Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53248092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1300000 characters in sequence are not A, C, G, or T
File 54 of 175
Found at i:15772041 original size:20 final size:21
Alignment explanation
Indices: 15772004--15772046 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 21
15771994 CTTCTTTTTG
15772004 AATTTTTATGAACA-TTTTAT
1 AATTTTTATGAACATTTTTAT
* **
15772024 AATTTTTTTGAATGTTTTTAT
1 AATTTTTATGAACATTTTTAT
15772045 AA
1 AA
15772047 AATTTAAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.58
Consensus pattern (21 bp):
AATTTTTATGAACATTTTTAT
Found at i:15774543 original size:6 final size:6
Alignment explanation
Indices: 15774532--15774561 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
15774522 TCCGTTGCCA
15774532 TCTCTG TCTCTG TCTCTG TCTCTG TCTCTG
1 TCTCTG TCTCTG TCTCTG TCTCTG TCTCTG
15774562 CTTCTGAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.17, T:0.50
Consensus pattern (6 bp):
TCTCTG
Found at i:15775584 original size:16 final size:16
Alignment explanation
Indices: 15775558--15775597 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
15775548 GGGGGGAATG
*
15775558 GAATAGGGTTGTAAT-
1 GAATAGAGTTGTAATA
15775573 GAACTAGAGTTGTAATA
1 GAA-TAGAGTTGTAATA
15775590 GAATAGAG
1 GAATAGAG
15775598 CTATAATGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 3 0.14
16 16 0.73
17 3 0.14
ACGTcount: A:0.40, C:0.03, G:0.30, T:0.28
Consensus pattern (16 bp):
GAATAGAGTTGTAATA
Found at i:15775887 original size:15 final size:15
Alignment explanation
Indices: 15775844--15775912 Score: 59
Period size: 15 Copynumber: 4.5 Consensus size: 15
15775834 TTTTTTACTA
* **
15775844 AATAAAATTTAATAA
1 AATAAAATATAATTT
*
15775859 AATAATATATAATTT
1 AATAAAATATAATTT
15775874 AATAAAATATAATTATT
1 AATAAAATATAA-T-TT
*
15775891 ATTAAAATATGAA-TT
1 AATAAAATAT-AATTT
15775906 AATAAAA
1 AATAAAA
15775913 ATTATAATAT
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
15 30 0.68
16 1 0.02
17 11 0.25
18 2 0.05
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (15 bp):
AATAAAATATAATTT
Found at i:15791927 original size:13 final size:14
Alignment explanation
Indices: 15791909--15791943 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
15791899 AAAGATATAA
15791909 ATATATTT-CTTTT
1 ATATATTTACTTTT
15791922 ATATATTTACTTTT
1 ATATATTTACTTTT
*
15791936 AAATATTT
1 ATATATTT
15791944 TAATATACCC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (14 bp):
ATATATTTACTTTT
Found at i:15792627 original size:45 final size:44
Alignment explanation
Indices: 15792577--15792680 Score: 120
Period size: 44 Copynumber: 2.3 Consensus size: 44
15792567 AACATTTTTC
* ** * *
15792577 TATTTTTGAAATTTTGACCTATTATTTTAAATTTT-TAGAATTTA
1 TATTTTTGAAATTTTAAAAT-TTATTATAAATTTTCTAGAATGTA
* *
15792621 TAATTTTTAAAAATTTAAAATTTATTATAAATTTTCTAGAATGTA
1 T-ATTTTTGAAATTTTAAAATTTATTATAAATTTTCTAGAATGTA
15792666 TATTTTTGAAATTTT
1 TATTTTTGAAATTTT
15792681 CTAGAATTTA
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
44 26 0.53
45 23 0.47
ACGTcount: A:0.37, C:0.03, G:0.06, T:0.55
Consensus pattern (44 bp):
TATTTTTGAAATTTTAAAATTTATTATAAATTTTCTAGAATGTA
Found at i:15792635 original size:17 final size:16
Alignment explanation
Indices: 15792602--15792654 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 16
15792592 GACCTATTAT
*
15792602 TTTAAATTTTT-AGAA
1 TTTAAATTTTTAAAAA
15792617 TTTATAATTTTTAAAAA
1 TTTA-AATTTTTAAAAA
*
15792634 TTTAAAATTTATTATAAA
1 TTT-AAATTT-TTAAAAA
15792652 TTT
1 TTT
15792655 TCTAGAATGT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
15 4 0.12
16 7 0.22
17 11 0.34
18 10 0.31
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (16 bp):
TTTAAATTTTTAAAAA
Found at i:15793380 original size:20 final size:20
Alignment explanation
Indices: 15793355--15793395 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
15793345 AAATAACAAA
15793355 ATCTATAGT-TTTATATTATT
1 ATCTATA-TATTTATATTATT
*
15793375 ATCTATATATTTTTATTATT
1 ATCTATATATTTATATTATT
15793395 A
1 A
15793396 AATTTAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 1 0.05
20 18 0.95
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (20 bp):
ATCTATATATTTATATTATT
Found at i:15795550 original size:31 final size:31
Alignment explanation
Indices: 15795511--15795581 Score: 110
Period size: 31 Copynumber: 2.3 Consensus size: 31
15795501 AAAAGTTACA
*
15795511 ATTT-AGTCACTGAAC-TATTCAAAATTTTTC
1 ATTTAAGTCACTG-ACTTATTCAAAAGTTTTC
15795541 ATTTAAGTCACTGACTTATTCAAAAGTTTTC
1 ATTTAAGTCACTGACTTATTCAAAAGTTTTC
15795572 ATTTAAGTCA
1 ATTTAAGTCA
15795582 TTGGGATGTT
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
30 6 0.16
31 32 0.84
ACGTcount: A:0.34, C:0.15, G:0.08, T:0.42
Consensus pattern (31 bp):
ATTTAAGTCACTGACTTATTCAAAAGTTTTC
Found at i:15797252 original size:17 final size:18
Alignment explanation
Indices: 15797232--15797265 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
15797222 AGAAAAAAAA
15797232 TATTTT-TTTCAAAAATC
1 TATTTTCTTTCAAAAATC
*
15797249 TATTTTCTTTTAAAAAT
1 TATTTTCTTTCAAAAAT
15797266 TAAATAAATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.35, C:0.09, G:0.00, T:0.56
Consensus pattern (18 bp):
TATTTTCTTTCAAAAATC
Found at i:15797481 original size:72 final size:70
Alignment explanation
Indices: 15797345--15797482 Score: 161
Period size: 72 Copynumber: 1.9 Consensus size: 70
15797335 TCAAATGAAT
* * * *
15797345 ATTAAAACTAATAAAATCCGTTTCGGGATTTTCCCACCGTTTAACAGATTTTATTAGATTTTATT
1 ATTAAAACTAATAAAATCCATTTCGGGATTTTCCCACCGCTCAACAGATTTTATTACA-TTTATT
15797410 TCCAAA
65 TCCAAA
* * * *
15797416 ATTAAAAGTAAATAAAATCCATTTTGGGATTTATTCCCACCGCTCAACGGATTTTATTCCA-TTA
1 ATTAAAACT-AATAAAATCCATTTCGGGA-TT-TTCCCACCGCTCAACAGATTTTATTACATTTA
15797480 TTT
63 TTT
15797483 TAATTCTATT
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
71 8 0.14
72 23 0.41
73 2 0.04
74 23 0.41
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.39
Consensus pattern (70 bp):
ATTAAAACTAATAAAATCCATTTCGGGATTTTCCCACCGCTCAACAGATTTTATTACATTTATTT
CCAAA
Found at i:15797697 original size:80 final size:79
Alignment explanation
Indices: 15797514--15797796 Score: 350
Period size: 79 Copynumber: 3.6 Consensus size: 79
15797504 AATTAAAGGT
* ** * * *
15797514 AAATAAAATCCATTTCTAGAGTGAGTCCCGCCGTTTAACGATTTTATTCCAAATTTTGTTTTATT
1 AAATAAAATCCGTTTCGGGATTGATTCCCGCCGTTCAACGATTTTATTCCAAATTTTGTTTTATT
15797579 TCCAAAAACGAGTA
66 TCCAAAAACGAGTA
* ** * * * *
15797593 AAATAAAATCTGTTTCCAGATTGATTCCCACCGTTCAACAATTTTGTTCCACATTTTGTTTTATT
1 AAATAAAATCCGTTTCGGGATTGATTCCCGCCGTTCAACGATTTTATTCCAAATTTTGTTTTA-T
*
15797658 TTTCAAAAACGAGTA
65 TTCCAAAAACGAGTA
* * * *
15797673 AAATAAAATCCGTTTTGGGATTGATTCTCGCCGTTCAATGATTTTATTCTAAATTTTGTTTTATT
1 AAATAAAATCCGTTTCGGGATTGATTCCCGCCGTTCAACGATTTTATTCCAAATTTTGTTTTATT
15797738 TCCAAAAACGAGTA
66 TCCAAAAACGAGTA
* * * *
15797752 AAATAAAATTCATTTCGGGATTAATTCCTGCCGTTCAACGGATTT
1 AAATAAAATCCGTTTCGGGATTGATTCCCGCCGTTCAAC-GATTT
15797797 ATTACATTTT
Statistics
Matches: 172, Mismatches: 30, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
79 100 0.58
80 72 0.42
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (79 bp):
AAATAAAATCCGTTTCGGGATTGATTCCCGCCGTTCAACGATTTTATTCCAAATTTTGTTTTATT
TCCAAAAACGAGTA
Found at i:15797937 original size:84 final size:84
Alignment explanation
Indices: 15797764--15798236 Score: 585
Period size: 84 Copynumber: 5.7 Consensus size: 84
15797754 ATAAAATTCA
* * * * ** * *
15797764 TTTCGGGATTAATTCCTGCCGTTCAAC-GGA-TTTATTACATTTTAATTTTGTTGCCAAAAATGA
1 TTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTGATTTT-ATTTTGTTTCC--AAATTA
15797827 GAAATTAAATTAAATAAAATCTG
63 G-AATTAAATTAAATAAAATCTG
* *
15797850 TTTCAGAATTTATTCCCGCCGTTTAACAAGATTTTATTTGATTTTATTTTGTTTCCAAATTAGAA
1 TTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTGATTTTATTTTGTTTCCAAATTAGAA
15797915 -TATAATTAAATAAAA-CATG
66 TTA-AATTAAATAAAATC-TG
15797934 TTTCGGGATTTATT----CC-TTTAACAAGATTTTATTTGATTTTATTTTGTTTCCAAATTAGAA
1 TTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTGATTTTATTTTGTTTCCAAATTAGAA
15797994 -TATAATTAAAT---ATCTG
66 TTA-AATTAAATAAAATCTG
* * *
15798010 TTTCGGGATTTATTCCTGCCGTTTAATAAGATTTTATTTGATTTTATTTTGTTTCCAAATTTGAA
1 TTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTGATTTTATTTTGTTTCCAAATTAGAA
15798075 TTAAATTAAATAAAATCTG
66 TTAAATTAAATAAAATCTG
* * ** *
15798094 TTTTGAGATTTATTCCCATCGTTTAACAAGATTTTATTTGATTTTATTTTGTTTCCAAATTTGAA
1 TTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTGATTTTATTTTGTTTCCAAATTAGAA
*
15798159 TTGAATTAAATAAAATCTG
66 TTAAATTAAATAAAATCTG
* * * *
15798178 TTTCGGGATTTATTCCCGCCGTTGAACAAGATTTTATTCGATATTGTTTTGTTTCCAAA
1 TTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTGATTTTATTTTGTTTCCAAA
15798237 CAAAAACGTA
Statistics
Matches: 344, Mismatches: 29, Indels: 30
0.85 0.07 0.07
Matches are distributed among these distances:
76 17 0.05
77 1 0.00
79 55 0.16
80 4 0.01
81 50 0.15
82 2 0.01
83 3 0.01
84 161 0.47
85 6 0.02
86 22 0.06
87 12 0.03
88 11 0.03
ACGTcount: A:0.31, C:0.11, G:0.12, T:0.46
Consensus pattern (84 bp):
TTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTGATTTTATTTTGTTTCCAAATTAGAA
TTAAATTAAATAAAATCTG
Found at i:15798012 original size:160 final size:162
Alignment explanation
Indices: 15797828--15798236 Score: 571
Period size: 160 Copynumber: 2.5 Consensus size: 162
15797818 CAAAAATGAG
* * *
15797828 AAATTA-AATTAAATAAA-ATCTGTTTCAGAATTTATTCCCGCCGTTTAACAAGATTTTATTTGA
1 AAATTAGAATTAATTAAATATCTGTTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTGA
*
15797891 TTTTATTTTGTTTCCAAATTAGAA-TATAATTAAATAAAA-CATGTTTCGGGATTTATT-C-C-T
66 TTTTATTTTGTTTCCAAATTAGAATTA-AATTAAATAAAATC-TGTTTCGAGATTTATTCCACGT
15797951 TTAACAAGATTTTATTTGATTTTATTTTGTTTCC
129 TTAACAAGATTTTATTTGATTTTATTTTGTTTCC
* *
15797985 AAATTAGAATATAATTAAATATCTGTTTCGGGATTTATTCCTGCCGTTTAATAAGATTTTATTTG
1 AAATTAGAAT-TAATTAAATATCTGTTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTG
* *
15798050 ATTTTATTTTGTTTCCAAATTTGAATTAAATTAAATAAAATCTGTTTTGAGATTTATTCCCATCG
65 ATTTTATTTTGTTTCCAAATTAGAATTAAATTAAATAAAATCTGTTTCGAGATTTATT-CCA-CG
15798115 TTTAACAAGATTTTATTTGATTTTATTTTGTTTCC
128 TTTAACAAGATTTTATTTGATTTTATTTTGTTTCC
* *
15798150 AAATTTGAATTGAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTGAACAAGATTTTAT
1 AAATTAGAATT-AATTAAAT---ATCTGTTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTAT
* * *
15798215 TCGATATTGTTTTGTTTCCAAA
62 TTGATTTTATTTTGTTTCCAAA
15798237 CAAAAACGTA
Statistics
Matches: 223, Mismatches: 15, Indels: 17
0.87 0.06 0.07
Matches are distributed among these distances:
157 6 0.03
158 3 0.01
159 7 0.03
160 91 0.41
161 3 0.01
162 1 0.00
164 2 0.01
165 52 0.23
168 58 0.26
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (162 bp):
AAATTAGAATTAATTAAATATCTGTTTCGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTGA
TTTTATTTTGTTTCCAAATTAGAATTAAATTAAATAAAATCTGTTTCGAGATTTATTCCACGTTT
AACAAGATTTTATTTGATTTTATTTTGTTTCC
Found at i:15800458 original size:19 final size:19
Alignment explanation
Indices: 15800434--15800471 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
15800424 TACCATTAAA
*
15800434 CAAATGATCTCAAATGGAG
1 CAAATGATCTCAAACGGAG
15800453 CAAATGATCTCAAACGGAG
1 CAAATGATCTCAAACGGAG
15800472 TTATCTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.18, G:0.21, T:0.18
Consensus pattern (19 bp):
CAAATGATCTCAAACGGAG
Found at i:15803851 original size:13 final size:13
Alignment explanation
Indices: 15803833--15803859 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
15803823 CCACCTTAGA
15803833 AATCCAACCATAT
1 AATCCAACCATAT
15803846 AATCCAACCATAT
