACGAAGTAGAT
66 CCTGCATTGACAGCGAAGCAGAT
* *
8863504 CAAAGACACAAACCTTGCCTCTCTCGGTTGTAGTAGAGCTGGTTGAAGACAACAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
8863569 CCTGCATTGACAGCGAAGCAGAT
66 CCTGCATTGACAGCGAAGCAGAT
* * *
8863592 CGAAGACACAAACCTTTCCTCTCTCGGTTGCAGCGGAGCTGGTTGAAGACAACAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
8863657 CCTGCATTGACAGCGAAGCAGAT
66 CCTGCATTGACAGCGAAGCAGAT
***
8863680 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAACAGAGCTGGTTGAAGACAACAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
*
8863745 CCTGCATTGACAGCGAAGTAGAT
66 CCTGCATTGACAGCGAAGCAGAT
* *
8863768 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGATGATGACAACAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
* *
8863833 CCTGAATCGACAGCGAAGC-GAAT
66 CCTGCATTGACAGCGAAGCAG-AT
* * * * **
8863856 CGAAAACACAAGCCTTGCCTCCCTCGGTTGTAGTAGAGCTGGTTGAAGACAGTAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
* * *
8863921 CCTACATCGGCAGCGAAGC-GTAT
66 CCTGCATTGACAGCGAAGCAG-AT
* * * * * * *
8863944 CGAAGATACAAGCTTTGCCTCCCTCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATTTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
* * *
8864009 CCTGCATCGATAGAGAAGCAGAT
66 CCTGCATTGACAGCGAAGCAGAT
* *
8864032 CGAAGACACAAGCCTTACCTC
1 CGAAGACACAAACCTTGCCTC
8864053 CCTCAGCAGT
Statistics
Matches: 1271, Mismatches: 150, Indels: 16
0.88 0.10 0.01
Matches are distributed among these distances:
87 6 0.00
88 1259 0.99
89 6 0.00
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (88 bp):
CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
CCTGCATTGACAGCGAAGCAGAT
Found at i:8864294 original size:132 final size:132
Alignment explanation
Indices: 8864051--8864341 Score: 395
Period size: 132 Copynumber: 2.2 Consensus size: 132
8864041 AAGCCTTACC
* * ** * * *
8864051 TCCCTCAGCAGTAGCGGAGCAGATCGTAGATGGTGAATCTTATCTTCCCAAGACAGTGGAGAAGT
1 TCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAAAACAATGGAGAAGC
* * * * ** *
8864116 AGATTTAAGCCATTAATTCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAAATTTTG
66 AGATTTAAGCCATTAATCCTATCTCCCTAAGCAATAGTAGAATAGGTCAAAGATTGCAAATTCTG
8864181 TCA
131 T-A
8864184 -CCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAAAACAATGGAGAAGC
1 TCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAAAACAATGGAGAAGC
* * * *
8864248 AGATTTAAGCCATTAGTCCTATCTCCCTAAGCAATAGTAGAATAGGTCAAATATTGTAGATTCTG
66 AGATTTAAGCCATTAATCCTATCTCCCTAAGCAATAGTAGAATAGGTCAAAGATTGCAAATTCTG
8864313 TA
131 TA
*
8864315 TCCCTAAGCAGTAGTGGAGCAAATCAA
1 TCCCTAAGCAGTAGTGGAGCAGATCAA
8864342 CAACGGCGAA
Statistics
Matches: 138, Mismatches: 19, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
131 1 0.01
132 137 0.99
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.27
Consensus pattern (132 bp):
TCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAAAACAATGGAGAAGC
AGATTTAAGCCATTAATCCTATCTCCCTAAGCAATAGTAGAATAGGTCAAAGATTGCAAATTCTG
TA
Found at i:8864400 original size:49 final size:49
Alignment explanation
Indices: 8864341--8864602 Score: 194
Period size: 49 Copynumber: 5.3 Consensus size: 49
8864331 GAGCAAATCA
* *
8864341 ACAACGGCGAATCTTACTTCCAAGTGATGCAGCAGAACAAATTGAAGTC
1 ACAACGGCGAATCTTACTTCCAAGAGATGCAGCAGAACAGATTGAAGTC
* * * ** * * * *
8864390 ACAACAGCGAATCTTGCGTCCCCGACATTGTAATTCAG-A-AGATTGAAGCC
1 ACAACGGCGAATCTTACTTCCAAGAGA-TG-CA-GCAGAACAGATTGAAGTC
* *
8864440 ACAACGGTGAATCTTACTTCCAAGCGATGCAGCAGAACAGATTGAAGTC
1 ACAACGGCGAATCTTACTTCCAAGAGATGCAGCAGAACAGATTGAAGTC
* ** * * * *
8864489 ACAACGGCGAATCTTGA-GTCCCCGACATTGCAATTCA-AA-ATATTGAAGCC
1 ACAACGGCGAATCTT-ACTTCCAAGAGA-TGC-A-GCAGAACAGATTGAAGTC
* * *
8864539 ACAACGGCGAGTCTTACTTCCAAGCGATGCAGC-GAAAAAGATTGAAGTC
1 ACAACGGCGAATCTTACTTCCAAGAGATGCAGCAG-AACAGATTGAAGTC
*
8864588 ACAACGGTGAATCTT
1 ACAACGGCGAATCTT
8864603 GCGTCCCCGA
Statistics
Matches: 158, Mismatches: 42, Indels: 26
0.70 0.19 0.12
Matches are distributed among these distances:
47 4 0.03
48 5 0.03
49 77 0.49
50 62 0.39
51 5 0.03
52 5 0.03
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.21
Consensus pattern (49 bp):
ACAACGGCGAATCTTACTTCCAAGAGATGCAGCAGAACAGATTGAAGTC
Found at i:8864443 original size:50 final size:50
Alignment explanation
Indices: 8864381--8864742 Score: 290
Period size: 50 Copynumber: 7.3 Consensus size: 50
8864371 AGCAGAACAA
* * * * *
8864381 ATTGAAGTCACAACAGCGAATCTTGCGTCCCCGACATTGTAATTCAGAAG
1 ATTGAAGCCACAACGGCGAATCTTGCTTCCCCGACATTGCAATTCAAAAG
* * ** *
8864431 ATTGAAGCCACAACGGTGAATCTTACTTCCAAG-CGA-TGC-A-GCAGAACAG
1 ATTGAAGCCACAACGGCGAATCTTGCTTCCCCGAC-ATTGCAATTCA-AA-AG
* ** *
8864480 ATTGAAGTCACAACGGCGAATCTTGAGTCCCCGACATTGCAATTCAAAAT
1 ATTGAAGCCACAACGGCGAATCTTGCTTCCCCGACATTGCAATTCAAAAG
* * ** ****
8864530 ATTGAAGCCACAACGGCGAGTCTTACTTCCAAG-CGA-TGCAGCGAAAAAG
1 ATTGAAGCCACAACGGCGAATCTTGCTTCCCCGAC-ATTGCAATTCAAAAG
* * *
8864579 ATTGAAGTCACAACGGTGAATCTTGCGTCCCCGACATTGCAATTCAAAAG
1 ATTGAAGCCACAACGGCGAATCTTGCTTCCCCGACATTGCAATTCAAAAG
* * * * * *
8864629 ATTGAAGCCACCACGACGAATCTTACTTCCCAGACAATGC-A-GCGAAATAG
1 ATTGAAGCCACAACGGCGAATCTTGCTTCCCCGACATTGCAATTC-AAA-AG
* * * * *
8864679 ATTGAAGCTACGACGGTGAATCTCGCTTCCTCGACATTGCAATTCAAAAG
1 ATTGAAGCCACAACGGCGAATCTTGCTTCCCCGACATTGCAATTCAAAAG
8864729 ATTGAAGCCACAAC
1 ATTGAAGCCACAAC
8864743 AGATTGAAGC
Statistics
Matches: 235, Mismatches: 63, Indels: 28
0.72 0.19 0.09
Matches are distributed among these distances:
47 2 0.01
48 3 0.01
49 72 0.31
50 148 0.63
51 7 0.03
52 3 0.01
ACGTcount: A:0.34, C:0.25, G:0.20, T:0.21
Consensus pattern (50 bp):
ATTGAAGCCACAACGGCGAATCTTGCTTCCCCGACATTGCAATTCAAAAG
Found at i:8864722 original size:100 final size:99
Alignment explanation
Indices: 8864341--8864742 Score: 558
Period size: 99 Copynumber: 4.1 Consensus size: 99
8864331 GAGCAAATCA
* * * *
8864341 ACAACGGCGAATCTTACTTCCAAGTGATGCAGCAGAACAA-ATTGAAGTCACAACAGCGAATCTT
1 ACAACGGCGAATCTTACTTCCAAGCGATGCAGC-GAAAAAGATTGAAGTCACAACGGTGAATCTT
* *
8864405 GCGTCCCCGACATTGTAATTCAGAAGATTGAAGCC
65 GCGTCCCCGACATTGCAATTCAAAAGATTGAAGCC
* * *
8864440 ACAACGGTGAATCTTACTTCCAAGCGATGCAGC-AGAACAGATTGAAGTCACAACGGCGAATCTT
1 ACAACGGCGAATCTTACTTCCAAGCGATGCAGCGA-AAAAGATTGAAGTCACAACGGTGAATCTT
* *
8864504 GAGTCCCCGACATTGCAATTCAAAATATTGAAGCC
65 GCGTCCCCGACATTGCAATTCAAAAGATTGAAGCC
*
8864539 ACAACGGCGAGTCTTACTTCCAAGCGATGCAGCGAAAAAGATTGAAGTCACAACGGTGAATCTTG
1 ACAACGGCGAATCTTACTTCCAAGCGATGCAGCGAAAAAGATTGAAGTCACAACGGTGAATCTTG
8864604 CGTCCCCGACATTGCAATTCAAAAGATTGAAGCC
66 CGTCCCCGACATTGCAATTCAAAAGATTGAAGCC
* * * * * *
8864638 ACCACGACGAATCTTACTTCCCAGACAATGCAGCGAAATAGATTGAAG-CTACGACGGTGAATCT
1 ACAACGGCGAATCTTACTTCCAAG-CGATGCAGCGAAAAAGATTGAAGTC-ACAACGGTGAATCT
* * *
8864702 CGCTTCCTCGACATTGCAATTCAAAAGATTGAAGCC
64 TGCGTCCCCGACATTGCAATTCAAAAGATTGAAGCC
8864738 ACAAC
1 ACAAC
8864743 AGATTGAAGC
Statistics
Matches: 272, Mismatches: 26, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
97 1 0.00
98 2 0.01
99 197 0.72
100 72 0.26
ACGTcount: A:0.34, C:0.25, G:0.20, T:0.21
Consensus pattern (99 bp):
ACAACGGCGAATCTTACTTCCAAGCGATGCAGCGAAAAAGATTGAAGTCACAACGGTGAATCTTG
CGTCCCCGACATTGCAATTCAAAAGATTGAAGCC
Found at i:8864797 original size:66 final size:66
Alignment explanation
Indices: 8864677--8864804 Score: 177
Period size: 66 Copynumber: 1.9 Consensus size: 66
8864667 GCAGCGAAAT
* * * * *
8864677 AGATTGAAGCTACGACGGTGAATCTCGCTTCCTCGACATTGCAATTCAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACGACGGCGAATCTCACTTCCCCAACATTACAATTCAAAAGATTGAAGCCACAA
8864742 C
66 C
* *
8864743 AGATTGAAGCTACGACGGCGAATCTTACTTCCCCAACATTACAGTT-AAACAGATTGAAGCCA
1 AGATTGAAGCTACGACGGCGAATCTCACTTCCCCAACATTACAATTCAAA-AGATTGAAGCCA
8864805 ATAATTCTAT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
65 3 0.06
66 51 0.94
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.23
Consensus pattern (66 bp):
AGATTGAAGCTACGACGGCGAATCTCACTTCCCCAACATTACAATTCAAAAGATTGAAGCCACAA
C
Found at i:8864864 original size:44 final size:44
Alignment explanation
Indices: 8864812--8865121 Score: 136
Period size: 44 Copynumber: 7.2 Consensus size: 44
8864802 CCAATAATTC
*
8864812 TATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCT
1 TATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATGTCAGATCT
* ** * ** * * *
8864856 TATCTCCCTAAG-CAGTAGTGGAGCAGATTGAAGATGGCGGATTT
1 TATCTCCCT-GGTTGGCAGTGGAATAGATTGAAGATGTCAGATCT
* * * * *
8864900 TACCTCCATGTGGTT-ACAGT-AAAGTACATTGAAG-TAGT-A-AT-T
1 TATCTCC--CTGGTTGGCAGTGGAA-TAGATTGAAGAT-GTCAGATCT
8864942 CTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATGTCAGATCT
1 -TATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATGTCAGATCT
* * * *
8864987 TATCTCCCTAAG-TGG-A---GCAT--ATTGAAGATGACAGATTT
1 TATCTCCCT-GGTTGGCAGTGGAATAGATTGAAGATGTCAGATCT
* * * * * *
8865025 TACCTCCCTGTGATT-ACAATGGAGTACATTGAAGCTAGT-A-AT-T
1 TATCTCCCTG-G-TTGGCAGTGGAATAGATTGAAGAT-GTCAGATCT
* *
8865068 CTATCTCTCTGGTTGGCAGTGGAATAGATTGAAGAT-TACAGATCC
1 -TATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATGT-CAGATCT
8865113 TATCTCCCT
1 TATCTCCCT
8865122 AAACAGTAGT
Statistics
Matches: 189, Mismatches: 47, Indels: 60
0.64 0.16 0.20
Matches are distributed among these distances:
38 25 0.13
40 5 0.03
41 6 0.03
42 18 0.10
43 34 0.18
44 74 0.39
45 25 0.13
46 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (44 bp):
TATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATGTCAGATCT
Found at i:8865110 original size:126 final size:125
Alignment explanation
Indices: 8864795--8865123 Score: 462
Period size: 126 Copynumber: 2.6 Consensus size: 125
8864785 AGTTAAACAG
* *
8864795 ATTGAAGCCAATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATC
1 ATTGAAGCTAGTAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGA-TTCAGATCTTATC
* * * *
8864860 TCCCTAAGCAGTAGTGGAGCAGATTGAAGATGGCGGATTTTACCTCCATGTGGTTACAGTAAAGT
65 TCCCT----A--AGTGGAGCAGATTGAAGATGACAGATTTTACCTCCATGTGATTACAATAAAGT
8864925 AC
124 AC
8864927 ATTGAAG-TAGTAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATGTCAGATCTTATC
1 ATTGAAGCTAGTAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGAT-TCAGATCTTATC
* * **
8864991 TCCCTAAGTGGAGCATATTGAAGATGACAGATTTTACCTCCCTGTGATTACAATGGAGTAC
65 TCCCTAAGTGGAGCAGATTGAAGATGACAGATTTTACCTCCATGTGATTACAATAAAGTAC
* *
8865052 ATTGAAGCTAGTAATTCTATCTCTCTGGTTGGCAGTGGAATAGATTGAAGATTACAGATCCTATC
1 ATTGAAGCTAGTAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATT-CAGATCTTATC
8865117 TCCCTAA
65 TCCCTAA
8865124 ACAGTAGTGG
Statistics
Matches: 182, Mismatches: 12, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
125 55 0.30
126 60 0.33
127 1 0.01
130 1 0.01
131 58 0.32
132 7 0.04
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (125 bp):
ATTGAAGCTAGTAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTCAGATCTTATCT
CCCTAAGTGGAGCAGATTGAAGATGACAGATTTTACCTCCATGTGATTACAATAAAGTAC
Found at i:8866781 original size:3 final size:3
Alignment explanation
Indices: 8866773--8866815 Score: 77
Period size: 3 Copynumber: 14.3 Consensus size: 3
8866763 ATATTTTAGC
*
8866773 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT GTT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
8866816 CCTACTTATT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:8867180 original size:18 final size:17
Alignment explanation
Indices: 8867157--8867195 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
8867147 TGCTTTAATT
*
8867157 TTTTATTTGTTTATTTAC
1 TTTTATTTGTTGATTT-C
8867175 TTTTATTTGTTGATTTC
1 TTTTATTTGTTGATTTC
8867192 TTTT
1 TTTT
8867196 CATTATATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.13, C:0.05, G:0.08, T:0.74
Consensus pattern (17 bp):
TTTTATTTGTTGATTTC
Found at i:8867616 original size:111 final size:109
Alignment explanation
Indices: 8867310--8867724 Score: 647
Period size: 110 Copynumber: 3.8 Consensus size: 109
8867300 AACGAAAATT
* *
8867310 TTTTCAAATAAGGCAATGTTTTACGTTTGAAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
1 TTTTAAAATAAGGCAATGTTTTACGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
8867375 CGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAA
66 CGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAA
8867419 TTTTAAAATAAGGCAATGTTTTACGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
1 TTTTAAAATAAGGCAATGTTTTACGTTT-GGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
8867484 TCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAA
65 TCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAA
* *
