Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53248092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1300000 characters in sequence are not A, C, G, or T
File 55 of 175
Found at i:16045467 original size:40 final size:40
Alignment explanation
Indices: 16045376--16045545 Score: 198
Period size: 40 Copynumber: 4.3 Consensus size: 40
16045366 TCCTCGTTCA
* * * *
16045376 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
* * * *
16045415 CATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
*
16045455 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCACACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
* * * * *
16045495 AATGCCCTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
*
16045535 AAGGCCTTCGG
1 AATGCCTTCGG
16045546 ATCTTAGTCC
Statistics
Matches: 110, Mismatches: 20, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
39 32 0.29
40 78 0.71
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
Found at i:16045477 original size:79 final size:80
Alignment explanation
Indices: 16045374--16045545 Score: 229
Period size: 80 Copynumber: 2.2 Consensus size: 80
16045364 GCTCCTCGTT
* * * * *
16045374 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-CATGCCTTCGGGACGTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGCTTTAATAACTCACACGAATGCCCTCGGGACGTAACCCGG
16045438 ATTTAACAACTCGCA
66 ATTTAACAACTCGCA
* * *
16045453 CGAATGCCTTCGGGACTTAACCCGGCTTTAATAACTCACACGAATGCCCTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGCTTTAATAACTCACACGAATGCCCTCGGGACGTAACCCGG
** *
16045518 ATTTAGTATCTCGCA
66 ATTTAACAACTCGCA
*
16045533 CAAAGGCCTTCGG
1 CAAATGCCTTCGG
16045546 ATCTTAGTCC
Statistics
Matches: 79, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
79 36 0.46
80 43 0.54
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACATAACCCGGCTTTAATAACTCACACGAATGCCCTCGGGACGTAACCCGG
ATTTAACAACTCGCA
Found at i:16047146 original size:40 final size:39
Alignment explanation
Indices: 16047097--16047178 Score: 128
Period size: 40 Copynumber: 2.1 Consensus size: 39
16047087 GGCTGTCACA
* *
16047097 CCTATTGTACTTCGATACCCTTGATTGCACATACATGCC
1 CCTATTGTACTTCAATACCCCTGATTGCACATACATGCC
*
16047136 CCTATTTGTACTTCAATACCCCTGATTGCACATACGTGCC
1 CCTA-TTGTACTTCAATACCCCTGATTGCACATACATGCC
16047176 CCT
1 CCT
16047179 GATTACACAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
39 4 0.10
40 35 0.90
ACGTcount: A:0.22, C:0.33, G:0.12, T:0.33
Consensus pattern (39 bp):
CCTATTGTACTTCAATACCCCTGATTGCACATACATGCC
Found at i:16047215 original size:60 final size:59
Alignment explanation
Indices: 16047118--16047238 Score: 170
Period size: 60 Copynumber: 2.0 Consensus size: 59
16047108 TCGATACCCT
* *
16047118 TGATTGCACATACATGCCCCTATTTGTACTTCAATACCCCTGATTGCACATACGTGCCCC
1 TGATTACACATACATGCCCCTATTTGTACTTCAATA-CCCTAATTGCACATACGTGCCCC
** * * *
16047178 TGATTACACATATGTGCCCTTATTTGTACTTCGATACCCTAATTGTACATACGTGCCCC
1 TGATTACACATACATGCCCCTATTTGTACTTCAATACCCTAATTGCACATACGTGCCCC
16047237 TG
1 TG
16047239 TTTGTACTTC
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
59 23 0.43
60 31 0.57
ACGTcount: A:0.23, C:0.30, G:0.14, T:0.33
Consensus pattern (59 bp):
TGATTACACATACATGCCCCTATTTGTACTTCAATACCCTAATTGCACATACGTGCCCC
Found at i:16047266 original size:79 final size:79
Alignment explanation
Indices: 16047174--16047616 Score: 416
Period size: 79 Copynumber: 5.6 Consensus size: 79
16047164 CACATACGTG
* * * * *
16047174 CCCCTGATTACACATATGTGCCCTTATTTGTACTTCGATA-CCCTAATTGTACATACGTGCCCCT
1 CCCCTGATTACACATACGTGCCCCT-GTTGTACTTCGATACCCCTGATTGCACATACGTGCCCCT
16047238 GTTTGTACTTCAGTA
65 GTTTGTACTTCAGTA
* * * *
16047253 CCCCTGATTACACATACGTGCCCCTGTTGTACTTCGATGCCCTTGATTGCACATACTTTCCCCTG
1 CCCCTGATTACACATACGTGCCCCTGTTGTACTTCGATACCCCTGATTGCACATACGTGCCCCTG
16047318 TTTGTACTTCCA-TA
66 TTTGTACTT-CAGTA
* * * * * * * *
16047332 CTCCTGATTGCACATACGTGCCCCTGTTGTTCTTCGGTACCCCTGATTGTACATAAGTTCCCCTA
1 CCCCTGATTACACATACGTGCCCCTGTTGTACTTCGATACCCCTGATTGCACATACGTGCCCCTG
16047397 TTTGTACTTC-GATA
66 TTTGTACTTCAG-TA
* * * * ** * *
16047411 CCCTTGATTGCACATACGTGCCCCTATTTGTACTTTGATACCTTTAATTGCACATACGTGCCACT
1 CCCCTGATTACACATACGTGCCCCT-GTTGTACTTCGATACCCCTGATTGCACATACGTGCCCCT
* *
16047476 GTTTGTACTTTACTA
65 GTTTGTACTTCAGTA
*** * * * * * *
16047491 CATGTGATTACACATACGTGCCCCTATTGTACTT-TAGTAGCCTTGATTGCATATACGTGCCCTT
1 CCCCTGATTACACATACGTGCCCCTGTTGTACTTCGA-TACCCCTGATTGCACATACGTGCCCCT
16047555 G-TTGTACTTC-GATA
65 GTTTGTACTTCAG-TA
* * *
16047569 CCCCTGATTGCACATACATGCCCTTGTTGTACTTC-ATTACCCCT-ATTG
1 CCCCTGATTACACATACGTGCCCCTGTTGTACTTCGA-TACCCCTGATTG
16047617 TACTTTGATA
Statistics
Matches: 296, Mismatches: 59, Indels: 20
0.79 0.16 0.05
Matches are distributed among these distances:
77 4 0.01
78 57 0.19
79 173 0.58
80 62 0.21
ACGTcount: A:0.20, C:0.28, G:0.15, T:0.37
Consensus pattern (79 bp):
CCCCTGATTACACATACGTGCCCCTGTTGTACTTCGATACCCCTGATTGCACATACGTGCCCCTG
TTTGTACTTCAGTA
Found at i:16047278 original size:40 final size:40
Alignment explanation
Indices: 16047174--16048321 Score: 412
Period size: 39 Copynumber: 29.1 Consensus size: 40
16047164 CACATACGTG
* * * *
16047174 CCCCTGATTACACATATGTGCCCTTATTTGTACTTC-GATA
1 CCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCAG-TA
* *
16047214 -CCCTAATTGTACATACGTGCCCCTGTTTGTACTTCAGTA
1 CCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCAGTA
* *
16047253 CCCCTGATTACACATACGTGCCCCTG-TTGTACTTC-GATG
1 CCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCAG-TA
* * *
16047292 CCCTTGATTGCACATACTTTCCCCTGTTTGTACTTCCA-TA
1 CCCCTGATTGCACATACGTGCCCCTGTTTGTACTT-CAGTA
* * *
16047332 CTCCTGATTGCACATACGTGCCCCTG-TTGTTCTTCGGTA
1 CCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCAGTA
* * * *
16047371 CCCCTGATTGTACATAAGTTCCCCTATTTGTACTTC-GATA
1 CCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCAG-TA
* * *
16047411 CCCTTGATTGCACATACGTGCCCCTATTTGTACTT-TGATA
1 CCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCAG-TA
** * * * *
16047451 CCTTTAATTGCACATACGTGCCACTGTTTGTACTTTACTA
1 CCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCAGTA
*** * * *
16047491 CATGTGATTACACATACGTGCCCCT-ATTGTACTTTAGTA
1 CCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCAGTA
* * * *
16047530 GCCTTGATTGCATATACGTGCCCTTG-TTGTACTTC-GATA
1 CCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCAG-TA
* * *
16047569 CCCCTGATTGCACATACATGCCCTTG-TTGTACTTCATTA
1 CCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCAGTA
* ** * * * * *
16047608 CCCCT-ATTGTAC-TTTGATACCCCTGATTGCACATACA-TG
1 CCCCTGATTGCACATACG-TGCCCCTGTTTGTAC-TTCAGTA
* * * * * * * * * * *
16047647 CCCCTGTTTGTACTTCCATACTCCTGATTGCACAT-ACGTG
1 CCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCA-GTA
* * * * * * *
16047687 CCCCT-ATTGTAC-TTCGGTACCCCTGATTGCACAT-ACGTG
1 CCCCTGATTGCACATAC-GTGCCCCTGTTTGTACTTCA-GTA
* * * * * * * *
16047726 CCCCTGTTTGTAC-TTCGATACCCCTGATTGCACAT-ACGTG
1 CCCCTGATTGCACATACG-TGCCCCTGTTTGTACTTCA-GTA
* * * * * * * * *
16047766 CCCCTGTTTGTAC-TTCGATACCCTTGATTGCACATACGTGTA
1 CCCCTGATTGCACATACG-TGCCCCTGTTTGTAC-TTC-AGTA
* * * * * * ** * *
16047808 --ACT-ATTTGTACTTTA-GTACCCGTGATTACACAT-ACGTG
1 CCCCTGA-TTGCAC-ATACGTGCCCCTGTTTGTACTTCA-GTA
* * * ** * * *
16047846 CCCCT-ATTGTAC-TTCGGTACCCCTAATTGCACAT-ACGTG
1 CCCCTGATTGCACATAC-GTGCCCCTGTTTGTACTTCA-GTA
* * * * * * * *
16047885 CCCTTG-TTGTAC-TTCGATACCCCTGATTGCACATACA-TG
1 CCCCTGATTGCACATACG-TGCCCCTGTTTGTAC-TTCAGTA
* * * * *
16047924 CCCTTG-TTGTAC-TTCAGTACCCCTG-TTGTACTT-TGATA
1 CCCCTGATTGCACATAC-GTGCCCCTGTTTGTACTTCAG-TA
* * * *
16047962 CCCCTGATTGCACATACATTCCCTTGTTCT-TACTTCGGTA
1 CCCCTGATTGCACATACGTGCCCCTGTT-TGTACTTCAGTA
* * *
16048002 CCCTTGATTGCACATACCTGCCCCTG-TTGTACTTC-GATG
1 CCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCAG-TA
*
16048041 CCCCTGATTGTACATACGTGCCCCTGTTTGTACTTTCA-TA
1 CCCCTGATTGCACATACGTGCCCCTGTTTGTAC-TTCAGTA
* * * **
16048081 CTCCTGATTGCACATACATGCCCCT-ATTGTACTTTGGTA
1 CCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCAGTA
*
16048120 CCCCTGATTGCACATACGTGCCACTGTTTGTACTTC-GATA
1 CCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCAG-TA
* * * * *
16048160 CCCTTGATTGCACATACGTGGCACTATTTGTACTTTAGTA
1 CCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCAGTA
* * * * *
16048200 CCCGTGATTACACATACGTG-GCCT-ATTGTACTTCGGTA
1 CCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCAGTA
* *
16048238 CCCCTAATTGCACATACGTGCCCTTG-TTGTACTTC-GATA
1 CCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCAG-TA
* *
16048277 CCCCTGATTGCACATACATGCCCTTG-TTGTACTTCAGTA
1 CCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCAGTA
16048316 CCCCTG
1 CCCCTG
16048322 TTGTACTTTG
Statistics
Matches: 898, Mismatches: 150, Indels: 121
0.77 0.13 0.10
Matches are distributed among these distances:
37 3 0.00
38 65 0.07
39 423 0.47
40 394 0.44
41 10 0.01
42 3 0.00
ACGTcount: A:0.20, C:0.29, G:0.16, T:0.35
Consensus pattern (40 bp):
CCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCAGTA
Found at i:16047689 original size:98 final size:97
Alignment explanation
Indices: 16047511--16048202 Score: 287
Period size: 99 Copynumber: 7.0 Consensus size: 97
16047501 CACATACGTG
* * * * * *
16047511 CCCCTATTGTACTTTAGTAGCCTTGATTGCATATACGTGCCCTTGTTGTACTTCGATACCCCTGA
1 CCCCTATTGTACTTTAGTACCCCTGATTGCACATACATGCCCCTGTTGTACTTCCATACCCCTGA
* * *
16047576 TTGCACATACATGCCCTTGTTGTACTTCATTA
66 TTGCACATACATGCCCCTATTGTACTTCAGTA
*
16047608 CCCCTATTGTACTTT-GATACCCCTGATTGCACATACATGCCCCTGTTTGTACTTCCATACTCCT
1 CCCCTATTGTACTTTAG-TACCCCTGATTGCACATACATGCCCCTG-TTGTACTTCCATACCCCT
* *
16047672 GATTGCACATACGTGCCCCTATTGTACTTCGGTA
64 GATTGCACATACATGCCCCTATTGTACTTCAGTA
* * * * * * * * * * * *
16047706 CCCCTGATTGCAC-ATACGTGCCCCTGTTTGTAC-TTCGATACCCCTGATTGCACATACGTGCCC
1 CCCCT-ATTGTACTTTA-GTACCCCTGATTGCACATAC-ATGCCCCTG-TTGTACTTCCATACCC
* * * * * * * *
16047769 CTGTTTGTAC-TTCGATACCCTTGATTGCACATACGTGTA
62 CTGATTGCACATAC-ATGCCCCT-ATTGTAC-TTC-AGTA
* * * * * ** *
16047808 --ACTATTTGTACTTTAGTACCCGTGATTACACATACGTGCCCCTATTGTACTTCGGTACCCCTA
1 CCCCTA-TTGTACTTTAGTACCCCTGATTGCACATACATGCCCCTGTTGTACTTCCATACCCCTG
* * *
16047871 ATTGCACATACGTGCCCTTGTTGTACTTC-GATA
65 ATTGCACATACATGCCCCTATTGTACTTCAG-TA
* * * * * * * * **
16047904 CCCCTGATTGCAC-ATACATGCCCTTG-TTGTAC-TTCAGTACCCCTGTTGTACTTTGATACCCC
1 CCCCT-ATTGTACTTTA-GTACCCCTGATTGCACATACA-TGCCCCTGTTGTACTTCCATACCCC
* * * * *
16047966 TGATTGCACATACATTCCCTTGTTCTTACTTCGGTA
63 TGATTGCACATACATGCCCCTATT-GTACTTCAGTA
* * * * * * * * * * *
16048002 CCCTTGATTGCAC-ATACCTGCCCCTG-TTGTAC-TTCGATGCCCCTGATTGTACATACGTGCCC
1 CCCCT-ATTGTACTTTA-GTACCCCTGATTGCACATAC-ATGCCCCTG-TTGTACTTCCATACCC
* * * * * * * * *
16048064 CTGTTTGTACTTTCATACTCCTGATTGCACATACA-TG
62 CTGATTGCACATACATGCCCCT-ATTGTAC-TTCAGTA
* * * * *
16048101 CCCCTATTGTACTTTGGTACCCCTGATTGCACATACGTGCCACTGTTTGTACTTCGATACCCTTG
1 CCCCTATTGTACTTTAGTACCCCTGATTGCACATACATGCCCCTG-TTGTACTTCCATACCCCTG
* * * *
16048166 ATTGCACATACGTGGCACTATTTGTACTTTAGTA
65 ATTGCACATACATGCCCCTA-TTGTACTTCAGTA
16048200 CCC
1 CCC
16048203 GTGATTACAC
Statistics
Matches: 433, Mismatches: 131, Indels: 60
0.69 0.21 0.10
Matches are distributed among these distances:
95 1 0.00
96 5 0.01
97 88 0.20
98 136 0.31
99 155 0.36
100 39 0.09
101 6 0.01
102 3 0.01
ACGTcount: A:0.19, C:0.30, G:0.16, T:0.35
Consensus pattern (97 bp):
CCCCTATTGTACTTTAGTACCCCTGATTGCACATACATGCCCCTGTTGTACTTCCATACCCCTGA
TTGCACATACATGCCCCTATTGTACTTCAGTA
Found at i:16047708 original size:79 final size:79
Alignment explanation
Indices: 16047608--16048950 Score: 699
Period size: 79 Copynumber: 17.1 Consensus size: 79
16047598 TACTTCATTA
* * * * *
16047608 CCCCTATTGTACTTTGATACCCCTGATTGCACATACATGCCCCTGTTTGTACTTCCATACTCCTG
1 CCCCTATTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCCTG
16047673 ATTGCACATACGTG
66 ATTGCACATACGTG
16047687 CCCCTATTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCCTG
1 CCCCTATTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCCTG
16047752 ATTGCACATACGTG
66 ATTGCACATACGTG
* * * *** * * *
16047766 CCCCTGTTTGTACTTCGATACCCTTGATTGCACATACGTGTAACTATTTGTACTT-TAGTACCCG
1 CCCCT-ATTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCGA-TACCCC
*
16047830 TGATTACACATACGTG
64 TGATTGCACATACGTG
* *
16047846 CCCCTATTGTACTTCGGTACCCCTAATTGCACATACGTGCCCTTG-TTGTACTTCGATACCCCTG
1 CCCCTATTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCCTG
*
16047910 ATTGCACATACATG
66 ATTGCACATACGTG
* * * * ** * * * * * *
16047924 CCCTTGTTGTACTTCAGTACCCCTG-TTGTAC-TTTGATACCCCTGATTGCACATAC-ATTCCCT
1 CCCCTATTGTACTTCGGTACCCCTGATTGCACATACG-TGCCCCTGTTTGTAC-TTCGATACCCC
* *
16047986 TG-TT-CTTAC-TTCGGTA
64 TGATTGC--ACATAC-GTG
* * * * * * * * * *
16048002 CCCTTGATTGCACATAC-CTGCCCCTG-TTGTAC-TTCGATGCCCCTGATTGTACATACG-TGCC
1 CCCCT-ATTGTAC-TTCGGTACCCCTGATTGCACATACG-TGCCCCTGTTTGTAC-TTCGATACC
* * * * * *
16048063 CCTGTTTGTACTTTCATA
62 CCTGATTGCACATACGTG
* * * * * * * ** * * * * * *
16048081 CTCCTGATTGCACATAC-ATGCCCCT-ATTGTACTTTGGTACCCCTGATTGCACATACG-TGCCA
1 CCCCT-ATTGTAC-TTCGGTACCCCTGATTGCACATACGTGCCCCTGTTTGTAC-TTCGATACCC
* * * *
16048143 CTGTTTGTAC-TTCGATA
63 CTGATTGCACATACG-TG
* * * ** * * * * * * ** * *
16048160 CCCTTGATTGCACATAC-GTGGCACT-ATTTGTACTTTA-GTACCCGTGATTACACATACG-T-G
1 CCCCT-ATTGTAC-TTCGGTACCCCTGA-TTGCAC-ATACGTGCCCCTGTTTGTAC-TTCGATAC
* * * *
16048220 GCCT-ATTGTAC-TTCGGTA
61 CCCTGATTGCACATAC-GTG
* * * * * * * * * * *
16048238 CCCCTAATTGCACATAC-GTGCCCTTG-TTGTAC-TTCGATACCCCTGATTGCACATAC-ATGCC
1 CCCCT-ATTGTAC-TTCGGTACCCCTGATTGCACATACG-TGCCCCTGTTTGTAC-TTCGATACC
* * * *
16048299 CTTG-TTGTAC-TTCAGTA
62 CCTGATTGCACATAC-GTG
* * * * * * * *
16048316 CCCCTGTTGTACTTTGATACCCCTGATTGCACATACATTCCCTTGTTCT-TACTTCGGTACCCTT
1 CCCCTATTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTT-TGTACTTCGATACCCCT
*
16048380 GATTGCACATACCTG
65 GATTGCACATACGTG
* * * * *
16048395 CCCCTGTTGTACTTCGATGCCCCTGATTGTACATACGTGCCCCTGTTTGTACTTTC-ATACTCCT
1 CCCCTATTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTTTGTAC-TTCGATACCCCT
*
16048459 GATTGCACATACATG
65 GATTGCACATACGTG
* *
16048474 CCCCTATTGTACTTTGGTACCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCTTG
1 CCCCTATTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCCTG
16048539 ATTGCACATACGTG
66 ATTGCACATACGTG
* * ** * * * * *
