Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53248092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1300000 characters in sequence are not A, C, G, or T
File 51 of 175
Found at i:14833884 original size:54 final size:54
Alignment explanation
Indices: 14833817--14833923 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 54
14833807 ATGAAAAATC
* * **
14833817 CTTTGTGGTGTATTTGGAATAGAAAGCCTTTATGGTGTATTCTA-AATGGAAAGG
1 CTTTGTGGCGTATTTGAAATAGAAAGCCTTTATGGCATATT-TAGAATGGAAAGG
* * *
14833871 CTTTGTGGCGTATTTTAAATAGAAAGCTTTTGTGGCATATTTAGAATGGAAAG
1 CTTTGTGGCGTATTTGAAATAGAAAGCCTTTATGGCATATTTAGAATGGAAAG
14833924 CCTGTAATAC
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
53 2 0.04
54 43 0.96
ACGTcount: A:0.29, C:0.07, G:0.26, T:0.37
Consensus pattern (54 bp):
CTTTGTGGCGTATTTGAAATAGAAAGCCTTTATGGCATATTTAGAATGGAAAGG
Found at i:14835292 original size:17 final size:17
Alignment explanation
Indices: 14835270--14835340 Score: 62
Period size: 17 Copynumber: 4.5 Consensus size: 17
14835260 TTGAGATGAA
14835270 AAGAAAGAGTAATGATT
1 AAGAAAGAGTAATGATT
14835287 AAG-AA-AG-AATG-TT
1 AAGAAAGAGTAATGATT
** * *
14835300 -CTAATGATTAATGATT
1 AAGAAAGAGTAATGATT
*
14835316 AAGAAAGATTAATGATT
1 AAGAAAGAGTAATGATT
14835333 AAGAAAGA
1 AAGAAAGA
14835341 ATGTTCTAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
13 3 0.07
14 5 0.12
15 6 0.14
16 4 0.10
17 24 0.57
ACGTcount: A:0.52, C:0.01, G:0.20, T:0.27
Consensus pattern (17 bp):
AAGAAAGAGTAATGATT
Found at i:14839023 original size:70 final size:70
Alignment explanation
Indices: 14838889--14839030 Score: 252
Period size: 68 Copynumber: 2.1 Consensus size: 70
14838879 TCAGGCCTCG
*
14838889 ATTCTAATAGGTTCATGTAGTCATTAATATGCTTTTTTTTTTCCGAGTATTATAGATATGTATAT
1 ATTCTAATAGGTTCATGTAGTCATTAATATGCTTTTCTTTTTCCGAGTATTATAGATATGTATAT
14838954 ATAAA
66 ATAAA
*
14838959 ATTCTAATAGGTTCATGTAGTCATTTATATGC-TTTCTTTTT-CGAGTATTATAGATATGTATAT
1 ATTCTAATAGGTTCATGTAGTCATTAATATGCTTTTCTTTTTCCGAGTATTATAGATATGTATAT
14839022 ATAAA
66 ATAAA
14839027 ATTC
1 ATTC
14839031 CATATCATCA
Statistics
Matches: 70, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
68 31 0.44
69 8 0.11
70 31 0.44
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.47
Consensus pattern (70 bp):
ATTCTAATAGGTTCATGTAGTCATTAATATGCTTTTCTTTTTCCGAGTATTATAGATATGTATAT
ATAAA
Found at i:14845040 original size:17 final size:17
Alignment explanation
Indices: 14845003--14845053 Score: 50
Period size: 17 Copynumber: 3.1 Consensus size: 17
14844993 TTATTTTAAA
* * *
14845003 TTAATATAATTATTATG
1 TTAATATTATTAATATT
14845020 TTAATATTATTAATATT
1 TTAATATTATTAATATT
* *
14845037 TTAA-ATTTTTTATATT
1 TTAATATTATTAATATT
14845053 T
1 T
14845054 ATATGATCAG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
16 11 0.38
17 18 0.62
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (17 bp):
TTAATATTATTAATATT
Found at i:14846697 original size:9 final size:9
Alignment explanation
Indices: 14846680--14846716 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
14846670 TGAGTTTTCG
14846680 AATTCGAAT
1 AATTCGAAT
*
14846689 AACTCGAAT
1 AATTCGAAT
14846698 AATTCGAAT
1 AATTCGAAT
14846707 AATTCGAAT
1 AATTCGAAT
14846716 A
1 A
14846717 TTAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:14847612 original size:5 final size:5
Alignment explanation
Indices: 14847602--14847627 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
14847592 GAACAAATAT
14847602 ATTCG ATTCG ATTCG ATTCG ATTCG A
1 ATTCG ATTCG ATTCG ATTCG ATTCG A
14847628 ATTCCATCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38
Consensus pattern (5 bp):
ATTCG
Found at i:14851504 original size:34 final size:34
Alignment explanation
Indices: 14851466--14851535 Score: 122
Period size: 34 Copynumber: 2.1 Consensus size: 34
14851456 CCTCACTCAT
* *
14851466 TCATCATTCTCTCCTCTCTCAAATCTCTTTGCTA
1 TCATCATTCTCTCATCTCTCAAATCTCTTAGCTA
14851500 TCATCATTCTCTCATCTCTCAAATCTCTTAGCTA
1 TCATCATTCTCTCATCTCTCAAATCTCTTAGCTA
14851534 TC
1 TC
14851536 TTTCCCCCTC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.20, C:0.34, G:0.03, T:0.43
Consensus pattern (34 bp):
TCATCATTCTCTCATCTCTCAAATCTCTTAGCTA
Found at i:14852336 original size:21 final size:22
Alignment explanation
Indices: 14852307--14852347 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
14852297 AGTTTATTTA
14852307 TGTTATAATTGTTAC-AAAATTG
1 TGTTATAATT-TTACTAAAATTG
14852329 TGTT-TAATTTTACTAAAAT
1 TGTTATAATTTTACTAAAAT
14852348 CTATTTCACT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 10 0.56
22 4 0.22
ACGTcount: A:0.37, C:0.05, G:0.10, T:0.49
Consensus pattern (22 bp):
TGTTATAATTTTACTAAAATTG
Found at i:14854681 original size:18 final size:17
Alignment explanation
Indices: 14854648--14854686 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
14854638 TTTTATAAAT
14854648 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
14854666 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
14854683 TGTG
1 TGTG
14854687 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:14854939 original size:23 final size:23
Alignment explanation
Indices: 14854912--14855033 Score: 190
Period size: 23 Copynumber: 5.3 Consensus size: 23
14854902 AGTGTTATTG
14854912 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
14854935 TTCAGTGGTAGCTACGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
14854958 ATCAGTGGTAGCTTCAGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* * *
14854981 TTTAGTGGTAGCTTCGGCTACGT
1 ATCAGTGGTAGCTTCGGCTACAT
14855004 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
14855027 ATCAGTG
1 ATCAGTG
14855034 TGGCACTTAT
Statistics
Matches: 87, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 87 1.00
ACGTcount: A:0.21, C:0.20, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:14860186 original size:26 final size:25
Alignment explanation
Indices: 14860155--14860205 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 25
14860145 ACTAATTTTC
*
14860155 TCAAAATTTTACCGGGGGTAAAATTG
1 TCAAAATTTTACC-GGGATAAAATTG
14860181 TCAAAATTTTACCGGGATAAAATTG
1 TCAAAATTTTACCGGGATAAAATTG
14860206 GGATGAGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (25 bp):
TCAAAATTTTACCGGGATAAAATTG
Found at i:14862108 original size:25 final size:25
Alignment explanation
Indices: 14861955--14862127 Score: 181
Period size: 25 Copynumber: 7.0 Consensus size: 25
14861945 GTACATGTAT
*
14861955 GCTCATACGAGCTGTA-AACGGTAA
1 GCTCATACGAGCTGAATAACGGTAA
* *
14861979 GCTC-TTCTGAGCTAAATAACGGTAA
1 GCTCATAC-GAGCTGAATAACGGTAA
* *
14862004 GCTCCTTCGAGCTGAATAACGGTAA
1 GCTCATACGAGCTGAATAACGGTAA
* *
14862029 GCTCCTTCGAGCTGAATAACGGTAA
1 GCTCATACGAGCTGAATAACGGTAA
* * * *
14862054 ACTCCTCCAAGCTGAATAACGGTAA
1 GCTCATACGAGCTGAATAACGGTAA
* *
14862079 GCTCATACGAGCTGAGTATCGGTAA
1 GCTCATACGAGCTGAATAACGGTAA
* *
14862104 GCTCATAAGAGCTGAA-ATCGGTAA
1 GCTCATACGAGCTGAATAACGGTAA
14862128 CCCTAATGAC
Statistics
Matches: 131, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
23 2 0.02
24 18 0.14
25 108 0.82
26 3 0.02
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.23
Consensus pattern (25 bp):
GCTCATACGAGCTGAATAACGGTAA
Found at i:14863260 original size:76 final size:74
Alignment explanation
Indices: 14863119--14863367 Score: 249
Period size: 76 Copynumber: 3.4 Consensus size: 74
14863109 AAAAAAGTCT
*
14863119 TTCTATTGTATTTTACATCAATAATATACTTATTTACAATCTAAGAAAAAAATTTAAAAATTGTT
1 TTCTATTGTATTTTACATCAATAATATACTTATTTACAATCTAAGAAAAAAAATTAAAAATTGTT
14863184 TGTATTGCA
66 TGTATTGCA
* *
14863193 TTCTTTTGTATTTTATATCAATAATATATACTTATTTACAATCTACA-AAAAAAAATTAATAAA-
1 TTCTATTGTATTTTACATCAAT-A-ATATACTTATTTACAATCTA-AGAAAAAAAATTAA-AAAT
*
14863256 TGTTTGTATTGTA
62 TGTTTGTATTGCA
** * * * * **
14863269 TTCTATCATATGCTTT--TTAAATAATATACTTATTTACAATCTACGAGAAATGA--AAAAATTG
1 TTCTATTGTAT--TTTACATCAATAATATACTTATTTACAATCTAAGAAAAAAAATTAAAAATTG
* *
14863330 TTTATATTGTA
64 TTTGTATTGCA
* * *
14863341 TTATACTATATTTTACATCAATAATAT
1 TTCTATTGTATTTTACATCAATAATAT
14863368 GTATATTTAT
Statistics
Matches: 146, Mismatches: 19, Indels: 22
0.78 0.10 0.12
Matches are distributed among these distances:
70 3 0.02
71 3 0.02
72 31 0.21
74 45 0.31
75 2 0.01
76 55 0.38
77 4 0.03
78 3 0.02
ACGTcount: A:0.40, C:0.09, G:0.06, T:0.45
Consensus pattern (74 bp):
TTCTATTGTATTTTACATCAATAATATACTTATTTACAATCTAAGAAAAAAAATTAAAAATTGTT
TGTATTGCA
Found at i:14869838 original size:16 final size:16
Alignment explanation
Indices: 14869813--14869853 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
14869803 TATCGATTAT
*
14869813 AATTAGACATTTAACC
1 AATTATACATTTAACC
14869829 AATTATACATTTAACC
1 AATTATACATTTAACC
14869845 AATTATACA
1 AATTATACA
14869854 AAATTCATTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.46, C:0.17, G:0.02, T:0.34
Consensus pattern (16 bp):
AATTATACATTTAACC
Found at i:14870552 original size:16 final size:16
Alignment explanation
Indices: 14870531--14870562 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14870521 GTTTCGTTGC
*
14870531 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
14870547 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
14870563 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:14874092 original size:5 final size:5
Alignment explanation
Indices: 14874082--14874112 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
14874072 GTGTGACCCT
*
14874082 GAAAA GAAAA GAAAA GGAAA GAAAA GAAAA G
1 GAAAA GAAAA GAAAA GAAAA GAAAA GAAAA G
14874113 TTTCAACTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (5 bp):
GAAAA
Found at i:14880131 original size:16 final size:15
Alignment explanation
Indices: 14880106--14880139 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
14880096 AAAGTTGATA
*
14880106 ATAATTAATATATATT
1 ATAATAAATATA-ATT
14880122 ATAATAAATATAATT
1 ATAATAAATATAATT
14880137 ATA
1 ATA
14880140 TACTTGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:14884104 original size:51 final size:51
Alignment explanation
Indices: 14883944--14884168 Score: 197
Period size: 51 Copynumber: 4.4 Consensus size: 51
14883934 TTTAGTGGTT
* * ** * *
14883944 TGCACATAGTACCAC-CGATGTGACCATTGTCATCTGATACACGTAGTAGCC
1 TGCACATAGTACTACAC-ACGTGACCAAGGTCATCCGATACACATAGTAGCC
* * * * * * * *
14883995 TACACATAGTACTACAGACGTGATCAA-G-CTTTCTAGTTCACATATTAGCC
1 TGCACATAGTACTACACACGTGACCAAGGTCATCCGA-TACACATAGTAGCC
*
14884045 TGCACATAGTACTACACACGTGACCAAGGTCATCCGGTACACATAGTAGCC
1 TGCACATAGTACTACACACGTGACCAAGGTCATCCGATACACATAGTAGCC
* *** **
14884096 TGCACATAGTACTACACATGTGACCATTATCTAT-CGATACATGTAGTAGCC
1 TGCACATAGTACTACACACGTGACCAAGGTC-ATCCGATACACATAGTAGCC
*
14884147 TGCACTTAGTACTACACACGTG
1 TGCACATAGTACTACACACGTG
14884169 TTCATAGGTA
Statistics
Matches: 138, Mismatches: 31, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
49 3 0.02
50 36 0.26
51 94 0.68
52 5 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (51 bp):
TGCACATAGTACTACACACGTGACCAAGGTCATCCGATACACATAGTAGCC
Found at i:14885084 original size:71 final size:71
Alignment explanation
Indices: 14885000--14885141 Score: 284
Period size: 71 Copynumber: 2.0 Consensus size: 71
14884990 CCGTAAAAAA
14885000 ATATTAAAAACGGGGCTTGGGTGCACTTACTATAAGGCTTGGAAGCTTGAAAACCCAAACTATGG
1 ATATTAAAAACGGGGCTTGGGTGCACTTACTATAAGGCTTGGAAGCTTGAAAACCCAAACTATGG
14885065 CTTCCC
66 CTTCCC
14885071 ATATTAAAAACGGGGCTTGGGTGCACTTACTATAAGGCTTGGAAGCTTGAAAACCCAAACTATGG
1 ATATTAAAAACGGGGCTTGGGTGCACTTACTATAAGGCTTGGAAGCTTGAAAACCCAAACTATGG
14885136 CTTCCC
66 CTTCCC
14885142 CCTTGTAAAA
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 71 1.00
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (71 bp):
ATATTAAAAACGGGGCTTGGGTGCACTTACTATAAGGCTTGGAAGCTTGAAAACCCAAACTATGG
CTTCCC
Found at i:14896832 original size:40 final size:40
Alignment explanation
Indices: 14896767--14897017 Score: 277
Period size: 40 Copynumber: 6.3 Consensus size: 40