1 AATCCAACCATAT
15803859 A
1 A
15803860 CTTTTATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.30, G:0.00, T:0.22
Consensus pattern (13 bp):
AATCCAACCATAT
Found at i:15804739 original size:16 final size:16
Alignment explanation
Indices: 15804718--15804763 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
15804708 TTATTAAATT
15804718 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
15804734 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
15804749 AT-TATGTTAAATTAT
1 ATATAT-TTTAATTAT
15804764 CTATATTATG
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 12 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:15804772 original size:107 final size:107
Alignment explanation
Indices: 15804658--15804860 Score: 370
Period size: 107 Copynumber: 1.9 Consensus size: 107
15804648 TATAGTATTA
* * *
15804658 TATATTATGATTTTAGTAAATTCATATAAGAATGTTGATTATTAAGAATTTTATTAAATTATATA
1 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATA
15804723 TTTTAATTATAATATATTTAATAATAATTATGTTAAATTATC
66 TTTTAATTATAATATATTTAATAATAATTATGTTAAATTATC
15804765 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATA
1 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATA
*
15804830 TTTTAATTATAATATATTTAATAATTATTAT
66 TTTTAATTATAATATATTTAATAATAATTAT
15804861 ATTTAAATAT
Statistics
Matches: 92, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
107 92 1.00
ACGTcount: A:0.43, C:0.01, G:0.06, T:0.50
Consensus pattern (107 bp):
TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATA
TTTTAATTATAATATATTTAATAATAATTATGTTAAATTATC
Found at i:15804854 original size:18 final size:17
Alignment explanation
Indices: 15804824--15804866 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 17
15804814 TTTATTAAAT
15804824 TATATATTT--TAATTA
1 TATATATTTAATAATTA
15804839 TAATATATTTAATAATTA
1 T-ATATATTTAATAATTA
15804857 T-TATATTTAA
1 TATATATTTAA
15804867 ATATGATTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 1 0.04
16 17 0.68
18 7 0.28
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TATATATTTAATAATTA
Found at i:15805092 original size:45 final size:44
Alignment explanation
Indices: 15804992--15805101 Score: 133
Period size: 45 Copynumber: 2.6 Consensus size: 44
15804982 TTTTCCATTA
15804992 TGCTATTACACCTCTATT-C----CATTCAACCAAACATAAGAT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACATAAGAT
* * *
15805031 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGT-TGATT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACA-TAAGA-T
15805076 TGCTATTACACCTCTATTCCATTACA
1 TGCTATTACACCTCTATTCCATTACA
15805102 CCTCTAATCC
Statistics
Matches: 59, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
39 16 0.27
40 1 0.02
44 16 0.27
45 26 0.44
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (44 bp):
TGCTATTACACCTCTATTCCATTACATTCAACCAAACATAAGAT
Found at i:15805101 original size:16 final size:16
Alignment explanation
Indices: 15805082--15805149 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
15805072 GATTTGCTAT
* *
15805082 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
15805098 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
15805114 TACACCTCCAATCCAA
1 TACACCTCTAATCCAA
15805130 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
15805146 TACA
1 TACA
15805150 GCGAAGCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.35, C:0.38, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:15813256 original size:23 final size:23
Alignment explanation
Indices: 15813216--15813259 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
15813206 TTCTTACTGC
*
15813216 AGTAATTTTCGGGGTATTACAGT
1 AGTAATTTTCGGGATATTACAGT
* *
15813239 AGTAATTTTTGGTATATTACA
1 AGTAATTTTCGGGATATTACA
15813260 TGCGCCTAGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (23 bp):
AGTAATTTTCGGGATATTACAGT
Found at i:15825298 original size:61 final size:61
Alignment explanation
Indices: 15825216--15825362 Score: 169
Period size: 58 Copynumber: 2.5 Consensus size: 61
15825206 TTTTAATAAG
*
15825216 ATTAATATTAAATATAATTTAATAAAAAAACAATAAATAATTTAATCATAATT-TTAACATA
1 ATTATTATTAAATATAATTTAATAAAAAAACAATAAATAATTTAATCA-AATTCTTAACATA
* * * * * *
15825277 ATTATTATTAAATACAATTTAAT---AAAACAATATATAGTTTAATGACATTCTTAATATA
1 ATTATTATTAAATATAATTTAATAAAAAAACAATAAATAATTTAATCAAATTCTTAACATA
*
15825335 ATAATTATTAAAATATAA-TTAATAAAAA
1 ATTATTATT-AAATATAATTTAATAAAAA
15825363 TCATAATATA
Statistics
Matches: 72, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
57 3 0.04
58 39 0.54
59 7 0.10
61 23 0.32
ACGTcount: A:0.55, C:0.05, G:0.01, T:0.39
Consensus pattern (61 bp):
ATTATTATTAAATATAATTTAATAAAAAAACAATAAATAATTTAATCAAATTCTTAACATA
Found at i:15827280 original size:24 final size:24
Alignment explanation
Indices: 15827233--15827282 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
15827223 TCAAACTAGA
*
15827233 AAAAAAATAAACAAATGCTGAATT
1 AAAAAAATAAACAAATGCTAAATT
*
15827257 AAAAAAA-AAACAAGTGCATAAATT
1 AAAAAAATAAACAAATGC-TAAATT
15827281 AA
1 AA
15827283 GAATTATTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 9 0.39
24 14 0.61
ACGTcount: A:0.66, C:0.08, G:0.08, T:0.18
Consensus pattern (24 bp):
AAAAAAATAAACAAATGCTAAATT
Found at i:15828309 original size:6 final size:6
Alignment explanation
Indices: 15828300--15828337 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
15828290 TAAGTATAAG
*
15828300 AAAATA AAAAGA AAAAGA AAAAG- AAAAGA AAAAGA AAA
1 AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAA
15828338 CAAATAAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
5 5 0.17
6 25 0.83
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (6 bp):
AAAAGA
Found at i:15828313 original size:11 final size:11
Alignment explanation
Indices: 15828297--15828337 Score: 64
Period size: 11 Copynumber: 3.6 Consensus size: 11
15828287 AAATAAGTAT
*
15828297 AAGAAAATAAA
1 AAGAAAAGAAA
15828308 AAGAAAAAGAAA
1 AAG-AAAAGAAA
15828320 AAGAAAAGAAA
1 AAGAAAAGAAA
15828331 AAGAAAA
1 AAGAAAA
15828338 CAAATAAACT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
11 18 0.64
12 10 0.36
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (11 bp):
AAGAAAAGAAA
Found at i:15828319 original size:17 final size:17
Alignment explanation
Indices: 15828297--15828337 Score: 66
Period size: 17 Copynumber: 2.4 Consensus size: 17
15828287 AAATAAGTAT
15828297 AAGAAAATA-AAAAGAAA
1 AAGAAAA-AGAAAAGAAA
15828314 AAGAAAAAGAAAAGAAA
1 AAGAAAAAGAAAAGAAA
15828331 AAGAAAA
1 AAGAAAA
15828338 CAAATAAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 1 0.04
17 22 0.96
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (17 bp):
AAGAAAAAGAAAAGAAA
Found at i:15830735 original size:85 final size:84
Alignment explanation
Indices: 15830593--15830771 Score: 279
Period size: 85 Copynumber: 2.1 Consensus size: 84
15830583 GTTACTCGGA
*
15830593 GGATTCAGCACTTAGCAACCACCTTAAATTCAGTGATGCGGGGAATCAGCACATAGCAACCCCTT
1 GGATTCAGCACTTAGCAACCACCTTAAATTCAGTGATACGGGGAATCAGCACATAGCAACCCCTT
*
15830658 TCACAGTAAAAAATACGGT
66 TCACAATAAAAAATACGGT
*
15830677 GGATTCAGCACTTAGCAACCACCTTTATATTCAGT-AGTACGGGGAATCAGCACATAGCAACCCC
1 GGATTCAGCACTTAGCAACCACC-TTAAATTCAGTGA-TACGGGGAATCAGCACATAGCAACCCC
* *
15830741 TTTCACAATCAAAGATACGGT
64 TTTCACAATAAAAAATACGGT
*
15830762 GGAATCAGCA
1 GGATTCAGCA
15830772 GCAACCCCCT
Statistics
Matches: 87, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
84 24 0.28
85 63 0.72
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (84 bp):
GGATTCAGCACTTAGCAACCACCTTAAATTCAGTGATACGGGGAATCAGCACATAGCAACCCCTT
TCACAATAAAAAATACGGT
Found at i:15830760 original size:42 final size:43
Alignment explanation
Indices: 15830634--15830771 Score: 165
Period size: 43 Copynumber: 3.2 Consensus size: 43
15830624 AGTGATGCGG
* * *
15830634 GGAATCAGCACATAGCAACCCCTTTCACAGTAAAAAATACGGT
1 GGAATCAGCACATAGCAACCCCTTTCACAATCAAAGATACGGT
* * * * *
15830677 GGATTCAGCACTTAGCAACCACCTTT-ATATTCAGTAG-TACGG-
1 GGAATCAGCACATAGCAACC-CCTTTCACAATCA-AAGATACGGT
15830719 GGAATCAGCACATAGCAACCCCTTTCACAATCAAAGATACGGT
1 GGAATCAGCACATAGCAACCCCTTTCACAATCAAAGATACGGT
15830762 GGAATCAGCA
1 GGAATCAGCA
15830772 GCAACCCCCT
Statistics
Matches: 78, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
41 7 0.09
42 28 0.36
43 37 0.47
44 6 0.08
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (43 bp):
GGAATCAGCACATAGCAACCCCTTTCACAATCAAAGATACGGT
Found at i:15837885 original size:159 final size:159
Alignment explanation
Indices: 15837595--15837892 Score: 470
Period size: 159 Copynumber: 1.9 Consensus size: 159
15837585 CCATCATCCA
* ***
15837595 TTTTTTTCTTCTTTGAAGATGTGAAACCATCTTAGTTTGGCTTCGGTGGTTGCGATTGTGTAAAT
1 TTTTTTTCTTCTTTGAAAATGTGAAACCATCTTAGTTTGGCTTCAACGGTTGCGATTGTGTAAAT
* * *
15837660 GAGACATCCATCTCATCCAAGGAAACATCATCTTCGCATCCACGGTAATTGTTTCTTTCTTCAAG
66 GAAACATCCATCTCATCCAAGGAAACATCATCTTCGCATCCACGGTAATTGTTTCCTGCTTCAAG
15837725 ATTATTTGCAATAGTTACATCAAAAATCT
131 ATTATTTGCAATAGTTACATCAAAAATCT
* * * **
15837754 TTTTTTTCTTCTTTGAAAATGTGGAACCATCTTGGTTTGGCTTCAACGGTTGTGATTGTGTAGTT
1 TTTTTTTCTTCTTTGAAAATGTGAAACCATCTTAGTTTGGCTTCAACGGTTGCGATTGTGTAAAT
* *
15837819 GAAACATCCATCTCATCCAAGGAAACATCATCTTCGCATCCATGGTAATTGTTTCCTGCTTTAAG
66 GAAACATCCATCTCATCCAAGGAAACATCATCTTCGCATCCACGGTAATTGTTTCCTGCTTCAAG
15837884 ATTATTTGC
131 ATTATTTGC
15837893 TGTAGCTACA
Statistics
Matches: 125, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
159 125 1.00
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (159 bp):
TTTTTTTCTTCTTTGAAAATGTGAAACCATCTTAGTTTGGCTTCAACGGTTGCGATTGTGTAAAT
GAAACATCCATCTCATCCAAGGAAACATCATCTTCGCATCCACGGTAATTGTTTCCTGCTTCAAG
ATTATTTGCAATAGTTACATCAAAAATCT
Found at i:15842267 original size:19 final size:18
Alignment explanation
Indices: 15842221--15842268 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
15842211 GTCTGGGACT
15842221 AATTTGAAAAAAATAGAA
1 AATTTGAAAAAAATAGAA
* * *
15842239 TATTTGGAAAAAAGTTGCAA
1 AATTT-GAAAAAAATAG-AA
15842259 AATTTGAAAA
1 AATTTGAAAA
15842269 CATGGGTCAC
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 4 0.17
19 14 0.58
20 6 0.25
ACGTcount: A:0.56, C:0.02, G:0.15, T:0.27
Consensus pattern (18 bp):
AATTTGAAAAAAATAGAA
Found at i:15843679 original size:26 final size:26
Alignment explanation
Indices: 15843614--15843680 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 26
15843604 GTATTTGACA
*
15843614 AATTAAATTATAAATATTTCTATTTAT
1 AATT-AATTATATATATTTCTATTTAT
* * *
15843641 ATTTTATTTTATATATGTT-TATTTAT
1 AATTAATTATATATAT-TTCTATTTAT
15843667 AATTAATTATATAT
1 AATTAATTATATAT
15843681 TCGCTAACGT
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
26 27 0.84
27 5 0.16
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.58
Consensus pattern (26 bp):
AATTAATTATATATATTTCTATTTAT
Found at i:15844052 original size:89 final size:81
Alignment explanation
Indices: 15843949--15844419 Score: 305
Period size: 79 Copynumber: 5.7 Consensus size: 81
15843939 ATTTTGTTTT
**
15843949 AAAATTAAAAGTAAATAAAATCCGTTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATTTCAT
1 AAAATT-AAAGTAAATAAAATCCGTTTCGGGATTGGTTCCCGCCGTTCAAC-GATTTTATTTCA-
*
15844014 TATTTTGATTTTATTTTCAA
63 AATTTTG-TTTTATTTTCAA
* * * ** * *
15844034 ATGGGAAATTAAAGGTAAACAAAATTCGTTTTGGGATTGGTTCCTACCGTTCAATGATTTTATTC
1 A----AAATTAAA-GTAAATAAAATCCGTTTCGGGATTGGTTCCCGCCGTTCAACGATTTTATTT
*
15844099 CAAATTTTGTTTTA-TTTCCA
61 CAAATTTTGTTTTATTTTCAA
* * * *
15844119 AAAACT--AGTAAAATAAAATCCGTTTCGGAATTGGTTTCCGTCGTTCAACGATTTTATTTCAAA
1 AAAATTAAAGT-AAATAAAATCCGTTTCGGGATTGGTTCCCGCCGTTCAACGATTTTATTTCAAA
*
15844182 TTTTGTTTTA-TTTCCA
65 TTTTGTTTTATTTTCAA
* ** * * ** * *
15844198 AAAA--CAAGTAAAATAAAATTTGTTTTGGGATTGATTTTCGCCGTTCAACAATTTTATTCCAAA