16048553 GCACTATTTGTACTTTAGTACCCGTGATTACACATACGTG-GCCT-ATTGTACTTCGGTACCCCT
1 CCCCTA-TTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCCT
16048616 GATTGCACATACGTG
65 GATTGCACATACGTG
* * * * * *
16048631 CCCTTGTTGTACTTCGATACCTCTGATTGCACAAACATGCCCCTG-TTGTACTTC-AGTACCCCT
1 CCCCTATTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCGA-TACCCCT
* * * *
16048694 AATTACACATACATT
65 GATTGCACATACGTG
* * * * *
16048709 CCCCTATTGTACTTTGATACCCCTGATTGCACATACATGCCCTTGTTCT-TACTTCGGTACCCCT
1 CCCCTATTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTT-TGTACTTCGATACCCCT
* *
16048773 GATTGTACATATGTG
65 GATTGCACATACGTG
* * *
16048788 CCCCTATTGTACTTCGGTGCCCCTGATTGCACGTACGTGCCCCTGTTTGTACTTTC-ATACTCCT
1 CCCCTATTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTTTGTAC-TTCGATACCCCT
*
16048852 AATTGCACATACGTG
65 GATTGCACATACGTG
* * * * * * * * *
16048867 TCCCTGTTATACTTTGGTACCCCTGATTTCACATACGTACCCCTGTTTGTACTACGGTACTCCTG
1 CCCCTATTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCCTG
* * *
16048932 AATGCACTTACATG
66 ATTGCACATACGTG
16048946 CCCCT
1 CCCCT
16048951 GATTATATTC
Statistics
Matches: 1024, Mismatches: 193, Indels: 94
0.78 0.15 0.07
Matches are distributed among these distances:
75 1 0.00
76 5 0.00
77 77 0.08
78 251 0.25
79 546 0.53
80 142 0.14
81 2 0.00
ACGTcount: A:0.19, C:0.30, G:0.16, T:0.35
Consensus pattern (79 bp):
CCCCTATTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCCTG
ATTGCACATACGTG
Found at i:16047713 original size:335 final size:334
Alignment explanation
Indices: 16047273--16048902 Score: 1650
Period size: 335 Copynumber: 4.9 Consensus size: 334
16047263 CACATACGTG
* * * * *
16047273 CCCCTGTTGTACTTCGATGCCCTTGATTGCACATACTTTCCCCTGTTTGTACTTCCATACTCCTG
1 CCCCTATTGTACTTTGATACCCCTGATTGCACATACATTCCCCTGTTTGTACTTCCATACTCCTG
* * * * *
16047338 ATTGCACATACGTGCCCCTGTTGTTCTTCGGTACCCCTGATTGTACATAAGTTCCCCTATTTGTA
66 ATTGCACATACGTGCCCCTGTTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTTTGTA
* ** *
16047403 CTTCGATACCCTTGATTGCACATACGTGCCCCTATTTGTACTTTGATACCTTTAATTGCACATAC
131 CTTCGATACCCCTGATTGCACATACGTGCCCCTATTTGTACTTTGATACCCCTGATTGCACATAC
* ** *
16047468 GTGCCACTGTTTGTACTTTACTACATGTGATTACACATACGTGCCCCTATTGTACTTTAGTAGCC
196 GTGCCACTGTTTGTACTTTAGTACCCGTGATTACACATACGTGCCCCTATTGTACTTTAGTACCC
*
16047533 TTGATTGCATATACGTGCCCTTGTTGTACTTCGATACCCCTGATTGCACATACATGCCCTTGTTG
261 TTGATTGCACATACGTGCCCTTGTTGTACTTCGATACCCCTGATTGCACATACATGCCCTTGTTG
16047598 TACTTCATTA
326 TACTTCA-TA
*
16047608 CCCCTATTGTACTTTGATACCCCTGATTGCACATACATGCCCCTGTTTGTACTTCCATACTCCTG
1 CCCCTATTGTACTTTGATACCCCTGATTGCACATACATTCCCCTGTTTGTACTTCCATACTCCTG
*
16047673 ATTGCACATACGTGCCCCTATTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTTTGTA
66 ATTGCACATACGTGCCCCTGTTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTTTGTA
* * *
16047738 CTTCGATACCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCTTGATTGCACATAC
131 CTTCGATACCCCTGATTGCACATACGTGCCCCTATTTGTACTTTGATACCCCTGATTGCACATAC
** * **
16047803 GTGTAACTATTTGTACTTTAGTACCCGTGATTACACATACGTGCCCCTATTGTACTTCGGTACCC
196 GTGCCACTGTTTGTACTTTAGTACCCGTGATTACACATACGTGCCCCTATTGTACTTTAGTACCC
* *
16047868 CTAATTGCACATACGTGCCCTTGTTGTACTTCGATACCCCTGATTGCACATACATGCCCTTGTTG
261 TTGATTGCACATACGTGCCCTTGTTGTACTTCGATACCCCTGATTGCACATACATGCCCTTGTTG
16047933 TACTTCAGTA
326 TACTTCA-TA
* * **
16047943 CCCCTGTTGTACTTTGATACCCCTGATTGCACATACATTCCCTTGTTCT-TACTTCGGTAC-CCT
1 CCCCTATTGTACTTTGATACCCCTGATTGCACATACATTCCCCTGTT-TGTACTTCCATACTCC-
* * * *
16048006 TGATTGCACATACCTGCCCCTGTTGTACTTCGATGCCCCTGATTGTACATACGTGCCCCTGTTTG
64 TGATTGCACATACGTGCCCCTGTTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTTTG
* * *
16048071 TACTTTC-ATACTCCTGATTGCACATACATGCCCCTA-TTGTACTTTGGTACCCCTGATTGCACA
129 TAC-TTCGATACCCCTGATTGCACATACGTGCCCCTATTTGTACTTTGATACCCCTGATTGCACA
* * * * *
16048134 TACGTGCCACTGTTTGTAC-TTCGATACCCTTGATTGCACATACGTGGCACTATTTGTACTTTAG
193 TACGTGCCACTGTTTGTACTTTAG-TACCCGTGATTACACATACGTGCCCCTA-TTGTACTTTAG
* * * * * * *
16048198 TACCCGTGATTACACATACGTGGCC-TATTGTACTTCGGTACCCCTAATTGCACATACGTGCCCT
256 TACCCTTGATTGCACATACGTGCCCTTGTTGTACTTCGATACCCCTGATTGCACATACATGCCCT
16048262 TGTTGTACTTCGATA
321 TGTTGTACTTC-ATA
* * ** * * * * * ** *
16048277 CCCCTGATTGCACATACATGCCCTTG-TTGTAC-TTCAGTACCCCTG-TTGTACTTTGATACCCC
1 CCCCT-ATTGTACTTTGATACCCCTGATTGCACATACA-TTCCCCTGTTTGTACTTCCATACTCC
* * * * * *
16048339 TGATTGCACATACATTCCCTTGTTCTTACTTCGGTACCCTTGATTGCACATACCTGCCCCTG-TT
64 TGATTGCACATACGTGCCCCTGTT-GTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTTT
* * * * *
16048403 GTACTTCGATGCCCCTGATTGTACATACGTGCCCCTGTTTGTACTTTCATACTCCTGATTGCACA
128 GTACTTCGATACCCCTGATTGCACATACGTGCCCCTATTTGTACTTTGATACCCCTGATTGCACA
* * * * * * * *
16048468 TACATGCCCCT-ATTGTACTTTGGTACCCCTGATTGCACATACGTGCCCCTGTTTGTAC-TTCGA
193 TACGTGCCACTGTTTGTACTTTAGTACCCGTGATTACACATACGTGCCCCT-ATTGTACTTTAG-
* * * *
16048531 TACCCTTGATTGCACATACGTGGCACTAT-TTGTACTT-TAGTACCCGTGATTACACATAC--G-
256 TACCCTTGATTGCACATACGT-GCCCT-TGTTGTACTTCGA-TACCCCTGATTGCACATACATGC
16048591 ---TG--G---------
318 CCTTGTTGTACTTCATA
* * * * * *
16048594 --CCTATTGTACTTCGGTACCCCTGATTGCACATACGTGCCCTTG-TTGTACTTCGATAC-CTCT
1 CCCCTATTGTACTTTGATACCCCTGATTGCACATACATTCCCCTGTTTGTACTTCCATACTC-CT
* * * * * * * *
16048655 GATTGCACAAACATGCCCCTGTTGTACTTCAGTACCCCTAATTACACATACATTCCCCT-ATTGT
65 GATTGCACATACGTGCCCCTGTTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTTTGT
* * * * * * *
16048719 ACTTTGATACCCCTGATTGCACATACATGCCCTTGTTCT-TACTTCGGTACCCCTGATTGTACAT
130 ACTTCGATACCCCTGATTGCACATACGTGCCCCTATT-TGTACTTTGATACCCCTGATTGCACAT
* * * ** * * * * *
16048783 ATGTGCCCCT-ATTGTACTTCGGTGCCCCTGATTGCACGTACGTGCCCCTGTTTGTACTTTCA-T
194 ACGTGCCACTGTTTGTACTTTAGTACCCGTGATTACACATACGTGCCCCT-ATTGTACTTT-AGT
* * * * *
16048846 ACTCC-TAATTGCACATACGTGTCCC-TGTTATACTTTGGTACCCCTGATTTCACATAC
257 AC-CCTTGATTGCACATACGTG-CCCTTGTTGTACTTCGATACCCCTGATTGCACATAC
16048903 GTACCCCTGT
Statistics
Matches: 1106, Mismatches: 158, Indels: 84
0.82 0.12 0.06
Matches are distributed among these distances:
312 1 0.00
313 25 0.02
314 170 0.15
315 54 0.05
316 2 0.00
327 1 0.00
329 2 0.00
332 7 0.01
333 123 0.11
334 201 0.18
335 515 0.47
336 5 0.00
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.35
Consensus pattern (334 bp):
CCCCTATTGTACTTTGATACCCCTGATTGCACATACATTCCCCTGTTTGTACTTCCATACTCCTG
ATTGCACATACGTGCCCCTGTTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTTTGTA
CTTCGATACCCCTGATTGCACATACGTGCCCCTATTTGTACTTTGATACCCCTGATTGCACATAC
GTGCCACTGTTTGTACTTTAGTACCCGTGATTACACATACGTGCCCCTATTGTACTTTAGTACCC
TTGATTGCACATACGTGCCCTTGTTGTACTTCGATACCCCTGATTGCACATACATGCCCTTGTTG
TACTTCATA
Found at i:16047856 original size:119 final size:117
Alignment explanation
Indices: 16047608--16047948 Score: 461
Period size: 119 Copynumber: 2.9 Consensus size: 117
16047598 TACTTCATTA
* * *
16047608 CCCCTATTGTACTTTGATACCCCTGATTGCACATACATGCCCCTGTTTGTACTTCCATACTCCTG
1 CCCCTATTGTACTTCGATACCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCGATAC-CCTG
** * *
16047673 ATTGCACATACGTGCCCCTATTGTACTTCGGTACCCCTGATTGCACATACGTG
65 ATTGCACATACGTGCAACTATTGTACTTCAGTACCCCTGATTACACATACGTG
*
16047726 CCCCTGTTTGTACTTCGATACCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCTT
1 CCCCT-ATTGTACTTCGATACCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCC-T
* * *
16047791 GATTGCACATACGTGTAACTATTTGTACTTTAGTACCCGTGATTACACATACGTG
64 GATTGCACATACGTGCAACTA-TTGTACTTCAGTACCCCTGATTACACATACGTG
* * *
16047846 CCCCTATTGTACTTCGGTACCCCTAATTGCACATACGTGCCCTTG-TTGTACTTCGATACCCCTG
1 CCCCTATTGTACTTCGATACCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCGATA-CCCTG
* * *
16047910 ATTGCACATACATGC-CCTTGTTGTACTTCAGTACCCCTG
65 ATTGCACATACGTGCAAC-TATTGTACTTCAGTACCCCTG
16047949 TTGTACTTTG
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
117 18 0.09
118 36 0.18
119 109 0.55
120 34 0.17
ACGTcount: A:0.20, C:0.31, G:0.16, T:0.34
Consensus pattern (117 bp):
CCCCTATTGTACTTCGATACCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCTGA
TTGCACATACGTGCAACTATTGTACTTCAGTACCCCTGATTACACATACGTG
Found at i:16048422 original size:39 final size:39
Alignment explanation
Indices: 16048316--16048951 Score: 607
Period size: 39 Copynumber: 16.2 Consensus size: 39
16048306 TACTTCAGTA
* * *
16048316 CCCCTGTTGTACTTTGATACCCCTGATTGCACATACATT
1 CCCCTGTTGTACTTCGATACCCCTGATTGCACATACGTG
* * * * *
16048355 CCCTTGTTCTTACTTCGGTACCCTTGATTGCACATACCTG
1 CCCCTGTT-GTACTTCGATACCCCTGATTGCACATACGTG
* *
16048395 CCCCTGTTGTACTTCGATGCCCCTGATTGTACATACGTG
1 CCCCTGTTGTACTTCGATACCCCTGATTGCACATACGTG
* *
16048434 CCCCTGTTTGTACTTTC-ATACTCCTGATTGCACATACATG
1 CCCCTG-TTGTAC-TTCGATACCCCTGATTGCACATACGTG
* * *
16048474 CCCCTATTGTACTTTGGTACCCCTGATTGCACATACGTG
1 CCCCTGTTGTACTTCGATACCCCTGATTGCACATACGTG
*
16048513 CCCCTGTTTGTACTTCGATACCCTTGATTGCACATACGTG
1 CCCCTG-TTGTACTTCGATACCCCTGATTGCACATACGTG
* * * * * *
16048553 GCACTATTTGTACTT-TAGTACCCGTGATTACACATACGTG
1 CCCCT-GTTGTACTTCGA-TACCCCTGATTGCACATACGTG
* * *
16048593 -GCCTATTGTACTTCGGTACCCCTGATTGCACATACGTG
1 CCCCTGTTGTACTTCGATACCCCTGATTGCACATACGTG
* * * *
16048631 CCCTTGTTGTACTTCGATACCTCTGATTGCACAAACATG
1 CCCCTGTTGTACTTCGATACCCCTGATTGCACATACGTG
* * * *
16048670 CCCCTGTTGTACTTC-AGTACCCCTAATTACACATACATT
1 CCCCTGTTGTACTTCGA-TACCCCTGATTGCACATACGTG
* * *
16048709 CCCCTATTGTACTTTGATACCCCTGATTGCACATACATG
1 CCCCTGTTGTACTTCGATACCCCTGATTGCACATACGTG
* * * * *
16048748 CCCTTGTTCTTACTTCGGTACCCCTGATTGTACATATGTG
1 CCCCTGTT-GTACTTCGATACCCCTGATTGCACATACGTG
* * * *
16048788 CCCCTATTGTACTTCGGTGCCCCTGATTGCACGTACGTG
1 CCCCTGTTGTACTTCGATACCCCTGATTGCACATACGTG
* *
16048827 CCCCTGTTTGTACTTTC-ATACTCCTAATTGCACATACGTG
1 CCCCTG-TTGTAC-TTCGATACCCCTGATTGCACATACGTG
* * * * * *
16048867 TCCCTGTTATACTTTGGTACCCCTGATTTCACATACGTA
1 CCCCTGTTGTACTTCGATACCCCTGATTGCACATACGTG
* * * * * *
16048906 CCCCTGTTTGTACTACGGTACTCCTGAATGCACTTACATG
1 CCCCTG-TTGTACTTCGATACCCCTGATTGCACATACGTG
16048946 CCCCTG
1 CCCCTG
16048952 ATTATATTCA
Statistics
Matches: 484, Mismatches: 97, Indels: 31
0.79 0.16 0.05
Matches are distributed among these distances:
38 33 0.07
39 231 0.48
40 214 0.44
41 6 0.01
ACGTcount: A:0.19, C:0.30, G:0.16, T:0.35
Consensus pattern (39 bp):
CCCCTGTTGTACTTCGATACCCCTGATTGCACATACGTG
Found at i:16048798 original size:19 final size:20
Alignment explanation
Indices: 16047154--16048954 Score: 354
Period size: 20 Copynumber: 91.5 Consensus size: 20
16047144 TACTTCAATA
*
16047154 CCCCTGATTGCACATACGTG
1 CCCCTGATTGTACATACGTG
** *
16047174 CCCCTGATTACACATATGTG
1 CCCCTGATTGTACATACGTG
* *
16047194 -CCCTTATTTGTAC-TTCGAT-
1 CCCCTGA-TTGTACATACG-TG
* *
16047213 ACCCTAATTGTACATACGTG
1 CCCCTGATTGTACATACGTG
* * *
16047233 CCCCTGTTTGTAC-TTCAGTA
1 CCCCTGATTGTACATAC-GTG
**
16047253 CCCCTGATTACACATACGTG
1 CCCCTGATTGTACATACGTG
*
16047273 CCCCTG-TTGTAC-TTCGATG
1 CCCCTGATTGTACATACG-TG
* * * *
16047292 CCCTTGATTGCACATACTTT
1 CCCCTGATTGTACATACGTG
* * * * *
16047312 CCCCTGTTTGTACTTCCATA
1 CCCCTGATTGTACATACGTG
* *
16047332 CTCCTGATTGCACATACGTG
1 CCCCTGATTGTACATACGTG
* * *
16047352 CCCCTG-TTGTTC-TTCGGTA
1 CCCCTGATTGTACATAC-GTG
* *
16047371 CCCCTGATTGTACATAAGTT
1 CCCCTGATTGTACATACGTG
* *
16047391 CCCCT-ATTTGTAC-TTCGATA
1 CCCCTGA-TTGTACATACG-TG
* *
16047411 CCCTTGATTGCACATACGTG
1 CCCCTGATTGTACATACGTG
** *
16047431 CCCCT-ATTTGTAC-TTTGATA
1 CCCCTGA-TTGTACATACG-TG
** * *
16047451 CCTTTAATTGCACATACGTG
1 CCCCTGATTGTACATACGTG
* * * *
16047471 CCACTGTTTGTACTTTAC-TA
1 CCCCTGATTGTAC-ATACGTG
*** **
16047491 CATGTGATTACACATACGTG
1 CCCCTGATTGTACATACGTG
*
16047511 CCCCT-ATTGTACTTTA-GTAG
1 CCCCTGATTGTAC-ATACGT-G
* * *
16047531 -CCTTGATTGCATATACGTG
1 CCCCTGATTGTACATACGTG
* * *
16047550 CCCTTG-TTGTAC-TTCGATA
1 CCCCTGATTGTACATACG-TG
* *
16047569 CCCCTGATTGCACATACATG
1 CCCCTGATTGTACATACGTG
* * * *
16047589 CCCTTG-TTGTAC-TTCATTA
1 CCCCTGATTGTACATAC-GTG
** *
16047608 CCCCT-ATTGTAC-TTTGATA
1 CCCCTGATTGTACATACG-TG
* *
16047627 CCCCTGATTGCACATACATG
1 CCCCTGATTGTACATACGTG
* * * * *
16047647 CCCCTGTTTGTACTTCCATA
1 CCCCTGATTGTACATACGTG
* *
16047667 CTCCTGATTGCACATACGTG
1 CCCCTGATTGTACATACGTG
* *
16047687 CCCCT-ATTGTAC-TTCGGTA
1 CCCCTGATTGTACATAC-GTG
*
16047706 CCCCTGATTGCACATACGTG
1 CCCCTGATTGTACATACGTG
* * *
16047726 CCCCTGTTTGTAC-TTCGATA
1 CCCCTGATTGTACATACG-TG
*
16047746 CCCCTGATTGCACATACGTG
1 CCCCTGATTGTACATACGTG
* * *
16047766 CCCCTGTTTGTAC-TTCGATA
1 CCCCTGATTGTACATACG-TG
* *
16047786 CCCTTGATTGCACATACGTG
1 CCCCTGATTGTACATACGTG
*** * *
16047806 TAACT-ATTTGTACTTTA-GTA
1 CCCCTGA-TTGTAC-ATACGTG
* **
16047826 CCCGTGATTACACATACGTG
1 CCCCTGATTGTACATACGTG
* *
16047846 CCCCT-ATTGTAC-TTCGGTA
1 CCCCTGATTGTACATAC-GTG
* *
16047865 CCCCTAATTGCACATACGTG
1 CCCCTGATTGTACATACGTG
* * *
16047885 CCCTTG-TTGTAC-TTCGATA
1 CCCCTGATTGTACATACG-TG
* *
16047904 CCCCTGATTGCACATACATG
1 CCCCTGATTGTACATACGTG
* * *
16047924 CCCTTG-TTGTAC-TTCAGTA
1 CCCCTGATTGTACATAC-GTG
** *
16047943 CCCCTG-TTGTAC-TTTGATA
1 CCCCTGATTGTACATACG-TG
* * *
16047962 CCCCTGATTGCACATACATT
1 CCCCTGATTGTACATACGTG
* * * *
16047982 CCCTTG-TTCTTAC-TTCGGTA
1 CCCCTGATT-GTACATAC-GTG
* * *
16048002 CCCTTGATTGCACATACCTG
1 CCCCTGATTGTACATACGTG
*
16048022 CCCCTG-TTGTAC-TTCGATG
1 CCCCTGATTGTACATACG-TG
16048041 CCCCTGATTGTACATACGTG
1 CCCCTGATTGTACATACGTG
* * * * *
16048061 CCCCTGTTTGTACTTTCATA
1 CCCCTGATTGTACATACGTG
* * *
16048081 CTCCTGATTGCACATACATG
1 CCCCTGATTGTACATACGTG
* ** *
16048101 CCCCT-ATTGTACTTTGGTA
1 CCCCTGATTGTACATACGTG
*
16048120 CCCCTGATTGCACATACGTG
1 CCCCTGATTGTACATACGTG
* * * *
16048140 CCACTGTTTGTAC-TTCGATA
1 CCCCTGATTGTACATACG-TG
* *
16048160 CCCTTGATTGCACATACGTG
1 CCCCTGATTGTACATACGTG
* * * *
16048180 GCACT-ATTTGTACTTTA-GTA
1 CCCCTGA-TTGTAC-ATACGTG
* **
16048200 CCCGTGATTACACATACGTG
1 CCCCTGATTGTACATACGTG
* * *
16048220 -GCCT-ATTGTAC-TTCGGTA
1 CCCCTGATTGTACATAC-GTG
* *
16048238 CCCCTAATTGCACATACGTG
1 CCCCTGATTGTACATACGTG
* * *
16048258 CCCTTG-TTGTAC-TTCGATA
1 CCCCTGATTGTACATACG-TG
* *
16048277 CCCCTGATTGCACATACATG
1 CCCCTGATTGTACATACGTG
* * *
16048297 CCCTTG-TTGTAC-TTCAGTA
1 CCCCTGATTGTACATAC-GTG
** *
16048316 CCCCTG-TTGTAC-TTTGATA
1 CCCCTGATTGTACATACG-TG
* * *
16048335 CCCCTGATTGCACATACATT
1 CCCCTGATTGTACATACGTG
* * * *
16048355 CCCTTG-TTCTTAC-TTCGGTA
1 CCCCTGATT-GTACATAC-GTG
* * *
16048375 CCCTTGATTGCACATACCTG