8867529 TTTATAAAATAAGGCAATGTTTTGCGTTTGGGAAATTTGAGAAAACATGCCCTAAGGTGCTGGGT
1 TTT-TAAAATAAGGCAATGTTTTACGTTT-GGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGT
* *
8867594 GTCAATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTTAAAAA
64 GTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAA
* * * * ** * *
8867640 TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTTGAG-GAATGTACCCTAAGGTGCTGGGTTT
1 TTTTAAAATAAGGCAATGTTTTACGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
*
8867704 CGA--TTTCTCGTTTAACCAAAT
66 CGATTTTTCTCGTTCAACCAAAT
8867725 AGCCAAATAT
Statistics
Matches: 290, Mismatches: 14, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
106 17 0.06
108 22 0.08
109 38 0.13
110 107 0.37
111 106 0.37
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (109 bp):
TTTTAAAATAAGGCAATGTTTTACGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
CGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAA
Found at i:8868110 original size:14 final size:14
Alignment explanation
Indices: 8868061--8868110 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
8868051 ACACGTATCA
* *
8868061 TTATTATAT-AATA
1 TTATTATTTGAATT
8868074 TTATTATTTGAATT
1 TTATTATTTGAATT
*
8868088 TTTTTATTTG-ATT
1 TTATTATTTGAATT
8868101 TTATTCATTT
1 TTATT-ATTT
8868111 TTATTATTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 15 0.48
14 16 0.52
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.66
Consensus pattern (14 bp):
TTATTATTTGAATT
Found at i:8868125 original size:18 final size:17
Alignment explanation
Indices: 8868100--8868159 Score: 72
Period size: 18 Copynumber: 3.6 Consensus size: 17
8868090 TTTATTTGAT
8868100 TTTATTCATTTTTATTA
1 TTTATTCATTTTTATTA
*
8868117 TTGTATTCA-TTATATTA
1 TT-TATTCATTTTTATTA
8868134 -TT-TTCATTTTTATTA
1 TTTATTCATTTTTATTA
8868149 TTTATGTCATT
1 TTTAT-TCATT
8868160 ATTTCGTTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
14 4 0.11
15 8 0.22
16 3 0.08
17 10 0.28
18 11 0.31
ACGTcount: A:0.23, C:0.07, G:0.03, T:0.67
Consensus pattern (17 bp):
TTTATTCATTTTTATTA
Found at i:8868883 original size:14 final size:14
Alignment explanation
Indices: 8868834--8868883 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
8868824 ACACGTATCA
* *
8868834 TTATTATAT-AATA
1 TTATTATTTGAATT
8868847 TTATTATTTGAATT
1 TTATTATTTGAATT
*
8868861 TTTTTATTTG-ATT
1 TTATTATTTGAATT
8868874 TTATTCATTT
1 TTATT-ATTT
8868884 TTATTATTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 15 0.48
14 16 0.52
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.66
Consensus pattern (14 bp):
TTATTATTTGAATT
Found at i:8868898 original size:18 final size:17
Alignment explanation
Indices: 8868873--8868932 Score: 72
Period size: 18 Copynumber: 3.6 Consensus size: 17
8868863 TTTATTTGAT
8868873 TTTATTCATTTTTATTA
1 TTTATTCATTTTTATTA
*
8868890 TTGTATTCA-TTATATTA
1 TT-TATTCATTTTTATTA
8868907 -TT-TTCATTTTTATTA
1 TTTATTCATTTTTATTA
8868922 TTTATGTCATT
1 TTTAT-TCATT
8868933 ATTTCGTTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
14 4 0.11
15 8 0.22
16 3 0.08
17 10 0.28
18 11 0.31
ACGTcount: A:0.23, C:0.07, G:0.03, T:0.67
Consensus pattern (17 bp):
TTTATTCATTTTTATTA
Found at i:8869445 original size:773 final size:773
Alignment explanation
Indices: 8867811--8869429 Score: 3150
Period size: 773 Copynumber: 2.1 Consensus size: 773
8867801 ATTTTTTAGT
*
8867811 TTTTCGACACTAAGACATTAAGTAATCAACTAGGTACCAATTTTGGGCGTATCGAGGGTGCTAAT
1 TTTTCGACACCAAGACATTAAGTAATCAACTAGGTACCAATTTTGGGCGTATCGAGGGTGCTAAT
*
8867876 CCTTCCTCGTGCGTAACTGACTCCCGAACCCGTTTTTTTGAATTTCGTGGACCAAAATCGTTGTT
66 CCTTCCTCGTGCGTAACTGACTCCCGAACCCGTTTTTCTGAATTTCGTGGACCAAAATCGTTGTT
8867941 TTAATAAAATTAAATCGTTTATTAAAAACAACAACTTTTGAGGTGATCCGATCACACCTCATCAA
131 TTAATAAAATTAAATCGTTTATTAAAAACAACAACTTTTGAGGTGATCCGATCACACCTCATCAA
8868006 AAAGGATCGGTGGCGACTCCCGTTTTCCATCAAAAAATGGTGTCAACACGTATCATTATTATATA
196 AAAGGATCGGTGGCGACTCCCGTTTTCCATCAAAAAATGGTGTCAACACGTATCATTATTATATA
8868071 ATATTATTATTTGAATTTTTTTATTTGATTTTATTCATTTTTATTATTGTATTCATTATATTATT
261 ATATTATTATTTGAATTTTTTTATTTGATTTTATTCATTTTTATTATTGTATTCATTATATTATT
8868136 TTCATTTTTATTATTTATGTCATTATTTCGTTAAATGTCATAATTTTTCCAACATCATGTATTGT
326 TTCATTTTTATTATTTATGTCATTATTTCGTTAAATGTCATAATTTTTCCAACATCATGTATTGT
8868201 AAATATTAGTACATAAATTCATTTGTTTTTCTGTGCAAACGCATAACAAAAATAAATAATTTAAG
391 AAATATTAGTACATAAATTCATTTGTTTTTCTGTGCAAACGCATAACAAAAATAAATAATTTAAG
*
8868266 ACCGAGGCAATATTCTTTGTTTCAGAATCTTAGGGGTCATGGTCCTAACTTACAGAGTATGACTT
456 ACCGAGGCAATATTCTTTGTTTCAGAATATTAGGGGTCATGGTCCTAACTTACAGAGTATGACTT
*
8868331 TCTTCTTGAACCGAAGTAATCGAATATCCTGTTTAAAATGAAAACACCTAGGATTTAGATAATAA
521 TCTTCTTGAACCGAAGTAATCGAATATCCTGTTTAAAATGAAAACACATAGGATTTAGATAATAA
*
8868396 TCAAACGGAGATTATTCTTGTTTTCGAAGATTCGAGACATAATACCCTAACTTACGAGGCATGAT
586 TCAAACGGAGATTATTCTTGTTTTCAAAGATTCGAGACATAATACCCTAACTTACGAGGCATGAT
8868461 CTTTTCTTCTCGATTGACTCAAAATAAAGCCTTTTCCACAAAATTTAATTTAGTTAGCAATAGTT
651 CTTTTCTTCTCGATTGACTCAAAATAAAGCCTTTTCCACAAAATTTAATTTAGTTAGCAATAGTT
8868526 TAATCAAATAACATCATGCAAAGATCGATCATATTTTAAATTCGCTTCGAATTTTCAA
716 TAATCAAATAACATCATGCAAAGATCGATCATATTTTAAATTCGCTTCGAATTTTCAA
8868584 TTTTCGACACCAAGACATTAAGTAATCAACTAGGTACCAATTTTGGGCGTATCGAGGGTGCTAAT
1 TTTTCGACACCAAGACATTAAGTAATCAACTAGGTACCAATTTTGGGCGTATCGAGGGTGCTAAT
8868649 CCTTCCTCGTGCGTAACTGACTCCCGAACCCGTTTTTCTGAATTTCGTGGACCAAAATCGTTGTT
66 CCTTCCTCGTGCGTAACTGACTCCCGAACCCGTTTTTCTGAATTTCGTGGACCAAAATCGTTGTT
8868714 TTAATAAAATTAAATCGTTTATTAAAAACAACAACTTTTGAGGTGATCCGATCACACCTCATCAA
131 TTAATAAAATTAAATCGTTTATTAAAAACAACAACTTTTGAGGTGATCCGATCACACCTCATCAA
8868779 AAAGGATCGGTGGCGACTCCCGTTTTCCATCAAAAAATGGTGTCAACACGTATCATTATTATATA
196 AAAGGATCGGTGGCGACTCCCGTTTTCCATCAAAAAATGGTGTCAACACGTATCATTATTATATA
8868844 ATATTATTATTTGAATTTTTTTATTTGATTTTATTCATTTTTATTATTGTATTCATTATATTATT
261 ATATTATTATTTGAATTTTTTTATTTGATTTTATTCATTTTTATTATTGTATTCATTATATTATT
8868909 TTCATTTTTATTATTTATGTCATTATTTCGTTAAATGTCATAATTTTTCCAACATCATGTATTGT
326 TTCATTTTTATTATTTATGTCATTATTTCGTTAAATGTCATAATTTTTCCAACATCATGTATTGT
8868974 AAATATTAGTACATAAATTCATTTGTTTTTCTGTGCAAACGCATAACAAAAATAAATAATTTAAG
391 AAATATTAGTACATAAATTCATTTGTTTTTCTGTGCAAACGCATAACAAAAATAAATAATTTAAG
8869039 ACCGAGGCAATATTCTTTGTTTCAGAATATTAGGGGTCATGGTCCTAACTTACAGAGTATGACTT
456 ACCGAGGCAATATTCTTTGTTTCAGAATATTAGGGGTCATGGTCCTAACTTACAGAGTATGACTT
8869104 TCTTCTTGAACCGAAGTAATCGAATATCCTGTTTAAAATGAAAACACATAGGATTTAGATAATAA
521 TCTTCTTGAACCGAAGTAATCGAATATCCTGTTTAAAATGAAAACACATAGGATTTAGATAATAA
8869169 TCAAACGGAGATTATTCTTGTTTTCAAAGATTCGAGACATAATACCCTAACTTACGAGGCATGAT
586 TCAAACGGAGATTATTCTTGTTTTCAAAGATTCGAGACATAATACCCTAACTTACGAGGCATGAT
8869234 CTTTTCTTCTCGATTGACTCAAAATAAAGCCTTTTCCACAAAATTTAATTTAGTTAGCAATAGTT
651 CTTTTCTTCTCGATTGACTCAAAATAAAGCCTTTTCCACAAAATTTAATTTAGTTAGCAATAGTT
8869299 TAATCAAATAACATCATGCAAAGATCGATCATATTTTAAATTCGCTTCGAATTTTCAA
716 TAATCAAATAACATCATGCAAAGATCGATCATATTTTAAATTCGCTTCGAATTTTCAA
* * *
8869357 TTTTCGACACCAAGACATCAAGTAATCAACTAGGTACCAATTTTGGGCGTTAT-AAGGGTGCCAA
1 TTTTCGACACCAAGACATTAAGTAATCAACTAGGTACCAATTTTGGGCG-TATCGAGGGTGCTAA
8869421 TCCTTCCTC
65 TCCTTCCTC
8869430 ATATGTAATT
Statistics
Matches: 837, Mismatches: 8, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
773 834 1.00
774 3 0.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (773 bp):
TTTTCGACACCAAGACATTAAGTAATCAACTAGGTACCAATTTTGGGCGTATCGAGGGTGCTAAT
CCTTCCTCGTGCGTAACTGACTCCCGAACCCGTTTTTCTGAATTTCGTGGACCAAAATCGTTGTT
TTAATAAAATTAAATCGTTTATTAAAAACAACAACTTTTGAGGTGATCCGATCACACCTCATCAA
AAAGGATCGGTGGCGACTCCCGTTTTCCATCAAAAAATGGTGTCAACACGTATCATTATTATATA
ATATTATTATTTGAATTTTTTTATTTGATTTTATTCATTTTTATTATTGTATTCATTATATTATT
TTCATTTTTATTATTTATGTCATTATTTCGTTAAATGTCATAATTTTTCCAACATCATGTATTGT
AAATATTAGTACATAAATTCATTTGTTTTTCTGTGCAAACGCATAACAAAAATAAATAATTTAAG
ACCGAGGCAATATTCTTTGTTTCAGAATATTAGGGGTCATGGTCCTAACTTACAGAGTATGACTT
TCTTCTTGAACCGAAGTAATCGAATATCCTGTTTAAAATGAAAACACATAGGATTTAGATAATAA
TCAAACGGAGATTATTCTTGTTTTCAAAGATTCGAGACATAATACCCTAACTTACGAGGCATGAT
CTTTTCTTCTCGATTGACTCAAAATAAAGCCTTTTCCACAAAATTTAATTTAGTTAGCAATAGTT
TAATCAAATAACATCATGCAAAGATCGATCATATTTTAAATTCGCTTCGAATTTTCAA
Found at i:8872370 original size:17 final size:17
Alignment explanation
Indices: 8872348--8872385 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
8872338 GTTGGAATTC
8872348 TTTAAAGATATCAAGGG
1 TTTAAAGATATCAAGGG
8872365 TTTAAAGATATCAAGGG
1 TTTAAAGATATCAAGGG
8872382 TTTA
1 TTTA
8872386 GAGGGGAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.39, C:0.05, G:0.21, T:0.34
Consensus pattern (17 bp):
TTTAAAGATATCAAGGG
Found at i:8876945 original size:13 final size:14
Alignment explanation
Indices: 8876927--8876985 Score: 50
Period size: 14 Copynumber: 4.2 Consensus size: 14
8876917 TATTAATTGA
*
8876927 ATTTTTTTATT-TT
1 ATTTTTTCATTATT
8876940 ATTTTTTCATTATT
1 ATTTTTTCATTATT
*
8876954 ATTGTATTCATTA-T
1 ATT-TTTTCATTATT
* *
8876968 ATTATTGTCATTTTT
1 ATT-TTTTCATTATT
8876983 ATT
1 ATT
8876986 ATTTATGTTA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
13 10 0.27
14 15 0.41
15 12 0.32
ACGTcount: A:0.22, C:0.05, G:0.03, T:0.69
Consensus pattern (14 bp):
ATTTTTTCATTATT
Found at i:8878457 original size:18 final size:17
Alignment explanation
Indices: 8878434--8878468 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
8878424 AGAATAGATT
8878434 TTAATTAAATAAATTTAA
1 TTAATTAAA-AAATTTAA
8878452 TTAATTAAAAAATTTAA
1 TTAATTAAAAAATTTAA
8878469 ACCCTAAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
TTAATTAAAAAATTTAA
Found at i:8878530 original size:5 final size:5
Alignment explanation
Indices: 8878520--8878555 Score: 72
Period size: 5 Copynumber: 7.2 Consensus size: 5
8878510 TGAGCATTCG
8878520 ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA A
8878556 AATTTTCGAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:8879353 original size:30 final size:30
Alignment explanation
Indices: 8879310--8879367 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
8879300 AGGTGAGATG
* *
8879310 GGAAGGGAATAAAAGTTTTAGGGGAAAAGT
1 GGAAGAGAATAAAAATTTTAGGGGAAAAGT
* *
8879340 GGAAGAGAGTAAAAATTTTGGGGGAAAA
1 GGAAGAGAATAAAAATTTTAGGGGAAAA
8879368 TAAAAGGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.45, C:0.00, G:0.36, T:0.19
Consensus pattern (30 bp):
GGAAGAGAATAAAAATTTTAGGGGAAAAGT
Found at i:8879578 original size:126 final size:126
Alignment explanation
Indices: 8879434--8879685 Score: 488
Period size: 126 Copynumber: 2.0 Consensus size: 126
8879424 TAAAATTTTG
8879434 GTGGGAAATGGATTTTGGGTAGATTGGGGGGTTGGGAGGGGAGGGGAGTAAAAGTTTT-GGGGGA
1 GTGGGAAATGGATTTTGGGTAGATTGGGGGGTTGGGAGGGGAGGGGAGTAAAAGTTTTGGGGGGA
8879498 GAAGTGGGAAGGAGTAAAAGTTTTGAGGGAAAAGTAAAAAGGTTTGGGAGTTTGGGGTAAAA
66 -AAGTGGGAAGGAGTAAAAGTTTTGAGGGAAAAGTAAAAAGGTTTGGGAGTTTGGGGTAAAA
8879560 GTGGGAAATGGATTTTGGGTAGATTGGGGGGTTGGGAGGGGAGGGGAGTAAAAGTTTTGGGGGGA
1 GTGGGAAATGGATTTTGGGTAGATTGGGGGGTTGGGAGGGGAGGGGAGTAAAAGTTTTGGGGGGA
8879625 AAGTGGGAAGGAGTAAAAGTTTTGAGGGAAAAGTAAAAAGGTTTGGGAGTTTGGGGTAAAA
66 AAGTGGGAAGGAGTAAAAGTTTTGAGGGAAAAGTAAAAAGGTTTGGGAGTTTGGGGTAAAA
8879686 ATGTAAAATA
Statistics
Matches: 125, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
126 119 0.95
127 6 0.05
ACGTcount: A:0.30, C:0.00, G:0.46, T:0.24
Consensus pattern (126 bp):
GTGGGAAATGGATTTTGGGTAGATTGGGGGGTTGGGAGGGGAGGGGAGTAAAAGTTTTGGGGGGA
AAGTGGGAAGGAGTAAAAGTTTTGAGGGAAAAGTAAAAAGGTTTGGGAGTTTGGGGTAAAA
Found at i:8880681 original size:18 final size:17
Alignment explanation
Indices: 8880650--8880684 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
8880640 GATTTAGGGT
8880650 TTAAATTTTTTAATTAA
1 TTAAATTTTTTAATTAA
8880667 TTAAATTTATTTAATTAA
1 TTAAATTT-TTTAATTAA
8880685 AAATCAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TTAAATTTTTTAATTAA
Found at i:8880986 original size:19 final size:21
Alignment explanation
Indices: 8880950--8880989 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
8880940 ATGATTTTAA
8880950 ATTATAAAAAATAATATTAATT
1 ATTATAAAAAAT-ATATTAATT
8880972 ATTAT-AAAAAT-TATTAAT
1 ATTATAAAAAATATATTAAT
8880990 AAAACTTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.39
21 6 0.33
22 5 0.28
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
ATTATAAAAAATATATTAATT
Found at i:8901703 original size:17 final size:18
Alignment explanation
Indices: 8901681--8901722 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
8901671 GTTTAGAAAT
8901681 TATTTTTATCA-T-ACTAA
1 TATTTTTAT-AGTAACTAA
8901698 TATTTTTTATAGTAACTAA
1 TA-TTTTTATAGTAACTAA
8901717 TATTTT
1 TATTTT
