Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53248092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1300000 characters in sequence are not A, C, G, or T
File 50 of 175
Found at i:14633023 original size:18 final size:18
Alignment explanation
Indices: 14633000--14633036 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
14632990 TTTCATAATT
14633000 TACTTATATATATATACA
1 TACTTATATATATATACA
*
14633018 TACTTATATATATTTACA
1 TACTTATATATATATACA
14633036 T
1 T
14633037 TTTATAACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.41, C:0.11, G:0.00, T:0.49
Consensus pattern (18 bp):
TACTTATATATATATACA
Found at i:14633111 original size:6 final size:7
Alignment explanation
Indices: 14633079--14633110 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
14633069 ATATTTATAT
14633079 TTTTTTA
1 TTTTTTA
14633086 TTTTTTA
1 TTTTTTA
14633093 TTTTTTA
1 TTTTTTA
14633100 -TTTTTA
1 TTTTTTA
14633106 TTTTT
1 TTTTT
14633111 ACAAATTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.25
7 18 0.75
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:14633701 original size:73 final size:73
Alignment explanation
Indices: 14633560--14633702 Score: 205
Period size: 73 Copynumber: 2.0 Consensus size: 73
14633550 CCTTTCAAAC
** ** * **
14633560 TCAAGTTTTAAATGATCTCGGGAATTAAGAGGAGATCGTGTCCTAACTTACTGGGCATGATCTTT
1 TCAAGTTTTAAATGATCTCGAAAATTAAGAAAAGATCATGTCCTAACTTACTGGGCATGATCCCT
14633625 TTTTTTTA
66 TTTTTTTA
* *
14633633 TCAAGTTTTAAATGATCTCGAAAATTAAGAAAAGATTATGTCCTAACTTACTGGGTATGATCCCT
1 TCAAGTTTTAAATGATCTCGAAAATTAAGAAAAGATCATGTCCTAACTTACTGGGCATGATCCCT
14633698 TTTTT
66 TTTTT
14633703 AATCCAAGAA
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
73 61 1.00
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.39
Consensus pattern (73 bp):
TCAAGTTTTAAATGATCTCGAAAATTAAGAAAAGATCATGTCCTAACTTACTGGGCATGATCCCT
TTTTTTTA
Found at i:14634335 original size:34 final size:35
Alignment explanation
Indices: 14634291--14634357 Score: 118
Period size: 34 Copynumber: 1.9 Consensus size: 35
14634281 CAGTAAAATA
14634291 TTTTCCGTAAAATGATTT-CTGGAAAATATTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
14634325 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
14634358 CTGGTGTTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 17 0.55
35 14 0.45
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:14634438 original size:14 final size:13
Alignment explanation
Indices: 14634405--14634429 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14634395 TGCTTGGCAG
14634405 ATTTTTTGAAAAT
1 ATTTTTTGAAAAT
14634418 ATTTTTTGAAAA
1 ATTTTTTGAAAA
14634430 AGTTGTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (13 bp):
ATTTTTTGAAAAT
Found at i:14635586 original size:26 final size:27
Alignment explanation
Indices: 14635530--14635587 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 27
14635520 AAATATATAT
* **
14635530 TTTTTATTTTTTTTATTTTAAAATACT
1 TTTTTATTTTTTATATTTTAAAATAAA
14635557 TTTTTATTTTTTAT-TTTTAAAATAAA
1 TTTTTATTTTTTATATTTTAAAATAAA
14635583 TTTTT
1 TTTTT
14635588 GGTGTTTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 15 0.54
27 13 0.46
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.71
Consensus pattern (27 bp):
TTTTTATTTTTTATATTTTAAAATAAA
Found at i:14635586 original size:27 final size:28
Alignment explanation
Indices: 14635519--14635587 Score: 88
Period size: 27 Copynumber: 2.5 Consensus size: 28
14635509 CCGAATATAA
* *
14635519 TAAATATATATTTTTTATTTTTTTTATTT
1 TAAA-ATAAATTTTTTATTTTTTATATTT
*
14635548 TAAAAT-ACTTTTTTATTTTTTAT-TTT
1 TAAAATAAATTTTTTATTTTTTATATTT
14635574 TAAAATAAATTTTT
1 TAAAATAAATTTTT
14635588 GGTGTTTATT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
26 9 0.26
27 20 0.57
28 2 0.06
29 4 0.11
ACGTcount: A:0.32, C:0.01, G:0.00, T:0.67
Consensus pattern (28 bp):
TAAAATAAATTTTTTATTTTTTATATTT
Found at i:14636936 original size:16 final size:16
Alignment explanation
Indices: 14636910--14636949 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
14636900 TTGTATGTAC
*
14636910 AAAAAAAATTACATAT
1 AAAATAAATTACATAT
* *
14636926 AGAATAAATTATATAT
1 AAAATAAATTACATAT
14636942 AAAATAAA
1 AAAATAAA
14636950 AAAATTGTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.28
Consensus pattern (16 bp):
AAAATAAATTACATAT
Found at i:14637468 original size:24 final size:23
Alignment explanation
Indices: 14637406--14637478 Score: 60
Period size: 23 Copynumber: 3.1 Consensus size: 23
14637396 TTTTTTTAAA
* *
14637406 AAAAATAGATATATCT-AAAAAT
1 AAAAATAAATATATTTAAAAAAT
* *
14637428 AAAAA-AGAAAATTTTTAAAAAAT
1 AAAAATA-AATATATTTAAAAAAT
*
14637451 AAAAATACAATATATTTAATTAAAT
1 AAAAATA-AATATATTTAA-AAAAT
14637476 AAA
1 AAA
14637479 TATGGATTAA
Statistics
Matches: 39, Mismatches: 8, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
21 1 0.03
22 10 0.26
23 11 0.28
24 10 0.26
25 7 0.18
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.29
Consensus pattern (23 bp):
AAAAATAAATATATTTAAAAAAT
Found at i:14640091 original size:30 final size:29
Alignment explanation
Indices: 14640055--14640144 Score: 144
Period size: 30 Copynumber: 3.0 Consensus size: 29
14640045 ATTATGAGAG
14640055 TATCTAGACATATTTGACCAATACTTTATT
1 TATCTAGACATATTTGACC-ATACTTTATT
*
14640085 TATCTAGACATATTTGATCCATATTTTATT
1 TATCTAGACATATTTGA-CCATACTTTATT
14640115 TATCTAGACATATTTGACCCATACTTTATT
1 TATCTAGACATATTTGA-CCATACTTTATT
14640145 AATTAACTGA
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
30 54 0.96
31 2 0.04
ACGTcount: A:0.31, C:0.17, G:0.07, T:0.46
Consensus pattern (29 bp):
TATCTAGACATATTTGACCATACTTTATT
Found at i:14645233 original size:25 final size:24
Alignment explanation
Indices: 14645187--14645233 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
14645177 TCATGAAAAC
* *
14645187 ATTAAATATGAATCATATAAATCA
1 ATTAAATATGAATCAAACAAATCA
*
14645211 ATTAAATTTTGAATCAAACAAAT
1 ATTAAA-TATGAATCAAACAAAT
14645234 AATGCAATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 6 0.32
25 13 0.68
ACGTcount: A:0.53, C:0.09, G:0.04, T:0.34
Consensus pattern (24 bp):
ATTAAATATGAATCAAACAAATCA
Found at i:14648354 original size:10 final size:10
Alignment explanation
Indices: 14648339--14648376 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
14648329 TAATCATTTG
14648339 AAAATTATTA
1 AAAATTATTA
*
14648349 AAAATTAATA
1 AAAATTATTA
*
14648359 TAAATTATTA
1 AAAATTATTA
14648369 AAAATTAT
1 AAAATTAT
14648377 AATAAAATAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (10 bp):
AAAATTATTA
Found at i:14648387 original size:20 final size:20
Alignment explanation
Indices: 14648339--14648387 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 20
14648329 TAATCATTTG
14648339 AAAATTATTAAAAATTAATAT
1 AAAA-TATTAAAAATTAATAT
*
14648360 AAATTATTAAAAATT-ATAAT
1 AAAATATTAAAAATTAAT-AT
14648380 AAAATATT
1 AAAATATT
14648388 CGAATTGCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 20 0.80
21 3 0.12
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
AAAATATTAAAAATTAATAT
Found at i:14648857 original size:32 final size:31
Alignment explanation
Indices: 14648795--14648860 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 31
14648785 TTTTTTATAC
*
14648795 TTTTTTATAATTGTTAAGAATTTCTAAATTA
1 TTTTTTATAATTGTTAAGAATTTATAAATTA
* *
14648826 TTTTTTATATATTTTTAATAATGTTAT-AATTA
1 TTTTTTATA-ATTGTTAAGAAT-TTATAAATTA
14648858 TTT
1 TTT
14648861 GAAAAATCAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
31 9 0.30
32 18 0.60
33 3 0.10
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.61
Consensus pattern (31 bp):
TTTTTTATAATTGTTAAGAATTTATAAATTA
Found at i:14649443 original size:10 final size:9
Alignment explanation
Indices: 14649378--14649465 Score: 65
Period size: 9 Copynumber: 9.2 Consensus size: 9
14649368 TTTAATTAAT
*
14649378 TTTTTAAAA
1 TTTTAAAAA
14649387 TTTTAAAAA
1 TTTTAAAAA
14649396 TTTTAAAAA
1 TTTTAAAAA
14649405 TTTATAAAAACTA
1 TTT-T-AAAA--A
14649418 TTTTTAAAAA
1 -TTTTAAAAA
14649428 --TTAAAAA
1 TTTTAAAAA
14649435 TCTTT-AAAA
1 T-TTTAAAAA
14649444 TTATTACAAAA
1 TT-TTA-AAAA
*
14649455 TTATAAAAA
1 TTTTAAAAA
14649464 TT
1 TT
14649466 ATGAAAAAAT
Statistics
Matches: 66, Mismatches: 2, Indels: 22
0.73 0.02 0.24
Matches are distributed among these distances:
7 7 0.11
8 1 0.02
9 33 0.50
10 6 0.09
11 10 0.15
12 4 0.06
13 2 0.03
14 3 0.05
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (9 bp):
TTTTAAAAA
Found at i:14650836 original size:23 final size:23
Alignment explanation
Indices: 14650809--14650861 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
14650799 AGTGTTATTG
14650809 ATCAGTGGTAGCTTAGGCTACAT
1 ATCAGTGGTAGCTTAGGCTACAT
* *
14650832 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTAGGCTACAT
14650855 ATCAGTG
1 ATCAGTG
14650862 TGTCACTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTAGGCTACAT
Found at i:14655821 original size:18 final size:18
Alignment explanation
Indices: 14655800--14655842 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
14655790 GAAAATTCCT
14655800 GAAGGATTTAAAATCCCA
1 GAAGGATTTAAAATCCCA
14655818 GAAGGATTTAAAATCCCA
1 GAAGGATTTAAAATCCCA
14655836 GAAGGAT
1 GAAGGAT
14655843 ATAGAGTTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.44, C:0.14, G:0.21, T:0.21
Consensus pattern (18 bp):
GAAGGATTTAAAATCCCA
Found at i:14657431 original size:27 final size:26
Alignment explanation
Indices: 14657401--14657452 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 26
14657391 CTAAAGTAAA
*
14657401 TTCTCTATTGCT-TTCATATTTTCTTTG
1 TTCTCTATT-CTCTTCAT-CTTTCTTTG
*
14657428 TTCTTTATTCTCTTCATCTTTCTTT
1 TTCTCTATTCTCTTCATCTTTCTTT
14657453 ATTTTATAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
26 9 0.41
27 13 0.59
ACGTcount: A:0.10, C:0.21, G:0.04, T:0.65
Consensus pattern (26 bp):
TTCTCTATTCTCTTCATCTTTCTTTG
Found at i:14658640 original size:16 final size:16
Alignment explanation
Indices: 14658619--14658663 Score: 60
Period size: 14 Copynumber: 3.0 Consensus size: 16
14658609 CTTATTATTA
14658619 TTATTATTTACTTTAT
1 TTATTATTTACTTTAT
*
14658635 TTATTATTTAC-TT-G
1 TTATTATTTACTTTAT
14658649 TTATTATTT-CTTTAT
1 TTATTATTTACTTTAT
14658664 CCTTTTACAC
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
13 1 0.04
14 11 0.44
15 2 0.08
16 11 0.44
ACGTcount: A:0.22, C:0.07, G:0.02, T:0.69
Consensus pattern (16 bp):
TTATTATTTACTTTAT
Found at i:14660107 original size:13 final size:12
Alignment explanation
Indices: 14660083--14660112 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
14660073 AAAGAACAAA
14660083 AAATATATATAT
1 AAATATATATAT
14660095 AAATATAATATAT
1 AAATAT-ATATAT
14660108 AAATA
1 AAATA
14660113 AACTATGGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.35
13 11 0.65
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (12 bp):
AAATATATATAT
Found at i:14663800 original size:40 final size:40
Alignment explanation
Indices: 14663601--14663786 Score: 259
Period size: 40 Copynumber: 4.7 Consensus size: 40
14663591 TTGAATGATG
* * * *
14663601 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
14663641 TTCGGGTTAACTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
14663681 TCCGGGTTAAGTCCCGAAGGGATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
14663721 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
14663762 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
14663787 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
40 123 0.93
41 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:14663804 original size:80 final size:80
Alignment explanation
Indices: 14663601--14663809 Score: 246
Period size: 80 Copynumber: 2.6 Consensus size: 80
14663591 TTGAATGATG
** * * * *
14663601 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATTCGGGTTAACTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTTACTAAATCCGGGTTAACTCCCGAAGGCATT
14663665 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
* * ** *
14663681 TCCGGGTTAAGTCCCGAAGGGATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAACTCCCGAAGGCATTT
14663746 GTGCGAGTTACTATAA
66 GTGCGAGTTACTA-AA
* *
14663762 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGTTAA
14663810 ATTCTGAAGG
Statistics
Matches: 113, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
79 8 0.07
80 96 0.85
81 9 0.08
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAACTCCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:14665404 original size:132 final size:132
Alignment explanation
Indices: 14665167--14665404 Score: 449
Period size: 132 Copynumber: 1.8 Consensus size: 132
14665157 GGGTGTTACG
14665167 TTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCTTTGATCTGCTC
1 TTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCTTTGATCTGCTC
*
14665232 CACTACTGCATAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTGCCCAGGGAGATAG
66 CACTACTGCATAGGGAGAAAAGATCTGTAATCTTCAATCTATTCCACTGTTGCCCAGGGAGATAG
14665297 AA
131 AA
14665299 TTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCTTTGATCTGCTC
1 TTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCTTTGATCTGCTC
* *
14665364 CACTATTGCTTAGGGAGAAAAGATCTGTAATCTTCAATCTA
66 CACTACTGCATAGGGAGAAAAGATCTGTAATCTTCAATCTA
14665405 CTTCACGCCA
Statistics