1 CCCCTGATTGTACATACGTG
*
16048395 CCCCTG-TTGTAC-TTCGATG
1 CCCCTGATTGTACATACG-TG
16048414 CCCCTGATTGTACATACGTG
1 CCCCTGATTGTACATACGTG
* * * * *
16048434 CCCCTGTTTGTACTTTCATA
1 CCCCTGATTGTACATACGTG
* * *
16048454 CTCCTGATTGCACATACATG
1 CCCCTGATTGTACATACGTG
* ** *
16048474 CCCCT-ATTGTACTTTGGTA
1 CCCCTGATTGTACATACGTG
*
16048493 CCCCTGATTGCACATACGTG
1 CCCCTGATTGTACATACGTG
* * *
16048513 CCCCTGTTTGTAC-TTCGATA
1 CCCCTGATTGTACATACG-TG
* *
16048533 CCCTTGATTGCACATACGTG
1 CCCCTGATTGTACATACGTG
* * * *
16048553 GCACT-ATTTGTACTTTA-GTA
1 CCCCTGA-TTGTAC-ATACGTG
* **
16048573 CCCGTGATTACACATACGTG
1 CCCCTGATTGTACATACGTG
* * *
16048593 -GCCT-ATTGTAC-TTCGGTA
1 CCCCTGATTGTACATAC-GTG
*
16048611 CCCCTGATTGCACATACGTG
1 CCCCTGATTGTACATACGTG
* * *
16048631 CCCTTG-TTGTAC-TTCGATA
1 CCCCTGATTGTACATACG-TG
* * * *
16048650 CCTCTGATTGCACAAACATG
1 CCCCTGATTGTACATACGTG
* *
16048670 CCCCTG-TTGTAC-TTCAGTA
1 CCCCTGATTGTACATAC-GTG
* ** * *
16048689 CCCCTAATTACACATACATT
1 CCCCTGATTGTACATACGTG
** *
16048709 CCCCT-ATTGTAC-TTTGATA
1 CCCCTGATTGTACATACG-TG
* *
16048728 CCCCTGATTGCACATACATG
1 CCCCTGATTGTACATACGTG
* * * *
16048748 CCCTTG-TTCTTAC-TTCGGTA
1 CCCCTGATT-GTACATAC-GTG
*
16048768 CCCCTGATTGTACATATGTG
1 CCCCTGATTGTACATACGTG
*
16048788 CCCCT-ATTGTAC-TTCGGTG
1 CCCCTGATTGTACATAC-GTG
* *
16048807 CCCCTGATTGCACGTACGTG
1 CCCCTGATTGTACATACGTG
* * * * *
16048827 CCCCTGTTTGTACTTTCATA
1 CCCCTGATTGTACATACGTG
* * *
16048847 CTCCTAATTGCACATACGTG
1 CCCCTGATTGTACATACGTG
* * * ** *
16048867 TCCCTG-TTATACTTTGGTA
1 CCCCTGATTGTACATACGTG
*
16048886 CCCCTGATT-TCACATACGTA
1 CCCCTGATTGT-ACATACGTG
* *
16048906 CCCCTGTTTGTAC-TACGGTA
1 CCCCTGATTGTACATAC-GTG
* * * * *
16048926 CTCCTGAATGCACTTACATG
1 CCCCTGATTGTACATACGTG
16048946 CCCCTGATT
1 CCCCTGATT
16048955 ATATTCAGGT
Statistics
Matches: 1213, Mismatches: 447, Indels: 242
0.64 0.24 0.13
Matches are distributed among these distances:
17 4 0.00
18 50 0.04
19 355 0.29
20 724 0.60
21 80 0.07
ACGTcount: A:0.20, C:0.29, G:0.16, T:0.35
Consensus pattern (20 bp):
CCCCTGATTGTACATACGTG
Found at i:16050901 original size:20 final size:22
Alignment explanation
Indices: 16050871--16050910 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
16050861 GACCATTGTT
16050871 AGAGAACAGGAAATG-TGTTTC
1 AGAGAACAGGAAATGCTGTTTC
16050892 AGAG-ACAGGAAATGCTGTT
1 AGAGAACAGGAAATGCTGTT
16050911 GCAAAGTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.38, C:0.10, G:0.30, T:0.23
Consensus pattern (22 bp):
AGAGAACAGGAAATGCTGTTTC
Found at i:16061254 original size:45 final size:45
Alignment explanation
Indices: 16061191--16061280 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
16061181 ATTACCTAGA
16061191 TAGATTTGATAGAGATGAAGCTCAGAATGTGTGATCAAGGACTAC
1 TAGATTTGATAGAGATGAAGCTCAGAATGTGTGATCAAGGACTAC
16061236 TAGATTTGATAGAGATGAAGCTCAGAATGTGTGATCAAGGACTAC
1 TAGATTTGATAGAGATGAAGCTCAGAATGTGTGATCAAGGACTAC
16061281 ATGTTTTAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.36, C:0.11, G:0.27, T:0.27
Consensus pattern (45 bp):
TAGATTTGATAGAGATGAAGCTCAGAATGTGTGATCAAGGACTAC
Found at i:16070917 original size:21 final size:20
Alignment explanation
Indices: 16070870--16070920 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
16070860 GAGCAAGTAG
16070870 TGTTGAGTTTTGAAAACATAA
1 TGTTGAG-TTTGAAAACATAA
*
16070891 TATTGAGTTTGAAAACACT-A
1 TGTTGAGTTTGAAAACA-TAA
16070911 TCGTTGAGTT
1 T-GTTGAGTT
16070921 GAATTATCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 12 0.46
21 14 0.54
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (20 bp):
TGTTGAGTTTGAAAACATAA
Found at i:16081885 original size:27 final size:26
Alignment explanation
Indices: 16081867--16081918 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
16081857 ATATTAAGTC
16081867 CACACACTCAGTGCTATATAATCAACT
1 CACACACTCAGTGCTATAT-ATCAACT
* *
16081894 CGCACACTTAGTGCTATATAATCAA
1 CACACACTCAGTGCTATAT-ATCAA
16081919 ACTCGTGCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.37, C:0.27, G:0.10, T:0.27
Consensus pattern (26 bp):
CACACACTCAGTGCTATATATCAACT
Found at i:16081885 original size:29 final size:27
Alignment explanation
Indices: 16081867--16081983 Score: 97
Period size: 28 Copynumber: 4.6 Consensus size: 27
16081857 ATATTAAGTC
16081867 CACACACTCAGTGCTATATAATCAACT
1 CACACACTCAGTGCTATATAATCAACT
* *
16081894 CGCACACTTAGTGC--TAT-AT-AA-T
1 CACACACTCAGTGCTATATAATCAACT
*
16081916 CA-A-ACTC-GTGCTATATAATAAAACT
1 CACACACTCAGTGCTATATAAT-CAACT
* *
16081941 CGCACACTTAGTGCTATATAATCAAACT
1 CACACACTCAGTGCTATATAATC-AACT
* *
16081969 CGCACACTTAGTGCT
1 CACACACTCAGTGCT
16081984 GTACAATTTA
Statistics
Matches: 73, Mismatches: 7, Indels: 19
0.74 0.07 0.19
Matches are distributed among these distances:
19 4 0.05
20 3 0.04
21 4 0.05
22 4 0.05
23 2 0.03
24 4 0.05
25 5 0.07
26 1 0.01
27 15 0.21
28 31 0.42
ACGTcount: A:0.35, C:0.26, G:0.11, T:0.28
Consensus pattern (27 bp):
CACACACTCAGTGCTATATAATCAACT
Found at i:16081928 original size:19 final size:19
Alignment explanation
Indices: 16081904--16081942 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
16081894 CGCACACTTA
*
16081904 GTGCTATATAATCAAACTC
1 GTGCTATATAATAAAACTC
16081923 GTGCTATATAATAAAACTC
1 GTGCTATATAATAAAACTC
16081942 G
1 G
16081943 CACACTTAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (19 bp):
GTGCTATATAATAAAACTC
Found at i:16081948 original size:47 final size:46
Alignment explanation
Indices: 16081872--16081970 Score: 171
Period size: 47 Copynumber: 2.1 Consensus size: 46
16081862 AAGTCCACAC
*
16081872 ACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTATATAATCAA
1 ACTC-GTGCTATATAATAAACTCGCACACTTAGTGCTATATAATCAA
16081919 ACTCGTGCTATATAATAAAACTCGCACACTTAGTGCTATATAATCAA
1 ACTCGTGCTATATAAT-AAACTCGCACACTTAGTGCTATATAATCAA
16081966 ACTCG
1 ACTCG
16081971 CACACTTAGT
Statistics
Matches: 50, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
46 12 0.24
47 38 0.76
ACGTcount: A:0.36, C:0.23, G:0.11, T:0.29
Consensus pattern (46 bp):
ACTCGTGCTATATAATAAACTCGCACACTTAGTGCTATATAATCAA
Found at i:16081967 original size:28 final size:28
Alignment explanation
Indices: 16081923--16082008 Score: 118
Period size: 28 Copynumber: 3.0 Consensus size: 28
16081913 AATCAAACTC
16081923 GTGCTATATAATAAAACTCGCACACTTA
1 GTGCTATATAATAAAACTCGCACACTTA
*
16081951 GTGCTATATAATCAAACTCGCACACTTA
1 GTGCTATATAATAAAACTCGCACACTTA
* * * *
16081979 GTGCTGTACAATTTAAACCCGCACACTTA
1 GTGCTATATAA-TAAAACTCGCACACTTA
16082008 G
1 G
16082009 CGCCAATCTC
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
28 36 0.69
29 16 0.31
ACGTcount: A:0.35, C:0.24, G:0.13, T:0.28
Consensus pattern (28 bp):
GTGCTATATAATAAAACTCGCACACTTA
Found at i:16086711 original size:37 final size:37
Alignment explanation
Indices: 16086661--16086740 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
16086651 CTTATTACGA
* *
16086661 AGTCTTACCCGGACATAA-TCTCCACACGAAGTTATCG
1 AGTCTTACCCGGACAAAATTC-CCACACGAAGTCATCG
*
16086698 AGTCTTACCCGGACAAAATTCCCACACGCAGTCATCG
1 AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
*
16086735 GGTCTT
1 AGTCTT
16086741 TAGAGCCCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
Found at i:16086987 original size:47 final size:47
Alignment explanation
Indices: 16086859--16087306 Score: 645
Period size: 47 Copynumber: 9.6 Consensus size: 47
16086849 CCCTTCGGGA
** * *
16086859 CTTATCACATTTATACACT-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* * *
16086906 CTTATCTCAC--ATAC-TGCTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGC
*
16086950 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGC
*
16086997 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGC
* * *
16087044 TTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGT
1 CTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGC
* * *
16087091 CTTATCACACATACACACGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGC
*
16087138 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGC
* * *
16087185 CTTATCACACATACACCTATTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGC
*
16087232 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGC
*
16087279 CCTATTCACACATATACACT-TTCACATT
1 CTTA-TCACACATATACA-TGTTCACATT
16087307 TATTCAATTA
Statistics
Matches: 365, Mismatches: 30, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
43 1 0.00
44 33 0.09
45 4 0.01
46 3 0.01
47 303 0.83
48 20 0.05
49 1 0.00
ACGTcount: A:0.26, C:0.31, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:16087029 original size:25 final size:25
Alignment explanation
Indices: 16087000--16087077 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 25
16086990 ATTCGGCCTT
16087000 ATCACACATATACATGTTCACTTTC
1 ATCACACATATACATGTTCACTTTC
* *** *
16087025 ATCACA-TTGGCCA--TTCGGCTTT-
1 ATCACACATATACATGTTC-ACTTTC
16087047 ATCACACATATACATGTTCACTTTC
1 ATCACACATATACATGTTCACTTTC
16087072 ATCACA
1 ATCACA
16087078 TTGGCCATTC
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 9 0.24
23 7 0.18
24 7 0.18
25 15 0.39
ACGTcount: A:0.29, C:0.28, G:0.08, T:0.35
Consensus pattern (25 bp):
ATCACACATATACATGTTCACTTTC
Found at i:16087193 original size:22 final size:22
Alignment explanation
Indices: 16087166--16087240 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
16087156 GTTCACTTTC
16087166 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
*** * *
16087188 ATCACACATACACCTATTC-ACATT
1 AT--CACATTGGCC-ATTCGGCCTT
16087212 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
16087235 ATCACA
1 ATCACA
16087241 CATATACATG
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 12 0.32
23 10 0.26
24 10 0.26
25 6 0.16
ACGTcount: A:0.27, C:0.33, G:0.11, T:0.29
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:16091260 original size:40 final size:40
Alignment explanation
Indices: 16091203--16091315 Score: 190
Period size: 40 Copynumber: 2.8 Consensus size: 40
16091193 CCAGCATGAT
* *
16091203 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
16091243 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
16091283 TGCTCTTCGGGACTTAGCCCGGATATATCACTA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTA
16091316 TTCGGACTTA
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 67 1.00
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:16091365 original size:67 final size:68
Alignment explanation
Indices: 16091248--16091617 Score: 316
Period size: 79 Copynumber: 5.0 Consensus size: 68
16091238 ACGAATGCTC
* *
16091248 TTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
1 TTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCA
16091313 CTA
66 CTA
16091316 TTCGG-ACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCA
1 TTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCA
16091380 CTAGCACGAA
66 CT-------A
*
16091390 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGG-ACTTAGCCCGGATA
1 -----TTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGG---
*
16091454 TATCACTAGTACGAATGCTC
58 -AT-AC-A-T-C--A--CTA
* *
16091474 TTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGG-ACTTAGCCCGGATACATCA
1 TTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCA
16091538 CTAGCACGAA
66 CT-------A
*
16091548 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGG-ACTTAGCCCGGATA
1 -----TTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
16091612 TCATCA
61 -CATCA
16091618 ATCCTATGCC
Statistics
Matches: 258, Mismatches: 6, Indels: 64
0.79 0.02 0.20
Matches are distributed among these distances:
67 61 0.24
68 5 0.02
69 1 0.00
71 1 0.00
72 1 0.00
73 1 0.00
74 3 0.01
75 2 0.01
79 129 0.50
80 44 0.17
83 2 0.01
84 2 0.01
85 1 0.00
86 1 0.00
87 1 0.00
89 1 0.00
91 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (68 bp):
TTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCA
CTA
Found at i:16091370 original size:40 final size:39
Alignment explanation
Indices: 16091316--16091617 Score: 532
Period size: 40 Copynumber: 7.6 Consensus size: 39
16091306 TATATCACTA
16091316 TTCGGACTTAGCCCGGATACATCACTAGCACGAATGCTC
1 TTCGGACTTAGCCCGGATACATCACTAGCACGAATGCTC
16091355 TTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTC
1 TTCGG-ACTTAGCCCGGATACATCACTAGCACGAATGCTC
16091395 TTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTC
1 TTC-GGACTTAGCCCGGATACATCACTAGCACGAATGCTC
* *
16091435 TTCGGACTTAGCCCGGATATATCACTAGTACGAATGCTC
1 TTCGGACTTAGCCCGGATACATCACTAGCACGAATGCTC
*
16091474 TTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTC
1 TTC-GGACTTAGCCCGGATACATCACTAGCACGAATGCTC
16091514 TTCGGACTTAGCCCGGATACATCACTAGCACGAATGCTC
1 TTCGGACTTAGCCCGGATACATCACTAGCACGAATGCTC
16091553 TTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTC
1 TTC-GGACTTAGCCCGGATACATCACTAGCACGAATGCTC
16091593 TTCGGACTTAGCCCGGATATCATCA
1 TTCGGACTTAGCCCGGATA-CATCA
16091618 ATCCTATGCC
Statistics
Matches: 254, Mismatches: 4, Indels: 9
0.95 0.01 0.03
Matches are distributed among these distances:
39 96 0.38
40 156 0.61
41 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.24
Consensus pattern (39 bp):
TTCGGACTTAGCCCGGATACATCACTAGCACGAATGCTC
Found at i:16091468 original size:79 final size:79
Alignment explanation
Indices: 16091319--16091617 Score: 553
Period size: 79 Copynumber: 3.8 Consensus size: 79
16091309 ATCACTATTC
16091319 GGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAG
1 GGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGG-ACTTAGCCCGGATACATCACTAG
16091384 CACGAATGCTCTTCG
65 CACGAATGCTCTTCG
* *
16091399 GGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATATATCACTAGT
1 GGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATACATCACTAGC
16091464 ACGAATGCTCTTCG
66 ACGAATGCTCTTCG
*
16091478 GGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATACATCACTAGC
1 GGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATACATCACTAGC
16091543 ACGAATGCTCTTCG
66 ACGAATGCTCTTCG
16091557 GGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATATCATCA
1 GGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATA-CATCA
16091618 ATCCTATGCC
Statistics
Matches: 212, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
79 166 0.78
80 46 0.22
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (79 bp):
GGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATACATCACTAGC
ACGAATGCTCTTCG
Found at i:16091561 original size:119 final size:119
Alignment explanation
Indices: 16091316--16091617 Score: 536
Period size: 119 Copynumber: 2.5 Consensus size: 119
16091306 TATATCACTA
* *
16091316 TTCGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCAC
1 TTCGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCAC
16091381 TAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTC
66 TAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTC
* *
16091435 TTCGGACTTAGCCCGGATATATCACTAGTACGAATGCTCTTCGGGACTTAGCCCGGATATATCAC
1 TTCGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCAC
16091500 TAGCACGAATGCTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAATGCTC
66 TAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTC
16091553 TTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTC-GGACTTAGCCCGGATATCATC
1 TTC-GGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT-ATC
16091617 A
64 A
16091618 ATCCTATGCC
Statistics
Matches: 175, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
118 56 0.32
119 119 0.68
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.24
Consensus pattern (119 bp):
TTCGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCAC
TAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTC
Found at i:16093475 original size:37 final size:37
Alignment explanation
Indices: 16093425--16093504 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
16093415 CTTATTACGA
* *
16093425 AGTCTTACCCGGACATAA-TCTCCACACGAAGTTATCG
1 AGTCTTACCCGGACAAAATTC-CCACACGAAGTCATCG
*
16093462 AGTCTTACCCGGACAAAATTCCCACACGCAGTCATCG
1 AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
*
16093499 GGTCTT
1 AGTCTT
16093505 TAGAGCCCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
Found at i:16093755 original size:47 final size:47
Alignment explanation
Indices: 16093635--16094072 Score: 641
Period size: 47 Copynumber: 9.4 Consensus size: 47
16093625 TATCACATTT
* * *
16093635 ATACAC-T-TTCACATTCATCACATCGGCCATTAGGCCTTATCTCAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
16093680 ATAC-CATGCTCACATTCATCACATTGGCCACTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
16093726 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* * *
16093773 ATATACATGTTCACTTTCATCACATTGGCCATTCGGCTTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* * *
16093820 ATATACATGTTCACTTTCATCACATTGGCCATTCGGTCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
16093867 ATACACACGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
16093914 ATATACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
16093961 ATACACCTATTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* * *
16094008 ATATACATGTTCACTTTCATCACATTGGCCATTCGGCCCTATTCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTA-TCACAC
*
16094056 ATATACACT-TTCACATT
1 ATACACA-TGTTCACATT
16094073 TATTCAATTA
Statistics
Matches: 361, Mismatches: 27, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
44 1 0.00
45 5 0.01
46 37 0.10
47 297 0.82
48 20 0.06
49 1 0.00
ACGTcount: A:0.26, C:0.32, G:0.10, T:0.32
Consensus pattern (47 bp):
ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
Found at i:16093795 original size:25 final size:25
Alignment explanation
Indices: 16093766--16093843 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 25
16093756 ATTCGGCCTT
16093766 ATCACACATATACATGTTCACTTTC
1 ATCACACATATACATGTTCACTTTC
* *** *
16093791 ATCACA-TTGGCCA--TTCGGCTTT-
1 ATCACACATATACATGTTC-ACTTTC
16093813 ATCACACATATACATGTTCACTTTC
1 ATCACACATATACATGTTCACTTTC
16093838 ATCACA
1 ATCACA
16093844 TTGGCCATTC
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 9 0.24
23 7 0.18
24 7 0.18
25 15 0.39
ACGTcount: A:0.29, C:0.28, G:0.08, T:0.35
Consensus pattern (25 bp):
ATCACACATATACATGTTCACTTTC
Found at i:16093959 original size:22 final size:22
Alignment explanation
Indices: 16093932--16094006 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
16093922 GTTCACTTTC
16093932 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
*** * *
16093954 ATCACACATACACCTATTC-ACATT
1 AT--CACATTGGCC-ATTCGGCCTT
16093978 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
16094001 ATCACA
1 ATCACA
16094007 CATATACATG
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 12 0.32
23 10 0.26
24 10 0.26
25 6 0.16
ACGTcount: A:0.27, C:0.33, G:0.11, T:0.29
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:16101080 original size:14 final size:14
Alignment explanation
Indices: 16101061--16101088 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
16101051 TAAGGTTATA
16101061 TTTAATAATTCATT
1 TTTAATAATTCATT
16101075 TTTAATAATTCATT
1 TTTAATAATTCATT
16101089 AATAAATTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (14 bp):
TTTAATAATTCATT
Found at i:16103780 original size:20 final size:20
Alignment explanation
Indices: 16103738--16103780 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
16103728 TGGCAATTTT
*
16103738 TCTATCACTTCAATTTTTGC
1 TCTATCACTTCAATTTCTGC
*
16103758 TCTATCCACTTCTATTTCT-C
1 TCTAT-CACTTCAATTTCTGC
16103778 TCT
1 TCT
16103781 TCGATATCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.16, C:0.30, G:0.02, T:0.51
Consensus pattern (20 bp):
TCTATCACTTCAATTTCTGC
Found at i:16118302 original size:27 final size:27
Alignment explanation
Indices: 16118272--16118449 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
16118262 ATATTGAGCC
* * *
16118272 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
16118299 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
16118326 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
16118354 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
16118381 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
16118408 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
16118435 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
16118450 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:16118365 original size:55 final size:55
Alignment explanation
Indices: 16118272--16118449 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
16118262 ATATTGAGCC
* * *
16118272 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
16118326 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
16118381 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
16118435 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
16118450 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:16118411 original size:82 final size:81
Alignment explanation
Indices: 16118293--16118448 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
16118283 TGCTATACAA
* * *
16118293 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
16118358 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
16118375 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
16118439 CACTTAGTGC
65 CACTTAGTGC
16118449 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:16126365 original size:27 final size:27
Alignment explanation
Indices: 16126335--16126512 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
16126325 ATATTGAGCC
* * *
16126335 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
16126362 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
16126389 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
16126417 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
16126444 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
16126471 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
16126498 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
16126513 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:16126428 original size:55 final size:55
Alignment explanation
Indices: 16126335--16126512 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
16126325 ATATTGAGCC
* * *
16126335 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
16126389 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
16126444 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
16126498 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
16126513 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:16126474 original size:82 final size:81
Alignment explanation
Indices: 16126356--16126511 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
16126346 TGCTATACAA
* * *
16126356 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
16126421 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
16126438 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
16126502 CACTTAGTGC
65 CACTTAGTGC
16126512 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:16130052 original size:61 final size:58
Alignment explanation
Indices: 16129945--16130060 Score: 142
Period size: 61 Copynumber: 1.9 Consensus size: 58
16129935 ATCACTTTAA
* * *
16129945 TATTAAATAAATATAATACTTATCAAGATAAATATTAGATTAAATTTAATATTAAATC
1 TATTAAATAAATAGAATACTTATCAAGATAAATATTAAATTAAATTTAACATTAAATC
* * * *
16130003 TATTAAATTAATAGAATACTTTTCTATAAGATGAATATTAAATTTAATTTAACATTAA
1 TATTAAATAAATAGAATACTTATC---AAGATAAATATTAAATTAAATTTAACATTAA
16130061 GATAATCACT
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
58 21 0.44
61 27 0.56
ACGTcount: A:0.49, C:0.05, G:0.04, T:0.41
Consensus pattern (58 bp):
TATTAAATAAATAGAATACTTATCAAGATAAATATTAAATTAAATTTAACATTAAATC
Found at i:16133172 original size:40 final size:40
Alignment explanation
Indices: 16133142--16133391 Score: 385
Period size: 40 Copynumber: 6.3 Consensus size: 40
16133132 GGACTAAGAT
* * * *
16133142 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
16133182 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
16133222 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
*
16133262 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
16133302 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* * * * *
16133342 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
16133381 CCGAAGGCATT
1 CCGAAGGCATT
16133392 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 11, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
39 34 0.17
40 165 0.83
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
Found at i:16133226 original size:80 final size:80
Alignment explanation
Indices: 16133089--16133391 Score: 387
Period size: 80 Copynumber: 3.8 Consensus size: 80
16133079 TTGAATGCTG
* * * * * * * *
16133089 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGCTAAG-TCCCGAAGGCAT
* * *
16133152 TTGTGCGAGATACTAAA
64 TCGTGCGAGTTATTAAA
*
16133169 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGCTAAGTCCCGAAGGCATTC
16133234 GTGCGAGTTATTAAA
66 GTGCGAGTTATTAAA
* *
16133249 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGCTAAGTCCCGAAGGCATTC
*
16133314 GTGCGAGTTGTTAAA
66 GTGCGAGTTATTAAA
* * * * *
16133329 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGCTAAGTCCCGAAGGCATT
16133392 TGAACGAGGA
Statistics
Matches: 200, Mismatches: 21, Indels: 5
0.88 0.09 0.02
Matches are distributed among these distances:
79 34 0.17
80 160 0.80
81 6 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGCTAAGTCCCGAAGGCATTC
GTGCGAGTTATTAAA
Found at i:16133302 original size:120 final size:119
Alignment explanation
Indices: 16133089--16133391 Score: 401
Period size: 120 Copynumber: 2.5 Consensus size: 119
16133079 TTGAATGCTG
* * * * * * *
16133089 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTAATAAATCCGGGCTAAG-TCCCGAAGGCATT
*
16133153 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
64 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
16133209 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTC
* ** *
16133274 GTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
65 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * * * *
16133329 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATT
16133392 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 20, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
119 35 0.22
120 122 0.76
121 4 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:16141160 original size:40 final size:40
Alignment explanation
Indices: 16141130--16141379 Score: 385
Period size: 40 Copynumber: 6.3 Consensus size: 40
16141120 GGACTAAGAT
* * * *
16141130 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
16141170 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
16141210 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
*
16141250 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
16141290 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* * * * *
16141330 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
16141369 CCGAAGGCATT
1 CCGAAGGCATT
16141380 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 11, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
39 34 0.17
40 165 0.83
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
Found at i:16141214 original size:80 final size:80
Alignment explanation
Indices: 16141077--16141379 Score: 387
Period size: 80 Copynumber: 3.8 Consensus size: 80
16141067 TTGAATGCTG
* * * * * * * *
16141077 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGCTAAG-TCCCGAAGGCAT
* * *
16141140 TTGTGCGAGATACTAAA
64 TCGTGCGAGTTATTAAA
*
16141157 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGCTAAGTCCCGAAGGCATTC
16141222 GTGCGAGTTATTAAA
66 GTGCGAGTTATTAAA
* *
16141237 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGCTAAGTCCCGAAGGCATTC
*
16141302 GTGCGAGTTGTTAAA
66 GTGCGAGTTATTAAA
* * * * *
16141317 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGCTAAGTCCCGAAGGCATT
16141380 TGAACGAGGA
Statistics
Matches: 200, Mismatches: 21, Indels: 5
0.88 0.09 0.02
Matches are distributed among these distances:
79 34 0.17
80 160 0.80
81 6 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGCTAAGTCCCGAAGGCATTC
GTGCGAGTTATTAAA
Found at i:16141290 original size:120 final size:119
Alignment explanation
Indices: 16141077--16141379 Score: 401
Period size: 120 Copynumber: 2.5 Consensus size: 119
16141067 TTGAATGCTG
* * * * * * *
16141077 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTAATAAATCCGGGCTAAG-TCCCGAAGGCATT
*
16141141 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
64 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