14896757 AGATAAATCG
* * * * **
14896767 AACACACCAGACAGAGGCTCGTAAGAGTTGATCCAGCTGA
1 AACACACCAAACAGAAGCTCATAAGAGTTGATCCAACCAA
*
14896807 AACACACCAAACAAAAGCTCATAAGAGTTGATCCAACCAA
1 AACACACCAAACAGAAGCTCATAAGAGTTGATCCAACCAA
* ** * * * * *
14896847 AAAATGCCAAATAAAAGCTCATAAGAGTTGATCCGATCGA
1 AACACACCAAACAGAAGCTCATAAGAGTTGATCCAACCAA
* * *
14896887 AACACACTAAACAGAAGCTCATAAGAGCTGATTCAACCAA
1 AACACACCAAACAGAAGCTCATAAGAGTTGATCCAACCAA
* * *
14896927 AACACGCTAAACAGAAGCTCATAAGAGCTGATCCAACCAA
1 AACACACCAAACAGAAGCTCATAAGAGTTGATCCAACCAA
* * *
14896967 AACACGCCAAACAGAAGCTCATGAGAGTTGATCCAACCAG
1 AACACACCAAACAGAAGCTCATAAGAGTTGATCCAACCAA
*
14897007 AACACGCCAAA
1 AACACACCAAA
14897018 TAGAGAGTAT
Statistics
Matches: 180, Mismatches: 31, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 180 1.00
ACGTcount: A:0.44, C:0.25, G:0.16, T:0.14
Consensus pattern (40 bp):
AACACACCAAACAGAAGCTCATAAGAGTTGATCCAACCAA
Found at i:14898015 original size:10 final size:10
Alignment explanation
Indices: 14898000--14898027 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
14897990 AACATATATC
14898000 AAATTAAAGG
1 AAATTAAAGG
14898010 AAATTAAAGG
1 AAATTAAAGG
14898020 AAATTAAA
1 AAATTAAA
14898028 ACTTAAACGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.14, T:0.21
Consensus pattern (10 bp):
AAATTAAAGG
Found at i:14898531 original size:168 final size:169
Alignment explanation
Indices: 14898313--14898652 Score: 456
Period size: 168 Copynumber: 2.0 Consensus size: 169
14898303 TCTTAGGGTG
* * * * *
14898313 TTACCATTTGAACTTTATAAATCGCTTATATAACATAAATTATCAAATCAAAAACCTTTTT-A-A
1 TTACCACTTGAACATAATAAATCGATTATATAACATAAATCATCAAATCAAAAACCTTTTTAACA
14898376 TATTTGACTCGTAAATATTAAATAATAATATTTACAAACTTACTCGTC-AGATTTGGTGGCCCTG
66 TATTTGACTCGTAAATATTAAATAATAATATTTACAAACTTACTCGTCAAG-TTT-GTGGCCCTG
* * *
14898440 AAACTACTATTTCCGACACCACTGAAAAACGGGCTGTTACA
129 AAACCACTATTTCCGACAACACTGAAAAACAGGCTGTTACA
14898481 TTACCACTTGAACATAATAAATC-ATTCATATAACATAAATCA-CTAAATCAAAAACCTTTTTAA
1 TTACCACTTGAACATAATAAATCGATT-ATATAACATAAATCATC-AAATCAAAAACCTTTTT--
* * **
14898544 AACCATGTTTGACTTGTAAATATTAAATAATAATATTTATGAACTTACTCGTCAAGTTTGTGGCC
62 AA-CATATTTGACTCGTAAATATTAAATAATAATATTTACAAACTTACTCGTCAAGTTTGTGGCC
* *
14898609 CTGAAACCATTATTTTCGACAACACTGAAAAACAGGCTGTTACA
126 CTGAAACCACTATTTCCGACAACACTGAAAAACAGGCTGTTACA
14898653 ACTTCCCCCC
Statistics
Matches: 150, Mismatches: 14, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
167 3 0.02
168 51 0.34
171 1 0.01
172 45 0.30
173 48 0.32
174 2 0.01
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (169 bp):
TTACCACTTGAACATAATAAATCGATTATATAACATAAATCATCAAATCAAAAACCTTTTTAACA
TATTTGACTCGTAAATATTAAATAATAATATTTACAAACTTACTCGTCAAGTTTGTGGCCCTGAA
ACCACTATTTCCGACAACACTGAAAAACAGGCTGTTACA
Found at i:14900357 original size:28 final size:28
Alignment explanation
Indices: 14900314--14900380 Score: 116
Period size: 28 Copynumber: 2.4 Consensus size: 28
14900304 TATACGACAT
*
14900314 GCAGTAACAGTTTGAGCCTTAGCCCTAA
1 GCAGTAACAGTCTGAGCCTTAGCCCTAA
*
14900342 GTAGTAACAGTCTGAGCCTTAGCCCTAA
1 GCAGTAACAGTCTGAGCCTTAGCCCTAA
14900370 GCAGTAACAGT
1 GCAGTAACAGT
14900381 GTAATGTGAG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (28 bp):
GCAGTAACAGTCTGAGCCTTAGCCCTAA
Found at i:14900821 original size:27 final size:26
Alignment explanation
Indices: 14900774--14901049 Score: 268
Period size: 27 Copynumber: 10.2 Consensus size: 26
14900764 GGTATAACAG
**
14900774 TCATTTTACCCTATGGGGGTATTTCGA
1 TCATTTTACCCT-TCAGGGTATTTCGA
*
14900801 TCATTTTACCCTTCAGTGGTATTTCGT
1 TCATTTTACCCTTCAG-GGTATTTCGA
* * * *
14900828 TCATTTTACCCTTCGAAGGCATTTTGG
1 TCATTTTACCCTTC-AGGGTATTTCGA
* *
14900855 TCATTTTTACCCTTTAGGAGTATTTCGG
1 TCA-TTTTACCCTTCAGG-GTATTTCGA
* *
14900883 TCA-TTTACCCTTCGAGGATATTTCAA
1 TCATTTTACCCTTC-AGGGTATTTCGA
* *
14900909 TCATTTTACTCTTCGAGGGTATTTCGT
1 TCATTTTACCCTTC-AGGGTATTTCGA
*
14900936 TCATTTTACCCTTAAAGGGTATTTCGA
1 TCATTTTACCCTT-CAGGGTATTTCGA
14900963 TCATTTTACCCTTCAGGGGTATTTCGA
1 TCATTTTACCCTTCA-GGGTATTTCGA
* * *
14900990 TCATTTTACCCTTCGAGTGTATTCCGG
1 TCATTTTACCCTTC-AGGGTATTTCGA
*
14901017 TCATTTTACCCTTCAAGGGCATTTC-A
1 TCATTTTACCCTTC-AGGGTATTTCGA
14901043 GTCATTT
1 -TCATTT
14901050 GCCCATGAAT
Statistics
Matches: 208, Mismatches: 31, Indels: 20
0.80 0.12 0.08
Matches are distributed among these distances:
26 21 0.10
27 165 0.79
28 22 0.11
ACGTcount: A:0.19, C:0.21, G:0.17, T:0.43
Consensus pattern (26 bp):
TCATTTTACCCTTCAGGGTATTTCGA
Found at i:14900833 original size:54 final size:53
Alignment explanation
Indices: 14900774--14901049 Score: 306
Period size: 54 Copynumber: 5.1 Consensus size: 53
14900764 GGTATAACAG
*
14900774 TCATTTTACCCTAT-GGGGGTATTTCGATCATTTTACCCTTCAGTGGTATTTCGT
1 TCATTTTACCCT-TCGAGGGTATTTCGATCATTTTACCCTTCAG-GGTATTTCGT
* * * * * *
14900828 TCATTTTACCCTTCGAAGGCATTTTGGTCATTTTTACCCTTTAGGAGTATTTCGG
1 TCATTTTACCCTTCGAGGGTATTTCGATCA-TTTTACCCTTCAGG-GTATTTCGT
* * *
14900883 TCA-TTTACCCTTCGAGGATATTTCAATCATTTTACTCTTCGAGGGTATTTCGT
1 TCATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTC-AGGGTATTTCGT
** *
14900936 TCATTTTACCCTTAAAGGGTATTTCGATCATTTTACCCTTCAGGGGTATTTCGA
1 TCATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTCA-GGGTATTTCGT
* * * *
14900990 TCATTTTACCCTTCGAGTGTATTCCGGTCATTTTACCCTTCAAGGGCATTTCAG-
1 TCATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTC-AGGGTATTTC-GT
14901044 TCATTT
1 TCATTT
14901050 GCCCATGAAT
Statistics
Matches: 186, Mismatches: 28, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
53 22 0.12
54 139 0.75
55 25 0.13
ACGTcount: A:0.19, C:0.21, G:0.17, T:0.43
Consensus pattern (53 bp):
TCATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTCAGGGTATTTCGT
Found at i:14901035 original size:81 final size:79
Alignment explanation
Indices: 14900773--14901049 Score: 317
Period size: 81 Copynumber: 3.4 Consensus size: 79
14900763 GGGTATAACA
** * *
14900773 GTCATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTTCAGTGGTATTTCGTTCATTTTACC
1 GTCATTTTACCCT-TAAGGGTATTTCGATCATTTTACCCTTCAGGGGTATTTCGATCATTTTACC
* *
14900838 CTTCGAAGGCATTTTG
65 CTTCG-AGGTATTTCG
* * * *
14900854 GTCATTTTTACCCTTTAGGAGTATTTCGGTCA-TTTACCCTTC-GAGGATATTTCAATCATTTTA
1 GTCA-TTTTACCCTTAAGG-GTATTTCGATCATTTTACCCTTCAG-GGGTATTTCGATCATTTTA
*
14900917 CTCTTCGAGGGTATTTCG
63 CCCTTCGA-GGTATTTCG
*
14900935 TTCATTTTACCCTTAAAGGGTATTTCGATCATTTTACCCTTCAGGGGTATTTCGATCATTTTACC
1 GTCATTTTACCCTT-AAGGGTATTTCGATCATTTTACCCTTCAGGGGTATTTCGATCATTTTACC
*
14901000 CTTCGAGTGTATTCCG
65 CTTCGAG-GTATTTCG
*
14901016 GTCATTTTACCCTTCAAGGGCATTTC-AGTCATTT
1 GTCATTTTACCCTT-AAGGGTATTTCGA-TCATTT
14901050 GCCCATGAAT
Statistics
Matches: 167, Mismatches: 20, Indels: 18
0.81 0.10 0.09
Matches are distributed among these distances:
80 25 0.15
81 121 0.72
82 21 0.13
ACGTcount: A:0.19, C:0.21, G:0.17, T:0.43
Consensus pattern (79 bp):
GTCATTTTACCCTTAAGGGTATTTCGATCATTTTACCCTTCAGGGGTATTTCGATCATTTTACCC
TTCGAGGTATTTCG
Found at i:14921637 original size:27 final size:27
Alignment explanation
Indices: 14921607--14921919 Score: 245
Period size: 27 Copynumber: 11.3 Consensus size: 27
14921597 GTTATAACTG
*
14921607 TCATTTTACCCTACGAGGGTATTTCGA
1 TCATTTTACCCTTCGAGGGTATTTCGA
* *
14921634 TCATTTTACCCTTTGAGGGCATTTTGATCATTTCGG
1 TCATTTTACCCTTCGA-GG------G-T-ATTTCGA
* * *
14921670 TCATTTTATCCTTCGGGGGTATTT-TA
1 TCATTTTACCCTTCGAGGGTATTTCGA
** * * *
14921696 GTCATTTTACCCTTTAAGGATATTTTGG
1 -TCATTTTACCCTTCGAGGGTATTTCGA
* *
14921724 TAATTTTACCTTTCGAGGGTATTTCGA
1 TCATTTTACCCTTCGAGGGTATTTCGA
* * * *
14921751 TAATTTTACCCTTCGGGGGTATTTTGG
1 TCATTTTACCCTTCGAGGGTATTTCGA
* * *
14921778 TCATTTTACCCTTCAAGGGTATTTTGG
1 TCATTTTACCCTTCGAGGGTATTTCGA
* * *
14921805 TCATTTTACCCTTTGGGGGCATTTCGA
1 TCATTTTACCCTTCGAGGGTATTTCGA
*
14921832 TCATTTTACCCTTCGAGGGTATTTCAA
1 TCATTTTACCCTTCGAGGGTATTTCGA
* *
14921859 TCATTTTACCATTCAAGGGTATTTC-A
1 TCATTTTACCCTTCGAGGGTATTTCGA
* *
14921885 GTCATTTTACCCTTCAAGGGCATTTCTG-
1 -TCATTTTACCCTTCGAGGGTATTTC-GA
14921913 TCATTTT
1 TCATTTT
14921920 CCCATGAATC
Statistics
Matches: 229, Mismatches: 43, Indels: 28
0.76 0.14 0.09
Matches are distributed among these distances:
26 1 0.00
27 201 0.88
28 3 0.01
29 1 0.00
34 1 0.00
35 3 0.01
36 19 0.08
ACGTcount: A:0.19, C:0.19, G:0.18, T:0.44
Consensus pattern (27 bp):
TCATTTTACCCTTCGAGGGTATTTCGA
Found at i:14921694 original size:36 final size:36
Alignment explanation
Indices: 14921627--14921702 Score: 91
Period size: 36 Copynumber: 2.1 Consensus size: 36
14921617 CTACGAGGGT
*
14921627 ATTTCGATCATTTTACCCTTTGAGGGCATTTT-GATC
1 ATTTCGATCATTTTACCCTTCGAGGGCATTTTAG-TC
* * * *
14921663 ATTTCGGTCATTTTATCCTTCGGGGGTATTTTAGTC
1 ATTTCGATCATTTTACCCTTCGAGGGCATTTTAGTC
14921699 ATTT
1 ATTT
14921703 TACCCTTTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
36 33 0.97
37 1 0.03
ACGTcount: A:0.17, C:0.17, G:0.18, T:0.47
Consensus pattern (36 bp):
ATTTCGATCATTTTACCCTTCGAGGGCATTTTAGTC
Found at i:14921765 original size:81 final size:81
Alignment explanation
Indices: 14921662--14921919 Score: 331
Period size: 81 Copynumber: 3.2 Consensus size: 81
14921652 GCATTTTGAT
* * * * *
14921662 CATTTCGGTCATTTTATCCTTCGGGGGTATTTTAGTCATTTTACCCTTTAAGGATATTTTGGTAA
1 CATTTCGATCATTTTACCCTTCGGGGGTATTTTAGTCATTTTACCCTTCAAGGGTATTTTGGTCA
14921727 TTTTACCTTTCGAGGG
66 TTTTACCTTTCGAGGG
* * *
14921743 TATTTCGATAATTTTACCCTTCGGGGGTATTTTGGTCATTTTACCCTTCAAGGGTATTTTGGTCA
1 CATTTCGATCATTTTACCCTTCGGGGGTATTTTAGTCATTTTACCCTTCAAGGGTATTTTGGTCA
*
14921808 TTTTACCCTTT-GGGGG
66 TTTTA-CCTTTCGAGGG
* * * * **
14921824 CATTTCGATCATTTTACCCTTCGAGGGTATTTCAATCATTTTACCATTCAAGGGTATTTCAGTCA
1 CATTTCGATCATTTTACCCTTCGGGGGTATTTTAGTCATTTTACCCTTCAAGGGTATTTTGGTCA
* *
14921889 TTTTACCCTTCAAGGG
66 TTTTACCTTTCGAGGG
14921905 CATTTCTG-TCATTTT
1 CATTTC-GATCATTTT
14921920 CCCATGAATC
Statistics
Matches: 153, Mismatches: 21, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
80 4 0.03
81 143 0.93
82 6 0.04
ACGTcount: A:0.19, C:0.19, G:0.18, T:0.44
Consensus pattern (81 bp):
CATTTCGATCATTTTACCCTTCGGGGGTATTTTAGTCATTTTACCCTTCAAGGGTATTTTGGTCA
TTTTACCTTTCGAGGG
Found at i:14924244 original size:29 final size:30
Alignment explanation
Indices: 14924211--14924402 Score: 137
Period size: 30 Copynumber: 6.4 Consensus size: 30
14924201 AGCTAACAAT
* *
14924211 TATGAGAAGGGATGGTGATGACCATC-AACA
1 TATGAAAAGGGATGGTGACGACCATCGAA-A
*
14924241 -ATGAAAAGGGATGCTGACGACCATCGAAA
1 TATGAAAAGGGATGGTGACGACCATCGAAA
* *** *
14924270 TATGAAAAGGGATGGCT-TCGGTTATCGAAC
1 TATGAAAAGGGATGG-TGACGACCATCGAAA
* ** ***
14924300 TATGAAAAGGGATAGCT-TTGGTTATC-AAA
1 TATGAAAAGGGAT-GGTGACGACCATCGAAA
14924329 TTATGAAAAGGGATGGTGACGACCATCGAACA
1 -TATGAAAAGGGATGGTGACGACCATCGAA-A
* *
14924361 -ATGACAAGGGATGGTGACAACCATC-AAA
1 TATGAAAAGGGATGGTGACGACCATCGAAA
14924389 TTATGAAAAGGGAT
1 -TATGAAAAGGGAT
14924403 AGCTTTGGCT
Statistics
Matches: 131, Mismatches: 21, Indels: 20
0.76 0.12 0.12
Matches are distributed among these distances:
28 1 0.01
29 29 0.22
30 96 0.73
31 4 0.03
32 1 0.01
ACGTcount: A:0.38, C:0.13, G:0.28, T:0.21
Consensus pattern (30 bp):
TATGAAAAGGGATGGTGACGACCATCGAAA
Found at i:14924357 original size:60 final size:61
Alignment explanation
Indices: 14924208--14924402 Score: 195
Period size: 60 Copynumber: 3.3 Consensus size: 61
14924198 TCCAGCTAAC
* *
14924208 AATTATGAGAAGGGATGGTGATGACCATC-AACAATGAAAAGGGATGCTGACGACCATCGA
1 AATTATGAAAAGGGATGGTGACGACCATCGAACAATGAAAAGGGATGCTGACGACCATCGA
* *** * ** ***
14924268 AA-TATGAAAAGGGATGGCT-TCGGTTATCGAACTATGAAAAGGGATAGCT-TTGGTTATC-A
1 AATTATGAAAAGGGATGG-TGACGACCATCGAACAATGAAAAGGGAT-GCTGACGACCATCGA
* * *
14924327 AATTATGAAAAGGGATGGTGACGACCATCGAACAATGACAAGGGATGGTGACAACCATC-A
1 AATTATGAAAAGGGATGGTGACGACCATCGAACAATGAAAAGGGATGCTGACGACCATCGA
14924387 AATTATGAAAAGGGAT
1 AATTATGAAAAGGGAT
14924403 AGCTTTGGCT
Statistics
Matches: 104, Mismatches: 25, Indels: 12
0.74 0.18 0.09
Matches are distributed among these distances:
59 24 0.23
60 77 0.74
61 3 0.03
ACGTcount: A:0.38, C:0.13, G:0.27, T:0.22
Consensus pattern (61 bp):
AATTATGAAAAGGGATGGTGACGACCATCGAACAATGAAAAGGGATGCTGACGACCATCGA
Found at i:14924394 original size:90 final size:90
Alignment explanation
Indices: 14924241--14924410 Score: 227
Period size: 90 Copynumber: 1.9 Consensus size: 90
14924231 ACCATCAACA
* **** *
14924241 ATGAAAAGGGATGCTGACGACCATCGAAATATGAAAAGGGATGGCTTCGGTTATCGAACTATGAA
1 ATGAAAAGGGATGCTGACGACCATCGAAATATGAAAAGGGATGGCTACAACCATCAAACTATGAA
14924306 AAGGGATAGCTTTGGTTATCAAATT
66 AAGGGATAGCTTTGGTTATCAAATT
* * *
14924331 ATGAAAAGGGATGGTGACGACCATCGAACA-ATGACAAGGGATGG-TGACAACCATCAAATTATG
1 ATGAAAAGGGATGCTGACGACCATCGAA-ATATGAAAAGGGATGGCT-ACAACCATCAAACTATG
14924394 AAAAGGGATAGCTTTGG
64 AAAAGGGATAGCTTTGG
14924411 CTTTTGAACT
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
89 1 0.01
90 67 0.97
91 1 0.01
ACGTcount: A:0.37, C:0.13, G:0.28, T:0.22
Consensus pattern (90 bp):
ATGAAAAGGGATGCTGACGACCATCGAAATATGAAAAGGGATGGCTACAACCATCAAACTATGAA
AAGGGATAGCTTTGGTTATCAAATT
Found at i:14924424 original size:90 final size:90
Alignment explanation
Indices: 14924241--14924429 Score: 222
Period size: 90 Copynumber: 2.1 Consensus size: 90
14924231 ACCATCAACA
* **** *
14924241 ATGAAAAGGGATGCTGACGACCATCGAAATATGAAAAGGGATGGCTTCGGTTATCGAACTATGAA
1 ATGAAAAGGGATGCTGACGACCATCGAAATATGAAAAGGGATGGCTACAACCATCAAACTATGAA
*
14924306 AAGGGATAGCTTTGGTTATCAAATT
66 AAGGGATAGCTTTGGTTATCAAACT
* * *
14924331 ATGAAAAGGGATGGTGACGACCATCGAACA-ATGACAAGGGATGG-TGACAACCATCAAATTATG
1 ATGAAAAGGGATGCTGACGACCATCGAA-ATATGAAAAGGGATGGCT-ACAACCATCAAACTATG
**
14924394 AAAAGGGATAGCTTTGGCTT-TTGAACT
64 AAAAGGGATAGCTTTGG-TTATCAAACT
14924421 ATGAAAAGG
1 ATGAAAAGG
14924430 TATAACTTCA
Statistics
Matches: 84, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
89 1 0.01
90 80 0.95
91 3 0.04
ACGTcount: A:0.37, C:0.13, G:0.27, T:0.23
Consensus pattern (90 bp):
ATGAAAAGGGATGCTGACGACCATCGAAATATGAAAAGGGATGGCTACAACCATCAAACTATGAA
AAGGGATAGCTTTGGTTATCAAACT
Found at i:14927693 original size:5 final size:5
Alignment explanation
Indices: 14927685--14927709 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
14927675 ACAAAAACAA
14927685 AAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT
14927710 CACATAATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:14932051 original size:21 final size:21
Alignment explanation
Indices: 14932011--14932063 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
14932001 TGAAAAGTGT
* *
14932011 TGTGGCTGCATCTGATTTTGG
1 TGTGGATGCATCTGACTTTGG
* *
14932032 TGTGGATGCATCTGGCTTTGT
1 TGTGGATGCATCTGACTTTGG
*
14932053 TTTGGATGCAT
1 TGTGGATGCAT
14932064 TTGAGTGTGC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.11, C:0.13, G:0.32, T:0.43
Consensus pattern (21 bp):
TGTGGATGCATCTGACTTTGG
Found at i:14938961 original size:447 final size:447
Alignment explanation
Indices: 14938127--14939024 Score: 1589
Period size: 447 Copynumber: 2.0 Consensus size: 447
14938117 GGTACGGACA
*
14938127 AGTTACTCCCTTGAGAGATTAGATGAATTATACATTTCTTAGATTGTCAGATTGCACGGAGTACC
1 AGTTACTCCCTTGAGAGATTAGATGAATTATACATTTATTAGATTGTCAGATTGCACGGAGTACC
**
14938192 AGTTTCCATCATTTTGAATAGAGATTCGCGATTTGTGTCAAGATTTTGGAAAAAGTTACAGGAAG
66 AGTTTCCATCATTTTGAATAGAGAACCGCGATTTGTGTCAAGATTTTGGAAAAAGTTACAGGAAG
*
14938257 CTCTTGGTATGCGGTTGCATTTTAGAACTGAATTTCATCCTCAGACCGACGATTAGTCTGAGCGA
131 CTCTTGGTATGCGGTTGCATTTTAGAACTGAATTTCATCCTCAGACCGACGATCAGTCTGAGCGA
* *
14938322 GTAATTTAGATACTCGAGGATATGCTTTGTTGTTATGTATTAGAGTTCGAACGCAGCTGGGAGAA
196 GTAATTTAGATACTCGAGGATATGCTTTGTTGTTATGTATTAGAGTTCAAACGCAGCTCGGAGAA
*
14938387 ATATTTTCCATTGGTTGAATTCACGTAAAATAACAGTTATCAGTCGAGCGTAAAGATGGCACCAT
261 ATATTTTCCATTGGTTGAATTCACATAAAATAACAGTTATCAGTCGAGCGTAAAGATGGCACCAT
*
14938452 ATGAAGCTCTGTATGGTCGTAAATGCCAAAATCTGTTACACTAGACTAAGATCAGTGAGAAAAAG
326 ATGAAGCTCTATATGGTCGTAAATGCCAAAATCTGTTACACTAGACTAAGATCAGTGAGAAAAAG
* *
14938517 ATACACGTGGTTAATTTGATTCGTGAGACTGAAGAAAAAGTAAAAGTGAGACGAGAT
391 ATACACATGGTTAATTTGATACGTGAGACTGAAGAAAAAGTAAAAGTGAGACGAGAT
14938574 AGTTACTCCCTTGAGAGATTAGATGAATTATACATTTATTAGATTGTCAGATTGCACGGAGTACC
1 AGTTACTCCCTTGAGAGATTAGATGAATTATACATTTATTAGATTGTCAGATTGCACGGAGTACC
*
14938639 AGTTTCCATCATTTTGAATAGAGAACCGTGATTTGTGTCAAGATTTTGGAAAAAGTTACAGGAAG
66 AGTTTCCATCATTTTGAATAGAGAACCGCGATTTGTGTCAAGATTTTGGAAAAAGTTACAGGAAG
* * *
14938704 CTCTTGGTATGCGGTTGCATTTTAGAACTGCATTTCGTCCTCAGACTGACGATCAGTCTGAGCGA
131 CTCTTGGTATGCGGTTGCATTTTAGAACTGAATTTCATCCTCAGACCGACGATCAGTCTGAGCGA
* *
14938769 GTAATTTAGATACTCGAGGATATGCTTTTTTGTTTTGTATTAGAGTTCAAACGCAGCTCGGAGAA
196 GTAATTTAGATACTCGAGGATATGCTTTGTTGTTATGTATTAGAGTTCAAACGCAGCTCGGAGAA
* * * *
14938834 ATATTTTCCGTTGGTTGAATTCACATAAAATAACAGTTATTAGTTGAGCGTAAAGATGGCACCGT
261 ATATTTTCCATTGGTTGAATTCACATAAAATAACAGTTATCAGTCGAGCGTAAAGATGGCACCAT
*
14938899 ATGAAGCTCTATATGGTCGTAAATGCCAAAATCTGTTACACTAGACTGAGATCAGTGAGAAAAAG
326 ATGAAGCTCTATATGGTCGTAAATGCCAAAATCTGTTACACTAGACTAAGATCAGTGAGAAAAAG
**
14938964 ATACACATGGTTAATTTGATACGTGAGACTGAAGAAAAAGTAAAAGTGATCCGAGAT
391 ATACACATGGTTAATTTGATACGTGAGACTGAAGAAAAAGTAAAAGTGAGACGAGAT
14939021 AGTT
1 AGTT
14939025 TGAAATCAGC
Statistics
Matches: 428, Mismatches: 23, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
447 428 1.00
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.31
Consensus pattern (447 bp):
AGTTACTCCCTTGAGAGATTAGATGAATTATACATTTATTAGATTGTCAGATTGCACGGAGTACC
AGTTTCCATCATTTTGAATAGAGAACCGCGATTTGTGTCAAGATTTTGGAAAAAGTTACAGGAAG
CTCTTGGTATGCGGTTGCATTTTAGAACTGAATTTCATCCTCAGACCGACGATCAGTCTGAGCGA
GTAATTTAGATACTCGAGGATATGCTTTGTTGTTATGTATTAGAGTTCAAACGCAGCTCGGAGAA
ATATTTTCCATTGGTTGAATTCACATAAAATAACAGTTATCAGTCGAGCGTAAAGATGGCACCAT
ATGAAGCTCTATATGGTCGTAAATGCCAAAATCTGTTACACTAGACTAAGATCAGTGAGAAAAAG
ATACACATGGTTAATTTGATACGTGAGACTGAAGAAAAAGTAAAAGTGAGACGAGAT
Found at i:14950513 original size:24 final size:24
Alignment explanation
Indices: 14950481--14950549 Score: 95
Period size: 24 Copynumber: 2.9 Consensus size: 24
14950471 ACAAAGATTT
14950481 TTATACTAATAAATGAC-AAATATA
1 TTATACTAATAAATG-CTAAATATA
* *
14950505 TTATGCTAATATATGCTAAATATA
1 TTATACTAATAAATGCTAAATATA
*
14950529 TTATACTAATAAATACTAAAT
1 TTATACTAATAAATGCTAAAT
14950550 CTTCTAGAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
23 1 0.03
24 38 0.97
ACGTcount: A:0.49, C:0.09, G:0.04, T:0.38
Consensus pattern (24 bp):
TTATACTAATAAATGCTAAATATA
Found at i:14972145 original size:27 final size:26
Alignment explanation
Indices: 14972099--14972149 Score: 84
Period size: 27 Copynumber: 1.9 Consensus size: 26
14972089 TTTCTTTTTG
14972099 TTACTTAAGTTTAATATTATTTAATA
1 TTACTTAAGTTTAATATTATTTAATA
*
14972125 TTACTTAGGTTTTAATATTATTTAA
1 TTACTTAAG-TTTAATATTATTTAA
14972150 CATAATTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 8 0.35
27 15 0.65
ACGTcount: A:0.35, C:0.04, G:0.06, T:0.55
Consensus pattern (26 bp):
TTACTTAAGTTTAATATTATTTAATA
Found at i:14974126 original size:124 final size:124
Alignment explanation
Indices: 14973931--14974280 Score: 506
Period size: 124 Copynumber: 2.8 Consensus size: 124
14973921 TAATTTCGAG
* * *
14973931 TTGACGTTTCTGATCAAATAGTATAAAATCGCTTCTAGCAAGATGCTATTTGAGAAAAATTTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAAGATGCTATTTGAGAAGAATTTGTA
* *
14973996 AAATCGCGCCCTCGTGGACGCGCTTTGGCTACAGTAGGTCATCGAAGAAATAATTTTTT
66 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCATCGAAGAAATAAATTTTT
* * * *
14974055 TTGACGTTTCTGAGCAAATAGTATAAAAGCACTTCTAGTAGGATGCTATTTGAGAAGAATTTGTA
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAAGATGCTATTTGAGAAGAATTTGTA
* ** *
14974120 AAATCGCACCCTCGTGGACGTACTTTTGCTACAGTCA-GTCATGGAAGAAATAAATTTTT
66 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGT-AGGTCATCGAAGAAATAAATTTTT
* * * *
14974179 TT-ATGTTTTTGAGAAAATAGTATAAAATCGCTTCTAGCATGATGCTATTTGAGAAGAATTTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAAGATGCTATTTGAGAAGAATTTGT-
*
14974243 AAAATCGCGCCCTTGTGGACGCGCTTTTGCTACAGTAG
65 AAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAG
14974281 CATGTTTGGG
Statistics
Matches: 199, Mismatches: 24, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
123 55 0.28
124 143 0.72
125 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (124 bp):
TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAAGATGCTATTTGAGAAGAATTTGTA
AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCATCGAAGAAATAAATTTTT
Found at i:14977493 original size:116 final size:116
Alignment explanation
Indices: 14977289--14977532 Score: 409
Period size: 116 Copynumber: 2.1 Consensus size: 116
14977279 TAAGTTTGTG
*
14977289 AAATTATTAATTGATAAATTGTATTAATGGTTAGTAAAAATTATCAAATTATATAAAATTATTAA
1 AAATTATTAATTGATAAATTGTATTAATGATTAGTAAAAATTATCAAATTATATAAAATTATTAA
* ** *
14977354 TTGTTAGTATCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTA
66 TTGTTAGTACCAGAAAAAACATTTTTCCAAATCTAACATTATGTGAAAGTA
* *
14977405 AAATTATTAATTGATAAATTGTATTAATGATTAGT-ACAATTATCAAATTTTATAAAATTATTAA
1 AAATTATTAATTGATAAATTGTATTAATGATTAGTAAAAATTATCAAATTATATAAAATTATTAA
14977469 TTGTTAGTACCAGGAAAAAACATTTTTCCAAATCTAACATTATGTGAAAGTA
66 TTGTTAGTACCA-GAAAAAACATTTTTCCAAATCTAACATTATGTGAAAGTA
14977521 AAATTATTAATT
1 AAATTATTAATT
14977533 TAGTTTAGGG
Statistics
Matches: 120, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
115 38 0.32
116 82 0.68
ACGTcount: A:0.44, C:0.07, G:0.09, T:0.40
Consensus pattern (116 bp):
AAATTATTAATTGATAAATTGTATTAATGATTAGTAAAAATTATCAAATTATATAAAATTATTAA
TTGTTAGTACCAGAAAAAACATTTTTCCAAATCTAACATTATGTGAAAGTA
Found at i:14977558 original size:23 final size:22
Alignment explanation
Indices: 14977526--14978229 Score: 568
Period size: 23 Copynumber: 31.1 Consensus size: 22
14977516 AAGTAAAATT
*
14977526 ATTAATTTAGTTTAGGGTTTTTA
1 ATTAA-TTAGGTTAGGGTTTTTA
14977549 ATTAAATTAGGTTAGGGTTTTTA
1 ATT-AATTAGGTTAGGGTTTTTA
14977572 ATTTAATTAGGTTAGGGTTTTTA
1 A-TTAATTAGGTTAGGGTTTTTA
**
14977595 AGTTAATGGGGTTAGGG-TTTTA
1 A-TTAATTAGGTTAGGGTTTTTA
* *
14977617 AGT--TTAGGGTCTAAGGTTTTTA
1 ATTAATTA-GGT-TAGGGTTTTTA
*
14977639 ATTTACTTAGGTTAGGGTTTTTA
1 A-TTAATTAGGTTAGGGTTTTTA
14977662 AGTTAATTAGG-T-GGGTTTTTA
1 A-TTAATTAGGTTAGGGTTTTTA
***
14977683 AGTTAAGGGGGTTAGGGTTTTTA
1 A-TTAATTAGGTTAGGGTTTTTA
* **
14977706 AGTTAA--GGGTTTAAAGTTTTTA
1 A-TTAATTAGG-TTAGGGTTTTTA
*
14977728 ATTAAATTAGGTTAGAGTTTTTA
1 ATT-AATTAGGTTAGGGTTTTTA
*
14977751 AGT--TTAGAGTTTAGGGTTTTTA
1 ATTAATTAG-G-TTAGGGTTTTTA
14977773 ATTTAATTAGGTTAGGGTTTTTA
1 A-TTAATTAGGTTAGGGTTTTTA
* *
14977796 AGT--TTAGGGTTTAGAGTTTTTA
1 ATTAATTA-GG-TTAGGGTTTTTA
14977818 ATTAAATTAGGTTAGGGTTTTTA
1 ATT-AATTAGGTTAGGGTTTTTA
*
14977841 CGTTAATTAGGTTAGGGTTTTTA
1 -ATTAATTAGGTTAGGGTTTTTA
*** *
14977864 AGTTAAGGGGGTTAGCGTTTTTA
1 A-TTAATTAGGTTAGGGTTTTTA
*
14977887 AGT--TTAGGGTTTAGGGTTTTTA
1 ATTAATTA-GG-TTAGGGTTTTTA
*
14977909 ATTTAATTAGGTCAGGGTTTTTA
1 A-TTAATTAGGTTAGGGTTTTTA
*
14977932 ATTAAATTAGGTTAGAGTTTTTA
1 ATT-AATTAGGTTAGGGTTTTTA
*
14977955 ATTAAATTAGATTAGGGTTTTTA
1 ATT-AATTAGGTTAGGGTTTTTA
* *
14977978 AGTT--TAAGGTTTAGGGTTTTAA
1 A-TTAATTAGG-TTAGGGTTTTTA
14978000 ATTTAATTAGGTTAGGGTTTTTA
1 A-TTAATTAGGTTAGGGTTTTTA
* *
14978023 AGTT--TAAGGTTTAGAGTTTTTA
1 A-TTAATTAGG-TTAGGGTTTTTA
*
14978045 ATTAAATTAGGTTAGGATTTTTA
1 ATT-AATTAGGTTAGGGTTTTTA
*
14978068 AGT--TTAGGATTTAGGGTTTTTA
1 ATTAATTAGG--TTAGGGTTTTTA
*
14978090 ATTAAATTAGGTTAGAGTTTTTA
1 ATT-AATTAGGTTAGGGTTTTTA
14978113 ATTTAATTAGGTTAGGGTTTTTA
1 A-TTAATTAGGTTAGGGTTTTTA
14978136 AGTTAATTAGGTTAGGGTTTTTA
1 A-TTAATTAGGTTAGGGTTTTTA
***
14978159 AGTTAAGGGGGTTAGGGTTTTTA
1 A-TTAATTAGGTTAGGGTTTTTA
* *
14978182 AGT--TTAGGGTTTAAGGTTTTTA
1 ATTAATTA-GG-TTAGGGTTTTTA
14978204 ATTAAATTAGGTTAGGGTTTTTA
1 ATT-AATTAGGTTAGGGTTTTTA
14978227 ATT
1 ATT
14978230 TAAGGGTATT
Statistics
Matches: 559, Mismatches: 71, Indels: 102
0.76 0.10 0.14
Matches are distributed among these distances:
19 1 0.00
20 15 0.03