Matches: 103, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
132 103 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (132 bp):
TTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCTTTGATCTGCTC
CACTACTGCATAGGGAGAAAAGATCTGTAATCTTCAATCTATTCCACTGTTGCCCAGGGAGATAG
AA
Found at i:14665479 original size:45 final size:45
Alignment explanation
Indices: 14665421--14666162 Score: 525
Period size: 45 Copynumber: 16.3 Consensus size: 45
14665411 GCCAATACAT
* * * *
14665421 GAAGATAAGATCTGTTTTCTTCGATCTGCTTTGCCACCAGTATGG
1 GAAGACAAGATCTGTTTTCTTTGATCTACTTCGCCACCAGTATGG
* * *
14665466 GAAGGCAAGATCTGTTATCTTTGATCTACTTCGTCACCAGTATGG
1 GAAGACAAGATCTGTTTTCTTTGATCTACTTCGCCACCAGTATGG
* * ***
14665511 GAAGACAAGATTTGTTTTCTTTGATCTACTTC-ACACCAGTACAT
1 GAAGACAAGATCTGTTTTCTTTGATCTACTTCGCCACCAGTATGG
* *
14665555 GAGGACAAGATTTGTTTTCTTTGATCTACTTCGCCACCAGTATGG
1 GAAGACAAGATCTGTTTTCTTTGATCTACTTCGCCACCAGTATGG
**** * * * * * **
14665600 GAAGACAAGATTACATGAAGACAAGATCTG-TTTTCTTCGATCTACTTC-GCCACCAG
1 GAAGACAAGA-T-C-TGTTTTC----TTTGATCTACTTCG--CCAC--CAG-TA-TGG
* * * * ***
14665656 TATGGGA-AGATAAGATCTGTTTTCTTTGATCTACTTC-ACGCCAGTACAT
1 GA--AGACA-A---GATCTGTTTTCTTTGATCTACTTCGCCACCAGTATGG
*
14665705 GAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGG
1 GAAGACAAGATCTGTTTTCTTTGATCTACTTCGCCACCAGTATGG
* * ***
14665750 GAAGACAAGATCTATTTTCTTTGATCTACTTC-ACACCAGTACAT
1 GAAGACAAGATCTGTTTTCTTTGATCTACTTCGCCACCAGTATGG
* **
14665794 GAAGACAAGATCTATTTTCTTCAATCTACTTCGCCACCAGTATGG
1 GAAGACAAGATCTGTTTTCTTTGATCTACTTCGCCACCAGTATGG
* * ***
14665839 GAAGACAAGATCTGTTTTCTTTGATCTACTTC-ACGCCAGTACAT
1 GAAGACAAGATCTGTTTTCTTTGATCTACTTCGCCACCAGTATGG
* * * * ***
14665883 GAAGACAAGATCTGTTTTCTTCGATCTACTTC-ACGCCAATACAT
1 GAAGACAAGATCTGTTTTCTTTGATCTACTTCGCCACCAGTATGG
** * *
14665927 GAAGACAAGATCTACTTTCTTCGATCTATTTCGCCACCAGTATGG
1 GAAGACAAGATCTGTTTTCTTTGATCTACTTCGCCACCAGTATGG
* * * * ***
14665972 GAAGACAAGATCTGCTATCTTTGATCTACTTC-ACGCCAGTACAT
1 GAAGACAAGATCTGTTTTCTTTGATCTACTTCGCCACCAGTATGG
* * * *
14666016 GAAGACAGGATATGCTTTCTTCGATCTACTTCGCCACCAGTATGG
1 GAAGACAAGATCTGTTTTCTTTGATCTACTTCGCCACCAGTATGG
* * * * ***
14666061 GAAGACAAGATCTATTATCTTTGATCTACTTC-ACGCCAGTACAT
1 GAAGACAAGATCTGTTTTCTTTGATCTACTTCGCCACCAGTATGG
* * *
14666105 GAAGACAAGATCTAATTTT-TTCGATCTACTTCACCACCAGTATGG
1 GAAGACAAGATCT-GTTTTCTTTGATCTACTTCGCCACCAGTATGG
14666150 GAAGACAAGATCT
1 GAAGACAAGATCT
14666163 ACTGCTACTC
Statistics
Matches: 547, Mismatches: 121, Indels: 58
0.75 0.17 0.08
Matches are distributed among these distances:
44 245 0.45
45 249 0.46
46 1 0.00
47 3 0.01
48 4 0.01
49 3 0.01
50 2 0.00
51 8 0.01
52 4 0.01
53 3 0.01
54 4 0.01
55 8 0.01
56 2 0.00
57 1 0.00
58 6 0.01
59 1 0.00
60 1 0.00
61 2 0.00
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (45 bp):
GAAGACAAGATCTGTTTTCTTTGATCTACTTCGCCACCAGTATGG
Found at i:14665548 original size:89 final size:89
Alignment explanation
Indices: 14665421--14666162 Score: 580
Period size: 89 Copynumber: 8.1 Consensus size: 89
14665411 GCCAATACAT
* * ** * *
14665421 GAAGATAAGATCTGTTTTCTTCGATCTGCTTTGC-CACCAGTATGGGAAGGCAAGATCTGTTATC
1 GAAGACAAGATCTGTTTTCTTCGATCTAC-TT-CACACCAGTACAGGAAGACAAGATCTGTTTTC
*
14665485 TTTGATCTACTTCGTCACCAGTATGG
64 TTTGATCTACTTCGCCACCAGTATGG
* * * * *
14665511 GAAGACAAGATTTGTTTTCTTTGATCTACTTCACACCAGTACATGAGGACAAGATTTGTTTTCTT
1 GAAGACAAGATCTGTTTTCTTCGATCTACTTCACACCAGTACAGGAAGACAAGATCTGTTTTCTT
14665576 TGATCTACTTCGCCACCAGTATGG
66 TGATCTACTTCGCCACCAGTATGG
**** * * * * * * **
14665600 GAAGACAAGATTACATGAAGACAAGATCTG-TTTTCTTCGATCTACTTC-GCCACCAGTATGGGA
1 GAAGACAAGA-T-C-TGTTTTC---TTC-GATCTACTTC-A-C-AC--CAG-TA-CAGGAAGACA
* * ***
14665663 AGATAAGATCTGTTTTCTTTGATCTACTTC-ACGCCAGTACAT
52 AG-----ATCTGTTTTCTTTGATCTACTTCGCCACCAGTATGG
* ** *
14665705 GAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTATTTTCT
1 GAAGACAAGATCTGTTTTCTTCGATCTACTTC-ACACCAGTACAGGAAGACAAGATCTGTTTTCT
* ***
14665770 TTGATCTACTTC-ACACCAGTACAT
65 TTGATCTACTTCGCCACCAGTATGG
* * * **
14665794 GAAGACAAGATCTATTTTCTTCAATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTTTCT
1 GAAGACAAGATCTGTTTTCTTCGATCTACTTC-ACACCAGTACAGGAAGACAAGATCTGTTTTCT
* * ***
14665859 TTGATCTACTTC-ACGCCAGTACAT
65 TTGATCTACTTCGCCACCAGTATGG
* * * **
14665883 GAAGACAAGATCTGTTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTT
1 GAAGACAAGATCTGTTTTCTTCGATCTACTTCACACCAGTACAGGAAGACAAGATCTGTTTTCTT
* *
14665948 CGATCTATTTCGCCACCAGTATGG
66 TGATCTACTTCGCCACCAGTATGG
* * * * * * * *
14665972 GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAGGATATGCTTTCTT
1 GAAGACAAGATCTGTTTTCTTCGATCTACTTCACACCAGTACAGGAAGACAAGATCTGTTTTCTT
*
14666037 CGATCTACTTCGCCACCAGTATGG
66 TGATCTACTTCGCCACCAGTATGG
* * * * * *
14666061 GAAGACAAGATCTATTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTAATTTT-T
1 GAAGACAAGATCTGTTTTCTTCGATCTACTTCACACCAGTACAGGAAGACAAGATCT-GTTTTCT
* *
14666125 TCGATCTACTTCACCACCAGTATGG
65 TTGATCTACTTCGCCACCAGTATGG
14666150 GAAGACAAGATCT
1 GAAGACAAGATCT
14666163 ACTGCTACTC
Statistics
Matches: 542, Mismatches: 86, Indels: 49
0.80 0.13 0.07
Matches are distributed among these distances:
88 35 0.06
89 387 0.71
90 29 0.05
92 3 0.01
94 6 0.01
95 9 0.02
96 3 0.01
97 3 0.01
98 4 0.01
99 10 0.02
100 2 0.00
101 7 0.01
102 3 0.01
103 1 0.00
104 1 0.00
105 17 0.03
106 22 0.04
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (89 bp):
GAAGACAAGATCTGTTTTCTTCGATCTACTTCACACCAGTACAGGAAGACAAGATCTGTTTTCTT
TGATCTACTTCGCCACCAGTATGG
Found at i:14665645 original size:61 final size:61
Alignment explanation
Indices: 14665550--14665671 Score: 208
Period size: 61 Copynumber: 2.0 Consensus size: 61
14665540 TTCACACCAG
* * *
14665550 TACATGAGGACAAGATTTGTTTTCTTTGATCTACTTCGCCACCAGTATGGGAAGACAAGAT
1 TACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGAT
*
14665611 TACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGATAAGAT
1 TACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGAT
14665672 CTGTTTTCTT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 57 1.00
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.30
Consensus pattern (61 bp):
TACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGAT
Found at i:14665700 original size:105 final size:105
Alignment explanation
Indices: 14665511--14665715 Score: 268
Period size: 105 Copynumber: 2.0 Consensus size: 105
14665501 ACCAGTATGG
* * * * *
14665511 GAAGACAAGATTTGTTTTCTTTGATCTACTTCACACCAGTACATGAGGACAAGATTTGTTTTCTT
1 GAAGACAAGATCTGTTTTCTTCGATCTACTTCACACCAGTACAGGAAGACAAGATCTGTTTTCTT
* **
14665576 TGATCTACTTCGCCACCAGTATGGGAAGACAAGATTACAT
66 TGATCTACTTCGACACCAGTACAGGAAGACAAGATTACAT
* ** *
14665616 GAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGATAAGATCTGTTTTCT
1 GAAGACAAGATCTGTTTTCTTCGATCTACTTC-ACACCAGTACAGGAAGACAAGATCTGTTTTCT
* *
14665681 TTGATCTACTTC-ACGCCAGTACATGAAGACAAGAT
65 TTGATCTACTTCGACACCAGTACAGGAAGACAAGAT
14665716 CTGTTTTCTT
Statistics
Matches: 85, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
105 48 0.56
106 37 0.44
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (105 bp):
GAAGACAAGATCTGTTTTCTTCGATCTACTTCACACCAGTACAGGAAGACAAGATCTGTTTTCTT
TGATCTACTTCGACACCAGTACAGGAAGACAAGATTACAT
Found at i:14665742 original size:150 final size:150
Alignment explanation
Indices: 14665466--14665760 Score: 500
Period size: 150 Copynumber: 2.0 Consensus size: 150
14665456 ACCAGTATGG
* * * *
14665466 GAAGGCAAGATCTGTTATCTTTGATCTACTTCGTCACCAGTATGGGAAGACAAGATTTGTTTTCT
1 GAAGACAAGATCTGTTATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTTTCT
* * *
14665531 TTGATCTACTTCACACCAGTACATGAGGACAAGATTTGTTTTCTTTGATCTACTTCGCCACCAGT
66 TTGATCTACTTCACACCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGT
14665596 ATGGGAAGACAAGATTACAT
131 ATGGGAAGACAAGATTACAT
* *
14665616 GAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGATAAGATCTGTTTTCT
1 GAAGACAAGATCTGTTATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTTTCT
*
14665681 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGT
66 TTGATCTACTTCACACCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGT
14665746 ATGGGAAGACAAGAT
131 ATGGGAAGACAAGAT
14665761 CTATTTTCTT
Statistics
Matches: 135, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
150 135 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (150 bp):
GAAGACAAGATCTGTTATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTTTCT
TTGATCTACTTCACACCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGT
ATGGGAAGACAAGATTACAT
Found at i:14665910 original size:178 final size:177
Alignment explanation
Indices: 14665611--14666163 Score: 687
Period size: 178 Copynumber: 3.1 Consensus size: 177
14665601 AAGACAAGAT
* * *
14665611 TACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGATAAGATCTGT
1 TACAGGAAGACAAGATCTATTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGT
* *
14665676 TTTCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCA
66 TTTCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTACTTC-ACG
*** *
14665741 CCAGTATGGGAAGACAAGATCTATTTTCTTTGATCTACTTCACACCAG
130 CCAGTACATGAAGACAAGATCTATTTTCTTCGATCTACTTCACACCAG
* *
14665789 TACATGAAGACAAGATCTATTTTCTTCAATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGT
1 TACAGGAAGACAAGATCTATTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGT
14665854 TTTCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCACGC
66 TTTCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCACGC
* * * *
14665919 CAATACATGAAGACAAGATCTACTTTCTTCGATCTATTTCGCCACCAG
131 CAGTACATGAAGACAAGATCTATTTTCTTCGATCTACTTC-ACACCAG
** ** * * * * *** * * *
14665967 TATGGGAAGACAAGATCTGCTATCTTTGATCTACTTC-ACGCCAGTACATGAAGACAGGATATGC
1 TACAGGAAGACAAGATCTATTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGT
* * * *** * * *
14666031 TTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTATTATCTTTGATCTACTTCACG
66 TTTCTTTGATCTACTTC-ACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCACG
14666096 CCAGTACATGAAGACAAGATCTAATTTT-TTCGATCTACTTCACCACCAG
130 CCAGTACATGAAGACAAGATCT-ATTTTCTTCGATCTACTTCA-CACCAG
**
14666145 TATGGGAAGACAAGATCTA
1 TACAGGAAGACAAGATCTA
14666164 CTGCTACTCC
Statistics
Matches: 328, Mismatches: 43, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
177 70 0.21
178 254 0.77
179 4 0.01
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.31
Consensus pattern (177 bp):
TACAGGAAGACAAGATCTATTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGT
TTTCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCACGC
CAGTACATGAAGACAAGATCTATTTTCTTCGATCTACTTCACACCAG
Found at i:14666003 original size:222 final size:222
Alignment explanation
Indices: 14665616--14666165 Score: 814
Period size: 222 Copynumber: 2.5 Consensus size: 222
14665606 AAGATTACAT
* * * *** *
14665616 GAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGATAAGATCTGTTTTCT
1 GAAGACAAGATCTGTTTTCTTTGATCTACTTC-ACGCCAGTACATGAAGACAAGATCTGTTTTCT
* **
14665681 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGT
65 TCGATCTACTTCACGCCAGTACATGAAGACAAGATCTACTTTCTTCGATCTACTTCGCCACCAGT
* * * *
14665746 ATGGGAAGACAAGATCTATTTTCTTTGATCTACTTCACACCAGTACATGAAGACAAGATCTATTT
130 ATGGGAAGACAAGATCTACTATCTTTGATCTACTTCACACCAGTACATGAAGACAAGATATACTT
14665811 TCTTCAATCTACTTCGCCACCAGTATGG
195 TCTTCAATCTACTTCGCCACCAGTATGG
14665839 GAAGACAAGATCTGTTTTCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTT
1 GAAGACAAGATCTGTTTTCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTT
* *
14665904 CGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTTCGATCTATTTCGCCACCAGTA
66 CGATCTACTTCACGCCAGTACATGAAGACAAGATCTACTTTCTTCGATCTACTTCGCCACCAGTA
* * * *
14665969 TGGGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAGGATATGCTTT
131 TGGGAAGACAAGATCTACTATCTTTGATCTACTTCACACCAGTACATGAAGACAAGATATACTTT
*
14666034 CTTCGATCTACTTCGCCACCAGTATGG
196 CTTCAATCTACTTCGCCACCAGTATGG
* * *
14666061 GAAGACAAGATCTATTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTAATTTT-T
1 GAAGACAAGATCTGTTTTCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCT-GTTTTCT
* ***
14666125 TCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTACT
65 TCGATCTACTTCA-CGCCAGTACATGAAGACAAGATCTACT
14666166 GCTACTCCAC
Statistics
Matches: 296, Mismatches: 29, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
222 239 0.81
223 57 0.19
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (222 bp):
GAAGACAAGATCTGTTTTCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTT
CGATCTACTTCACGCCAGTACATGAAGACAAGATCTACTTTCTTCGATCTACTTCGCCACCAGTA
TGGGAAGACAAGATCTACTATCTTTGATCTACTTCACACCAGTACATGAAGACAAGATATACTTT
CTTCAATCTACTTCGCCACCAGTATGG
Found at i:14666163 original size:89 final size:89
Alignment explanation
Indices: 14665611--14666162 Score: 590
Period size: 89 Copynumber: 6.2 Consensus size: 89
14665601 AAGACAAGAT
* * ** * *
14665611 TACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGATAAGATCTGT
1 TACAGGAAGACAAGATCTGTTTTCTTCGATCTACTTCGACACCAGTACAGGAAGACAAGATCTAT
* *
14665676 TTTCTTTGATCTACTTCACGCCAG
66 TTTCTTCGATCTACTTCACACCAG
* * **
14665700 TACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTAT
1 TACAGGAAGACAAGATCTGTTTTCTTCGATCTACTTCGACACCAGTACAGGAAGACAAGATCTAT
*
14665765 TTTCTTTGATCTACTTCACACCAG
66 TTTCTTCGATCTACTTCACACCAG
* * * * ** *