1 AAAATTAAAGT-AAATAAAATCCGTTTCGGGATTGGTTCCCGCCGTTCAACGATTTTATTTCAAA
* *
15844261 TTTTGTTTTA-TTGCCA
65 TTTTGTTTTATTTTCAA
* * ** * * * * *
15844277 AAAA-T-GAGTAAAATAAAATCCATTTTAGGATTGATTCTCACCATTCAACGATTTTA-TTCCAA
1 AAAATTAAAGT-AAATAAAATCCGTTTCGGGATTGGTTCCCGCCGTTCAACGATTTTATTTCAAA
*
15844339 TTTTGATTTTATTTCCAA
65 TTTTG-TTTTATTTTCAA
* * * **
15844357 AACTGAGTATTAAAATTAATTTAAAATCTGTTTCGGGATTTATTCCCGCCGTTCAACGGATTT
1 AA---A--ATT-AAAGTAA-ATAAAATCCGTTTCGGGATTGGTTCCCGCCGTTCAAC-GATTT
15844420 ATTACATTTT
Statistics
Matches: 309, Mismatches: 56, Indels: 38
0.77 0.14 0.09
Matches are distributed among these distances:
78 11 0.04
79 178 0.58
80 6 0.02
81 4 0.01
83 1 0.00
85 8 0.03
86 6 0.02
87 8 0.03
88 44 0.14
89 43 0.14
ACGTcount: A:0.32, C:0.14, G:0.13, T:0.41
Consensus pattern (81 bp):
AAAATTAAAGTAAATAAAATCCGTTTCGGGATTGGTTCCCGCCGTTCAACGATTTTATTTCAAAT
TTTGTTTTATTTTCAA
Found at i:15844143 original size:79 final size:79
Alignment explanation
Indices: 15844054--15844358 Score: 377
Period size: 79 Copynumber: 3.9 Consensus size: 79
15844044 AAAGGTAAAC
* * *
15844054 AAAATTCGTTTTGGGATTGGTTC-CTACCGTTCAATGATTTTATTCCAAATTTTGTTTTATTTCC
1 AAAATCCGTTTTGGGATTGATTCTC-ACCGTTCAACGATTTTATTCCAAATTTTGTTTTATTTCC
15844118 AAAAACTAGTAAAAT
65 AAAAACTAGTAAAAT
* * * *
15844133 AAAATCCGTTTCGGAATTGGTT-TC-CGTCGTTCAACGATTTTATTTCAAATTTTGTTTTATTTC
1 AAAATCCGTTTTGGGATTGATTCTCAC--CGTTCAACGATTTTATTCCAAATTTTGTTTTATTTC
*
15844196 CAAAAACAAGTAAAAT
64 CAAAAACTAGTAAAAT
** * * * *
15844212 AAAATTTGTTTTGGGATTGATTTTCGCCGTTCAACAATTTTATTCCAAATTTTGTTTTATTGCCA
1 AAAATCCGTTTTGGGATTGATTCTCACCGTTCAACGATTTTATTCCAAATTTTGTTTTATTTCCA
15844277 AAAA-TGAGTAAAAT
66 AAAACT-AGTAAAAT
* * *
15844291 AAAATCCATTTTAGGATTGATTCTCACCATTCAACGATTTTATTCC-AATTTTGATTTTATTTCC
1 AAAATCCGTTTTGGGATTGATTCTCACCGTTCAACGATTTTATTCCAAATTTTG-TTTTATTTCC
15844355 AAAA
65 AAAA
15844359 CTGAGTATTA
Statistics
Matches: 195, Mismatches: 24, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
77 1 0.01
78 7 0.04
79 184 0.94
80 2 0.01
81 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.42
Consensus pattern (79 bp):
AAAATCCGTTTTGGGATTGATTCTCACCGTTCAACGATTTTATTCCAAATTTTGTTTTATTTCCA
AAAACTAGTAAAAT
Found at i:15844497 original size:86 final size:87
Alignment explanation
Indices: 15844299--15844582 Score: 360
Period size: 86 Copynumber: 3.3 Consensus size: 87
15844289 ATAAAATCCA
* * * * * * *
15844299 TTTT-AGGATTGATTCTCACCATTCAAC-GATTTTATTCCAATTTTGATTTTATTTCCAAAACTG
1 TTTTCAGGATTTATTCCCACCGTTCAACGGA-TTTATTAC-ATTTTGATTTTGTTGCCAAAAATG
* *
15844362 AG-TATTAAAATTAATTTAAAATCT
64 AGAAATTAAAATTAA-TTAAAATAT
* * * *
15844386 GTTTCGGGATTTATTCCCGCCGTTCAACGGATTTATTACATTTTGATTTTGTTGCAAAAAATGAG
1 TTTTCAGGATTTATTCCCACCGTTCAACGGATTTATTACATTTTGATTTTGTTGCCAAAAATGAG
* *
15844451 AAATTAAAATTAAAT-AAATTT
66 AAATTAAAATTAATTAAAATAT
15844472 TTTTCAGGATTTATTCCCACCGTTCAACGGATTTATTACATTTTGATTTTGTTGCCAAAAATGAG
1 TTTTCAGGATTTATTCCCACCGTTCAACGGATTTATTACATTTTGATTTTGTTGCCAAAAATGAG
15844537 AAATTAAAATTAATTAAAATAT
66 AAATTAAAATTAATTAAAATAT
* *
15844559 ATTTCGGGATTTATTCCCACCGTT
1 TTTTCAGGATTTATTCCCACCGTT
15844583 TAATAAGATT
Statistics
Matches: 171, Mismatches: 22, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
86 80 0.47
87 53 0.31
88 36 0.21
89 2 0.01
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.42
Consensus pattern (87 bp):
TTTTCAGGATTTATTCCCACCGTTCAACGGATTTATTACATTTTGATTTTGTTGCCAAAAATGAG
AAATTAAAATTAATTAAAATAT
Found at i:15844641 original size:84 final size:86
Alignment explanation
Indices: 15844338--15844698 Score: 322
Period size: 86 Copynumber: 4.2 Consensus size: 86
15844328 TTTTATTCCA
* * * * *
15844338 ATTTTGATTTTATTTCCAAAACTGAG-TATTAAAATTAATTTAAAATCTGTTTCGGGATTTATTC
1 ATTTT-ATTTTGTTTCCAAAA-TGAGAAATTAAAATTAA-ATAAAATATTTTTCGGGATTTATTC
* * * **
15844402 CCGCCGTTCAACGGA-TTTATTAC
63 CCACCGTTTAACAGATTTTATTTT
* * * *
15844425 ATTTTGATTTTGTTGCAAAAAATGAGAAATTAAAATTAAAT-AAATTTTTTTCAGGATTTATTCC
1 ATTTT-ATTTTGTTTC-CAAAATGAGAAATTAAAATTAAATAAAATATTTTTCGGGATTTATTCC
* * **
15844489 CACCGTTCAACGGA-TTTATTAC
64 CACCGTTTAACAGATTTTATTTT
* * *
15844511 ATTTTGATTTTGTTGCCAAAAATGAGAAATTAAAATTAATTAAAATATATTTCGGGATTTATTCC
1 ATTTT-ATTTTGTTTCC-AAAATGAGAAATTAAAATTAAATAAAATATTTTTCGGGATTTATTCC
*
15844576 CACCGTTTAATAAGATTTTATTTT
64 CACCGTTTAA-CAGATTTTATTTT
* * * * *
15844600 ATTTTATTTTGTTTCC-AAATTAG-AATT-CAATTAAATAAAATATTTTTTGGGATTCATTCTCA
1 ATTTTATTTTGTTTCCAAAATGAGAAATTAAAATTAAATAAAATATTTTTCGGGATTTATTCCCA
*
15844662 CCGTTTAACATATTTTATTTT
66 CCGTTTAACAGATTTTATTTT
* *
15844683 GATATAATTTTGTTTC
1 -ATTTTATTTTGTTTC
15844699 GGGATTTAAT
Statistics
Matches: 236, Mismatches: 31, Indels: 17
0.83 0.11 0.06
Matches are distributed among these distances:
83 11 0.05
84 50 0.21
85 4 0.02
86 85 0.36
87 48 0.20
88 27 0.11
89 11 0.05
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.45
Consensus pattern (86 bp):
ATTTTATTTTGTTTCCAAAATGAGAAATTAAAATTAAATAAAATATTTTTCGGGATTTATTCCCA
CCGTTTAACAGATTTTATTTT
Found at i:15844647 original size:173 final size:172
Alignment explanation
Indices: 15844299--15844663 Score: 402
Period size: 173 Copynumber: 2.1 Consensus size: 172
15844289 ATAAAATCCA
* * * *
15844299 TTTTAGGATTGATTCTCACCATTCAACGATTTTATTCCAATTTTGATTTTATTTCCAAAACTGAG
1 TTTTAGGATTGATTCCCACCATTCAACGATTTTATTACAATTTTGATTTTATTGCCAAAAATGAG
* * * * **
15844364 TATTAAAATTAATTTAAAATCTGTTTCGGGATTTATTCCCGCCGTTCAACGGATTTATTACATTT
66 AATTAAAATTAATTTAAAATATATTTCGGGATTTATTCCCACCGTTCAAAAGATTTATTACATTT
15844429 TGATTTTGTTGCAAAAAATGAGAAATTAAAATTAAATAAATTT
131 TGATTTTGTTGC-AAAAATGAGAAATTAAAATTAAATAAATTT
* * *
15844472 TTTTCAGGATTTATTCCCACCGTTCAACGGA-TTTATTAC-ATTTTGATTTTGTTGCCAAAAATG
1 TTTT-AGGATTGATTCCCACCATTCAAC-GATTTTATTACAATTTTGATTTTATTGCCAAAAATG
* *
15844535 AGAAATTAAAATTAA-TTAAAATATATTTCGGGATTTATTCCCACCGTTTAATAAGATTTTATTT
64 AG-AATTAAAATTAATTTAAAATATATTTCGGGATTTATTCCCACCGTTCAA-AAGA-TTTATTA
* * * * *
15844599 TATTTT-ATTTTGTTTC-CAAATTAG-AATT-CAATTAAATAAAATATT
126 CATTTTGATTTTGTTGCAAAAATGAGAAATTAAAATTAAAT-AAAT-TT
* * *
15844644 TTTTGGGATTCATTCTCACC
1 TTTTAGGATTGATTCCCACC
15844664 GTTTAACATA
Statistics
Matches: 162, Mismatches: 23, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
170 8 0.05
171 21 0.13
172 12 0.07
173 59 0.36
174 49 0.30
175 13 0.08
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.43
Consensus pattern (172 bp):
TTTTAGGATTGATTCCCACCATTCAACGATTTTATTACAATTTTGATTTTATTGCCAAAAATGAG
AATTAAAATTAATTTAAAATATATTTCGGGATTTATTCCCACCGTTCAAAAGATTTATTACATTT
TGATTTTGTTGCAAAAATGAGAAATTAAAATTAAATAAATTT
Found at i:15855106 original size:11 final size:11
Alignment explanation
Indices: 15855090--15855114 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
15855080 AAACTATGTG
15855090 TTTTCTTTTTC
1 TTTTCTTTTTC
15855101 TTTTCTTTTTC
1 TTTTCTTTTTC
15855112 TTT
1 TTT
15855115 GTGATCGTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTCTTTTTC
Found at i:15863346 original size:33 final size:33
Alignment explanation
Indices: 15863290--15863422 Score: 104
Period size: 30 Copynumber: 4.2 Consensus size: 33
15863280 ACATAACATG
* * * *
15863290 CAGTAACAGTCTGGGACTAAGCCCTATT-CAGTAG
1 CAGT-ACAGTGTGGGCCTTAGCCC-ATTACAGTAA
*
15863324 TAGTACAGTGTGGGCCTTAGCCCATTACAGTAA
1 CAGTACAGTGTGGGCCTTAGCCCATTACAGTAA
* *
15863357 CAGT---GTGTGGGCCTTAGCCCAATACAATAA
1 CAGTACAGTGTGGGCCTTAGCCCATTACAGTAA
*
15863387 C---A-A-TGTGGGCCTTAGCCCAATACAGTAA
1 CAGTACAGTGTGGGCCTTAGCCCATTACAGTAA
15863415 TCAGTACA
1 -CAGTACA
15863423 ATGCAGTAAT
Statistics
Matches: 82, Mismatches: 9, Indels: 17
0.76 0.08 0.16
Matches are distributed among these distances:
28 24 0.29
29 1 0.01
30 25 0.30
32 4 0.05
33 25 0.30
34 3 0.04
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (33 bp):
CAGTACAGTGTGGGCCTTAGCCCATTACAGTAA
Found at i:15863367 original size:30 final size:30
Alignment explanation
Indices: 15863331--15863419 Score: 128
Period size: 30 Copynumber: 3.0 Consensus size: 30
15863321 TAGTAGTACA
*
15863331 GTGTGGGCCTTAGCCCATTACAGTAACAGT
1 GTGTGGGCCTTAGCCCAATACAGTAACAGT
*
15863361 GTGTGGGCCTTAGCCCAATACAATAACA--
1 GTGTGGGCCTTAGCCCAATACAGTAACAGT
*
15863389 ATGTGGGCCTTAGCCCAATACAGTAATCAGT
1 GTGTGGGCCTTAGCCCAATACAGTAA-CAGT
15863420 ACAATGCAGT
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
28 24 0.46
29 2 0.04
30 26 0.50
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.25
Consensus pattern (30 bp):
GTGTGGGCCTTAGCCCAATACAGTAACAGT
Found at i:15863402 original size:28 final size:29
Alignment explanation
Indices: 15863328--15863410 Score: 116
Period size: 28 Copynumber: 2.9 Consensus size: 29
15863318 CAGTAGTAGT
* *
15863328 ACAG-TGTGGGCCTTAGCCCATTACAGTA
1 ACAGATGTGGGCCTTAGCCCAATACAATA
*
15863356 ACAGTGTGTGGGCCTTAGCCCAATACAATA
1 ACAG-ATGTGGGCCTTAGCCCAATACAATA
15863386 ACA-ATGTGGGCCTTAGCCCAATACA
1 ACAGATGTGGGCCTTAGCCCAATACA
15863411 GTAATCAGTA
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
28 25 0.50
30 25 0.50
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (29 bp):
ACAGATGTGGGCCTTAGCCCAATACAATA
Found at i:15863582 original size:26 final size:26
Alignment explanation
Indices: 15863519--15863601 Score: 94
Period size: 26 Copynumber: 3.2 Consensus size: 26
15863509 GCCAACACAC
* *
15863519 CAATATCGCAACAAAGTTGCCAGTAA
1 CAATAACGCAACAAAGCTGCCAGTAA
* * * *
15863545 TAATGACACAACAAAGCTGTCAGTAA
1 CAATAACGCAACAAAGCTGCCAGTAA
* *
15863571 CAGTAACGCAACGAAGCTGCCAGTAA
1 CAATAACGCAACAAAGCTGCCAGTAA
15863597 CAATA
1 CAATA
15863602 TATATGGCAA
Statistics
Matches: 44, Mismatches: 13, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.43, C:0.23, G:0.17, T:0.17
Consensus pattern (26 bp):
CAATAACGCAACAAAGCTGCCAGTAA
Found at i:15863968 original size:81 final size:82
Alignment explanation
Indices: 15863776--15864026 Score: 282
Period size: 81 Copynumber: 3.1 Consensus size: 82
15863766 GGGTATAACA
* * * **
15863776 GTCATTTTACCCTATAG-GGGTATTTTGGTCATTTTA-CCTTTTAGGGGTATTTCGGTCATTTTA
1 GTCATTTTACCC-ATCGAGGGTATTTCGGTCATTTTACCCTTCTA-GGGTATTTTAGTCATTTTA
*
15863839 -CCATTCG-GGACGTATTTTG
64 CCCATTCGAGG--GTATTTCG
* * * *
15863858 ATCATTTTACCCTTC-AGGAGTATTTCGGTCATTTTACCCTTCTAGGGTATTTTTGTTATTTTAC
1 GTCATTTTACCCATCGAGG-GTATTTCGGTCATTTTACCCTTCTAGGGTATTTTAGTCATTTTAC
15863922 CCATT-GAGGGTATTTCG
65 CCATTCGAGGGTATTTCG
* *
15863939 GTCATTTTACCCATCGAGGGTATTTCGGTCATTTTACCCATCGAGGGTATTTTAGTCATTTTACC
1 GTCATTTTACCCATCGAGGGTATTTCGGTCATTTTACCCTTCTAGGGTATTTTAGTCATTTTACC
* *
15864004 C-TTCGAGAGTATTTCT
66 CATTCGAGGGTATTTCG
15864020 GTCATTT
1 GTCATTT
15864027 GCCCACGAAT
Statistics
Matches: 145, Mismatches: 17, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
80 2 0.01
81 83 0.57
82 47 0.32
83 13 0.09
ACGTcount: A:0.18, C:0.18, G:0.19, T:0.44
Consensus pattern (82 bp):
GTCATTTTACCCATCGAGGGTATTTCGGTCATTTTACCCTTCTAGGGTATTTTAGTCATTTTACC
CATTCGAGGGTATTTCG
Found at i:15864009 original size:27 final size:27
Alignment explanation
Indices: 15863776--15864026 Score: 253
Period size: 27 Copynumber: 9.3 Consensus size: 27
15863766 GGGTATAACA
*
15863776 GTCATTTTACCCTATAG-GGGTATTTTG
1 GTCATTTTACCCT-TCGAGGGTATTTTG
** *
15863803 GTCATTTTA-CCTTTTAGGGGTATTTCG
1 GTCATTTTACCCTTCGA-GGGTATTTTG
*
15863830 GTCATTTTACCATTCG-GGACGTATTTTG
1 GTCATTTTACCCTTCGAGG--GTATTTTG
* *
15863858 ATCATTTTACCCTTC-AGGAGTATTTCG
1 GTCATTTTACCCTTCGAGG-GTATTTTG
* *
15863885 GTCATTTTACCCTTCTAGGGTATTTTT
1 GTCATTTTACCCTTCGAGGGTATTTTG
* *
15863912 GTTATTTTACCCATT-GAGGGTATTTCG
1 GTCATTTTACCC-TTCGAGGGTATTTTG
* *
15863939 GTCATTTTACCCATCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTTG
* *
15863966 GTCATTTTACCCATCGAGGGTATTTTA
1 GTCATTTTACCCTTCGAGGGTATTTTG
*