8901723 AAAAAATGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 3 0.14
18 12 0.55
19 7 0.32
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.57
Consensus pattern (18 bp):
TATTTTTATAGTAACTAA
Found at i:8904910 original size:5 final size:5
Alignment explanation
Indices: 8904900--8904928 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
8904890 TCTTGTAAAT
8904900 ATTTG ATTTG ATTTG ATTTG ATTTG ATTT
1 ATTTG ATTTG ATTTG ATTTG ATTTG ATTT
8904929 AATGTAACGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.21, C:0.00, G:0.17, T:0.62
Consensus pattern (5 bp):
ATTTG
Found at i:8911489 original size:54 final size:53
Alignment explanation
Indices: 8911401--8911505 Score: 138
Period size: 54 Copynumber: 2.0 Consensus size: 53
8911391 ACAGGGGCAT
* * *
8911401 GTGTCCAGACCATGTAACTCTCTGACTTCAGTCACACGAGCATGTGTCAGGCC
1 GTGTCCAGACCATATAACTCTCTGACTTCAGTCACACGACCATGTGCCAGGCC
* ** *
8911454 GTGTACCAGACCGTATAACTCTCTGACTTGGGTCACTCGACCATGTGCCAGG
1 GTGT-CCAGACCATATAACTCTCTGACTTCAGTCACACGACCATGTGCCAGG
8911506 AAATGTGAGG
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
53 4 0.09
54 40 0.91
ACGTcount: A:0.22, C:0.30, G:0.24, T:0.25
Consensus pattern (53 bp):
GTGTCCAGACCATATAACTCTCTGACTTCAGTCACACGACCATGTGCCAGGCC
Found at i:8914299 original size:42 final size:42
Alignment explanation
Indices: 8914181--8914300 Score: 125
Period size: 42 Copynumber: 2.9 Consensus size: 42
8914171 TGATTTAGGA
* * * *** *
8914181 CCACACGACCAAGGACATGGACGTGTGCCCAAGCCATGTGGG
1 CCACACGAGCAAGGACATGGGCGTGTGTCCAAGCTGCGTGAG
* * * *
8914223 CCACATGGGCAAAGACATGAGCGTGT-TCCCAAGCTGCGTGAG
1 CCACACGAGCAAGGACATGGGCGTGTGT-CCAAGCTGCGTGAG
8914265 CCACACGAGCAAGGACATGGGCGTGTGTCCAAGCTG
1 CCACACGAGCAAGGACATGGGCGTGTGTCCAAGCTG
8914301 TGTAACTCAC
Statistics
Matches: 61, Mismatches: 15, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
42 60 0.98
43 1 0.02
ACGTcount: A:0.26, C:0.28, G:0.32, T:0.14
Consensus pattern (42 bp):
CCACACGAGCAAGGACATGGGCGTGTGTCCAAGCTGCGTGAG
Found at i:8914341 original size:146 final size:146
Alignment explanation
Indices: 8914087--8914357 Score: 411
Period size: 146 Copynumber: 1.9 Consensus size: 146
8914077 CCACACGACA
* * * *
8914087 AAAGACATGGACGTGTGCCCAGGCCGTGTGAGCCACACGGGCAAGGACATGGGCCTGTGTCCAGG
1 AAAGACATGGACGTGTGCCCAAGCCGCGTGAGCCACACGAGCAAGGACATGGGCCTGTGTCCAAG
*
8914152 CTGTATAACTCACTATTTATGATTTAGGACCACACGACCAAGGACAT-GGACGTGTGCCCAAGCC
66 CTGTATAACTCACTATTTATGATTTAAGACCACACGACCAAGGACATAGG-CGTGTGCCCAAGCC
8914216 ATGTGGGCCACATGGGC
130 ATGTGGGCCACATGGGC
* * *
8914233 AAAGACAT-GAGCGTGTTCCCAAGCTGCGTGAGCCACACGAGCAAGGACATGGGCGTGTGTCCAA
1 AAAGACATGGA-CGTGTGCCCAAGCCGCGTGAGCCACACGAGCAAGGACATGGGCCTGTGTCCAA
* * *
8914297 GCTGTGTAACTCACTATTTATGATTTAAGACCACACGACTAAGGACATAGGTGTGTGCCCA
65 GCTGTATAACTCACTATTTATGATTTAAGACCACACGACCAAGGACATAGGCGTGTGCCCA
8914358 GGTCGTGTGA
Statistics
Matches: 112, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
145 2 0.02
146 108 0.96
147 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.28, T:0.20
Consensus pattern (146 bp):
AAAGACATGGACGTGTGCCCAAGCCGCGTGAGCCACACGAGCAAGGACATGGGCCTGTGTCCAAG
CTGTATAACTCACTATTTATGATTTAAGACCACACGACCAAGGACATAGGCGTGTGCCCAAGCCA
TGTGGGCCACATGGGC
Found at i:8918194 original size:27 final size:27
Alignment explanation
Indices: 8918157--8918586 Score: 426
Period size: 27 Copynumber: 16.2 Consensus size: 27
8918147 AGAGGTCAAT
* *
8918157 AAATGATCGAAATACCCCCATATGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
*
8918184 AAATGACCGAAATACCCTCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * *
8918211 AAATGATCGAAATACCCCCAGAGGATA
1 AAATGACCGAAATACCCCCATAGGGTA
*
8918238 AAATGATCGAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * * * *
8918265 AAATAACCAAAATACCCTCACAGAGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
8918292 AAATGACTGAAATACCCTCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
8918319 AAATGACCAAAATACCCCCATAAGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * * *
8918346 AAATAATCGAAATACTCTCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
** **
8918373 AAATGATTGAAATATTCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * * * * *
8918400 AAATAATCGAAATACCTCCATAAGTTC
1 AAATGACCGAAATACCCCCATAGGGTA
*
8918427 TAATGACCGAAATA-----A-A--GTA
1 AAATGACCGAAATACCCCCATAGGGTA
*
8918446 AAATGACTGAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
8918473 AAATAACTGAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * *
8918500 AAATAACCGAAATACTCCCATATGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * *
8918527 GAATAACCGAAATACCCCAATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
8918554 AAATGATCGAAACACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
8918581 AAATGA
1 AAATGA
8918587 TTGTTATACC
Statistics
Matches: 333, Mismatches: 62, Indels: 16
0.81 0.15 0.04
Matches are distributed among these distances:
19 13 0.04
21 1 0.00
22 1 0.00
24 1 0.00
25 1 0.00
27 316 0.95
ACGTcount: A:0.44, C:0.21, G:0.15, T:0.20
Consensus pattern (27 bp):
AAATGACCGAAATACCCCCATAGGGTA
Found at i:8918536 original size:100 final size:100
Alignment explanation
Indices: 8918354--8918540 Score: 250
Period size: 100 Copynumber: 1.9 Consensus size: 100
8918344 TAAAATAATC
* * * * ** *
8918354 GAAATACTCTCATAGGGTAAAATGATTGAAATATTCCCATAGGGTAAAATAATCGAAATACCTCC
1 GAAATACCCCCATAGGGTAAAATAACTGAAATACCCCCATAGGGTAAAATAACCGAAATACCTCC
* ** *
8918419 ATAAGTTCTAATGACCGAAATAAAGTAAAATGACT
66 ATAAGGTAGAATAACCGAAATAAAGTAAAATGACT
8918454 GAAATACCCCCATAGGGTAAAATAACTGAAATACCCCCATAGGGTAAAATAACCGAAATA-CTCC
1 GAAATACCCCCATAGGGTAAAATAACTGAAATACCCCCATAGGGTAAAATAACCGAAATACCT-C
*
8918518 CATATGGTAGAATAACCGAAATA
65 CATAAGGTAGAATAACCGAAATA
8918541 CCCCAATAGG
Statistics
Matches: 74, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
99 2 0.03
100 72 0.97
ACGTcount: A:0.44, C:0.18, G:0.15, T:0.22
Consensus pattern (100 bp):
GAAATACCCCCATAGGGTAAAATAACTGAAATACCCCCATAGGGTAAAATAACCGAAATACCTCC
ATAAGGTAGAATAACCGAAATAAAGTAAAATGACT
Found at i:8922077 original size:85 final size:86
Alignment explanation
Indices: 8921975--8922169 Score: 220
Period size: 85 Copynumber: 2.3 Consensus size: 86
8921965 ATACAATGCC
* ** *
8921975 ATATCCCAGATATGGTCTTACATGTTATCACATATCAAT-CTCAATAG-CCCAG-CTATGGTCTT
1 ATATCCCAGATATGGTCTTACACGAAATCACATAACAATAC-CAAT-GTCCCAGAC-ATGGTCTT
*
8922037 GCACG-AAT-CATATATCGATGCTA
63 ACACGTAATACATATATCGATG-TA
* * * *
8922060 ATGTCCCAGACATGGTCTTACACGAAATCACGTAACGATACCAATGTCCCAGACATGGTCTTACA
1 ATATCCCAGATATGGTCTTACACGAAATCACATAACAATACCAATGTCCCAGACATGGTCTTACA
*
8922125 CGTAATCACATATATCGATGTC
66 CGTAAT-ACATATATCGATGTA
8922147 ATATCCCAGATATGGTCTTACAC
1 ATATCCCAGATATGGTCTTACAC
8922170 AAAGTCTCAT
Statistics
Matches: 92, Mismatches: 12, Indels: 10
0.81 0.11 0.09
Matches are distributed among these distances:
84 1 0.01
85 52 0.57
86 5 0.05
87 22 0.24
88 12 0.13
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (86 bp):
ATATCCCAGATATGGTCTTACACGAAATCACATAACAATACCAATGTCCCAGACATGGTCTTACA
CGTAATACATATATCGATGTA
Found at i:8922169 original size:44 final size:44
Alignment explanation
Indices: 8921974--8922220 Score: 204
Period size: 43 Copynumber: 5.7 Consensus size: 44
8921964 CATACAATGC
* ** * *
8921974 CATATCCCAGATATGGTCTTACATGTTATCAC--ATATCAATCT
1 CATATCCCAGATATGGTCTTACACGAAATCACATATATCGATGT
* * *
8922016 CAATAGCCCAGCTATGGTCTTGCACG-AAT--CATATATCGATGCT
1 C-ATATCCCAGATATGGTCTTACACGAAATCACATATATCGATG-T
* * * * **
8922059 AATGTCCCAGACATGGTCTTACACGAAATCACGTA-A-CGATAC
1 CATATCCCAGATATGGTCTTACACGAAATCACATATATCGATGT
* * *
8922101 CAATGTCCCAGACATGGTCTTACACGTAATCACATATATCGATGT
1 C-ATATCCCAGATATGGTCTTACACGAAATCACATATATCGATGT
*
8922146 CATATCCCAGATATGGTCTTACAC-AAAGTCTCATATATCGATGT
1 CATATCCCAGATATGGTCTTACACGAAA-TCACATATATCGATGT
* * * *
8922190 CATAGCCTAGCTATGGTCTTATACGAAATCA
1 CATATCCCAGATATGGTCTTACACGAAATCA
8922221 TGTAATGCCA
Statistics
Matches: 163, Mismatches: 30, Indels: 22
0.76 0.14 0.10
Matches are distributed among these distances:
40 1 0.01
42 29 0.18
43 62 0.38
44 60 0.37
45 11 0.07
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (44 bp):
CATATCCCAGATATGGTCTTACACGAAATCACATATATCGATGT
Found at i:8927035 original size:22 final size:22
Alignment explanation
Indices: 8927010--8927064 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
8927000 GGGGTTTGGA
*
8927010 CTCTGAATCTGAATTTGATATG
1 CTCTGAATCTGAATCTGATATG
* *
8927032 CTCTGGATCTAAATCTGATATG
1 CTCTGAATCTGAATCTGATATG
*
8927054 CTCTGCATCTG
1 CTCTGAATCTG
8927065 TACCTATTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (22 bp):
CTCTGAATCTGAATCTGATATG
Found at i:8933808 original size:45 final size:45
Alignment explanation
Indices: 8933714--8933832 Score: 125
Period size: 45 Copynumber: 2.6 Consensus size: 45
8933704 AGAAAATGAT
**** *
8933714 TAAGACCATAGTTGAAAGACACTATGGCACTATATTGGAAATAAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATACCAAAAACAAA
* * *
8933759 TAAGACCATGGTTGAAAGACACTATGGCACCT-TACCAAAAACGAG
1 TAAGACCATAGTTGAAAGACACTATGGCA-CTATACCAAAAACAAA
*
8933804 TAAGACCATAGTT-AAAGGACATTATGGCA
1 TAAGACCATAGTTGAAA-GACACTATGGCA
8933833 TCACAATTCT
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 3 0.05
45 57 0.92
46 2 0.03
ACGTcount: A:0.42, C:0.17, G:0.19, T:0.22
Consensus pattern (45 bp):
TAAGACCATAGTTGAAAGACACTATGGCACTATACCAAAAACAAA
Found at i:8934026 original size:46 final size:46
Alignment explanation
Indices: 8933932--8934103 Score: 179
Period size: 46 Copynumber: 3.8 Consensus size: 46
8933922 ATCACAAATC
* * * * *
8933932 AAATGAATAAGACCATAGTT-AAAAACACTATGGCAATACGACGAA
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCAACAAGATGGA
* * *
8933977 AAATGAATAAGATCATAGTTGAAAGACACTATGACAACATGATGGA
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCAACAAGATGGA
* * *
8934023 AAATGAATAAGACCATCGTTGAAAGACACTATGGCATCAAG-TCGA
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCAACAAGATGGA
* * * *
8934068 GAATAAATAAGAACATGGTTGAAAGACA-TCATGGCA
1 AAATGAATAAGACCATAGTTGAAAGACACT-ATGGCA
8934104 CCCTTCATCT
Statistics
Matches: 108, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
44 1 0.01
45 52 0.48
46 55 0.51
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.20
Consensus pattern (46 bp):
AAATGAATAAGACCATAGTTGAAAGACACTATGGCAACAAGATGGA
Found at i:8936980 original size:6 final size:7
Alignment explanation
Indices: 8936961--8936988 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
8936951 AAAGATGAAC
8936961 TCTTTTT
1 TCTTTTT
8936968 TCTTTTT
1 TCTTTTT
8936975 TCTTTTT
1 TCTTTTT
8936982 TCTTTTT
1 TCTTTTT
8936989 GCGTTGAGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (7 bp):
TCTTTTT
Found at i:8940901 original size:35 final size:34
Alignment explanation
Indices: 8940855--8941040 Score: 162
Period size: 35 Copynumber: 5.4 Consensus size: 34
8940845 AATATCGTCG
* *
8940855 GTTTATCCAACTAGCGCTGGGCGCAACTTCCTTCA
1 GTTTATCCGACTAGCGCTAGGCGCAACTT-CTTCA
* * *
8940890 GTTTATCCAACTACCGCTAGGCGTAACTTCTGTCA
1 GTTTATCCGACTAGCGCTAGGCGCAACTTCT-TCA
* * * * *
8940925 ATTTATCTGACTAGTGCTAGGCAC-ACATTCGTCA
1 GTTTATCCGACTAGCGCTAGGCGCAAC-TTCTTCA
* *
8940959 ATTTATCCGACTAGCGCTAGGCGCAACTTCCATCA
1 GTTTATCCGACTAGCGCTAGGCGCAACTT-CTTCA
* * *
8940994 GTTTATCTGACTAGTGCT-GG-GCACACATTCTTCG
1 GTTTATCCGACTAGCGCTAGGCGCA-AC-TTCTTCA
8941028 GTTTATCCGACTA
1 GTTTATCCGACTA
8941041 ACATTGGACG
Statistics
Matches: 124, Mismatches: 21, Indels: 13
0.78 0.13 0.08
Matches are distributed among these distances:
33 3 0.02
34 49 0.40
35 72 0.58
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (34 bp):
GTTTATCCGACTAGCGCTAGGCGCAACTTCTTCA
Found at i:8940964 original size:34 final size:34
Alignment explanation
Indices: 8940921--8941023 Score: 127
Period size: 34 Copynumber: 3.0 Consensus size: 34
8940911 CGTAACTTCT
8940921 GTCAATTTATCTGACTAGTGCTAGGCACACATTC
1 GTCAATTTATCTGACTAGTGCTAGGCACACATTC
* * *
8940955 GTCAATTTATCCGACTAGCGCTAGGCGCA-ACTTCC
1 GTCAATTTATCTGACTAGTGCTAGGCACACA-TT-C
* * *
8940990 ATCAGTTTATCTGACTAGTGCTGGGCACACATTC
1 GTCAATTTATCTGACTAGTGCTAGGCACACATTC
8941024 TTCGGTTTAT
Statistics
Matches: 57, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
33 1 0.02
34 29 0.51
35 26 0.46
36 1 0.02
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.30
Consensus pattern (34 bp):
GTCAATTTATCTGACTAGTGCTAGGCACACATTC
Found at i:8940977 original size:69 final size:69
Alignment explanation
Indices: 8940891--8941040 Score: 210
Period size: 69 Copynumber: 2.2 Consensus size: 69
