genome.fa.s16.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  49  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14332684--14332913	111	2.1	111	91	0	370	29	9	16	43	1.80
14337964--14338168	48	4.2	48	82	3	241	23	28	20	27	1.99
14342622--14342815	46	4.3	46	82	14	151	36	14	22	27	1.93
14342570--14342778	52	4.1	51	85	9	284	34	13	22	28	1.93
14342556--14342779	98	2.3	98	94	0	394	34	14	23	28	1.93
14342741--14342924	37	5.0	37	94	1	309	36	15	22	25	1.93
14348557--14348699	48	3.0	48	79	4	153	22	29	20	27	1.99
14358155--14358192	18	2.1	18	100	0	76	23	21	0	55	1.44
14360479--14360721	50	4.8	50	78	8	215	24	25	20	28	1.99
14368187--14368378	50	3.7	50	80	4	197	23	27	21	27	1.99
14369750--14369776	13	2.1	13	100	0	54	55	0	7	37	1.28
14370289--14370406	62	2.0	62	83	8	154	39	4	4	51	1.41
14380677--14380726	26	1.9	26	91	0	82	36	22	20	22	1.96
14380712--14380785	27	2.8	27	87	6	98	35	22	24	17	1.95
14380966--14381060	26	3.7	26	91	0	154	26	17	20	35	1.95
14380955--14381060	52	2.0	52	90	0	167	25	19	19	34	1.96
14386938--14386982	16	2.8	16	93	0	72	26	22	11	40	1.87
14395159--14395274	50	2.3	50	84	0	151	23	27	23	25	2.00
14400984--14401269	50	5.6	50	80	5	281	26	19	30	24	1.98
14403610--14403697	9	9.8	9	78	0	95	44	22	10	22	1.83
14403723--14403771	6	7.7	6	84	8	62	20	4	16	59	1.53
14410250--14410288	12	3.2	12	85	0	51	20	23	5	51	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14410586--14410721	50	2.6	53	76	6	134	22	28	22	27	1.99
14413054--14413097	22	2.0	23	90	4	72	54	4	0	40	1.21
14429105--14429158	20	2.7	20	74	8	56	44	12	31	11	1.78
14431016--14431218	27	7.5	27	77	5	178	42	19	15	22	1.89
14431016--14431197	81	2.2	81	85	5	235	40	20	15	22	1.91
14431016--14431218	81	2.5	81	83	4	232	42	19	15	22	1.89
14432193--14432238	17	2.6	17	86	3	56	43	13	13	30	1.81
14435516--14435650	27	5.0	27	81	4	112	43	20	14	21	1.87
14446588--14446764	27	6.5	27	80	3	167	26	15	29	28	1.96
14446588--14446743	82	1.9	81	85	3	215	26	16	29	27	1.96
14454624--14454798	27	6.5	27	79	6	158	26	16	29	28	1.96
14454623--14454798	54	3.3	55	80	6	182	26	15	28	28	1.96
14454620--14454771	81	1.9	80	83	5	198	26	17	28	27	1.97
14456509--14456658	43	3.5	42	83	6	176	32	24	14	30	1.94
14457424--14457464	20	2.1	19	86	9	55	21	9	4	63	1.44
14464282--14464327	18	2.6	18	80	16	51	13	0	15	71	1.14
14474109--14474184	20	3.9	21	76	11	72	26	28	17	27	1.97
14485659--14485695	16	2.3	16	90	0	56	27	32	2	37	1.71
14489098--14489124	6	4.5	6	100	0	54	33	0	66	0	0.92
14489140--14489191	25	2.1	25	92	0	86	40	0	1	57	1.10
14489816--14489843	13	2.2	13	100	0	56	42	7	17	32	1.77
14490161--14490204	12	3.6	12	84	3	61	15	0	4	79	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14491207--14491238	9	3.6	9	95	0	55	65	0	0	34	0.93
14491206--14491247	18	2.3	19	80	12	52	64	0	0	35	0.94
14491226--14491271	16	2.8	17	77	9	51	63	4	0	32	1.14
14491661--14491687	12	2.2	12	100	0	54	14	33	11	40	1.82
14494490--14494608	58	2.1	58	87	3	168	35	12	11	40	1.80
14494654--14494969	69	4.6	69	83	2	375	15	21	25	37	1.93
14494635--14494969	138	2.4	138	85	3	433	16	22	24	37	1.93
14497020--14497049	16	1.9	16	93	6	53	50	20	0	30	1.49
14497515--14497545	16	2.0	16	93	6	55	19	25	0	54	1.44
14498291--14498325	18	2.0	18	94	5	63	17	45	25	11	1.81
14499927--14499996	25	2.8	25	89	4	106	32	22	22	21	1.98
14501007--14501035	2	14.5	2	100	0	58	48	51	0	0	1.00
14501686--14501862	25	7.1	25	71	14	107	35	19	25	19	1.95
14503793--14503825	16	2.1	16	88	11	50	24	12	9	54	1.66
14509276--14509339	9	6.7	9	80	16	51	81	3	4	10	0.96
14509295--14509362	12	5.8	12	77	6	59	73	8	5	11	1.24