15863993 GTCATTTTACCCTTCGAGAGTATTTCT-
1 GTCATTTTACCCTTCGAGGGTATTT-TG
15864020 GTCATTT
1 GTCATTT
15864027 GCCCACGAAT
Statistics
Matches: 190, Mismatches: 24, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
25 1 0.01
26 6 0.03
27 152 0.80
28 31 0.16
ACGTcount: A:0.18, C:0.18, G:0.19, T:0.44
Consensus pattern (27 bp):
GTCATTTTACCCTTCGAGGGTATTTTG
Found at i:15865980 original size:72 final size:73
Alignment explanation
Indices: 15865863--15866031 Score: 295
Period size: 72 Copynumber: 2.3 Consensus size: 73
15865853 TCTCTGTCTT
* * *
15865863 GGGTCACATGGCCAAGCCACAAGCCCGTGTGCTAGGCCGTGTAAGCATACTGACTTGCAATAAAT
1 GGGTCACATGGCCAAGCCACACGCCCATGTGCTAGGCCGTGTAAGCATACTGACTCGCAATAAAT
15865928 AAGTGCA-
66 AAGTGCAG
*
15865935 GGGTCACATGGCCAAACCACACGCCCATGTGCTAGGCCGTGTAAGCATACTGACTCGCAATAAAT
1 GGGTCACATGGCCAAGCCACACGCCCATGTGCTAGGCCGTGTAAGCATACTGACTCGCAATAAAT
15866000 AAGTGCAG
66 AAGTGCAG
15866008 GGGTCACATGGCCAAGCCACACGC
1 GGGTCACATGGCCAAGCCACACGC
15866032 TCGTGTTCTA
Statistics
Matches: 91, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
72 68 0.75
73 23 0.25
ACGTcount: A:0.29, C:0.28, G:0.26, T:0.17
Consensus pattern (73 bp):
GGGTCACATGGCCAAGCCACACGCCCATGTGCTAGGCCGTGTAAGCATACTGACTCGCAATAAAT
AAGTGCAG
Found at i:15867190 original size:24 final size:24
Alignment explanation
Indices: 15867140--15867220 Score: 76
Period size: 24 Copynumber: 3.3 Consensus size: 24
15867130 TGTATAACGG
**
15867140 GAAGCTCATAAGAGCC-ATAATTAA
1 GAAGCTCAT-AGAGCCAATAATCGA
15867164 GAAGCTCATACGAGCCAAT-ATCGA
1 GAAGCTCATA-GAGCCAATAATCGA
* * *
15867188 GAAACTCCAGAGAGCCATTAATCGA
1 GAAGCT-CATAGAGCCAATAATCGA
15867213 GAAGCTCA
1 GAAGCTCA
15867221 GTAAAAGCCT
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
23 1 0.02
24 31 0.66
25 15 0.32
ACGTcount: A:0.41, C:0.22, G:0.20, T:0.17
Consensus pattern (24 bp):
GAAGCTCATAGAGCCAATAATCGA
Found at i:15867399 original size:24 final size:25
Alignment explanation
Indices: 15867345--15867391 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
15867335 TATTAATGGG
*
15867345 AAGCTCATGAGAGCCATATATCAGA
1 AAGCTCAAGAGAGCCATATATCAGA
15867370 AAGCTCAAGAGAGCCA-ATATCA
1 AAGCTCAAGAGAGCCATATATCA
15867392 AGATGCTCGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.43, C:0.21, G:0.19, T:0.17
Consensus pattern (25 bp):
AAGCTCAAGAGAGCCATATATCAGA
Found at i:15871780 original size:214 final size:214
Alignment explanation
Indices: 15871411--15871832 Score: 790
Period size: 214 Copynumber: 2.0 Consensus size: 214
15871401 ACCAAATTAA
* *
15871411 GTCATGCTTGATTCAATACTTTCTACCACATTATAGCATGATTTTACCATGATTTATTCTACATC
1 GTCATGCTTGATTCAATACTTTCTACCACATTATAACATGATTTTACCATGATTTATTCTACACC
15871476 AAATATGCATGAATCCAAACTCTTAAAATCTAAGTTTTCTAAAGTATCAATAATGATAAAATTAA
66 AAATATGCATGAATCCAAACTCTTAAAATCTAAGTTTTCTAAAGTATCAATAATGATAAAATTAA
15871541 CCAAAACTTCATCAATTTCATTTTCTAAGGTATGGCTACCTTAAGTTATTATGAACAGTTAAAAG
131 CCAAAACTTCATCAATTTCATTTTCTAAGGTATGGCTACCTTAAGTTATTATGAACAGTTAAAAG
15871606 TACACTAAGAATTGATGAG
196 TACACTAAGAATTGATGAG
*
15871625 GTCATGCTTGATTCAATACTTTCTACCACATTATAACATGATTTTAGCATGATTTATTCTACACC
1 GTCATGCTTGATTCAATACTTTCTACCACATTATAACATGATTTTACCATGATTTATTCTACACC
*
15871690 AAATATGCATGAATCCAAACTCTTAAAATCTAAGTTTTCTAATGTATCAATAATGATAAAATTAA
66 AAATATGCATGAATCCAAACTCTTAAAATCTAAGTTTTCTAAAGTATCAATAATGATAAAATTAA
* *
15871755 CCAAAACTTCATCAATTTCATTTTCTAAGGTATGGCTACCTTAAGTTGTTATGAATAGTTAAAAG
131 CCAAAACTTCATCAATTTCATTTTCTAAGGTATGGCTACCTTAAGTTATTATGAACAGTTAAAAG
15871820 TACACTAAGAATT
196 TACACTAAGAATT
15871833 TGAAAGAAAA
Statistics
Matches: 202, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
214 202 1.00
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.36
Consensus pattern (214 bp):
GTCATGCTTGATTCAATACTTTCTACCACATTATAACATGATTTTACCATGATTTATTCTACACC
AAATATGCATGAATCCAAACTCTTAAAATCTAAGTTTTCTAAAGTATCAATAATGATAAAATTAA
CCAAAACTTCATCAATTTCATTTTCTAAGGTATGGCTACCTTAAGTTATTATGAACAGTTAAAAG
TACACTAAGAATTGATGAG
Found at i:15880512 original size:17 final size:17
Alignment explanation
Indices: 15880477--15880512 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
15880467 TTCTGTTTGA
*
15880477 TTTGAGTTCCTTTATCT
1 TTTGAGTTCCTTTAGCT
*
15880494 TTTGAGTTCCTTTCGCT
1 TTTGAGTTCCTTTAGCT
15880511 TT
1 TT
15880513 ATTTCAGTGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.08, C:0.19, G:0.14, T:0.58
Consensus pattern (17 bp):
TTTGAGTTCCTTTAGCT
Found at i:15882956 original size:14 final size:14
Alignment explanation
Indices: 15882937--15882965 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
15882927 TATATTATCT
15882937 ATCTTTCTATATGC
1 ATCTTTCTATATGC
15882951 ATCTTTCTATATGC
1 ATCTTTCTATATGC
15882965 A
1 A
15882966 CCATATATGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.24, C:0.21, G:0.07, T:0.48
Consensus pattern (14 bp):
ATCTTTCTATATGC
Found at i:15884976 original size:14 final size:14
Alignment explanation
Indices: 15884957--15884984 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
15884947 CTACAACATG
15884957 TTAGGTATGAATAA
1 TTAGGTATGAATAA
15884971 TTAGGTATGAATAA
1 TTAGGTATGAATAA
15884985 GATATGCATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.21, T:0.36
Consensus pattern (14 bp):
TTAGGTATGAATAA
Found at i:15889100 original size:2 final size:2
Alignment explanation
Indices: 15889093--15889119 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
15889083 ATCTCATCTC
15889093 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
15889120 CTTACACAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15899963 original size:26 final size:26
Alignment explanation
Indices: 15899934--15899990 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
15899924 TGCCAAAGGC
*
15899934 AAAATCGTCAAAATTTTAGC-AGGGGT
1 AAAATCATCAAAATTTT-GCTAGGGGT
*
15899960 AAAATCATTAAAATTTTGCTAGGGGT
1 AAAATCATCAAAATTTTGCTAGGGGT
15899986 AAAAT
1 AAAAT
15899991 AGGGATGAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 2 0.07
26 26 0.93
ACGTcount: A:0.42, C:0.09, G:0.19, T:0.30
Consensus pattern (26 bp):
AAAATCATCAAAATTTTGCTAGGGGT
Found at i:15908371 original size:23 final size:22
Alignment explanation
Indices: 15908340--15908383 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
15908330 ATTTCAATCT
**
15908340 TTATTTTTTTTCTTTATTTTTA
1 TTATTTTTTTTAATTATTTTTA
15908362 TTATTGTTTTTTAATTATTTTT
1 TTATT-TTTTTTAATTATTTTT
15908384 TAAACGAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.80
Consensus pattern (22 bp):
TTATTTTTTTTAATTATTTTTA
Found at i:15913795 original size:25 final size:25
Alignment explanation
Indices: 15913767--15913814 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
15913757 GTATATTTCA
* *
15913767 AAAAAGAAGAAGAATAAAAGAAAGG
1 AAAAAGAAAAAGAAGAAAAGAAAGG
15913792 AAAAAGAAAAAGAAGAAAAGAAA
1 AAAAAGAAAAAGAAGAAAAGAAA
15913815 AACGGAGAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (25 bp):
AAAAAGAAAAAGAAGAAAAGAAAGG
Found at i:15913816 original size:14 final size:13
Alignment explanation
Indices: 15913766--15913816 Score: 52
Period size: 14 Copynumber: 3.9 Consensus size: 13
15913756 AGTATATTTC
*
15913766 AAAAAAGAAGAAG
1 AAAAAAGAAAAAG
15913779 AATAAAAG--AAAG
1 AA-AAAAGAAAAAG
*
15913791 GAAAAAGAAAAAG
1 AAAAAAGAAAAAG
15913804 AAGAAAAGAAAAA
1 AA-AAAAGAAAAA
15913817 CGGAGAAGCC
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
11 5 0.16
12 4 0.13
13 7 0.23
14 15 0.48
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (13 bp):
AAAAAAGAAAAAG
Found at i:15914270 original size:108 final size:108
Alignment explanation
Indices: 15914081--15914302 Score: 304
Period size: 108 Copynumber: 2.1 Consensus size: 108
15914071 GGAGCACCTG
* *
15914081 TTTTCATCTTATTCATTTTGAATCATAGCAAAATTGGCTATCTTGATTAATTTATTCATTTCGAG
1 TTTTCATCTTATTCAGTTCGAATCATAGCAAAATTGGCTATCTTGATTAATTTATTCATTTCGAG
* *
15914146 TTTGGCTCTCAATAAAATTCCATCTTGTCTATTGTGATAATCT
66 TTTGGCTCTCAATAAAATTCCATCTTGTCCATTGTGATAATAT
* ** *
15914189 TTTTCATCTTATTCAGTTCGTATC-TGAGCAAAATTTTCTATCTTGATTAATTTATTCATTTTGA
1 TTTTCATCTTATTCAGTTCGAATCAT-AGCAAAATTGGCTATCTTGATTAATTTATTCATTTCGA
** * *
15914253 GCTTT-TTTCTCATTAAAATTTCATCTTGTCCATTGTGATAATAT
65 G-TTTGGCTCTCAATAAAATTCCATCTTGTCCATTGTGATAATAT
15914297 TTTTCA
1 TTTTCA
15914303 AACATTTTTC
Statistics
Matches: 100, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
107 1 0.01
108 96 0.96
109 3 0.03
ACGTcount: A:0.26, C:0.15, G:0.10, T:0.49
Consensus pattern (108 bp):
TTTTCATCTTATTCAGTTCGAATCATAGCAAAATTGGCTATCTTGATTAATTTATTCATTTCGAG
TTTGGCTCTCAATAAAATTCCATCTTGTCCATTGTGATAATAT
Found at i:15915163 original size:50 final size:50
Alignment explanation
Indices: 15915098--15915472 Score: 401
Period size: 50 Copynumber: 7.5 Consensus size: 50
15915088 GTAGTGGAAC
* *
15915098 AGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGATATTGCAGTTAAAA
1 AGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTGCAGTTAAAT
* * ** * ** * **
15915148 AGATTAAAGCTACAACAGCGAATCTTACTTCCTTGGCGGTGTAGTGGAAT
1 AGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTGCAGTTAAAT
*
15915198 AGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTACAGTTAAAT
1 AGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTGCAGTTAAAT
* * * ** * ** *
15915248 AGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGTAGTGGAAC
1 AGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTGCAGTTAAAT
*
15915298 AGATTGAAGCTACTACAGCGAATCTTGCTTCCCCGACATTGCAGTTAAAT
1 AGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTGCAGTTAAAT
* * * ** * ** *
15915348 AGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGTAGTGGAAC
1 AGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTGCAGTTAAAT
* * * * *
15915398 ATATTGAAGCTACAACAACAAATCCTGCTTCCCC-AAATTGCAGTTAAAT
1 AGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTGCAGTTAAAT
*
15915447 AGATTGAAGCTACAACAGTGAATCTT
1 AGATTGAAGCTACAACAGCGAATCTT
15915473 ATTTCCTTGG
Statistics
Matches: 253, Mismatches: 72, Indels: 1
0.78 0.22 0.00
Matches are distributed among these distances:
49 28 0.11
50 225 0.89
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (50 bp):
AGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTGCAGTTAAAT
Found at i:15915259 original size:100 final size:100
Alignment explanation
Indices: 15915077--15915508 Score: 679
Period size: 100 Copynumber: 4.3 Consensus size: 100
15915067 GTTACCCATA
* *
15915077 TCCCTGGCAGTGTAGTGGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGATATTGCAG
1 TCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTGCAG
* *
15915142 TTAAAAAGATTAAAGCTACAACAGCGAATCTTACT
66 TTAAATAGATTGAAGCTACAACAGCGAATCTTACT
* * *
15915177 TCCTTGGCGGTGTAGTGGAATAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTACAG
1 TCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTGCAG
15915242 TTAAATAGATTGAAGCTACAACAGCGAATCTTACT
66 TTAAATAGATTGAAGCTACAACAGCGAATCTTACT
*
15915277 TCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACTACAGCGAATCTTGCTTCCCCGACATTGCAG
1 TCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTGCAG
15915342 TTAAATAGATTGAAGCTACAACAGCGAATCTTACT
66 TTAAATAGATTGAAGCTACAACAGCGAATCTTACT
* * * * *
15915377 TCCCTGGCGGTGTAGTGGAACATATTGAAGCTACAACAACAAATCCTGCTTCCCC-AAATTGCAG
1 TCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTGCAG
* *
15915441 TTAAATAGATTGAAGCTACAACAGTGAATCTTATT
66 TTAAATAGATTGAAGCTACAACAGCGAATCTTACT
* * *
15915476 TCCTTGGC-GTGGCAGTGGAACAGATTAAAGCTA
1 TCCCTGGCGGT-GTAGTGGAACAGATTGAAGCTA
15915509 AAGGTAGCGA
Statistics
Matches: 308, Mismatches: 23, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
98 2 0.01
99 67 0.22
100 239 0.78
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (100 bp):
TCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTGCAG
TTAAATAGATTGAAGCTACAACAGCGAATCTTACT
Found at i:15915507 original size:50 final size:50
Alignment explanation
Indices: 15915077--15915559 Score: 339
Period size: 50 Copynumber: 9.7 Consensus size: 50
15915067 GTTACCCATA
* * *
15915077 TCCCTGGCAGT-GTAGTGGAACAGATTGAAGCTACAACAGCGAATCTTGCT
1 TCCCTGGC-GTGGCAGTGGAATAGATTGAAGCTACAACAGCGAATCTTACT
* *** * ** * *
15915127 TCCCCGATATTGCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTACT
1 TCCCTGGCGTGGCAGTGGAATAGATTGAAGCTACAACAGCGAATCTTACT
* * *
15915177 TCCTTGGCG-GTGTAGTGGAATAGATTGAAGCTACAACAGCGAATCTTGCT
1 TCCCTGGCGTG-GCAGTGGAATAGATTGAAGCTACAACAGCGAATCTTACT
* * * ** **
15915227 TCCCCGACATTACAGTTAAATAGATTGAAGCTACAACAGCGAATCTTACT
1 TCCCTGGCGTGGCAGTGGAATAGATTGAAGCTACAACAGCGAATCTTACT
* * * *
15915277 TCCCTGGCG-GTGTAGTGGAACAGATTGAAGCTACTACAGCGAATCTTGCT
1 TCCCTGGCGTG-GCAGTGGAATAGATTGAAGCTACAACAGCGAATCTTACT
* * * * **
15915327 TCCCCGACATTGCAGTTAAATAGATTGAAGCTACAACAGCGAATCTTACT
1 TCCCTGGCGTGGCAGTGGAATAGATTGAAGCTACAACAGCGAATCTTACT
* * * * * * *
15915377 TCCCTGGCG-GTGTAGTGGAACATATTGAAGCTACAACAACAAATCCTGCT
1 TCCCTGGCGTG-GCAGTGGAATAGATTGAAGCTACAACAGCGAATCTTACT
**** * ** * *
15915427 TCCC-CAAATTGCAGTTAAATAGATTGAAGCTACAACAGTGAATCTTATT
1 TCCCTGGCGTGGCAGTGGAATAGATTGAAGCTACAACAGCGAATCTTACT
* * * * ***
15915476 TCCTTGGCGTGGCAGTGGAACAGATTAAAGCTA-AAGGTAGCGAATCTCGTT
1 TCCCTGGCGTGGCAGTGGAATAGATTGAAGCTACAA--CAGCGAATCTTACT
* * * *
15915527 TCCCTGGTGTTGCAGTGGAATAGCTTAAAGCTA
1 TCCCTGGCGTGGCAGTGGAATAGATTGAAGCTA
15915560 AAGCGGAGTA
Statistics
Matches: 322, Mismatches: 101, Indels: 19
0.73 0.23 0.04
Matches are distributed among these distances:
49 34 0.11
50 250 0.78
51 38 0.12
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.27
Consensus pattern (50 bp):
TCCCTGGCGTGGCAGTGGAATAGATTGAAGCTACAACAGCGAATCTTACT
Found at i:15915544 original size:150 final size:149
Alignment explanation
Indices: 15915077--15915546 Score: 451
Period size: 150 Copynumber: 3.1 Consensus size: 149
15915067 GTTACCCATA
* *
15915077 TCCCTGGCAG-TGTAGTGGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGATATTGCA
1 TCCCTGGC-GTTGCAGTGGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCC-AAATTGCA
* *
15915141 GTTAAAAAGATTAAAGCTACAACAGCGAATCTTACTTCCTTGGCG-GTGTAGTGGAATAGATTGA
64 GTTAAAAAGATTGAAGCTACAACAGCGAATCTTACTTCCTTGGCGTG-GCAGTGGAATAGATTGA
15915205 AGCTACAACAGCGAATCTTGCT
128 AGCTACAACAGCGAATCTTGCT
* * * * ** * * ***** *
15915227 TCCCCGACATTACAGTTAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGTAG
1 TCCCTGGCGTTGCAGTGGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCC-CAAATTGCAG
** * * * ** * * * **
15915292 TGGAACAGATTGAAGCTACTACAGCGAATCTTGCTTCCCCGACATTGCAGTTAAATAGATTGAAG
65 TTAAAAAGATTGAAGCTACAACAGCGAATCTTACTTCCTTGGCGTGGCAGTGGAATAGATTGAAG
*
15915357 CTACAACAGCGAATCTTACT
130 CTACAACAGCGAATCTTGCT
* * * * * *
15915377 TCCCTGGCGGTGTAGTGGAACATATTGAAGCTACAACAACAAATCCTGCTTCCCCAAATTGCAGT
1 TCCCTGGCGTTGCAGTGGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCAAATTGCAGT
* * * * *
15915442 TAAATAGATTGAAGCTACAACAGTGAATCTTATTTCCTTGGCGTGGCAGTGGAACAGATTAAAGC
66 TAAAAAGATTGAAGCTACAACAGCGAATCTTACTTCCTTGGCGTGGCAGTGGAATAGATTGAAGC
* * *
15915507 TA-AAGGTAGCGAATCTCGTT
131 TACAA--CAGCGAATCTTGCT
*
15915527 TCCCTGGTGTTGCAGTGGAA
1 TCCCTGGCGTTGCAGTGGAA
15915547 TAGCTTAAAG
Statistics
Matches: 242, Mismatches: 73, Indels: 10
0.74 0.22 0.03
Matches are distributed among these distances:
148 2 0.01
149 56 0.23
150 184 0.76
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.26
Consensus pattern (149 bp):
TCCCTGGCGTTGCAGTGGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCAAATTGCAGT
TAAAAAGATTGAAGCTACAACAGCGAATCTTACTTCCTTGGCGTGGCAGTGGAATAGATTGAAGC
TACAACAGCGAATCTTGCT
Found at i:15915833 original size:44 final size:44
Alignment explanation
Indices: 15915783--15915928 Score: 139
Period size: 44 Copynumber: 3.3 Consensus size: 44
15915773 AGGTAGTAGG
* *
15915783 GAAGCAGATTTAAGCCACCAGTCTTATCTCCCTGAAGTTGCAAT
1 GAAGCAGATTAAAGCCACAAGTCTTATCTCCCTGAAGTTGCAAT
* * * * * *
15915827 GGAGCAGACTAAAGCCACAAATCTTATCTCTCTGAAGTTACAGT
1 GAAGCAGATTAAAGCCACAAGTCTTATCTCCCTGAAGTTGCAAT
* * * *** * *
15915871 GCAGCAGGTTGAAGATGCAAGTCTTATCTCCCTAAAGTTGCAAA
1 GAAGCAGATTAAAGCCACAAGTCTTATCTCCCTGAAGTTGCAAT
*
15915915 GAAGCAGACTAAAG
1 GAAGCAGATTAAAG
15915929 ATAGCGAATC
Statistics
Matches: 77, Mismatches: 25, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
44 77 1.00
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.24
Consensus pattern (44 bp):
GAAGCAGATTAAAGCCACAAGTCTTATCTCCCTGAAGTTGCAAT
Found at i:15915930 original size:44 final size:44
Alignment explanation
Indices: 15915802--15915955 Score: 139
Period size: 44 Copynumber: 3.5 Consensus size: 44
15915792 TTAAGCCACC
* **
15915802 AGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTAAAGCCACA
1 AGTCTTATCTCCCTGAAGTTGCAATGAAGCAGACTAAAGATACA
* * * * * ** * *
15915846 AATCTTATCTCTCTGAAGTTACAGTGCAGCAGGTTGAAGATGCA
1 AGTCTTATCTCCCTGAAGTTGCAATGAAGCAGACTAAAGATACA
* *
15915890 AGTCTTATCTCCCTAAAGTTGCAAAGAAGCAGACTAAAGATAGCGA
1 AGTCTTATCTCCCTGAAGTTGCAATGAAGCAGACTAAAGATA-C-A
* *
15915936 A-TCTTATTTCTCTGAAGTTG
1 AGTCTTATCTCCCTGAAGTTG
15915956 TAGTGGAATA
Statistics
Matches: 83, Mismatches: 25, Indels: 3
0.75 0.23 0.03
Matches are distributed among these distances:
44 64 0.77
45 17 0.20
46 2 0.02
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (44 bp):
AGTCTTATCTCCCTGAAGTTGCAATGAAGCAGACTAAAGATACA
Found at i:15916106 original size:44 final size:44
Alignment explanation
Indices: 15916025--15916144 Score: 145
Period size: 44 Copynumber: 2.8 Consensus size: 44
15916015 CAGATCATAT
* * * * * *
15916025 CAAACCTTATC-CCCTAAAATTACAGTGGGGCAGGTTGAA-ATTG
1 CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTGAAGA-TA
15916068 CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTGAAGATA
1 CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTGAAGATA
* *
15916112 CCAATCTTATCTCCCTGAAGTTGCAGTGGAGCA
1 CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCA
15916145 GATTAAAGCT
Statistics
Matches: 67, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
43 11 0.16
44 55 0.82
45 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.26
Consensus pattern (44 bp):
CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTGAAGATA
Found at i:15916167 original size:44 final size:44
Alignment explanation
Indices: 15916075--15916178 Score: 138
Period size: 44 Copynumber: 2.4 Consensus size: 44
15916065 TTGCAAACCT
* *
15916075 TATCTCCCTGAAGTTGCAGTGGAGCAAGTTGAAGATACCAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAAGTTAAAGATACCAATCC
* **
15916119 TATCTCCCTGAAGTTGCAGTGGAGC-AGATTAAAGCTATTAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAAG-TTAAAGATACCAATCC
*
15916163 TATCTCCTTGAAGTTG
1 TATCTCCCTGAAGTTG
15916179 TAGTAGAGTG
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
43 2 0.04
44 51 0.96
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (44 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAAGTTAAAGATACCAATCC
Found at i:15917007 original size:20 final size:20
Alignment explanation
Indices: 15916970--15917007 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
15916960 GTAGAAGCAG
15916970 ACAAACAAAGAAAAAAAACA
1 ACAAACAAAGAAAAAAAACA
15916990 ACAAA-AAAGAAAACAAAA
1 ACAAACAAAGAAAA-AAAA
15917008 ACGAATCTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.82, C:0.13, G:0.05, T:0.00
Consensus pattern (20 bp):
ACAAACAAAGAAAAAAAACA
Found at i:15923981 original size:94 final size:93
Alignment explanation
Indices: 15923810--15923991 Score: 265
Period size: 94 Copynumber: 1.9 Consensus size: 93
15923800 ACTATGGAAA
* * * * *
15923810 TATTTTCTAGTCAATGTGGGATTAAAATTAGCTTTTTAATGAAAATAGAGAAGAAATTGTCACTT
1 TATTCTCTAATCAATGTGGGATTAAAATTAGCATTTTAATAAAAATAGAGAAGAAATTGACACTT
15923875 ATTTATAAGGTAAATGTGAGATATGAGAG
66 ATTTATAAGGTAAATGTGA-ATATGAGAG
* * *
15923904 TATTCTCTAATCAATGTGGGATTAAAATTATCATTTTAATAAAAATAGTGAAGAAGTTGACACTT
1 TATTCTCTAATCAATGTGGGATTAAAATTAGCATTTTAATAAAAATAGAGAAGAAATTGACACTT
* *
15923969 ATTTATAGGGTAAGTGTGAATAT
66 ATTTATAAGGTAAATGTGAATAT
15923992 AAATGTGAAA
Statistics
Matches: 78, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
93 4 0.05
94 74 0.95
ACGTcount: A:0.38, C:0.06, G:0.19, T:0.37
Consensus pattern (93 bp):
TATTCTCTAATCAATGTGGGATTAAAATTAGCATTTTAATAAAAATAGAGAAGAAATTGACACTT
ATTTATAAGGTAAATGTGAATATGAGAG
Found at i:15925561 original size:14 final size:13
Alignment explanation
Indices: 15925528--15925552 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15925518 ATTTATTTCA
15925528 ATTAAAATAATAC
1 ATTAAAATAATAC
15925541 ATTAAAATAATA
1 ATTAAAATAATA
15925553 ATTTTAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (13 bp):
ATTAAAATAATAC
Found at i:15930320 original size:3 final size:3
Alignment explanation
Indices: 15930312--15930363 Score: 95
Period size: 3 Copynumber: 17.3 Consensus size: 3
15930302 AAAGTGATAT
*
15930312 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA GAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
15930360 TAA T
1 TAA T
15930364 GATGATGATG
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:15930368 original size:3 final size:3
Alignment explanation
Indices: 15930362--15930393 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
15930352 AATAATAATA
15930362 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
15930394 AATCCAAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:15930984 original size:23 final size:23
Alignment explanation
Indices: 15930944--15931000 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
15930934 AAAAAAAACT
* * *
15930944 TCTCTCTTTCTCTATTTTTTTAC
1 TCTCTTTTTTTCTATTTTTATAC
*
15930967 TCTCTTTTTTTCTTTTTTTATAC
1 TCTCTTTTTTTCTATTTTTATAC
* *
15930990 TATATTTTTTT
1 TCTCTTTTTTT
15931001 TATATATATT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.11, C:0.18, G:0.00, T:0.72
Consensus pattern (23 bp):
TCTCTTTTTTTCTATTTTTATAC
Found at i:15931000 original size:16 final size:15
Alignment explanation
Indices: 15930979--15931011 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
15930969 TCTTTTTTTC
15930979 TTTTTTTATACTATAT
1 TTTTTTTATA-TATAT
15930995 TTTTTTTATATATAT
1 TTTTTTTATATATAT
15931010 TT
1 TT
15931012 ATATATAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.73
Consensus pattern (15 bp):
TTTTTTTATATATAT
Found at i:15937978 original size:26 final size:27
Alignment explanation
Indices: 15937943--15938017 Score: 75
Period size: 26 Copynumber: 2.8 Consensus size: 27
15937933 GAAAATATAT
15937943 TATAACAACT-AAAGAAAAAAA-ATTACC
1 TATAACAACTGAAA-AAAAAAAGA-TACC
15937970 TATAA-AACTGAAAAAAAAAAGATACC
1 TATAACAACTGAAAAAAAAAAGATACC
* * *
15937996 TAGAACAAATTAAAAAAGAAAA
1 TATAACAACTGAAAAAA-AAAA
15938018 AAGAGAAGTG
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
26 19 0.46
27 18 0.44
28 4 0.10
ACGTcount: A:0.67, C:0.11, G:0.07, T:0.16
Consensus pattern (27 bp):
TATAACAACTGAAAAAAAAAAGATACC
Found at i:15938196 original size:13 final size:13
Alignment explanation
Indices: 15938178--15938204 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
15938168 AATAAAAAAA
15938178 ATTCCCAAATTTT
1 ATTCCCAAATTTT
15938191 ATTCCCAAATTTT
1 ATTCCCAAATTTT
15938204 A
1 A
15938205 GGGTTTAGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.22, G:0.00, T:0.44
Consensus pattern (13 bp):
ATTCCCAAATTTT
Found at i:15941586 original size:123 final size:124
Alignment explanation
Indices: 15941362--15941710 Score: 592
Period size: 123 Copynumber: 2.8 Consensus size: 124
15941352 TTATTTCGAG
