Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53248092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1300000 characters in sequence are not A, C, G, or T
File 75 of 175
Found at i:22697993 original size:30 final size:30
Alignment explanation
Indices: 22697679--22698028 Score: 191
Period size: 30 Copynumber: 11.8 Consensus size: 30
22697669 TAGCTTTGGT
* *
22697679 TATCG-ATTAGGAAAACGGATGGTGACGAC
1 TATCGAATTATGAAAAGGGATGGTGACGAC
* * *
22697708 CATC-AATAATGAAAATGGATGGTGACGAC
1 TATCGAATTATGAAAAGGGATGGTGACGAC
* * *
22697737 CATC-AATAATGAAAAGGTATGGTGACGAC
1 TATCGAATTATGAAAAGGGATGGTGACGAC
* * * * * *
22697766 CATCGAAATATGAAAAAGGATAGCT-TCGGC
1 TATCGAATTATGAAAAGGGAT-GGTGACGAC
* * * * * *
22697796 TATTGAAATATGGAAACGGATAGCT-TC-AGC
1 TATCGAATTATGAAAAGGGAT-GGTGACGA-C
* * * * *
22697826 TATCGAAATATGAAAAGGTATTGCT-TCGGC
1 TATCGAATTATGAAAAGGGA-TGGTGACGAC
22697856 TATCGAATTATGAACAA-GGATGGTGACGAC
1 TATCGAATTATGAA-AAGGGATGGTGACGAC
* ** *
22697886 CATC-AACAATGAAAAGGGATGGTGACAAC
1 TATCGAATTATGAAAAGGGATGGTGACGAC
* * * **
22697915 CATCGAATTATGAAATGGGATAGCT-TTGAC
1 TATCGAATTATGAAAAGGGAT-GGTGACGAC
* *
22697945 TATCAAATAATGAAAAGGGATGGTGACGAC
1 TATCGAATTATGAAAAGGGATGGTGACGAC
* * *
22697975 TATCGAATTATGAAAAGGGATAGCT-TCGGC
1 TATCGAATTATGAAAAGGGAT-GGTGACGAC
* *
22698005 TATCGAACTAGGAAAAGGGATGGT
1 TATCGAATTATGAAAAGGGATGGT
22698029 TACTACCATT
Statistics
Matches: 254, Mismatches: 54, Indels: 26
0.76 0.16 0.08
Matches are distributed among these distances:
28 2 0.01
29 85 0.33
30 158 0.62
31 9 0.04
ACGTcount: A:0.38, C:0.13, G:0.26, T:0.23
Consensus pattern (30 bp):
TATCGAATTATGAAAAGGGATGGTGACGAC
Found at i:22699948 original size:29 final size:29
Alignment explanation
Indices: 22699885--22699952 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
22699875 TAATCAACCG
22699885 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
22699914 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
22699943 CGCACACTTA
1 CGCACACTTA
22699953 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:22700065 original size:174 final size:174
Alignment explanation
Indices: 22699774--22700101 Score: 593
Period size: 174 Copynumber: 1.9 Consensus size: 174
22699764 AACTCAAGGT
* * *
22699774 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCACACCCTTAATGTAAATAATTTATA
*
22699839 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
22699904 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
22699948 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCACACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCACACCCTTAATGTAAATAATTTATA
*
22700013 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
22700078 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
22700102 TGTACAATTT
Statistics
Matches: 147, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 147 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCACACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:22700093 original size:29 final size:30
Alignment explanation
Indices: 22700054--22700132 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
22700044 CTTAATAATC
22700054 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
22700084 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
22700113 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
22700133 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:22708090 original size:29 final size:29
Alignment explanation
Indices: 22708027--22708094 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
22708017 TAATCAACCG
22708027 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
22708056 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
22708085 CGCACACTTA
1 CGCACACTTA
22708095 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:22708207 original size:174 final size:174
Alignment explanation
Indices: 22707916--22708243 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
22707906 AACTCAAGGT
* *
22707916 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
22707981 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
22708046 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
22708090 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
22708155 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
22708220 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
22708244 TGTACAATTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:22708235 original size:29 final size:30
Alignment explanation
Indices: 22708196--22708274 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
22708186 CTTAATAATC
22708196 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
22708226 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
22708255 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
22708275 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:22718591 original size:112 final size:111
Alignment explanation
Indices: 22718458--22718683 Score: 425
Period size: 112 Copynumber: 2.0 Consensus size: 111
22718448 CTTGAATGGT
22718458 CTAATTACCATTTAAGTATCTTTTCCTTTATTCAATTAACCATTTAACCACTAAAATCAAATAGT
1 CTAATTACCATTTAAGTATCTTTTCCTTTATTCAATTAACCATTTAACCACTAAAATCAAATAGT
22718523 GATCAAATTTTACATATTTTACGATTTAGTCCTTTTTAATTCATTAA
66 GATCAAATTTTACATATTTTACGATTTAGTCC-TTTTAATTCATTAA
*
22718570 CTAATTACCATTTAAGTATCTTTTCCTTTATTCAATTAACCATTTAACCACTGAAATCAAATAGT
1 CTAATTACCATTTAAGTATCTTTTCCTTTATTCAATTAACCATTTAACCACTAAAATCAAATAGT
*
22718635 GATCAAATTTTACATCTTTTACGATTTAGTCCTTTTAATTCATTAA
66 GATCAAATTTTACATATTTTACGATTTAGTCCTTTTAATTCATTAA
22718681 CTA
1 CTA
22718684 TGGAAACGTT
Statistics
Matches: 112, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
111 17 0.15
112 95 0.85
ACGTcount: A:0.34, C:0.18, G:0.05, T:0.43
Consensus pattern (111 bp):
CTAATTACCATTTAAGTATCTTTTCCTTTATTCAATTAACCATTTAACCACTAAAATCAAATAGT
GATCAAATTTTACATATTTTACGATTTAGTCCTTTTAATTCATTAA
Found at i:22721627 original size:244 final size:247
Alignment explanation
Indices: 22721187--22721671 Score: 649
Period size: 244 Copynumber: 2.0 Consensus size: 247
22721177 AACATAATAT
* * * *
22721187 TAGTACAATATATATTGCATATTATTATATATTATTGTTTATCATTATATTAGTTGAATTATGCT
1 TAGTACAATATATATTACATATTATTATATATTAATGTTTATCATTATACTAGTTGAAATATGCT
* * * * *
22721252 CTAAGTCCCTATACTTTTCTTACATTTGAAAGTTAGCATTTCTGATGTATTATGTAATGATATAT
66 CTAAGTCCCTATACTTTTCGTACATTTGAAAGTTA-CATTCCTGATATATTATATAATGATATAC
* * * *
22721317 CATATCAAATAATATATTATTAATTTATATATATGCATTAATGATTAAACATTAAAATACCATGT
130 CATATCAAATAATATATTAATAATTTATATATATGCATCAATGATTAAAAATTAAAATAACATGT
*
22721382 AATACTATATATTTTGTTGTAATGTATA-T-T-ATAAAAATTATATGTAGTAG
195 AATACTATATATTTTGTTATAATGTATATTGTAATAAAAATTATATGTAGTAG
* * * * *
22721432 TAGTACATTATATATTACTTATTTTTATATATTAAT-TTTATTATTGTACTAGTTGAAATATGCT
1 TAGTACAATATATATTACATATTATTATATATTAATGTTTATCATTATACTAGTTGAAATATGCT
* * * *
22721496 TTAAGTCCTTATATTTTTCGTACATTTGAAAGTTA-ATCCTCCT-ACTATATTATATAATGCTAT
66 CTAAGTCCCTATACTTTTCGTACATTTGAAAGTTACAT--TCCTGA-TATATTATATAATGATAT
* * *
22721559 ACCATATCATATAATATATTAATAGTTTATATATATGCATCAATGATTAAAAATTATAATAACAT
128 ACCATATCAAATAATATATTAATAATTTATATATATGCATCAATGATTAAAAATTAAAATAACAT