21 43 0.08
22 121 0.22
23 328 0.59
24 30 0.05
25 21 0.04
ACGTcount: A:0.27, C:0.01, G:0.25, T:0.48
Consensus pattern (22 bp):
ATTAATTAGGTTAGGGTTTTTA
Found at i:14977741 original size:45 final size:45
Alignment explanation
Indices: 14977535--14978182 Score: 642
Period size: 45 Copynumber: 14.3 Consensus size: 45
14977525 TATTAATTTA
* *
14977535 GTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATTTAATTAG
1 GTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAGTTAA--GG
** *
14977582 G-TTAGGGTTTTTAAGTT-AATGGGGTTAGGG-TTTTAAGTTTAGG
1 GTTTAGGGTTTTTAA-TTAAATTAGGTTAGGGTTTTTAAGTTAAGG
* * * * *
14977625 GTCTAAGGTTTTTAATTTACTTAGGTTAGGGTTTTTAAGTTAATTAG
1 GTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAGTTAA--GG
***
14977672 G--T-GGGTTTTTAAGTT-AAGGGGGTTAGGGTTTTTAAGTTAAGG
1 GTTTAGGGTTTTTAA-TTAAATTAGGTTAGGGTTTTTAAGTTAAGG
** * * *
14977714 GTTTAAAGTTTTTAATTAAATTAGGTTAGAGTTTTTAAGTTTAGA
1 GTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAGTTAAGG
* *
14977759 GTTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTTAGG
1 GTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAGTTAAGG
* * *
14977804 GTTTAGAGTTTTTAATTAAATTAGGTTAGGGTTTTTACGTTAATTAG
1 GTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAGTTAA--GG
*** * *
14977851 G-TTAGGGTTTTTAAGTT-AAGGGGGTTAGCGTTTTTAAGTTTAGG
1 GTTTAGGGTTTTTAA-TTAAATTAGGTTAGGGTTTTTAAGTTAAGG
* * *
14977895 GTTTAGGGTTTTTAATTTAATTAGGTCAGGGTTTTTAA-TTAAATTAG
1 GTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAGTT-AA--GG
* *
14977942 G-TTAGAGTTTTTAATTAAATTAGATTAGGGTTTTTAAGTTTAA-G
1 GTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAG-TTAAGG
* *
14977986 GTTTAGGGTTTTAAATTTAATTAGGTTAGGGTTTTTAAGTTTAA-G
1 GTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAG-TTAAGG
* * *
14978031 GTTTAGAGTTTTTAATTAAATTAGGTTAGGATTTTTAAGTTTAGG
1 GTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAGTTAAGG
* * * *
14978076 ATTTAGGGTTTTTAATTAAATTAGGTTAGAGTTTTTAATTTAATTAG
1 GTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAGTTAA--GG
14978123 G-TTAGGGTTTTTAAGTT-AATTAGGTTAGGGTTTTTAAGTTAAGGG
1 GTTTAGGGTTTTTAA-TTAAATTAGGTTAGGGTTTTTAAGTTAA-GG
*
14978168 GGTTAGGGTTTTTAA
1 GTTTAGGGTTTTTAA
14978183 GTTTAGGGTT
Statistics
Matches: 498, Mismatches: 76, Indels: 55
0.79 0.12 0.09
Matches are distributed among these distances:
42 2 0.00
43 4 0.01
44 65 0.13
45 273 0.55
46 136 0.27
47 16 0.03
48 2 0.00
ACGTcount: A:0.26, C:0.01, G:0.25, T:0.48
Consensus pattern (45 bp):
GTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAGTTAAGG
Found at i:14977805 original size:90 final size:91
Alignment explanation
Indices: 14977535--14978232 Score: 823
Period size: 91 Copynumber: 7.7 Consensus size: 91
14977525 TATTAATTTA
14977535 GTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAA-TTTAATTAGGTTAGGGTTTTTAAGTT
1 GTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAGTTT-ATTAGGTTAGGGTTTTTAAGTT
**
14977599 AATGGGGTTAGGG-TTTTAAGTTTAGG
65 AATTAGGTTAGGGTTTTTAAGTTTAGG
* * * * *
14977625 GTCTAAGGTTTTTAATTTACTTAGGTTAGGGTTTTTAAGTTAATTAGG-T-GGGTTTTTAAGTTA
1 GTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAGTTTATTAGGTTAGGGTTTTTAAGTTA
*** *
14977688 AGGGGGTTAGGGTTTTTAAGTTAAGG
66 ATTAGGTTAGGGTTTTTAAGTTTAGG
** * * * *
14977714 GTTTAAAGTTTTTAATTAAATTAGGTTAGAGTTTTTAAGTTTA-GAGTTTAGGGTTTTTAATTTA
1 GTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAGTTTATTAGGTTAGGGTTTTTAAGTTA
14977778 ATTAGGTTAGGGTTTTTAAGTTTAGG
66 ATTAGGTTAGGGTTTTTAAGTTTAGG
* * *
14977804 GTTTAGAGTTTTTAATTAAATTAGGTTAGGGTTTTTACGTTAATTAGGTTAGGGTTTTTAAGTTA
1 GTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAGTTTATTAGGTTAGGGTTTTTAAGTTA
*** *
14977869 AGGGGGTTAGCGTTTTTAAGTTTAGG
66 ATTAGGTTAGGGTTTTTAAGTTTAGG
* * * *
14977895 GTTTAGGGTTTTTAATTTAATTAGGTCAGGGTTTTTAA-TTAAATTAGGTTAGAGTTTTTAA-TT
1 GTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAGTT-TATTAGGTTAGGGTTTTTAAGTT
* *
14977958 AAATTAGATTAGGGTTTTTAAGTTTAAG
65 -AATTAGGTTAGGGTTTTTAAGTTTAGG
* * *
14977986 GTTTAGGGTTTTAAATTTAATTAGGTTAGGGTTTTTAAGTTTA--AGGTTTAGAGTTTTTAA-TT
1 GTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAGTTTATTAGG-TTAGGGTTTTTAAGTT
*
14978048 AAATTAGGTTAGGATTTTTAAGTTTAGG
65 -AATTAGGTTAGGGTTTTTAAGTTTAGG
* *
14978076 ATTTAGGGTTTTTAATTAAATTAGGTTAGAGTTTTTAA-TTTAATTAGGTTAGGGTTTTTAAGTT
1 GTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAGTTT-ATTAGGTTAGGGTTTTTAAGTT
*
14978140 AATTAGGTTAGGGTTTTTAAGTTAAGGG
65 AATTAGGTTAGGGTTTTTAAGTTTA-GG
* * * * *
14978168 GGTTAGGGTTTTTAAGT---TTAGGGTTTAAGGTTTTTAA-TTAAATTAGGTTAGGGTTTTTAAT
1 GTTTAGGGTTTTTAATTAAATTA-GG-TTAGGGTTTTTAAGTT-TATTAGGTTAGGGTTTTTAAG
14978229 TTAA
63 TTAA
14978233 GGGTATTAAT
Statistics
Matches: 529, Mismatches: 62, Indels: 33
0.85 0.10 0.05
Matches are distributed among these distances:
88 27 0.05
89 60 0.11
90 195 0.37
91 224 0.42
92 23 0.04
ACGTcount: A:0.27, C:0.01, G:0.25, T:0.48
Consensus pattern (91 bp):
GTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAGTTTATTAGGTTAGGGTTTTTAAGTTA
ATTAGGTTAGGGTTTTTAAGTTTAGG
Found at i:14978204 original size:45 final size:45
Alignment explanation
Indices: 14978106--14978246 Score: 128
Period size: 45 Copynumber: 3.1 Consensus size: 45
14978096 TTAGGTTAGA
* ** *
14978106 GTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATTA-GG-TTAGG
1 GTTTTTAATTAAAGGAGGTTAGGGTTTTTAAG-T--TTAGGGTTTAAG
*
14978152 GTTTTTAAGTT-AAGGGGGTTAGGGTTTTTAAGTTTAGGGTTTAAG
1 GTTTTTAA-TTAAAGGAGGTTAGGGTTTTTAAGTTTAGGGTTTAAG
**
14978197 GTTTTTAATTAAATTAGGTTAGGGTTTTTAA-TTTAAGGGTATTAATG
1 GTTTTTAATTAAAGGAGGTTAGGGTTTTTAAGTTT-AGGGT-TTAA-G
14978244 GTT
1 GTT
14978247 AGTAGAATTC
Statistics
Matches: 81, Mismatches: 7, Indels: 13
0.80 0.07 0.13
Matches are distributed among these distances:
43 3 0.04
44 7 0.09
45 35 0.43
46 30 0.37
47 6 0.07
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.48
Consensus pattern (45 bp):
GTTTTTAATTAAAGGAGGTTAGGGTTTTTAAGTTTAGGGTTTAAG
Found at i:14978305 original size:25 final size:25
Alignment explanation
Indices: 14978275--14978322 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
14978265 TATCAAAAAT
14978275 TTCTATTTTATTACATCAAATAAAC
1 TTCTATTTTATTACATCAAATAAAC
14978300 TTCTATTTTATTACATCAAATAA
1 TTCTATTTTATTACATCAAATAA
14978323 TATCAAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.40, C:0.15, G:0.00, T:0.46
Consensus pattern (25 bp):
TTCTATTTTATTACATCAAATAAAC
Found at i:14978778 original size:18 final size:18
Alignment explanation
Indices: 14978755--14978790 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
14978745 CGGAAAAGGG
*
14978755 TACATATAAGGGTTAGGA
1 TACATATAAGGGCTAGGA
14978773 TACATATAAGGGCTAGGA
1 TACATATAAGGGCTAGGA
14978791 AACGCACCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.39, C:0.08, G:0.28, T:0.25
Consensus pattern (18 bp):
TACATATAAGGGCTAGGA
Found at i:14979451 original size:7 final size:7
Alignment explanation
Indices: 14979441--14979465 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14979431 TTATATACAT
14979441 AATACTA
1 AATACTA
14979448 AATACTA
1 AATACTA
14979455 AATACTA
1 AATACTA
14979462 AATA
1 AATA
14979466 TCAATCGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:14980591 original size:12 final size:12
Alignment explanation
Indices: 14980567--14980609 Score: 54
Period size: 11 Copynumber: 3.8 Consensus size: 12
14980557 ATTTTTACGG
14980567 TTTAAAAAA-AT
1 TTTAAAAAATAT
14980578 TTTAAAAAATAT
1 TTTAAAAAATAT
* *
14980590 TTTTAAAATTA-
1 TTTAAAAAATAT
14980601 TTTAAAAAA
1 TTTAAAAAA
14980610 AGGGAGTTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
11 16 0.59
12 11 0.41
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
TTTAAAAAATAT
Found at i:14980632 original size:11 final size:11
Alignment explanation
Indices: 14980616--14980666 Score: 84
Period size: 11 Copynumber: 4.6 Consensus size: 11
14980606 AAAAAGGGAG
*
14980616 TTAAGAGAAAC
1 TTAAGAGGAAC
14980627 TTAAGAGGAAC
1 TTAAGAGGAAC
*
14980638 TTAAAAGGAAC
1 TTAAGAGGAAC
14980649 TTAAGAGGAAC
1 TTAAGAGGAAC
14980660 TTAAGAG
1 TTAAGAG
14980667 AATTTTTGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
11 37 1.00
ACGTcount: A:0.49, C:0.08, G:0.24, T:0.20
Consensus pattern (11 bp):
TTAAGAGGAAC
Found at i:14980691 original size:11 final size:11
Alignment explanation
Indices: 14980675--14980704 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
14980665 AGAATTTTTG
14980675 AAGGAAATTGA
1 AAGGAAATTGA
14980686 AAGGAAATTGA
1 AAGGAAATTGA
*
14980697 CAGGAAAT
1 AAGGAAAT
14980705 ATGAGAGATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.53, C:0.03, G:0.27, T:0.17
Consensus pattern (11 bp):
AAGGAAATTGA
Found at i:14989151 original size:13 final size:13
Alignment explanation
Indices: 14989122--14989151 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
14989112 TTTATAATTT
14989122 TTAATTTTTAAAA
1 TTAATTTTTAAAA
14989135 -TAATTTTTAAAA
1 TTAATTTTTAAAA
14989147 TTAAT
1 TTAAT
14989152 AAAATGCTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
TTAATTTTTAAAA
Found at i:14995241 original size:57 final size:59
Alignment explanation
Indices: 14995130--14995268 Score: 185
Period size: 57 Copynumber: 2.3 Consensus size: 59
14995120 AATTGACGGT
*
14995130 AAAAAGGATCTAGCCCGGACGGGTGATCCTATCATGATATAGCCCTCCCGAAGAATATGTGTG
1 AAAAA-GATCTAGCCCGGACGAGTGATCC-AT-ATGATATAGCCCTCCCGAAGAATATGTG-G
14995193 AAAAAGATCTAGCCCGGACGAGTGAT-C-T-TGATATAGCCCTCCCGAAGAATATGTGG
1 AAAAAGATCTAGCCCGGACGAGTGATCCATATGATATAGCCCTCCCGAAGAATATGTGG
* *
14995249 AAAATGGATTTAGCCCGGAC
1 AAAA-AGATCTAGCCCGGAC
14995269 AGGTAATATG
Statistics
Matches: 72, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
56 5 0.07
57 40 0.56
59 1 0.01
61 1 0.01
62 20 0.28
63 5 0.07
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.22
Consensus pattern (59 bp):
AAAAAGATCTAGCCCGGACGAGTGATCCATATGATATAGCCCTCCCGAAGAATATGTGG
Found at i:15003816 original size:24 final size:26
Alignment explanation
Indices: 15003753--15003817 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 26
15003743 CTAAGTTTGG
*
15003753 ATATATATTATAACTCTACGAACTGTTA
1 ATATATATTAT-A-TCTACGAACTATTA
*
15003781 A-ATACATGTATAT-T-CGAACTATTA
1 ATATATAT-TATATCTACGAACTATTA
15003805 ATATATATTATAT
1 ATATATATTATAT
15003818 AAACATGAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
24 15 0.47
25 6 0.19
26 1 0.03
27 6 0.19
28 4 0.12
ACGTcount: A:0.42, C:0.11, G:0.06, T:0.42
Consensus pattern (26 bp):
ATATATATTATATCTACGAACTATTA
Found at i:15005049 original size:22 final size:21
Alignment explanation
Indices: 15005019--15005063 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
15005009 ACACCAAAAC
* *
15005019 AGGCTTTTAGCGGCGCTTTTTT
1 AGGCCTTTAGCAGCG-TTTTTT
15005041 AGGCCTTTAGCAGCGTTTTTT
1 AGGCCTTTAGCAGCGTTTTTT
15005062 AG
1 AG
15005064 CGCCGCTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.13, C:0.18, G:0.27, T:0.42
Consensus pattern (21 bp):
AGGCCTTTAGCAGCGTTTTTT
Found at i:15005460 original size:43 final size:43
Alignment explanation
Indices: 15005133--15005446 Score: 450
Period size: 43 Copynumber: 7.3 Consensus size: 43
15005123 GCGTCGCTAA
* *
15005133 CTTTAGCGGCGC-TTTCCCACAAACGCCGCTAAAGACCATGAC
1 CTTTAGCGACGCTTTTCCGACAAACGCCGCTAAAGACCATGAC
* * * *
15005175 CTTTAGCGGCGCTTTTCCCACAAACGACGCTAAAGACCATGAT
1 CTTTAGCGACGCTTTTCCGACAAACGCCGCTAAAGACCATGAC
15005218 CTTTAGCGACGCTTTTCCGACAAACGCCGCTAAAGACCATGAC
1 CTTTAGCGACGCTTTTCCGACAAACGCCGCTAAAGACCATGAC
* *
15005261 CTTTAGCGGCGCTTTTCCGACAAACGCCGCTAAAGACCATGAT
1 CTTTAGCGACGCTTTTCCGACAAACGCCGCTAAAGACCATGAC
* * *
15005304 CTTTAGCGTCGCTTTTTCGACAAACGCCGCTAAAGACGATGAC
1 CTTTAGCGACGCTTTTCCGACAAACGCCGCTAAAGACCATGAC
* * *
15005347 TTTTAGCGACGCTTTTCCGACAAACGCCACTAAAGACCCTGAC
1 CTTTAGCGACGCTTTTCCGACAAACGCCGCTAAAGACCATGAC
* * **
15005390 CTTTAGCGACGCTTTTCCCAAAAACGCCGCTAAAGACCACAAC
1 CTTTAGCGACGCTTTTCCGACAAACGCCGCTAAAGACCATGAC
*
15005433 CTTTAGCGATGCTT