* *
15941362 TTGACGTTTCTGGTCAAATTGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTG
1 TTGACGTTTCTGATCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTG
*
15941427 AAATCGCGCCCTCGTGGACGCGATTTTGCTATAGTAGGTCATGTAAGAAATAA-TTTTT
66 AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTT
** * *
15941485 TTGACGTTTCTGATCAAATAGTATAAAATTACTTCTACGAGGATGCTATTTGAGTAGAAATTGTG
1 TTGACGTTTCTGATCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTG
*
15941550 AAATCGCGCCCTCATGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTT
66 AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTT
* * *
15941609 TTGACTTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAAAAGAAATTGTG
1 TTGACGTTTCTGATCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTG
15941674 AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAG
66 AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAG
15941711 CAAGTTTGGG
Statistics
Matches: 209, Mismatches: 16, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
123 110 0.53
124 99 0.47
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (124 bp):
TTGACGTTTCTGATCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTG
AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTT
Found at i:15945736 original size:27 final size:27
Alignment explanation
Indices: 15945706--15945884 Score: 182
Period size: 27 Copynumber: 6.6 Consensus size: 27
15945696 ATATTGAGCC
* * * *
15945706 CGCACACTCAGTGCTATATAATCATCT
1 CGCACACTTAGTGCTACATAGTCATAT
* * *
15945733 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCATAT
*
15945760 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCATA-T
** *
15945788 CGCACACTTAGTGCCGCATGGTCA-ATT
1 CGCACACTTAGTGCTACATAGTCATA-T
* * *
15945815 CGCACGCTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCATAT
*
15945842 CGCACACTTAGTGCAACATAGTCATAT
1 CGCACACTTAGTGCTACATAGTCATAT
15945869 CGCACACTTAGTGCTA
1 CGCACACTTAGTGCTA
15945885 TACAATTTAA
Statistics
Matches: 128, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCATAT
Found at i:15946450 original size:13 final size:13
Alignment explanation
Indices: 15946432--15946456 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15946422 TACTAAATTT
15946432 TCATGGATTCAAG
1 TCATGGATTCAAG
15946445 TCATGGATTCAA
1 TCATGGATTCAA
15946457 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:15964549 original size:20 final size:20
Alignment explanation
Indices: 15964524--15964563 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
15964514 TAAAGGTCTT
15964524 TAATGCATATGATGCGATGC
1 TAATGCATATGATGCGATGC
15964544 TAATGCATATGATGCGATGC
1 TAATGCATATGATGCGATGC
15964564 ATGAGGTGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (20 bp):
TAATGCATATGATGCGATGC
Found at i:15965622 original size:43 final size:43
Alignment explanation
Indices: 15965495--15965624 Score: 197
Period size: 43 Copynumber: 3.0 Consensus size: 43
15965485 TACCAAATGG
*
15965495 CATTGACTATAAGGGTGGTGCTATGTGCTGATCCACTGGGTAT
1 CATTGACTATAAGGGTGGTGCTATGTGCTGATCCACTGTGTAT
* * * * *
15965538 CATTGATTATACGAGTGGTGTTATGTGCTGATCCATTGTGTAT
1 CATTGACTATAAGGGTGGTGCTATGTGCTGATCCACTGTGTAT
*
15965581 CATTGACTATAAGGGTGGTGCTATGTGCTGATCCACCGTGTAT
1 CATTGACTATAAGGGTGGTGCTATGTGCTGATCCACTGTGTAT
15965624 C
1 C
15965625 TGTTATTATT
Statistics
Matches: 75, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 75 1.00
ACGTcount: A:0.21, C:0.16, G:0.28, T:0.35
Consensus pattern (43 bp):
CATTGACTATAAGGGTGGTGCTATGTGCTGATCCACTGTGTAT
Found at i:15965669 original size:44 final size:44
Alignment explanation
Indices: 15965621--15965722 Score: 123
Period size: 44 Copynumber: 2.3 Consensus size: 44
15965611 ATCCACCGTG
*
15965621 TATCTGTTATTATTGGTGGCACAGACTATGTGTAGGCCACCGCC
1 TATCTGTTATTATTGGTGGCACAGACTATGTGCAGGCCACCGCC
* * * * ** **
15965665 TATCTATTATTATTGGTGGTACGGACTGTGTGCAGGCCAGTGTG
1 TATCTGTTATTATTGGTGGCACAGACTATGTGCAGGCCACCGCC
15965709 TATCTGTTATTATT
1 TATCTGTTATTATT
15965723 CCAATGAGTT
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 48 1.00
ACGTcount: A:0.20, C:0.17, G:0.25, T:0.38
Consensus pattern (44 bp):
TATCTGTTATTATTGGTGGCACAGACTATGTGCAGGCCACCGCC
Found at i:15970075 original size:43 final size:43
Alignment explanation
Indices: 15969948--15970077 Score: 188
Period size: 43 Copynumber: 3.0 Consensus size: 43
15969938 TACCAAATGG
*
15969948 CATTGACTATAAGGGTGGTGCTATGTGCTGATCCACTGGGTAT
1 CATTGACTATAAGGGTGGTGCTATGTGCTGATCCACTGTGTAT
* * * * *
15969991 CATTGATTATACGAGTGGTGTTATGTGCTGATCCATTGTGTAT
1 CATTGACTATAAGGGTGGTGCTATGTGCTGATCCACTGTGTAT
* *
15970034 CATTGACTATAAGGGTGGTGCTATGTGCCGATCCACCGTGTAT
1 CATTGACTATAAGGGTGGTGCTATGTGCTGATCCACTGTGTAT
15970077 C
1 C
15970078 TGTTATTATT
Statistics
Matches: 74, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 74 1.00
ACGTcount: A:0.21, C:0.17, G:0.28, T:0.35
Consensus pattern (43 bp):
CATTGACTATAAGGGTGGTGCTATGTGCTGATCCACTGTGTAT
Found at i:15970122 original size:44 final size:44
Alignment explanation
Indices: 15970074--15970175 Score: 123
Period size: 44 Copynumber: 2.3 Consensus size: 44
15970064 ATCCACCGTG
*
15970074 TATCTGTTATTATTGGTGGCACAGACTATGTGTAGGCCACCGCC
1 TATCTGTTATTATTGGTGGCACAGACTATGTGCAGGCCACCGCC
* * * * ** **
15970118 TATCTATTATTATTGGTGGTACGGACTGTGTGCAGGCCAGTGTG
1 TATCTGTTATTATTGGTGGCACAGACTATGTGCAGGCCACCGCC
15970162 TATCTGTTATTATT
1 TATCTGTTATTATT
15970176 CCGATGAGTT
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 48 1.00
ACGTcount: A:0.20, C:0.17, G:0.25, T:0.38
Consensus pattern (44 bp):
TATCTGTTATTATTGGTGGCACAGACTATGTGCAGGCCACCGCC
Found at i:15974756 original size:8 final size:8
Alignment explanation
Indices: 15974743--15974798 Score: 51
Period size: 8 Copynumber: 7.1 Consensus size: 8
15974733 TCTTTAGAAA
15974743 AAATATAT
1 AAATATAT
15974751 AAATATAT
1 AAATATAT
* *
15974759 ATACATAT
1 AAATATAT
*
15974767 ACATATAT
1 AAATATAT
*
15974775 AAA-AAAT
1 AAATATAT
*
15974782 AGATATAT
1 AAATATAT
*
15974790 ACATATAT
1 AAATATAT
15974798 A
1 A
15974799 TATAGATTAT
Statistics
Matches: 38, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
7 5 0.13
8 33 0.87
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (8 bp):
AAATATAT
Found at i:15974796 original size:35 final size:34
Alignment explanation
Indices: 15974740--15974828 Score: 101
Period size: 35 Copynumber: 2.6 Consensus size: 34
15974730 TATTCTTTAG
* *
15974740 AAAAAATATATAAATATATATACATATACATATAT
1 AAAAAATAGATAAATACATATACATATACAT-TAT
* * *
15974775 AAAAAATAGATATATACATATATATATAGATTAT
1 AAAAAATAGATAAATACATATACATATACATTAT
*
15974809 AAAAAA-A-ATAATTACATATA
1 AAAAAATAGATAAATACATATA
15974829 TAAATTATAA
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
32 11 0.23
33 1 0.02
34 9 0.19
35 26 0.55
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (34 bp):
AAAAAATAGATAAATACATATACATATACATTAT
Found at i:15975394 original size:50 final size:48
Alignment explanation
Indices: 15975324--15975506 Score: 188
Period size: 50 Copynumber: 3.7 Consensus size: 48
15975314 GTCGGGAAAC
* * * *
15975324 AAGATTCGCCGTCGTAGCTTCAATCTATTCCACTACATCCCTAGGGAAGT
1 AAGATTCGCCGTTGTGGCTTCAATCTATTCCATTGCATCCC-A-GGAAGT
* * * ** **
15975374 AAAATTCGTCGTTGTGGCTTCAATCTATT-AATTGCAATGTCAGGAAAC
1 AAGATTCGCCGTTGTGGCTTCAATCTATTCCATTGC-ATCCCAGGAAGT
* * *
15975422 AAGATTCACCGTAGTAGCTTCAATCTATTCCATTGCATCGCCATGGAAGT
1 AAGATTCGCCGTTGTGGCTTCAATCTATTCCATTGCATC-CCA-GGAAGT
15975472 AAGATTCGCCGTTGTGGCTTCAATCTATTCCATTG
1 AAGATTCGCCGTTGTGGCTTCAATCTATTCCATTG
15975507 TAATGCCAAA
Statistics
Matches: 105, Mismatches: 24, Indels: 8
0.77 0.18 0.06
Matches are distributed among these distances:
48 30 0.29
49 11 0.10
50 64 0.61
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.32
Consensus pattern (48 bp):
AAGATTCGCCGTTGTGGCTTCAATCTATTCCATTGCATCCCAGGAAGT
Found at i:15975424 original size:98 final size:98
Alignment explanation
Indices: 15975303--15975500 Score: 308
Period size: 98 Copynumber: 2.0 Consensus size: 98
15975293 TCAAATTTTT
* * *
15975303 TTAATTGCAATGTCGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTATTCCACTACATC-CCTA
1 TTAATTGCAATGTCAGGAAACAAGATTCACCGTAGTAGCTTCAATCTATTCCACTACATCGCC-A
*
15975367 GGGAAGTAAAATTCGTCGTTGTGGCTTCAATCTA
65 GGGAAGTAAAATTCGCCGTTGTGGCTTCAATCTA
* * *
15975401 TTAATTGCAATGTCAGGAAACAAGATTCACCGTAGTAGCTTCAATCTATTCCATTGCATCGCCAT
1 TTAATTGCAATGTCAGGAAACAAGATTCACCGTAGTAGCTTCAATCTATTCCACTACATCGCCAG
*
15975466 GGAAGTAAGATTCGCCGTTGTGGCTTCAATCTA
66 GGAAGTAAAATTCGCCGTTGTGGCTTCAATCTA
15975499 TT
1 TT
15975501 CCATTGTAAT
Statistics
Matches: 91, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
98 89 0.98
99 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (98 bp):
TTAATTGCAATGTCAGGAAACAAGATTCACCGTAGTAGCTTCAATCTATTCCACTACATCGCCAG
GGAAGTAAAATTCGCCGTTGTGGCTTCAATCTA
Found at i:15975528 original size:50 final size:48
Alignment explanation
Indices: 15975324--15975530 Score: 159
Period size: 50 Copynumber: 4.2 Consensus size: 48
15975314 GTCGGGAAAC
* * * * *
15975324 AAGATTCGCCGTCGTAGCTTCAATCTATTCCACT-ACATCCCTAGGGAAGT
1 AAGATTCGCCGTTGTGGCTTCAATCTATTCCATTGA-ATGCC-AAGGAA-T
* * * * *
15975374 AAAATTCGTCGTTGTGGCTTCAATCTATT-AATTGCAATGTC-AGGAAAC
1 AAGATTCGCCGTTGTGGCTTCAATCTATTCCATTG-AATGCCAAGG-AAT
* * * * *
15975422 AAGATTCACCGTAGTAGCTTCAATCTATTCCATTGCATCGCCATGGAAGT
1 AAGATTCGCCGTTGTGGCTTCAATCTATTCCATTGAAT-GCCAAGGAA-T
*
15975472 AAGATTCGCCGTTGTGGCTTCAATCTATTCCATTGTAATGCCAAAGAGAT
1 AAGATTCGCCGTTGTGGCTTCAATCTATTCCATTG-AATGCCAAGGA-AT
*
15975522 AGGATTCGC
1 AAGATTCGC
15975531 TGCCCACAGC
Statistics
Matches: 121, Mismatches: 27, Indels: 18
0.73 0.16 0.11
Matches are distributed among these distances:
48 28 0.23
49 12 0.10
50 77 0.64
51 4 0.03
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (48 bp):
AAGATTCGCCGTTGTGGCTTCAATCTATTCCATTGAATGCCAAGGAAT
Found at i:15975940 original size:45 final size:45
Alignment explanation
Indices: 15975802--15975940 Score: 140
Period size: 45 Copynumber: 3.1 Consensus size: 45
15975792 GATCCACTTT
* * *
15975802 ACTGCCAATACAGGAAGACAAGATCTTCTA-TTTTCAACCTACTCT
1 ACTGCTAATACAGGAAGACAAGATCTGCTACTTTT-AACCTACTCC
* * * * * * * *
15975847 ACTGCTACT-CAGGGAGACAAG-GCTGGTACCTTTGATCTACTTC
1 ACTGCTAATACAGGAAGACAAGATCTGCTACTTTTAACCTACTCC
*
15975890 GCTGCTAATACAGGAAGACAAGATCTGCTACTTTTAACCTACTCC
1 ACTGCTAATACAGGAAGACAAGATCTGCTACTTTTAACCTACTCC
15975935 ACTGCT
1 ACTGCT
15975941 GCTCAGGGAG
Statistics
Matches: 70, Mismatches: 21, Indels: 6
0.72 0.22 0.06
Matches are distributed among these distances:
43 17 0.24
44 25 0.36
45 28 0.40
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.28
Consensus pattern (45 bp):
ACTGCTAATACAGGAAGACAAGATCTGCTACTTTTAACCTACTCC
Found at i:15975957 original size:88 final size:88
Alignment explanation
Indices: 15975703--15975959 Score: 295
Period size: 88 Copynumber: 2.9 Consensus size: 88
15975693 CGGGTGTCTC
* * * * * *
15975703 CGATCTGCTTTGCTACTAGTACAGGAAGGCAAGATCTG-T-CATTTCCAACATACTCCACTGCTG
1 CGATCTACTTTGCTGCTAATACAGGAAGACAAGATCTGCTAC-TTT-TAACCTACTCCACTGCTG
* * * *
15975766 CTTAGGGAGATAAAGCTAGTATCTT
64 CTCAGGGAGATAAGGCTGGTACCTT
* * * * * *
15975791 CGATCCACTTTACTGCCAATACAGGAAGACAAGATCTTCTA-TTTTCAACCTACTCTACTGCTAC
1 CGATCTACTTTGCTGCTAATACAGGAAGACAAGATCTGCTACTTTT-AACCTACTCCACTGCTGC
*
15975855 TCAGGGAGACAAGGCTGGTACCTT
65 TCAGGGAGATAAGGCTGGTACCTT
* *
15975879 TGATCTACTTCGCTGCTAATACAGGAAGACAAGATCTGCTACTTTTAACCTACTCCACTGCTGCT
1 CGATCTACTTTGCTGCTAATACAGGAAGACAAGATCTGCTACTTTTAACCTACTCCACTGCTGCT
15975944 CAGGGAGATAAGGCTG
66 CAGGGAGATAAGGCTG
15975960 AGGTCTCACC
Statistics
Matches: 139, Mismatches: 26, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
88 134 0.96