8940881 CTTCCTTCAG
* * **
8940891 TTTATCCAACTACCGCTAGGCGTAACTTCTGTCAATTTATCTGACTAGTGCTAGGCACACATTCG
1 TTTATCCGACTACCGCTAGGCGCAACTTCCATCAATTTATCTGACTAGTGCTAGGCACACATTCG
8940956 TCAA
66 TCAA
* * * *
8940960 TTTATCCGACTAGCGCTAGGCGCAACTTCCATCAGTTTATCTGACTAGTGCTGGGCACACATTCT
1 TTTATCCGACTACCGCTAGGCGCAACTTCCATCAATTTATCTGACTAGTGCTAGGCACACATTCG
**
8941025 TCGG
66 TCAA
8941029 TTTATCCGACTA
1 TTTATCCGACTA
8941041 ACATTGGACG
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
69 71 1.00
ACGTcount: A:0.23, C:0.27, G:0.18, T:0.32
Consensus pattern (69 bp):
TTTATCCGACTACCGCTAGGCGCAACTTCCATCAATTTATCTGACTAGTGCTAGGCACACATTCG
TCAA
Found at i:8941040 original size:34 final size:34
Alignment explanation
Indices: 8940926--8941040 Score: 117
Period size: 34 Copynumber: 3.4 Consensus size: 34
8940916 CTTCTGTCAA
* * * *
8940926 TTTATCTGACTAGTGCTAGGCACACATTCGTCAA
1 TTTATCCGACTAGTGCTGGGCACACATTCATCAG
*
8940960 TTTATCCGACTAGCGCTAGGCGCA-AC-TTCCATCAG
1 TTTATCCGACTAGTGCT-GG-GCACACATT-CATCAG
* * *
8940995 TTTATCTGACTAGTGCTGGGCACACATTCTTCGG
1 TTTATCCGACTAGTGCTGGGCACACATTCATCAG
8941029 TTTATCCGACTA
1 TTTATCCGACTA
8941041 ACATTGGACG
Statistics
Matches: 66, Mismatches: 10, Indels: 10
0.77 0.12 0.12
Matches are distributed among these distances:
33 3 0.05
34 36 0.55
35 24 0.36
36 3 0.05
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (34 bp):
TTTATCCGACTAGTGCTGGGCACACATTCATCAG
Found at i:8948980 original size:5 final size:5
Alignment explanation
Indices: 8948972--8949005 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
8948962 ATTTTTATTT
*
8948972 TTATA TTATA TTATA TTGTA TTATA TTATA TTAT
1 TTATA TTATA TTATA TTATA TTATA TTATA TTAT
8949006 TGATTGATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (5 bp):
TTATA
Found at i:8956166 original size:35 final size:35
Alignment explanation
Indices: 8956119--8956210 Score: 112
Period size: 35 Copynumber: 2.6 Consensus size: 35
8956109 ATGAATGTGT
* ** *
8956119 GCCTAGCACTAGTCAGATAAACTGACGGAAGTTGT
1 GCCTAGCGCTAGTTGGATAAACTGACGGAAGTTGC
* * * *
8956154 GCCTGGTGCTAGTTGGATAAATTGATGGAAGTTGC
1 GCCTAGCGCTAGTTGGATAAACTGACGGAAGTTGC
8956189 GCCTAGCGCTAGTTGGATAAAC
1 GCCTAGCGCTAGTTGGATAAAC
8956211 CAACGAATGT
Statistics
Matches: 46, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
35 46 1.00
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.26
Consensus pattern (35 bp):
GCCTAGCGCTAGTTGGATAAACTGACGGAAGTTGC
Found at i:8959341 original size:25 final size:25
Alignment explanation
Indices: 8959259--8959352 Score: 109
Period size: 25 Copynumber: 3.8 Consensus size: 25
8959249 CATGTACATA
*
8959259 TATGCTCAT-ACGAGCTGTAAATCGG
1 TATGCTC-TCACGAGCTATAAATCGG
* * * * *
8959284 TATGCTCACTCGAGCTGTAGATTGG
1 TATGCTCTCACGAGCTATAAATCGG
8959309 TATGCTCTCACGAGCTATAAATCGG
1 TATGCTCTCACGAGCTATAAATCGG
*
8959334 TATGCTCTCACGAGTTATA
1 TATGCTCTCACGAGCTATA
8959353 GAGTATACAC
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
25 58 1.00
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (25 bp):
TATGCTCTCACGAGCTATAAATCGG
Found at i:8960118 original size:9 final size:9
Alignment explanation
Indices: 8960086--8960122 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
8960076 TGAGTTTTTG
8960086 AATTCGAAT
1 AATTCGAAT
*
8960095 AACTCGAAT
1 AATTCGAAT
8960104 AATTCGAAT
1 AATTCGAAT
*
8960113 AGTTCGAAT
1 AATTCGAAT
8960122 A
1 A
8960123 TCAAACTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:8966091 original size:28 final size:28
Alignment explanation
Indices: 8966060--8966120 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
8966050 AATTTTAAAA
*
8966060 TATTTATT-TTTAAATAAAATTATACATT
1 TATTTATTCTTGAAA-AAAATTATACATT
*
8966088 TATTTATTCTTGAGAAAAATTATACATT
1 TATTTATTCTTGAAAAAAATTATACATT
8966116 TATTT
1 TATTT
8966121 TAAATAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 26 0.87
29 4 0.13
ACGTcount: A:0.39, C:0.05, G:0.03, T:0.52
Consensus pattern (28 bp):
TATTTATTCTTGAAAAAAATTATACATT
Found at i:8970409 original size:13 final size:13
Alignment explanation
Indices: 8970391--8970418 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
8970381 CAAAATGGAG
8970391 TTGTGAAAATAAT
1 TTGTGAAAATAAT
8970404 TTGTGAAAATAAT
1 TTGTGAAAATAAT
8970417 TT
1 TT
8970419 ACCAAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (13 bp):
TTGTGAAAATAAT
Found at i:8979583 original size:25 final size:25
Alignment explanation
Indices: 8979542--8979633 Score: 96
Period size: 25 Copynumber: 3.7 Consensus size: 25
8979532 CCATTTTCAC
*
8979542 AGCTCGT-ATGAGCATACTGATTTAT
1 AGCTCGTGA-GAGTATACTGATTTAT
* *
8979567 AGCTTGTGAGAGTATACTAATTTAT
1 AGCTCGTGAGAGTATACTGATTTAT
* * * *
8979592 AGCTCATGAGAGCATACCGATTTAC
1 AGCTCGTGAGAGTATACTGATTTAT
*
8979617 AGCTCGTGTGAGTATAC
1 AGCTCGTGAGAGTATAC
8979634 ATGTACAAGA
Statistics
Matches: 54, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
25 53 0.98
26 1 0.02
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (25 bp):
AGCTCGTGAGAGTATACTGATTTAT
Found at i:8996110 original size:25 final size:25
Alignment explanation
Indices: 8996074--8996162 Score: 124
Period size: 25 Copynumber: 3.6 Consensus size: 25
8996064 TTTTCATAGT
* *
8996074 TCGTGTGAGCATACCGATTTACAGC
1 TCGTGAGAGCATACCGATTTACAAC
* *
8996099 TCGTGAGTGCATACCGATTTATAAC
1 TCGTGAGAGCATACCGATTTACAAC
*
8996124 TAGTGAGAGCATACCGATTTACAAC
1 TCGTGAGAGCATACCGATTTACAAC
*
8996149 TCGTGTGAGCATAC
1 TCGTGAGAGCATAC
8996163 ATGTACATGA
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 55 1.00
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (25 bp):
TCGTGAGAGCATACCGATTTACAAC
Found at i:8997167 original size:5 final size:5
Alignment explanation
Indices: 8997157--8997186 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
8997147 GTACAAAGTA
8997157 AAATT AAATT AAATT AAATT AAATT AAATT
1 AAATT AAATT AAATT AAATT AAATT AAATT
8997187 CTAAAAAGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AAATT
Found at i:9014222 original size:27 final size:27
Alignment explanation
Indices: 9014192--9014246 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
9014182 AAAAAACAAA
9014192 ACAAAG-GAAATAAAAATAAAGAAACCT
1 ACAAAGAGAAAT-AAAATAAAGAAACCT
* * *
9014219 ACAAAGAGAGATTAAATAATGAAACCT
1 ACAAAGAGAAATAAAATAAAGAAACCT
9014246 A
1 A
9014247 ACCTCAGTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 20 0.83
28 4 0.17
ACGTcount: A:0.62, C:0.11, G:0.13, T:0.15
Consensus pattern (27 bp):
ACAAAGAGAAATAAAATAAAGAAACCT
Found at i:9014329 original size:13 final size:15
Alignment explanation
Indices: 9014296--9014334 Score: 55
Period size: 13 Copynumber: 2.7 Consensus size: 15
9014286 GAAAGCCAAA
*
9014296 AAAGGAAGAAAAGTG
1 AAAGGAACAAAAGTG
9014311 AAAGGAACAAAA-T-
1 AAAGGAACAAAAGTG
9014324 AAAGGAACAAA
1 AAAGGAACAAA
9014335 CAGCTAAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 11 0.48
14 1 0.04
15 11 0.48
ACGTcount: A:0.67, C:0.05, G:0.23, T:0.05
Consensus pattern (15 bp):
AAAGGAACAAAAGTG
Found at i:9016168 original size:22 final size:23
Alignment explanation
Indices: 9016131--9016173 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
9016121 CTACATTCAG
9016131 TCTGAGTACCAACTAAACTGTAGA
1 TCTGAGTACCAACTAAA-TGTAGA
9016155 TCTGA-TACC-ACTAAATGTA
1 TCTGAGTACCAACTAAATGTA
9016174 ACACCTCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.21
22 6 0.32
23 4 0.21
24 5 0.26
ACGTcount: A:0.37, C:0.21, G:0.14, T:0.28
Consensus pattern (23 bp):
TCTGAGTACCAACTAAATGTAGA
Found at i:9021400 original size:25 final size:25
Alignment explanation
Indices: 9021366--9021432 Score: 109
Period size: 25 Copynumber: 2.7 Consensus size: 25
9021356 GTGGGATCTA
*
9021366 TGAAATCAATTAAAACGGTGCGTGG
1 TGAAATCAATTGAAACGGTGCGTGG
9021391 TGGAAA-CAATTGAAACGGTGCGTGG
1 T-GAAATCAATTGAAACGGTGCGTGG
9021416 TGAAATCAATTGAAACG
1 TGAAATCAATTGAAACG
9021433 AAATGGTCAG
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
24 4 0.10
25 31 0.79
26 4 0.10
ACGTcount: A:0.37, C:0.12, G:0.28, T:0.22
Consensus pattern (25 bp):
TGAAATCAATTGAAACGGTGCGTGG
Found at i:9021907 original size:52 final size:53
Alignment explanation
Indices: 9021805--9021909 Score: 140
Period size: 52 Copynumber: 2.0 Consensus size: 53
9021795 CAATTAAGAA
* * *
9021805 GTCTAACTTAATAACATGCATTGATACTGTTTGAACTAGAGCATAGTTAATAG
1 GTCTAACTTAATAACATGCATTGATACTGTCTGAACTAGAACATACTTAATAG
* * * *
9021858 GTCTGACTTAA-AACCTGCATTGATGCTGTCTGAATTAGAACATACTTAATAG
1 GTCTAACTTAATAACATGCATTGATACTGTCTGAACTAGAACATACTTAATAG
9021910 ACATAAATCA
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
52 35 0.78
53 10 0.22
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.33
Consensus pattern (53 bp):
GTCTAACTTAATAACATGCATTGATACTGTCTGAACTAGAACATACTTAATAG
Found at i:9022467 original size:43 final size:43
Alignment explanation
Indices: 9022409--9022547 Score: 131
Period size: 43 Copynumber: 3.2 Consensus size: 43
9022399 CACCAGGGTA
* *
9022409 CTGATGCTACTCGAGGCACTCGCACATCCAACGTCCTAGGTTG
1 CTGATGGTGCTCGAGGCACTCGCACATCCAACGTCCTAGGTTG
* * * * * *
9022452 CCGATGGTG-TCCGAGGCTCCCCCACATCTAAAG-CACTAGGGTT-
1 CTGATGGTGCT-CGAGGCACTCGCACATCCAACGTC-CTA-GGTTG
* * *
9022495 CTGATGCTGCTCAAGGCACTCGCACATCCAACGTCCTAGGCTG
1 CTGATGGTGCTCGAGGCACTCGCACATCCAACGTCCTAGGTTG
9022538 CTGATGGTGC
1 CTGATGGTGC
9022548 CTGAGTTTCC
Statistics
Matches: 72, Mismatches: 18, Indels: 12
0.71 0.18 0.12
Matches are distributed among these distances:
42 5 0.07
43 61 0.85
44 6 0.08
ACGTcount: A:0.20, C:0.32, G:0.25, T:0.22
Consensus pattern (43 bp):
CTGATGGTGCTCGAGGCACTCGCACATCCAACGTCCTAGGTTG
Found at i:9022533 original size:86 final size:86
Alignment explanation
Indices: 9022388--9022546 Score: 246
Period size: 86 Copynumber: 1.8 Consensus size: 86
9022378 CTTTAGCCCG
* * * *
9022388 CACATCTGAGGCACCAGGGTACTGATGCTACTCGAGGCACTCGCACATCCAACGTCCTAGGTTGC
1 CACATCTAAAGCACCAGGGTACTGATGCTACTCAAGGCACTCGCACATCCAACGTCCTAGGCTGC
9022453 CGATGGTGTCCGAGGCTCCCC
66 CGATGGTGTCCGAGGCTCCCC
* * *
9022474 CACATCTAAAGCACTAGGGTTCTGATGCTGCTCAAGGCACTCGCACATCCAACGTCCTAGGCTGC
1 CACATCTAAAGCACCAGGGTACTGATGCTACTCAAGGCACTCGCACATCCAACGTCCTAGGCTGC
*
9022539 TGATGGTG
66 CGATGGTG
9022547 CCTGAGTTTC
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
86 65 1.00
ACGTcount: A:0.21, C:0.31, G:0.26, T:0.21
Consensus pattern (86 bp):
CACATCTAAAGCACCAGGGTACTGATGCTACTCAAGGCACTCGCACATCCAACGTCCTAGGCTGC
CGATGGTGTCCGAGGCTCCCC
Found at i:9022612 original size:43 final size:43
Alignment explanation
Indices: 9022563--9022775 Score: 130
Period size: 42 Copynumber: 5.0 Consensus size: 43
9022553 TTTCCAGCAT
*
9022563 GACCAAGGGCCTAGGTTACCGATGGTGTCCGAGGCTCCCGTA-
1 GACCAAGGGCCTAGGTTACCGATGGTGTCCGAGGCTCCCGCAC
* ** * * *
9022605 TATCCAAGCACC-ATGG-TACCGATAGTGCCCGAAGCTCCCGCAC
1 GA-CCAAGGGCCTA-GGTTACCGATGGTGTCCGAGGCTCCCGCAC
* * * *
9022648 GACCAAGGGCCTAGGTTATCGATGGTGTTCAAGGCTCCTGCAC
1 GACCAAGGGCCTAGGTTACCGATGGTGTCCGAGGCTCCCGCAC
** * ** * ** * * *
9022691 -ATCCAAGCACC-AAGTTTTCGATGCTACCCAAAGCTCCCACAC
1 GA-CCAAGGGCCTAGGTTACCGATGGTGTCCGAGGCTCCCGCAC
* * * *
9022733 GACCAAGGGCCTATGTTGCTGATGGTGTCCAAGGCTCCCGCAC
1 GACCAAGGGCCTAGGTTACCGATGGTGTCCGAGGCTCCCGCAC
9022776 ATCCAAGCAC
Statistics
Matches: 124, Mismatches: 39, Indels: 15
0.70 0.22 0.08
Matches are distributed among these distances:
42 63 0.51
43 61 0.49
ACGTcount: A:0.23, C:0.32, G:0.25, T:0.20
Consensus pattern (43 bp):
GACCAAGGGCCTAGGTTACCGATGGTGTCCGAGGCTCCCGCAC
Found at i:9022662 original size:85 final size:85
Alignment explanation
Indices: 9022563--9022791 Score: 298
Period size: 85 Copynumber: 2.7 Consensus size: 85
9022553 TTTCCAGCAT
* * * *
9022563 GACCAAGGGCCTAGGTTACCGATGGTGTCCGAGGCTCCCGTATATCCAAGCACCATGGTACCGAT
1 GACCAAGGGCCTAGGTTACCGATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGTACCGAT
* * *
9022628 AG-TGCCCGAAGCTCCCGCAC
66 -GCTACCCAAAGCTCCCACAC
* * * * **
9022648 GACCAAGGGCCTAGGTTATCGATGGTGTTCAAGGCTCCTGCACATCCAAGCACCAAGTTTTCGAT
1 GACCAAGGGCCTAGGTTACCGATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGTACCGAT
9022713 GCTACCCAAAGCTCCCACAC
66 GCTACCCAAAGCTCCCACAC
* * *
9022733 GACCAAGGGCCTATGTTGCTGATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGT
1 GACCAAGGGCCTAGGTTACCGATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGT
9022792 GCTGATGGTG
Statistics
Matches: 123, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
84 1 0.01
85 122 0.99
ACGTcount: A:0.24, C:0.32, G:0.25, T:0.19
Consensus pattern (85 bp):
GACCAAGGGCCTAGGTTACCGATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGTACCGAT
GCTACCCAAAGCTCCCACAC
Found at i:9022801 original size:42 final size:42
Alignment explanation
Indices: 9022583--9022801 Score: 122
Period size: 42 Copynumber: 5.2 Consensus size: 42
9022573 CTAGGTTACC
* * * * * *
9022583 GATGGTGTCCGAGGCTCCCGTATATCCAAGCACCATGGTACC
1 GATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGTGCT
* * ** * **
9022625 GATAGTGCCCGAA-GCTCCCGCACGA-CCAAGGGCCTAGGTTAT
1 GATGGTGTCC-AAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCT
* * **
9022667 CGATGGTGTTCAAGGCTCCTGCACATCCAAGCACCAA-GTTTT
1 -GATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGTGCT
* ** * * ** * *
9022709 CGATGCTACCCAAAGCTCCCACACGA-CCAAGGGCCTATGTTGCT
1 -GATGGTGTCCAAGGCTCCCGCAC-ATCCAAGCACC-AAGGTGCT
9022753 GATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGTGCT
1 GATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGTGCT
9022795 GATGGTG
1 GATGGTG
9022802 CTCGAGGCTT
Statistics
Matches: 126, Mismatches: 42, Indels: 18
0.68 0.23 0.10
Matches are distributed among these distances:
42 71 0.56
43 53 0.42
44 2 0.02
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (42 bp):
GATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGTGCT
Found at i:9022823 original size:85 final size:84
Alignment explanation
Indices: 9022563--9022874 Score: 275
Period size: 85 Copynumber: 3.7 Consensus size: 84
9022553 TTTCCAGCAT
* * * * * *
9022563 GACCAAGGGCCTAGGTTACCGATGGTGTCCGAGGCTCCCGTATATCCAAGCACCATGGTACCGAT
1 GACCAAGGGCCTAGGTT-CTGATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGTACTGAT
*
9022628 AGTGCCCGAAGCTCCCGCAC
65 GGTGCCCGAAGCTCCCGCAC
* * * **
9022648 GACCAAGGGCCTAGGTTATCGATGGTGTTCAAGGCTCCTGCACATCCAAGCACCAA-GTTTTCGA
1 GACCAAGGGCCTAGGTTCT-GATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGTACT-GA
* * * *
9022712 TGCTACCCAAAGCTCCCACAC
64 TGGTGCCCGAAGCTCCCGCAC
* *
9022733 GACCAAGGGCCTATGTTGCTGATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGTGCTGAT
1 GACCAAGGGCCTAGGTT-CTGATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGTACTGAT
* * * * *
9022798 GGTGCTCGAGGCTTCTGTAC
65 GGTGCCCGAAGCTCCCGCAC
* **** * * * * *
9022818 CACCAATTTTCTAGGTTTTCAATGGTGTCCAAGGCTTCCACACATCAAAGCACCAAG
1 GACCAAGGGCCTAGGTTCT-GATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAG
9022875 TTTCAATGGT
Statistics
Matches: 180, Mismatches: 42, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
84 3 0.02
85 173 0.96
86 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.21
Consensus pattern (84 bp):
GACCAAGGGCCTAGGTTCTGATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGTACTGATG
GTGCCCGAAGCTCCCGCAC
Found at i:9022834 original size:170 final size:170
Alignment explanation
Indices: 9022563--9022877 Score: 389
Period size: 170 Copynumber: 1.9 Consensus size: 170
9022553 TTTCCAGCAT
* * * *
9022563 GACCAAGGGCCTAGGTTACCGATGGTGTCCGAGGCTCCCGTATATCCAAGCACCATGGTACCGAT
1 GACCAAGGGCCTAGGTTACCGATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGTACCGAT
* * * *
9022628 AGTGCCCGAAGCTCCCGCACGACCAAGGGCCTAGGTTATCGATGGTGTTCAAGGC-TCCTGCACA
66 AGTGCCCGAAGCTCCCGCACCACCAAGGGCCTAGGTTATCAATGGTGTCCAAGGCTTCC-ACACA
*
9022692 TCCAAGCACCAAGTTTTCGATGCTACCCAAAGCTCCCACAC
130 TCAAAGCACCAAGTTTTCGATGCTACCCAAAGCTCCCACAC
* * * * *
9022733 GACCAAGGGCCTATGTTGCTGATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGTGCTGAT
1 GACCAAGGGCCTAGGTTACCGATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGTACCGAT
* * * * * * **** *
9022798 GGTGCTCGAGGCTTCTGTACCACCAATTTTCTAGGTTTTCAATGGTGTCCAAGGCTTCCACACAT
66 AGTGCCCGAAGCTCCCGCACCACCAAGGGCCTAGGTTATCAATGGTGTCCAAGGCTTCCACACAT
9022863 CAAAGCACCAAGTTT
131 CAAAGCACCAAGTTT
9022878 CAATGGTGCC
Statistics
Matches: 119, Mismatches: 25, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
170 116 0.97
171 3 0.03
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (170 bp):
GACCAAGGGCCTAGGTTACCGATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGTACCGAT
AGTGCCCGAAGCTCCCGCACCACCAAGGGCCTAGGTTATCAATGGTGTCCAAGGCTTCCACACAT
CAAAGCACCAAGTTTTCGATGCTACCCAAAGCTCCCACAC
Found at i:9023550 original size:18 final size:19
Alignment explanation
Indices: 9023519--9023554 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
9023509 TCCACAATTA
9023519 ATCTGCCAACCTTTAAACG
1 ATCTGCCAACCTTTAAACG
9023538 ATCTGCC-ACCTTTAAAC
1 ATCTGCCAACCTTTAAAC
9023555 CTTCTTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.31, C:0.33, G:0.08, T:0.28
Consensus pattern (19 bp):
ATCTGCCAACCTTTAAACG
Found at i:9037699 original size:42 final size:43
Alignment explanation
Indices: 9037646--9037776 Score: 133
Period size: 43 Copynumber: 3.1 Consensus size: 43
9037636 GCACTGCTCC
*
9037646 AGGTTACCGATGGTGTCCGAGGCTCCCGTACATCTAAGCACCA
1 AGGTTACCGATGGTGTCCGAGGCTCCCGTACATCCAAGCACCA
* * * ** *
9037689 AGG-TACCGATGGTGCCCAAGGCT-CC-TGCATGACCAAGGGCCT
1 AGGTTACCGATGGTGTCCGAGGCTCCCGTACAT--CCAAGCACCA
* * *
9037731 AGGTTACCGATGGTGTCTGAGGCACCCGCACATCCAAGCACCA
1 AGGTTACCGATGGTGTCCGAGGCTCCCGTACATCCAAGCACCA
9037774 AGG
1 AGG
9037777 CGTCGATGCT
Statistics
Matches: 67, Mismatches: 16, Indels: 10
0.72 0.17 0.11
Matches are distributed among these distances:
40 4 0.06
41 2 0.03
42 27 0.40
43 29 0.43
44 2 0.03
45 3 0.04
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.18
Consensus pattern (43 bp):
AGGTTACCGATGGTGTCCGAGGCTCCCGTACATCCAAGCACCA
Found at i:9037768 original size:43 final size:42
Alignment explanation
Indices: 9037646--9037839 Score: 135
Period size: 42 Copynumber: 4.6 Consensus size: 42
9037636 GCACTGCTCC
* * *
9037646 AGGTTACCGATGGTGTCCGAGGCTCCCGTACATCTAAGCACCA
1 AGGTTACCGATGGTGTCTGAGGCTCCCGCACA-CCAAGCACCA
* ** * * ** *
9037689 AGG-TACCGATGGTGCCCAAGGCTCCTGCATGACCAAGGGCCT
1 AGGTTACCGATGGTGTCTGAGGCTCCCGCA-CACCAAGCACCA
*
9037731 AGGTTACCGATGGTGTCTGAGGCACCCGCACATCCAAGCACCA
1 AGGTTACCGATGGTGTCTGAGGCTCCCGCACA-CCAAGCACCA
* * * ** *
9037774 AGGCGT--CGATGCT-ACTCGAGGCTCCCGCACGACCAAGGGCCT
1 AGG-TTACCGATGGTGTCT-GAGGCTCCCGCAC-ACCAAGCACCA
*
9037816 AGGTTATCGATGGTGTCTGAGGCT
1 AGGTTACCGATGGTGTCTGAGGCT
9037840 TCTGCACATC
Statistics
Matches: 114, Mismatches: 28, Indels: 18
0.71 0.17 0.11
Matches are distributed among these distances:
41 3 0.03
42 60 0.53
43 48 0.42
44 3 0.03
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (42 bp):
AGGTTACCGATGGTGTCTGAGGCTCCCGCACACCAAGCACCA
Found at i:9037881 original size:85 final size:85
Alignment explanation
Indices: 9037646--9037882 Score: 296
Period size: 85 Copynumber: 2.8 Consensus size: 85
9037636 GCACTGCTCC
* * * *
9037646 AGGTTACCGATGGTGTCCGAGGCTCCCGTACAT-CTAAGCACCAAGGTACCGATGGTGCCCAAGG
1 AGGTTACCGATGGTGTCTGAGGCTCCCGCACATCCT-AGCACCAAGGTGCCGATGGTGCTCAAGG
* *
9037710 CTCCTGCATGACCAAGGGCCT
65 CTCCCGCACGACCAAGGGCCT
* * * * * * *
9037731 AGGTTACCGATGGTGTCTGAGGCACCCGCACATCCAAGCACCAAGGCGTCGATGCTACTCGAGGC
1 AGGTTACCGATGGTGTCTGAGGCTCCCGCACATCCTAGCACCAAGGTGCCGATGGTGCTCAAGGC
9037796 TCCCGCACGACCAAGGGCCT
66 TCCCGCACGACCAAGGGCCT
* * * **
9037816 AGGTTATCGATGGTGTCTGAGGCTTCTGCACATCCTAGCATTAAGGTGCCGATGGTGCTCAAGGC
1 AGGTTACCGATGGTGTCTGAGGCTCCCGCACATCCTAGCACCAAGGTGCCGATGGTGCTCAAGGC
9037881 TC
66 TC
9037883 TCACACCACT
Statistics
Matches: 126, Mismatches: 25, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
85 125 0.99
86 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.20
Consensus pattern (85 bp):
AGGTTACCGATGGTGTCTGAGGCTCCCGCACATCCTAGCACCAAGGTGCCGATGGTGCTCAAGGC
TCCCGCACGACCAAGGGCCT
Found at i:9040330 original size:41 final size:41
Alignment explanation
Indices: 9040271--9040356 Score: 154
Period size: 41 Copynumber: 2.1 Consensus size: 41
9040261 TGAATTACCT
* *
9040271 AAAAGTTTACAAGCAAACTAAAAGCATCCAAATAAGCATTC
1 AAAAGTTTACAAGAAAACTAAAAGCATCCAAATAAACATTC
9040312 AAAAGTTTACAAGAAAACTAAAAGCATCCAAATAAACATTC
1 AAAAGTTTACAAGAAAACTAAAAGCATCCAAATAAACATTC
9040353 AAAA
1 AAAA
9040357 AGAGCATTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.56, C:0.17, G:0.08, T:0.19
Consensus pattern (41 bp):
AAAAGTTTACAAGAAAACTAAAAGCATCCAAATAAACATTC
Found at i:9048132 original size:27 final size:27
Alignment explanation
Indices: 9048080--9048132 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
9048070 AAAGCAAAAG
9048080 AAAGGAGAAAAAAGAAACAAAAAGAAC
1 AAAGGAGAAAAAAGAAACAAAAAGAAC
* *
9048107 AAAGG-GAAAAAGGTAACAAAAGAGAA
1 AAAGGAGAAAAAAGAAACAAAA-AGAA
9048133 AGAAACATGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 14 0.61
27 9 0.39
ACGTcount: A:0.70, C:0.06, G:0.23, T:0.02
Consensus pattern (27 bp):
AAAGGAGAAAAAAGAAACAAAAAGAAC
Found at i:9055396 original size:47 final size:46
Alignment explanation
Indices: 9055199--9055454 Score: 177
Period size: 45 Copynumber: 5.6 Consensus size: 46
9055189 GAAGGAAACA
* * * * * *
9055199 AATAAGACCATAGTTGAAAGATACTATGG-CACTATA-TCGAAACTA
1 AATAAGACCATGGTTGAAAGACACTATGGACAATA-AGACGAAAATG
* * * * * *
9055244 AATAAGACTATAGTTGAGAGACACTATGG-C-ATCATACCGAAAACG
1 AATAAGACCATGGTTGAAAGACACTATGGACAATAAGA-CGAAAATG
* ** * *** *
9055289 AATAAGACCATAGTTGAAAGATGCTAT-GAC-ATCATGAATTAAACG
1 AATAAGACCATGGTTGAAAGACACTATGGACAAT-AAGACGAAAATG
* * *
9055334 AATAAGACAATGGTTGAAAGACACTATGGA-AATATGATGTAAAAATG
1 AATAAGACCATGGTTGAAAGACACTATGGACAATAAGACG--AAAATG
* * *
9055381 TATAAGACCATGGTTGAAAGACACTAT-GACATTAAGACGAGAATG
1 AATAAGACCATGGTTGAAAGACACTATGGACAATAAGACGAAAATG
9055426 AATAAGACCATGGTTGAAAGACACTATGG
1 AATAAGACCATGGTTGAAAGACACTATGG
9055455 CATCCTTCAA
Statistics
Matches: 167, Mismatches: 34, Indels: 19
0.76 0.15 0.09
Matches are distributed among these distances:
43 1 0.01
44 2 0.01
45 121 0.72
46 8 0.05
47 35 0.21
ACGTcount: A:0.44, C:0.13, G:0.20, T:0.23
Consensus pattern (46 bp):
AATAAGACCATGGTTGAAAGACACTATGGACAATAAGACGAAAATG
Found at i:9065858 original size:89 final size:89
Alignment explanation
Indices: 9065685--9065849 Score: 251
Period size: 89 Copynumber: 1.9 Consensus size: 89
9065675 TTCAGATATT
* * * * * *
9065685 GATATATTAGTTATTCTAGAGCTTTCAACTAGTCTTGTATAACCAAATATTGCAATAATATTGGT
1 GATATATTAGTCATTCTAGAGCTTTCAACTAGTCTTGTACAACCAAATATCGCAATAACACTAGT
9065750 TTGTTTCAATACCACAACAGGTAC
66 TTGTTTCAATACCACAACAGGTAC
*
9065774 GATATATTAGCTCA-TCTAGAGCTTTCAACTAGTTTTGTACAACCAAATATCGCAATAACACTAG
1 GATATATTAG-TCATTCTAGAGCTTTCAACTAGTCTTGTACAACCAAATATCGCAATAACACTAG
9065838 TTTGTTTCAATA
65 TTTGTTTCAATA
9065850 TTTCAACAGA
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
89 66 0.97
90 2 0.03
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.36
Consensus pattern (89 bp):
GATATATTAGTCATTCTAGAGCTTTCAACTAGTCTTGTACAACCAAATATCGCAATAACACTAGT
TTGTTTCAATACCACAACAGGTAC
Found at i:9069024 original size:44 final size:45
Alignment explanation
Indices: 9068952--9069045 Score: 154
Period size: 44 Copynumber: 2.1 Consensus size: 45
9068942 CTTGTATCTT
**
9068952 CGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCTTTTTC
1 CGATCTACTTCACCACCAATACAGGAAGACAAGATCTGCTTTTTC
*
9068997 CGATCTACTTCA-CACCAATACATGAAGACAAGATCTGCTTTTTC
1 CGATCTACTTCACCACCAATACAGGAAGACAAGATCTGCTTTTTC
9069041 CGATC
1 CGATC
9069046 GATTCCACTG
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
44 34 0.74
45 12 0.26
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (45 bp):
CGATCTACTTCACCACCAATACAGGAAGACAAGATCTGCTTTTTC
Found at i:9069382 original size:89 final size:89
Alignment explanation
Indices: 9069278--9069484 Score: 351
Period size: 89 Copynumber: 2.3 Consensus size: 89
9069268 GTTTTACACT
* *
9069278 AGTACATGAAAACAAGATCTGTTTTCTTTGATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCT
1 AGTACATGAAGACAAGATCTGTTTTCTTTAATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCT
9069343 GGTATCTCTGATATACTTCACGCC
66 GGTATCTCTGATATACTTCACGCC
*
9069367 AGTACCTGAAGACAAGATCTGTTTTCTTTAATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCT
1 AGTACATGAAGACAAGATCTGTTTTCTTTAATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCT
*
9069432 GGTATCTCTGATCTACTTCACGCC
66 GGTATCTCTGATATACTTCACGCC
* * *
9069456 AATACATGAAGACAAGATATGTTATCTTT
1 AGTACATGAAGACAAGATCTGTTTTCTTT
9069485 CAACCTACTT
Statistics
Matches: 110, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
89 110 1.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (89 bp):
AGTACATGAAGACAAGATCTGTTTTCTTTAATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCT
GGTATCTCTGATATACTTCACGCC
Found at i:9069383 original size:44 final size:44
Alignment explanation
Indices: 9069218--9069482 Score: 163
Period size: 44 Copynumber: 6.0 Consensus size: 44
9069208 ATGTTGTATT
* * ** *
9069218 TGATCTTCTTCACGCC-GATACATGAAGACAAGACCTACTATCTT