14665789 TACATGAAGACAAGATCTATTTTCTTCAATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGT
1 TACAGGAAGACAAGATCTGTTTTCTTCGATCTACTTCGACACCAGTACAGGAAGACAAGATCTAT
* *
14665854 TTTCTTTGATCTACTTCACGCCAG
66 TTTCTTCGATCTACTTCACACCAG
* * * * *
14665878 TACATGAAGACAAGATCTGTTTTCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTAC
1 TACAGGAAGACAAGATCTGTTTTCTTCGATCTACTTCGACACCAGTACAGGAAGACAAGATCTAT
* *
14665942 TTTCTTCGATCTATTTCGCCACCAG
66 TTTCTTCGATCTACTTC-ACACCAG
** * * * * * * * **
14665967 TATGGGAAGACAAGATCTGCTATCTTTGATCTACTTC-ACGCCAGTACATGAAGACAGGATATGC
1 TACAGGAAGACAAGATCTGTTTTCTTCGATCTACTTCGACACCAGTACAGGAAGACAAGATCTAT
*
14666031 TTTCTTCGATCTACTTCGCCACCAG
66 TTTCTTCGATCTACTTC-ACACCAG
** * * * * *
14666056 TATGGGAAGACAAGATCTATTATCTTTGATCTACTTC-ACGCCAGTACATGAAGACAAGATCTAA
1 TACAGGAAGACAAGATCTGTTTTCTTCGATCTACTTCGACACCAGTACAGGAAGACAAGATCT-A
14666120 TTTT-TTCGATCTACTTCACCACCAG
65 TTTTCTTCGATCTACTTCA-CACCAG
**
14666145 TATGGGAAGACAAGATCT
1 TACAGGAAGACAAGATCT
14666163 ACTGCTACTC
Statistics
Matches: 421, Mismatches: 39, Indels: 6
0.90 0.08 0.01
Matches are distributed among these distances:
88 34 0.08
89 384 0.91
90 3 0.01
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (89 bp):
TACAGGAAGACAAGATCTGTTTTCTTCGATCTACTTCGACACCAGTACAGGAAGACAAGATCTAT
TTTCTTCGATCTACTTCACACCAG
Found at i:14667451 original size:8 final size:7
Alignment explanation
Indices: 14667416--14667448 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
14667406 CTATTTTTAC
14667416 TTTTTCA
1 TTTTTCA
14667423 TTTTTCA
1 TTTTTCA
14667430 -TTTTCA
1 TTTTTCA
14667436 TCTTTTCA
1 T-TTTTCA
14667444 TTTTT
1 TTTTT
14667449 TCACATCACT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 6 0.25
7 11 0.46
8 7 0.29
ACGTcount: A:0.12, C:0.15, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTTTCA
Found at i:14668433 original size:20 final size:21
Alignment explanation
Indices: 14668388--14668430 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
14668378 TGGTCTGGCA
14668388 GGAAAAAAAATCCAAAAGAAT
1 GGAAAAAAAATCCAAAAGAAT
*
14668409 GGAAAAAAAGT-CATAAAGAAT
1 GGAAAAAAAATCCA-AAAGAAT
14668430 G
1 G
14668431 AAAGAACATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 2 0.10
21 18 0.90
ACGTcount: A:0.63, C:0.07, G:0.19, T:0.12
Consensus pattern (21 bp):
GGAAAAAAAATCCAAAAGAAT
Found at i:14670821 original size:17 final size:17
Alignment explanation
Indices: 14670799--14670834 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
14670789 CTCTATGATG
*
14670799 AAATGTCATGCAGTCAA
1 AAATGTCATGCAGCCAA
14670816 AAATGTCATGCAGCCAA
1 AAATGTCATGCAGCCAA
14670833 AA
1 AA
14670835 CAAAACACAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.44, C:0.19, G:0.17, T:0.19
Consensus pattern (17 bp):
AAATGTCATGCAGCCAA
Found at i:14672447 original size:13 final size:12
Alignment explanation
Indices: 14672423--14672452 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
14672413 GAAAAGAGCA
14672423 AAATATATATAT
1 AAATATATATAT
14672435 AAATATAATATAT
1 AAATAT-ATATAT
14672448 AAATA
1 AAATA
14672453 AACTATGGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.35
13 11 0.65
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (12 bp):
AAATATATATAT
Found at i:14672699 original size:3 final size:3
Alignment explanation
Indices: 14672684--14672733 Score: 59
Period size: 3 Copynumber: 17.3 Consensus size: 3
14672674 GTAAGTAATG
* **
14672684 TAA TAA TAC TAA TAA TGG T-A TAA TAA TAA TAA TAA TAA TAA TAA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14672730 TAA T
1 TAA T
14672734 TGAAAAAAAC
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
2 3 0.08
3 37 0.93
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:14672731 original size:23 final size:23
Alignment explanation
Indices: 14672684--14672733 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
14672674 GTAAGTAATG
* ** *
14672684 TAATAATACTAATAATGGTATAA
1 TAATAATAATAATAATAATAAAA
14672707 TAATAATAATAATAATAATAAAA
1 TAATAATAATAATAATAATAAAA
14672730 TAAT
1 TAAT
14672734 TGAAAAAAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (23 bp):
TAATAATAATAATAATAATAAAA
Found at i:14675137 original size:14 final size:14
Alignment explanation
Indices: 14675118--14675147 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
14675108 ATTACCTATC
14675118 TTTTTGAAATAATA
1 TTTTTGAAATAATA
*
14675132 TTTTTGATATAATA
1 TTTTTGAAATAATA
14675146 TT
1 TT
14675148 ATTTATGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.57
Consensus pattern (14 bp):
TTTTTGAAATAATA
Found at i:14680251 original size:42 final size:41
Alignment explanation
Indices: 14680211--14680419 Score: 285
Period size: 42 Copynumber: 5.0 Consensus size: 41
14680201 CAGCGTTTAC
* *
14680211 AAAAAAACGCCGCTAAA-AGTCATGCTCTTTAGCGGCGTTTA
1 AAAAAAACGCCGCTAAAGA-TCATGTTCTTTAGCGGCGCTTA
* * *
14680252 ATAAAAAACGCCACTAAAGATCATGTTCTTTAGTGGTGCTTAA
1 A-AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT-A
*
14680295 AAAAAAGACGCAGCTAAAGATCATGTTCTTTAGCGGCGCTTA
1 AAAAAA-ACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTA
* *
14680337 GAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGACACTTA
1 -AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTA
14680379 AATAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT
1 AA-AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT
14680420 TCATCACAAG
Statistics
Matches: 148, Mismatches: 14, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
41 3 0.02
42 106 0.72
43 39 0.26
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (41 bp):
AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTA
Found at i:14680319 original size:85 final size:84
Alignment explanation
Indices: 14680211--14680419 Score: 296
Period size: 85 Copynumber: 2.5 Consensus size: 84
14680201 CAGCGTTTAC
* *
14680211 AAAAAAACGCCGCTAAA-AGTCATGCTCTTTAGCGGCGTTTA-ATAAAAAACGCCACTAAAGATC
1 AAAAAAACGCCGCTAAAGA-TCATGTTCTTTAGCGGCGCTTAGA-AAAAAACGCCACTAAAGATC
* ***
14680274 ATGTTCTTTAGTGGTGCTTAA
64 ATGTTCTTTAGCGACACTTAA
* *
14680295 AAAAAAGACGCAGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGATCA
1 AAAAAA-ACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCACTAAAGATCA
14680360 TGTTCTTTAGCGACACTTAA
65 TGTTCTTTAGCGACACTTAA
*
14680380 ATAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT
14680420 TCATCACAAG
Statistics
Matches: 112, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
84 39 0.35
85 71 0.63
86 2 0.02
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (84 bp):
AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCACTAAAGATCAT
GTTCTTTAGCGACACTTAA
Found at i:14680448 original size:127 final size:127
Alignment explanation
Indices: 14680211--14680481 Score: 309
Period size: 127 Copynumber: 2.1 Consensus size: 127
14680201 CAGCGTTTAC
* * *
14680211 AAAAAAACGCCGCTAAAAGTCATGCTCTTTAGCGGCGTTTAATAAAAAACGCCACTAAAGATCAT
1 AAAAAAACGCCGCTAAAAGTCATGCTCTTTAGCGACCTTAAATAAAAAACGCCACTAAAGATCAT
* * * *
14680276 GTTCTTTAGTGGTGCTTAAAAAAAAGACGCAGCTAAAGATCATGTTCTTTAGCGGCGCTTAG
66 GTTCTTTAGCGGCGCTTAAAAAAAAGACGCAGCAAAAGATAATGTTCTTTAGCGGCGCTTAG
* *
14680338 AAAAAAACGCCGCT-AAAGATCATGTTCTTTAGCGACACTTAAAT-AAAAACGCCGCTAAAGATC
1 AAAAAAACGCCGCTAAAAG-TCATGCTCTTTAGCGAC-CTTAAATAAAAAACGCCACTAAAGATC
* ** *
14680401 ATGTTCTTTAGCGGCGCTTTCATCACAAGCAC-C-GCGAAAAG-TAATGTTCTTTAGCGGCGCTT
64 ATGTTCTTTAGCGGCGC-TTAAAAAAAAG-ACGCAGC-AAAAGATAATGTTCTTTAGCGGCGCTT
**
14680463 TT
126 AG
*
14680465 ATAAAAAACGCCACTAA
1 A-AAAAAACGCCGCTAA
14680482 TTTTGGGATT
Statistics
Matches: 121, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
126 4 0.03
127 85 0.70
128 29 0.24
129 3 0.02
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.25
Consensus pattern (127 bp):
AAAAAAACGCCGCTAAAAGTCATGCTCTTTAGCGACCTTAAATAAAAAACGCCACTAAAGATCAT
GTTCTTTAGCGGCGCTTAAAAAAAAGACGCAGCAAAAGATAATGTTCTTTAGCGGCGCTTAG
Found at i:14680917 original size:21 final size:21
Alignment explanation
Indices: 14680864--14680932 Score: 93
Period size: 21 Copynumber: 3.3 Consensus size: 21
14680854 GCTTCTCTCG
*
14680864 CTGCTTCTCGCGCTGCAGCCT
1 CTGCTTCTCTCGCTGCAGCCT
*
14680885 CTACTTCTCTCGCTGCAGCCT
1 CTGCTTCTCTCGCTGCAGCCT
* * *
14680906 CTGCTTCCCTCGTTGCCGCCT
1 CTGCTTCTCTCGCTGCAGCCT
14680927 CTGCTT
1 CTGCTT
14680933 TAAGTTGTAG
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.04, C:0.43, G:0.19, T:0.33
Consensus pattern (21 bp):
CTGCTTCTCTCGCTGCAGCCT
Found at i:14683763 original size:16 final size:16
Alignment explanation
Indices: 14683742--14683854 Score: 78
Period size: 16 Copynumber: 7.3 Consensus size: 16
14683732 TGATATATAT
*
14683742 TTATGTATTAAGTAAA
1 TTATGTATTAAGTAAG
** *
14683758 TTATGTAAGTTGTGTACG
1 TTATGT-A-TTAAGTAAG
*
14683776 TGTATGTATTATGTAAG
1 T-TATGTATTAAGTAAG
14683793 TTATGTATTAAGTAAG
1 TTATGTATTAAGTAAG
*
14683809 ----CTA-T--GTAAG
1 TTATGTATTAAGTAAG
* *
14683818 TTGTGTATTATGTAAG
1 TTATGTATTAAGTAAG
14683834 TTATGTATTAAGTAAG
1 TTATGTATTAAGTAAG
14683850 TTATG
1 TTATG
14683855 CCAGTTGTGC
Statistics
Matches: 76, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
9 5 0.07
11 1 0.01
12 2 0.03
13 2 0.03
14 1 0.01
16 44 0.58
17 9 0.12
18 7 0.09
19 5 0.07
ACGTcount: A:0.32, C:0.02, G:0.21, T:0.45
Consensus pattern (16 bp):
TTATGTATTAAGTAAG
Found at i:14683798 original size:9 final size:9
Alignment explanation
Indices: 14683753--14684749 Score: 344
Period size: 9 Copynumber: 111.8 Consensus size: 9
14683743 TATGTATTAA
*
14683753 GTAAATTAT
1 GTAAGTTAT
*
14683762 GTAAGTTGT
1 GTAAGTTAT
*
14683771 GTACGTGTAT
1 GTAAGT-TAT
14683781 GT-A-TTAT
1 GTAAGTTAT
14683788 GTAAGTTAT
1 GTAAGTTAT
*
14683797 GT-A-TTAA
1 GTAAGTTAT
*
14683804 GTAAGCTAT
1 GTAAGTTAT
*
14683813 GTAAGTTGT
1 GTAAGTTAT
14683822 GT-A-TTAT
1 GTAAGTTAT
14683829 GTAAGTTAT
1 GTAAGTTAT
*
14683838 GT-A-TTAA
1 GTAAGTTAT
14683845 GTAAGTTAT
1 GTAAGTTAT
** *
14683854 GCCAGTTGT
1 GTAAGTTAT
*
14683863 G-CA-TTAT
1 GTAAGTTAT
14683870 GTAAGTTAT
1 GTAAGTTAT
14683879 GTAAGTTAT
1 GTAAGTTAT
** *
14683888 CAAAGTAAT
1 GTAAGTTAT
*
14683897 GTATGTTAT
1 GTAAGTTAT
14683906 GTAAG-T-T
1 GTAAGTTAT
14683913 GTAAGTTAT
1 GTAAGTTAT
*
14683922 -TATGTATTAT
1 GTAAG--TTAT
*
14683932 GTAAGTCAT
1 GTAAGTTAT
*
14683941 ATAAGTTAT
1 GTAAGTTAT
14683950 GTAAGTTAAAT
1 GTAAGTT--AT
14683961 GT-A-TTAT
1 GTAAGTTAT
*
14683968 GTAGGTTAT
1 GTAAGTTAT
*
14683977 GTAAGTTGT
1 GTAAGTTAT
* *
14683986 GTAGGATAT
1 GTAAGTTAT
*
14683995 TTAAGTTAT
1 GTAAGTTAT
*
14684004 GTAAGTTTT
1 GTAAGTTAT
14684013 GT-A-TTAT
1 GTAAGTTAT
14684020 GTAAGTTAT
1 GTAAGTTAT
14684029 GTAAGTTAT
1 GTAAGTTAT
** *
14684038 CAAAGTAAT
1 GTAAGTTAT
*
14684047 GTATGTTAT
1 GTAAGTTAT
14684056 GTAAG-T-T
1 GTAAGTTAT
14684063 GTAAGTTAT
1 GTAAGTTAT
*
14684072 -TATGTATTAT
1 GTAAG--TTAT
14684082 GTAAGTTAT
1 GTAAGTTAT
14684091 GTAAGTTAT
1 GTAAGTTAT
** *
14684100 CAAAGTAAT
1 GTAAGTTAT
*
14684109 GTATGTTAT
1 GTAAGTTAT
14684118 GTAAG-T-T
1 GTAAGTTAT
14684125 GTAAGTTAT
1 GTAAGTTAT
*
14684134 -TATGTATTAT
1 GTAAG--TTAT
14684144 GTAAGTTAT
1 GTAAGTTAT
14684153 GTAAGTTAT
1 GTAAGTTAT
14684162 GTAAGTTAAAT
1 GTAAGTT--AT
*
14684173 GTAAGTTGT
1 GTAAGTTAT
*
14684182 GTAAGATAT
1 GTAAGTTAT
*
14684191 TTAAGTTAT
1 GTAAGTTAT
*
14684200 GTAAGTTTT
1 GTAAGTTAT
14684209 GT-A-TTAT
1 GTAAGTTAT
14684216 GTAAGTTAT
1 GTAAGTTAT
* *
14684225 GTATGCTAT
1 GTAAGTTAT
14684234 GT-A-TTAT
1 GTAAGTTAT
14684241 GTAAGTTGTTAT
1 GTAA---GTTAT
* *
14684253 GTTA-TTAC
1 GTAAGTTAT
*
14684261 ATAAGTTAT
1 GTAAGTTAT
*
14684270 GCAAGTTTATAT
1 GTAAG--T-TAT
* *
14684282 ATAAGCTTGT
1 GTAAG-TTAT
*
14684292 AGATAACTTAT
1 -G-TAAGTTAT
14684303 GTAAGTTAATAT
1 GTAAG-T--TAT
*
14684315 GTAAGTAAT
1 GTAAGTTAT
*
14684324 AT-A-TTAT
1 GTAAGTTAT
14684331 GTAAGTTTAT
1 GTAAG-TTAT
* *
14684341 ATAAATT-T
1 GTAAGTTAT
*
14684349 -T---TTTT
1 GTAAGTTAT
*
14684354 ATAAGTTAT
1 GTAAGTTAT
*
14684363 GT-A-TTAC
1 GTAAGTTAT
14684370 GTAAGTTA-
1 GTAAGTTAT
* *
14684378 -AAATTTAT
1 GTAAGTTAT
14684386 GT-A-TTAT
1 GTAAGTTAT
14684393 GTAAGTTTACAT
1 GTAAG-TT--AT
*
14684405 ATAAGTTTAT
1 GTAAG-TTAT
14684415 GTGATAGTTAT
1 GT-A-AGTTAT
14684426 GTAAGTTTAT
1 GTAAG-TTAT
* *
14684436 ATAA-ATATT
1 GTAAGTTA-T
*
14684445 AATAAGTTAT
1 -GTAAGTTAT
*
14684455 GTAAGTTCTT
1 GTAAGTT-AT
*
14684465 GTACA-TACAAAT
1 GTA-AGT---TAT
* **
14684477 TTTGGTTAT
1 GTAAGTTAT
*
14684486 GTAAGATAT
1 GTAAGTTAT
*
14684495 GT-A-TGAT
1 GTAAGTTAT
14684502 GTAAGTATAT
1 GTAAGT-TAT
* **
14684512 -CACTTTTAT
1 GTA-AGTTAT
**
14684521 GTATCTTAT
1 GTAAGTTAT
* *
14684530 -TTA-TAAT
1 GTAAGTTAT
*
14684537 -T-ATTTAT
1 GTAAGTTAT
14684544 GTAAGTTAT
1 GTAAGTTAT
14684553 GTAAGTTAT
1 GTAAGTTAT
* *
14684562 TTAATTTAT
1 GTAAGTTAT
*
14684571 ATAAGTTATTT
1 GTAAGTTA--T
* *
14684582 AGAAAAAATTAT
1 -G--TAAGTTAT
14684594 GTAAGTTAT
1 GTAAGTTAT
14684603 GTACTA-TTAT
1 GTA--AGTTAT
* *
14684613 GTAAATAAT
1 GTAAGTTAT
14684622 GTAAGTTA-
1 GTAAGTTAT
*
14684630 GGAAGGTTAT
1 GTAA-GTTAT
14684640 GT-A-TTAT
1 GTAAGTTAT
14684647 GTAAGTTAT
1 GTAAGTTAT
*
14684656 TTAAGTTAT
1 GTAAGTTAT
14684665 GTAAGTTAT
1 GTAAGTTAT
14684674 GTAAGTTAT
1 GTAAGTTAT
* *
14684683 TTAATTTAT
1 GTAAGTTAT
14684692 GTAAGTTAT
1 GTAAGTTAT
14684701 GTAAGTTAT
1 GTAAGTTAT
* *
14684710 GTAGGCTAT
1 GTAAGTTAT
14684719 GT-A-TTAT
1 GTAAGTTAT
*
14684726 GTTA-TTAT
1 GTAAGTTAT
*
14684734 ATAAGTTAT
1 GTAAGTTAT
*