1 CTTTAGCGACGCTT
15005447 AAACAACAAA
Statistics
Matches: 245, Mismatches: 26, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
42 12 0.05
43 233 0.95
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.23
Consensus pattern (43 bp):
CTTTAGCGACGCTTTTCCGACAAACGCCGCTAAAGACCATGAC
Found at i:15010477 original size:39 final size:39
Alignment explanation
Indices: 15010434--15010518 Score: 116
Period size: 39 Copynumber: 2.2 Consensus size: 39
15010424 TGGGCCTAGT
* *
15010434 TTTTTTGCGGCGCTTTTCTAAAAACGCCACTAATGCTCA
1 TTTTTAGCGGCGCTTTTCGAAAAACGCCACTAATGCTCA
* * * *
15010473 TTTTTAGCGGCGTTTTTCGAAAAGCGCCGCTAATGCTTA
1 TTTTTAGCGGCGCTTTTCGAAAAACGCCACTAATGCTCA
15010512 TTTTTAG
1 TTTTTAG
15010519 TGATTTTATT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.39
Consensus pattern (39 bp):
TTTTTAGCGGCGCTTTTCGAAAAACGCCACTAATGCTCA
Found at i:15010930 original size:8 final size:8
Alignment explanation
Indices: 15010919--15010947 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
15010909 AAATATAACT
15010919 CTAAACCC
1 CTAAACCC
15010927 CTAAACCC
1 CTAAACCC
15010935 CT-AACCC
1 CTAAACCC
15010942 CTAAAC
1 CTAAAC
15010948 TTTAAATCCC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.38, C:0.48, G:0.00, T:0.14
Consensus pattern (8 bp):
CTAAACCC
Found at i:15010967 original size:21 final size:22
Alignment explanation
Indices: 15010928--15010968 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
15010918 TCTAAACCCC
15010928 TAAACCCCTAACCCCTAAACTT
1 TAAACCCCTAACCCCTAAACTT
* *
15010950 TAAATCCC-AACCCTTAAAC
1 TAAACCCCTAACCCCTAAAC
15010969 AATAAACCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.39, C:0.39, G:0.00, T:0.22
Consensus pattern (22 bp):
TAAACCCCTAACCCCTAAACTT
Found at i:15011188 original size:16 final size:17
Alignment explanation
Indices: 15011155--15011193 Score: 71
Period size: 16 Copynumber: 2.4 Consensus size: 17
15011145 AAGAACACTA
15011155 TATTTAATATATTAAAT
1 TATTTAATATATTAAAT
15011172 TATTTAATATA-TAAAT
1 TATTTAATATATTAAAT
15011188 TATTTA
1 TATTTA
15011194 TAAAGAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 11 0.50
17 11 0.50
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
TATTTAATATATTAAAT
Found at i:15011342 original size:21 final size:20
Alignment explanation
Indices: 15011304--15011371 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 20
15011294 AATTAATCTA
* *
15011304 AACCCTAAATCCTAAACCCCT
1 AACCTTAAA-CCTCAACCCCT
15011325 AACTCTT-AACTCTCAACCCCT
1 AAC-CTTAAAC-CTCAACCCCT
*
15011346 AAACCTTAAACCTCAACCCTT
1 -AACCTTAAACCTCAACCCCT
15011367 AACCT
1 AACCT
15011372 ATAACATTAA
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
20 6 0.15
21 26 0.65
22 8 0.20
ACGTcount: A:0.35, C:0.41, G:0.00, T:0.24
Consensus pattern (20 bp):
AACCTTAAACCTCAACCCCT
Found at i:15011430 original size:7 final size:7
Alignment explanation
Indices: 15011379--15011467 Score: 61
Period size: 7 Copynumber: 12.6 Consensus size: 7
15011369 CCTATAACAT
15011379 TAAACCA
1 TAAACCA
*
15011386 TAAACCG
1 TAAACCA
* * *
15011393 CAACCCT
1 TAAACCA
*
15011400 TAAACCC
1 TAAACCA
* *
15011407 TAAATCT
1 TAAACCA
15011414 TAAACCA
1 TAAACCA
*
15011421 TAAACTA
1 TAAACCA
15011428 TAAACCA
1 TAAACCA
* *
15011435 TAACCCT
1 TAAACCA
15011442 TAAACTCA
1 TAAAC-CA
*
15011450 TAATCCA
1 TAAACCA
*
15011457 TAAACCT
1 TAAACCA
15011464 TAAA
1 TAAA
15011468 ATAGTAACTA
Statistics
Matches: 61, Mismatches: 20, Indels: 2
0.73 0.24 0.02
Matches are distributed among these distances:
7 56 0.92
8 5 0.08
ACGTcount: A:0.47, C:0.29, G:0.01, T:0.22
Consensus pattern (7 bp):
TAAACCA
Found at i:15011457 original size:22 final size:21
Alignment explanation
Indices: 15011378--15011525 Score: 82
Period size: 21 Copynumber: 7.0 Consensus size: 21
15011368 ACCTATAACA
* ** *
15011378 TTAAACCATAAACCGCAACCC
1 TTAAACTATAAACCATAAACC
** * *
15011399 TTAAACCCTAAATCTTAAACC
1 TTAAACTATAAACCATAAACC
* *
15011420 ATAAACTATAAACCATAACCC
1 TTAAACTATAAACCATAAACC
*
15011441 TTAAACTCATAATCCATAAACC
1 TTAAACT-ATAAACCATAAACC
* *
15011463 TTAAAATAGT-AACTATTAAACC
1 TTAAACTA-TAAACCA-TAAACC
* * *
15011485 TTAAACTCTAAATCATATACC
1 TTAAACTATAAACCATAAACC
* * * *
15011506 CTAAACCAAAAACCTTAAAC
1 TTAAACTATAAACCATAAAC
15011526 TATAGAGATA
Statistics
Matches: 94, Mismatches: 29, Indels: 8
0.72 0.22 0.06
Matches are distributed among these distances:
21 60 0.64
22 34 0.36
ACGTcount: A:0.47, C:0.27, G:0.01, T:0.24
Consensus pattern (21 bp):
TTAAACTATAAACCATAAACC
Found at i:15011807 original size:19 final size:20
Alignment explanation
Indices: 15011781--15011826 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
15011771 ATAGAATTTT
15011781 AATT-AATA-TAAATAAACA
1 AATTAAATAGTAAATAAACA
* *
15011799 AATTAAATAGTAATTAGACA
1 AATTAAATAGTAAATAAACA
*
15011819 AATAAAAT
1 AATTAAAT
15011827 GTTTTTGCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 4 0.17
19 4 0.17
20 15 0.65
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.28
Consensus pattern (20 bp):
AATTAAATAGTAAATAAACA
Found at i:15011890 original size:41 final size:41
Alignment explanation
Indices: 15011833--15011941 Score: 175
Period size: 41 Copynumber: 2.7 Consensus size: 41
15011823 AAATGTTTTT
*
15011833 GCGGCGCTTTTCCAAAAACGCTGCTAAAGA-CCAGAGCATTA
1 GCGGCGCTTTTCCAAAAACGCCGCTAAA-ACCCAGAGCATTA
*
15011874 GCGGCGCTTCTCCAAAAACGCCGCTAAAACCCAGAGCATTA
1 GCGGCGCTTTTCCAAAAACGCCGCTAAAACCCAGAGCATTA
*
15011915 GCGGCGCTTTTCTAAAAACGCCGCTAA
1 GCGGCGCTTTTCCAAAAACGCCGCTAA
15011942 TGTCCCGAAA
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
40 1 0.02
41 62 0.98
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.18
Consensus pattern (41 bp):
GCGGCGCTTTTCCAAAAACGCCGCTAAAACCCAGAGCATTA
Found at i:15013609 original size:30 final size:30
Alignment explanation
Indices: 15013573--15013645 Score: 128
Period size: 30 Copynumber: 2.4 Consensus size: 30
15013563 TTTTGAAGGA
15013573 AGGATCCGCGCGTCGACCCGACCCAGACCC
1 AGGATCCGCGCGTCGACCCGACCCAGACCC
*
15013603 AGGATCCGCGCGTCGACCCGACCCGGACCC
1 AGGATCCGCGCGTCGACCCGACCCAGACCC
*
15013633 AGGATCTGCGCGT
1 AGGATCCGCGCGT
15013646 TTCTTAGCGG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.18, C:0.42, G:0.30, T:0.10
Consensus pattern (30 bp):
AGGATCCGCGCGTCGACCCGACCCAGACCC
Found at i:15026333 original size:44 final size:44
Alignment explanation
Indices: 15026153--15026601 Score: 155
Period size: 44 Copynumber: 10.2 Consensus size: 44
15026143 AAAATTGTAG
* * **
15026153 ATCTTATCTCCCTAAGTAGTAGTGGAGCAGCTCAAAGACGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAA
* * * **
15026197 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCACCAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACGGCAA
** * * * * ** * * * ** * *
15026241 GCCTTGTCTCCTTGAGCAGCAACGGAGTAGGTTGAAAATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAA
*
15026285 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAA
* *
15026329 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCTAC--CAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAG--ACGGCAA
* * * * * * ** * *
15026373 GTCTTGTCTCCCTAAGCAGCAGTGGAGTAGGTTGAAAATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAA
* * *
15026417 ATCTTATATCCCTAAGCAGTAGTGGAGCAAATCGAAGACGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAA
* * * * * **
15026461 ATCTTATCTTTCC-AAG-A-TAGTAGGAAGAAAATTTAAGCCACCAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACGGCAA
** * * * * * * * ** * *
15026505 GCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAA
* **
15026549 ATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCAAAGACGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAA
15026593 ATCTTATCT
1 ATCTTATCT
15026602 TTCCAAGATA
Statistics
Matches: 272, Mismatches: 111, Indels: 44
0.64 0.26 0.10
Matches are distributed among these distances:
42 13 0.05
43 17 0.06
44 216 0.79
45 18 0.07
46 8 0.03
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAA
Found at i:15026691 original size:132 final size:132
Alignment explanation
Indices: 15026088--15026651 Score: 939
Period size: 132 Copynumber: 4.3 Consensus size: 132
15026078 CACTGACAGC
** * * *
15026088 GAAGCAGATCAAAGACACCAAGCCTTGTCTCCCTTAGTAGCAGCGGAGTAGGTTGAAAATTGTAG
1 GAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAG
* *
15026153 ATCTTATCTCCCTAAGTAGTAGTGGAGCAGCTCAAAGACGGCAAATCTTATCTTTCCAAGATAGT
66 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGT
15026218 GG
131 GG
* *
15026220 GAAGCAGATTTAAGCCACCAAGCCTTGTCTCCTTGAGCAGCAACGGAGTAGGTTGAAAATTGTAG
1 GAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAG
*
15026285 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGT
66 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGT
15026350 GG
131 GG
* * * *
15026352 GAAGCAGATTTAAGCTACCAAGTCTTGTCTCCCTAAGCAGCAGTGGAGTAGGTTGAAAATTGTAG
1 GAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAG
* * *
15026417 ATCTTATATCCCTAAGCAGTAGTGGAGCAAATCGAAGACGGCAAATCTTATCTTTCCAAGATAGT
66 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGT
*
15026482 AG
131 GG
* *
15026484 GAAGAAAATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAG
1 GAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAG
*
15026549 ATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGT
66 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGT
15026614 GG
131 GG
15026616 GAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGA
1 GAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGA
15026652 AGTTGCAGCA
Statistics
Matches: 400, Mismatches: 32, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 400 1.00
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.25
Consensus pattern (132 bp):
GAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAG
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGT
GG
Found at i:15033866 original size:13 final size:13
Alignment explanation
Indices: 15033848--15033873 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15033838 TTTGAGGTCG
15033848 ACTGAAATGATTT
1 ACTGAAATGATTT
15033861 ACTGAAATGATTT
1 ACTGAAATGATTT
15033874 CTTTGAGGTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (13 bp):
ACTGAAATGATTT
Found at i:15044826 original size:24 final size:23
Alignment explanation
Indices: 15044773--15044828 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 23
15044763 AATTATAAAG
*
15044773 TATATAAAAAAATATATTTGCAT
1 TATATAAAAAAAAATATTTGCAT
*
15044796 T-TTTAAAAAAAAATATGTT-CAT
1 TATATAAAAAAAAATAT-TTGCAT
15044818 ATATATAAAAA
1 -TATATAAAAA
15044829 TTAGTTAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
22 16 0.59
23 4 0.15
24 7 0.26
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.38
Consensus pattern (23 bp):
TATATAAAAAAAAATATTTGCAT
Found at i:15044827 original size:22 final size:24
Alignment explanation
Indices: 15044773--15044828 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
15044763 AATTATAAAG
* *
15044773 TATATAAAAAAATATATTTGCATT
1 TATATAAAAAAATATAGTTGCATA
* *
15044797 TTTAAAAAAAAATAT-GTT-CATA
1 TATATAAAAAAATATAGTTGCATA
15044819 TATATAAAAA
1 TATATAAAAA
15044829 TTAGTTAAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
22 11 0.42
23 2 0.08
24 13 0.50
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.38
Consensus pattern (24 bp):
TATATAAAAAAATATAGTTGCATA
Found at i:15044978 original size:21 final size:21
Alignment explanation
Indices: 15044939--15044979 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
15044929 TATACTACAA
* *
15044939 AAAAATAAATATGCGTATATG
1 AAAAATAAATATACATATATG
*
15044960 AAAAATATATATACATATAT
1 AAAAATAAATATACATATAT
15044980 ATATTTTTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.32
Consensus pattern (21 bp):
AAAAATAAATATACATATATG
Found at i:15046119 original size:17 final size:17
Alignment explanation
Indices: 15046097--15046138 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