1 TGATCTACTTCACGCCAG-TACATGAAGACAAGATCTGGTATCTC
** * * * * * * *
9069262 TGATCTGTTTTACACTAGTACATGAAAACAAGATCTGTTTTCTT
1 TGATCTACTTCACGCCAGTACATGAAGACAAGATCTGGTATCTC
* * * *** *
9069306 TGATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCTGGTATCTC
1 TGATCTACTTC-ACGCCAGTACATGAAGACAAGATCTGGTATCTC
* * * * *
9069351 TGATATACTTCACGCCAGTACCTGAAGACAAGATCTGTTTTCTT
1 TGATCTACTTCACGCCAGTACATGAAGACAAGATCTGGTATCTC
* * * * *** *
9069395 TAATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCTGGTATCTC
1 TGATCTACTTC-ACGCCAGTACATGAAGACAAGATCTGGTATCTC
* * *
9069440 TGATCTACTTCACGCCAATACATGAAGACAAGATATGTTATCT
1 TGATCTACTTCACGCCAGTACATGAAGACAAGATCTGGTATCT
9069483 TTCAACCTAC
Statistics
Matches: 162, Mismatches: 56, Indels: 6
0.72 0.25 0.03
Matches are distributed among these distances:
44 96 0.59
45 66 0.41
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (44 bp):
TGATCTACTTCACGCCAGTACATGAAGACAAGATCTGGTATCTC
Found at i:9069428 original size:45 final size:45
Alignment explanation
Indices: 9069290--9069450 Score: 171
Period size: 45 Copynumber: 3.6 Consensus size: 45
9069280 TACATGAAAA
9069290 CAAGATCTGTTTTCTTTGATCTGCTTCGCCACCAGTATGGGAAGG
1 CAAGATCTGTTTTCTTTGATCTGCTTCGCCACCAGTATGGGAAGG
* * * * * * * *** *
9069335 CAAGATCTGGTATCTCTGATATACTTC-ACGCCAGTACCTGAAGA
1 CAAGATCTGTTTTCTTTGATCTGCTTCGCCACCAGTATGGGAAGG
*
9069379 CAAGATCTGTTTTCTTTAATCTGCTTCGCCACCAGTATGGGAAGG
1 CAAGATCTGTTTTCTTTGATCTGCTTCGCCACCAGTATGGGAAGG
* * * *
9069424 CAAGATCTGGTATCTCTGATCTACTTC
1 CAAGATCTGTTTTCTTTGATCTGCTTC
9069451 ACGCCAATAC
Statistics
Matches: 87, Mismatches: 28, Indels: 2
0.74 0.24 0.02
Matches are distributed among these distances:
44 32 0.37
45 55 0.63
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (45 bp):
CAAGATCTGTTTTCTTTGATCTGCTTCGCCACCAGTATGGGAAGG
Found at i:9081403 original size:3 final size:3
Alignment explanation
Indices: 9081395--9081429 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
9081385 ATATGTATAG
*
9081395 TAA TAA TAA TAA TAA TAA TAA TAA TAA TGA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
9081430 TTTAAAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:9087125 original size:21 final size:24
Alignment explanation
Indices: 9087092--9087135 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 24
9087082 AAAAAATTGC
9087092 TAAAACAACTTCT-AAA-AAAAAT
1 TAAAACAACTTCTCAAAGAAAAAT
*
9087114 TAAAAGAA-TTCTCAAAGAAAAA
1 TAAAACAACTTCTCAAAGAAAAA
9087136 AATTCAACGA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 4 0.21
22 10 0.53
23 5 0.26
ACGTcount: A:0.64, C:0.11, G:0.05, T:0.20
Consensus pattern (24 bp):
TAAAACAACTTCTCAAAGAAAAAT
Found at i:9087706 original size:14 final size:15
Alignment explanation
Indices: 9087687--9087719 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
9087677 CATAATTTCG
9087687 TTAATTAA-ATAAAT
1 TTAATTAAGATAAAT
*
9087701 TTAATTAAGATTAAT
1 TTAATTAAGATAAAT
9087716 TTAA
1 TTAA
9087720 GTATATATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (15 bp):
TTAATTAAGATAAAT
Found at i:9090236 original size:21 final size:20
Alignment explanation
Indices: 9090199--9090240 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
9090189 TATCATTTGT
*
9090199 ACATTTGAACACAGCATCAAA
1 ACATTTCAACACAGCAT-AAA
9090220 ACATTTCAA-ACATGCATAAA
1 ACATTTCAACACA-GCATAAA
9090240 A
1 A
9090241 TGACTAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.50, C:0.21, G:0.07, T:0.21
Consensus pattern (20 bp):
ACATTTCAACACAGCATAAA
Found at i:9091517 original size:36 final size:35
Alignment explanation
Indices: 9091477--9091552 Score: 107
Period size: 35 Copynumber: 2.1 Consensus size: 35
9091467 AATCCCTCTA
*
9091477 AAACACACCAAATGCTCACAAGAGCTAGTCTAACCG
1 AAACACACC-AATGCTCACAAGAGCTAGTCCAACCG
** *
9091513 AAACATGCCAATGCTCATAAGAGCTAGTCCAACCG
1 AAACACACCAATGCTCACAAGAGCTAGTCCAACCG
9091548 AAACA
1 AAACA
9091553 TGCCAAACAA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
35 29 0.81
36 7 0.19
ACGTcount: A:0.42, C:0.29, G:0.14, T:0.14
Consensus pattern (35 bp):
AAACACACCAATGCTCACAAGAGCTAGTCCAACCG
Found at i:9091526 original size:35 final size:35
Alignment explanation
Indices: 9091487--9091558 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 35
9091477 AAACACACCA
*
9091487 AATGCTCACAAGAGCTAGTCTAACCGAAACATGCC
1 AATGCTCACAAGAGCTAGTCCAACCGAAACATGCC
*
9091522 AATGCTCATAAGAGCTAGTCCAACCGAAACATGCC
1 AATGCTCACAAGAGCTAGTCCAACCGAAACATGCC
9091557 AA
1 AA
9091559 ACAAAGAGTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.39, C:0.28, G:0.17, T:0.17
Consensus pattern (35 bp):
AATGCTCACAAGAGCTAGTCCAACCGAAACATGCC
Found at i:9099769 original size:15 final size:14
Alignment explanation
Indices: 9099723--9099775 Score: 61
Period size: 15 Copynumber: 3.6 Consensus size: 14
9099713 ACTTTTGATT
9099723 AAACTTAATTAATC
1 AAACTTAATTAATC
* *
9099737 AAAATTAATTAATT
1 AAACTTAATTAATC
*
9099751 AAACTTTAATTAACC
1 AAAC-TTAATTAATC
9099766 AAACCTTAAT
1 AAA-CTTAAT
9099776 CTTAATTAGT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
14 15 0.47
15 16 0.50
16 1 0.03
ACGTcount: A:0.51, C:0.13, G:0.00, T:0.36
Consensus pattern (14 bp):
AAACTTAATTAATC
Found at i:9101668 original size:5 final size:6
Alignment explanation
Indices: 9101651--9101707 Score: 60
Period size: 6 Copynumber: 9.3 Consensus size: 6
9101641 CTTCTCTCTC
* * * * *
9101651 TATTTT TATTTT TATTTT TATGTA CATATT TATTCT TATTTTT TATTTT
1 TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TA-TTTT TATTTT
9101700 TATTTT TA
1 TATTTT TA
9101708 CCTTTTTTTC
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
6 36 0.88
7 5 0.12
ACGTcount: A:0.21, C:0.04, G:0.02, T:0.74
Consensus pattern (6 bp):
TATTTT
Found at i:9102566 original size:30 final size:28
Alignment explanation
Indices: 9102513--9102572 Score: 75
Period size: 30 Copynumber: 2.1 Consensus size: 28
9102503 TTAATTTCAA
* *
9102513 ATTTTGTTGTATATATGTACATACATAC
1 ATTTTGTTATATATATATACATACATAC
*
9102541 ATTTTGTTATATAAATATATACATACGTAC
1 ATTTTGTTATAT--ATATATACATACATAC
9102571 AT
1 AT
9102573 ATTTTTAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 11 0.41
30 16 0.59
ACGTcount: A:0.37, C:0.10, G:0.08, T:0.45
Consensus pattern (28 bp):
ATTTTGTTATATATATATACATACATAC
Found at i:9102598 original size:37 final size:38
Alignment explanation
Indices: 9102550--9102635 Score: 104
Period size: 37 Copynumber: 2.3 Consensus size: 38
9102540 CATTTTGTTA
* *
9102550 TATAAATATATACATACGTACATATT-TTTAATTTA-TT
1 TATATATATATACATACGTACATATTATTT-ATATACTT
* **
9102587 TATATATATATACATACTTATGTATTATTTATATACTT
1 TATATATATATACATACGTACATATTATTTATATACTT
9102625 TATATATATAT
1 TATATATATAT
9102636 GTGTGTGTTC
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
37 26 0.62
38 16 0.38
ACGTcount: A:0.40, C:0.07, G:0.02, T:0.51
Consensus pattern (38 bp):
TATATATATATACATACGTACATATTATTTATATACTT
Found at i:9106711 original size:12 final size:12
Alignment explanation
Indices: 9106685--9106717 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
9106675 TACTTCACTT
*
9106685 GAAAA-AAAAAC
1 GAAAAGAAAAAA
9106696 GAAAAGAAAAAA
1 GAAAAGAAAAAA
9106708 GAAAAGAAAA
1 GAAAAGAAAA
9106718 GAATAACAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 5 0.25
12 15 0.75
ACGTcount: A:0.82, C:0.03, G:0.15, T:0.00
Consensus pattern (12 bp):
GAAAAGAAAAAA
Found at i:9106716 original size:17 final size:16
Alignment explanation
Indices: 9106685--9106734 Score: 64
Period size: 17 Copynumber: 3.0 Consensus size: 16
9106675 TACTTCACTT
*
9106685 GAAAAAAAAACGAAAA
1 GAAAAAAAAAAGAAAA
9106701 GAAAAAAGAAAAGAAAA
1 GAAAAAA-AAAAGAAAA
*
9106718 GAATAACAAAAAGAAAA
1 GAA-AAAAAAAAGAAAA
9106735 AGGAGAGGCC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
16 7 0.23
17 20 0.67
18 3 0.10
ACGTcount: A:0.80, C:0.04, G:0.14, T:0.02
Consensus pattern (16 bp):
GAAAAAAAAAAGAAAA
Found at i:9107681 original size:50 final size:50
Alignment explanation
Indices: 9107609--9108161 Score: 276
Period size: 50 Copynumber: 11.1 Consensus size: 50
9107599 ACAGTATAGT
* * * *
9107609 AGATTAAAGCTATAACGGCGAATCTTGCTTCCCTGATATTGCAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTAAAA
** * * * * * * ** **
9107659 AGATTGAAGCCGCAACGACGAATCTTACTTTCTTGGCGA-TACAGTGGATC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGAC-ATTGCAATTAAAA
* ** *
9107709 AGATTGAAGCTACAACAGCGAATCTTGTTTCCC-GACATTGCAATTAAAG
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTAAAA
* ** * * * * ** **
9107758 AGATTGAAGCCACAACGATGAATCTCACTTCCCTTG-CAGTACAGTCCAGC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCC-TGACATTGCAATTAAAA
* * * *
9107808 AGATT-ATAGCTACGACGGTGAATCTTGCTTCCCTGATATTGCAATTAAAA
1 AGATTGA-AGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTAAAA
** * * * * * * ** **
9107858 AGATTGAAGCCGCAACGGCTAATCTTATTTTCTTGGCGA-TGCAGTGGATC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGAC-ATTGCAATTAAAA
* * * *
9107908 AGATTGAAGCAACAACAGCGAATCTTA-TT-CCTCGGCATTGCAATTAAAG
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCT-GACATTGCAATTAAAA
* * * * ** * * * **
9107957 AGATTGAAGCCACAACGGTGAATCTCACTTCTCTGGGAGTAC-AGTAGAGC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTA-AAA
* * * * *
9108007 AGATTAAAGCTACGACGGCGAATCTTGCTTCCCTGATATTGCAATTTAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTAAAA
* * * * * * * *
9108057 AGATTAAAGCTACGACGACAAATCTTGCTTCCTTGATATTGCAATTTAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTAAAA
* * * * *
9108107 AGATTAAAGCTACGACGGTGAATCTTACTTCCCTGACAGTGCAATTTAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTAAAA
9108157 AGATT
1 AGATT
9108162 CAAGATGGCG
Statistics
Matches: 369, Mismatches: 120, Indels: 28
0.71 0.23 0.05
Matches are distributed among these distances:
48 4 0.01
49 73 0.20
50 284 0.77
51 8 0.02
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.28
Consensus pattern (50 bp):
AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTAAAA
Found at i:9107781 original size:99 final size:101
Alignment explanation
Indices: 9107609--9108066 Score: 504
Period size: 99 Copynumber: 4.6 Consensus size: 101
9107599 ACAGTATAGT
* *
9107609 AGATTAAAGCTATAACGGCGAATCTTGCTTCCCTGATATTGCAATTAAAAAGATTGAAGCCGCAA
1 AGATTAAAGCTACAACGGCGAATCTTGCTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAA
* * *
9107674 CGACGAATCTTACTTTCTTGGCGA-TACAGTGGATC
66 CGATGAATCTCACTTTCTTGGCGAGTACAGTGGAGC
* * * * *
9107709 AGATTGAAGCTACAACAGCGAATCTTGTTTCCC-GACATTGCAATTAAAGAGATTGAAGCCACAA
1 AGATTAAAGCTACAACGGCGAATCTTGCTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAA
* **
9107773 CGATGAATCTCACTTCCCTT-GC-AGTACAGTCCAGC
66 CGATGAATCTCACTT-TCTTGGCGAGTACAGTGGAGC
* * * *
9107808 AGATTATAGCTACGACGGTGAATCTTGCTTCCCTGATATTGCAATTAAAAAGATTGAAGCCGCAA
1 AGATTAAAGCTACAACGGCGAATCTTGCTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAA
* * * * *
9107873 CGGCT-AATCTTATTTTCTTGGCGA-TGCAGTGGATC
66 C-GATGAATCTCACTTTCTTGGCGAGTACAGTGGAGC
* * * * ** *
9107908 AGATTGAAGCAACAACAGCGAATCTT-ATT-CCTCGGCATTGCAATTAAAGAGATTGAAGCCACA
1 AGATTAAAGCTACAACGGCGAATCTTGCTTCCCT-GATATTGCAATTAAAAAGATTGAAGCCACA
* *
9107971 ACGGTGAATCTCAC-TTCTCTGG-GAGTACAGTAGAGC
65 ACGATGAATCTCACTTTCT-TGGCGAGTACAGTGGAGC
* * *
9108007 AGATTAAAGCTACGACGGCGAATCTTGCTTCCCTGATATTGCAATTTAAAAGATTAAAGC
1 AGATTAAAGCTACAACGGCGAATCTTGCTTCCCTGATATTGCAATTAAAAAGATTGAAGC
9108067 TACGACGACA
Statistics
Matches: 289, Mismatches: 57, Indels: 24
0.78 0.15 0.06
Matches are distributed among these distances:
98 12 0.04
99 150 0.52
100 121 0.42
101 6 0.02
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (101 bp):
AGATTAAAGCTACAACGGCGAATCTTGCTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAA
CGATGAATCTCACTTTCTTGGCGAGTACAGTGGAGC
Found at i:9107925 original size:199 final size:199
Alignment explanation
Indices: 9107585--9108066 Score: 759
Period size: 199 Copynumber: 2.4 Consensus size: 199
9107575 AATGAAGTTA
* * **
9107585 ACTTCCCTTGCAGTACAGTATAGTAGATTAAAGCTATAACGGCGAATCTTGCTTCCCTGATATTG
1 ACTTCCCTTGCAGTACAGTACAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCCCTGATATTG
9107650 CAATTAAAAAGATTGAAGCCGCAACGACGAATCTTACTTTCTTGGCGATACAGTGGATCAGATTG
66 CAATTAAAAAGATTGAAGCCGCAACGACGAATCTTACTTTCTTGGCGATACAGTGGATCAGATTG
* *
9107715 AAGCTACAACAGCGAATCTTGTTTCC-CGACATTGCAATTAAAGAGATTGAAGCCACAACGATGA
131 AAGCAACAACAGCGAATCTT-ATTCCTCGACATTGCAATTAAAGAGATTGAAGCCACAACGATGA
9107779 ATCTC
195 ATCTC
* * *
9107784 ACTTCCCTTGCAGTACAGTCCAGCAGATTATAGCTACGACGGTGAATCTTGCTTCCCTGATATTG