14684743 GCAAGTT
1 GTAAGTT
14684750 TATATATTGT
Statistics
Matches: 726, Mismatches: 161, Indels: 202
0.67 0.15 0.19
Matches are distributed among these distances:
4 2 0.00
5 1 0.00
6 2 0.00
7 104 0.14
8 61 0.08
9 408 0.56
10 63 0.09
11 41 0.06
12 39 0.05
14 5 0.01
ACGTcount: A:0.34, C:0.03, G:0.18, T:0.46
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:14683832 original size:41 final size:41
Alignment explanation
Indices: 14683780--14683881 Score: 168
Period size: 41 Copynumber: 2.5 Consensus size: 41
14683770 TGTACGTGTA
*
14683780 TGTATTATGTAAGTTATGTATTAAGTAAGCTATGTAAGTTG
1 TGTATTATGTAAGTTATGTATTAAGTAAGCTATGCAAGTTG
* *
14683821 TGTATTATGTAAGTTATGTATTAAGTAAGTTATGCCAGTTG
1 TGTATTATGTAAGTTATGTATTAAGTAAGCTATGCAAGTTG
*
14683862 TGCATTATGTAAGTTATGTA
1 TGTATTATGTAAGTTATGTA
14683882 AGTTATCAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 57 1.00
ACGTcount: A:0.30, C:0.04, G:0.22, T:0.44
Consensus pattern (41 bp):
TGTATTATGTAAGTTATGTATTAAGTAAGCTATGCAAGTTG
Found at i:14684091 original size:62 final size:62
Alignment explanation
Indices: 14684012--14684161 Score: 300
Period size: 62 Copynumber: 2.4 Consensus size: 62
14684002 ATGTAAGTTT
14684012 TGTATTATGTAAGTTATGTAAGTTATCAAAGTAATGTATGTTATGTAAGTTGTAAGTTATTA
1 TGTATTATGTAAGTTATGTAAGTTATCAAAGTAATGTATGTTATGTAAGTTGTAAGTTATTA
14684074 TGTATTATGTAAGTTATGTAAGTTATCAAAGTAATGTATGTTATGTAAGTTGTAAGTTATTA
1 TGTATTATGTAAGTTATGTAAGTTATCAAAGTAATGTATGTTATGTAAGTTGTAAGTTATTA
14684136 TGTATTATGTAAGTTATGTAAGTTAT
1 TGTATTATGTAAGTTATGTAAGTTAT
14684162 GTAAGTTAAA
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 88 1.00
ACGTcount: A:0.33, C:0.01, G:0.19, T:0.46
Consensus pattern (62 bp):
TGTATTATGTAAGTTATGTAAGTTATCAAAGTAATGTATGTTATGTAAGTTGTAAGTTATTA
Found at i:14684118 original size:150 final size:149
Alignment explanation
Indices: 14683834--14684164 Score: 454
Period size: 150 Copynumber: 2.2 Consensus size: 149
14683824 ATTATGTAAG
* * ** * *
14683834 TTATGTATTAAGTAAGTTATGCCAGTTGTGCATTATGTAAGTTATGTAAGTTATCAAAGTAATGT
1 TTATGGATTATGTAAGTTATGTAAGTTATGTATTATGTAAGTTATGTAAGTTATCAAAGTAATGT
**
14683899 ATGTTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTCATATAAGTTATGTAAGTTAAATGTA
66 ATGTTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTCATATAAGTTATCAAAGTTAAATGTA
* *
14683964 TTATGTAGGTTATGTAAGTTG
131 TTATGTAAG-T-TGTAAGTTA
* *
14683985 TGTA-GGA-TATTTAAGTTATGTAAGTTTTGTATTATGTAAGTTATGTAAGTTATCAAAGTAATG
1 T-TATGGATTATGTAAGTTATGTAAGTTATGTATTATGTAAGTTATGTAAGTTATCAAAGTAATG
* *
14684048 TATGTTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTATGTAAGTTATCAAAG-T-AATGT
65 TATGTTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTCATATAAGTTATCAAAGTTAAATGT
14684111 ATGTTATGTAAGTTGTAAGTTA
130 A--TTATGTAAGTTGTAAGTTA
*
14684133 TTATGTATTATGTAAGTTATGTAAGTTATGTA
1 TTATGGATTATGTAAGTTATGTAAGTTATGTA
14684165 AGTTAAATGT
Statistics
Matches: 159, Mismatches: 16, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
147 2 0.01
148 17 0.11
149 24 0.15
150 111 0.70
151 3 0.02
152 2 0.01
ACGTcount: A:0.33, C:0.02, G:0.20, T:0.45
Consensus pattern (149 bp):
TTATGGATTATGTAAGTTATGTAAGTTATGTATTATGTAAGTTATGTAAGTTATCAAAGTAATGT
ATGTTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTCATATAAGTTATCAAAGTTAAATGTA
TTATGTAAGTTGTAAGTTA
Found at i:14684195 original size:29 final size:27
Alignment explanation
Indices: 14683804--14684247 Score: 222
Period size: 25 Copynumber: 16.9 Consensus size: 27
14683794 TATGTATTAA
* *
14683804 GTAAGCTATGTAAGTTGTGT-A-TTAT
1 GTAAGATATGTAAGTTATGTAAGTTAT
* *
14683829 GTAAGTTATGT-A-TTAAGTAAGTTAT
1 GTAAGATATGTAAGTTATGTAAGTTAT
** *
14683854 GCCAG-T-TGTGCA-TTATGTAAGTTAT
1 GTAAGATATGT-AAGTTATGTAAGTTAT
* ** * *
14683879 GTAAGTTATCAAAGTAATGTATGTTAT
1 GTAAGATATGTAAGTTATGTAAGTTAT
*
14683906 GTAAG-T-TGTAAGTTAT-TATGTATTAT
1 GTAAGATATGTAAGTTATGTAAG--TTAT
*
14683932 GTAAG-TCATATAAGTTATGTAAGTTAAAT
1 GTAAGAT-ATGTAAGTTATGTAAGTT--AT
* * *
14683961 GT-A-TTATGTAGGTTATGTAAGTTGT
1 GTAAGATATGTAAGTTATGTAAGTTAT
* * *
14683986 GTAGGATATTTAAGTTATGTAAGTTTT
1 GTAAGATATGTAAGTTATGTAAGTTAT
*
14684013 GT-A-TTATGTAAGTTATGTAAGTTAT
1 GTAAGATATGTAAGTTATGTAAGTTAT
** *
14684038 CAAAG-TAATGTATGTTATGTAAG-T-T
1 GTAAGAT-ATGTAAGTTATGTAAGTTAT
14684063 GTAAGTTATTATGT-A-TTATGTAAGTTAT
1 GTAAG--A-TATGTAAGTTATGTAAGTTAT
* ** * *
14684091 GTAAGTTATCAAAGTAATGTATGTTAT
1 GTAAGATATGTAAGTTATGTAAGTTAT
*
14684118 GTAAG-T-TGTAAGTTAT-TATGTATTAT
1 GTAAGATATGTAAGTTATGTAAG--TTAT
*
14684144 GTAAGTTATGTAAGTTATGTAAGTTAAAT
1 GTAAGATATGTAAGTTATGTAAGTT--AT
* * * *
14684173 GTAAGTTGTGTAAGATATTTAAGTTAT
1 GTAAGATATGTAAGTTATGTAAGTTAT
* *
14684200 GTAAGTTTTGT-A-TTATGTAAGTTAT
1 GTAAGATATGTAAGTTATGTAAGTTAT
* *
14684225 GTATGCTATGT-A-TTATGTAAGTT
1 GTAAGATATGTAAGTTATGTAAGTT
14684248 GTTATGTTAT
Statistics
Matches: 330, Mismatches: 54, Indels: 70
0.73 0.12 0.15
Matches are distributed among these distances:
23 7 0.02
24 11 0.03
25 107 0.32
26 37 0.11
27 102 0.31
28 31 0.09
29 35 0.11
ACGTcount: A:0.32, C:0.02, G:0.21, T:0.45
Consensus pattern (27 bp):
GTAAGATATGTAAGTTATGTAAGTTAT
Found at i:14684218 original size:212 final size:211
Alignment explanation
Indices: 14683865--14684247 Score: 594
Period size: 212 Copynumber: 1.8 Consensus size: 211
14683855 CCAGTTGTGC
14683865 ATTATGTAAGTTATGTAAGTTATCAAAGTAATGTATGTTATGTAAGTTGTAAGTTATTATGTATT
1 ATTATGTAAGTTATGTAAGTTATCAAAGTAATGTATGTTATGTAAGTTGTAAGTTATTATGTATT
* * * *
14683930 ATGTAAGTCATATAAGTTATGTAAGTTAAATGTATTATGTAGGTTATGTAAGTTGTGTAGGATAT
66 ATGTAAGTCATATAAGTTATGTAAGTTAAATGTATTATGTAAGATATGTAAGTTATGTAAGATAT
*
14683995 TTAAGTTATGTAAGTTTTGTAT-TATGTAAGTTATGTAAGTTATCAAAGTAATGTATGTTATGTA
131 TTAAGTTATGTAAGTTATGTATCTATGT-A-TTATGTAAGTTATCAAAGTAATGTATGTTATGTA
14684059 AGTTGTAAGTTATTATGT
194 AGTTGTAAGTTATTATGT
14684077 ATTATGTAAGTTATGTAAGTTATCAAAGTAATGTATGTTATGTAAGTTGTAAGTTATTATGTATT
1 ATTATGTAAGTTATGTAAGTTATCAAAGTAATGTATGTTATGTAAGTTGTAAGTTATTATGTATT
* * * *
14684142 ATGTAAGTTATGTAAGTTATGTAAGTTAAATGTAAGTTGTGTAAGATATTTAAGTTATGTAAG-T
66 ATGTAAGTCATATAAGTTATGTAAGTTAAATGT-A-TTATGTAAGATATGTAAGTTATGTAAGAT
*
14684206 -TTTGTA-TTATGTAAGTTATGTATGCTATGTATTATGTAAGTT
129 ATTT-AAGTTATGTAAGTTATGTAT-CTATGTATTATGTAAGTT
14684248 GTTATGTTAT
Statistics
Matches: 156, Mismatches: 10, Indels: 10
0.89 0.06 0.06
Matches are distributed among these distances:
212 126 0.81
213 4 0.03
214 26 0.17
ACGTcount: A:0.33, C:0.01, G:0.20, T:0.46
Consensus pattern (211 bp):
ATTATGTAAGTTATGTAAGTTATCAAAGTAATGTATGTTATGTAAGTTGTAAGTTATTATGTATT
ATGTAAGTCATATAAGTTATGTAAGTTAAATGTATTATGTAAGATATGTAAGTTATGTAAGATAT
TTAAGTTATGTAAGTTATGTATCTATGTATTATGTAAGTTATCAAAGTAATGTATGTTATGTAAG
TTGTAAGTTATTATGT
Found at i:14684552 original size:23 final size:23
Alignment explanation
Indices: 14684516--14684602 Score: 57
Period size: 23 Copynumber: 3.6 Consensus size: 23
14684506 GTATATCACT
**
14684516 TTTATGTATCTTATTTATAATTA
1 TTTATGTAAGTTATTTATAATTA
* *
14684539 TTTATGTAAGTTATGTAAGTTATTTAA
1 TTTATGTAAGTTAT-TTA--TAATT-A
* * **
14684566 TTTATATAAGTTATTTAGAAAAA
1 TTTATGTAAGTTATTTATAATTA
*
14684589 ATTATGTAAGTTAT
1 TTTATGTAAGTTAT
14684603 GTACTATTAT
Statistics
Matches: 48, Mismatches: 12, Indels: 8
0.71 0.18 0.12
Matches are distributed among these distances:
23 25 0.52
24 3 0.06
26 6 0.12
27 14 0.29
ACGTcount: A:0.37, C:0.01, G:0.10, T:0.52
Consensus pattern (23 bp):
TTTATGTAAGTTATTTATAATTA
Found at i:14684772 original size:33 final size:34
Alignment explanation
Indices: 14684730--14684802 Score: 96
Period size: 35 Copynumber: 2.1 Consensus size: 34
14684720 TATTATGTTA
*
14684730 TTATATAAGTTATG-CAAGTT-TATATATTGTATG
1 TTATTTAAGTTATGACAAGTTAT-TATATTGTATG
*
14684763 TTATTTAAGTTATGTATAAGTTATTATATTGTATG
1 TTATTTAAGTTATG-ACAAGTTATTATATTGTATG
14684798 TTATT
1 TTATT
14684803 ATATAAGTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
33 13 0.37
35 21 0.60
36 1 0.03
ACGTcount: A:0.32, C:0.01, G:0.14, T:0.53
Consensus pattern (34 bp):
TTATTTAAGTTATGACAAGTTATTATATTGTATG
Found at i:14684812 original size:12 final size:12
Alignment explanation
Indices: 14684763--14684819 Score: 53
Period size: 12 Copynumber: 4.6 Consensus size: 12
14684753 ATATTGTATG
*
14684763 TTATTTAAGTTA
1 TTATATAAGTTA
*
14684775 -TGTATAAGTTA
1 TTATATAAGTTA
*
14684786 TTATATTGTATGTTA
1 TTATA---TAAGTTA
14684801 TTATATAAGTTA
1 TTATATAAGTTA
14684813 TTATATA
1 TTATATA
14684820 TTATTAATAT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
11 9 0.25
12 16 0.44
15 11 0.31
ACGTcount: A:0.35, C:0.00, G:0.11, T:0.54
Consensus pattern (12 bp):
TTATATAAGTTA
Found at i:14684925 original size:17 final size:16
Alignment explanation
Indices: 14684884--14684927 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
14684874 TAAATCTTGA
* *
14684884 AAAAATTATAGATTTT
1 AAAAATTATATATATT
14684900 AAAAA-TATATATATT
1 AAAAATTATATATATT
14684915 AAAAATGTATATA
1 AAAAAT-TATATA
14684928 AATATTTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 13 0.54
16 5 0.21
17 6 0.25
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.39
Consensus pattern (16 bp):
AAAAATTATATATATT
Found at i:14685716 original size:7 final size:7
Alignment explanation
Indices: 14685704--14685742 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
14685694 AAAGCGGCCT
14685704 AAACCCC
1 AAACCCC
14685711 AAACCCC
1 AAACCCC
**
14685718 AAACCTT
1 AAACCCC
*
14685725 AAACCCT
1 AAACCCC
14685732 AAACCCC
1 AAACCCC
14685739 AAAC
1 AAAC
14685743 TATATACAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.46, C:0.46, G:0.00, T:0.08
Consensus pattern (7 bp):
AAACCCC
Found at i:14685729 original size:21 final size:21
Alignment explanation
Indices: 14685703--14685742 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
14685693 TAAAGCGGCC
14685703 TAAACCCCAAACCCCAAACCT
1 TAAACCCCAAACCCCAAACCT
*
14685724 TAAACCCTAAACCCCAAAC
1 TAAACCCCAAACCCCAAAC
14685743 TATATACAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.45, C:0.45, G:0.00, T:0.10
Consensus pattern (21 bp):
TAAACCCCAAACCCCAAACCT
Found at i:14685742 original size:14 final size:14
Alignment explanation
Indices: 14685701--14685742 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
14685691 ACTAAAGCGG
14685701 CCTAAACCCCAAAC
1 CCTAAACCCCAAAC
* **
14685715 CCCAAACCTTAAAC
1 CCTAAACCCCAAAC
14685729 CCTAAACCCCAAAC
1 CCTAAACCCCAAAC
14685743 TATATACAAT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.43, C:0.48, G:0.00, T:0.10
Consensus pattern (14 bp):
CCTAAACCCCAAAC
Found at i:14685827 original size:20 final size:21
Alignment explanation
Indices: 14685800--14685850 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
14685790 CCAAACTCTC
14685800 AAACCCTAAATCAAAAACACT
1 AAACCCTAAATCAAAAACACT
* ** *
14685821 AAA-CCTACATCGTAAACCCT
1 AAACCCTAAATCAAAAACACT
14685841 AAACCCTAAA
1 AAACCCTAAA
14685851 CTATAATCCA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
20 16 0.67
21 8 0.33
ACGTcount: A:0.51, C:0.31, G:0.02, T:0.16
Consensus pattern (21 bp):
AAACCCTAAATCAAAAACACT
Found at i:14687640 original size:115 final size:113
Alignment explanation
Indices: 14687425--14687868 Score: 590
Period size: 114 Copynumber: 3.9 Consensus size: 113
14687415 AATTATTTTA
* * * *
14687425 CGGCGCTTCATCAAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACGGCATCGTTGGGCTTAGG
1 CGGCGCTTCACCGAAAACGCCACTAAATCCCCGAATGCTCAGAAAACGGCATCGTTGGGCTTCGG
*
14687490 TTTTTTGCAGCGCTTCCAC-AAAAAACGCCGCTAAAGCCTTGAGCATTAG
66 TTTTTTGCGGCGCTT--ACTAAAAAACGCCGCTAAAGCCTTGAGCATTAG
*
14687539 CGGCGCTTCCACCGAAAACGCCACTAAATCCCCGAATGCTCAGAAAACGACATCGTTGGGCTTCG
1 CGGCGCTT-CACCGAAAACGCCACTAAATCCCCGAATGCTCAGAAAACGGCATCGTTGGGCTTCG
*
14687604 GTTTCTTTGCGGCGCTTACTAAAAAAAGCCGCTAAAGTCC-TGAGCATTAG
65 GTTT-TTTGCGGCGCTTACTAAAAAACGCCGCTAAAG-CCTTGAGCATTAG
* * * * * *
14687654 CGGCGCTTTACCGAAAACACCGCTAAATCCCCGAATGCTCAGAAAATGGCGTCGTTGGGCTTTGG
1 CGGCGCTTCACCGAAAACGCCACTAAATCCCCGAATGCTCAGAAAACGGCATCGTTGGGCTTCGG
* * *
14687719 TTTATTTGCGGCGCTTACTCAAAAACGCCGCTAAAGTCTTGAACATTAG
66 TTT-TTTGCGGCGCTTACTAAAAAACGCCGCTAAAGCCTTGAGCATTAG
* * *
14687768 CGGCGCTTCACCGAAAACGCTACTAAATCCCCAAAT-CTCAGCAAACGGCATCGTTGGGCTTCAG
1 CGGCGCTTCACCGAAAACGCCACTAAATCCCCGAATGCTCAGAAAACGGCATCGTTGGGCTTC-G
* * *
14687832 TTTTTTTGCGGCGCTT-CCACAAAATCGCCGCTAAAGC
65 GTTTTTTGCGGCGCTTACTA-AAAAACGCCGCTAAAGC
14687869 TCCGAATGGG
Statistics
Matches: 290, Mismatches: 33, Indels: 15
0.86 0.10 0.04
Matches are distributed among these distances:
112 1 0.00
113 50 0.17
114 137 0.47
115 89 0.31
116 13 0.04
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (113 bp):
CGGCGCTTCACCGAAAACGCCACTAAATCCCCGAATGCTCAGAAAACGGCATCGTTGGGCTTCGG
TTTTTTGCGGCGCTTACTAAAAAACGCCGCTAAAGCCTTGAGCATTAG
Found at i:14688958 original size:27 final size:27
Alignment explanation
Indices: 14688916--14689007 Score: 96
Period size: 27 Copynumber: 3.4 Consensus size: 27
14688906 TATGAATGGA
* *
14688916 AATTAGCACTTCGGTGCTCTCTATTCT
1 AATTAGCACTTTGGTGCTCTCTGTTCT
*
14688943 AATTAGCACTTTGGTGCTCGT-TGTTTT
1 AATTAGCACTTTGGTGCTC-TCTGTTCT
* * * *
14688970 GATTAGCATTTTGGTGCTTTCCGTTCT
1 AATTAGCACTTTGGTGCTCTCTGTTCT
*
14688997 AACTAGCACTT
1 AATTAGCACTT
14689008 CGAGGCTCTC
Statistics
Matches: 52, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
26 1 0.02
27 50 0.96
28 1 0.02