*
22721624 GTAATACTATATATTTTGTTATAATTTATATTGTAATAAAAATTATAT
193 GTAATACTATATATTTTGTTATAATGTATATTGTAATAAAAATTATAT
22721672 AGATTATATT
Statistics
Matches: 207, Mismatches: 27, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
242 2 0.01
243 1 0.00
244 158 0.76
245 32 0.15
246 1 0.00
247 13 0.06
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (247 bp):
TAGTACAATATATATTACATATTATTATATATTAATGTTTATCATTATACTAGTTGAAATATGCT
CTAAGTCCCTATACTTTTCGTACATTTGAAAGTTACATTCCTGATATATTATATAATGATATACC
ATATCAAATAATATATTAATAATTTATATATATGCATCAATGATTAAAAATTAAAATAACATGTA
ATACTATATATTTTGTTATAATGTATATTGTAATAAAAATTATATGTAGTAG
Found at i:22721703 original size:34 final size:35
Alignment explanation
Indices: 22721665--22721739 Score: 100
Period size: 34 Copynumber: 2.2 Consensus size: 35
22721655 TGTAATAAAA
22721665 ATTATATAGATTATATTT-TTAGTAATAATTATAT
1 ATTATATAGATTATATTTATTAGTAATAATTATAT
** * *
22721699 ATTAT-TTTATTTTATTTATTAGTAATAGTTATAT
1 ATTATATAGATTATATTTATTAGTAATAATTATAT
22721733 ATTATAT
1 ATTATAT
22721740 TAAAGTATAG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
33 9 0.26
34 25 0.71
35 1 0.03
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.57
Consensus pattern (35 bp):
ATTATATAGATTATATTTATTAGTAATAATTATAT
Found at i:22721863 original size:16 final size:17
Alignment explanation
Indices: 22721842--22721874 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
22721832 ATAATTATAG
22721842 TATTAAA-AATATTTTA
1 TATTAAATAATATTTTA
22721858 TATTAAATTAATATTTT
1 TATTAAA-TAATATTTT
22721875 TAAAATATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TATTAAATAATATTTTA
Found at i:22725389 original size:21 final size:21
Alignment explanation
Indices: 22725363--22725470 Score: 75
Period size: 21 Copynumber: 5.3 Consensus size: 21
22725353 CGTGCCCTTG
22725363 TTGCACTTTAGTACCCCTGAA
1 TTGCACTTTAGTACCCCTGAA
22725384 TTGCAC-TTATGTACCCCT--A
1 TTGCACTTTA-GTACCCCTGAA
*
22725403 TTGTACTTT-GATACCCCTGAA
1 TTGCACTTTAG-TACCCCTGAA
* * * *
22725424 TTGCTC-TTACGTGCCACTG-T
1 TTGCACTTTA-GTACCCCTGAA
* * *
22725444 TTGTACTTTGGTAACCCTGAA
1 TTGCACTTTAGTACCCCTGAA
22725465 TTGCAC
1 TTGCAC
22725471 ATACGTGCCC
Statistics
Matches: 64, Mismatches: 14, Indels: 18
0.67 0.15 0.19
Matches are distributed among these distances:
18 1 0.02
19 13 0.20
20 17 0.27
21 32 0.50
22 1 0.02
ACGTcount: A:0.20, C:0.27, G:0.16, T:0.37
Consensus pattern (21 bp):
TTGCACTTTAGTACCCCTGAA
Found at i:22725411 original size:40 final size:39
Alignment explanation
Indices: 22725340--22725485 Score: 157
Period size: 40 Copynumber: 3.6 Consensus size: 39
22725330 TCAATACTTA
* * * *
22725340 TGAACTGCACTTACGTGCCCTTGTTGCACTTTAGTACCCC
1 TGAATTGCACTTACGTGCCCCTATTGTACTTT-GTACCCC
* *
22725380 TGAATTGCACTTATGTACCCCTATTGTACTTTGATACCCC
1 TGAATTGCACTTACGTGCCCCTATTGTACTTTG-TACCCC
* * * *
22725420 TGAATTGCTCTTACGTGCCACTGTTTGTACTTTGGTAACCC
1 TGAATTGCACTTACGTGCCCCT-ATTGTACTTT-GTACCCC
*
22725461 TGAATTGCACATACGTGCCCCTATT
1 TGAATTGCACTTACGTGCCCCTATT
22725486 TACACTCCGA
Statistics
Matches: 87, Mismatches: 16, Indels: 6
0.80 0.15 0.06
Matches are distributed among these distances:
39 1 0.01
40 52 0.60
41 33 0.38
42 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.16, T:0.36
Consensus pattern (39 bp):
TGAATTGCACTTACGTGCCCCTATTGTACTTTGTACCCC
Found at i:22731701 original size:47 final size:47
Alignment explanation
Indices: 22731626--22731720 Score: 163
Period size: 47 Copynumber: 2.0 Consensus size: 47
22731616 GGTTTTTAAT
*
22731626 GGTTGAATACGTTGATTTCTATTATGCCAAGAGAGCGGATCACCTGG
1 GGTTGAATACATTGATTTCTATTATGCCAAGAGAGCGGATCACCTGG
* *
22731673 GGTTGAATACATTGATTTTTATTGTGCCAAGAGAGCGGATCACCTGG
1 GGTTGAATACATTGATTTCTATTATGCCAAGAGAGCGGATCACCTGG
22731720 G
1 G
22731721 AATTCTTTCA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (47 bp):
GGTTGAATACATTGATTTCTATTATGCCAAGAGAGCGGATCACCTGG
Found at i:22735761 original size:25 final size:25
Alignment explanation
Indices: 22735733--22735787 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 25
22735723 CTCGTCTGAA
*
22735733 CATACCGATTTACAGCTCATGTAAG
1 CATACCGATTCACAGCTCATGTAAG
*
22735758 CATACCGATTCACAGCTCGTGTAAG
1 CATACCGATTCACAGCTCATGTAAG
22735783 CATAC
1 CATAC
22735788 ATGTACAGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (25 bp):
CATACCGATTCACAGCTCATGTAAG
Found at i:22739571 original size:199 final size:199
Alignment explanation
Indices: 22739220--22739602 Score: 606
Period size: 199 Copynumber: 1.9 Consensus size: 199
22739210 TTCTAAAGTG
* *
22739220 TTTCTAAAGTCTCGAGGGCTTGATGAAGGGACGATCTGCATGTATATGAATGGATTAAACTATGT
1 TTTCTAAAGTCTCGAGGGCTCGATAAAGGGACGATCTGCATGTATATGAATGGATTAAACTATGT
* *
22739285 TTATATCAATGTTTGGAAATGCATGTTTTCATGTTATGATTTTACAATAATGCTTTGTAACCCTA
66 TTATATCAATGTTTGGAAATGCATGTTTTCATGTTACGATTTTACAATAATGCTTCGTAACCCTA
*
22739350 TTCGGGCGACAGATATAGGTTAGGGGTGTTATAGAAACAC-AGTCGTGTGACTCAAACATTTGGG
131 TTCGGGCGACAGATACAGGTTAGGGGTGTTATAGAAACACGA-TCGTGTGACTCAAACATTTGGG
22739414 ACACA
195 ACACA
* * ** *
22739419 TTTCTAAGGTCTCGAGGGCTCGATAAAGGGATGATCTGCATGTATATGAATGGATTATGCTTTGT
1 TTTCTAAAGTCTCGAGGGCTCGATAAAGGGACGATCTGCATGTATATGAATGGATTAAACTATGT
* * *
22739484 TTATATCAATGTTTGGAAATGTATGTTTTTATGTTACGATTTTACGATAATGCTTCGTAACCCTA
66 TTATATCAATGTTTGGAAATGCATGTTTTCATGTTACGATTTTACAATAATGCTTCGTAACCCTA
* * *
22739549 TTCTGGCGACGGATACAGGTTAGGGGTGTTATAGAAACACGATTGTGTGACTCA
131 TTCGGGCGACAGATACAGGTTAGGGGTGTTATAGAAACACGATCGTGTGACTCA
22739603 TATGGTTGAG
Statistics
Matches: 167, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
199 166 0.99
200 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (199 bp):
TTTCTAAAGTCTCGAGGGCTCGATAAAGGGACGATCTGCATGTATATGAATGGATTAAACTATGT
TTATATCAATGTTTGGAAATGCATGTTTTCATGTTACGATTTTACAATAATGCTTCGTAACCCTA
TTCGGGCGACAGATACAGGTTAGGGGTGTTATAGAAACACGATCGTGTGACTCAAACATTTGGGA
CACA
Found at i:22742655 original size:101 final size:102
Alignment explanation
Indices: 22742537--22742720 Score: 284
Period size: 101 Copynumber: 1.8 Consensus size: 102
22742527 AAGTGATGGC
*
22742537 CACGTGTGTAGTACTATGTGCAGGCTACCACGTGCACC-AGA-A-TGATAGGTCGCATGTGTAGT
1 CACGTGTGTAGTACTATGTGCAGGCTACCACGTGCACCGA-ATAGTGAT-GGTCACATGTGTAGT
22742599 ACTATGTGCAGGCTACTATGCGTACCAGATTGCTTTGAT
64 ACTATGTGCAGGCTACTATGCGTACCAGATTGCTTTGAT
* * *
22742638 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAATAGTGATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGCAGGCTACCACGTGCACCGAATAGTGATGGTCACATGTGTAGTAC
*
22742703 TATGTGTAGGCTACTATG
66 TATGTGCAGGCTACTATG
22742721 TGAACCGGTA
Statistics
Matches: 75, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
101 36 0.48
102 35 0.47
103 4 0.05
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.30
Consensus pattern (102 bp):
CACGTGTGTAGTACTATGTGCAGGCTACCACGTGCACCGAATAGTGATGGTCACATGTGTAGTAC
TATGTGCAGGCTACTATGCGTACCAGATTGCTTTGAT
Found at i:22742664 original size:51 final size:50
Alignment explanation
Indices: 22742541--22742718 Score: 196
Period size: 51 Copynumber: 3.5 Consensus size: 50
22742531 GATGGCCACG
* * * * * *
22742541 TGTGTAGTACTATGTGCAGGCTACCACGTGCACCAGAATGATAGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATTGTTTGGTCACA
* * * *
22742591 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATTGCTTTGATCACG
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATTG-TTTGGTCACA
* * *
22742642 TGTGTAGTACTATGTGCAGGCTACTACGTGTATC-GAATAGTGATGGTCACA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCAG-ATTGT-TTGGTCACA
*
22742693 TGTGTAGTACTATGTGTAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
22742719 TGTGAACCGG
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
50 37 0.35
51 70 0.65
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATTGTTTGGTCACA
Found at i:22746001 original size:51 final size:50
Alignment explanation
Indices: 22745876--22746061 Score: 228
Period size: 51 Copynumber: 3.7 Consensus size: 50
22745866 GTGAAAGTGA
* * *
22745876 TGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAAAGAT
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATAGTT
* * * * *
22745926 AGGTCGCATGTGTAGTACTATGTGCATGCTACTATGTGTACCGGATAGCTT
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATAG-TT
* * * *
22745977 TGCTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATAGTGA
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATAGT-T
* *
22746028 TGGTCACATGTTTAGTACTATGCGCAGGCTACTA
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTA
22746062 TGTGAACTGG
Statistics
Matches: 113, Mismatches: 21, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
50 42 0.37
51 71 0.63
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (50 bp):
TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATAGTT
Found at i:22751028 original size:20 final size:20
Alignment explanation
Indices: 22751003--22751040 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
22750993 ATCTAAATTG
22751003 AGCTTAAACGAGCTGATTTA
1 AGCTTAAACGAGCTGATTTA
**
22751023 AGCTTAAGTGAGCTGATT
1 AGCTTAAACGAGCTGATT
22751041 GGAGATGAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.32
Consensus pattern (20 bp):
AGCTTAAACGAGCTGATTTA
Found at i:22752276 original size:17 final size:18
Alignment explanation
Indices: 22752256--22752302 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 18
22752246 TTCTTTTGAT
22752256 TTTTCTTCA-TTTC-TTTC
1 TTTT-TTCATTTTCTTTTC
22752273 -TTTTTCATTTTCTTTTC
1 TTTTTTCATTTTCTTTTC
22752290 -TTTTTCATTTTCT
1 TTTTTTCATTTTCT
22752303 CTTAGTTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.14
16 7 0.25
17 17 0.61
ACGTcount: A:0.06, C:0.19, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTTTCATTTTCTTTTC
Found at i:22754541 original size:8 final size:8
Alignment explanation
Indices: 22754528--22754556 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
22754518 TTTTAAATGA
22754528 TATTTTAT
1 TATTTTAT
22754536 TATTTTAT
1 TATTTTAT
22754544 TATTTTAT
1 TATTTTAT
22754552 TATTT
1 TATTT
22754557 AGTATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:22756679 original size:51 final size:51
Alignment explanation
Indices: 22756546--22756681 Score: 195
Period size: 50 Copynumber: 2.7 Consensus size: 51
22756536 AGTGAAAGTG
** *
22756546 ATGGTCATGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAATGAT
* * *
22756597 A-GGTCGCATGTGTAGTACTATGTGCAGGCTACTACGTGTATCAG-ATGGT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAATGAT
22756646 AATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
1 -ATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
22756682 TGTGAACCGA
Statistics
Matches: 76, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
49 4 0.05
50 39 0.51
51 33 0.43
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (51 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAATGAT
Found at i:22756685 original size:26 final size:26
Alignment explanation
Indices: 22756604--22756685 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 26
22756594 GATAGGTCGC
22756604 ATGTGTAGTACTATGTGCAGGCTACT
1 ATGTGTAGTACTATGTGCAGGCTACT
* * *
22756630 ACGTGTA-T-CAGATG-GTAATGG-TCAC-
1 ATGTGTAGTAC-TATGTG-CA-GGCT-ACT
22756655 ATGTGTAGTACTATGTGCAGGCTACT
1 ATGTGTAGTACTATGTGCAGGCTACT
22756681 ATGTG
1 ATGTG
22756686 AACCGAACAT
Statistics
Matches: 41, Mismatches: 6, Indels: 18
0.63 0.09 0.28
Matches are distributed among these distances:
24 2 0.05
25 16 0.39
26 21 0.51
27 2 0.05
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (26 bp):
ATGTGTAGTACTATGTGCAGGCTACT
Found at i:22756778 original size:45 final size:45
Alignment explanation
Indices: 22756692--22756778 Score: 129
Period size: 45 Copynumber: 1.9 Consensus size: 45
22756682 TGTGAACCGA
* * * *
22756692 ACATCAATGATTAGTAAGGTGGTTGCTATGTGCTGATTCCACCAG
1 ACATCAATGATTAATAAGGTGGTTGCCATGTGCTAAATCCACCAG
*
22756737 ACATCATTGATTAATAAGGTGGTTGCCATGTGCTAAATCCAC
1 ACATCAATGATTAATAAGGTGGTTGCCATGTGCTAAATCCAC
22756779 TGAGTATCTG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (45 bp):
ACATCAATGATTAATAAGGTGGTTGCCATGTGCTAAATCCACCAG
Found at i:22759945 original size:19 final size:18
Alignment explanation
Indices: 22759905--22759955 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 18
22759895 AATACTTTAC
22759905 CTTTTTTTTAAC-TCGAA
1 CTTTTTTTTAACTTCGAA
22759922 CTTTTTTTTAACTTCGTATA
1 CTTTTTTTTAACTTCG-A-A
*
22759942 -TTTTTTTTTACTTC
1 CTTTTTTTTAACTTC
22759956 AAATATAACA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
17 12 0.40
18 3 0.10
19 14 0.47
20 1 0.03
ACGTcount: A:0.18, C:0.16, G:0.04, T:0.63
Consensus pattern (18 bp):
CTTTTTTTTAACTTCGAA
Found at i:22759961 original size:19 final size:19
Alignment explanation
Indices: 22759906--22759961 Score: 53
Period size: 19 Copynumber: 3.1 Consensus size: 19
22759896 ATACTTTACC
* *
22759906 TTTTTTTTAAC-TCGAA-C
1 TTTTTTTTAACTTCAAATA
**
22759923 TTTTTTTTAACTTCGTATA
1 TTTTTTTTAACTTCAAATA
*
22759942 TTTTTTTTTACTTCAAATA
1 TTTTTTTTAACTTCAAATA
22759961 T
1 T
22759962 AACAATGCAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
17 11 0.34
18 4 0.12
19 17 0.53
ACGTcount: A:0.23, C:0.12, G:0.04, T:0.61
Consensus pattern (19 bp):
TTTTTTTTAACTTCAAATA
Found at i:22762061 original size:50 final size:49
Alignment explanation
Indices: 22761943--22762083 Score: 140
Period size: 49 Copynumber: 2.9 Consensus size: 49
22761933 GGTGGAAGTA
* * ** * *
22761943 AGTGGCAGTTTATCTGCAAATAAATGGTGGCTTGTCCATGAAGTGTTTC
1 AGTGGTAGTTTATCTGCAAATAAGTGGTGGCTTGTCCACAAAATATTTC
* * * * *
22761992 AATGGTAGTATATCCGCAAATCAGTGGTGGCTTGTGCACAAAATATTATC
1 AGTGGTAGTTTATCTGCAAATAAGTGGTGGCTTGTCCACAAAATATT-TC
* *
22762042 AGTGGTAGTTTATCTGCAAATTAGTGGTGTCGTT-TCCACAAA
1 AGTGGTAGTTTATCTGCAAATAAGTGGTGGC-TTGTCCACAAA
22762084 TGGTGATTCG
Statistics
Matches: 73, Mismatches: 17, Indels: 3
0.78 0.18 0.03
Matches are distributed among these distances:
49 36 0.49
50 35 0.48
51 2 0.03
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (49 bp):
AGTGGTAGTTTATCTGCAAATAAGTGGTGGCTTGTCCACAAAATATTTC
Found at i:22763823 original size:11 final size:11
Alignment explanation
Indices: 22763807--22763832 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
22763797 TAAGACTTAG
22763807 TTTTTTTATGT
1 TTTTTTTATGT
22763818 TTTTTTTATGT
1 TTTTTTTATGT
22763829 TTTT
1 TTTT