15046087 TCGAATCTAC
* * *
15046097 TTTGGGCTTCTGTTTGG
1 TTTGGGCCTCAGTTGGG
15046114 TTTGGGCCTCAGTTGGG
1 TTTGGGCCTCAGTTGGG
15046131 TTTGGGCC
1 TTTGGGCC
15046139 ACATAGGTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.02, C:0.17, G:0.38, T:0.43
Consensus pattern (17 bp):
TTTGGGCCTCAGTTGGG
Found at i:15056293 original size:17 final size:17
Alignment explanation
Indices: 15056270--15056303 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
15056260 AGGAATTTTG
*
15056270 AAAAAAATAAAATAAAAT
1 AAAAAAA-AAGATAAAAT
15056288 AAAAAAAAAGATAAAA
1 AAAAAAAAAGATAAAA
15056304 AAATTTGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12
Consensus pattern (17 bp):
AAAAAAAAAGATAAAAT
Found at i:15060556 original size:12 final size:12
Alignment explanation
Indices: 15060529--15060562 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
15060519 CTTGGCACCA
*
15060529 AACAACTCATCAC
1 AACAACT-AACAC
15060542 AACAACTAACAC
1 AACAACTAACAC
15060554 AACAACTAA
1 AACAACTAA
15060563 TCTTCCATGC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 13 0.65
13 7 0.35
ACGTcount: A:0.56, C:0.32, G:0.00, T:0.12
Consensus pattern (12 bp):
AACAACTAACAC
Found at i:15062302 original size:18 final size:19
Alignment explanation
Indices: 15062264--15062305 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
15062254 GTATCATAAC
* *
15062264 TTTCAAATTTGAGCTTCAA
1 TTTCAAAATTGAGCCTCAA
15062283 TTTCAAAATTGA-CCTCAA
1 TTTCAAAATTGAGCCTCAA
15062301 TTTCA
1 TTTCA
15062306 TCCTTCTACA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.33, C:0.19, G:0.07, T:0.40
Consensus pattern (19 bp):
TTTCAAAATTGAGCCTCAA
Found at i:15066061 original size:17 final size:18
Alignment explanation
Indices: 15066039--15066077 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
15066029 TTATGTTATG
15066039 TTTTCTTTCTCTTTTC-T
1 TTTTCTTTCTCTTTTCAT
*
15066056 TTTTCTTTTTCTTTTCAT
1 TTTTCTTTCTCTTTTCAT
15066074 TTTT
1 TTTT
15066078 AGTTTAAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTCTTTCTCTTTTCAT
Found at i:15066120 original size:26 final size:26
Alignment explanation
Indices: 15066065--15066128 Score: 60
Period size: 26 Copynumber: 2.5 Consensus size: 26
15066055 TTTTTCTTTT
* * **
15066065 TCTTTTCATTTTTAGTTTAAGTTTTC
1 TCTTTTCATTTTTAGATTAAATTTAA
15066091 TCTTTTC-TTTTTAGATTAGAATTTAA
1 TCTTTTCATTTTTAGATTA-AATTTAA
*
15066117 TCTTAT-ATTTTT
1 TCTTTTCATTTTT
15066129 CTTTCTTTCT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
25 10 0.32
26 21 0.68
ACGTcount: A:0.20, C:0.09, G:0.06, T:0.64
Consensus pattern (26 bp):
TCTTTTCATTTTTAGATTAAATTTAA
Found at i:15067629 original size:12 final size:12
Alignment explanation
Indices: 15067612--15067646 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
15067602 ATTGACATAA
15067612 GAATAGGAGTAG
1 GAATAGGAGTAG
* *
15067624 GAATAGAATTAG
1 GAATAGGAGTAG
15067636 GAATAGGAGTA
1 GAATAGGAGTA
15067647 AAGTTAGATG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.34, T:0.20
Consensus pattern (12 bp):
GAATAGGAGTAG
Found at i:15070423 original size:17 final size:16
Alignment explanation
Indices: 15070403--15070441 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
15070393 TAAGTTAGGT
*
15070403 TTTTTTTTCTCTTTTCC
1 TTTTTTTT-TCTTTTCA
15070420 TTTTCTTTTTCTTTTCA
1 TTTT-TTTTTCTTTTCA
15070437 TTTTT
1 TTTTT
15070442 AGTATAGGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 15 0.75
18 4 0.20
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTTTTTTTCTTTTCA
Found at i:15076158 original size:12 final size:12
Alignment explanation
Indices: 15076141--15076167 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
15076131 GGGTCAGCCA
15076141 AATAGTTGGATG
1 AATAGTTGGATG
15076153 AATAGTTGGATG
1 AATAGTTGGATG
15076165 AAT
1 AAT
15076168 GAGAATATGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.37, C:0.00, G:0.30, T:0.33
Consensus pattern (12 bp):
AATAGTTGGATG
Found at i:15081188 original size:27 final size:27
Alignment explanation
Indices: 15081157--15081209 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
15081147 GGGAATGATC
** *
15081157 TTGGTCCCAATGACAATCCAAATGGTA
1 TTGGTCCCAACAAAAATCCAAATGGTA
*
15081184 TTGGTCTCAACAAAAATCCAAATGGT
1 TTGGTCCCAACAAAAATCCAAATGGT
15081210 TGAGATGTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (27 bp):
TTGGTCCCAACAAAAATCCAAATGGTA
Found at i:15084749 original size:10 final size:10
Alignment explanation
Indices: 15084734--15084784 Score: 59
Period size: 10 Copynumber: 5.1 Consensus size: 10
15084724 CTACTGTTAT
15084734 AAAAGAAAAA
1 AAAAGAAAAA
15084744 AAAAGAAAAA
1 AAAAGAAAAA
* *
15084754 GAAAA-TAATA
1 -AAAAGAAAAA
*
15084764 AAAAGAAAAG
1 AAAAGAAAAA
15084774 AAAAGAAAAA
1 AAAAGAAAAA
15084784 A
1 A
15084785 CAAGTACAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
9 4 0.12
10 25 0.76
11 4 0.12
ACGTcount: A:0.84, C:0.00, G:0.12, T:0.04
Consensus pattern (10 bp):
AAAAGAAAAA
Found at i:15089664 original size:11 final size:11
Alignment explanation
Indices: 15089642--15089688 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
15089632 TTATTAAGAG
15089642 AAATATATGTTA
1 AAATA-ATGTTA
15089654 AAATAATGTTA
1 AAATAATGTTA
** *
15089665 AGTTATTGTTA
1 AAATAATGTTA
15089676 AAAT-ATGTTA
1 AAATAATGTTA
15089686 AAA
1 AAA
15089689 CATAAAACAA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
10 8 0.28
11 16 0.55
12 5 0.17
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.40
Consensus pattern (11 bp):
AAATAATGTTA
Found at i:15093111 original size:22 final size:22
Alignment explanation
Indices: 15093067--15093236 Score: 85
Period size: 22 Copynumber: 7.7 Consensus size: 22
15093057 GTACGGGTTT
* *
15093067 AACACTTTTGTGCT-TTCTATTC
1 AACACTTTGGTGCTCTT-TGTTC
15093089 AACACTTTGGTGCTCTTTGTTC
1 AACACTTTGGTGCTCTTTGTTC
** * **
15093111 AGTACTTTGGTACTCCCTGTTC
1 AACACTTTGGTGCTCTTTGTTC
* * *
15093133 AGCACTTCGGTGCTCTTTGTTT
1 AACACTTTGGTGCTCTTTGTTC
** * * *
15093155 AGTACTTTGGTACTCATTGATC
1 AACACTTTGGTGCTCTTTGTTC
** *
15093177 AACACTTCAGTGCTCTCTT-TTT
1 AACACTTTGGTGCTCT-TTGTTC
** *
15093199 AGA-ACTTCAGTGCTCTTTGTTT
1 A-ACACTTTGGTGCTCTTTGTTC
* *
15093221 AGCACTATGGTGCTCT
1 AACACTTTGGTGCTCT
15093237 CTACTATGGT
Statistics
Matches: 112, Mismatches: 31, Indels: 10
0.73 0.20 0.07
Matches are distributed among these distances:
21 2 0.02
22 105 0.94
23 5 0.04
ACGTcount: A:0.16, C:0.23, G:0.17, T:0.44
Consensus pattern (22 bp):
AACACTTTGGTGCTCTTTGTTC
Found at i:15093145 original size:44 final size:44
Alignment explanation
Indices: 15093086--15093192 Score: 151
Period size: 44 Copynumber: 2.4 Consensus size: 44
15093076 GTGCTTTCTA
* *
15093086 TTCAACACTTTGGTGCTCTTTGTTCAGTACTTTGGTACTCCCTG
1 TTCAACACTTCGGTGCTCTTTGTTCAGTACTTTGGTACTCACTG
* * *
15093130 TTCAGCACTTCGGTGCTCTTTGTTTAGTACTTTGGTACTCATTG
1 TTCAACACTTCGGTGCTCTTTGTTCAGTACTTTGGTACTCACTG
* *
15093174 ATCAACACTTCAGTGCTCT
1 TTCAACACTTCGGTGCTCT
15093193 CTTTTTAGAA
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 55 1.00
ACGTcount: A:0.16, C:0.24, G:0.18, T:0.42
Consensus pattern (44 bp):
TTCAACACTTCGGTGCTCTTTGTTCAGTACTTTGGTACTCACTG
Found at i:15093200 original size:44 final size:44
Alignment explanation
Indices: 15093087--15093205 Score: 150
Period size: 44 Copynumber: 2.7 Consensus size: 44
15093077 TGCTTTCTAT
* * * *
15093087 TCAACACTTTGGTGCTCTTTGTTCAGTACTTTGGTACTCCCTGT
1 TCAACACTTCGGTGCTCTTTGTTTAGTACTTTGGTACTCACTGA
* *
15093131 TCAGCACTTCGGTGCTCTTTGTTTAGTACTTTGGTACTCATTGA
1 TCAACACTTCGGTGCTCTTTGTTTAGTACTTTGGTACTCACTGA
* *
15093175 TCAACACTTCAGTGCTCTCTT-TTTAGAACTT
1 TCAACACTTCGGTGCTCT-TTGTTTAGTACTT
15093206 CAGTGCTCTT
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
44 63 0.97
45 2 0.03
ACGTcount: A:0.17, C:0.24, G:0.17, T:0.43
Consensus pattern (44 bp):
TCAACACTTCGGTGCTCTTTGTTTAGTACTTTGGTACTCACTGA
Found at i:15096573 original size:49 final size:50
Alignment explanation
Indices: 15096389--15096574 Score: 151
Period size: 50 Copynumber: 3.7 Consensus size: 50
15096379 GGTAAAAAGA
* * * ** * * * **
15096389 TCCCATGTAAGACAATGTCTGGTACACGGTGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAACAGGAGAAC
** * * *
15096439 TCCCCCGTAAGACCATGTCTGGGACATGGCATAGGCACCAATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAACAGGAGAAC
* * * * **
15096489 TCCCATGTAAGACCATATCTAGGATATGACATTGGCA-GTACAGGA-AAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAACAGGAGAAC
*
15096537 ATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 -TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
15096575 TGTTATTATC
Statistics
Matches: 107, Mismatches: 28, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
48 3 0.03
49 36 0.34
50 68 0.64
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.22
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAACAGGAGAAC
Found at i:15102874 original size:21 final size:21
Alignment explanation
Indices: 15102850--15102892 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
15102840 ACATGATTTG
*
15102850 TATGTTATATGCTAAGTATGA
1 TATGTTATATGCCAAGTATGA
15102871 TATGTTATATGCCAAGTATGA
1 TATGTTATATGCCAAGTATGA
15102892 T
1 T
15102893 TTGAATCTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.07, G:0.19, T:0.42
Consensus pattern (21 bp):
TATGTTATATGCCAAGTATGA
Found at i:15108519 original size:3 final size:3
Alignment explanation
Indices: 15108513--15108537 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
15108503 CTCTTGTTGT
15108513 TGG TGG TGG TGG TGG TGG TGG TGG T
1 TGG TGG TGG TGG TGG TGG TGG TGG T
15108538 CTTGCTAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.64, T:0.36
Consensus pattern (3 bp):
TGG
Found at i:15111189 original size:13 final size:12
Alignment explanation
Indices: 15111166--15111195 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
15111156 ACTATTAATA
15111166 TAATAAATTATT
1 TAATAAATTATT
15111178 TCAATAAATTATT
1 T-AATAAATTATT
15111191 TAATA
1 TAATA
15111196 TTATAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (12 bp):
TAATAAATTATT
Found at i:15111196 original size:30 final size:30
Alignment explanation
Indices: 15111151--15111215 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
15111141 ACTTATCAAA
15111151 AATAAACTATTAATATAATAA-ATTATTTC
1 AATAAACTATTAATATAATAATATTATTTC
* * * *
15111180 AATAAATTATTTAATATTATAATTTTATTTT
1 AATAAACTA-TTAATATAATAATATTATTTC
15111211 AATAA
1 AATAA
15111216 TAAAATTTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 8 0.27
30 11 0.37
31 11 0.37
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (30 bp):
AATAAACTATTAATATAATAATATTATTTC
Found at i:15111725 original size:14 final size:14
Alignment explanation
Indices: 15111706--15111738 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
15111696 AATCAAACTA
15111706 TTTTTT-AAAATTAG
1 TTTTTTGAAAATT-G
15111720 TTTTTTGAAAATTG
1 TTTTTTGAAAATTG
15111734 TTTTT
1 TTTTT
15111739 AATAGGATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.27, C:0.00, G:0.09, T:0.64
Consensus pattern (14 bp):
TTTTTTGAAAATTG
Found at i:15115334 original size:27 final size:27
Alignment explanation
Indices: 15115303--15115357 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
15115293 TAGACTAAGC
*
15115303 ACTTTAACAATTCTGAGAATAAACACA
1 ACTTTAACAATTCCGAGAATAAACACA
15115330 ACTTTAACAATTCCGAGAATAAACACA
1 ACTTTAACAATTCCGAGAATAAACACA
15115357 A
1 A
15115358 TCATAAAGCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.49, C:0.20, G:0.07, T:0.24
Consensus pattern (27 bp):
ACTTTAACAATTCCGAGAATAAACACA
Found at i:15120991 original size:48 final size:48
Alignment explanation
Indices: 15120902--15120994 Score: 134
Period size: 48 Copynumber: 1.9 Consensus size: 48
15120892 AACACACCAT
* *
15120902 TTGTGGACAAGCCACCACATAAATGTCGATTAACGGACACATAACACA
1 TTGTGGACAAGCCACCACATAAATGTAGATAAACGGACACATAACACA
* *
15120950 TTGTGGACAAGCCACCACAT-AATCGTAGATAAACTGCCACATAAC
1 TTGTGGACAAGCCACCACATAAAT-GTAGATAAACGGACACATAAC