ACGTcount: A:0.17, C:0.21, G:0.18, T:0.43
Consensus pattern (27 bp):
AATTAGCACTTTGGTGCTCTCTGTTCT
Found at i:14700936 original size:134 final size:134
Alignment explanation
Indices: 14700753--14701022 Score: 504
Period size: 134 Copynumber: 2.0 Consensus size: 134
14700743 TTAGTTACCG
*
14700753 ATTAAGTTGCTAGATAGTGTTATCTCCAAAAGCAATCCAATCGGCAGCTCAATCCGACGATCTAC
1 ATTAAGTTGCTAGATAGTGTTATCTCCAAAAGCAATCCAATCGACAGCTCAATCCGACGATCTAC
14700818 AAGGAAGAAAAACCAAAATGAGGTAAGCTTGCTTAAACCTTAGTATGTCATGAATTCATTTAATT
66 AAGGAAGAAAAACCAAAATGAGGTAAGCTTGCTTAAACCTTAGTATGTCATGAATTCATTTAATT
14700883 GCCT
131 GCCT
* * *
14700887 ATTAAGTTGCTAGTTAGTGTTATCTCTAAAAGCAATCCAATCGACAGCTCGATCCGACGATCTAC
1 ATTAAGTTGCTAGATAGTGTTATCTCCAAAAGCAATCCAATCGACAGCTCAATCCGACGATCTAC
14700952 AAGGAAGAAAAACCAAAATGAGGTAAGCTTGCTTAAACCTTAGTATGTCATGAATTCATTTAATT
66 AAGGAAGAAAAACCAAAATGAGGTAAGCTTGCTTAAACCTTAGTATGTCATGAATTCATTTAATT
14701017 GCCT
131 GCCT
14701021 AT
1 AT
14701023 ACACATCACA
Statistics
Matches: 132, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
134 132 1.00
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.29
Consensus pattern (134 bp):
ATTAAGTTGCTAGATAGTGTTATCTCCAAAAGCAATCCAATCGACAGCTCAATCCGACGATCTAC
AAGGAAGAAAAACCAAAATGAGGTAAGCTTGCTTAAACCTTAGTATGTCATGAATTCATTTAATT
GCCT
Found at i:14701253 original size:40 final size:39
Alignment explanation
Indices: 14701201--14701321 Score: 118
Period size: 40 Copynumber: 3.0 Consensus size: 39
14701191 TTTTACATAT
* * *
14701201 CTATATCCATATAAACATTTCATAAAAGCAGTTCATATAA
1 CTATTTCCATATAACCATTTCATAAAACCA-TTCATATAA
* * * *
14701241 CTATTTCTATATAACCGA-TTCATAAAATCATTCCATGTAT
1 CTATTTCCATATAACC-ATTTCATAAAACCATT-CATATAA
**
14701281 CTATTTCCATATAACCATTTCATGTAACCATTTCATATAA
1 CTATTTCCATATAACCATTTCATAAAACCA-TTCATATAA
14701321 C
1 C
14701322 CTTTTTGTAT
Statistics
Matches: 65, Mismatches: 12, Indels: 8
0.76 0.14 0.09
Matches are distributed among these distances:
39 3 0.05
40 59 0.91
41 3 0.05
ACGTcount: A:0.38, C:0.21, G:0.04, T:0.37
Consensus pattern (39 bp):
CTATTTCCATATAACCATTTCATAAAACCATTCATATAA
Found at i:14701299 original size:27 final size:26
Alignment explanation
Indices: 14701232--14701322 Score: 76
Period size: 27 Copynumber: 3.4 Consensus size: 26
14701222 ATAAAAGCAG
* * *
14701232 TTCATATAACTATTTCTATATAACCGA-
1 TTCATATAACCA-TTCCATGTAACC-AT
* * * *
14701259 TTCATAAAATCATTCCATGTATCTAT
1 TTCATATAACCATTCCATGTAACCAT
*
14701285 TTCCATATAACCATTTCATGTAACCAT
1 TT-CATATAACCATTCCATGTAACCAT
14701312 TTCATATAACC
1 TTCATATAACC
14701323 TTTTTGTATA
Statistics
Matches: 50, Mismatches: 12, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
25 1 0.02
26 19 0.38
27 30 0.60
ACGTcount: A:0.35, C:0.22, G:0.03, T:0.40
Consensus pattern (26 bp):
TTCATATAACCATTCCATGTAACCAT
Found at i:14701310 original size:13 final size:13
Alignment explanation
Indices: 14701208--14701355 Score: 100
Period size: 13 Copynumber: 11.2 Consensus size: 13
14701198 TATCTATATC
*
14701208 CATATAAACATTT
1 CATATAACCATTT
* * *
14701221 CATAAAAGCAGTT
1 CATATAACCATTT
*
14701234 CATATAACTATTT
1 CATATAACCATTT
14701247 CTATATAACCGA-TT
1 C-ATATAACC-ATTT
* * *
14701261 CATAAAATCATTC
1 CATATAACCATTT
* * *
14701274 CATGTATCTATTT
1 CATATAACCATTT
14701287 CCATATAACCATTT
1 -CATATAACCATTT
*
14701301 CATGTAACCATTT
1 CATATAACCATTT
*
14701314 CATATAACCTTTT
1 CATATAACCATTT
**
14701327 TGTATAACCATTT
1 CATATAACCATTT
* * *
14701340 CTTATATCTATTT
1 CATATAACCATTT
14701353 CAT
1 CAT
14701356 TTTCTACATT
Statistics
Matches: 100, Mismatches: 31, Indels: 8
0.72 0.22 0.06
Matches are distributed among these distances:
12 1 0.01
13 78 0.78
14 20 0.20
15 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.04, T:0.41
Consensus pattern (13 bp):
CATATAACCATTT
Found at i:14702972 original size:30 final size:29
Alignment explanation
Indices: 14702916--14702973 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
14702906 AGCAAAAATT
14702916 ATCAAATCAAAATTTAATATAATACTATA
1 ATCAAATCAAAATTTAATATAATACTATA
*
14702945 ATCAACTCATAAATATTAATA-AATACTAT
1 ATCAAATCA-AAAT-TTAATATAATACTAT
14702974 TTACAAACTC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 8 0.31
30 12 0.46
31 6 0.23
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.34
Consensus pattern (29 bp):
ATCAAATCAAAATTTAATATAATACTATA
Found at i:14714526 original size:21 final size:21
Alignment explanation
Indices: 14714502--14714541 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
14714492 CGATACCAGA
14714502 TATAAAAATATCAATACTTAT
1 TATAAAAATATCAATACTTAT
*
14714523 TATAAAGATATCAATACTT
1 TATAAAAATATCAATACTT
14714542 TGTTCAAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.50, C:0.10, G:0.03, T:0.38
Consensus pattern (21 bp):
TATAAAAATATCAATACTTAT
Found at i:14714673 original size:18 final size:17
Alignment explanation
Indices: 14714646--14714681 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
14714636 TAATATCATG
*
14714646 ATTAACTAATGTTTGTTT
1 ATTAAATAATGTTT-TTT
14714664 ATTAAATAATGTTTTTT
1 ATTAAATAATGTTTTTT
14714681 A
1 A
14714682 ATTGTATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.33, C:0.03, G:0.08, T:0.56
Consensus pattern (17 bp):
ATTAAATAATGTTTTTT
Found at i:14720183 original size:80 final size:79
Alignment explanation
Indices: 14720099--14720270 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
14720089 GGACTAAGAT
*
14720099 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
14720163 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
14720179 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
14720244 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
14720258 CCGAAGGCATTTG
1 CCGAAGGCATTTG
14720271 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:14720250 original size:39 final size:39
Alignment explanation
Indices: 14720099--14720268 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 39
14720089 GGACTAAGAT
*
14720099 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
1 CCGAAGGCA-TTGTGCGAGATACTAAA-TCCGGGTTAAGTC
*
14720139 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGATACTAAATCCGGGTTAAGTC
* * *
14720179 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATT-GTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
14720219 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGATACTAAATCCGGGTTAAGTC
14720258 CCGAAGGCATT
1 CCGAAGGCATT
14720269 TGAACGAGGA
Statistics
Matches: 117, Mismatches: 10, Indels: 7
0.87 0.07 0.05
Matches are distributed among these distances:
39 38 0.32
40 75 0.64
41 4 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:14720288 original size:79 final size:80
Alignment explanation
Indices: 14720126--14720303 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
14720116 AGATACAAAT
* * * *
14720126 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
14720191 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
14720206 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
14720270 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
14720285 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
14720304 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:14721757 original size:21 final size:21
Alignment explanation
Indices: 14721718--14721757 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
14721708 AGACAAGCTT
*
14721718 TTTTATTAAGTTTTAATTATG
1 TTTTATTAAGTTTCAATTATG
* *
14721739 TTTTCTTAAGTTTCCATTA
1 TTTTATTAAGTTTCAATTA
14721758 AGTAAATAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.25, C:0.07, G:0.07, T:0.60
Consensus pattern (21 bp):
TTTTATTAAGTTTCAATTATG
Found at i:14727205 original size:21 final size:21
Alignment explanation
Indices: 14727166--14727205 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
14727156 AGGCAAACAT
*
14727166 TTTTATTAAGTTTTAATTATG
1 TTTTATTAAGTTTCAATTATG
* *
14727187 TTTTCTTAAGTTTCCATTA
1 TTTTATTAAGTTTCAATTA
14727206 AGTTAATAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.25, C:0.07, G:0.07, T:0.60
Consensus pattern (21 bp):
TTTTATTAAGTTTCAATTATG
Found at i:14732410 original size:41 final size:41
Alignment explanation
Indices: 14732365--14732812 Score: 488
Period size: 41 Copynumber: 11.0 Consensus size: 41
14732355 AATTTGAAGT
** * * **
14732365 TACCGAAGTGTAAACAGGGGCACATATGCGTTATTTAGGGG
1 TACCGAAGTACAAACAGGGGCACGTATGTGCAATTTAGGGG
* *
14732406 TACCGAAGTACAAATAGGGGCACGTATGTGCAATTCAGGGG
1 TACCGAAGTACAAACAGGGGCACGTATGTGCAATTTAGGGG
* *
14732447 TACCAAAGTACAAACA-GGGCTACGTATGTGTAATTTA-GGG
1 TACCGAAGTACAAACAGGGGC-ACGTATGTGCAATTTAGGGG
* * * *
14732487 TATCGAAGTATAAACAGGGCCACGTATGTGTAATTTAGGGG
1 TACCGAAGTACAAACAGGGGCACGTATGTGCAATTTAGGGG
* * * *
14732528 TACCGAAGTACAAAGAGGGGTATGTATGTGCAATTCAGGGG
1 TACCGAAGTACAAACAGGGGCACGTATGTGCAATTTAGGGG
* * *
14732569 TACCGAAGTACAAACAGGGGCATGTATGTGCAATTCAAGGG
1 TACCGAAGTACAAACAGGGGCACGTATGTGCAATTTAGGGG
* * *
14732610 -ATCGAAGTACAAATAGGGGCACATATGTGCAATTTAGGGG
1 TACCGAAGTACAAACAGGGGCACGTATGTGCAATTTAGGGG
* * * * *
14732650 TACCGAAGTAAAAATAGGGGTACATATGTGCAATTCAGGGG
1 TACCGAAGTACAAACAGGGGCACGTATGTGCAATTTAGGGG
* * * * *
14732691 TACCAAAGTACAAAAAAGGGCACGTATGTGCAATTCAGTGG
1 TACCGAAGTACAAACAGGGGCACGTATGTGCAATTTAGGGG
* ** ** *
14732732 TACCAAAGTACAAACAAAGGCACACATGTGCAATTAAGGGG
1 TACCGAAGTACAAACAGGGGCACGTATGTGCAATTTAGGGG
* *
14732773 TATCGAAGAACAAACAGGGGCACGTATGTGCAATTTAGGG
1 TACCGAAGTACAAACAGGGGCACGTATGTGCAATTTAGGG
14732813 TATAATTAAC
Statistics
Matches: 345, Mismatches: 58, Indels: 8
0.84 0.14 0.02
Matches are distributed among these distances:
40 70 0.20
41 275 0.80
ACGTcount: A:0.35, C:0.15, G:0.29, T:0.21
Consensus pattern (41 bp):
TACCGAAGTACAAACAGGGGCACGTATGTGCAATTTAGGGG
Found at i:14732425 original size:20 final size:20
Alignment explanation
Indices: 14732400--14732465 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
14732390 ATGCGTTATT
14732400 TAGGGGTACCGAAGTACAAA
1 TAGGGGTACCGAAGTACAAA
* * * *
14732420 TAGGGGCA-CGTATGTGCAAT
1 TAGGGGTACCG-AAGTACAAA
*
14732440 TCAGGGGTACCAAAGTACAAA
1 T-AGGGGTACCGAAGTACAAA
*
14732461 CAGGG
1 TAGGG
14732466 CTACGTATGT
Statistics
Matches: 33, Mismatches: 10, Indels: 6
0.67 0.20 0.12
Matches are distributed among these distances:
19 2 0.06
20 18 0.55
21 12 0.36
22 1 0.03
ACGTcount: A:0.35, C:0.17, G:0.32, T:0.17
Consensus pattern (20 bp):
TAGGGGTACCGAAGTACAAA
Found at i:14732569 original size:21 final size:21
Alignment explanation
Indices: 14732543--14732605 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
14732533 AAGTACAAAG
14732543 AGGGGTATGTATGTGCAATTC
1 AGGGGTATGTATGTGCAATTC
* * * *
14732564 AGGGGTACCG-AAGTACAA-AC
1 AGGGGTA-TGTATGTGCAATTC
*
14732584 AGGGGCATGTATGTGCAATTC
1 AGGGGTATGTATGTGCAATTC
14732605 A
1 A
14732606 AGGGATCGAA
Statistics
Matches: 30, Mismatches: 9, Indels: 6
0.67 0.20 0.13
Matches are distributed among these distances:
19 1 0.03
20 13 0.43
21 15 0.50
22 1 0.03
ACGTcount: A:0.30, C:0.14, G:0.32, T:0.24
Consensus pattern (21 bp):
AGGGGTATGTATGTGCAATTC
Found at i:14732585 original size:122 final size:121
Alignment explanation
Indices: 14732376--14732812 Score: 536
Period size: 122 Copynumber: 3.6 Consensus size: 121
14732366 ACCGAAGTGT
* * **
14732376 AAACAGGGGCACATATGCGTTATTTAGGGGTACCGAAGTACAAATAGGGGCACGTATGTGCAATT
1 AAACAGGGCCACATATGTGCAATTTAGGGGTACCGAAGTACAAATAGGGGCACGTATGTGCAATT
* * *
14732441 CAGGGGTACCAAAGTACAAACAGGGCTACGTATGTGTAATTTAGGGTATCGAAGTAT
66 CAGGGGTACCAAAGTACAAACAGGGC-ACGTATGTGCAATTAAGGGTATCGAAGTAC
* * * * *
14732498 AAACAGGGCCACGTATGTGTAATTTAGGGGTACCGAAGTACAAAGAGGGGTATGTATGTGCAATT
1 AAACAGGGCCACATATGTGCAATTTAGGGGTACCGAAGTACAAATAGGGGCACGTATGTGCAATT
* *
14732563 CAGGGGTACCGAAGTACAAACAGGGGCATGTATGTGCAATTCAAGGG-ATCGAAGTAC
66 CAGGGGTACCAAAGTACAAACA-GGGCACGTATGTGCAATT-AAGGGTATCGAAGTAC
* * * * *
14732620 AAATAGGGGCACATATGTGCAATTTAGGGGTACCGAAGTAAAAATAGGGGTACATATGTGCAATT
1 AAACAGGGCCACATATGTGCAATTTAGGGGTACCGAAGTACAAATAGGGGCACGTATGTGCAATT
* * * *
14732685 CAGGGGTACCAAAGTACAAAAAAGGGCACGTATGTGCAATTCAGTGGTACCAAAGTAC
66 CAGGGGTACCAAAGTAC-AAACAGGGCACGTATGTGCAATTAAG-GGTATCGAAGTAC
* * * * * *
14732743 AAACAAAGG-CACACATGTGCAATTAAGGGGTATCGAAGAACAAACAGGGGCACGTATGTGCAAT
1 AAAC-AGGGCCACATATGTGCAATTTAGGGGTACCGAAGTACAAATAGGGGCACGTATGTGCAAT
*
14732807 TTAGGG
65 TCAGGG
14732813 TATAATTAAC
Statistics
Matches: 272, Mismatches: 37, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
121 2 0.01
122 192 0.71
123 75 0.28
124 3 0.01
ACGTcount: A:0.35, C:0.15, G:0.29, T:0.21
Consensus pattern (121 bp):
AAACAGGGCCACATATGTGCAATTTAGGGGTACCGAAGTACAAATAGGGGCACGTATGTGCAATT
CAGGGGTACCAAAGTACAAACAGGGCACGTATGTGCAATTAAGGGTATCGAAGTAC
Found at i:14732588 original size:20 final size:20
Alignment explanation
Indices: 14732523--14732588 Score: 62
Period size: 20 Copynumber: 3.2 Consensus size: 20
14732513 TGTGTAATTT
*
14732523 AGGGGTACCGAAGTACAAAG
1 AGGGGTACCGAAGTACAAAC
* * * *
14732543 AGGGGTA-TGTATGTGCAATTC
1 AGGGGTACCG-AAGTACAA-AC
14732564 AGGGGTACCGAAGTACAAAC
1 AGGGGTACCGAAGTACAAAC
14732584 AGGGG
1 AGGGG
14732589 CATGTATGTG
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
19 1 0.03
20 19 0.56
21 13 0.38
22 1 0.03
ACGTcount: A:0.33, C:0.14, G:0.36, T:0.17
Consensus pattern (20 bp):
AGGGGTACCGAAGTACAAAC
Found at i:14732659 original size:163 final size:164