1 ACTTCCCTTGCAGTACAGTACAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCCCTGATATTG
* * * *
9107849 CAATTAAAAAGATTGAAGCCGCAACGGCTAATCTTATTTTCTTGGCGATGCAGTGGATCAGATTG
66 CAATTAAAAAGATTGAAGCCGCAACGACGAATCTTACTTTCTTGGCGATACAGTGGATCAGATTG
* *
9107914 AAGCAACAACAGCGAATCTTATTCCTCGGCATTGCAATTAAAGAGATTGAAGCCACAACGGTGAA
131 AAGCAACAACAGCGAATCTTATTCCTCGACATTGCAATTAAAGAGATTGAAGCCACAACGATGAA
9107979 TCTC
196 TCTC
* * * *
9107983 ACTTCTCTGGGAGTACAGTAGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCCCTGATATTG
1 ACTTCCCTTGCAGTACAGTACAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCCCTGATATTG
* *
9108048 CAATTTAAAAGATTAAAGC
66 CAATTAAAAAGATTGAAGC
9108067 TACGACGACA
Statistics
Matches: 258, Mismatches: 24, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
198 4 0.02
199 254 0.98
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (199 bp):
ACTTCCCTTGCAGTACAGTACAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCCCTGATATTG
CAATTAAAAAGATTGAAGCCGCAACGACGAATCTTACTTTCTTGGCGATACAGTGGATCAGATTG
AAGCAACAACAGCGAATCTTATTCCTCGACATTGCAATTAAAGAGATTGAAGCCACAACGATGAA
TCTC
Found at i:9108081 original size:100 final size:101
Alignment explanation
Indices: 9107596--9108161 Score: 490
Period size: 100 Copynumber: 5.7 Consensus size: 101
9107586 CTTCCCTTGC
* * * * *
9107596 AGTACAGTATAGTAGATTAAAGCTATAACGGCGAATCTTGCTTCCCTGATATTGCAATTAAAAAG
1 AGTACAGTAGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCTGACATTGCAATTTAAAAG
*
9107661 ATTGAAGCCGCAACGACGAATCTTACTT-TCTTGGCG
66 ATTGAAGCCACAACGACGAATCTTACTTCTCTTGG-G
* * * * *
9107697 A-TACAGTGGATCAGATTGAAGCTACAACAGCGAATCTTGTTTCCC-GACATTGCAA-TTAAAGA
1 AGTACAGTAGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCTGACATTGCAATTTAAA-A
* * * *
9107759 GATTGAAGCCACAACGATGAATCTCACTTCCCTT-GC
65 GATTGAAGCCACAACGACGAATCTTACTTCTCTTGGG
** * * * * *
9107795 AGTACAGTCCAGCAGATTATAGCTACGACGGTGAATCTTGCTTCCCTGATATTGCAATTAAAAAG
1 AGTACAGTAGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCTGACATTGCAATTTAAAAG
* * * *
9107860 ATTGAAGCCGCAACGGCTAATCTTA-TTTTCTTGGCG
66 ATTGAAGCCACAACGACGAATCTTACTTCTCTTGG-G
* * * * * * * *
9107896 A-TGCAGTGGATCAGATTGAAGCAACAACAGCGAATCTT-ATT-CCTCGGCATTGCAA-TTAAAG
1 AGTACAGTAGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCT-GACATTGCAATTTAAA-
** *
9107957 AGATTGAAGCCACAACGGTGAATCTCACTTCTC-TGGG
64 AGATTGAAGCCACAACGACGAATCTTACTTCTCTTGGG
* *
9107994 AGTACAGTAGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCCCTGATATTGCAATTTAAAAG
1 AGTACAGTAGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCTGACATTGCAATTTAAAAG
* * * * * **
9108059 ATTAAAGCTACGACGACAAATCTTGCTTC-CTTGAT
66 ATTGAAGCCACAACGACGAATCTTACTTCTCTTGGG
* * * ** ** * * * *
9108094 ATTGCAATTTAAAAGATTAAAGCTACGACGGTGAATCTTACTTCCCTGACAGTGCAATTTAAAAG
1 AGTACAGTAGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCTGACATTGCAATTTAAAAG
9108159 ATT
66 ATT
9108162 CAAGATGGCG
Statistics
Matches: 366, Mismatches: 84, Indels: 31
0.76 0.17 0.06
Matches are distributed among these distances:
98 14 0.04
99 144 0.39
100 194 0.53
101 14 0.04
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (101 bp):
AGTACAGTAGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCTGACATTGCAATTTAAAAG
ATTGAAGCCACAACGACGAATCTTACTTCTCTTGGG
Found at i:9108269 original size:44 final size:44
Alignment explanation
Indices: 9108221--9109078 Score: 230
Period size: 44 Copynumber: 19.5 Consensus size: 44
9108211 CCAGTAGTTC
* *
9108221 TATCTCCCTGGGCAACAGTTGAATAGATTGAAGATTACAGATCT
1 TATCTCCCTGAGCAACAGTGGAATAGATTGAAGATTACAGATCT
* * ** ** * ** *
9108265 TATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCAGATTT
1 TATCTCCCTGAGCAACAGTGGAATAGATTGAAGATTACAGATCT
* * * ** ** *
9108309 TACCTCCCTGAG-ATTACAGTGGAGTACATTGAAGCCTGTAGTTC-
1 TATCTCCCTGAGCA--ACAGTGGAATAGATTGAAGATTACAGATCT
* * *
9108353 TATCTCCCTGGGCAGCAGTGGAATAGATTGAATATTACAGATCT
1 TATCTCCCTGAGCAACAGTGGAATAGATTGAAGATTACAGATCT
* ** ** * * *
9108397 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGACAGATTT
1 TATCTCCCTGAGCAACAGTGGAATAGATTGAAGATTACAGATCT
* ** * * * *
9108441 TACCTCCCTGAG-ATTATGGTGGAGTACATTGAAGCCAGT--AGTTC-
1 TATCTCCCTGAGCA--ACAGTGGAATAGATTGAAG--ATTACAGATCT
* * * *
9108485 TATCTCCCTGGGTAGCAGAGGAATAGATTGAAGATTACAGATCT
1 TATCTCCCTGAGCAACAGTGGAATAGATTGAAGATTACAGATCT
* ** ** * * ** * *
9108529 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGCGGATTT
1 TATCTCCCTGAGCAACAGTGGAATAGATTGAAGATTACAGATCT
* ** * * * *
9108573 TACCTCCCTGAG-ATTATGGTGGAGTACATTGAAGCCAGT--AGTTC-
1 TATCTCCCTGAGCA--ACAGTGGAATAGATTGAAG--ATTACAGATCT
* *
9108617 TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
1 TATCTCCCTGAGCAACAGTGGAATAGATTGAAGATTACAGATCT
* ** ** * ** * *
9108661 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTT
1 TATCTCCCTGAGCAACAGTGGAATAGATTGAAGATTACAGATCT
* * * * *
9108705 TA-CTTCCCTGAG-ATTACGGTGGAGTACATTGAAGCCAGT--AGTTC-
1 TATC-TCCCTGAGCA--ACAGTGGAATAGATTGAAG--ATTACAGATCT
* * * *
9108749 TATCTCCCTGGGCAGCAGAGGAATAGATTGAAGATTATAGATCT
1 TATCTCCCTGAGCAACAGTGGAATAGATTGAAGATTACAGATCT
* ** ** * ** *
9108793 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGC-GAATTT
1 TATCTCCCTGAGCAACAGTGGAATAGATTGAAGATTACAG-ATCT
* * ** * * * *
9108837 TACCTCCTTGAG-ATTATGGTGGAGTACATTGAAGCCAGT--AGTTC-
1 TATCTCCCTGAGCA--ACAGTGGAATAGATTGAAG--ATTACAGATCT
* * * *
9108881 TATCTCCCTGGGTAGCAGAGGAATAGATTGAAGATTACAGATCT
1 TATCTCCCTGAGCAACAGTGGAATAGATTGAAGATTACAGATCT
* ** * * * ** * *
9108925 TATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGATGGCGGATTT
1 TATCTCCCTGAGCAACAGTGGAATAGATTGAAGATTACAGATCT
* * * * * *** *
9108969 TACCTTCCTGAG-ATTACAGTGGAGTACATTGAAGCTGGTAGTTC-
1 TATCTCCCTGAGCA--ACAGTGGAATAGATTGAAGATTACAGATCT
* * *
9109013 TATCTCCCTGGGTAGCAGTGGAATAGATTGAAGATTACAGATCT
1 TATCTCCCTGAGCAACAGTGGAATAGATTGAAGATTACAGATCT
* *
9109057 TATCTCCCTAAGCAATAGTGGA
1 TATCTCCCTGAGCAACAGTGGA
9109079 GCAGGTCGAA
Statistics
Matches: 564, Mismatches: 206, Indels: 88
0.66 0.24 0.10
Matches are distributed among these distances:
41 8 0.01
43 119 0.21
44 326 0.58
45 106 0.19
46 1 0.00
47 4 0.01
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (44 bp):
TATCTCCCTGAGCAACAGTGGAATAGATTGAAGATTACAGATCT
Found at i:9108400 original size:132 final size:132
Alignment explanation
Indices: 9108163--9109216 Score: 1671
Period size: 132 Copynumber: 8.0 Consensus size: 132
9108153 TAAAAGATTC
* *
9108163 AAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAGTTCTATCTCC
1 AAGATGGCGGATTTTACCTCCCTGAGATTACAGTGGAGTACATTGAAGCCAGTAGTTCTATCTCC
* * *
9108228 CTGGGCAACAGTTGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGAT
66 CTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
9108293 CG
131 CG
* *
9108295 AAGATGGCAGATTTTACCTCCCTGAGATTACAGTGGAGTACATTGAAGCCTGTAGTTCTATCTCC
1 AAGATGGCGGATTTTACCTCCCTGAGATTACAGTGGAGTACATTGAAGCCAGTAGTTCTATCTCC
*
9108360 CTGGGCAGCAGTGGAATAGATTGAATATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
66 CTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
9108425 CG
131 CG
* * **
9108427 AAGATGACAGATTTTACCTCCCTGAGATTATGGTGGAGTACATTGAAGCCAGTAGTTCTATCTCC
1 AAGATGGCGGATTTTACCTCCCTGAGATTACAGTGGAGTACATTGAAGCCAGTAGTTCTATCTCC
* * *
9108492 CTGGGTAGCAGAGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGT
66 CTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
9108557 CG
131 CG
**
9108559 AAGATGGCGGATTTTACCTCCCTGAGATTATGGTGGAGTACATTGAAGCCAGTAGTTCTATCTCC
1 AAGATGGCGGATTTTACCTCCCTGAGATTACAGTGGAGTACATTGAAGCCAGTAGTTCTATCTCC
9108624 CTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
66 CTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
9108689 CG
131 CG
* *
9108691 AAGATGGCGGATTTTACTTCCCTGAGATTACGGTGGAGTACATTGAAGCCAGTAGTTCTATCTCC
1 AAGATGGCGGATTTTACCTCCCTGAGATTACAGTGGAGTACATTGAAGCCAGTAGTTCTATCTCC
* *
9108756 CTGGGCAGCAGAGGAATAGATTGAAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
66 CTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
9108821 CG
131 CG
* * **
9108823 AAGATGGCGAATTTTACCTCCTTGAGATTATGGTGGAGTACATTGAAGCCAGTAGTTCTATCTCC
1 AAGATGGCGGATTTTACCTCCCTGAGATTACAGTGGAGTACATTGAAGCCAGTAGTTCTATCTCC
* * * *
9108888 CTGGGTAGCAGAGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGGT
66 CTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
9108953 CG
131 CG
* **
9108955 AAGATGGCGGATTTTACCTTCCTGAGATTACAGTGGAGTACATTGAAGCTGGTAGTTCTATCTCC
1 AAGATGGCGGATTTTACCTCCCTGAGATTACAGTGGAGTACATTGAAGCCAGTAGTTCTATCTCC
* * *
9109020 CTGGGTAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGGT
66 CTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
9109085 CG
131 CG
* * *
9109087 AAGATGGCGGATTTTACCTCCCTGAAATTACAGTGGAGTACATTGAAG-CTGATAGTTTTATCTC
1 AAGATGGCGGATTTTACCTCCCTGAGATTACAGTGGAGTACATTGAAGCCAG-TAGTTCTATCTC
* * ** * * *
9109151 CCTCGGCAGCAATGGAATAGATTG-AGAACCACTGATCTTATCTCCCTAAGCAGTAGTTGAGTAG
65 CCTGGGCAGCAGTGGAATAGATTGAAG-ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAG
9109215 AT
129 AT
9109217 TGCCTCAAGT
Statistics
Matches: 862, Mismatches: 58, Indels: 4
0.93 0.06 0.00
Matches are distributed among these distances:
131 3 0.00
132 859 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (132 bp):
AAGATGGCGGATTTTACCTCCCTGAGATTACAGTGGAGTACATTGAAGCCAGTAGTTCTATCTCC
CTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
CG
Found at i:9109287 original size:42 final size:42
Alignment explanation
Indices: 9109175--9109389 Score: 186
Period size: 42 Copynumber: 5.1 Consensus size: 42
9109165 GAATAGATTG
* * * *
9109175 AGAACCACTGATCTTATCTCCCTAAGCAGTAGTTGAGTAGAT
1 AGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAC
* * *
9109217 TG--CCTCA-AGTTTTATCTCCCTAAGCAGTAGTGGAGCAGAC
1 AGAACCACAGA-TCTTATCTCCCTAAGCAGTAGTGGAGCAGAC
* * *
9109257 AGAACCACAGGTCTTATCTCCTTAATCAGTAGTGGAGCAGAC
1 AGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAC
** * * ** * * *
9109299 AGAAGAAATCA-ATCCTATCTCTCTGAAGTTGCAGTGGAGCGGATT
1 AGAA-CCA-CAGATCTTATCTCCCT-AAGCAGTAGTGGAGCAGA-C
9109344 AGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAC
1 AGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAC
9109386 AGAA
1 AGAA
9109390 GAAATAAATC
Statistics
Matches: 130, Mismatches: 34, Indels: 18
0.71 0.19 0.10
Matches are distributed among these distances:
39 1 0.01
40 31 0.24
42 41 0.32
43 26 0.20
44 27 0.21
45 4 0.03
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (42 bp):
AGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAC
Found at i:9109359 original size:87 final size:88
Alignment explanation
Indices: 9109257--9109445 Score: 308
Period size: 87 Copynumber: 2.2 Consensus size: 88
9109247 TGGAGCAGAC
* * * *
9109257 AGAACCACAGGTCTTATCTCCTTAATCAGTAGTGGAGCAGACAGAAGAAATCAATCCTATCTCTC
1 AGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAATAAATCCTATCTCTC
*
9109322 TGAAGTTGCAGTGGAGCGGATT-
66 TGAAGTTACAGTGGAGCGGATTA
9109344 AGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAATAAATCCTATCTCTC
1 AGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAATAAATCCTATCTCTC
9109409 TGAAGTTACAGTGGAGCGGATTA
66 TGAAGTTACAGTGGAGCGGATTA
* *
9109432 AAAACCACAAATCT
1 AGAACCACAGATCT
9109446 CATCCCCATA
Statistics
Matches: 94, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
87 82 0.87
88 12 0.13
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (88 bp):
AGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAATAAATCCTATCTCTC
TGAAGTTACAGTGGAGCGGATTA
Found at i:9109362 original size:44 final size:44
Alignment explanation
Indices: 9109309--9109445 Score: 116
Period size: 43 Copynumber: 3.1 Consensus size: 44
9109299 AGAAGAAATC
*
9109309 AATCCTATCTCTCTGAAGTTGCAGTGGAGCGGATTAGAACCACA
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCGGATTAGAACCACA
* * ** * * * ** *
9109353 GATCTTATCTCCCT-AAGCAGTAGTGGAGCAGA-CAGAAGAAATA
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCGGATTAGAA-CCACA
* * *
9109396 AATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAAACCACA
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCGGATT-AGAACCACA
9109441 AATCT
1 AATCT
9109446 CATCCCCATA
Statistics
Matches: 64, Mismatches: 25, Indels: 7
0.67 0.26 0.07
Matches are distributed among these distances:
42 4 0.06
43 27 0.42
44 24 0.38
45 6 0.09
46 3 0.05
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.24
Consensus pattern (44 bp):
AATCTTATCTCTCTGAAGTTGCAGTGGAGCGGATTAGAACCACA
Found at i:9110254 original size:7 final size:6
Alignment explanation
Indices: 9110191--9110255 Score: 67