22763833 CATACCTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.00, G:0.08, T:0.85
Consensus pattern (11 bp):
TTTTTTTATGT
Found at i:22772964 original size:23 final size:23
Alignment explanation
Indices: 22772915--22772966 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
22772905 ACCTACTTTC
* *
22772915 TTACTGTAGTAATTTTCAGGGTG
1 TTACAGTAGTAATTTTCAGGGTA
*
22772938 TTACAGTAGTAATTTT-TGGGATA
1 TTACAGTAGTAATTTTCAGGG-TA
22772961 TTACAG
1 TTACAG
22772967 GTCGAGAGAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 3 0.12
23 22 0.88
ACGTcount: A:0.27, C:0.08, G:0.23, T:0.42
Consensus pattern (23 bp):
TTACAGTAGTAATTTTCAGGGTA
Found at i:22775087 original size:17 final size:18
Alignment explanation
Indices: 22775065--22775098 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
22775055 CAGAAATGTA
22775065 TTTGGGGTTAGA-AGTTT
1 TTTGGGGTTAGACAGTTT
*
22775082 TTTGGGTTTAGACAGTT
1 TTTGGGGTTAGACAGTT
22775099 ATTACAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.18, C:0.03, G:0.32, T:0.47
Consensus pattern (18 bp):
TTTGGGGTTAGACAGTTT
Found at i:22777478 original size:35 final size:38
Alignment explanation
Indices: 22777413--22777556 Score: 188
Period size: 40 Copynumber: 3.8 Consensus size: 38
22777403 GATACTAAAT
* * *
22777413 CGGGTTAAGTCCCGAAGCATTCGTGTGAGTTATTAATC
1 CGGGTTAAGTCCCGAGGCATTCGTGCGAGTTGTTAATC
22777451 C-GGTTAAGT-CCGAGGC-TTCGTGCGAGTTGTTAATC
1 CGGGTTAAGTCCCGAGGCATTCGTGCGAGTTGTTAATC
22777486 CGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATC
1 CGGGTTAAGTCCCG-AGGCATTCGTGCGAGTTGTT-AATC
* *
22777526 CGGGTTATGTCCCGAAGGCATT-GTGTGAGTT
1 CGGGTTAAGTCCCG-AGGCATTCGTGCGAGTT
22777557 ACTAAAACCG
Statistics
Matches: 96, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
35 18 0.19
36 14 0.15
37 11 0.11
38 5 0.05
39 23 0.24
40 25 0.26
ACGTcount: A:0.20, C:0.19, G:0.31, T:0.31
Consensus pattern (38 bp):
CGGGTTAAGTCCCGAGGCATTCGTGCGAGTTGTTAATC
Found at i:22777538 original size:40 final size:40
Alignment explanation
Indices: 22777386--22777584 Score: 218
Period size: 39 Copynumber: 5.2 Consensus size: 40
22777376 GGACTAAGAT
* * * *
22777386 CGAAGGCCTTTGTGCGAGATACTAAAT-CGGGTTAAGTCC
1 CGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCC
*
22777425 CGAA-GCATTCGTGTGAGTTATT-AATCC-GGTTAAGT-C
1 CGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCC
*
22777461 CG-AGGC-TTCGTGCGAGTTGTT-AATCCGGGTTAAGTCC
1 CGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCC
* *
22777498 CGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCC
1 CGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCC
* * * * *
22777538 CGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCC
1 CGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCC
22777577 CGAAGGCA
1 CGAAGGCA
22777585 CTTGAACGAG
Statistics
Matches: 140, Mismatches: 13, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
35 19 0.14
36 13 0.09
37 14 0.10
38 18 0.13
39 51 0.36
40 25 0.18
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (40 bp):
CGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCC
Found at i:22796866 original size:40 final size:40
Alignment explanation
Indices: 22796771--22796992 Score: 231
Period size: 40 Copynumber: 5.7 Consensus size: 40
22796761 TTGAATGCTG
* * * * *
22796771 TCCGGGCTAAGT-CCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
22796810 TCC-GGATAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
22796849 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* **
22796889 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
22796929 TCCGGGTTATGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
22796968 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
22796993 AACGAGGAGC
Statistics
Matches: 160, Mismatches: 18, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
38 26 0.16
39 38 0.24
40 96 0.60
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:22804715 original size:40 final size:40
Alignment explanation
Indices: 22804683--22804876 Score: 282
Period size: 40 Copynumber: 4.9 Consensus size: 40
22804673 GAATGCCTTT
* *
22804683 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 GTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
*
22804723 GTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 GTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
*
22804763 GTGCGAGCTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 GTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
22804803 GTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATT-
1 GTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
* * * * *
22804842 GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 GTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
22804877 AACTTGAACG
Statistics
Matches: 141, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 30 0.21
40 111 0.79
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
GTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
Found at i:22806632 original size:30 final size:30
Alignment explanation
Indices: 22806597--22806653 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
22806587 CCTATAAGGG
*
22806597 ACACACGACCAAGACACACGCTCGTGTGTC
1 ACACACGACCAAGACACACGCCCGTGTGTC
* * *
22806627 ACACACGGCTATGACACACGCCCGTGT
1 ACACACGACCAAGACACACGCCCGTGT
22806654 CTTTGGCCGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.28, C:0.37, G:0.21, T:0.14
Consensus pattern (30 bp):
ACACACGACCAAGACACACGCCCGTGTGTC
Found at i:22808925 original size:51 final size:54
Alignment explanation
Indices: 22808861--22808972 Score: 133
Period size: 51 Copynumber: 2.1 Consensus size: 54
22808851 TTAATGAAGT
* *
22808861 CATGCA-TTATGTAACTCTAATGTTA-ATT-AAGTTTGCATC-CTAAATTATGA
1 CATGCATTTATGTAACTCGAATGTTAGATTAAAGTTTGCATCACTAAATTAAGA
* * * * *
22808911 CATGCATTTATGTAACTGGCATGTTAGTTTAAAGTTTGCATCATTAAATTAAGT
1 CATGCATTTATGTAACTCGAATGTTAGATTAAAGTTTGCATCACTAAATTAAGA
22808965 CATGCATT
1 CATGCATT
22808973 AAATAACTCA
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
50 6 0.12
51 16 0.31
52 2 0.04
53 11 0.22
54 16 0.31
ACGTcount: A:0.32, C:0.13, G:0.14, T:0.40
Consensus pattern (54 bp):
CATGCATTTATGTAACTCGAATGTTAGATTAAAGTTTGCATCACTAAATTAAGA
Found at i:22811245 original size:17 final size:17
Alignment explanation
Indices: 22811209--22811263 Score: 74
Period size: 17 Copynumber: 3.1 Consensus size: 17
22811199 TGTTGCATGG
*
22811209 CCGTGTGGACTCACACGC
1 CCGTGTGG-CCCACACGC
*
22811227 CCGTGTGGCCCATACGC
1 CCGTGTGGCCCACACGC
22811244 CCGTGTGGCCCACACAGC
1 CCGTGTGGCCCACAC-GC
22811262 CC
1 CC
22811264 AAAATGGCCT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
17 21 0.64
18 12 0.36
ACGTcount: A:0.15, C:0.44, G:0.27, T:0.15
Consensus pattern (17 bp):
CCGTGTGGCCCACACGC
Found at i:22815527 original size:50 final size:50
Alignment explanation
Indices: 22815455--22815731 Score: 274
Period size: 50 Copynumber: 5.5 Consensus size: 50
22815445 CTGTACTACT
* * ** *
22815455 AATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTGCC
1 AATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCC
* ** * *