15120995 TTCCACCATT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
47 3 0.08
48 37 0.93
ACGTcount: A:0.39, C:0.26, G:0.16, T:0.19
Consensus pattern (48 bp):
TTGTGGACAAGCCACCACATAAATGTAGATAAACGGACACATAACACA
Found at i:15122174 original size:15 final size:15
Alignment explanation
Indices: 15122154--15122183 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
15122144 TCAGGAGAGA
*
15122154 AAATGAAAAAGAAAT
1 AAATGAAAAAAAAAT
15122169 AAATGAAAAAAAAAT
1 AAATGAAAAAAAAAT
15122184 GAAAATATGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.13
Consensus pattern (15 bp):
AAATGAAAAAAAAAT
Found at i:15128249 original size:21 final size:21
Alignment explanation
Indices: 15128211--15128250 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
15128201 TGGGCAAACC
*
15128211 ACCACATAATTGTCGATAACA
1 ACCACATAATTGTAGATAACA
15128232 ACCACATAATAT-TAGATAA
1 ACCACATAAT-TGTAGATAA
15128251 ACTGCCACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 16 0.94
22 1 0.06
ACGTcount: A:0.47, C:0.20, G:0.07, T:0.25
Consensus pattern (21 bp):
ACCACATAATTGTAGATAACA
Found at i:15133781 original size:40 final size:40
Alignment explanation
Indices: 15133683--15133950 Score: 274
Period size: 40 Copynumber: 6.6 Consensus size: 40
15133673 TCCTCGTTCA
* * * * *
15133683 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
15133722 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
15133762 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
15133802 AATGCCTTTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AA------TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
15133848 AATGCCTTCGGGACTTAACCCGGATTTAGT-TCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
15133887 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
15133927 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
15133951 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 19, Indels: 21
0.83 0.08 0.09
Matches are distributed among these distances:
38 3 0.02
39 63 0.32
40 85 0.43
41 8 0.04
46 40 0.20
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:15133831 original size:46 final size:46
Alignment explanation
Indices: 15133724--15133855 Score: 204
Period size: 46 Copynumber: 3.0 Consensus size: 46
15133714 ACTCACACAA
* *
15133724 TGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGAA------
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTT
15133764 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTT
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTT
15133810 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTT
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTT
15133856 CGGGACTTAA
Statistics
Matches: 84, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
40 38 0.45
46 46 0.55
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.26
Consensus pattern (46 bp):
TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTT
Found at i:15133883 original size:125 final size:125
Alignment explanation
Indices: 15133685--15133911 Score: 314
Period size: 125 Copynumber: 1.8 Consensus size: 125
15133675 CTCGTTCAAA
* * *
15133685 TGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATTTA
1 TGCCTTCGGGACATAACCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGATTTA
* *
15133750 ACAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGATTTAATAACTCGCACGAATGCCTT
66 ACAACTCGCACAAAGGCCTTC-GGATCTTAACCCGGATTTAATAACTCGCACGAATGCCTT
* * *
15133810 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTT
1 TGCCTTCGGGACATAACCCGGATTTAATAACTCACAC-AATGCCTTCGGGACATAACCCGGATTT
*** *
15133875 -AGTTCTCGCACAAAGGCCTTCGGATCTTAATCCGGAT
65 AACAACTCGCACAAAGGCCTTCGGATCTTAACCCGGAT
15133912 ATATTCACTT
Statistics
Matches: 88, Mismatches: 12, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
124 3 0.03
125 59 0.67
126 26 0.30
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (125 bp):
TGCCTTCGGGACATAACCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGATTTA
ACAACTCGCACAAAGGCCTTCGGATCTTAACCCGGATTTAATAACTCGCACGAATGCCTT
Found at i:15141380 original size:40 final size:40
Alignment explanation
Indices: 15141282--15141549 Score: 274
Period size: 40 Copynumber: 6.6 Consensus size: 40
15141272 TCCTCGTTCA
* * * * *
15141282 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
15141321 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
15141361 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
15141401 AATGCCTTTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AA------TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
15141447 AATGCCTTCGGGACTTAACCCGGATTTAGT-TCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
15141486 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
15141526 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
15141550 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 19, Indels: 21
0.83 0.08 0.09
Matches are distributed among these distances:
38 3 0.02
39 63 0.32
40 85 0.43
41 8 0.04
46 40 0.20
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:15141430 original size:46 final size:46
Alignment explanation
Indices: 15141323--15141454 Score: 204
Period size: 46 Copynumber: 3.0 Consensus size: 46
15141313 ACTCACACAA
* *
15141323 TGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGAA------
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTT
15141363 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTT
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTT
15141409 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTT
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTT
15141455 CGGGACTTAA
Statistics
Matches: 84, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
40 38 0.45
46 46 0.55
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.26
Consensus pattern (46 bp):
TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTT
Found at i:15141482 original size:125 final size:125
Alignment explanation
Indices: 15141284--15141510 Score: 314
Period size: 125 Copynumber: 1.8 Consensus size: 125
15141274 CTCGTTCAAA
* * *
15141284 TGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATTTA
1 TGCCTTCGGGACATAACCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGATTTA
* *
15141349 ACAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGATTTAATAACTCGCACGAATGCCTT
66 ACAACTCGCACAAAGGCCTTC-GGATCTTAACCCGGATTTAATAACTCGCACGAATGCCTT
* * *
15141409 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTT
1 TGCCTTCGGGACATAACCCGGATTTAATAACTCACAC-AATGCCTTCGGGACATAACCCGGATTT
*** *
15141474 -AGTTCTCGCACAAAGGCCTTCGGATCTTAATCCGGAT
65 AACAACTCGCACAAAGGCCTTCGGATCTTAACCCGGAT
15141511 ATATTCACTT
Statistics
Matches: 88, Mismatches: 12, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
124 3 0.03
125 59 0.67
126 26 0.30
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (125 bp):
TGCCTTCGGGACATAACCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGATTTA
ACAACTCGCACAAAGGCCTTCGGATCTTAACCCGGATTTAATAACTCGCACGAATGCCTT
Found at i:15157036 original size:60 final size:59
Alignment explanation
Indices: 15156924--15157227 Score: 283
Period size: 60 Copynumber: 5.1 Consensus size: 59
15156914 AATCTACCAT
* * * *
15156924 AAAGGCATC-TTTTTATTCAGTACTCACCCCAAAGACTTTCCTTTCCAA-AGTTTTGT-CAC
1 AAAGGCATCATTTTCATTCAGTACTCGCCACAAAGGCTTTCCTTT-CAAGA-TTTT-TCCAC
* * * * * *
15156983 AAGGGCGTCATTTTCATTCACTACTCACCATAAAGGCTTTCCTTTCAAGAGTTTTTCTAC
1 AAAGGCATCATTTTCATTCAGTACTCGCCACAAAGGCTTTCCTTTCAAGA-TTTTTCCAC
* * *
15157043 AAAAGGCATCCTTTTCATTCAGTACTTGCCACAAAGGCTTTCCTTTCCAGATATTTTCCAC
1 -AAAGGCATCATTTTCATTCAGTACTCGCCACAAAGGCTTTCCTTTCAAGAT-TTTTCCAC
* * * * *
15157104 AAATGCATCATTTTCATTCAGTACTTGTCACAAAGGCTTCCCTTTCCAGATTTTTTCCAC
1 AAAGGCATCATTTTCATTCAGTACTCGCCACAAAGGCTTTCCTTTCAAGA-TTTTTCCAC
* * * * * *
15157164 AAAGACATCCTTTTCATTTAGTACTCGCCATAAAGGCTTTCATTTCCAAAGA-TTTGCCAC
1 AAAGGCATCATTTTCATTCAGTACTCGCCACAAAGGCTTTCCTTT-C-AAGATTTTTCCAC
15157224 AAAG
1 AAAG
15157228 TCTTTCAATT
Statistics
Matches: 205, Mismatches: 32, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
59 11 0.05
60 140 0.68
61 51 0.25
62 3 0.01
ACGTcount: A:0.27, C:0.26, G:0.12, T:0.35
Consensus pattern (59 bp):
AAAGGCATCATTTTCATTCAGTACTCGCCACAAAGGCTTTCCTTTCAAGATTTTTCCAC
Found at i:15157080 original size:31 final size:31
Alignment explanation
Indices: 15157044--15157200 Score: 103
Period size: 31 Copynumber: 5.2 Consensus size: 31
15157034 TTTTTCTACA
15157044 AAAGGCATCCTTTTCATTCAGTACTTGCCAC
1 AAAGGCATCCTTTTCATTCAGTACTTGCCAC
* * *
15157075 AAAGGCTTTCC-TTTC---CAGATATTTTCCAC
1 AAAGGC-ATCCTTTTCATTCAG-TACTTGCCAC
* * *
15157104 AAATGCATCATTTTCATTCAGTACTTGTCAC
1 AAAGGCATCCTTTTCATTCAGTACTTGCCAC
* * ** *
15157135 AAAGGCTTCCCTTTC---CAGATTTTTTCCAC
1 AAAGGCATCCTTTTCATTCAG-TACTTGCCAC
* * * *
15157164 AAAGACATCCTTTTCATTTAGTACTCGCCAT
1 AAAGGCATCCTTTTCATTCAGTACTTGCCAC
15157195 AAAGGC
1 AAAGGC
15157201 TTTCATTTCC
Statistics
Matches: 89, Mismatches: 27, Indels: 20
0.65 0.20 0.15
Matches are distributed among these distances:
28 8 0.09
29 35 0.39
31 38 0.43
32 8 0.09
ACGTcount: A:0.27, C:0.27, G:0.11, T:0.35
Consensus pattern (31 bp):
AAAGGCATCCTTTTCATTCAGTACTTGCCAC
Found at i:15157084 original size:121 final size:120
Alignment explanation
Indices: 15156924--15157227 Score: 353
Period size: 121 Copynumber: 2.5 Consensus size: 120
15156914 AATCTACCAT
* * * * * *
15156924 AAAGGCAT-CTTTTTATTCAGTACTCACCCCAAAGACTTTCCTTTCCAAAGTTTTGTCACAAGGG
1 AAAGGCATCCTTTTCATTCAGTACTCGCCACAAAGGCTTTCCTTTCCAAAGTTTTGCCACAAAGG
* * * *
15156988 CGTCATTTTCATTCACTACTCACCATAAAGGCTTTCCTTTCAAGAGTTTTTCTAC
66 CATCATTTTCATTCACTACTCACCACAAAGGCTTCCCTTTCAAGAGTTTTTCCAC
*
15157043 AAAAGGCATCCTTTTCATTCAGTACTTGCCACAAAGGCTTTCCTTTCCAGATA-TTTT-CCACAA
1 -AAAGGCATCCTTTTCATTCAGTACTCGCCACAAAGGCTTTCCTTTCCA-A-AGTTTTGCCACAA
* * *** * *
15157106 ATGCATCATTTTCATTCAGTACTTGTCACAAAGGCTTCCCTTTCCAGATTTTTTCCAC
63 AGGCATCATTTTCATTCACTACTCACCACAAAGGCTTCCCTTTCAAGAGTTTTTCCAC
* * * * *
15157164 AAAGACATCCTTTTCATTTAGTACTCGCCATAAAGGCTTTCATTTCCAAAGATTTGCCACAAAG
1 AAAGGCATCCTTTTCATTCAGTACTCGCCACAAAGGCTTTCCTTTCCAAAGTTTTGCCACAAAG
15157228 TCTTTCAATT
Statistics
Matches: 154, Mismatches: 25, Indels: 10
0.81 0.13 0.05
Matches are distributed among these distances:
118 1 0.01
119 4 0.03
120 58 0.38
121 85 0.55
122 5 0.03
123 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.12, T:0.35
Consensus pattern (120 bp):
AAAGGCATCCTTTTCATTCAGTACTCGCCACAAAGGCTTTCCTTTCCAAAGTTTTGCCACAAAGG
CATCATTTTCATTCACTACTCACCACAAAGGCTTCCCTTTCAAGAGTTTTTCCAC
Found at i:15157087 original size:32 final size:32
Alignment explanation
Indices: 15157051--15157148 Score: 89
Period size: 29 Copynumber: 3.2 Consensus size: 32
15157041 ACAAAAGGCA
15157051 TCCTTTTCATTCAGTACTTGCCACAAAGGCTT
1 TCCTTTTCATTCAGTACTTGCCACAAAGGCTT
* * * *
15157083 TCC-TTTC---CAGATATTTTCCACAAATGC-A
1 TCCTTTTCATTCAG-TACTTGCCACAAAGGCTT
* *
15157111 TCATTTTCATTCAGTACTTGTCACAAAGGCTT
1 TCCTTTTCATTCAGTACTTGCCACAAAGGCTT
*
15157143 CCCTTT
1 TCCTTT
15157149 CCAGATTTTT
Statistics
Matches: 48, Mismatches: 12, Indels: 12
0.67 0.17 0.17
Matches are distributed among these distances:
28 5 0.10
29 17 0.35
31 16 0.33
32 10 0.21
ACGTcount: A:0.23, C:0.28, G:0.10, T:0.39
Consensus pattern (32 bp):
TCCTTTTCATTCAGTACTTGCCACAAAGGCTT
Found at i:15157166 original size:29 final size:29
Alignment explanation
Indices: 15157071--15157167 Score: 81
Period size: 29 Copynumber: 3.3 Consensus size: 29
15157061 TCAGTACTTG
*
15157071 CCACAAAGGCTTTCCTTTCCAGATATTTT
1 CCACAAAGGCTTCCCTTTCCAGATATTTT
* * ** *
15157100 CCACAAATGCATCATTTTCATTCAG-TACTTGT
1 CCACAAAGGCTTCCCTTTC---CAGATA-TTTT
*
15157132 -CACAAAGGCTTCCCTTTCCAGATTTTTT
1 CCACAAAGGCTTCCCTTTCCAGATATTTT
15157160 CCACAAAG
1 CCACAAAG
15157168 ACATCCTTTT
Statistics
Matches: 50, Mismatches: 12, Indels: 12
0.68 0.16 0.16