89 5 0.04
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (88 bp):
CGATCTACTTTGCTGCTAATACAGGAAGACAAGATCTGCTACTTTTAACCTACTCCACTGCTGCT
CAGGGAGATAAGGCTGGTACCTT
Found at i:15977210 original size:7 final size:7
Alignment explanation
Indices: 15977191--15977245 Score: 69
Period size: 7 Copynumber: 7.9 Consensus size: 7
15977181 TTAGCCTCTC
15977191 CATTTTT
1 CATTTTT
*
15977198 -ACTTTTC
1 CA-TTTTT
15977205 CATTTTT
1 CATTTTT
15977212 CATTTTT
1 CATTTTT
15977219 CATTTTT
1 CATTTTT
15977226 CA-TTTT
1 CATTTTT
15977232 CATTTCTT
1 CATTT-TT
15977240 CATTTT
1 CATTTT
15977246 CTCACATCAC
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
6 7 0.17
7 27 0.64
8 8 0.19
ACGTcount: A:0.15, C:0.18, G:0.00, T:0.67
Consensus pattern (7 bp):
CATTTTT
Found at i:15981266 original size:27 final size:27
Alignment explanation
Indices: 15981235--15981412 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
15981225 TAAATTGTAC
*
15981235 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
15981262 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
15981288 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
15981316 GGCACTAAGTGTGCGAGATGGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * * *
15981344 GGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
15981371 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
15981398 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
15981413 GGCTCAATAA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:15981351 original size:82 final size:81
Alignment explanation
Indices: 15981236--15981391 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
15981226 AAATTGTACA
* * * *
15981236 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
15981300 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
15981317 GCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-ATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
15981382 TGCGAGTTGA
65 TGCGAATTGA
15981392 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 15 0.23
82 49 0.75
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:15981403 original size:82 final size:81
Alignment explanation
Indices: 15981232--15981412 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
15981222 GATTAAATTG
* * * *
15981232 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAA
15981297 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
15981313 TGCGGCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-ATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
15981377 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
15981395 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
15981413 GGCTCAATAA
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 18 0.22
82 64 0.78
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:15986579 original size:27 final size:27
Alignment explanation
Indices: 15986549--15986726 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
15986539 TTATTGAGCC
* * * *
15986549 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
15986576 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
15986603 CGCACACTTAGTGCCACATAGTCCATCT
1 CGCACACTTAGTGCTACATAGT-CAAAT
** * *
15986631 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
15986658 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
15986685 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
15986712 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
15986727 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:15986688 original size:82 final size:81
Alignment explanation
Indices: 15986570--15986725 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
15986560 TGCTATATAA
* * **
15986570 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCCACATAGTCCATCTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGT-CAAATCGCA
15986635 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
15986652 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
15986716 CACTTAGTGC
65 CACTTAGTGC
15986726 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:16006231 original size:45 final size:45
Alignment explanation
Indices: 16006168--16006315 Score: 183
Period size: 45 Copynumber: 3.3 Consensus size: 45
16006158 TTGGCATGAT
** * *
16006168 GTAGATCAAAGACGACAGATCTTGTCTCCCCATACTGGTGGTGGA
1 GTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGTGGTGAA
* ** *
16006213 GTAGATCGAAA-CTAACAGATCTTGTCTTCATATACTGG-CGTGAA
1 GTAGATC-AAAGATAACAGATCTTGTCTTCCCATACTGGTGGTGAA
* *
16006257 GTAGATCAAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAA
1 GTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGTGGTGAA
16006302 GTAGATCAAAGATA
1 GTAGATCAAAGATA
16006316 CAAGTCTTAT
Statistics
Matches: 86, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
43 3 0.03
44 34 0.40
45 46 0.53
46 3 0.03
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (45 bp):
GTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGTGGTGAA
Found at i:16006239 original size:89 final size:89
Alignment explanation
Indices: 16006141--16006308 Score: 248
Period size: 89 Copynumber: 1.9 Consensus size: 89
16006131 AAAAGGAACT
* * *
16006141 GATCTTGTCTTCATGTATTGGCATGATGTAGATCAAAGACGA-CAGATCTTGTCTCCCCATACTG
1 GATCTTGTCTTCATATACTGGCATGAAGTAGATCAAAGA-GAGCAGATCTTGTCTCCCCATACTG
* *
16006205 GTGGTGGAGTAGATCGAAACTAACA
65 GTGGCGAAGTAGATCGAAACTAACA
* * *
16006230 GATCTTGTCTTCATATACTGGCGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCATACTGG
1 GATCTTGTCTTCATATACTGGCATGAAGTAGATCAAAGAGAGCAGATCTTGTCTCCCCATACTGG
16006295 TGGCGAAGTAGATC
66 TGGCGAAGTAGATC
16006309 AAAGATACAA
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
88 1 0.01
89 69 0.99
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (89 bp):
GATCTTGTCTTCATATACTGGCATGAAGTAGATCAAAGAGAGCAGATCTTGTCTCCCCATACTGG
TGGCGAAGTAGATCGAAACTAACA
Found at i:16006276 original size:44 final size:45
Alignment explanation
Indices: 16006141--16006315 Score: 160
Period size: 44 Copynumber: 3.9 Consensus size: 45
16006131 AAAAGGAACT
** * * * *
16006141 GATCTTGTCTTCATGTATTGG-CATGATGTAGATCAAAGA-CGACA
1 GATCTTGTCTTCACATACTGGTCGTGAAGTAGATCAAAGATAG-CA
* * * * * *
16006185 GATCTTGTCTCCCCATACTGGTGGTGGAGTAGATCGAAA-CTAACA
1 GATCTTGTCTTCACATACTGGTCGTGAAGTAGATC-AAAGATAGCA
*
16006230 GATCTTGTCTTCATATACTGG-CGTGAAGTAGATCAAAGATAGCA
1 GATCTTGTCTTCACATACTGGTCGTGAAGTAGATCAAAGATAGCA
* * *
16006274 GATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGATA
1 GATCTTGTCTTCACATACTGGTCGTGAAGTAGATCAAAGATA
16006316 CAAGTCTTAT
Statistics
Matches: 103, Mismatches: 23, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
43 3 0.03
44 50 0.49
45 47 0.46
46 3 0.03
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.29
Consensus pattern (45 bp):
GATCTTGTCTTCACATACTGGTCGTGAAGTAGATCAAAGATAGCA
Found at i:16010351 original size:44 final size:44
Alignment explanation
Indices: 16010303--16010412 Score: 166
Period size: 44 Copynumber: 2.5 Consensus size: 44
16010293 AACTCATCGG
*
16010303 AATAATAACAGATACACGGTGGCCTGCACACAGTCCGTACCACC
1 AATAATAACAGATACACGGTGGCCTACACACAGTCCGTACCACC
* ** * *
16010347 AATAATAATAGATAGGCGGTGGCCTACACATAGTCCGTGCCACC
1 AATAATAACAGATACACGGTGGCCTACACACAGTCCGTACCACC
16010391 AATAATAACAGATACACGGTGG
1 AATAATAACAGATACACGGTGG
16010413 ATCAGCACAT
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 57 1.00
ACGTcount: A:0.35, C:0.25, G:0.21, T:0.18
Consensus pattern (44 bp):
AATAATAACAGATACACGGTGGCCTACACACAGTCCGTACCACC
Found at i:16010450 original size:43 final size:43
Alignment explanation
Indices: 16010401--16010530 Score: 179
Period size: 43 Copynumber: 3.0 Consensus size: 43
16010391 AATAATAACA
* *
16010401 GATACACGGTGGATCAGCACATAGCACCACCCTTATAGTTAAT
1 GATACACAGTGGATCAGCACATAGCACCACCCTTATAGTCAAT
* * * * * *
16010444 GATACACAATAGATCAGCACATAACACCACTCGTATAATCAAT
1 GATACACAGTGGATCAGCACATAGCACCACCCTTATAGTCAAT
*
16010487 GATACCCAGTGGATCAGCACATAGCACCACCCTTATAGTCAAT
1 GATACACAGTGGATCAGCACATAGCACCACCCTTATAGTCAAT
16010530 G
1 G
16010531 CCATTTGGTA
Statistics
Matches: 72, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 72 1.00
ACGTcount: A:0.36, C:0.27, G:0.15, T:0.22
Consensus pattern (43 bp):
GATACACAGTGGATCAGCACATAGCACCACCCTTATAGTCAAT
Found at i:16014812 original size:44 final size:44
Alignment explanation
Indices: 16014748--16014855 Score: 171
Period size: 44 Copynumber: 2.5 Consensus size: 44
16014738 AACTCATCGG
*
16014748 AATAATAACAGATACACGGTGGCCTGCACACAGTCCGTACCACC
1 AATAATAACAGATACACGGTGGCCTGAACACAGTCCGTACCACC
* * * *
16014792 GATAATAACAGATACGCGGTGGCCTGAACATAGTCCGTGCCACC
1 AATAATAACAGATACACGGTGGCCTGAACACAGTCCGTACCACC
16014836 AATAATAACAGATACACGGT
1 AATAATAACAGATACACGGT
16014856 AGATCAGCAC
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 57 1.00
ACGTcount: A:0.35, C:0.27, G:0.20, T:0.18
Consensus pattern (44 bp):
AATAATAACAGATACACGGTGGCCTGAACACAGTCCGTACCACC
Found at i:16014894 original size:43 final size:43
Alignment explanation
Indices: 16014846--16014975 Score: 181
Period size: 43 Copynumber: 3.0 Consensus size: 43
16014836 AATAATAACA
* * * *
16014846 GATACACGGTAGATCAGCACATAGCACCAGCTTTATAGTTAAT
1 GATACACGGTGGATCAGCACATAGCACCACCCTTATAGTCAAT
* * *
16014889 GATACACGGTGGATCAGCACATAACACCACCCGTATAATCAAT
1 GATACACGGTGGATCAGCACATAGCACCACCCTTATAGTCAAT
16014932 GATAC-CTGGTGGATCAGCACATAGCACCACCCTTATAGTCAAT
1 GATACAC-GGTGGATCAGCACATAGCACCACCCTTATAGTCAAT
16014975 G
1 G
16014976 TCATCTGGTA
Statistics
Matches: 76, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
42 1 0.01
43 75 0.99
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.22
Consensus pattern (43 bp):
GATACACGGTGGATCAGCACATAGCACCACCCTTATAGTCAAT
Found at i:16018815 original size:22 final size:20
Alignment explanation
Indices: 16018772--16018810 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
16018762 TAATTTAAAA
16018772 TATAAAAATTTATTAATATG
1 TATAAAAATTTATTAATATG
*
16018792 TATATAAATTTATTAATAT
1 TATAAAAATTTATTAATAT
16018811 ATGTAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (20 bp):
TATAAAAATTTATTAATATG
Found at i:16021760 original size:23 final size:22
Alignment explanation
Indices: 16021717--16021760 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
16021707 TTCTAAATCG
16021717 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
16021740 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
16021761 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:16021869 original size:45 final size:45
Alignment explanation
Indices: 16021805--16021893 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
16021795 AACAGATACT
* *
16021805 CGGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
*
16021850 CGGTGGAATCAGCACATAGCAACCACCTTACTAATTAATGATGT
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
16021894 TCCATTCACA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.26
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
Found at i:16021962 original size:51 final size:51
Alignment explanation
Indices: 16021904--16022090 Score: 207
Period size: 51 Copynumber: 3.7 Consensus size: 51
16021894 TCCATTCACA
* *
16021904 TAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCAGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATTACCATCCGGTACACG
* ** * ** * *
16021955 TAGTAGCCTGCACATAGTACTACACACGTGATCAAAACTATTTGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATTACCATCCGGTACACG
* * ** *
16022006 TAGTAGTCTGCACATAGTACTACACATGCAACC--TATCATTCCGGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATTACCA-TCCGGTACACG
*
16022056 TAGTAGCCTGCACAAAGTACTACACACGTGACCAT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