Alignment explanation
Indices: 14732401--14732812 Score: 526
Period size: 163 Copynumber: 2.5 Consensus size: 164
14732391 TGCGTTATTT
* * * *
14732401 AGGGGTACCGAAGTACAAATAGGGGCACGTATGTGCAATTCAGGGGTACCAAAGTACAAACA-GG
1 AGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAAGGGTATCGAAGTACAAACAGGG
* * * * * *
14732465 GCTACGTATGTGTAATTTA-GGGTATCGAAGTATAAACAGGGCCACGTATGTGTAATTTAGGGGT
66 GC-ACGTATGTGCAATTTAGGGGTACCGAAGTAAAAACAGGGCCACATATGTGCAATTCAGGGGT
* * * * *
14732529 ACCGAAGTACAAAGAGGGGTATGTATGTGCAATTC
130 ACCAAAGTACAAAAAAGGGCACGTATGTGCAATTC
* *
14732564 AGGGGTACCGAAGTACAAACAGGGGCATGTATGTGCAATTCAAGGG-ATCGAAGTACAAATAGGG
1 AGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAAGGGTATCGAAGTACAAACAGGG
* * **
14732628 GCACATATGTGCAATTTAGGGGTACCGAAGTAAAAATAGGGGTACATATGTGCAATTCAGGGGTA
66 GCACGTATGTGCAATTTAGGGGTACCGAAGTAAAAACAGGGCCACATATGTGCAATTCAGGGGTA
14732693 CCAAAGTACAAAAAAGGGCACGTATGTGCAATTC
131 CCAAAGTACAAAAAAGGGCACGTATGTGCAATTC
* * ** ** *
14732727 AGTGGTACCAAAGTACAAACAAAGGCACACATGTGCAATT-AAGGGGTATCGAAGAACAAACAGG
1 AGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAA-GGGTATCGAAGTACAAACAGG
14732791 GGCACGTATGTGCAATTTAGGG
65 GGCACGTATGTGCAATTTAGGG
14732813 TATAATTAAC
Statistics
Matches: 214, Mismatches: 31, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
162 28 0.13
163 150 0.70
164 36 0.17
ACGTcount: A:0.35, C:0.15, G:0.29, T:0.21
Consensus pattern (164 bp):
AGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAAGGGTATCGAAGTACAAACAGGG
GCACGTATGTGCAATTTAGGGGTACCGAAGTAAAAACAGGGCCACATATGTGCAATTCAGGGGTA
CCAAAGTACAAAAAAGGGCACGTATGTGCAATTC
Found at i:14732691 original size:21 final size:20
Alignment explanation
Indices: 14732623--14732693 Score: 61
Period size: 21 Copynumber: 3.5 Consensus size: 20
14732613 GAAGTACAAA
*
14732623 TAGGGGCACATATGTGCAATT
1 TAGGGGTACATATGTGCAA-T
** * ** *
14732644 TAGGGGTACCGAAGTAAAAA
1 TAGGGGTACATATGTGCAAT
14732664 TAGGGGTACATATGTGCAAT
1 TAGGGGTACATATGTGCAAT
14732684 TCAGGGGTAC
1 T-AGGGGTAC
14732694 CAAAGTACAA
Statistics
Matches: 36, Mismatches: 13, Indels: 2
0.71 0.25 0.04
Matches are distributed among these distances:
20 15 0.42
21 21 0.58
ACGTcount: A:0.32, C:0.13, G:0.31, T:0.24
Consensus pattern (20 bp):
TAGGGGTACATATGTGCAAT
Found at i:14740156 original size:41 final size:41
Alignment explanation
Indices: 14740094--14740376 Score: 252
Period size: 41 Copynumber: 7.0 Consensus size: 41
14740084 GATTTGAAGT
* * * *
14740094 TACCGGAGTGTAAACAAGGGCACATATGTGCTATTTAGGGG
1 TACCGAAGTATAAACAAGGGCACATATGTGCAATTCAGGGG
** * * *
14740135 TACCGAAGTGCAAACAGGGGCACGTATGTGTAATTCAGGGG
1 TACCGAAGTATAAACAAGGGCACATATGTGCAATTCAGGGG
* * ** * *
14740176 TACCGAAGTATAAATAAGGGTATGTATGTGTAATTTAGGGG
1 TACCGAAGTATAAACAAGGGCACATATGTGCAATTCAGGGG
* * *
14740217 TA-C-AA-AATAAAAAAAGGCACATATGTGCAATTCAGGGG
1 TACCGAAGTATAAACAAGGGCACATATGTGCAATTCAGGGG
* * * * *
14740255 TACAGAAGTACAAA-ACGAGGCACGTATGTGCAATTCAAGGG
1 TACCGAAGTATAAACAAG-GGCACATATGTGCAATTCAGGGG
* *
14740296 TACTGAAGTATAAA-TAGGGTCACATATGTGCAATTCAGGGG
1 TACCGAAGTATAAACAAGGG-CACATATGTGCAATTCAGGGG
* * * *
14740337 TACCGAAGTATAAATAGGGGTACAGATGTGCAATTCAGGG
1 TACCGAAGTATAAACAAGGGCACATATGTGCAATTCAGGG
14740377 TATAATTAAT
Statistics
Matches: 196, Mismatches: 40, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
38 27 0.14
39 2 0.01
40 6 0.03
41 158 0.81
42 3 0.02
ACGTcount: A:0.35, C:0.13, G:0.29, T:0.23
Consensus pattern (41 bp):
TACCGAAGTATAAACAAGGGCACATATGTGCAATTCAGGGG
Found at i:14740263 original size:79 final size:81
Alignment explanation
Indices: 14740153--14740378 Score: 255
Period size: 79 Copynumber: 2.8 Consensus size: 81
14740143 TGCAAACAGG
* * * * * *
14740153 GGCACGTATGTGTAATTCAGGGGTACCGAAGTATAAATAAGGGTATGTATGTGTAATTTAGGGGT
1 GGCACATATGTGCAATTCAGGGGTACCGAAGTATAAATAAGGGTACGTATGTGCAATTCAAGGGT
14740218 AC-AAAATA-AAAAAA
66 ACTAAAATATAAAAAA
* * * *
14740232 GGCACATATGTGCAATTCAGGGGTACAGAAGTACAAA-ACGAGGCACGTATGTGCAATTCAAGGG
1 GGCACATATGTGCAATTCAGGGGTACCGAAGTATAAATAAG-GGTACGTATGTGCAATTCAAGGG
* * * *
14740296 TACTGAAGTATAAATAG
65 TACTAAAATATAAAAAA
*
14740313 GGTCACATATGTGCAATTCAGGGGTACCGAAGTATAAATAGGGGTACAG-ATGTGCAATTC-AGG
1 GG-CACATATGTGCAATTCAGGGGTACCGAAGTATAAATAAGGGTAC-GTATGTGCAATTCAAGG
14740376 GTA
64 GTA
14740379 TAATTAATTA
Statistics
Matches: 123, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.02
79 54 0.44
80 4 0.03
81 12 0.10
82 48 0.39
83 3 0.02
ACGTcount: A:0.36, C:0.12, G:0.28, T:0.24
Consensus pattern (81 bp):
GGCACATATGTGCAATTCAGGGGTACCGAAGTATAAATAAGGGTACGTATGTGCAATTCAAGGGT
ACTAAAATATAAAAAA
Found at i:14740325 original size:120 final size:120
Alignment explanation
Indices: 14740112--14740339 Score: 316
Period size: 120 Copynumber: 1.9 Consensus size: 120
14740102 TGTAAACAAG
* * * * * * *
14740112 GGCACATATGTGCTATTTAGGGGTACCGAAGTGCAAACAGGGGCACGTATGTGTAATTCAGGGGT
1 GGCACATATGTGCAATTCAGGGGTACAGAAGTACAAACAGAGGCACGTATGTGCAATTCAAGGGT
** * *
14740177 ACCGAAGTATAAATAAGGGTATGTATGTGTAATTTAGGGGTACAAAATAAAAAAA
66 ACCGAAGTATAAATAAGGGTACATATGTGCAATTCAGGGGTACAAAATAAAAAAA
14740232 GGCACATATGTGCAATTCAGGGGTACAGAAGTACAAA-ACGAGGCACGTATGTGCAATTCAAGGG
1 GGCACATATGTGCAATTCAGGGGTACAGAAGTACAAACA-GAGGCACGTATGTGCAATTCAAGGG
*
14740296 TACTGAAGTATAAAT-AGGGTCACATATGTGCAATTCAGGGGTAC
65 TACCGAAGTATAAATAAGGGT-ACATATGTGCAATTCAGGGGTAC
14740340 CGAAGTATAA
Statistics
Matches: 94, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
119 6 0.06
120 88 0.94
ACGTcount: A:0.35, C:0.13, G:0.28, T:0.24
Consensus pattern (120 bp):
GGCACATATGTGCAATTCAGGGGTACAGAAGTACAAACAGAGGCACGTATGTGCAATTCAAGGGT
ACCGAAGTATAAATAAGGGTACATATGTGCAATTCAGGGGTACAAAATAAAAAAA
Found at i:14753115 original size:19 final size:19
Alignment explanation
Indices: 14753087--14753123 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
14753077 TCGGATCCTT
14753087 GATGCACGGATCCTTCCCG
1 GATGCACGGATCCTTCCCG
*
14753106 GATGCGCGGATCCTTCCC
1 GATGCACGGATCCTTCCC
14753124 AGATCGGGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.14, C:0.38, G:0.27, T:0.22
Consensus pattern (19 bp):
GATGCACGGATCCTTCCCG
Found at i:14754442 original size:131 final size:131
Alignment explanation
Indices: 14754290--14754889 Score: 995
Period size: 131 Copynumber: 4.6 Consensus size: 131
14754280 TCCCTACTCC
* * *
14754290 TAGGGAAGATAAGTTCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTCG
1 TAGGG-AGATAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGG
* *
14754355 CTTAAATCTGTTTCCTTACTCCTGGGGAAAATAAGATTCGTCGCCTTCGATCTGCTCCACTATTG
65 CTTAAATCTGTTTCCCTACTCCTGGGGAAAATAAGATTCGCCGCCTTCGATCTGCTCCACTATTG
14754420 CT
130 CT
*
14754422 TAGGGAGATAAGATTTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGGC
1 TAGGGAGATAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGGC
* *
14754487 TTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGC
66 TTAAATCTGTTTCCCTACTCCTGGGGAAAATAAGATTCGCCGCCTTCGATCTGCTCCACTATTGC
14754552 T
131 T
*
14754553 TAGGGAGATAAGATCTGTAATCTTCAACCTATCCCACTGCTAACCAGGGAGATAGGACTAGTGGC
1 TAGGGAGATAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGGC
* * *
14754618 TTAAATTTGTTTCCCTACTCCT-GGGAAAATAAGATTTGCCGCCTTCGATCTGCTCCACTGTTGC
66 TTAAATCTGTTTCCCTACTCCTGGGGAAAATAAGATTCGCCGCCTTCGATCTGCTCCACTATTGC
14754682 T
131 T
* * *
14754683 TAGGGAGATAAGATCTATAATCTTCAACCTATCCCACTGCTGACCAAGGAGATAGGACTACTGGC
1 TAGGGAGATAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGGC
* **
14754748 TTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCATCTTCGATCTGCTCCACTATTGC
66 TTAAATCTGTTTCCCTACTCCTGGGGAAAATAAGATTCGCCGCCTTCGATCTGCTCCACTATTGC
14754813 T
131 T
* * *
14754814 TAGGGAGATAAGATCTGTAATCTTCAACTTATCCCACTGCTGACCAAGGAGATAGGACTACTGGC
1 TAGGGAGATAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGGC
14754879 TTAAATCTGTT
66 TTAAATCTGTT
14754890 GACTAGTGGC
Statistics
Matches: 440, Mismatches: 27, Indels: 3
0.94 0.06 0.01
Matches are distributed among these distances:
130 121 0.28
131 314 0.71
132 5 0.01
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (131 bp):
TAGGGAGATAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGGC
TTAAATCTGTTTCCCTACTCCTGGGGAAAATAAGATTCGCCGCCTTCGATCTGCTCCACTATTGC
T
Found at i:14754738 original size:261 final size:263
Alignment explanation
Indices: 14754290--14755197 Score: 1274
Period size: 261 Copynumber: 3.4 Consensus size: 263
14754280 TCCCTACTCC
* *
14754290 TAGGGAAGATAAGTTCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTCG
1 TAGGGAAGATAAGATCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGG
* * *
14754355 CTTAAATCTGTTTCCTTACTCCTGGGGAAAATAAGATTCGTCGCCTTCGATCTGCTCCACTATTG
66 CTTAAATCTGTTTCCCTACTCCTGGGGAAAATAAGATTTGCCGCCTTCGATCTGCTCCACTATTG
*
14754420 CTTAGGGAGATAAGATTTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTG
131 CTTAGGGAGATAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTG
14754485 GCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATT
196 GCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATT
14754550 GCT
261 GCT
* *
14754553 TAGGG-AGATAAGATCTGTAATCTTCAACCTATCCCACTGCTAACCAGGGAGATAGGACTAGTGG
1 TAGGGAAGATAAGATCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGG
* *
14754617 CTTAAATTTGTTTCCCTACTCCT-GGGAAAATAAGATTTGCCGCCTTCGATCTGCTCCACTGTTG
66 CTTAAATCTGTTTCCCTACTCCTGGGGAAAATAAGATTTGCCGCCTTCGATCTGCTCCACTATTG
* * *
14754681 CTTAGGGAGATAAGATCTATAATCTTCAACCTATCCCACTGCTGACCAAGGAGATAGGACTACTG
131 CTTAGGGAGATAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTG
*
14754746 GCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCATCTTCGATCTGCTCCACTATT
196 GCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATT
14754811 GCT
261 GCT
* *
14754814 TAGGG-AGATAAGATCTGTAATCTTCAACTTATCCCACTGCTGACCAAGGAGATAGGACTACTGG
1 TAGGGAAGATAAGATCCGTAATCTTCAACCTATCCCACTGCTGACC-AGG-G--A-G---A----
*
14754878 CTTAAATCTGTTGACTAGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCT-CCG
54 --T--A---G--GACTAGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAAATAAGATT-TGCCG
* * *
14754942 TCTTCGATTTGCTCCACTATTGCTTAGGGAGACAAGATCTGTAATCTTCAACCTATCCCACTGCT
109 CCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAATCTTCAACCTATCCCACTGCT
* * *
14755007 GACCAGGGAGATAGGACTAGTGGCTTAAATCTGTTTTCCTACTCCTGGGGAAGATAAGATTCACT
174 GACCAGGGAGATAGGACTAGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCC
* * *
14755072 G-CTTAGATCTGCTTCC-CTACT-CC
239 GTCTTCGATCTGC-TCCACTATTGCT
* **
14755095 T-GGGAAAGATAAGATCCGTAATCTTCAACCTATCCCACTACTGACCAGGGCTATAGGACTAGTG
1 TAGGG-AAGATAAGATCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTG
*
14755159 GCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATT
65 GCTTAAATCTGTTTCCCTACTCCTGGGGAAAATAAGATT
14755198 CCCCGCTTAA
Statistics
Matches: 582, Mismatches: 37, Indels: 54
0.86 0.05 0.08
Matches are distributed among these distances:
261 256 0.44
262 79 0.14
263 7 0.01
265 1 0.00
266 2 0.00
268 1 0.00
269 1 0.00
274 1 0.00
275 1 0.00
277 1 0.00
280 5 0.01
281 5 0.01
282 82 0.14
283 139 0.24
284 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.30
Consensus pattern (263 bp):
TAGGGAAGATAAGATCCGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTGG
CTTAAATCTGTTTCCCTACTCCTGGGGAAAATAAGATTTGCCGCCTTCGATCTGCTCCACTATTG
CTTAGGGAGATAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTG
GCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATT
GCT
Found at i:14754893 original size:21 final size:21
Alignment explanation
Indices: 14754869--14754910 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
14754859 AAGGAGATAG
14754869 GACTACTGGCTTAAATCTGTT
1 GACTACTGGCTTAAATCTGTT
*
14754890 GACTAGTGGCTTAAATCTGTT
1 GACTACTGGCTTAAATCTGTT
14754911 TCCCTACTCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.38
Consensus pattern (21 bp):
GACTACTGGCTTAAATCTGTT
Found at i:14755017 original size:152 final size:152
Alignment explanation
Indices: 14754738--14755041 Score: 536
Period size: 152 Copynumber: 2.0 Consensus size: 152
14754728 AAGGAGATAG
14754738 GACTACTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCATCTTCGATCTGCT
1 GACTACTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCATCTTCGATCTGCT
* *
14754803 CCACTATTGCTTAGGGAGATAAGATCTGTAATCTTCAACTTATCCCACTGCTGACCAAGGAGATA
66 CCACTATTGCTTAGGGAGACAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAAGGAGATA
14754868 GGACTACTGGCTTAAATCTGTT
131 GGACTACTGGCTTAAATCTGTT
* * * *
14754890 GACTAGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCTCCGTCTTCGATTTGCT
1 GACTACTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCATCTTCGATCTGCT
*
14754955 CCACTATTGCTTAGGGAGACAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGATA
66 CCACTATTGCTTAGGGAGACAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAAGGAGATA
*
14755020 GGACTAGTGGCTTAAATCTGTT
131 GGACTACTGGCTTAAATCTGTT
14755042 TTCCTACTCC
Statistics
Matches: 144, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
152 144 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (152 bp):
GACTACTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCATCTTCGATCTGCT
CCACTATTGCTTAGGGAGACAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAAGGAGATA
GGACTACTGGCTTAAATCTGTT
Found at i:14755082 original size:43 final size:43
Alignment explanation