16141197 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTC
* ** *
16141262 GTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
65 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * * * *
16141317 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATT
16141380 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 20, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
119 35 0.22
120 122 0.76
121 4 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:16147608 original size:27 final size:27
Alignment explanation
Indices: 16147577--16147821 Score: 217
Period size: 27 Copynumber: 9.1 Consensus size: 27
16147567 TTACACTATT
* *
16147577 ATGACTGAAATACCCCCATAAGGTAGA
1 ATGACTGAAATACCCCCATAGGGTAAA
* *
16147604 ATGACTAAAATACCCCCATAGGATAAA
1 ATGACTGAAATACCCCCATAGGGTAAA
** * *
16147631 ATGACCAAAATACCCCTACAGGGTAAA
1 ATGACTGAAATACCCCCATAGGGTAAA
** *
16147658 ATGACTGAAATACTGCTATAGGGTAAA
1 ATGACTGAAATACCCCCATAGGGTAAA
* *** *
16147685 ATGCCTGAAATACCTTTATAGGGTAGA
1 ATGACTGAAATACCCCCATAGGGTAAA
* * *
16147712 ATGA-TCGAAATACCTCTATAGAGTAAA
1 ATGACT-GAAATACCCCCATAGGGTAAA
*
16147739 ATGACCT-AAATACCCCCTTAGGGTAAA
1 ATGA-CTGAAATACCCCCATAGGGTAAA
*
16147766 ATGA-TCGAAATACCCCCATATGGTAAA
1 ATGACT-GAAATACCCCCATAGGGTAAA
** **
16147793 ATGACCAAAATACCATCATAGGGTAAA
1 ATGACTGAAATACCCCCATAGGGTAAA
16147820 AT
1 AT
16147822 CACTTTTATA
Statistics
Matches: 179, Mismatches: 33, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
25 1 0.01
26 1 0.01
27 176 0.98
29 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.16, T:0.22
Consensus pattern (27 bp):
ATGACTGAAATACCCCCATAGGGTAAA
Found at i:16147819 original size:81 final size:80
Alignment explanation
Indices: 16147577--16147821 Score: 255
Period size: 81 Copynumber: 3.0 Consensus size: 80
16147567 TTACACTATT
* * * *
16147577 ATGACTGAAATACCCCCATAAGGTAGAATGACTAAAATACCCCCATAGGATAAAATGACCAAAAT
1 ATGACTGAAATACCCCCTTAGGGTAAAATGACTGAAATACCCCCATAGG-TAAAATGACCAAAAT
* *
16147642 ACCCCTACAGGGTAAA
65 ACCTCTATAGGGTAAA
** * *** * * *
16147658 ATGACTGAAATA-CTGCTATAGGGTAAAATGCCTGAAATACCTTTATAGGGTAGAATGATCGAAA
1 ATGACTGAAATACCCCCT-TAGGGTAAAATGACTGAAATACCCCCATA-GGTAAAATGACCAAAA
*
16147722 TACCTCTATAGAGTAAA
64 TACCTCTATAGGGTAAA
16147739 ATGACCT-AAATACCCCCTTAGGGTAAAATGA-TCGAAATACCCCCATATGGTAAAATGACCAAA
1 ATGA-CTGAAATACCCCCTTAGGGTAAAATGACT-GAAATACCCCCATA-GGTAAAATGACCAAA
16147802 ATACCATC-ATAGGGTAAA
63 ATACC-TCTATAGGGTAAA
16147820 AT
1 AT
16147822 CACTTTTATA
Statistics
Matches: 131, Mismatches: 27, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
80 3 0.02
81 119 0.91
82 9 0.07
ACGTcount: A:0.42, C:0.20, G:0.16, T:0.22
Consensus pattern (80 bp):
ATGACTGAAATACCCCCTTAGGGTAAAATGACTGAAATACCCCCATAGGTAAAATGACCAAAATA
CCTCTATAGGGTAAA
Found at i:16147969 original size:26 final size:26
Alignment explanation
Indices: 16147940--16148016 Score: 118
Period size: 26 Copynumber: 3.0 Consensus size: 26
16147930 AGTATACTGA
*
16147940 TACTGGCAGCTTTGCTACGATATTGT
1 TACTGGCAGCTTTGCTACGATATTAT
* * *
16147966 TACTGCCAGCTTTGCTGCGATACTAT
1 TACTGGCAGCTTTGCTACGATATTAT
16147992 TACTGGCAGCTTTGCTACGATATTA
1 TACTGGCAGCTTTGCTACGATATTA
16148017 GTGTGTTGGC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (26 bp):
TACTGGCAGCTTTGCTACGATATTAT
Found at i:16148099 original size:5 final size:5
Alignment explanation
Indices: 16148089--16148115 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
16148079 GTTGGTTGGA
16148089 TGGGT TGGGT TGGGT TGGGT TGGGT TG
1 TGGGT TGGGT TGGGT TGGGT TGGGT TG
16148116 CATTATTGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.59, T:0.41
Consensus pattern (5 bp):
TGGGT
Found at i:16148163 original size:33 final size:33
Alignment explanation
Indices: 16148124--16148200 Score: 91
Period size: 33 Copynumber: 2.3 Consensus size: 33
16148114 TGCATTATTG
* * *
16148124 CACTGTACTGATACTGTATTGGGTTAAGGCCCA
1 CACTGTACTGATACTGAATAGGGCTAAGGCCCA
* *
16148157 CACTGTACTGTTACTGAATAGGGCTCAGGCCCA
1 CACTGTACTGATACTGAATAGGGCTAAGGCCCA
*
16148190 GACTGTTACTG
1 CACTG-TACTG
16148201 CATGTTGTAT
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
33 32 0.86
34 5 0.14
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (33 bp):
CACTGTACTGATACTGAATAGGGCTAAGGCCCA
Found at i:16151816 original size:28 final size:29
Alignment explanation
Indices: 16151784--16151840 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
16151774 TACTTTTAAA
* *
16151784 TAACAACTAATATCTCAA-ATTCATCAAT
1 TAACAACTAAAATCACAAGATTCATCAAT
* *
16151812 TAACATCTAAAATCACAAGTTTCATCAAT
1 TAACAACTAAAATCACAAGATTCATCAAT
16151841 GGAAATATTC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 15 0.62
29 9 0.38
ACGTcount: A:0.46, C:0.21, G:0.02, T:0.32
Consensus pattern (29 bp):
TAACAACTAAAATCACAAGATTCATCAAT
Found at i:16166095 original size:100 final size:100
Alignment explanation
Indices: 16165959--16166543 Score: 805
Period size: 100 Copynumber: 5.8 Consensus size: 100
16165949 TAACTCGTAA
** * * * * *
16165959 CTTTAAT-TTGTTTAACTGTGATGTCGAGGAAGCAAGATTCGA-TGTTGTAGCTTCAATCTGTTC
1 CTTTAATCTT-TTTAACTGCAATGTCGGGGAAGCAAGATTC-ACCGATGTGGCTTTAATCTGTTC
* * *
16166022 CACTACACCGCCTGGGAAGTAAGATTCACTATTGTAG
64 CACTGCACCGCCTGGGAAGTAAGATTCGCTGTTGTAG
* **
16166059 CATTAATCTTTTTAACTGCAATGTTAGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
** *
16166124 CTGCACCGCCAAGGAAATAAGATTCGCTGTTGTAG
66 CTGCACCGCCTGGGAAGTAAGATTCGCTGTTGTAG
* * *
16166159 CTTTAATCTTTTTAACTGCAATGTTGGGGAAGCAAGATTCACCGATGTTGCTTTAATCTGGTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
* *
16166224 CTGCACCGCCAGGGAAATAAGATTCGCTGTTGTAG
66 CTGCACCGCCTGGGAAGTAAGATTCGCTGTTGTAG
16166259 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
* * * * *
16166324 CTGCATCACCTGGGGAGTAAGATTCGTTGTTGTAA
66 CTGCACCGCCTGGGAAGTAAGATTCGCTGTTGTAG
16166359 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
* * * * * *
16166424 CTGCATCGCTTGGGGAGTAAGATTCACCGTTATAG
66 CTGCACCGCCTGGGAAGTAAGATTCGCTGTTGTAG
**
16166459 CTTTAATCTTTTTAACTGCAATGTCACGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
* * *
16166524 CTGCATCGTCGGGGAAGTAA
66 CTGCACCGCCTGGGAAGTAA
16166544 AACTGGTATT
Statistics
Matches: 439, Mismatches: 44, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
99 1 0.00
100 436 0.99
101 2 0.00
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (100 bp):
CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
CTGCACCGCCTGGGAAGTAAGATTCGCTGTTGTAG
Found at i:16166540 original size:50 final size:50
Alignment explanation
Indices: 16165981--16166540 Score: 382
Period size: 50 Copynumber: 11.2 Consensus size: 50
16165971 TAACTGTGAT
* * * * * *
16165981 GTCGAGGAAGCAAGATTCGA-TGTTGTAGCTTCAATCTGTTCCACTACACC
1 GTCGGGGAAGCAAGATTC-ACCGATGTAGCTTTAATCTGTTCCACTGCATC
* * * * * * **
16166031 GCCTGGGAAGTAAGATTCA-CTATTGTAGCATTAATCTTTTTAACTGCAAT-
1 GTCGGGGAAGCAAGATTCACCGA-TGTAGCTTTAATCTGTTCCACTGC-ATC
** * *
16166081 GTTAGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACC
1 GTCGGGGAAGCAAGATTCACCGATGTAGCTTTAATCTGTTCCACTGCATC
* ** ** * * * * **
16166131 GCCAAGGAAATAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAAT-
1 GTCGGGGAAGCAAGATTCACCGATGTAGCTTTAATCTGTTCCACTGC-ATC
* * * *
16166181 GTTGGGGAAGCAAGATTCACCGATGTTGCTTTAATCTGGTCCACTGCACC
1 GTCGGGGAAGCAAGATTCACCGATGTAGCTTTAATCTGTTCCACTGCATC
* * ** * * * * **
16166231 GCCAGGGAAATAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAAT-
1 GTCGGGGAAGCAAGATTCACCGATGTAGCTTTAATCTGTTCCACTGC-ATC
*
16166281 GTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCATC
1 GTCGGGGAAGCAAGATTCACCGATGTAGCTTTAATCTGTTCCACTGCATC
** * *** * * * **
16166331 ACCTGGGG-AGTAAGATTCGTTGTTGTAACTTTAATCTTTTTAACTGCAAT-
1 GTC-GGGGAAGCAAGATTCACCGATGTAGCTTTAATCTGTTCCACTGC-ATC
*
16166381 GTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCATC
1 GTCGGGGAAGCAAGATTCACCGATGTAGCTTTAATCTGTTCCACTGCATC
* * * * * **
16166431 GCTTGGGG-AGTAAGATTCACCGTTATAGCTTTAATCTTTTTAACTGCAAT-
1 G-TCGGGGAAGCAAGATTCACCGATGTAGCTTTAATCTGTTCCACTGC-ATC
** *
16166481 GTCACGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCATC
1 GTCGGGGAAGCAAGATTCACCGATGTAGCTTTAATCTGTTCCACTGCATC
16166531 GTCGGGGAAG
1 GTCGGGGAAG
16166541 TAAAACTGGT
Statistics
Matches: 372, Mismatches: 122, Indels: 32
0.71 0.23 0.06
Matches are distributed among these distances:
49 16 0.04
50 338 0.91
51 18 0.05
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (50 bp):
GTCGGGGAAGCAAGATTCACCGATGTAGCTTTAATCTGTTCCACTGCATC
Found at i:16167853 original size:8 final size:7
Alignment explanation
Indices: 16167833--16167890 Score: 66
Period size: 7 Copynumber: 8.0 Consensus size: 7
16167823 TTAGCCTCTC
16167833 CATTTTT
1 CATTTTT
16167840 -ACTTTTT
1 CA-TTTTT
16167847 CATTTTTT
1 CA-TTTTT
16167855 CATTTTT
1 CATTTTT
16167862 CA-TTTT
1 CATTTTT
16167868 CATTTTTT
1 CA-TTTTT
16167876 CATTTTT
1 CATTTTT
16167883 CATATTTT
1 CAT-TTTT
16167891 TTCTAACTTA
Statistics
Matches: 45, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
6 7 0.16
7 20 0.44
8 18 0.40
ACGTcount: A:0.16, C:0.14, G:0.00, T:0.71
Consensus pattern (7 bp):
CATTTTT
Found at i:16167867 original size:21 final size:21
Alignment explanation
Indices: 16167833--16167885 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
16167823 TTAGCCTCTC
*
16167833 CATTTTTACTTTTTCATTTTTT
1 CATTTTT-CATTTTCATTTTTT
16167855 CATTTTTCATTTTCATTTTTT
1 CATTTTTCATTTTCATTTTTT
16167876 CATTTTTCAT
1 CATTTTTCAT
16167886 ATTTTTTCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
21 23 0.77
22 7 0.23
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.70
Consensus pattern (21 bp):
CATTTTTCATTTTCATTTTTT
Found at i:16168759 original size:15 final size:14
Alignment explanation
Indices: 16168739--16168800 Score: 54
Period size: 14 Copynumber: 4.2 Consensus size: 14
16168729 TCTCCTTTTC
16168739 TTTTCTTTTTTCCTT
1 TTTTCTTTTTT-CTT
* *
16168754 TTTTCTTCTCTCTT
1 TTTTCTTTTTTCTT
*
16168768 TTTTC-ATTTTCATT
1 TTTTCTTTTTTC-TT
16168782 TTTTCTCTTTCTTCTT
1 TTTTCT-TTT-TTCTT
16168798 TTT
1 TTT
16168801 GTTTTGGATT
Statistics
Matches: 37, Mismatches: 6, Indels: 7
0.74 0.12 0.14
Matches are distributed among these distances:
13 3 0.08
14 15 0.41
15 9 0.24
16 7 0.19
17 3 0.08
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTTCTTTTTTCTT
Found at i:16168759 original size:20 final size:22
Alignment explanation
Indices: 16168734--16168777 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
16168724 TGGCCTCTCC
*
16168734 TTTTCTT-T-TCTTTTTTCCTT
1 TTTTCTTCTCTCTTTTTTCATT
16168754 TTTTCTTCTCTCTTTTTTCATT
1 TTTTCTTCTCTCTTTTTTCATT
16168776 TT
1 TT
16168778 CATTTTTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 7 0.33
21 1 0.05
22 13 0.62
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.77
Consensus pattern (22 bp):
TTTTCTTCTCTCTTTTTTCATT
Found at i:16168797 original size:7 final size:7
Alignment explanation
Indices: 16168739--16168800 Score: 54
Period size: 8 Copynumber: 8.4 Consensus size: 7
16168729 TCTCCTTTTC
16168739 TTTTCTT
1 TTTTCTT
16168746 TTTTCCTT
1 TTTT-CTT
16168754 TTTTCTT
1 TTTTCTT
* *
16168761 CTCTCTT
1 TTTTCTT
*
16168768 TTTTC-A
1 TTTTCTT
16168774 TTTTCATT
1 TTTTC-TT
16168782 TTTTCTCT
1 TTTTCT-T
16168790 TTCTTCTT
1 TT-TTCTT
16168798 TTT
1 TTT
16168801 GTTTTGGATT
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
6 5 0.11
7 17 0.39
8 18 0.41
9 4 0.09
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTCTT
Found at i:16168812 original size:7 final size:6
Alignment explanation
Indices: 16168797--16168856 Score: 59
Period size: 6 Copynumber: 9.7 Consensus size: 6
16168787 TCTTTCTTCT
** *
16168797 TTTTG- TTTTGGA TTTTGA TTTTGA TTTTTTCT TTTTGC TTTTGA TTTTGA
1 TTTTGA TTTT-GA TTTTGA TTTTGA --TTTTGA TTTTGA TTTTGA TTTTGA
16168847 TTTTGA TTTT
1 TTTTGA TTTT
16168857 TATTCCCCTT
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
5 4 0.09
6 34 0.74
7 4 0.09
8 4 0.09
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (6 bp):
TTTTGA
Found at i:16168831 original size:26 final size:26
Alignment explanation
Indices: 16168796--16168850 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
16168786 CTCTTTCTTC
*
16168796 TTTTTGTTTTGGATTTTGATTTTGAT
1 TTTTTCTTTTGGATTTTGATTTTGAT
* *
16168822 TTTTTCTTTTTGCTTTTGATTTTGAT
1 TTTTTCTTTTGGATTTTGATTTTGAT
16168848 TTT
1 TTT
16168851 GATTTTTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.09, C:0.04, G:0.15, T:0.73
Consensus pattern (26 bp):
TTTTTCTTTTGGATTTTGATTTTGAT
Found at i:16168843 original size:32 final size:32
Alignment explanation
Indices: 16168793--16168857 Score: 114
Period size: 32 Copynumber: 2.0 Consensus size: 32
16168783 TTTCTCTTTC
16168793 TTCTTTTTGTTTTGGATTTTGATTTTGATTTT
1 TTCTTTTTGTTTTGGATTTTGATTTTGATTTT
16168825 TTCTTTTTGCTTTT-GATTTTGATTTTGATTTT
1 TTCTTTTTG-TTTTGGATTTTGATTTTGATTTT
16168857 T
1 T
16168858 ATTCCCCTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 28 0.88
33 4 0.12
ACGTcount: A:0.09, C:0.05, G:0.14, T:0.72
Consensus pattern (32 bp):
TTCTTTTTGTTTTGGATTTTGATTTTGATTTT
Found at i:16172368 original size:34 final size:34
Alignment explanation
Indices: 16172325--16172391 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
16172315 TCTCACGAAG
16172325 GTATTCCGAAAGTGATCCACTATCCTGCACGGAT
1 GTATTCCGAAAGTGATCCACTATCCTGCACGGAT
16172359 GTATTCCGAAAGTGATCCACTATCCTGCACGGA
1 GTATTCCGAAAGTGATCCACTATCCTGCACGGA
16172392 GGTGAAAACC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (34 bp):
GTATTCCGAAAGTGATCCACTATCCTGCACGGAT
Found at i:16173605 original size:11 final size:11
Alignment explanation
Indices: 16173555--16173607 Score: 54
Period size: 11 Copynumber: 4.6 Consensus size: 11
16173545 ATAAAAGTTC
16173555 TAAAATA-AAT
1 TAAAATAGAAT
16173565 TAAATATATGAAT
1 TAAA-ATA-GAAT
*
16173578 TCAAAATAGACT
1 T-AAAATAGAAT
*
16173590 CAAAATAGAAT
1 TAAAATAGAAT
16173601 TAAAATA
1 TAAAATA
16173608 ACCATTAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
10 4 0.11
11 18 0.51
12 3 0.09
13 7 0.20
14 3 0.09
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.28
Consensus pattern (11 bp):
TAAAATAGAAT
Found at i:16181265 original size:8 final size:8
Alignment explanation
Indices: 16181252--16181294 Score: 54
Period size: 8 Copynumber: 5.6 Consensus size: 8
16181242 AGGAAAAGTT
16181252 GAGAGAAA
1 GAGAGAAA
16181260 GAGAGAAA