16022091 CACTTTCCTT
Statistics
Matches: 106, Mismatches: 27, Indels: 5
0.77 0.20 0.04
Matches are distributed among these distances:
49 2 0.02
50 35 0.33
51 69 0.65
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATTACCATCCGGTACACG
Found at i:16022078 original size:101 final size:101
Alignment explanation
Indices: 16021902--16022086 Score: 291
Period size: 101 Copynumber: 1.8 Consensus size: 101
16021892 GTTCCATTCA
**
16021902 CATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCAGTACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCAACCA-TACCATCCAGTACACGTAGTAGCCTGCA
*
16021967 CATAGTACTACACACGTGATCAAAACTATTTGGTACG
65 CAAAGTACTACACACGTGATCAAAACTATTTGGTACG
* * *
16022004 CATAGTAGTCTGCACATAGTACTACACATGCAACC-TATCATTCCGGTACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCAACCATACCA-TCCAGTACACGTAGTAGCCTGCA
16022068 CAAAGTACTACACACGTGA
65 CAAAGTACTACACACGTGA
16022087 CCATCACTTT
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
100 4 0.05
101 40 0.53
102 32 0.42
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAGTACTACACATGCAACCATACCATCCAGTACACGTAGTAGCCTGCAC
AAAGTACTACACACGTGATCAAAACTATTTGGTACG
Found at i:16023591 original size:35 final size:35
Alignment explanation
Indices: 16023552--16023647 Score: 129
Period size: 35 Copynumber: 2.7 Consensus size: 35
16023542 TGCCTTGCCT
*
16023552 GACCTATATATCATTTACATGGTGTCACCCTGAAG
1 GACCTATATATCATTTACATGGTGTCACCCTAAAG
* * * * *
16023587 GACCTATATACCATTTACACGGTGCCACCTTAAAT
1 GACCTATATATCATTTACATGGTGTCACCCTAAAG
*
16023622 GACCTATATATCGTTTACATGGTGTC
1 GACCTATATATCATTTACATGGTGTC
16023648 CCTTCGAAAG
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 51 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (35 bp):
GACCTATATATCATTTACATGGTGTCACCCTAAAG
Found at i:16027535 original size:21 final size:21
Alignment explanation
Indices: 16027479--16027535 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
16027469 AATTGGCAAT
* * *
16027479 AAAATTAAAAGAAAAAAAATA
1 AAAATTGAAACAAATAAAATA
*
16027500 AAAATTGAAACAAATAACATA
1 AAAATTGAAACAAATAAAATA
16027521 AAAATTGAAACAAAT
1 AAAATTGAAACAAAT
16027536 TTTCTATGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.72, C:0.05, G:0.05, T:0.18
Consensus pattern (21 bp):
AAAATTGAAACAAATAAAATA
Found at i:16030168 original size:40 final size:40
Alignment explanation
Indices: 16030123--16030331 Score: 211
Period size: 40 Copynumber: 5.4 Consensus size: 40
16030113 ATTGTACGAA
* *
16030123 TGCACATATGTGCCCCTATTTGTACTTCGATACCCCTGAT
1 TGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTGAT
16030163 TGCACATACGTGCCCCTATTTGTACTTCGGTACCCC----
1 TGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTGAT
*
16030199 TG---ATACGTGCCCCTATTTGTACTTAGGTACCCCTGAT
1 TGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTGAT
* * * * *
16030236 TGCACATGCGTTCCCCT-GTTGTACTT-GAGTGCCCTTGAT
1 TGCACATACGTGCCCCTATTTGTACTTCG-GTACCCCTGAT
* * * ** *
16030275 TGCACATACATGCCCTTGTTTGTACTTCGGTACTTCTGAA
1 TGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTGAT
*
16030315 TGCACTTACGTGCCCCT
1 TGCACATACGTGCCCCT
16030332 GATTATATTC
Statistics
Matches: 138, Mismatches: 21, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
33 30 0.22
36 2 0.01
37 2 0.01
38 1 0.01
39 30 0.22
40 72 0.52
41 1 0.01
ACGTcount: A:0.17, C:0.30, G:0.18, T:0.34
Consensus pattern (40 bp):
TGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTGAT
Found at i:16030198 original size:20 final size:20
Alignment explanation
Indices: 16030135--16030199 Score: 62
Period size: 20 Copynumber: 3.2 Consensus size: 20
16030125 CACATATGTG
*
16030135 CCCCTATTTGTACTTCGATA
1 CCCCTATTTGTACTTCGGTA
* * *
16030155 CCCCTGA-TTGCACATAC-GTG
1 CCCCT-ATTTGTAC-TTCGGTA
16030175 CCCCTATTTGTACTTCGGTA
1 CCCCTATTTGTACTTCGGTA
16030195 CCCCT
1 CCCCT
16030200 GATACGTGCC
Statistics
Matches: 34, Mismatches: 7, Indels: 8
0.69 0.14 0.16
Matches are distributed among these distances:
19 3 0.09
20 28 0.82
21 3 0.09
ACGTcount: A:0.17, C:0.35, G:0.14, T:0.34
Consensus pattern (20 bp):
CCCCTATTTGTACTTCGGTA
Found at i:16030210 original size:33 final size:33
Alignment explanation
Indices: 16030168--16030235 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
16030158 CTGATTGCAC
*
16030168 ATACGTGCCCCTATTTGTACTTCGGTACCCCTG
1 ATACGTGCCCCTATTTGTACTTAGGTACCCCTG
16030201 ATACGTGCCCCTATTTGTACTTAGGTACCCCTG
1 ATACGTGCCCCTATTTGTACTTAGGTACCCCTG
16030234 AT
1 AT
16030236 TGCACATGCG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.18, C:0.31, G:0.18, T:0.34
Consensus pattern (33 bp):
ATACGTGCCCCTATTTGTACTTAGGTACCCCTG
Found at i:16030251 original size:20 final size:20
Alignment explanation
Indices: 16030228--16030281 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 20
16030218 TACTTAGGTA
* *
16030228 CCCCTGATTGCACATGCGTT
1 CCCCTGATTGCACATGAGTG
* *
16030248 CCCCTG-TTGTACTTGAGTG
1 CCCCTGATTGCACATGAGTG
*
16030267 CCCTTGATTGCACAT
1 CCCCTGATTGCACAT
16030282 ACATGCCCTT
Statistics
Matches: 26, Mismatches: 7, Indels: 2
0.74 0.20 0.06
Matches are distributed among these distances:
19 14 0.54
20 12 0.46
ACGTcount: A:0.15, C:0.31, G:0.20, T:0.33
Consensus pattern (20 bp):
CCCCTGATTGCACATGAGTG
Found at i:16035885 original size:21 final size:20
Alignment explanation
Indices: 16035861--16035925 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
16035851 TACTTCGGTA
16035861 CCCTAGATTGCACATACGTGC
1 CCCTAGATTGCAC-TACGTGC
* * * *
16035882 CCCT-GTTTGTACTTCGGTAC
1 CCCTAGATTGCACTAC-GTGC
16035902 CCCTA-ATTGCACGTACGTGC
1 CCCTAGATTGCAC-TACGTGC
16035922 CCCT
1 CCCT
16035926 GTTGTCCTTC
Statistics
Matches: 33, Mismatches: 8, Indels: 7
0.69 0.17 0.15
Matches are distributed among these distances:
19 2 0.06
20 25 0.76
21 6 0.18
ACGTcount: A:0.17, C:0.35, G:0.18, T:0.29
Consensus pattern (20 bp):
CCCTAGATTGCACTACGTGC
Found at i:16035938 original size:79 final size:77
Alignment explanation
Indices: 16035830--16036088 Score: 365
Period size: 79 Copynumber: 3.3 Consensus size: 77
16035820 ATTATATGAA
*
16035830 TGCACATACGTGCCCGTATTGTACTTCGGTACCCTAGATTGCACATACGTGCCCCTGTTTGTACT
1 TGCACATACGTGCCCCTATTGTACTTCGGTACCCT-GATTGCACATACGTGCCCCTG-TTGTACT
*
16035895 TCGGTACCCCTAAT
64 TCGGTACCCCTGAT
* * * *
16035909 TGCACGTACGTGCCCCTGTTGTCCTTCGGTACACCTGATTGCACATACGTGGCCCTGTTGTACTT
1 TGCACATACGTGCCCCTATTGTACTTCGGTAC-CCTGATTGCACATACGTGCCCCTGTTGTACTT
*
16035974 CGATACCCCTGAT
65 CGGTACCCCTGAT
* * * * *
16035987 TGCACATACGTGCCCTTGTTTGTACTTCAGTACACTTGATTACACATACGTGCCCCTGTTGTACT
1 TGCACATACGTGCCCCT-ATTGTACTTCGGTAC-CCTGATTGCACATACGTGCCCCTGTTGTACT
16036052 TCGGTACCCCTGAT
64 TCGGTACCCCTGAT
16036066 TGCACATACGTGCCCCTATTGTA
1 TGCACATACGTGCCCCTATTGTA
16036089 ACACCCCGAA
Statistics
Matches: 160, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
78 39 0.24
79 118 0.74
80 3 0.02
ACGTcount: A:0.18, C:0.31, G:0.19, T:0.32
Consensus pattern (77 bp):
TGCACATACGTGCCCCTATTGTACTTCGGTACCCTGATTGCACATACGTGCCCCTGTTGTACTTC
GGTACCCCTGAT
Found at i:16035950 original size:39 final size:39
Alignment explanation
Indices: 16035830--16036088 Score: 358
Period size: 39 Copynumber: 6.6 Consensus size: 39
16035820 ATTATATGAA
* *
16035830 TGCACATACGTGCCCGTATTGTACTTCGGTA-CCCTAGAT
1 TGCACATACGTGCCCCTGTTGTACTTCGGTACCCCT-GAT
*
16035869 TGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTAAT
1 TGCACATACGTGCCCCTG-TTGTACTTCGGTACCCCTGAT
* * *
16035909 TGCACGTACGTGCCCCTGTTGTCCTTCGGTACACCTGAT
1 TGCACATACGTGCCCCTGTTGTACTTCGGTACCCCTGAT
* *
16035948 TGCACATACGTGGCCCTGTTGTACTTCGATACCCCTGAT
1 TGCACATACGTGCCCCTGTTGTACTTCGGTACCCCTGAT
* * * *
16035987 TGCACATACGTGCCCTTGTTTGTACTTCAGTACACTTGAT
1 TGCACATACGTGCCCCTG-TTGTACTTCGGTACCCCTGAT
*
16036027 TACACATACGTGCCCCTGTTGTACTTCGGTACCCCTGAT
1 TGCACATACGTGCCCCTGTTGTACTTCGGTACCCCTGAT
*
16036066 TGCACATACGTGCCCCTATTGTA
1 TGCACATACGTGCCCCTGTTGTA
16036089 ACACCCCGAA
Statistics
Matches: 192, Mismatches: 25, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
39 123 0.64
40 65 0.34
41 4 0.02
ACGTcount: A:0.18, C:0.31, G:0.19, T:0.32
Consensus pattern (39 bp):
TGCACATACGTGCCCCTGTTGTACTTCGGTACCCCTGAT
Found at i:16036002 original size:19 final size:20
Alignment explanation
Indices: 16035942--16036002 Score: 56
Period size: 19 Copynumber: 3.1 Consensus size: 20
16035932 CTTCGGTACA
*
16035942 CCTGATTGCACATACGTGGC
1 CCTGATTGCACATACGTAGC
* * *
16035962 CCTG-TTGTAC-TTCGATACC
1 CCTGATTGCACATACG-TAGC
16035981 CCTGATTGCACATACGT-GC
1 CCTGATTGCACATACGTAGC
16036000 CCT
1 CCT
16036003 TGTTTGTACT
Statistics
Matches: 31, Mismatches: 7, Indels: 7
0.69 0.16 0.16
Matches are distributed among these distances:
18 3 0.10
19 15 0.48
20 10 0.32
21 3 0.10
ACGTcount: A:0.18, C:0.33, G:0.20, T:0.30
Consensus pattern (20 bp):
CCTGATTGCACATACGTAGC
Found at i:16036038 original size:118 final size:118
Alignment explanation
Indices: 16035830--16036088 Score: 378
Period size: 118 Copynumber: 2.2 Consensus size: 118
16035820 ATTATATGAA
*
16035830 TGCACATACGT-GCCCGTATTGTACTTCGGTACCCTAGATTGCACATACGTGCCCCTGTTTGTAC
1 TGCACATACGTGGCCC-TATTGTACTTCGATACCCTAGATTGCACATACGTGCCCCTGTTTGTAC
* * * * *
16035894 TTCGGTACCCCTAATTGCACGTACGTGCCCCTGTTGTCCTTCGGTACACCTGAT
65 TTCAGTACACCTAATTACACATACGTGCCCCTGTTGTACTTCGGTACACCTGAT
* *
16035948 TGCACATACGTGGCCCTGTTGTACTTCGATACCCCT-GATTGCACATACGTGCCCTTGTTTGTAC
1 TGCACATACGTGGCCCTATTGTACTTCGATA-CCCTAGATTGCACATACGTGCCCCTGTTTGTAC
* * *
16036012 TTCAGTACACTTGATTACACATACGTGCCCCTGTTGTACTTCGGTACCCCTGAT
65 TTCAGTACACCTAATTACACATACGTGCCCCTGTTGTACTTCGGTACACCTGAT
*
16036066 TGCACATACGTGCCCCTATTGTA
1 TGCACATACGTGGCCCTATTGTA
16036089 ACACCCCGAA
Statistics
Matches: 126, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
118 118 0.94
119 8 0.06
ACGTcount: A:0.18, C:0.31, G:0.19, T:0.32
Consensus pattern (118 bp):
TGCACATACGTGGCCCTATTGTACTTCGATACCCTAGATTGCACATACGTGCCCCTGTTTGTACT
TCAGTACACCTAATTACACATACGTGCCCCTGTTGTACTTCGGTACACCTGAT
Found at i:16037557 original size:40 final size:40
Alignment explanation
Indices: 16037466--16037635 Score: 198
Period size: 40 Copynumber: 4.3 Consensus size: 40
16037456 TCCTCGTTCA
* * * *
16037466 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
* * * *
16037505 CATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
*
16037545 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCACACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
* * * * *
16037585 AATGCCCTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
*
16037625 AAGGCCTTCGG
1 AATGCCTTCGG
16037636 ATCTTAGTCC
Statistics
Matches: 110, Mismatches: 20, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
39 32 0.29
40 78 0.71
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
Found at i:16037567 original size:79 final size:80
Alignment explanation
Indices: 16037464--16037635 Score: 229
Period size: 80 Copynumber: 2.2 Consensus size: 80
16037454 GCTCCTCGTT
* * * * *
16037464 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-CATGCCTTCGGGACGTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGCTTTAATAACTCACACGAATGCCCTCGGGACGTAACCCGG
16037528 ATTTAACAACTCGCA
66 ATTTAACAACTCGCA
* * *
16037543 CGAATGCCTTCGGGACTTAACCCGGCTTTAATAACTCACACGAATGCCCTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGCTTTAATAACTCACACGAATGCCCTCGGGACGTAACCCGG
** *
16037608 ATTTAGTATCTCGCA
66 ATTTAACAACTCGCA
*
16037623 CAAAGGCCTTCGG
1 CAAATGCCTTCGG
16037636 ATCTTAGTCC
Statistics
Matches: 79, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
79 36 0.46
80 43 0.54
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACATAACCCGGCTTTAATAACTCACACGAATGCCCTCGGGACGTAACCCGG
ATTTAACAACTCGCA
Done.