Indices: 14755029--14755541 Score: 209
Period size: 43 Copynumber: 11.9 Consensus size: 43
14755019 AGGACTAGTG
* *
14755029 GCTTAAATCTGTTTTCCTACTCCTGGGGAAGATAAGATTCACT
1 GCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCACT
* * * *
14755072 GCTTAGATCTGCTTCCCTACTCCTGGGAAAGATAAGATCCGTAAT
1 GCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTC--ACT
* * * * * ** * * *
14755117 -CTTCAACCT-ATCCCACTACTGACC-AGGG-CTATAGGACT-AGT
1 GCTTAAATCTGCTTCC-CTACT--CCTGGGGAAGATAAGATTCACT
* * *
14755158 GGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCCCC
1 -GCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCACT
* *
14755202 GCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGCC
1 GCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCACT
* * * * * *
14755245 GCTTAGATCTACTTCCCTACTCTTGGGGAGGATAAGATCCGTAAT
1 GCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTC--ACT
* * ** * * *
14755290 -CTTCAA-C--CTATCCC-ACTACTGACCAGAGAGATAGGACT-AGT
1 GCTTAAATCTGCT-TCCCTACTCCTG--GGGA-AGATAAGATTCACT
* * * * *
14755331 GGCTTAAATTTGTTTCCCTACTCCTAGGGAAGATAAGATTCGCC
1 -GCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCACT
* * *
14755375 GCTTAGATTTGCTTCCCTACTCTTGGGGAAGATAAGA-TC-CGT
1 GCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCAC-T
* * * * * *
14755417 AACTTTAA-C--CTATCCC-ACTGCTGACCAGGG-AGATAGGACT-AGT
1 -GCTTAAATCTGCT-TCCCTACTCCTG----GGGAAGATAAGATTCACT
* * * *
14755460 GGCTTAAATATGTTTCCCTACTCCTGGGGAAGATAAGATTCGCC
1 -GCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCACT
* * *
14755504 GCTTAGATCTGCTTCCCTACTCTTGAGGAAGATAAGAT
1 GCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGAT
14755542 CCGTAATCTT
Statistics
Matches: 338, Mismatches: 93, Indels: 78
0.66 0.18 0.15
Matches are distributed among these distances:
40 7 0.02
41 18 0.05
42 12 0.04
43 239 0.71
44 35 0.10
45 12 0.04
46 15 0.04
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (43 bp):
GCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCACT
Found at i:14755155 original size:130 final size:129
Alignment explanation
Indices: 14754890--14755239 Score: 506
Period size: 130 Copynumber: 2.7 Consensus size: 129
14754880 TAAATCTGTT
* * *
14754890 GACTAGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCTCCGTCTTCGATTTGC-
1 GACTAGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCACCG-CTTAGATCTGCT
* * * * *
14754954 TCCACTATTGCTTAGGG-AGACAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCAGGGAGA
65 TCC-CTACT-CCT-GGGAAGATAAGATCCGTAATCTTCAACCTATCCCACTACTGACCAGGGAGA
14755018 TAG
127 TAG
* *
14755021 GACTAGTGGCTTAAATCTGTTTTCCTACTCCTGGGGAAGATAAGATTCACTGCTTAGATCTGCTT
1 GACTAGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCACCGCTTAGATCTGCTT
**
14755086 CCCTACTCCTGGGAAAGATAAGATCCGTAATCTTCAACCTATCCCACTACTGACCAGGGCTATAG
66 CCCTACTCCTGGG-AAGATAAGATCCGTAATCTTCAACCTATCCCACTACTGACCAGGGAGATAG
* *
14755151 GACTAGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCCCCGCTTAAATCTGCTT
1 GACTAGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCACCGCTTAGATCTGCTT
14755216 CCCTACTCCTGGGGAAGATAAGAT
66 CCCTACTCCT-GGGAAGATAAGAT
14755240 TCGCCGCTTA
Statistics
Matches: 199, Mismatches: 16, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
128 3 0.02
129 2 0.01
130 139 0.70
131 55 0.28
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (129 bp):
GACTAGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCACCGCTTAGATCTGCTT
CCCTACTCCTGGGAAGATAAGATCCGTAATCTTCAACCTATCCCACTACTGACCAGGGAGATAG
Found at i:14755230 original size:173 final size:173
Alignment explanation
Indices: 14755029--14755412 Score: 615
Period size: 173 Copynumber: 2.2 Consensus size: 173
14755019 AGGACTAGTG
* * * *
14755029 GCTTAAATCTGTTTTCCTACTCCTGGGGAAGATAAGATTCACTGCTTAGATCTGCTTCCCTACTC
1 GCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCACCGCTTAGATCTACTTCCCTACTC
* **
14755094 CTGGGAAAGATAAGATCCGTAATCTTCAACCTATCCCACTACTGACCAGGGCTATAGGACTAGTG
66 CTGGGAAAGATAAGATCCGTAATCTTCAACCTATCCCACTACTGACCAGAGAGATAGGACTAGTG
*
14755159 GCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCCCC
131 GCTTAAATCTGTTTCCCTACTCCTAGGGAAGATAAGATTCCCC
*
14755202 GCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGCCGCTTAGATCTACTTCCCTACTC
1 GCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCACCGCTTAGATCTACTTCCCTACTC
* * *
14755267 TTGGGGAGGATAAGATCCGTAATCTTCAACCTATCCCACTACTGACCAGAGAGATAGGACTAGTG
66 CTGGGAAAGATAAGATCCGTAATCTTCAACCTATCCCACTACTGACCAGAGAGATAGGACTAGTG
* *
14755332 GCTTAAATTTGTTTCCCTACTCCTAGGGAAGATAAGATTCGCC
131 GCTTAAATCTGTTTCCCTACTCCTAGGGAAGATAAGATTCCCC
* * *
14755375 GCTTAGATTTGCTTCCCTACTCTTGGGGAAGATAAGAT
1 GCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGAT
14755413 CCGTAACTTT
Statistics
Matches: 194, Mismatches: 17, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
173 194 1.00
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (173 bp):
GCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCACCGCTTAGATCTACTTCCCTACTC
CTGGGAAAGATAAGATCCGTAATCTTCAACCTATCCCACTACTGACCAGAGAGATAGGACTAGTG
GCTTAAATCTGTTTCCCTACTCCTAGGGAAGATAAGATTCCCC
Found at i:14755490 original size:129 final size:130
Alignment explanation
Indices: 14755202--14755553 Score: 598
Period size: 129 Copynumber: 2.7 Consensus size: 130
14755192 AAGATTCCCC
* * *
14755202 GCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGCCGCTTAGATCTACTTCCCTACTC
1 GCTTAAATATGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGCTTAGATCTGCTTCCCTACTC
*
14755267 TTGGGGAGGATAAGATCCGTAATCTTCAACCTATCCCACTACTGACCAGAGAGATAGGACTAGTG
66 TTGGGGAAGATAAGATCCGTAATCTTCAACCTATCCCACTACTGACCAGAGAGATAGGACTAGTG
* * *
14755332 GCTTAAATTTGTTTCCCTACTCCTAGGGAAGATAAGATTCGCCGCTTAGATTTGCTTCCCTACTC
1 GCTTAAATATGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGCTTAGATCTGCTTCCCTACTC
* * *
14755397 TTGGGGAAGATAAGATCCGTAA-CTTTAACCTATCCCACTGCTGACCAGGGAGATAGGACTAGTG
66 TTGGGGAAGATAAGATCCGTAATCTTCAACCTATCCCACTACTGACCAGAGAGATAGGACTAGTG
14755461 GCTTAAATATGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGCTTAGATCTGCTTCCCTACTC
1 GCTTAAATATGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGCTTAGATCTGCTTCCCTACTC
*
14755526 TTGAGGAAGATAAGATCCGTAATCTTCA
66 TTGGGGAAGATAAGATCCGTAATCTTCA
14755554 TTGATCTGTT
Statistics
Matches: 207, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
129 122 0.59
130 85 0.41
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (130 bp):
GCTTAAATATGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGCTTAGATCTGCTTCCCTACTC
TTGGGGAAGATAAGATCCGTAATCTTCAACCTATCCCACTACTGACCAGAGAGATAGGACTAGTG
Found at i:14756813 original size:21 final size:21
Alignment explanation
Indices: 14756789--14756831 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
14756779 CCTTAGCCTC
*
14756789 TCCATTTTTACTTTTTC-ATTT
1 TCCATTTTCA-TTTTTCAATTT
14756810 TCCATTTTCATTTTTCAATTT
1 TCCATTTTCATTTTTCAATTT
14756831 T
1 T
14756832 TCACACATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.16, C:0.19, G:0.00, T:0.65
Consensus pattern (21 bp):
TCCATTTTCATTTTTCAATTT
Found at i:14757737 original size:7 final size:7
Alignment explanation
Indices: 14757725--14757758 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
14757715 TCCATCTAGA
14757725 TTTTTTC
1 TTTTTTC
14757732 TTTTTTC
1 TTTTTTC
14757739 TTCTTTTC
1 TT-TTTTC
*
14757747 TTCTTTC
1 TTTTTTC
14757754 TTTTT
1 TTTTT
14757759 CTCTAATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 17 0.71
8 7 0.29
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (7 bp):
TTTTTTC
Found at i:14757793 original size:19 final size:19
Alignment explanation
Indices: 14757766--14757802 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
14757756 TTTCTCTAAT
*
14757766 TTTTTATTTTGATTTTTTA
1 TTTTGATTTTGATTTTTTA
14757785 TTTTGATTTTGATTTTTT
1 TTTTGATTTTGATTTTTT
14757803 TGAAAGGATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.14, C:0.00, G:0.08, T:0.78
Consensus pattern (19 bp):
TTTTGATTTTGATTTTTTA
Found at i:14757801 original size:13 final size:13
Alignment explanation
Indices: 14757764--14757794 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
14757754 TTTTTCTCTA
14757764 ATTTTTTATTTTG
1 ATTTTTTATTTTG
14757777 ATTTTTTATTTTG
1 ATTTTTTATTTTG
14757790 ATTTT
1 ATTTT
14757795 GATTTTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.06, T:0.77
Consensus pattern (13 bp):
ATTTTTTATTTTG
Found at i:14775123 original size:28 final size:28
Alignment explanation
Indices: 14775075--14775170 Score: 122
Period size: 28 Copynumber: 3.4 Consensus size: 28
14775065 CCTATACAGT
* *
14775075 AACAGT-ACAGTGTGGGTCTTAACCCAA
1 AACAGTAACAGTGTGGGCCTTAGCCCAA
*
14775102 AACAGTAACAATGTGGGCCTTAGCCCAA
1 AACAGTAACAGTGTGGGCCTTAGCCCAA
* *
14775130 TACAGTAATAGTGTGGGCCTTAGCCCAA
1 AACAGTAACAGTGTGGGCCTTAGCCCAA
*
14775158 TACAGTAATCAGT
1 AACAGTAA-CAGT
14775171 ATAGTGCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 6 0.10
28 51 0.85
29 3 0.05
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.23
Consensus pattern (28 bp):
AACAGTAACAGTGTGGGCCTTAGCCCAA
Found at i:14775552 original size:27 final size:27
Alignment explanation
Indices: 14775506--14775733 Score: 119
Period size: 27 Copynumber: 8.3 Consensus size: 27
14775496 CAGGTATAAT
* *
14775506 AGTCATTTTACACTGT-AGGGGTATTTT
1 AGTCATTTTAC-CTTTCAGGGGTATTTC
* *
14775533 GGTCATTTTACCTTTCA-GGGTATTTT
1 AGTCATTTTACCTTTCAGGGGTATTTC
* **
14775559 AGTTATTTTACCATTTGGGTTGGGGCTATTTC
1 AGTCATTTTACC-TTT---CAGGGG-TATTTC
* * *
14775591 AGTCATTTTACC-CTCCGAAGGTATTTC
1 AGTCATTTTACCTTTCAG-GGGTATTTC
* *
14775618 GGTCATTTTACC-CTCTAGGGGTATTTC
1 AGTCATTTTACCTTTC-AGGGGTATTTC
* * *
14775645 AGTCATTTTACCCTAC-GAGGGTATTTT
1 AGTCATTTTACCTTTCAG-GGGTATTTC
* *
14775672 AGTCATTTTACCGTTTGA-GGCTATTTC
1 AGTCATTTTACC-TTTCAGGGGTATTTC
* * *
14775699 GGTCATTTTACC-CTCTGAGGGTATTTC
1 AGTCATTTTACCTTTCAG-GGGTATTTC
*
14775726 GGTCATTT
1 AGTCATTT
14775734 GCCCACGATT
Statistics
Matches: 157, Mismatches: 29, Indels: 30
0.73 0.13 0.14
Matches are distributed among these distances:
25 1 0.01
26 23 0.15
27 108 0.69
28 5 0.03
30 1 0.01
31 3 0.02
32 16 0.10
ACGTcount: A:0.18, C:0.18, G:0.21, T:0.43
Consensus pattern (27 bp):
AGTCATTTTACCTTTCAGGGGTATTTC
Found at i:14775653 original size:54 final size:53
Alignment explanation
Indices: 14775580--14775733 Score: 200
Period size: 54 Copynumber: 2.8 Consensus size: 53
14775570 CATTTGGGTT
*
14775580 GGGGCTATTTCAGTCATTTTACCCTCCGAAGGTATTTCGGTCATTTTACCCTCTA
1 GGGG-TATTTCAGTCATTTTACCCTCCGAGGGTATTTCGGTCATTTTACCCT-TA
* ** * *
14775635 GGGGTATTTCAGTCATTTTACCCTACGAGGGTATTTTAGTCATTTTACCGTTT
1 GGGGTATTTCAGTCATTTTACCCTCCGAGGGTATTTCGGTCATTTTACCCTTA
* * *
14775688 GAGGCTATTTCGGTCATTTTACCCTCTGAGGGTATTTCGGTCATTT
1 G-GGGTATTTCAGTCATTTTACCCTCCGAGGGTATTTCGGTCATTT
14775734 GCCCACGATT
Statistics
Matches: 86, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
53 2 0.02
54 80 0.93
55 4 0.05
ACGTcount: A:0.18, C:0.21, G:0.21, T:0.41
Consensus pattern (53 bp):
GGGGTATTTCAGTCATTTTACCCTCCGAGGGTATTTCGGTCATTTTACCCTTA
Found at i:14775697 original size:81 final size:81
Alignment explanation
Indices: 14775585--14775733 Score: 221
Period size: 81 Copynumber: 1.8 Consensus size: 81
14775575 GGGTTGGGGC
14775585 TATTTCAGTCATTTTACCCTCCGAAGGTATTTCGGTCATTTTACCCTCT-AGGGGTATTTCAGTC
1 TATTTCAGTCATTTTACCCTCCGAAGGTATTTCGGTCATTTTACCCTCTGA-GGGTATTTCAGTC
14775649 ATTTTACCCTACGAGGG
65 ATTTTACCCTACGAGGG
* * ** *
14775666 TATTTTAGTCATTTTACCGTTTG-AGGCTATTTCGGTCATTTTACCCTCTGAGGGTATTTCGGTC
1 TATTTCAGTCATTTTACCCTCCGAAGG-TATTTCGGTCATTTTACCCTCTGAGGGTATTTCAGTC
14775730 ATTT
65 ATTT
14775734 GCCCACGATT
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
80 3 0.05
81 57 0.93
82 1 0.02
ACGTcount: A:0.18, C:0.21, G:0.19, T:0.42
Consensus pattern (81 bp):
TATTTCAGTCATTTTACCCTCCGAAGGTATTTCGGTCATTTTACCCTCTGAGGGTATTTCAGTCA
TTTTACCCTACGAGGG
Found at i:14776441 original size:21 final size:21
Alignment explanation
Indices: 14776417--14776458 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
14776407 ACTAGAATGT
*
14776417 AGAG-GAGAATAAGAGAAAAGC
1 AGAGAGAGAA-AAGAAAAAAGC
14776438 AGAGAAGAGAAAAGAAAAAAG
1 AGAG-AGAGAAAAGAAAAAAG
14776459 AAGGTTCGGC
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 4 0.22
22 9 0.50
23 5 0.28
ACGTcount: A:0.64, C:0.02, G:0.31, T:0.02
Consensus pattern (21 bp):
AGAGAGAGAAAAGAAAAAAGC
Found at i:14782637 original size:28 final size:28
Alignment explanation
Indices: 14782597--14782708 Score: 170
Period size: 28 Copynumber: 4.0 Consensus size: 28
14782587 GTAACAGTAT
* *
14782597 AGTGTGGGTCTTAGCCCAAAACAGTAAC
1 AGTGTGGGCCTTAGCCCAATACAGTAAC
* *
14782625 AATGTGGGCCTTAGCCCAATACAGTAAT
1 AGTGTGGGCCTTAGCCCAATACAGTAAC
*
14782653 AGTGTGGGCCTTAGCCCAATACAGTAAT
1 AGTGTGGGCCTTAGCCCAATACAGTAAC
*
14782681 AGTGTGTGCCTTAGCCCAATACAGTAAC
1 AGTGTGGGCCTTAGCCCAATACAGTAAC
14782709 TAGTATAGTG
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 77 1.00
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.24
Consensus pattern (28 bp):
AGTGTGGGCCTTAGCCCAATACAGTAAC
Found at i:14783136 original size:53 final size:53
Alignment explanation
Indices: 14783062--14783335 Score: 302
Period size: 54 Copynumber: 5.1 Consensus size: 53
14783052 GGTATAATAG
* * * * *