1 GAGAGAAA
16181268 G-GAG-AA
1 GAGAGAAA
*
16181274 GAGAGAAT
1 GAGAGAAA
*
16181282 GAGAGAAT
1 GAGAGAAA
16181290 GAGAG
1 GAGAG
16181295 TGTGAGGGAT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
6 3 0.09
7 6 0.19
8 23 0.72
ACGTcount: A:0.53, C:0.00, G:0.42, T:0.05
Consensus pattern (8 bp):
GAGAGAAA
Found at i:16181277 original size:14 final size:15
Alignment explanation
Indices: 16181252--16181294 Score: 52
Period size: 14 Copynumber: 2.8 Consensus size: 15
16181242 AGGAAAAGTT
16181252 GAGAGAAAGAGAGAAA
1 GAGAG-AAGAGAGAAA
*
16181268 G-GAGAAGAGAGAAT
1 GAGAGAAGAGAGAAA
16181282 GAGAGAATGAGAG
1 GAGAGAA-GAGAG
16181295 TGTGAGGGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
14 10 0.42
15 8 0.33
16 6 0.25
ACGTcount: A:0.53, C:0.00, G:0.42, T:0.05
Consensus pattern (15 bp):
GAGAGAAGAGAGAAA
Found at i:16192246 original size:18 final size:17
Alignment explanation
Indices: 16192223--16192256 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
16192213 GCGCGTCTTA
16192223 TTTTGTCCCTCATTTTTG
1 TTTTGT-CCTCATTTTTG
*
16192241 TTTTGTTCTCATTTTT
1 TTTTGTCCTCATTTTT
16192257 TCCCTTTTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.06, C:0.18, G:0.09, T:0.68
Consensus pattern (17 bp):
TTTTGTCCTCATTTTTG
Found at i:16192520 original size:46 final size:47
Alignment explanation
Indices: 16192470--16192590 Score: 128
Period size: 46 Copynumber: 2.6 Consensus size: 47
16192460 ATCATGTTTA
*
16192470 TTATTTCT-AATTTATCA-ATATTAT-TATTTTAAATTCATCATTAACT
1 TTATTT-TAAATTTATCATATA-TATCTATTTCAAATTCATCATTAACT
* *
16192516 TTATTTTAAATTTATCATGTATATCTATTTCAAATTTATCATTAA-T
1 TTATTTTAAATTTATCATATATATCTATTTCAAATTCATCATTAACT
* *
16192562 AT-TTTTAAATTTATTATATACTAT-TATTT
1 TTATTTTAAATTTATCATATA-TATCTATTT
16192591 TGGATTTATC
Statistics
Matches: 65, Mismatches: 6, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
45 22 0.34
46 23 0.35
47 20 0.31
ACGTcount: A:0.35, C:0.08, G:0.01, T:0.56
Consensus pattern (47 bp):
TTATTTTAAATTTATCATATATATCTATTTCAAATTCATCATTAACT
Found at i:16192523 original size:69 final size:69
Alignment explanation
Indices: 16192440--16192601 Score: 195
Period size: 69 Copynumber: 2.3 Consensus size: 69
16192430 AAGTGTATTG
* * * *
16192440 TATATTATTATTTTAGATTTATCATGTTTAT-TATTTCTAATTTATCAATATTATTATTTTAAAT
1 TATACTATTATTTTAGATTTATCATGTATATCTATTTCAAATTTATCAATAATA-T-TTTTAAAT
16192504 TCATCA
64 TCATCA
* *
16192510 T-TAACT-TTATTTTAAATTTATCATGTATATCTATTTCAAATTTATCATTAATATTTTTAAATT
1 TAT-ACTATTATTTTAGATTTATCATGTATATCTATTTCAAATTTATCAATAATATTTTTAAATT
* *
16192573 TATTA
65 CATCA
*
16192578 TATACTATTATTTTGGATTTATCA
1 TATACTATTATTTTAGATTTATCA
16192602 CATATGATTA
Statistics
Matches: 78, Mismatches: 10, Indels: 9
0.80 0.10 0.09
Matches are distributed among these distances:
68 16 0.21
69 40 0.51
70 22 0.28
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.56
Consensus pattern (69 bp):
TATACTATTATTTTAGATTTATCATGTATATCTATTTCAAATTTATCAATAATATTTTTAAATTC
ATCA
Found at i:16192550 original size:24 final size:23
Alignment explanation
Indices: 16192445--16192668 Score: 110
Period size: 23 Copynumber: 9.7 Consensus size: 23
16192435 TATTGTATAT
* * *
16192445 TATTATTTTAGATTTATCATGTT
1 TATTATTTCAAATTTATCATGTA
* *
16192468 TATTATTTCTAATTTATCA-ATA
1 TATTATTTCAAATTTATCATGTA
* *
16192490 TTATTATTTTAAATTCATCAT-TA
1 -TATTATTTCAAATTTATCATGTA
*
16192513 -ACTTTATTTTAAATTTATCATGTA
1 TA--TTATTTCAAATTTATCATGTA
16192537 TATCTATTTCAAATTTATCAT-TAA
1 TAT-TATTTCAAATTTATCATGT-A
* *
16192561 TATT-TTT-AAATTTATTATATA
1 TATTATTTCAAATTTATCATGTA
*** **
16192582 CTATTATTTTGGATTTATCACATA
1 -TATTATTTCAAATTTATCATGTA
**
16192606 TGATTA-TTCTAGAA-TTATCATCAA
1 T-ATTATTTC-A-AATTTATCATGTA
*
16192630 AATT-TTT-AAATTTTAT-ATGTA
1 TATTATTTCAAA-TTTATCATGTA
16192651 TTATTATTTCAAATTTAT
1 -TATTATTTCAAATTTAT
16192669 TATAATTAAT
Statistics
Matches: 155, Mismatches: 25, Indels: 42
0.70 0.11 0.19
Matches are distributed among these distances:
20 2 0.01
21 16 0.10
22 16 0.10
23 73 0.47
24 46 0.30
25 2 0.01
ACGTcount: A:0.34, C:0.08, G:0.04, T:0.54
Consensus pattern (23 bp):
TATTATTTCAAATTTATCATGTA
Found at i:16192785 original size:14 final size:14
Alignment explanation
Indices: 16192766--16192794 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
16192756 TATTGTTTTA
16192766 AACTTCATCCATAT
1 AACTTCATCCATAT
16192780 AACTTCATCCATAT
1 AACTTCATCCATAT
16192794 A
1 A
16192795 CATACTGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.28, G:0.00, T:0.34
Consensus pattern (14 bp):
AACTTCATCCATAT
Found at i:16199942 original size:308 final size:308
Alignment explanation
Indices: 16199384--16202153 Score: 5414
Period size: 308 Copynumber: 9.0 Consensus size: 308
16199374 TCCAACACAT
*
16199384 ATGTCACTGTAATATGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
16199449 TAAGTATTAAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTAAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
16199514 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
*
16199579 TCAATAAGCAAGTAACTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
16199644 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
16199692 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
16199757 TAAGTATTAAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTAAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
16199822 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
*
16199887 TCAACAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
16199952 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
*
16200000 ATGTCACTGTAATATGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
*
16200065 TAAGTATTAAATATAACATATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTAAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
16200130 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
16200195 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
16200260 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
16200308 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
*
16200373 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTAAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
16200438 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
*
16200503 TCAGTAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
*
16200568 TTTATGACATTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
16200616 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
*
16200681 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTAAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
16200746 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
16200811 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
16200876 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
16200924 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
16200989 TAAGTATTAAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTAAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
16201054 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
16201119 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
16201184 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
16201232 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
16201297 TAAGTATTAAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTAAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
16201362 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
16201427 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
16201492 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
16201540 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
*
16201605 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTAAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
*
16201670 TTCTCCTAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
16201735 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
16201800 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
16201848 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
* *
16201913 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAAAAGGAAATGGTATGATAATTT
66 TAAGTATTAAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
16201978 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
16202043 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
*
16202108 TTTATGACATTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAA
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAA
16202154 GCCAACGACC
Statistics
Matches: 2443, Mismatches: 19, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
308 2443 1.00
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (308 bp):
ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
TAAGTATTAAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
Found at i:16203412 original size:3 final size:3
Alignment explanation
Indices: 16203404--16203441 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
16203394 TTTTCATGGT
16203404 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
16203442 TATGCTTTCC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:16203944 original size:18 final size:18
Alignment explanation
Indices: 16203908--16203952 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
16203898 TTAATCATAT
*
16203908 TTAAATATAATTATTATTA
1 TTAAATAT-ATTATAATTA
16203927 TTAAATATATTATAATTA
1 TTAAATATATTATAATTA
16203945 --AAATATAT
1 TTAAATATAT
16203953 AATTTAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 8 0.32
18 9 0.36
19 8 0.32
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TTAAATATATTATAATTA
Found at i:16203959 original size:14 final size:15
Alignment explanation
Indices: 16203893--16203961 Score: 56
Period size: 15 Copynumber: 4.7 Consensus size: 15
16203883 TCAATAATAA
*
16203893 ATAATTTAATCATATT
1 ATAATTAAAT-ATATT
*
16203909 -TAAATATAAT-TATT
1 ATAATTA-AATATATT
*
16203923 ATTATTAAATATATT
1 ATAATTAAATATATT
16203938 ATAATTAAA-ATA-T
1 ATAATTAAATATATT
*
16203951 ATAATTTAATA
1 ATAATTAAATA
16203962 AAATTCTTAA
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
13 9 0.21
14 11 0.26
15 20 0.47
16 3 0.07
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (15 bp):
ATAATTAAATATATT
Found at i:16204079 original size:14 final size:15
Alignment explanation
Indices: 16204040--16204081 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
16204030 AATTAGCATA
*
16204040 ATTATTATTAAATAT
1 ATTATAATTAAATAT
16204055 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
16204069 A-TATAATTTAATA
1 ATTATAATTAAATA
16204082 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:16204192 original size:18 final size:17
Alignment explanation
Indices: 16204171--16204205 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16204161 TTATTATTAA
*
16204171 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
16204189 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
16204206 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:16204249 original size:59 final size:59
Alignment explanation
Indices: 16203946--16204251 Score: 206
Period size: 59 Copynumber: 5.1 Consensus size: 59
16203936 TTATAATTAA
*
16203946 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATTAATATTC-T-TATGAATTTACTCAAATCAT
* * * * * * * * *
16204007 AATATATGATACT-ATAAAA-T-AT-A-AATTAGCATAATTATTATTAAATATA-TTATAATTAA
1 AATATATAAT-TTAATAAAATTCTTAATAATTA--AT-ATTCTTA-TGAATTTACTCA-AATCAT
16204066 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATTAATATTC-T-TATGAATTTACTCAAATCAT
* * * * ** *
16204127 AATATATGATACTATAAAAGATAATT-TAACATAATTATTATT-AAAT-ATATTT--T--AATTA
1 AATATAT-A-A-TTTAATA-A-AATTCTTA-ATAATTAATATTCTTATGA-ATTTACTCAAATCA
*
16204185 A
59 T
16204186 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATGAATTTACTCAAATCAT
16204245 AATATAT
1 AATATAT
16204252 GATACTATAA
Statistics
Matches: 182, Mismatches: 35, Indels: 58
0.66 0.13 0.21
Matches are distributed among these distances:
54 15 0.08
55 9 0.05
56 6 0.03
57 6 0.03
58 7 0.04
59 51 0.28
60 8 0.04
61 37 0.20
62 8 0.04
63 12 0.07
64 5 0.03
65 3 0.02
66 15 0.08
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (59 bp):
AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATGAATTTACTCAAATCAT
Found at i:16204322 original size:59 final size:58
Alignment explanation
Indices: 16204127--16204313 Score: 179
Period size: 59 Copynumber: 3.2 Consensus size: 58
16204117 CTCAAATCAT
*
16204127 AATATATGATACTATAAAAGATAATTTAACATAATTATTATTAAATATATTTTAATTAA
1 AATATATGATACTATAAAAGATAATTTAA-ATAATTAATATTAAATATATTTTAATTAA
* * * ** * *
16204186 AATATAT-A-A-TTTAATA-A-AATTCTTAATAATTAATATT-CTTATGAATTTACTCAAATCAT
1 AATATATGATACTATAAAAGATAATT-TAAATAATTAATATTAAATAT--ATTT--T--AATTAA
16204245 AATATATGATACTATAAAAGATAATTTGAAATAATTAATATTAAATATATTTTAATTAA
1 AATATATGATACTATAAAAGATAATTT-AAATAATTAATATTAAATATATTTTAATTAA
16204304 AATATATGAT
1 AATATATGAT
16204314 TTAATAAAAT
Statistics
Matches: 99, Mismatches: 15, Indels: 28
0.70 0.11 0.20
Matches are distributed among these distances:
53 3 0.03
54 15 0.15
55 7 0.07
56 5 0.05
57 2 0.02
58 1 0.01
59 32 0.32
60 1 0.01
61 2 0.02
62 5 0.05
63 6 0.06
64 17 0.17
65 3 0.03
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (58 bp):
AATATATGATACTATAAAAGATAATTTAAATAATTAATATTAAATATATTTTAATTAA
Found at i:16204335 original size:118 final size:119
Alignment explanation
Indices: 16203920--16204324 Score: 697
Period size: 120 Copynumber: 3.4 Consensus size: 119
16203910 AAATATAATT
*
16203920 ATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATATTCT
1 ATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCT
* * *
16203985 TATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATTAGCATA
66 TATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTA-AATA
16204040 ATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCT
1 ATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCT
16204105 TATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTAACATA
66 TATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTAA-ATA
*
16204160 ATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTC-
1 ATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCT
16204224 T-TATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTGAAATA
66 TATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTT-AAATA