22815505 TATGCCATGTTGCAGACATGGTCTTCCGTGGGACCTCTCATCTCGGTGCC
1 AATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCC
* **
22815555 AATGCCATGTCCCAGACATGGTCTTACATAGGACCTCTCATCTTAGTGCC
1 AATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCC
* *
22815605 AACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGATGCT
1 AATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTC-G-G-TGCC
* * * * * *
22815658 AATGCCGTGTCCCATG-CATGGTCTGACACT-GG--CTCACATATCGATGTC
1 AATGCCATGTCCCA-GACATGGTCTTACA-TGGGACCTCTCATCTCGGTGCC
* *
22815706 GATGCCATGTCCCAGACCTGGTCTTA
1 AATGCCATGTCCCAGACATGGTCTTA
22815732 TACGAGATCG
Statistics
Matches: 186, Mismatches: 35, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
47 1 0.01
48 22 0.12
50 124 0.67
51 8 0.04
52 1 0.01
53 28 0.15
54 2 0.01
ACGTcount: A:0.21, C:0.29, G:0.22, T:0.28
Consensus pattern (50 bp):
AATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCC
Found at i:22821693 original size:54 final size:54
Alignment explanation
Indices: 22821623--22821791 Score: 259
Period size: 54 Copynumber: 3.1 Consensus size: 54
22821613 AGTTTAATCT
* * *
22821623 AGCAAC-TAAGTGAACTAAGTTGAACTTAATTAACTAAGATGAGCAATTTATTCC
1 AGCAACTTAAGT-AACTAAGATGAACTCAATTAACTAAGATGAGTAATTTATTCC
* *
22821677 AGCAACTTAAGTAACTAAGGTGAACTCAATTAACTAAGATGAGTAATTTATTCT
1 AGCAACTTAAGTAACTAAGATGAACTCAATTAACTAAGATGAGTAATTTATTCC
*
22821731 AGCAACTTAATTAACTAAGATGAACTCAATTAACTAAGATGAGTAATTTATTCC
1 AGCAACTTAAGTAACTAAGATGAACTCAATTAACTAAGATGAGTAATTTATTCC
*
22821785 AACAACT
1 AGCAACT
22821792 AAATACTTAT
Statistics
Matches: 106, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
54 101 0.95
55 5 0.05
ACGTcount: A:0.42, C:0.15, G:0.13, T:0.30
Consensus pattern (54 bp):
AGCAACTTAAGTAACTAAGATGAACTCAATTAACTAAGATGAGTAATTTATTCC
Found at i:22821710 original size:19 final size:19
Alignment explanation
Indices: 22821688--22821772 Score: 72
Period size: 19 Copynumber: 4.6 Consensus size: 19
22821678 GCAACTTAAG
*
22821688 TAACTAAGGTGAACTCAAT
1 TAACTAAGATGAACTCAAT
*
22821707 TAACTAAGATG-AGT-AATT
1 TAACTAAGATGAACTCAA-T
* * *
22821725 TATTCT-AG--CAACTTAAT
1 TA-ACTAAGATGAACTCAAT
22821742 TAACTAAGATGAACTCAAT
1 TAACTAAGATGAACTCAAT
22821761 TAACTAAGATGA
1 TAACTAAGATGA
22821773 GTAATTTATT
Statistics
Matches: 51, Mismatches: 8, Indels: 14
0.70 0.11 0.19
Matches are distributed among these distances:
16 2 0.04
17 9 0.18
18 9 0.18
19 31 0.61
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.31
Consensus pattern (19 bp):
TAACTAAGATGAACTCAAT
Found at i:22824314 original size:22 final size:22
Alignment explanation
Indices: 22824284--22824339 Score: 67
Period size: 25 Copynumber: 2.4 Consensus size: 22
22824274 TTGTGGTGTA
*
22824284 GTGGCAAGGTGGCGACATAGGT
1 GTGGTAAGGTGGCGACATAGGT
*
22824306 GTGGTAAGGAGGTGGCGTCATAGGT
1 GTGGT-A--AGGTGGCGACATAGGT
22824331 GTGGTAAGG
1 GTGGTAAGG
22824340 AGGTCAGAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
22 7 0.24
23 1 0.03
24 1 0.03
25 20 0.69
ACGTcount: A:0.21, C:0.09, G:0.48, T:0.21
Consensus pattern (22 bp):
GTGGTAAGGTGGCGACATAGGT
Found at i:22824318 original size:25 final size:25
Alignment explanation
Indices: 22824290--22824343 Score: 99
Period size: 25 Copynumber: 2.2 Consensus size: 25
22824280 TGTAGTGGCA
22824290 AGGTGGCGACATAGGTGTGGTAAGG
1 AGGTGGCGACATAGGTGTGGTAAGG
*
22824315 AGGTGGCGTCATAGGTGTGGTAAGG
1 AGGTGGCGACATAGGTGTGGTAAGG
22824340 AGGT
1 AGGT
22824344 CAGAGGTTCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.22, C:0.07, G:0.48, T:0.22
Consensus pattern (25 bp):
AGGTGGCGACATAGGTGTGGTAAGG
Found at i:22829734 original size:27 final size:28
Alignment explanation
Indices: 22829681--22829746 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 28
22829671 ACAAGAACAT
22829681 ATTAAAAACATGTAATAGACTAAGACAA
1 ATTAAAAACATGTAATAGACTAAGACAA
* * *
22829709 ATTAAAAACATGTACTAG-CTATGACAT
1 ATTAAAAACATGTAATAGACTAAGACAA
22829736 ATT-AAAACATG
1 ATTAAAAACATG
22829747 CATTAAAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
26 8 0.23
27 10 0.29
28 17 0.49
ACGTcount: A:0.52, C:0.12, G:0.11, T:0.26
Consensus pattern (28 bp):
ATTAAAAACATGTAATAGACTAAGACAA
Found at i:22848643 original size:50 final size:50
Alignment explanation
Indices: 22848604--22848744 Score: 142
Period size: 50 Copynumber: 2.8 Consensus size: 50
22848594 TATTGAGGTT
* * *
22848604 ATGAGAGGTCCCACGTAAGACTATGTCTGGGACATGGCATTGGCGCCGAG
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTAGCGACGAG
* * * *
22848654 ATGAGAGGTCCCTCGTAAGGCCATGTCTGGGACATGGC-TT-GGGCACTGAT
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTAGCG-AC-GAG
** * * *
22848704 ATGAGAACTCCCATGTAAGACCATATCTGGGATATGGCATT
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATT
22848745 GGCAGTACAG
Statistics
Matches: 75, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
48 2 0.03
49 3 0.04
50 68 0.91
51 2 0.03
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.23
Consensus pattern (50 bp):
ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTAGCGACGAG
Found at i:22849025 original size:20 final size:20
Alignment explanation
Indices: 22849000--22849038 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
22848990 TGATTTATTT
22849000 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
22849020 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
22849039 GAAGAAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:22858727 original size:41 final size:41
Alignment explanation
Indices: 22858668--22858949 Score: 268
Period size: 41 Copynumber: 6.8 Consensus size: 41
22858658 GGATCCCGGT
* * *
22858668 GGAATCAGCACTTGGCAACCACCTTATAATCAATGATACAG
1 GGAATCAGCACTTAGCAACCACCTTACAATCAATGATACGG
* *
22858709 GGAATCAGCA-TATAGCAACC-CCTTTCACAATCAAGGATGCGG
1 GGAATCAGCACT-TAGCAACCACC-TT-ACAATCAATGATACGG
* *
22858751 TGGAATTAGCACTTAGCAGCCACCTTACAATCAATGATACGG
1 -GGAATCAGCACTTAGCAACCACCTTACAATCAATGATACGG
* *
22858793 GGAATCAGCACATAGCAACC-CCTTTCACAATCAAGGATACGG
1 GGAATCAGCACTTAGCAACCACC-TT-ACAATCAATGATACGG
* *
22858835 TGGAATCAGCACTTAGCAACCACCTTATAATAAATGATACGG
1 -GGAATCAGCACTTAGCAACCACCTTACAATCAATGATACGG
* * *** * *
22858877 GGAATCAGCACATAGCAACC-CTTTTTTGATCAATGATTCGA
1 GGAATCAGCACTTAGCAACCAC-CTTACAATCAATGATACGG
* * *
22858918 GGAATCTGTACTTAGCAACC-CCTTACATTCAA
1 GGAATCAGCACTTAGCAACCACCTTACAATCAA
22858950 AGAATCCCAG
Statistics
Matches: 198, Mismatches: 32, Indels: 23
0.78 0.13 0.09
Matches are distributed among these distances:
40 12 0.06
41 88 0.44
42 54 0.27
43 39 0.20
44 5 0.03
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (41 bp):
GGAATCAGCACTTAGCAACCACCTTACAATCAATGATACGG
Found at i:22858768 original size:43 final size:43
Alignment explanation
Indices: 22858619--22858896 Score: 270
Period size: 41 Copynumber: 6.6 Consensus size: 43
22858609 TAACCGTTAC
* * ***
22858619 ACGGTGGAATCAGCAGTTAGCAACCACC-TCATGTTCAAAGGAT
1 ACGGTGGAATCAGCACTTAGCAACCACCTTTACAATC-AAGGAT
* * * *
22858662 CCCGGTGGAATCAGCACTTGGCAACCACC-TTATAATCAATGAT
1 -ACGGTGGAATCAGCACTTAGCAACCACCTTTACAATCAAGGAT
*
22858705 ACAG-GGAATCAGCA-TATAGCAACC-CCTTTCACAATCAAGGAT
1 ACGGTGGAATCAGCACT-TAGCAACCACCTTT-ACAATCAAGGAT
* * * *