14783062 TCATTTTACCCTATTGAGGTATTTCAGTCATTTTACCCTTTGGGGTAATTCGA
1 TCATTTTACCCTCTAGGGGTATTTCAGTCATTTTACCCTCTGGGGTATTTCGA
* * *
14783115 TTATTTTACCCTC-CGAGGGTATTTC-GATCATTTTACCCTCCAGGGGTATTTCGA
1 TCATTTTACCCTCTAG-GGGTATTTCAG-TCATTTTACCCT-CTGGGGTATTTCGA
* * *
14783169 TCATTTTACCCTTTAGGGGTATTTCAGTTATTTTATCCTCTGAGGGTATTTC-A
1 TCATTTTACCCTCTAGGGGTATTTCAGTCATTTTACCCTCTG-GGGTATTTCGA
** * *
14783222 GTCATTTTACCCTCTAGGGGTATTTTGGTCATTTTACCCTCTGGGGTATTTTGG
1 -TCATTTTACCCTCTAGGGGTATTTCAGTCATTTTACCCTCTGGGGTATTTCGA
* * * *
14783276 TCATTTTACCTTTTAAGGGTATTTCAGTCATTTTACCCTCTAGGGATATTTCGA
1 TCATTTTACCCTCTAGGGGTATTTCAGTCATTTTACCCTCT-GGGGTATTTCGA
14783330 TCATTT
1 TCATTT
14783336 GCCCACAAAT
Statistics
Matches: 184, Mismatches: 28, Indels: 17
0.80 0.12 0.07
Matches are distributed among these distances:
52 2 0.01
53 78 0.42
54 102 0.55
55 2 0.01
ACGTcount: A:0.19, C:0.19, G:0.18, T:0.44
Consensus pattern (53 bp):
TCATTTTACCCTCTAGGGGTATTTCAGTCATTTTACCCTCTGGGGTATTTCGA
Found at i:14783310 original size:80 final size:79
Alignment explanation
Indices: 14783060--14783335 Score: 340
Period size: 80 Copynumber: 3.4 Consensus size: 79
14783050 GGGGTATAAT
* * * * *
14783060 AGTCATTTTACCCTATTGAGGTATTTC-AGTCATTTTACCCTTTGGGGTAATTCGATTATTTTAC
1 AGTCATTTTACCCTCTAGGGGTATTTCGA-TCATTTTACCCTTTGGGGTATTTCGGTTATTTTA-
*
14783124 CCTCCGAGGGTATTTC
64 CCTCTGAGGGTATTTC
* *
14783140 -GATCATTTTACCCTCCAGGGGTATTTCGATCATTTTACCCTTTAGGGGTATTTCAGTTATTTTA
1 AG-TCATTTTACCCTCTAGGGGTATTTCGATCATTTTACCCTTT-GGGGTATTTCGGTTATTTTA
14783204 TCCTCTGAGGGTATTTC
64 -CCTCTGAGGGTATTTC
* * * * *
14783221 AGTCATTTTACCCTCTAGGGGTATTTTGGTCATTTTACCCTCTGGGGTATTTTGGTCATTTTACC
1 AGTCATTTTACCCTCTAGGGGTATTTCGATCATTTTACCCTTTGGGGTATTTCGGTTATTTTACC
* *
14783286 TTTTAAGGGTATTTC
66 -TCTGAGGGTATTTC
*
14783301 AGTCATTTTACCCTCTAGGGATATTTCGATCATTT
1 AGTCATTTTACCCTCTAGGGGTATTTCGATCATTT
14783336 GCCCACAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
79 3 0.02
80 96 0.56
81 70 0.41
82 1 0.01
ACGTcount: A:0.19, C:0.19, G:0.18, T:0.44
Consensus pattern (79 bp):
AGTCATTTTACCCTCTAGGGGTATTTCGATCATTTTACCCTTTGGGGTATTTCGGTTATTTTACC
TCTGAGGGTATTTC
Found at i:14783325 original size:27 final size:27
Alignment explanation
Indices: 14783047--14783335 Score: 272
Period size: 27 Copynumber: 10.8 Consensus size: 27
14783037 ATCTCATCTC
*
14783047 CTAGGGGTATAAT-AGTCATTTTACCCT
1 CTAGGGGTAT-TTCAGTCATTTTACCCT
* * *
14783074 ATTGAGGTATTTCAGTCATTTTACCCT
1 CTAGGGGTATTTCAGTCATTTTACCCT
* * *
14783101 -TTGGGGTAATTC-GATTATTTTACCCT
1 CTAGGGGTATTTCAG-TCATTTTACCCT
*
14783127 C-CGAGGGTATTTC-GATCATTTTACCCT
1 CTAG-GGGTATTTCAG-TCATTTTACCCT
*
14783154 CCAGGGGTATTTC-GATCATTTTACCCT
1 CTAGGGGTATTTCAG-TCATTTTACCCT
* * *
14783181 TTAGGGGTATTTCAGTTATTTTATCCT
1 CTAGGGGTATTTCAGTCATTTTACCCT
14783208 CT-GAGGGTATTTCAGTCATTTTACCCT
1 CTAG-GGGTATTTCAGTCATTTTACCCT
**
14783235 CTAGGGGTATTTTGGTCATTTTACCCT
1 CTAGGGGTATTTCAGTCATTTTACCCT
** *
14783262 CT-GGGGTATTTTGGTCATTTTACCTT
1 CTAGGGGTATTTCAGTCATTTTACCCT
* *
14783288 TTAAGGGTATTTCAGTCATTTTACCCT
1 CTAGGGGTATTTCAGTCATTTTACCCT
*
14783315 CTAGGGATATTTC-GATCATTT
1 CTAGGGGTATTTCAG-TCATTT
14783336 GCCCACAAAT
Statistics
Matches: 223, Mismatches: 29, Indels: 20
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.00
26 49 0.22
27 170 0.76
28 3 0.01
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.43
Consensus pattern (27 bp):
CTAGGGGTATTTCAGTCATTTTACCCT
Found at i:14784042 original size:15 final size:15
Alignment explanation
Indices: 14784019--14784048 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14784009 CACTGGAATG
*
14784019 AAGAGGAGAAGAGAA
1 AAGAAGAGAAGAGAA
14784034 AAGAAGAGAAGAGAA
1 AAGAAGAGAAGAGAA
14784049 GAAAAAAGAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (15 bp):
AAGAAGAGAAGAGAA
Found at i:14792923 original size:35 final size:35
Alignment explanation
Indices: 14792882--14793041 Score: 160
Period size: 35 Copynumber: 4.6 Consensus size: 35
14792872 CTCTTTACTT
*
14792882 TGGTGTGTTTCGGTTGGACTAGCTCTTATGAGCAC
1 TGGTGTGTTTCGGTTGGATTAGCTCTTATGAGCAC
* * ** * *
14792917 TAGTGTGTTTCAGAGGGATTAGCTCTTATAAGCAT
1 TGGTGTGTTTCGGTTGGATTAGCTCTTATGAGCAC
*** * * *
14792952 TGGTGTGTTTCGAAGGGATTAGATCTTACGAGCAT
1 TGGTGTGTTTCGGTTGGATTAGCTCTTATGAGCAC
* *
14792987 TGGTGTG-TTCGGTTGAATTGGCTCTTATGAGCATC
1 TGGTGTGTTTCGGTTGGATTAGCTCTTATGAGCA-C
*
14793022 TGGTGTGTTTTGGTTGGATT
1 TGGTGTGTTTCGGTTGGATT
14793042 GTCGATGTAC
Statistics
Matches: 100, Mismatches: 23, Indels: 3
0.79 0.18 0.02
Matches are distributed among these distances:
34 19 0.19
35 71 0.71
36 10 0.10
ACGTcount: A:0.17, C:0.12, G:0.31, T:0.39
Consensus pattern (35 bp):
TGGTGTGTTTCGGTTGGATTAGCTCTTATGAGCAC
Found at i:14796770 original size:23 final size:23
Alignment explanation
Indices: 14796722--14796770 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
14796712 TTGTTAAGAT
*
14796722 TAATATTAAAAAATTTATATTTA
1 TAATATTAAAAAATTTATATTAA
* *
14796745 TAATATTATAACATTTAT-TATAA
1 TAATATTAAAAAATTTATAT-TAA
14796768 TAA
1 TAA
14796771 AATAAAAGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 1 0.05
23 21 0.95
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (23 bp):
TAATATTAAAAAATTTATATTAA
Found at i:14813904 original size:3 final size:3
Alignment explanation
Indices: 14813896--14813940 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
14813886 AGTCGTATTT
14813896 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14813941 ACATGCACAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:14814811 original size:9 final size:9
Alignment explanation
Indices: 14814794--14814830 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
14814784 TGAGTTTTCA
14814794 AATTCGAAT
1 AATTCGAAT
*
14814803 AACTCGAAT
1 AATTCGAAT
14814812 AATTCGAAT
1 AATTCGAAT
14814821 AATTCGAAT
1 AATTCGAAT
14814830 A
1 A
14814831 TTAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:14816556 original size:12 final size:12
Alignment explanation
Indices: 14816539--14816564 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14816529 ATGATTCTGT
14816539 TAAACTTTACTA
1 TAAACTTTACTA
14816551 TAAACTTTACTA
1 TAAACTTTACTA
14816563 TA
1 TA
14816565 TAGTGATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.42
Consensus pattern (12 bp):
TAAACTTTACTA
Found at i:14819904 original size:8 final size:8
Alignment explanation
Indices: 14819888--14819958 Score: 63
Period size: 9 Copynumber: 8.2 Consensus size: 8
14819878 TTAAGCTATT
14819888 ATATAATA
1 ATATAATA
*
14819896 ATATGATA
1 ATATAATA
*
14819904 AGTAGCAATA
1 A-TA-TAATA
14819914 ATATAAGTA
1 ATATAA-TA
14819923 ATAATAATA
1 AT-ATAATA
14819932 ATAATAATA
1 AT-ATAATA
14819941 ATAGTAATA
1 ATA-TAATA
14819950 ATA-AATA
1 ATATAATA
14819957 AT
1 AT
14819959 GAAAGATGAC
Statistics
Matches: 54, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
7 6 0.11
8 11 0.20
9 29 0.54
10 8 0.15
ACGTcount: A:0.59, C:0.01, G:0.07, T:0.32
Consensus pattern (8 bp):
ATATAATA
Found at i:14819916 original size:3 final size:3
Alignment explanation
Indices: 14819910--14819958 Score: 64
Period size: 3 Copynumber: 16.0 Consensus size: 3
14819900 GATAAGTAGC
*
14819910 AAT AAT -AT AAGT AAT AAT AAT AAT AAT AAT AAT AGT AAT AAT AAAT
1 AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
14819956 AAT
1 AAT
14819959 GAAAGATGAC
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
2 2 0.05
3 33 0.80
4 6 0.15
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:14819928 original size:15 final size:16
Alignment explanation
Indices: 14819891--14819950 Score: 63
Period size: 15 Copynumber: 3.9 Consensus size: 16
14819881 AGCTATTATA
*
14819891 TAATAAT-ATGATAAG
1 TAATAATAATAATAAG
**
14819906 TAGCAATAAT-ATAAG
1 TAATAATAATAATAAG
14819921 TAATAATAATAATAA-
1 TAATAATAATAATAAG
*
14819936 TAATAATAGTAATAA
1 TAATAATAATAATAA
14819951 TAAATAATGA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
15 32 0.84
16 6 0.16
ACGTcount: A:0.58, C:0.02, G:0.08, T:0.32
Consensus pattern (16 bp):
TAATAATAATAATAAG
Found at i:14819953 original size:18 final size:17
Alignment explanation
Indices: 14819891--14819958 Score: 75
Period size: 18 Copynumber: 3.9 Consensus size: 17
14819881 AGCTATTATA
*
14819891 TAATAATATGATAAGTAG
1 TAATAATATAATAA-TAG
* *
14819909 CAATAATATAAGTAATAA
1 TAATAATATAA-TAATAG
14819927 TAATAATAATAATAATAG
1 TAATAAT-ATAATAATAG
14819945 TAATAATA-AATAAT
1 TAATAATATAATAAT
14819959 GAAAGATGAC
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
16 6 0.14
17 1 0.02
18 29 0.67
19 7 0.16
ACGTcount: A:0.59, C:0.01, G:0.07, T:0.32
Consensus pattern (17 bp):
TAATAATATAATAATAG
Found at i:14822805 original size:106 final size:106
Alignment explanation
Indices: 14822620--14822830 Score: 413
Period size: 106 Copynumber: 2.0 Consensus size: 106
14822610 TGGTCATTAT
14822620 TTCCTGGACTATCATGGTTCAAAGCAAGCCACACTTCCTTGGCAAAAGCACAAAAACATAGGACA
1 TTCCTGGACTATCATGGTTCAAAGCAAGCCACACTTCCTTGGCAAAAGCACAAAAACATAGGACA
*
14822685 TGGTTCACATCTTCAGCAGCTTGATAGGATCTAGGACACAC
66 TGGTTCACATCTTCAGCAGCTTGATAGCATCTAGGACACAC
14822726 TTCCTGGACTATCATGGTTCAAAGCAAGCCACACTTCCTTGGCAAAAGCACAAAAACATAGGACA
1 TTCCTGGACTATCATGGTTCAAAGCAAGCCACACTTCCTTGGCAAAAGCACAAAAACATAGGACA
14822791 TGGTTCACATCTTCAGCAGCTTGATAGCATCTAGGACACA
66 TGGTTCACATCTTCAGCAGCTTGATAGCATCTAGGACACA
14822831 GAGGATCATT
Statistics
Matches: 104, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
106 104 1.00
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (106 bp):
TTCCTGGACTATCATGGTTCAAAGCAAGCCACACTTCCTTGGCAAAAGCACAAAAACATAGGACA
TGGTTCACATCTTCAGCAGCTTGATAGCATCTAGGACACAC
Found at i:14825155 original size:14 final size:14
Alignment explanation
Indices: 14825111--14825200 Score: 99
Period size: 14 Copynumber: 6.4 Consensus size: 14
14825101 TCTAGTGTCC
14825111 AAGGTTTAAGGTCT
1 AAGGTTTAAGGTCT
* *
14825125 AAAGTCTAAGGTCT
1 AAGGTTTAAGGTCT
*
14825139 AAGGTCTAAGGTCT
1 AAGGTTTAAGGTCT
* * *
14825153 AAGGTTCAGGGTCC
1 AAGGTTTAAGGTCT
*
14825167 AAGGTTTAAGGCCT
1 AAGGTTTAAGGTCT
* *
14825181 AAGGTTTAGGGTTT
1 AAGGTTTAAGGTCT
14825195 AAGGTT
1 AAGGTT
14825201 CATGGTTCAA
Statistics
Matches: 62, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 62 1.00
ACGTcount: A:0.28, C:0.11, G:0.30, T:0.31
Consensus pattern (14 bp):
AAGGTTTAAGGTCT
Found at i:14825200 original size:7 final size:7
Alignment explanation
Indices: 14825111--14825199 Score: 81
Period size: 7 Copynumber: 12.7 Consensus size: 7
14825101 TCTAGTGTCC
*
14825111 AAGGTTT
1 AAGGTCT
14825118 AAGGTCT
1 AAGGTCT
*
14825125 AAAGTCT
1 AAGGTCT
14825132 AAGGTCT
1 AAGGTCT
14825139 AAGGTCT
1 AAGGTCT
14825146 AAGGTCT
1 AAGGTCT
14825153 AAGGT-T
1 AAGGTCT
* *
14825159 CAGGGTCC
1 -AAGGTCT
*
14825167 AAGGTTT
1 AAGGTCT
*
14825174 AAGGCCT
1 AAGGTCT
*
14825181 AAGGTTT
1 AAGGTCT
* *
14825188 AGGGTTT
1 AAGGTCT
14825195 AAGGT
1 AAGGT
14825200 TCATGGTTCA
Statistics
Matches: 66, Mismatches: 14, Indels: 4
0.79 0.17 0.05
Matches are distributed among these distances:
6 1 0.02
7 65 0.98
ACGTcount: A:0.28, C:0.11, G:0.30, T:0.30
Consensus pattern (7 bp):
AAGGTCT
Found at i:14825242 original size:7 final size:7
Alignment explanation
Indices: 14825232--14825266 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
14825222 CAAGTTTCAA
*
14825232 GGTCTAG
1 GGTCGAG
*
14825239 GGTCAAG
1 GGTCGAG
14825246 GGTCGAG
1 GGTCGAG
14825253 GGTCGAG
1 GGTCGAG
14825260 GGTCGAG
1 GGTCGAG
14825267 AGTTACAGGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.17, C:0.14, G:0.51, T:0.17
Consensus pattern (7 bp):
GGTCGAG
Found at i:14825245 original size:20 final size:21
Alignment explanation
Indices: 14825206--14825245 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
14825196 AGGTTCATGG
14825206 TTCAAGGTCTGAGGGCCAAGT
1 TTCAAGGTCTGAGGGCCAAGT
*
14825227 TTCAAGGTCT-AGGGTCAAG
1 TTCAAGGTCTGAGGGCCAAG
14825246 GGTCGAGGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (21 bp):
TTCAAGGTCTGAGGGCCAAGT
Found at i:14825254 original size:14 final size:14
Alignment explanation
Indices: 14825228--14825266 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
14825218 GGGCCAAGTT
*
14825228 TCAA-GGTCTAGGG
1 TCAAGGGTCGAGGG
14825241 TCAAGGGTCGAGGG
1 TCAAGGGTCGAGGG
*
14825255 TCGAGGGTCGAG
1 TCAAGGGTCGAG
14825267 AGTTACAGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 4 0.17
14 19 0.83
ACGTcount: A:0.21, C:0.15, G:0.46, T:0.18
Consensus pattern (14 bp):
TCAAGGGTCGAGGG
Found at i:14833820 original size:28 final size:28
Alignment explanation
Indices: 14833779--14833926 Score: 121
Period size: 27 Copynumber: 5.5 Consensus size: 28
14833769 ACACAACAGT
*
14833779 AATG-GAAAGTCTTTGTGGCGTATTCTG
1 AATGAGAAAGCCTTTGTGGCGTATTCTG
* * *
14833806 AATGAAAAATCCTTTGTGGTGTATT-TGG
1 AATGAGAAAGCCTTTGTGGCGTATTCT-G
* * *
14833834 AAT-AGAAAGCCTTTATGGTGTATTCTA
1 AATGAGAAAGCCTTTGTGGCGTATTCTG
* * *
14833861 AATG-GAAAGGCTTTGTGGCGTATTTTA
1 AATGAGAAAGCCTTTGTGGCGTATTCTG
* *
14833888 AAT-AGAAAGCTTTTGTGGCATATT-TAG
1 AATGAGAAAGCCTTTGTGGCGTATTCT-G
14833915 AATG-GAAAGCCT
1 AATGAGAAAGCCT
14833927 GTAATACCTC
Statistics
Matches: 97, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
26 1 0.01
27 75 0.77
28 21 0.22
ACGTcount: A:0.30, C:0.09, G:0.25, T:0.36
Consensus pattern (28 bp):
AATGAGAAAGCCTTTGTGGCGTATTCTG
Done.