14509277--14509384	34	3.1	34	82	5	110	76	6	5	11	1.13
14509286--14509385	27	3.4	28	76	17	96	76	7	6	11	1.16
14509283--14509363	40	2.0	42	87	4	121	76	7	4	11	1.14
14509347--14509394	22	2.2	21	88	7	69	75	6	10	8	1.20
14510262--14510288	13	2.1	13	100	0	54	70	0	14	14	1.17
14510265--14510306	21	2.0	22	85	4	59	73	0	14	11	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14511570--14512181	100	6.1	100	85	1	787	32	22	19	24	1.98
14511570--14512232	50	13.3	50	67	5	300	32	22	20	24	1.98
14511570--14512259	100	6.9	100	82	3	744	32	22	20	24	1.98
14512130--14512443	150	2.1	151	84	1	398	33	24	18	23	1.96
14527742--14527805	13	4.9	12	74	14	56	31	21	4	42	1.74
14527742--14527814	26	2.7	26	83	8	76	30	23	4	42	1.73
14529759--14529856	27	3.6	26	78	10	81	14	22	22	40	1.90
14536613--14536706	47	2.0	48	87	2	136	45	18	14	21	1.85
14537112--14537208	25	3.9	25	97	0	176	32	22	19	24	1.97
14541676--14541852	50	3.4	50	77	4	138	25	22	27	24	2.00
14545657--14545742	44	2.0	42	84	11	111	24	20	22	32	1.98
14552036--14552073	20	1.9	20	88	0	58	13	31	18	36	1.89
14554030--14554203	85	2.0	85	91	2	278	19	27	12	40	1.88
14555409--14555605	98	2.0	98	100	0	394	36	24	11	28	1.90
14556087--14556147	26	2.2	27	80	11	70	60	6	4	27	1.42
14556364--14556409	3	15.3	3	86	0	65	69	0	2	28	1.00
14557824--14558317	84	5.7	85	69	14	244	26	24	20	27	1.99
14557772--14558456	217	3.2	217	90	3	1018	26	24	21	28	1.99
14557791--14558317	44	12.1	45	71	15	295	26	24	21	27	1.99
14559338--14559450	54	2.1	54	98	0	217	46	6	19	28	1.74
14563812--14564008	98	2.0	98	98	0	385	35	24	11	28	1.90
14564285--14564317	15	2.2	15	94	0	57	63	12	0	24	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14564764--14564806	3	14.3	3	80	0	50	72	0	2	25	0.97
14564764--14564797	12	2.8	12	95	0	59	76	0	0	23	0.79
14568493--14568534	18	2.3	18	87	0	57	21	26	7	45	1.77
14570971--14571054	40	2.1	40	86	4	116	27	21	27	23	1.99
14571106--14571211	40	2.6	39	83	5	122	23	21	27	27	1.99
14570971--14571323	154	2.3	154	85	3	469	27	19	25	27	1.99
14571148--14571392	114	2.1	115	85	3	325	27	20	22	29	1.98
14571708--14571941	7	32.9	7	72	8	123	20	1	34	44	1.60
14574590--14574632	13	3.2	13	84	12	52	23	2	9	65	1.34
14575103--14575265	78	2.2	72	85	8	218	34	9	6	49	1.62
14575588--14575632	9	5.0	9	83	0	63	42	22	4	31	1.73
14577902--14577972	21	3.4	21	80	0	79	39	14	40	5	1.69
14578316--14578517	43	4.7	43	79	2	201	28	20	22	27	1.99
14578585--14578626	22	1.9	22	90	0	66	42	23	16	16	1.88
14585906--14585952	21	2.2	21	85	7	60	19	6	8	65	1.41
14594922--14594989	30	2.2	31	84	2	84	26	17	7	48	1.73
14598244--14598274	14	2.1	15	94	5	55	19	0	0	80	0.71
14608152--14608192	21	2.0	21	85	0	55	36	7	34	21	1.82
14608079--14609362	259	4.9	259	85	2	1616	29	17	25	27	1.97
14608667--14608712	21	2.2	21	84	0	56	32	10	34	21	1.88
14608079--14609354	520	2.5	520	90	0	1991	28	17	25	27	1.97
14609384--14609586	45	4.5	45	86	1	239	31	21	23	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14609384--14609797	45	9.5	44	72	12	187	30	21	22	24	1.99
14609469--14609850	129	3.0	127	86	3	471	30	21	21	26	1.98
14610497--14610553	11	5.7	10	86	14	66	19	1	3	75	1.04
14611340--14611380	9	4.7	9	77	17	50	19	2	0	78	0.87
14611343--14611388	11	4.4	11	81	5	51	21	4	0	73	1.00
14611663--14611719	17	3.5	16	73	20	55	31	7	1	59	1.34
14613824--14613897	38	1.9	38	100	0	148	47	16	10	25	1.79
14616120--14616240	61	2.0	59	82	6	145	52	4	4	39	1.40
14625466--14625528	30	2.1	30	93	0	108	23	4	15	55	1.59
14625611--14625650	18	2.1	18	86	9	53	25	0	10	65	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175