22858747 GCGGTGGAATTAGCACTTAGCAGCCACC-TTACAATCAATGAT
1 ACGGTGGAATCAGCACTTAGCAACCACCTTTACAATCAAGGAT
*
22858789 ACGG-GGAATCAGCACATAGCAACC-CCTTTCACAATCAAGGAT
1 ACGGTGGAATCAGCACTTAGCAACCACCTTT-ACAATCAAGGAT
* * *
22858831 ACGGTGGAATCAGCACTTAGCAACCACC-TTATAATAAATGAT
1 ACGGTGGAATCAGCACTTAGCAACCACCTTTACAATCAAGGAT
*
22858873 ACGG-GGAATCAGCACATAGCAACC
1 ACGGTGGAATCAGCACTTAGCAACC
22858897 CTTTTTTGAT
Statistics
Matches: 197, Mismatches: 27, Indels: 23
0.80 0.11 0.09
Matches are distributed among these distances:
40 5 0.03
41 57 0.29
42 56 0.28
43 44 0.22
44 35 0.18
ACGTcount: A:0.35, C:0.26, G:0.20, T:0.20
Consensus pattern (43 bp):
ACGGTGGAATCAGCACTTAGCAACCACCTTTACAATCAAGGAT
Found at i:22858777 original size:84 final size:84
Alignment explanation
Indices: 22858664--22858897 Score: 396
Period size: 84 Copynumber: 2.8 Consensus size: 84
22858654 CAAAGGATCC
* * *
22858664 CGGTGGAATCAGCACTTGGCAACCACCTTATAATCAATGATACAGGGAATCAGCATATAGCAACC
1 CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
*
22858729 CCTTTCACAATCAAGGATG
66 CCTTTCACAATCAAGGATA
* * *
22858748 CGGTGGAATTAGCACTTAGCAGCCACCTTACAATCAATGATACGGGGAATCAGCACATAGCAACC
1 CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
22858813 CCTTTCACAATCAAGGATA
66 CCTTTCACAATCAAGGATA
*
22858832 CGGTGGAATCAGCACTTAGCAACCACCTTATAATAAATGATACGGGGAATCAGCACATAGCAACC
1 CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
22858897 C
66 C
22858898 TTTTTTGATC
Statistics
Matches: 139, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
84 139 1.00
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (84 bp):
CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
CCTTTCACAATCAAGGATA
Found at i:22859667 original size:18 final size:18
Alignment explanation
Indices: 22859644--22859682 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
22859634 ATTGATTCTT
*
22859644 TTCTTTCTTTTC-GATTTC
1 TTCTTTATTTTCTG-TTTC
22859662 TTCTTTATTTTCTGTTTC
1 TTCTTTATTTTCTGTTTC
22859680 TTC
1 TTC
22859683 AATATTAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 18 0.95
19 1 0.05
ACGTcount: A:0.05, C:0.21, G:0.05, T:0.69
Consensus pattern (18 bp):
TTCTTTATTTTCTGTTTC
Found at i:22860375 original size:3 final size:3
Alignment explanation
Indices: 22860367--22860419 Score: 52
Period size: 3 Copynumber: 17.7 Consensus size: 3
22860357 ACTATTTTCT
* * * * * *
22860367 TTA TTA TTA TTG TTA TTA TTA TTA ATG TTA CTA TAA TTA TTA GTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
22860415 TTA TT
1 TTA TT
22860420 TGTATTAGTT
Statistics
Matches: 38, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.32, C:0.02, G:0.06, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:22865785 original size:17 final size:17
Alignment explanation
Indices: 22865753--22865788 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
22865743 TTGAGTTTCA
**
22865753 AAAAAAAAGATGAAAAG
1 AAAAAAAAGAAAAAAAG
22865770 AAAAAAAAGAAAAAAAG
1 AAAAAAAAGAAAAAAAG
22865787 AA
1 AA
22865789 GAAGAGGGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (17 bp):
AAAAAAAAGAAAAAAAG
Found at i:22865913 original size:83 final size:82
Alignment explanation
Indices: 22865713--22865913 Score: 203
Period size: 83 Copynumber: 2.4 Consensus size: 82
22865703 GAAGGAGAAG
*
22865713 GGACCAACGTGAAAACCCACAAAGGGCGCTTTGAGTTTCAAAAAAAAAGATGAAAAGAAAAAAAA
1 GGACCAACGTGAAAACCCGCAAAGGGCGCTTTGAG-TTCAAAAAAAAAGATGAAAAGAAAAAAAA
* *
22865778 GAAAAAAAGAAGAAGAGG
65 GAAAAAAAGAAAAAGAGA
* * * ** * * *
22865796 GGATCAAGGTGAAAACCTGCAAATAGCACTTTGAG-TC-AAAAAAATGATGAAGATGAAAATGAA
1 GGACCAACGTGAAAACCCGCAAAGGGCGCTTTGAGTTCAAAAAAAAAGATGAA-AAGAAAA--AA
22865859 AA-AAGAAAAAGAAAAAGGAGA
63 AAGAA-AAAAAGAAAAA-GAGA
* *
22865880 GG-CCAATGTGAAAACCCGCAAAGGGCGCCTTGAG
1 GGACCAACGTGAAAACCCGCAAAGGGCGCTTTGAG
22865914 ACCAAAGGGG
Statistics
Matches: 95, Mismatches: 18, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
80 13 0.14
81 8 0.08
82 2 0.02
83 67 0.71
84 5 0.05
ACGTcount: A:0.51, C:0.13, G:0.24, T:0.12
Consensus pattern (82 bp):
GGACCAACGTGAAAACCCGCAAAGGGCGCTTTGAGTTCAAAAAAAAAGATGAAAAGAAAAAAAAG
AAAAAAAGAAAAAGAGA
Found at i:22867222 original size:44 final size:43
Alignment explanation
Indices: 22867161--22867401 Score: 142
Period size: 44 Copynumber: 5.5 Consensus size: 43
22867151 GCGAAGTAGA
*
22867161 TTGAAGACACCAGTCTTGCCTCCCTCGGTTGTAGTGGAGCAGG
1 TTGAAGATACCAGTCTTGCCTCCCTCGGTTGTAGTGGAGCAGG
* * * ***** * * *
22867204 TTGAACATACCAGATCTTGCCTTCTTGCACCAATAGCGAAGCAGA
1 TTGAAGATACCAG-TCTTGCCTCCCT-CGGTTGTAGTGGAGCAGG
* * *
22867249 TCGAAGACACCAGCCTTGCCTCCCTCGGTTGTAGTGGAGCAGG
1 TTGAAGATACCAGTCTTGCCTCCCTCGGTTGTAGTGGAGCAGG
* * * * *** * * * *
22867292 ATAAAGATAGCAGATCTTGCCTTCCT-GCAACGACAGCGAAGCAGA
1 TTGAAGATACCAG-TCTTGCCTCCCTCG-GTTG-TAGTGGAGCAGG
* * * *
22867337 TCGAAGACACCAGTCTTGCCTCCCTCGGTTGCAGTGGAGTAGG
1 TTGAAGATACCAGTCTTGCCTCCCTCGGTTGTAGTGGAGCAGG
*
22867380 TTGAAGATAACAGATCTTGCCT
1 TTGAAGATACCAG-TCTTGCCT
22867402 TCCTGCATCG
Statistics
Matches: 135, Mismatches: 56, Indels: 13
0.66 0.27 0.06
Matches are distributed among these distances:
43 48 0.36
44 50 0.37
45 37 0.27
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.23
Consensus pattern (43 bp):
TTGAAGATACCAGTCTTGCCTCCCTCGGTTGTAGTGGAGCAGG
Found at i:22867278 original size:88 final size:88
Alignment explanation
Indices: 22867117--22867625 Score: 615
Period size: 88 Copynumber: 5.8 Consensus size: 88
22867107 AACAAATCAG
* * * * *
22867117 TGAAGATAGCATATCTTGCCTTCCTGCACCGACAGCGAAGTAGATTGAAGACACCAGTCTTGCCT
1 TGAAGATAACAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
*
22867182 CCCTCGGTTGTAGTGGAGCAGGT
66 CCCTCGGTTGCAGTGGAGCAGGT
* * * * *
22867205 TGAACATACCAGATCTTGCCTTCTTGCACCAATAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
1 TGAAGATAACAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* *
22867270 CCCTCGGTTGTAGTGGAGCAGGA
66 CCCTCGGTTGCAGTGGAGCAGGT
* * * *
22867293 TAAAGATAGCAGATCTTGCCTTCCTGCAACGACAGCGAAGCAGATCGAAGACACCAGTCTTGCCT
1 TGAAGATAACAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
*
22867358 CCCTCGGTTGCAGTGGAGTAGGT
66 CCCTCGGTTGCAGTGGAGCAGGT
* * * *
22867381 TGAAGATAACAGATCTTGCCTTCCTGCATCGACAGCAAAGCAGATCGAAGATACCAACCTTGCCT
1 TGAAGATAACAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
*
22867446 CCCT-GAGTTGCAGTGGAGTAGGT
66 CCCTCG-GTTGCAGTGGAGCAGGT
* * * * * * * * *
22867469 TAAAGGTAGCAGACCTTACCTTCCTGTACTGACAGTGAAGCAGATCGAAGACACTAGCCTTGCCT
1 TGAAGATAACAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* *
22867534 CCCTGGGTTGCAGTGAAGCAGGT
66 CCCTCGGTTGCAGTGGAGCAGGT
* * ** * * * * *
22867557 TGAAAATAACAGATCTTGCCTTCCTGTACTAACGGTGAAGCAGAGCGAAGACCCCAGCCTTGTCT
1 TGAAGATAACAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
22867622 CCCT
66 CCCT
22867626 GACCAGCAGT
Statistics
Matches: 364, Mismatches: 55, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
87 1 0.00
88 362 0.99
89 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.23
Consensus pattern (88 bp):
TGAAGATAACAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
CCCTCGGTTGCAGTGGAGCAGGT
Found at i:22867443 original size:44 final size:44