* * *
16204278 ATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 ATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
16204325 TAAAATAATT
Statistics
Matches: 276, Mismatches: 7, Indels: 6
0.96 0.02 0.02
Matches are distributed among these distances:
118 95 0.34
119 3 0.01
120 178 0.64
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (119 bp):
ATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCT
TATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTAAATA
Found at i:16204432 original size:88 final size:90
Alignment explanation
Indices: 16204331--16204544 Score: 290
Period size: 88 Copynumber: 2.4 Consensus size: 90
16204321 AATTTAAAAT
* * * * * *
16204331 AATTA-TAACTAATAGATTTTCTTATATGAATTTGTATAATTTAAAATAATTATTATTACATATA
1 AATTATTAA-TAATAAATTTTCTTATATGAATTTATACAATTTAAAAAAATTAATATTAAATATA
16204395 ATTTAAT-A-ATATATAATTTCATAA
65 ATTTAATAAGATATATAATTTCATAA
* *
16204419 AATTATTTATAATAAATTTTCTTATATGAATTTATACAATTTAAAAAAATTAATATTAAATTTAA
1 AATTATTAATAATAAATTTTCTTATATGAATTTATACAATTTAAAAAAATTAATATTAAATATAA
16204484 TTTAATAATGATATATAATTTCATAA
66 TTTAATAA-GATATATAATTTCATAA
* *
16204510 AATTCTTAATAATAAAATGTTCTTATATGAATTTA
1 AATTATTAATAAT-AAATTTTCTTATATGAATTTA
16204545 CTAAAATCAA
Statistics
Matches: 110, Mismatches: 11, Indels: 6
0.87 0.09 0.05
Matches are distributed among these distances:
88 60 0.55
89 3 0.03
91 27 0.25
92 20 0.18
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.46
Consensus pattern (90 bp):
AATTATTAATAATAAATTTTCTTATATGAATTTATACAATTTAAAAAAATTAATATTAAATATAA
TTTAATAAGATATATAATTTCATAA
Found at i:16204468 original size:47 final size:46
Alignment explanation
Indices: 16204306--16204544 Score: 149
Period size: 47 Copynumber: 5.3 Consensus size: 46
16204296 TTAATTAAAA
* * * *
16204306 TATATG-ATTTAATAAAATTTAAAATAATTATAACTAATAGATTTTCT
1 TATATGAATTT-ATATAATTTAAAAAAATTATTA-TAATAAATTTTCT
* * * * * **
16204353 TATATGAATTTGTATAATTTAAAATAATTATTATTACATATAAT-T
1 TATATGAATTTATATAATTTAAAAAAATTATTATAATAAATTTTCT
* *
16204398 TA-AT-AA--TATATAATTTCATAAAATTATTTATAATAAATTTTCT
1 TATATGAATTTATATAATTTAAAAAAATTA-TTATAATAAATTTTCT
* *
16204441 TATATGAATTTATACAATTTAAAAAAATTA--ATATTAAATTTAAT-T
1 TATATGAATTTATATAATTTAAAAAAATTATTATAATAAATTT--TCT
* * * * *
16204486 TA-AT-AATGATATATAATTTCATAAAATTCTTAATAATAAAATGTTCT
1 TATATGAAT-TTATATAATTTAAAAAAATTATT-ATAAT-AAATTTTCT
16204533 TATATGAATTTA
1 TATATGAATTTA
16204545 CTAAAATCAA
Statistics
Matches: 146, Mismatches: 29, Indels: 33
0.70 0.14 0.16
Matches are distributed among these distances:
41 16 0.11
42 9 0.06
43 8 0.05
44 32 0.22
45 8 0.05
46 8 0.05
47 49 0.34
48 13 0.09
49 3 0.02
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (46 bp):
TATATGAATTTATATAATTTAAAAAAATTATTATAATAAATTTTCT
Found at i:16204504 original size:44 final size:43
Alignment explanation
Indices: 16204365--16204513 Score: 108
Period size: 44 Copynumber: 3.4 Consensus size: 43
16204355 TATGAATTTG
* * * *
16204365 TATAATTTAAAATAATTATTATTACATATAATTTAAT-A-ATA
1 TATAATTTAAAAAAATTAATATTAAATTTAATTTAATAATATA
* * * *
16204406 TATAATTTCATAAAATTATTTATAATAAATTT--TCTTATATGAATTTA
1 TATAATTT-A-AAAA-AATTAATATTAAATTTAAT-TTA-AT-AATATA
*
16204453 TACAATTTAAAAAAATTAATATTAAATTTAATTTAATAATGATA
1 TATAATTTAAAAAAATTAATATTAAATTTAATTTAATAAT-ATA
* *
16204497 TATAATTTCATAAAATT
1 TATAATTTAAAAAAATT
16204514 CTTAATAATA
Statistics
Matches: 81, Mismatches: 16, Indels: 19
0.70 0.14 0.16
Matches are distributed among these distances:
41 8 0.10
42 2 0.02
43 9 0.11
44 43 0.53
45 7 0.09
46 3 0.04
47 9 0.11
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.46
Consensus pattern (43 bp):
TATAATTTAAAAAAATTAATATTAAATTTAATTTAATAATATA
Found at i:16207573 original size:33 final size:33
Alignment explanation
Indices: 16207536--16207601 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
16207526 ATCATAAAGC
16207536 ATGTATAATTGACCTAAAATTAATTGTTGGTAT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTAT
16207569 ATGTATAATTGACCTAAAATTAATTGTTGGTAT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTAT
16207602 TTGTTAGATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.36, C:0.06, G:0.15, T:0.42
Consensus pattern (33 bp):
ATGTATAATTGACCTAAAATTAATTGTTGGTAT
Found at i:16207901 original size:37 final size:37
Alignment explanation
Indices: 16207816--16207902 Score: 147
Period size: 37 Copynumber: 2.4 Consensus size: 37
16207806 GTATAAATAT
* * *
16207816 ATTGATTAGTTCATTAAAGCATGTTCAAAGTTTTAAC
1 ATTGATTAGTTTAATAAAGCATGTTCAAAGTTTGAAC
16207853 ATTGATTAGTTTAATAAAGCATGTTCAAAGTTTGAAC
1 ATTGATTAGTTTAATAAAGCATGTTCAAAGTTTGAAC
16207890 ATTGATTAGTTTA
1 ATTGATTAGTTTA
16207903 TTTATTTATG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.36, C:0.08, G:0.15, T:0.41
Consensus pattern (37 bp):
ATTGATTAGTTTAATAAAGCATGTTCAAAGTTTGAAC
Found at i:16209107 original size:22 final size:23
Alignment explanation
Indices: 16209069--16209130 Score: 101
Period size: 22 Copynumber: 2.7 Consensus size: 23
16209059 TCTACTGACT
16209069 AACAAATCAAGAACAATTTCCAG
1 AACAAATCAAGAACAATTTCCAG
16209092 CAAC-AATCAA-AACAATTTCCAG
1 -AACAAATCAAGAACAATTTCCAG
16209114 AACAAATCAAGAACAAT
1 AACAAATCAAGAACAAT
16209131 ATCAAAACAA
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
21 3 0.08
22 18 0.50
23 12 0.33
24 3 0.08
ACGTcount: A:0.55, C:0.23, G:0.06, T:0.16
Consensus pattern (23 bp):
AACAAATCAAGAACAATTTCCAG
Found at i:16209139 original size:22 final size:23
Alignment explanation
Indices: 16209069--16209142 Score: 91
Period size: 22 Copynumber: 3.3 Consensus size: 23
16209059 TCTACTGACT
*
16209069 AACAAATCAAGAACAATTTCCAGC
1 AACAAATCAAGAACAATTTCCA-A
*
16209093 AAC-AATCAA-AACAATTTCCAG
1 AACAAATCAAGAACAATTTCCAA
*
16209114 AACAAATCAAGAACAATAT-CAA
1 AACAAATCAAGAACAATTTCCAA
16209136 AACAAAT
1 AACAAAT
16209143 GCAACAATTT
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
21 3 0.07
22 26 0.58
23 13 0.29
24 3 0.07
ACGTcount: A:0.57, C:0.22, G:0.05, T:0.16
Consensus pattern (23 bp):
AACAAATCAAGAACAATTTCCAA
Found at i:16209186 original size:61 final size:61
Alignment explanation
Indices: 16209114--16209250 Score: 220
Period size: 61 Copynumber: 2.2 Consensus size: 61
16209104 CAATTTCCAG
* * *
16209114 AACAAATCAAGAACAATATCAAAACAAATGCAACAATTTCCAGTTTCATCTTCTACTAACT
1 AACAAATCAAGAACAATATCAAAACAAATACAACAACTTCCAATTTCATCTTCTACTAACT
* *
16209175 AACAAATCAAGAACAATATCAAAACAACTACAACAACTTCCAATTTCATCTTCTACTCACT
1 AACAAATCAAGAACAATATCAAAACAAATACAACAACTTCCAATTTCATCTTCTACTAACT
*
16209236 AACAAATCAATAACA
1 AACAAATCAAGAACA
16209251 TTTTCCAGCA
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
61 70 1.00
ACGTcount: A:0.48, C:0.25, G:0.03, T:0.24
Consensus pattern (61 bp):
AACAAATCAAGAACAATATCAAAACAAATACAACAACTTCCAATTTCATCTTCTACTAACT
Found at i:16209943 original size:5 final size:5
Alignment explanation
Indices: 16209933--16209964 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
16209923 TGAGATAAAC
16209933 ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA AT
1 ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA AT
16209965 GATTGTAGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.41, C:0.19, G:0.00, T:0.41
Consensus pattern (5 bp):
ATCTA
Found at i:16220714 original size:39 final size:39
Alignment explanation
Indices: 16220660--16220739 Score: 142
Period size: 39 Copynumber: 2.1 Consensus size: 39
16220650 CCACAGAAAC
*
16220660 TGTATAGGTAAATATTGTGAAAATAAAATCTTAACAAAT
1 TGTATAGGCAAATATTGTGAAAATAAAATCTTAACAAAT
*
16220699 TGTATAGGCAAATATTGTGAAAATAAAATCTTAGCAAAT
1 TGTATAGGCAAATATTGTGAAAATAAAATCTTAACAAAT
16220738 TG
1 TG
16220740 GTGATGGAAG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.46, C:0.06, G:0.15, T:0.33
Consensus pattern (39 bp):
TGTATAGGCAAATATTGTGAAAATAAAATCTTAACAAAT
Found at i:16223559 original size:24 final size:24
Alignment explanation
Indices: 16223530--16223580 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
16223520 CATCACCCAC
16223530 TATTTTAGCTAAATTAACATCTGT
1 TATTTTAGCTAAATTAACATCTGT
16223554 TATTTTAGCTAAATTAACATCTGT
1 TATTTTAGCTAAATTAACATCTGT
16223578 TAT
1 TAT
16223581 ACATCCTTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.33, C:0.12, G:0.08, T:0.47
Consensus pattern (24 bp):
TATTTTAGCTAAATTAACATCTGT
Found at i:16226089 original size:25 final size:25
Alignment explanation
Indices: 16226061--16226110 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
16226051 CTTATGCAAT
*
16226061 ATGCATATTCAACTATGATTTCATC
1 ATGCATATTCAACTATCATTTCATC
16226086 ATGCATATTCAACTATCATTTCATC
1 ATGCATATTCAACTATCATTTCATC
16226111 TTCCATCATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.32, C:0.22, G:0.06, T:0.40
Consensus pattern (25 bp):
ATGCATATTCAACTATCATTTCATC
Found at i:16226740 original size:30 final size:30
Alignment explanation
Indices: 16226706--16226932 Score: 162
Period size: 30 Copynumber: 7.7 Consensus size: 30
16226696 AGCCAAAGCT
* * *
16226706 ATCCCTTTTCATAATTTGATGGTTGTCACC
1 ATCCCTTTTCATAATTCGATGGTCGTAACC
** *
16226736 ATCCCTTTTCATTGTTCGATGGTCGTTACC
1 ATCCCTTTTCATAATTCGATGGTCGTAACC
* * * * *
16226766 ATCCCTTTTCATAATTTGATAGCCGAAACT
1 ATCCCTTTTCATAATTCGATGGTCGTAACC
* *
16226796 ATCCCTTTTCATAGA-TCGCTAG-C-TGAAGCC
1 ATCCCTTTTCATA-ATTCGATGGTCGT-AA-CC
* * *
16226826 ATCTCTTTTCATAGTTCGATAGTCG-AAGCC
1 ATCCCTTTTCATAATTCGATGGTCGTAA-CC
* * *
16226856 ATCCCTTTTCATAGTTCAATGGTCGTCACC
1 ATCCCTTTTCATAATTCGATGGTCGTAACC
* * * *
16226886 AT-CCTTTTCAT-TTTTGATGGTCGTCACA
1 ATCCCTTTTCATAATTCGATGGTCGTAACC
16226914 ATCCCTTTTCATAA-TCGAT
1 ATCCCTTTTCATAATTCGAT
16226933 AGCCGAAGCT
Statistics
Matches: 158, Mismatches: 30, Indels: 19
0.76 0.14 0.09
Matches are distributed among these distances:
28 15 0.09
29 25 0.16
30 115 0.73
31 3 0.02
ACGTcount: A:0.22, C:0.26, G:0.14, T:0.39
Consensus pattern (30 bp):
ATCCCTTTTCATAATTCGATGGTCGTAACC
Found at i:16226770 original size:60 final size:60
Alignment explanation
Indices: 16226706--16226926 Score: 200
Period size: 60 Copynumber: 3.7 Consensus size: 60
16226696 AGCCAAAGCT
* * * * *
16226706 ATCCCTTTTCATAATTTGATGGTTGTCACCATCCCTTTTCATTGTTCGATGGTCGTTACC
1 ATCCCTTTTCATAATTTGATAGTCGTAACCATCCCTTTTCATAGTTCGATGGTCGTAACC
* * * * * *
16226766 ATCCCTTTTCATAATTTGATAGCCGAAACTATCCCTTTTCATAGATCGCTAG-C-TGAAGCC
1 ATCCCTTTTCATAATTTGATAGTCGTAACCATCCCTTTTCATAGTTCGATGGTCGT-AA-CC
* * * * *
16226826 ATCTCTTTTCATAGTTCGATAGTCG-AAGCCATCCCTTTTCATAGTTCAATGGTCGTCACC
1 ATCCCTTTTCATAATTTGATAGTCGTAA-CCATCCCTTTTCATAGTTCGATGGTCGTAACC
* * * *
16226886 AT-CCTTTTCAT-TTTTGATGGTCGTCACAATCCCTTTTCATA
1 ATCCCTTTTCATAATTTGATAGTCGTAACCATCCCTTTTCATA
16226927 ATCGATAGCC
Statistics
Matches: 128, Mismatches: 27, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
58 24 0.19
59 13 0.10
60 88 0.69
61 2 0.02
62 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.14, T:0.39
Consensus pattern (60 bp):
ATCCCTTTTCATAATTTGATAGTCGTAACCATCCCTTTTCATAGTTCGATGGTCGTAACC
Found at i:16226770 original size:90 final size:90
Alignment explanation
Indices: 16226676--16226874 Score: 217
Period size: 90 Copynumber: 2.2 Consensus size: 90
16226666 AATCGAAGTT
* * * *
16226676 ATCCCTTTTCATAGTTCAACAGCC-AAAGCTATCCCTTTTCATA-ATTTGATGGTTGTCA-CCAT
1 ATCCCTTTTCATAGTTCAACAGCCGAAA-CTATCCCTTTTCATAGA-TCGATAGCTG-AAGCCAT
* * *
16226738 CCCTTTTCATTGTTCGATGGTCGTTA-CC
63 CCCTTTTCATAGTTCGATAGTCG-AAGCC
* ** * * *
16226766 ATCCCTTTTCATAATTTGATAGCCGAAACTATCCCTTTTCATAGATCGCTAGCTGAAGCCATCTC
1 ATCCCTTTTCATAGTTCAACAGCCGAAACTATCCCTTTTCATAGATCGATAGCTGAAGCCATCCC
16226831 TTTTCATAGTTCGATAGTCGAAGCC
66 TTTTCATAGTTCGATAGTCGAAGCC
16226856 ATCCCTTTTCATAGTTCAA
1 ATCCCTTTTCATAGTTCAA
16226875 TGGTCGTCAC
Statistics
Matches: 89, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
89 2 0.02
90 83 0.93
91 4 0.04
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.37
Consensus pattern (90 bp):
ATCCCTTTTCATAGTTCAACAGCCGAAACTATCCCTTTTCATAGATCGATAGCTGAAGCCATCCC
TTTTCATAGTTCGATAGTCGAAGCC
Found at i:16226946 original size:29 final size:29
Alignment explanation
Indices: 16226914--16226983 Score: 104
Period size: 29 Copynumber: 2.4 Consensus size: 29
16226904 GGTCGTCACA
*
16226914 ATCCCTTTTCATAATCGATAGCCGAAGCT
1 ATCCCTTTTCATAATCGATAGCCAAAGCT
* * *
16226943 ATCCCTTTCCGTATTCGATAGCCAAAGCT
1 ATCCCTTTTCATAATCGATAGCCAAAGCT
16226972 ATCCCTTTTCAT
1 ATCCCTTTTCAT
16226984 TCGTCGATGA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.24, C:0.30, G:0.11, T:0.34
Consensus pattern (29 bp):
ATCCCTTTTCATAATCGATAGCCAAAGCT
Found at i:16227266 original size:17 final size:17
Alignment explanation
Indices: 16227244--16227276 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
16227234 AATTTAGCCC
16227244 AAAAATTCAT-ATTTTGG
1 AAAAATT-ATCATTTTGG
16227261 AAAAATTATCATTTTG
1 AAAAATTATCATTTTG
16227277 CCCCTATACT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.42, C:0.06, G:0.09, T:0.42
Consensus pattern (17 bp):
AAAAATTATCATTTTGG
Found at i:16229683 original size:13 final size:13
Alignment explanation
Indices: 16229667--16229697 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
16229657 TCTAAATATT
16229667 ATTAATGATAGAA
1 ATTAATGATAGAA
16229680 ATTAATGATAGAA
1 ATTAATGATAGAA
16229693 ATTAA
1 ATTAA
16229698 ATAACTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.13, T:0.32
Consensus pattern (13 bp):
ATTAATGATAGAA
Found at i:16247511 original size:17 final size:17
Alignment explanation
Indices: 16247472--16247513 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
16247462 CTGTCACGAG
* *
16247472 AATTATATTAATTATTA
1 AATTAAATTAATTATGA
16247489 AATTAAATTAATT-TGA
1 AATTAAATTAATTATGA
16247505 AAGTTAAAT
1 AA-TTAAAT
16247514 AATAAACACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (17 bp):
AATTAAATTAATTATGA
Found at i:16254251 original size:29 final size:30
Alignment explanation
Indices: 16254208--16254285 Score: 86
Period size: 31 Copynumber: 2.6 Consensus size: 30
16254198 AAGTTATAGA
* *
16254208 TTTAGTCTCTATACTTTT-ATTTGATCAAT
1 TTTAGTCCCTATACTTTTAAATTGATCAAT
* * *
16254237 TTTAGTCCCTGTACTTTTCAAATTGGTCACT
1 TTTAGTCCCTATACTTTT-AAATTGATCAAT
*
16254268 TTTAGTCCCTATATTTTT
1 TTTAGTCCCTATACTTTT
16254286 CAAAATTTGA
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
29 16 0.40
31 24 0.60