Matches are distributed among these distances:
28 6 0.12
29 22 0.44
31 16 0.32
32 6 0.12
ACGTcount: A:0.27, C:0.28, G:0.10, T:0.35
Consensus pattern (29 bp):
CCACAAAGGCTTCCCTTTCCAGATATTTT
Found at i:15157408 original size:50 final size:50
Alignment explanation
Indices: 15157347--15157444 Score: 151
Period size: 50 Copynumber: 2.0 Consensus size: 50
15157337 TTACTTTAGA
* * * *
15157347 TCTTTCCATATGATGCCATAATCCACCAGTTATGGTCTTACACGATATTG
1 TCTTTCCATATGACGCCATAACCCACCAGCTATGATCTTACACGATATTG
*
15157397 TCTTTCCATATGACGCCATAGCCCACCAGCTATGATCTTACACGATAT
1 TCTTTCCATATGACGCCATAACCCACCAGCTATGATCTTACACGATAT
15157445 GATTCTTTCA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 43 1.00
ACGTcount: A:0.27, C:0.28, G:0.13, T:0.33
Consensus pattern (50 bp):
TCTTTCCATATGACGCCATAACCCACCAGCTATGATCTTACACGATATTG
Found at i:15161065 original size:23 final size:23
Alignment explanation
Indices: 15161038--15161083 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
15161028 AACCCTAAGG
15161038 CTAGTGAAAAGATAGTGTTTTGT
1 CTAGTGAAAAGATAGTGTTTTGT
15161061 CTAGTGAAAAGATAGTGTTTTGT
1 CTAGTGAAAAGATAGTGTTTTGT
15161084 AAAGGTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.04, G:0.26, T:0.39
Consensus pattern (23 bp):
CTAGTGAAAAGATAGTGTTTTGT
Found at i:15165095 original size:56 final size:56
Alignment explanation
Indices: 15165009--15165184 Score: 334
Period size: 56 Copynumber: 3.1 Consensus size: 56
15164999 ACAAGGGATG
*
15165009 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
15165065 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
*
15165121 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAGTAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
15165177 ATGGGCAA
1 ATGGGCAA
15165185 TAAACTAAAA
Statistics
Matches: 118, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 118 1.00
ACGTcount: A:0.44, C:0.09, G:0.24, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:15166544 original size:40 final size:40
Alignment explanation
Indices: 15166313--15166537 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
15166303 TCGAATGATG
* * * *
15166313 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
15166353 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
15166393 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
15166432 TCTGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
15166472 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
15166513 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
15166538 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
39 33 0.20
40 118 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:15173094 original size:56 final size:56
Alignment explanation
Indices: 15173008--15173183 Score: 325
Period size: 56 Copynumber: 3.1 Consensus size: 56
15172998 ACAAGGGATG
* *
15173008 ATGGGAAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
*
15173064 ATGGGCAAAACACGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
15173120 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
15173176 ATGGGCAA
1 ATGGGCAA
15173184 TAAACTAATA
Statistics
Matches: 116, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 116 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.22
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:15174549 original size:40 final size:40
Alignment explanation
Indices: 15174311--15174535 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
15174301 TCGAATGATG
* * * *
15174311 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
15174351 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
15174391 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
15174430 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
15174470 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
15174511 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
15174536 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:15175935 original size:24 final size:24
Alignment explanation
Indices: 15175908--15175976 Score: 86
Period size: 24 Copynumber: 2.9 Consensus size: 24
15175898 TACATAAATA
*
15175908 ATAATCTATGATAAGTTTAAAACT
1 ATAATCTATGATAAATTTAAAACT
* *
15175932 ATAATATATGATAAATTTTAAACT
1 ATAATCTATGATAAATTTAAAACT
*
15175956 ATGATGC-ATGATAAATTTAAA
1 ATAAT-CTATGATAAATTTAAA
15175977 TCATATTAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.48, C:0.06, G:0.09, T:0.38
Consensus pattern (24 bp):
ATAATCTATGATAAATTTAAAACT
Found at i:15177837 original size:218 final size:218
Alignment explanation
Indices: 15177389--15178624 Score: 1852
Period size: 218 Copynumber: 5.7 Consensus size: 218
15177379 GTCTGGGAAG
* * * * * *
15177389 TAAGATCTGATGCAATCTACTCTACTGCAACCTCAGAGAGATAAGATCTATTGTTT-AATCCACT
1 TAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCCGCT
** * *
15177453 CCACTATAACTTCAAGGAGATAGGATTACTGGCCTCAATCTGCTCCACTGCAAACTCAGGAAGAT
66 CCACTGCAACTTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCACTGCAAACTCAGGAAGAT
*
15177518 AAGATTCACCATCTTCAGTTTGCCCCACTGCAACTTCAGGGGGATAAGACTTGCTTTCTTGGTCT
131 AAGATTCACCATCTTCAGTCTGCCCCACTGCAACTTCAGGGGGATAAGACTTGCTTTCTTGGTCT
* *
15177583 GCTCCGCTGCAACCTAAGGGAGA
196 GCTCCGCTGCAACCTCAGAGAGA
* * * *
15177606 TAAGACTTGATGCGATCCACTCTGCTGCAATTTCAGAGACATAAGATCTATTATTTGAATCCGCT
1 TAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCCGCT
* * * * *
15177671 CCACTACAACTTCAAGGAGATAGGATTACTGGCTTCAATGTGCTGCACTGCAAACTCAGGGAGAT
66 CCACTGCAACTTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCACTGCAAACTCAGGAAGAT
* *
15177736 AAGATTCACCATCTTCAGTCTGCCTCACTACAACTTCAGGGGGATAAGACTTGCTTTCTTGGTCT
131 AAGATTCACCATCTTCAGTCTGCCCCACTGCAACTTCAGGGGGATAAGACTTGCTTTCTTGGTCT
*
15177801 GCTCTGCTGCAACCTCAGAGAGA
196 GCTCCGCTGCAACCTCAGAGAGA
* * * *
15177824 TTAGACCTGATGCGATCCGCTCTACTGTAACTTCAGAGAGATAAGATCTATTATTTGAATTCGCT
1 TAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCCGCT
* *
15177889 CCACTGCCACTTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCACTGTAAACTCAGGAAGAT
66 CCACTGCAACTTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCACTGCAAACTCAGGAAGAT
*
15177954 AAGATTCACCATCTTCAGTCTGCCCCACTGCAACTTCAGGGGGATAAGACTTTCTTTCTTGGTCT
131 AAGATTCACCATCTTCAGTCTGCCCCACTGCAACTTCAGGGGGATAAGACTTGCTTTCTTGGTCT
*
15178019 GCTCCGCTGTAACCTCA-AGGAGA
196 GCTCCGCTGCAACCTCAGA-GAGA
* * * *
15178042 TAAGACCTGATGCGATCCGCTCTACTGCTACTTCAGAGAGATAAGATCTATTATTTGAATTCTCT
1 TAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCCGCT
* * *
15178107 CCACTGCCACTTGAGGGAGATAGGATTACTGGCTTCAATAAT-CTCCA-TCGCAAACTCAGGAAG
66 CCACTGCAACTTCAGGGAGATAGGATTACTGGCTTCAAT-CTGCTCCACT-GCAAACTCAGGAAG
* *
15178170 ATAAGATTCACCATCTTCAGTCTGCCCCTCTGCAACTTCAGGGGGATAAGACTTGTTTTCTTGGT
129 ATAAGATTCACCATCTTCAGTCTGCCCCACTGCAACTTCAGGGGGATAAGACTTGCTTTCTTGGT
* *
15178235 CTGCTTCGCTGCAACCTCAGGGAGA
194 CTGCTCCGCTGCAACCTCAGAGAGA
* **
15178260 TAAGACCTGATGCGATCCACTCTGCTGCAACTTCAGAGAGATAAGATCTATTATTTGAATTTGCT
1 TAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCCGCT
* * * *
15178325 CCACCGCAACTTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTACAAACTCAGGTAGAT
66 CCACTGCAACTTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCACTGCAAACTCAGGAAGAT
*
15178390 AAGATTCACCATCTTCATGTCTGCCCCACTACAACTTCAGGGGGATAAGACTTGCTTTCTTGGTC
131 AAGATTCACCATCTTCA-GTCTGCCCCACTGCAACTTCAGGGGGATAAGACTTGCTTTCTTGGTC
15178455 TGCTCCGCTGCAACCTCA-AGGAGA
195 TGCTCCGCTGCAACCTCAGA-GAGA
* * *
15178479 TAAGACTTGATGCGATCCACTCTACTACAACTTTAGAGAGATAAGATCTATTATTTGAATCCGCT
1 TAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCCGCT
* * * *
15178544 CTACTGCAACTTTAGGGAGATAGGATTACTGGCTTCAATCTGCTCCACTGCAACCTCAGGGAGAT
66 CCACTGCAACTTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCACTGCAAACTCAGGAAGAT
*
15178609 AAGATTCACCACCTTC
131 AAGATTCACCATCTTC
15178625 GATCTGCTCT
Statistics
Matches: 925, Mismatches: 85, Indels: 16
0.90 0.08 0.02
Matches are distributed among these distances:
217 50 0.05
218 676 0.73
219 199 0.22
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (218 bp):
TAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCCGCT
CCACTGCAACTTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCACTGCAAACTCAGGAAGAT
AAGATTCACCATCTTCAGTCTGCCCCACTGCAACTTCAGGGGGATAAGACTTGCTTTCTTGGTCT
GCTCCGCTGCAACCTCAGAGAGA
Found at i:15177993 original size:45 final size:44
Alignment explanation
Indices: 15177889--15178002 Score: 113
Period size: 45 Copynumber: 2.6 Consensus size: 44
15177879 TGAATTCGCT
* * ** *
15177889 CCACTGCCACTTCAGGGAGATAGGATTACTGGCTTCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTACCAGCTTCAATCTGCC
* * * *
15177933 CCACTGTAAAC-TCAGGAAGATAAGATTCACCATCTTCAGTCTGCC
1 CCACTG-CAACTTCAGGGAGATAAGATT-ACCAGCTTCAATCTGCC
*
15177978 CCACTGCAACTTCAGGGGGATAAGA
1 CCACTGCAACTTCAGGGAGATAAGA
15178003 CTTTCTTTCT
Statistics
Matches: 55, Mismatches: 12, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
44 23 0.42
45 32 0.58
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (44 bp):
CCACTGCAACTTCAGGGAGATAAGATTACCAGCTTCAATCTGCC
Found at i:15178369 original size:44 final size:44
Alignment explanation
Indices: 15178286--15178372 Score: 104
Period size: 44 Copynumber: 2.0 Consensus size: 44
15178276 CCACTCTGCT
* * * *
15178286 GCAACTTCAGAGAGATAAGATCTATTATTTGAATTTGCTCCACC
1 GCAACTTCAGAGAGATAAGATCTACTACTTCAATCTGCTCCACC
* *
15178330 GCAACTTCAGGGAGATAGGAT-TACTAGCTTCAATCTGCTCCAC
1 GCAACTTCAGAGAGATAAGATCTACTA-CTTCAATCTGCTCCAC
15178373 TACAAACTCA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
43 4 0.11
44 32 0.89
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (44 bp):
GCAACTTCAGAGAGATAAGATCTACTACTTCAATCTGCTCCACC
Found at i:15178384 original size:44 final size:46
Alignment explanation
Indices: 15178331--15178439 Score: 125
Period size: 46 Copynumber: 2.4 Consensus size: 46
15178321 TGCTCCACCG
* * *
15178331 CAACTTCAGGGAGATAGGATT-ACTAGCTTCA-ATCTGCTCCACTA
1 CAACTTCAGGGAGATAAGATTCACCAGCTTCATATCTGCCCCACTA
* * *
15178375 CAAAC-TCAGGTAGATAAGATTCACCATCTTCATGTCTGCCCCACTA
1 C-AACTTCAGGGAGATAAGATTCACCAGCTTCATATCTGCCCCACTA
*
15178421 CAACTTCAGGGGGATAAGA
1 CAACTTCAGGGAGATAAGA
15178440 CTTGCTTTCT
Statistics
Matches: 53, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
44 15 0.28
45 14 0.26
46 24 0.45
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (46 bp):
CAACTTCAGGGAGATAAGATTCACCAGCTTCATATCTGCCCCACTA
Found at i:15180934 original size:7 final size:7
Alignment explanation
Indices: 15180917--15180989 Score: 51
Period size: 7 Copynumber: 10.3 Consensus size: 7
15180907 TCTCCTTTTC
15180917 TTTTC-T
1 TTTTCTT
15180923 TTTTCTT
1 TTTTCTT
*
15180930 TTTTCAT
1 TTTTCTT
**
15180937 TTTGATT
1 TTTTCTT
*
15180944 TTAATTTTT
1 TT--TTCTT
15180953 TTTTCTT
1 TTTTCTT
15180960 TTTTCTT
1 TTTTCTT
15180967 TATTT-TT
1 T-TTTCTT
*
15180974 TTTCCTT
1 TTTTCTT
*
15180981 TTTTATT
1 TTTTCTT
15180988 TT
1 TT
15180990 CATTTTTTTG
Statistics
Matches: 52, Mismatches: 10, Indels: 9
0.73 0.14 0.13
Matches are distributed among these distances:
6 7 0.13
7 37 0.71
8 3 0.06
9 5 0.10
ACGTcount: A:0.08, C:0.10, G:0.01, T:0.81
Consensus pattern (7 bp):
TTTTCTT
Found at i:15180939 original size:13 final size:12
Alignment explanation
Indices: 15180912--15181011 Score: 60
Period size: 13 Copynumber: 7.9 Consensus size: 12
15180902 TGGCCTCTCC
*
15180912 TTTTCTTTTCT-
1 TTTTCTTTTTTA
15180923 TTTTCTTTTTTCA
1 TTTTCTTTTTT-A
** *
15180936 TTTTGATTTTAA
1 TTTTCTTTTTTA
*
15180948 TTTT-TTTTTCTT
1 TTTTCTTTTT-TA
*
15180960 TTTTCTTTATTTT
1 TTTTCTTT-TTTA
15180973 TTTTCCTTTTTTA
1 TTTT-CTTTTTTA
15180986 TTTTCATTTTTTTGA
1 TTTTC--TTTTTT-A
*
15181001 TTTTGTTTTTT
1 TTTTCTTTTTT
15181012 TTATTGATGA
Statistics
Matches: 71, Mismatches: 9, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
11 14 0.20
12 10 0.14
13 30 0.42
14 12 0.17
15 5 0.07
ACGTcount: A:0.08, C:0.09, G:0.03, T:0.80
Consensus pattern (12 bp):
TTTTCTTTTTTA
Done.