Alignment explanation
Indices: 22867118--22867450 Score: 140
Period size: 44 Copynumber: 7.5 Consensus size: 44
22867108 ACAAATCAGT
* * * * *
22867118 GAAGATAGCATATCTTGCCTTCCTGCACCGACAGCGAAGTAGATT
1 GAAGATACCA-ATCTTGCCTCCCTGCATCGACAGCGAAGCAGATC
* * * * * * * * *
22867163 GAAGACACCAGTCTTGCCTCCCT-CGGTTG-TAGTGGAGCAGGTT
1 GAAGATACCAATCTTGCCTCCCTGC-ATCGACAGCGAAGCAGATC
* * * * * *
22867206 GAACATACCAGATCTTGCCTTCTTGCACCAATAGCGAAGCAGATC
1 GAAGATACCA-ATCTTGCCTCCCTGCATCGACAGCGAAGCAGATC
* ** * * * * *
22867251 GAAGACACCAGCCTTGCCTCCCT-CGGTTG-TAGTGGAGCAGGAT-
1 GAAGATACCAATCTTGCCTCCCTGC-ATCGACAGCGAAGCA-GATC
* * * *
22867294 AAAGATAGCAGATCTTGCCTTCCTGCAACGACAGCGAAGCAGATC
1 GAAGATACCA-ATCTTGCCTCCCTGCATCGACAGCGAAGCAGATC
* * * * * * * * *
22867339 GAAGACACCAGTCTTGCCTCCCT-CGGTTG-CAGTGGAGTAGGTT
1 GAAGATACCAATCTTGCCTCCCTGC-ATCGACAGCGAAGCAGATC
* * *
22867382 GAAGATAACAGATCTTGCCTTCCTGCATCGACAGCAAAGCAGATC
1 GAAGATACCA-ATCTTGCCTCCCTGCATCGACAGCGAAGCAGATC
*
22867427 GAAGATACCAACCTTGCCTCCCTG
1 GAAGATACCAATCTTGCCTCCCTG
22867451 AGTTGCAGTG
Statistics
Matches: 197, Mismatches: 77, Indels: 29
0.65 0.25 0.10
Matches are distributed among these distances:
43 52 0.26
44 85 0.43
45 60 0.30
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.22
Consensus pattern (44 bp):
GAAGATACCAATCTTGCCTCCCTGCATCGACAGCGAAGCAGATC
Found at i:22867669 original size:44 final size:44
Alignment explanation
Indices: 22867619--22868081 Score: 571
Period size: 44 Copynumber: 10.7 Consensus size: 44
22867609 CCCAGCCTTG
*
22867619 TCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGCCCTA
1 TCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTA
*
22867663 TCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCTTA
1 TCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTA
* * * *
22867707 GCTCCCTGAGCAGCTGTGGAATAGGTTGAAGATTGCAAGTCCTA
1 TCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTA
* * *
22867751 TCTACCTAACCAGCAGTGGAATAGGTTGAAGATTTTAAGTCCTA
1 TCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTA
* * **** *
22867795 GCTCTCTGACCAGCAACAAAATAGGTTGAAGATTCTAAGTCCTA
1 TCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTA
* *
22867839 GCTCCCTGACCAGCAATGGAATAGGTTGAAGATTGTAAGTCCTA
1 TCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTA
*** * *
22867883 TCTCCCTGACCAGCAGCAAAATAGGTTGAAGATTGTAACTGCTA
1 TCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTA
* *
22867927 TCTCCCTGACCAACAGTGGAATAGG-T--CGA----AAGTCCTA
1 TCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTA
* * * *
22867964 TCTCCTTGACCAACAGTGGAATAAGTTGAAGATTGCAAGTCCTA
1 TCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTA
* **
22868008 TCTCTCTGACCAGCAGTGGAATAGGTTGAAGATTACAAGTCCTA
1 TCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTA
* *
22868052 TCTCCCTGACCAGTAGTTGAATAGGTTGAA
1 TCTCCCTGACCAGCAGTGGAATAGGTTGAA
22868082 AATTACAAAT
Statistics
Matches: 359, Mismatches: 53, Indels: 14
0.84 0.12 0.03
Matches are distributed among these distances:
37 29 0.08
38 1 0.00
40 2 0.01
41 2 0.01
43 1 0.00
44 324 0.90
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (44 bp):
TCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTA
Found at i:22868010 original size:81 final size:81
Alignment explanation
Indices: 22867875--22868033 Score: 219
Period size: 81 Copynumber: 2.0 Consensus size: 81
22867865 TGAAGATTGT
* * * *
22867875 AAGTCCTATCTCCCTGACCAGCAGCAAAATAGGTTGAAGATTGTAACTGCTATCTCCCTGACCAA
1 AAGTCCTATCTCCCTGACCAACAGCAAAATAAGTTGAAGATTGCAACTCCTATCTCCCTGACCAA
22867940 CAGTGGAATAGGTCGA
66 CAGTGGAATAGGTCGA
* *** * * *
22867956 AAGTCCTATCTCCTTGACCAACAGTGGAATAAGTTGAAGATTGCAAGTCCTATCTCTCTGACCAG
1 AAGTCCTATCTCCCTGACCAACAGCAAAATAAGTTGAAGATTGCAACTCCTATCTCCCTGACCAA
22868021 CAGTGGAATAGGT
66 CAGTGGAATAGGT
22868034 TGAAGATTAC
Statistics
Matches: 67, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 67 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.25
Consensus pattern (81 bp):
AAGTCCTATCTCCCTGACCAACAGCAAAATAAGTTGAAGATTGCAACTCCTATCTCCCTGACCAA
CAGTGGAATAGGTCGA
Found at i:22868087 original size:44 final size:44
Alignment explanation
Indices: 22867956--22868145 Score: 210
Period size: 44 Copynumber: 4.4 Consensus size: 44
22867946 AATAGGTCGA
* * * * *
22867956 AAGTCCTATCTCCTTGACCAACAGTGGAATAAGTTGAAGATTGC
1 AAGTCCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAAATTAC
* *
22868000 AAGTCCTATCTCTCTGACCAGCAGTGGAATAGGTTGAAGATTAC
1 AAGTCCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAAATTAC
* *
22868044 AAGTCCTATCTCCCTGACCAGTAGTTGAATAGGTTGAAAATTAC
1 AAGTCCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAAATTAC
* * * *
22868088 AAATCC--TCTCCCTGGA-CATCAGCGGAATAGGTT-AAAATCAC
1 AAGTCCTATCTCCCT-GACCAGCAGTGGAATAGGTTGAAAATTAC
22868129 -AGATCCTATCTCCCTGA
1 AAG-TCCTATCTCCCTGA
22868146 AGTTGCAGTA
Statistics
Matches: 126, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
40 1 0.01
41 10 0.08
42 22 0.17
43 9 0.07
44 84 0.67
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (44 bp):
AAGTCCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAAATTAC
Found at i:22872214 original size:20 final size:20
Alignment explanation
Indices: 22872162--22872203 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
22872152 GGCTGTTACA
* *
22872162 CTAAATGAGCTACGAATGAG
1 CTAAGTGAGCTAGGAATGAG
22872182 CTAAGTGAGCTAGGAATGAG
1 CTAAGTGAGCTAGGAATGAG
22872202 CT
1 CT
22872204 CCTTGAGCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.36, C:0.14, G:0.29, T:0.21
Consensus pattern (20 bp):
CTAAGTGAGCTAGGAATGAG
Found at i:22886370 original size:100 final size:100
Alignment explanation
Indices: 22886259--22886443 Score: 253
Period size: 100 Copynumber: 1.9 Consensus size: 100
22886249 TGCAACAGCA
* *
22886259 AATCTTACTTCCCTGGCAATGTAGTGGAGCAGATTGAAGCTACGACAGCCAATCTTGTTTCCCCG
1 AATCTTACTTCCCTGGCAATATAGTGGAACAGATTGAAGCTACGACAGCCAATCTTGTTTCCCCG
*
22886324 ACATTGCAATTAAAAAGATTGAAGGCGCAATGGTG
66 ACATTCCAATTAAAAAGATTGAAGGCGCAATGGTG
* ** * ** **
22886359 AATCTTACTTCCTTGGCGGTATAGTGGAATAGATTGAAGCTACGATGGTGAATCTTGTTTCCCCG
1 AATCTTACTTCCCTGGCAATATAGTGGAACAGATTGAAGCTACGACAGCCAATCTTGTTTCCCCG
* *
22886424 ACATTCCAGTTAAACAGATT
66 ACATTCCAATTAAAAAGATT
22886444 AAAGATATCA
Statistics
Matches: 72, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
100 72 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (100 bp):
AATCTTACTTCCCTGGCAATATAGTGGAACAGATTGAAGCTACGACAGCCAATCTTGTTTCCCCG
ACATTCCAATTAAAAAGATTGAAGGCGCAATGGTG
Found at i:22886524 original size:44 final size:45
Alignment explanation
Indices: 22886456--22886787 Score: 145
Period size: 44 Copynumber: 7.6 Consensus size: 45
22886446 AGATATCAGG
** * *
22886456 TCTTATCTCCCT-AAGGTTAAAGTGGAGCAGACTGAATAAAG-AAG
1 TCTTATCTCCCTGAA-GTTGCAGTGGAGCAGACTGAAGAAAGCAAA
* * * **
22886500 TCTTATC-CCCTTGAAGTTGTAGTGGGGGAGACTGAAGATGGCAAA
1 TCTTATCTCCC-TGAAGTTGCAGTGGAGCAGACTGAAGAAAGCAAA
* * * * *
22886545 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTTAGGCGAA--TAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG-AAAGCAAA
* * ** * * *
22886589 TCCTATCTCCCTGTAGTTGCAGTGGAGTGGATTAAAGTATAG---A