ACGTcount: A:0.21, C:0.18, G:0.09, T:0.53
Consensus pattern (30 bp):
TTTAGTCCCTATACTTTTAAATTGATCAAT
Found at i:16254302 original size:31 final size:31
Alignment explanation
Indices: 16254208--16254304 Score: 83
Period size: 31 Copynumber: 3.2 Consensus size: 31
16254198 AAGTTATAGA
* * * *
16254208 TTTAGTCTCTATACTTTT--ATTTGATCAAT
1 TTTAGTCCCTATACTTTTCAAATTGGTAAAT
* * *
16254237 TTTAGTCCCTGTACTTTTCAAATTGGTCACT
1 TTTAGTCCCTATACTTTTCAAATTGGTAAAT
* *
16254268 TTTAGTCCCTATATTTTTCAAAATTTG-AAAT
1 TTTAGTCCCTATACTTTTC-AAATTGGTAAAT
16254299 TTTAGT
1 TTTAGT
16254305 ACTAACCTAA
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
29 16 0.29
31 33 0.60
32 6 0.11
ACGTcount: A:0.25, C:0.15, G:0.09, T:0.51
Consensus pattern (31 bp):
TTTAGTCCCTATACTTTTCAAATTGGTAAAT
Found at i:16266012 original size:43 final size:43
Alignment explanation
Indices: 16265951--16266140 Score: 204
Period size: 43 Copynumber: 4.4 Consensus size: 43
16265941 TATACTTCAT
* * * *
16265951 TTTATTCGATGATGCACTATAGGTGCCAGTATAATTGCTTCGG
1 TTTATTCGATGATGCACTACAGGTGCCAGTATATTTCCTTCGA
* * * *
16265994 TTTATTTGATGATGCACTACATGTGCTAGTATATTTCCTTTGA
1 TTTATTCGATGATGCACTACAGGTGCCAGTATATTTCCTTCGA
* * *
16266037 TTTA-TCTGATGATGCACTA-TGTGTGCTAGTATATTTCCTTTGA
1 TTTATTC-GATGATGCACTACAG-GTGCCAGTATATTTCCTTCGA
* * *
16266080 TTTATTCGATGATGCACTACATGTTCCAGTATATTTCCTTCGG
1 TTTATTCGATGATGCACTACAGGTGCCAGTATATTTCCTTCGA
* *
16266123 TTTATCCAATGATGCACT
1 TTTATTCGATGATGCACT
16266141 GAGGTGATAG
Statistics
Matches: 124, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
42 1 0.01
43 121 0.98
44 2 0.02
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.43
Consensus pattern (43 bp):
TTTATTCGATGATGCACTACAGGTGCCAGTATATTTCCTTCGA
Found at i:16266096 original size:86 final size:86
Alignment explanation
Indices: 16265951--16266140 Score: 247
Period size: 86 Copynumber: 2.2 Consensus size: 86
16265941 TATACTTCAT
* * * *
16265951 TTTATTCGATGATGCACTATAGGTGCCAGTATAATTGCTTCGGTTTATTTGATGATGCACTACAT
1 TTTATCCGATGATGCACTATAGGTGCCAGTATAATTCCTTCGATTTATTCGATGATGCACTACAT
* *
16266016 GTGCTAGTATATTTCCTTTGA
66 GTGCCAGTATATTTCCTTCGA
* * * *
16266037 TTTATCTGATGATGCACTAT-GTGTGCTAGTATATTTCCTTTGATTTATTCGATGATGCACTACA
1 TTTATCCGATGATGCACTATAG-GTGCCAGTATAATTCCTTCGATTTATTCGATGATGCACTACA
* *
16266101 TGTTCCAGTATATTTCCTTCGG
65 TGTGCCAGTATATTTCCTTCGA
*
16266123 TTTATCCAATGATGCACT
1 TTTATCCGATGATGCACT
16266141 GAGGTGATAG
Statistics
Matches: 89, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
85 1 0.01
86 88 0.99
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.43
Consensus pattern (86 bp):
TTTATCCGATGATGCACTATAGGTGCCAGTATAATTCCTTCGATTTATTCGATGATGCACTACAT
GTGCCAGTATATTTCCTTCGA
Found at i:16272564 original size:72 final size:71
Alignment explanation
Indices: 16272473--16272809 Score: 453
Period size: 72 Copynumber: 4.7 Consensus size: 71
16272463 CAATGCTAAA
16272473 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
16272538 GTGTAAT
66 GT-TAAT
* *
16272545 CTAGTTTTATCAATGGTTGTTTATATTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
16272610 GTGTAAT
66 GT-TAAT
* * * *
16272617 CTAGTTTTATCAATGGTTGTCTATGTTTGGTTTTTGGATGTTGAATTTATGGTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
**
16272682 GCTTCAGG
66 G-TT-AAT
* * *
16272690 CTAGTTTTATCAATAATTGTTTATGTTTAGTTTTTGGATATTGAATTTATATTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
* *
16272755 ACTAAAT
66 -GTTAAT
* * * **
16272762 -TAGTTTTATCAATAGTTTTTTATATTT-GATTTTGGATATACAATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTAT
16272810 TCATAGGTGA
Statistics
Matches: 237, Mismatches: 25, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
70 18 0.08
71 24 0.10
72 134 0.57
73 61 0.26
ACGTcount: A:0.24, C:0.07, G:0.15, T:0.54
Consensus pattern (71 bp):
CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
GTTAAT
Found at i:16274523 original size:21 final size:21
Alignment explanation
Indices: 16274499--16274549 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
16274489 TACAACTGTG
16274499 TTAATATATA-ATTACAAATAT
1 TTAATATATATATT-CAAATAT
*
16274520 TTAATGAT-TATATTTAAATAT
1 TTAAT-ATATATATTCAAATAT
16274541 TTAA-ATATA
1 TTAATATATA
16274550 GTTTATATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
19 2 0.08
20 2 0.08
21 17 0.65
22 5 0.19
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (21 bp):
TTAATATATATATTCAAATAT
Found at i:16274829 original size:27 final size:27
Alignment explanation
Indices: 16274799--16274855 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
16274789 AACACTTAAA
16274799 TTTTAAACAAAACTTCTCAAAAGCACT
1 TTTTAAACAAAACTTCTCAAAAGCACT
** ** *
16274826 TTTTCCACAGCATTTCTCAAAAGCACT
1 TTTTAAACAAAACTTCTCAAAAGCACT
16274853 TTT
1 TTT
16274856 CAAAAGCAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.35, C:0.25, G:0.05, T:0.35
Consensus pattern (27 bp):
TTTTAAACAAAACTTCTCAAAAGCACT
Found at i:16274858 original size:13 final size:13
Alignment explanation
Indices: 16274810--16274863 Score: 56
Period size: 13 Copynumber: 4.1 Consensus size: 13
16274800 TTTAAACAAA
*
16274810 ACTTCTCAAAAGC
1 ACTTTTCAAAAGC
* *
16274823 ACTTTTTCCACAGC
1 AC-TTTTCAAAAGC
16274837 A-TTTCTCAAAAGC
1 ACTTT-TCAAAAGC
16274850 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
16274863 A
1 A
16274864 ATACTAAACT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
12 3 0.09
13 18 0.55
14 12 0.36
ACGTcount: A:0.35, C:0.28, G:0.07, T:0.30
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:16283902 original size:42 final size:42
Alignment explanation
Indices: 16283833--16283923 Score: 103
Period size: 42 Copynumber: 2.2 Consensus size: 42
16283823 GTTTCATGGA
* * * *
16283833 CCGTGTAACTCATTGACTTGGCTCACACGGTCATGTCGCAGG
1 CCGTGTCACTCACTGACTTGGCACACACGGTCATGTCGCAGC
** *
16283875 CCGTGTCACTCACTGACTTGAG-ACACACGGTTGTGTCTCAGC
1 CCGTGTCACTCACTGACTTG-GCACACACGGTCATGTCGCAGC
16283917 CCGTGTC
1 CCGTGTC
16283924 TTGGACTGTG
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
42 40 0.98
43 1 0.02
ACGTcount: A:0.18, C:0.31, G:0.25, T:0.26
Consensus pattern (42 bp):
CCGTGTCACTCACTGACTTGGCACACACGGTCATGTCGCAGC
Found at i:16286137 original size:26 final size:27
Alignment explanation
Indices: 16286102--16286167 Score: 75
Period size: 26 Copynumber: 2.5 Consensus size: 27
16286092 AGTCCATTTT
16286102 TTTAGTTATTTTATTATT-TAGTTATTA
1 TTTA-TTATTTTATTATTGTAGTTATTA
* *
16286129 TTTATTATTTT-TTGTTGTTGTTATTA
1 TTTATTATTTTATTATTGTAGTTATTA
16286155 -TTATTATATTTAT
1 TTTATTAT-TTTAT
16286168 ACACGCATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
25 11 0.32
26 18 0.53
27 5 0.15
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.70
Consensus pattern (27 bp):
TTTATTATTTTATTATTGTAGTTATTA
Found at i:16286153 original size:37 final size:34
Alignment explanation
Indices: 16286099--16286167 Score: 86
Period size: 37 Copynumber: 1.9 Consensus size: 34
16286089 TCTAGTCCAT
16286099 TTTTTTAGTTATTTTATTATTTAGTTATTATTTATTA
1 TTTTTTAGTTATTTTATTA-TTA-TTA-TATTTATTA
*
16286136 TTTTTT-GTTGTTGTTATTATTATTATATTTAT
1 TTTTTTAGTTATT-TTATTATTATTATATTTAT
16286168 ACACGCATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
34 7 0.23
35 3 0.10
36 8 0.27
37 12 0.40
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.71
Consensus pattern (34 bp):
TTTTTTAGTTATTTTATTATTATTATATTTATTA
Found at i:16286327 original size:18 final size:19
Alignment explanation
Indices: 16286293--16286330 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
16286283 TATACTTTAT
*
16286293 ATTTTATATATACATATAC
1 ATTTTATATACACATATAC
16286312 ATTTTATA-ACACATATAC
1 ATTTTATATACACATATAC
16286330 A
1 A
16286331 CTTTCCACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.45, C:0.13, G:0.00, T:0.42
Consensus pattern (19 bp):
ATTTTATATACACATATAC
Found at i:16286596 original size:15 final size:15
Alignment explanation
Indices: 16286576--16286610 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
16286566 TTTCTATGCC
*
16286576 ATTGTTATATTTATT
1 ATTGTTATATTTACT
*
16286591 ATTGTTGTATTTACT
1 ATTGTTATATTTACT
16286606 ATTGT
1 ATTGT
16286611 GGCATATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.23, C:0.03, G:0.11, T:0.63
Consensus pattern (15 bp):
ATTGTTATATTTACT
Found at i:16290284 original size:13 final size:14
Alignment explanation
Indices: 16290258--16290290 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
16290248 TTAATGTTTC
16290258 TTTTATCTTATTAT
1 TTTTATCTTATTAT
16290272 TTTTATCTT-TTAT
1 TTTTATCTTATTAT
*
16290285 ATTTAT
1 TTTTAT
16290291 TTTACGAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (14 bp):
TTTTATCTTATTAT
Found at i:16290755 original size:18 final size:17
Alignment explanation
Indices: 16290722--16290754 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
16290712 TATTCCTGCA
16290722 ATATTTATATTATTTTG
1 ATATTTATATTATTTTG
16290739 ATATTATATATT-TTTT
1 ATATT-TATATTATTTT
16290755 TAAAATTTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (17 bp):
ATATTTATATTATTTTG
Found at i:16293292 original size:19 final size:19
Alignment explanation
Indices: 16293268--16293344 Score: 100
Period size: 19 Copynumber: 3.8 Consensus size: 19
16293258 AATCTTCGAG
16293268 GATATGTAATCTTAGATAT
1 GATATGTAATCTTAGATAT
*
16293287 GATATGCAATCTTAGATAT
1 GATATGTAATCTTAGATAT
16293306 GATATGTAATCTTAGAAGATAT
1 GATATGTAATCTT---AGATAT
*
16293328 GATTTTGTAATCTTAGA
1 GA-TATGTAATCTTAGA
16293345 GATTTAATTT
Statistics
Matches: 51, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
19 30 0.59
20 3 0.06
22 8 0.16
23 10 0.20
ACGTcount: A:0.36, C:0.06, G:0.17, T:0.40
Consensus pattern (19 bp):
GATATGTAATCTTAGATAT
Found at i:16293354 original size:22 final size:23
Alignment explanation
Indices: 16293310--16293354 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
16293300 AGATATGATA
*
16293310 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
16293333 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
16293355 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:16298865 original size:44 final size:45
Alignment explanation
Indices: 16298811--16299036 Score: 259
Period size: 44 Copynumber: 5.2 Consensus size: 45
16298801 GTGAAAAAGT
*
16298811 AGATCTTGTCTTCATATATTGG-CGTGAAATAGATCGAAGATAGC
1 AGATCTTGTCTTCATATATTGGTCGTGAAGTAGATCGAAGATAGC
* * * *
16298855 AGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GC
1 AGATCTTGTCTTCATATATTGGTCGTGAAGTAGATCGAAGATAGC
* * *
16298898 AGATCTTGTCTTC-TCATATTGGTGGCGAAGTAGATCGAAGAAAGC
1 AGATCTTGTCTTCAT-ATATTGGTCGTGAAGTAGATCGAAGATAGC
* *
16298943 AGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGC
1 AGATCTTGTCTTCATATATTGGTCGTGAAGTAGATCGAAGATAGC
* * * * *
16298987 AGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GT
1 AGATCTTGTCTTCATATATTGGTCGTGAAGTAGATCGAAGATAGC
16299030 AGATCTT
1 AGATCTT
16299037 ATCTCCCTAA
Statistics
Matches: 154, Mismatches: 22, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
42 1 0.01
43 30 0.19
44 99 0.64
45 23 0.15
46 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (45 bp):
AGATCTTGTCTTCATATATTGGTCGTGAAGTAGATCGAAGATAGC
Found at i:16299084 original size:44 final size:44
Alignment explanation
Indices: 16299032--16299985 Score: 311
Period size: 44 Copynumber: 21.7 Consensus size: 44
16299022 GAAGATGTAG
* *
16299032 ATCTTATCTCCCTAAGCAGAAGTGGAGCAGATCGAAGACGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAA
** * * **
16299076 ATCTTATCTTTCTAAG-A-TAGTGGGAAGCAGATTTAAGCCACCAA
1 ATCTTATCTCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACGGCAA
** * * * ** * * * ** * *
16299120 GCCTTGTCTCCCTGAGCAGCAGCAGAGTAGGTCGAAGATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAA
** *
16299164 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGACAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAA
* * **
16299208 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAA-ACCACAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACGGCAA
* * * * * ** * *
16299251 AGCCTTGTCT--CTGAGCAGCAGTGGAGAAGATTGAAGATTGTAG
1 A-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAA
* **
16299294 ATCTTATCTCCCTAAACAGTAGTGGAGCAGATCAAAGACGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAA
* * **
16299338 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAG-CCACAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACGGCAA
* * * * * * ** * *
16299381 AGCCTT-TCCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAG
1 A-TCTTAT-CTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAA
* * * *
16299426 ATCTTATCTCCCTAAGCAGTAGTGGAGCATATCGAAGATGACAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAA
* * * * **
16299470 ATCTTATCTTTCC-AAG-A-TAGTGGGAAACAGATTTAAGCCACCAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACGGCAA
** * * ** * * * ** * *
16299514 GCCTTGTCTCCCTGAGCAACAGCGGAGTAGGTTGAAGATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAA
* *
16299558 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAA
* * * **
16299602 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCACCAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACGGCAA
** * * * * * ** * *
16299646 GCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAA
**
16299690 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAA
** * * **
16299734 ATCTTATCTTTCTAAG-A-TAGTGGGAAGCAGATTTAAGCCACCAA
1 ATCTTATCTCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACGGCAA
** * * * * * * ** * *
16299778 GCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAA
* **
16299822 ATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCAAAGACGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAA
* * **
16299866 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAG-CCACAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACGGCAA
* * * * * * * **** *
16299909 AGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTATAG
1 A-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAA
16299954 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
16299986 CAAAAACGAA
Statistics
Matches: 624, Mismatches: 238, Indels: 96
0.65 0.25 0.10
Matches are distributed among these distances:
41 1 0.00
42 44 0.07
43 58 0.09
44 470 0.75
45 38 0.06
46 13 0.02
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAA
Done.