Period size: 6 Copynumber: 10.5 Consensus size: 6
9110181 CTTCTCTCTC
* ** * *
9110191 TTTATT TTTATT TTTATT TTTATG TACATA TTTATT CTTATTT TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTA-TT TTTATT
9110240 TTTATT TTTACTT TTT
1 TTTATT TTTA-TT TTT
9110256 TTTCTCCGTG
Statistics
Matches: 48, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
6 38 0.79
7 10 0.21
ACGTcount: A:0.18, C:0.05, G:0.02, T:0.75
Consensus pattern (6 bp):
TTTATT
Found at i:9111108 original size:30 final size:28
Alignment explanation
Indices: 9111055--9111114 Score: 75
Period size: 30 Copynumber: 2.1 Consensus size: 28
9111045 TTAATTTCAA
* *
9111055 ATTTTGTTGTATATATGTACATACATAC
1 ATTTTGTTATATATATATACATACATAC
*
9111083 ATTTTGTTATATAAATATATACATACGTAC
1 ATTTTGTTATAT--ATATATACATACATAC
9111113 AT
1 AT
9111115 ATTTTTAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 11 0.41
30 16 0.59
ACGTcount: A:0.37, C:0.10, G:0.08, T:0.45
Consensus pattern (28 bp):
ATTTTGTTATATATATATACATACATAC
Found at i:9111138 original size:35 final size:36
Alignment explanation
Indices: 9111097--9111174 Score: 97
Period size: 35 Copynumber: 2.2 Consensus size: 36
9111087 TGTTATATAA
*
9111097 ATATATACATACGTACATATT-TTTAATTTA-TTTAT
1 ATATATACATACGTACATATTATTT-ATATACTTTAT
* **
9111132 ATATATACATACTTATGTATTATTTATATACTTTAT
1 ATATATACATACGTACATATTATTTATATACTTTAT
9111168 ATATATA
1 ATATATA
9111175 TGTGTGTTCA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
35 22 0.59
36 15 0.41
ACGTcount: A:0.38, C:0.08, G:0.03, T:0.51
Consensus pattern (36 bp):
ATATATACATACGTACATATTATTTATATACTTTAT
Found at i:9116648 original size:66 final size:66
Alignment explanation
Indices: 9116577--9116712 Score: 263
Period size: 66 Copynumber: 2.1 Consensus size: 66
9116567 TTAAAAACAA
9116577 GTATGAACATAGAATAGAATTTTATATTTACGAATGTCCGGTGCGTTTGACTATTTCTTTTCGTT
1 GTATGAACATAGAATAGAATTTTATATTTACGAATGTCCGGTGCGTTTGACTATTTCTTTTCGTT
9116642 G
66 G
*
9116643 GTATGAACATAGAATAGAGTTTTATATTTACGAATGTCCGGTGCGTTTGACTATTTCTTTTCGTT
1 GTATGAACATAGAATAGAATTTTATATTTACGAATGTCCGGTGCGTTTGACTATTTCTTTTCGTT
9116708 G
66 G
9116709 GTAT
1 GTAT
9116713 AACGGTGCCT
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 69 1.00
ACGTcount: A:0.25, C:0.12, G:0.21, T:0.43
Consensus pattern (66 bp):
GTATGAACATAGAATAGAATTTTATATTTACGAATGTCCGGTGCGTTTGACTATTTCTTTTCGTT
G
Found at i:9117193 original size:12 final size:12
Alignment explanation
Indices: 9117176--9117209 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
9117166 CGTTAGTAAA
9117176 ATAAAACCAAAT
1 ATAAAACCAAAT
*
9117188 ATAAAAACAAAT
1 ATAAAACCAAAT
*
9117200 AAAAAACCAA
1 ATAAAACCAA
9117210 TAGCAGTCCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.74, C:0.15, G:0.00, T:0.12
Consensus pattern (12 bp):
ATAAAACCAAAT
Found at i:9135181 original size:51 final size:51
Alignment explanation
Indices: 9135098--9135204 Score: 144
Period size: 51 Copynumber: 2.1 Consensus size: 51
9135088 ATAGGACCGA
*
9135098 TGTCGTGACATCGGAGGCAATATTGTCATACTCAAGGTAGCTTCAAGGGTG
1 TGTCGTGACATCAGAGGCAATATTGTCATACTCAAGGTAGCTTCAAGGGTG
* * * * *
9135149 TGTCGTGACATTAGAGGCAATA-TGCTCGTACTCAATGTAGCTTTAGGGGTG
1 TGTCGTGACATCAGAGGCAATATTG-TCATACTCAAGGTAGCTTCAAGGGTG
9135200 TGTCG
1 TGTCG
9135205 CAACATCCCT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
50 2 0.04
51 47 0.96
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (51 bp):
TGTCGTGACATCAGAGGCAATATTGTCATACTCAAGGTAGCTTCAAGGGTG
Found at i:9137413 original size:20 final size:20
Alignment explanation
Indices: 9137374--9137415 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
9137364 TAAAAGTCCT
*
9137374 AAAAATTTTAAAAATGTAAA
1 AAAAATTTAAAAAATGTAAA
9137394 AAAAATTATAAAAAAT-TAAA
1 AAAAATT-TAAAAAATGTAAA
9137414 AA
1 AA
9137416 TGTAAATAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.26
Consensus pattern (20 bp):
AAAAATTTAAAAAATGTAAA
Found at i:9141237 original size:18 final size:18
Alignment explanation
Indices: 9141214--9141248 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
9141204 CAAGAATAGT
9141214 AAGCATCAAAATAGTTTC
1 AAGCATCAAAATAGTTTC
*
9141232 AAGCATGAAAATAGTTT
1 AAGCATCAAAATAGTTT
9141249 AGCATATCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.46, C:0.11, G:0.14, T:0.29
Consensus pattern (18 bp):
AAGCATCAAAATAGTTTC
Found at i:9141925 original size:24 final size:24
Alignment explanation
Indices: 9141893--9141942 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
9141883 TTTATCATTC
9141893 ATACTAGCATGCTCGTTTCCTTGT
1 ATACTAGCATGCTCGTTTCCTTGT
9141917 ATACTAGCATGCTCGTTTCCTTGT
1 ATACTAGCATGCTCGTTTCCTTGT
9141941 AT
1 AT
9141943 TCTCTATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.18, C:0.24, G:0.16, T:0.42
Consensus pattern (24 bp):
ATACTAGCATGCTCGTTTCCTTGT
Found at i:9150782 original size:30 final size:30
Alignment explanation
Indices: 9150746--9150817 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 30
9150736 ACACGGCCTG
*
9150746 GCCACACAGCCGTGTGGCGCACATGACCTA
1 GCCACACAGCCATGTGGCGCACATGACCTA
* * *
9150776 GCCACACGGCCATGTGGCTCACATGGCCTA
1 GCCACACAGCCATGTGGCGCACATGACCTA
*
9150806 G-CACATAGCCAT
1 GCCACACAGCCAT
9150818 ATTTTTTTTC
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
29 9 0.25
30 27 0.75
ACGTcount: A:0.24, C:0.36, G:0.25, T:0.15
Consensus pattern (30 bp):
GCCACACAGCCATGTGGCGCACATGACCTA
Found at i:9151897 original size:18 final size:19
Alignment explanation
Indices: 9151871--9151918 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
9151861 GAAAAAATTT
*
9151871 GAAAA-AAAAAACCA-AAA
1 GAAAAGAAAAAAACATAAA
9151888 GAAAAGAAAAAAACATAAA
1 GAAAAGAAAAAAACATAAA
9151907 -AAAAGAGAAAAA
1 GAAAAGA-AAAAA
9151919 TAAAATTTGA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
17 5 0.19
18 14 0.52
19 8 0.30
ACGTcount: A:0.81, C:0.06, G:0.10, T:0.02
Consensus pattern (19 bp):
GAAAAGAAAAAAACATAAA
Found at i:9151907 original size:20 final size:19
Alignment explanation
Indices: 9151875--9151918 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
9151865 AAATTTGAAA
9151875 AAAAAAACCAAAAGAAA-AG
1 AAAAAAACCAAAA-AAAGAG
*
9151894 AAAAAAACATAAAAAAAGAG
1 AAAAAAAC-CAAAAAAAGAG
9151914 AAAAA
1 AAAAA
9151919 TAAAATTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 11 0.50
20 11 0.50
ACGTcount: A:0.82, C:0.07, G:0.09, T:0.02
Consensus pattern (19 bp):
AAAAAAACCAAAAAAAGAG
Found at i:9153920 original size:6 final size:6
Alignment explanation
Indices: 9153906--9153942 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
9153896 TTCTACATTG
* *
9153906 GTTGTT GTTGCT GTTGCT GTTGCT GTTGTT GTTGCT G
1 GTTGCT GTTGCT GTTGCT GTTGCT GTTGCT GTTGCT G
9153943 GTTCCTTCGG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.00, C:0.11, G:0.35, T:0.54
Consensus pattern (6 bp):
GTTGCT
Found at i:9153926 original size:12 final size:12
Alignment explanation
Indices: 9153906--9153942 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
9153896 TTCTACATTG
9153906 GTTGTTGTTGCT
1 GTTGTTGTTGCT
*
9153918 GTTGCTGTTGCT
1 GTTGTTGTTGCT
9153930 GTTGTTGTTGCT
1 GTTGTTGTTGCT
9153942 G
1 G
9153943 GTTCCTTCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.00, C:0.11, G:0.35, T:0.54
Consensus pattern (12 bp):
GTTGTTGTTGCT
Found at i:9157548 original size:12 final size:12
Alignment explanation
Indices: 9157531--9157557 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
9157521 TTACATGCCC
9157531 TGTGCTAGGCCG
1 TGTGCTAGGCCG
9157543 TGTGCTAGGCCG
1 TGTGCTAGGCCG
9157555 TGT
1 TGT
9157558 AACTGATTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.22, G:0.41, T:0.30
Consensus pattern (12 bp):
TGTGCTAGGCCG
Found at i:9163146 original size:24 final size:24
Alignment explanation
Indices: 9163098--9163144 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
9163088 ATTGGTCATA
* *
9163098 GAGAGATTTGAGGAGGGATATTTG
1 GAGAGATTTGAGGAAGAATATTTG
9163122 GAGAGATTTGAGGATAGAATATT
1 GAGAGATTTGAGGA-AGAATATT
9163145 GGGATTTGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.34, C:0.00, G:0.36, T:0.30
Consensus pattern (24 bp):
GAGAGATTTGAGGAAGAATATTTG
Found at i:9163839 original size:27 final size:27
Alignment explanation
Indices: 9163796--9164640 Score: 892
Period size: 27 Copynumber: 31.4 Consensus size: 27
9163786 TCCCAAAAGA
* *
9163796 GGTAAAATGACCAAAATACCTCCAT-G
1 GGTAAAATGACCGAAATACCCCCATAG
9163822 GAGTAAAATGACCGAAATACCCCCATAG
1 G-GTAAAATGACCGAAATACCCCCATAG
* *
9163850 GGTAAAATGACCAAAATACCTCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* ** *
9163877 GGTAAAATGACTGAAATACCTGCATAT
1 GGTAAAATGACCGAAATACCCCCATAG
* **
9163904 GATAAAATGACCGAAATACCTGCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
** **
9163931 AATAAAATGACCGAAATACCATCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
9163958 GGTAAAATGACCG-AATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
*
9163984 GGTAAAATGACCGAAATACCCTCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
9164011 GGTAAAATGACTGAAATACCCCAATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
9164038 GGTAAAATGACC-AAATTACCTCAATAA
1 GGTAAAATGACCGAAA-TACCCCCATAG
*
9164065 GGTAGAATGACCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
9164092 GGTAAAATGACCGAAATA-CTCGATAG
1 GGTAAAATGACCGAAATACCCCCATAG
*
9164118 GGTAAAATGATCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
9164145 GGTAGAATGACCGAAATACCCCAATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
9164172 GGTAACATGACCGAAATACTCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* **
9164199 GGTAAAATGACTGAAATACCCTTATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
9164226 GGTAAAATGACTGAAATACCCCTATAA
1 GGTAAAATGACCGAAATACCCCCATAG
* *
9164253 GGTAAAATAACCGAAATACCCCCATTG
1 GGTAAAATGACCGAAATACCCCCATAG
* * ** *
9164280 GGTAGAATGATCGAAA-AATCCTATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
9164306 GGTAGAATGATCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
** *
9164333 GGTAAAATGACAAAAATACCCCCATAA
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
9164360 GGTAAAATGAACAAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
9164387 GGTAAAATGACCGAAATACTCCCATAA
1 GGTAAAATGACCGAAATACCCCCATAG
* * ** *
9164414 GATAGAATGGTCGAAATACCCCCATAA
1 GGTAAAATGACCGAAATACCCCCATAG
* * * ** *
9164441 GGTAGAATAATCGAAATAATCCTATAG
1 GGTAAAATGACCGAAATACCCCCATAG
*
9164468 GTTAAAATGACCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
** * *
9164495 GGTAAAATGACTAAAATACCCCTATAA
1 GGTAAAATGACCGAAATACCCCCATAG
* *
9164522 GGTATAATAACCGAAATACCCCCAT-G
1 GGTAAAATGACCGAAATACCCCCATAG
** *
9164548 GGATAAAATGATTGAAATACCCCTATAG
1 GG-TAAAATGACCGAAATACCCCCATAG
* *
9164576 GGTAGAATGACCGGAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * * ** *
9164603 GGTAAAATGATCAAAATATCCTTATAA
1 GGTAAAATGACCGAAATACCCCCATAG
9164630 GGTAAAATGAC
1 GGTAAAATGAC
9164641 TATTATACCC
Statistics
Matches: 683, Mismatches: 127, Indels: 17
0.83 0.15 0.02
Matches are distributed among these distances:
26 75 0.11
27 600 0.88
28 8 0.01
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGAAATACCCCCATAG
Found at i:9167808 original size:70 final size:70
Alignment explanation
Indices: 9167695--9167836 Score: 212
Period size: 70 Copynumber: 2.0 Consensus size: 70
9167685 GCTAATACAA
* * * **
9167695 TGTTTACAATAACAAATGAGCTTAAATAAGCTAATAGTAATAATAAAATAATTACAACTTGGCTT
1 TGTTTACAAGAACAAATGAGCATAAATAAGCTAAAAACAATAATAAAATAATTACAACTTGGCTT
9167760 AATCT
66 AATCT
* * *
9167765 TGTTTACAAGAACAAGTTAGCATAAATAAGCTAAAAACAATAATAAAATAATTACAATTTGGCTT
1 TGTTTACAAGAACAAATGAGCATAAATAAGCTAAAAACAATAATAAAATAATTACAACTTGGCTT
9167830 AATCT
66 AATCT
9167835 TG
1 TG
9167837 CAACTTGATT
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
70 64 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (70 bp):
TGTTTACAAGAACAAATGAGCATAAATAAGCTAAAAACAATAATAAAATAATTACAACTTGGCTT
AATCT
Found at i:9168047 original size:17 final size:17
Alignment explanation
Indices: 9168025--9168123 Score: 103
Period size: 17 Copynumber: 5.8 Consensus size: 17
9168015 CGTCACAAGT
* *
9168025 TTGGTGAGCTTGCAGTC
1 TTGGTGAGCTCGTAGTC
9168042 TTGGTGAGCTCGTAGTC
1 TTGGTGAGCTCGTAGTC
9168059 TTGGTGAGCTCGTAGTC
1 TTGGTGAGCTCGTAGTC
* **
9168076 TTGATGAGCTTATAGAT-
1 TTGGTGAGCTCGTAG-TC
*
9168093 TTGGCGAGCTCGTAGT-
1 TTGGTGAGCTCGTAGTC
*
9168109 TTTGTAGAGCTCGTA
1 TTGGT-GAGCTCGTA
9168124 CATTTAGTGA
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
16 4 0.06
17 64 0.93
18 1 0.01
ACGTcount: A:0.16, C:0.15, G:0.32, T:0.36
Consensus pattern (17 bp):
TTGGTGAGCTCGTAGTC
Done.