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG-AAAGCAAA
* * * * * * * *
22886632 TCTTATCTCTCTTAAGTTGCAG-AGAGCAGA-T---CACATCTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGCAAA
* * * * *
22886672 TTTTATCTCCCTGAAGTTACAATGGAGCAGACTCAAGAAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGCAAA
* * * *
22886717 TCTTATCCCCCTGAAATTGCAGTGGGGCAGACT-ACATAAA-CAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGA-AGAAAGCAAA
* * *
22886761 TCTTGTCTCCCTAAAGTTGTAGTGGAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAG
22886788 TGGATTAGAG
Statistics
Matches: 211, Mismatches: 62, Indels: 30
0.70 0.20 0.10
Matches are distributed among these distances:
37 2 0.01
40 17 0.08
41 8 0.04
42 6 0.03
43 22 0.10
44 86 0.41
45 67 0.32
46 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (45 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGCAAA
Found at i:22888860 original size:17 final size:18
Alignment explanation
Indices: 22888838--22888871 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
22888828 GTCATTGTTT
22888838 ATTTTTTATTTA-TATTA
1 ATTTTTTATTTACTATTA
22888855 ATTTTTTATTTACTATT
1 ATTTTTTATTTACTATT
22888872 TATATTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (18 bp):
ATTTTTTATTTACTATTA
Found at i:22893786 original size:29 final size:29
Alignment explanation
Indices: 22893723--22893790 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
22893713 TAATCAACCG
*
22893723 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
22893752 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
22893781 CGCACACTTA
1 CGCACACTTA
22893791 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:22893960 original size:29 final size:29
Alignment explanation
Indices: 22893898--22893964 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 29
22893888 AATCAACCGT
22893898 GCACACTTAGTGCCATGCACTTTAAACTC
1 GCACACTTAGTGCCATGCACTTTAAACTC
* **
22893927 ACACACTTAGTGCCATGCA-TTTCAAGTTC
1 GCACACTTAGTGCCATGCACTTT-AAACTC
22893956 GCACACTTA
1 GCACACTTA
22893965 CCTTTTCCTC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.30, G:0.13, T:0.28
Consensus pattern (29 bp):
GCACACTTAGTGCCATGCACTTTAAACTC
Found at i:22894105 original size:29 final size:30
Alignment explanation
Indices: 22894066--22894144 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
22894056 CTTAATAATC
22894066 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
22894096 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
22894125 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
22894145 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:22894138 original size:174 final size:174
Alignment explanation
Indices: 22893612--22894113 Score: 932
Period size: 174 Copynumber: 2.9 Consensus size: 174
22893602 AACTCAAGGT
* *
22893612 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
22893677 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
22893742 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
22893786 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* * *
22893851 GAAAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACCGTGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
22893916 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
22893960 ACTTACCTTTTCCTCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
22894025 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
*
22894090 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
22894114 TGTACAATTT
Statistics
Matches: 317, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 317 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:22907328 original size:22 final size:20
Alignment explanation
Indices: 22907303--22907347 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 20
22907293 AACCTTTTTT
22907303 TTTAATTCACTTTTTTTTTTAA
1 TTTAATTC-C-TTTTTTTTTAA
*
22907325 TTTACTTCCTTTTTTTTTAA
1 TTTAATTCCTTTTTTTTTAA
22907345 TTT
1 TTT
22907348 CGTATATATG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 14 0.64
21 1 0.05
22 7 0.32
ACGTcount: A:0.18, C:0.11, G:0.00, T:0.71
Consensus pattern (20 bp):
TTTAATTCCTTTTTTTTTAA
Found at i:22907343 original size:20 final size:19
Alignment explanation
Indices: 22907295--22907347 Score: 74
Period size: 17 Copynumber: 2.8 Consensus size: 19
22907285 TGAAACACAA
*
22907295 CCTTTTTTTTTAATTCACT
1 CCTTTTTTTTTAATTTACT
22907314 --TTTTTTTTTAATTTACTT
1 CCTTTTTTTTTAATTTAC-T
22907332 CCTTTTTTTTTAATTT
1 CCTTTTTTTTTAATTT
22907348 CGTATATATG
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 15 0.50
18 1 0.03
20 14 0.47
ACGTcount: A:0.15, C:0.13, G:0.00, T:0.72
Consensus pattern (19 bp):
CCTTTTTTTTTAATTTACT
Found at i:22910555 original size:20 final size:20
Alignment explanation
Indices: 22910527--22910568 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
22910517 TAAATGCAAA
* *
22910527 CTAAATGAGGTAGGAATGAG
1 CTAAATGAGCTAGGAACGAG
*
22910547 CTAAGTGAGCTAGGAACGAG
1 CTAAATGAGCTAGGAACGAG
22910567 CT
1 CT
22910569 CGTTGAGCTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.12, G:0.33, T:0.19
Consensus pattern (20 bp):
CTAAATGAGCTAGGAACGAG
Found at i:22912019 original size:11 final size:11
Alignment explanation
Indices: 22912003--22912034 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
22911993 ATCTACAAAC
22912003 AAACACATTAA
1 AAACACATTAA
22912014 AAACACATT--
1 AAACACATTAA
22912023 AAACACATTAA
1 AAACACATTAA
22912034 A
1 A
22912035 CACATTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 9 0.47
11 10 0.53
ACGTcount: A:0.62, C:0.19, G:0.00, T:0.19
Consensus pattern (11 bp):
AAACACATTAA
Found at i:22912028 original size:9 final size:9
Alignment explanation
Indices: 22912003--22912040 Score: 58
Period size: 9 Copynumber: 4.0 Consensus size: 9
22911993 ATCTACAAAC
22912003 AAACACATT
1 AAACACATT
22912012 AAAAACACATT
1 --AAACACATT
22912023 AAACACATT
1 AAACACATT
22912032 AAACACATT
1 AAACACATT
22912041 TTAACACATA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 18 0.67
11 9 0.33
ACGTcount: A:0.58, C:0.21, G:0.00, T:0.21
Consensus pattern (9 bp):
AAACACATT
Found at i:22912044 original size:11 final size:10
Alignment explanation
Indices: 22912003--22912049 Score: 53
Period size: 9 Copynumber: 4.8 Consensus size: 10
22911993 ATCTACAAAC
*
22912003 AAACACATTAA
1 AAACACATT-T
22912014 AAACACA-TT
1 AAACACATTT
22912023 AAACACA-TT
1 AAACACATTT
22912032 AAACACATTT
1 AAACACATTT
*
22912042 TAACACAT
1 AAACACAT
22912050 ATTAGACTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
9 16 0.48
10 10 0.30
11 7 0.21
ACGTcount: A:0.55, C:0.21, G:0.00, T:0.23
Consensus pattern (10 bp):
AAACACATTT
Found at i:22912180 original size:19 final size:19
Alignment explanation
Indices: 22912153--22912245 Score: 70
Period size: 19 Copynumber: 5.1 Consensus size: 19
22912143 TTATTCTAGC
*
22912153 AACTAAATTAACTAAGATG
1 AACTTAATTAACTAAGATG
22912172 AACTTAATTAACTAAGATG
1 AACTTAATTAACTAAGATG
* * * *
22912191 -A-GTAATTTATTCCAGCA-G
1 AACTTAATTAACT-AAG-ATG
22912209 --CTTAATTAACTAAGATG
1 AACTTAATTAACTAAGATG
* *
22912226 AACTCAGTTAACTAAGATG
1 AACTTAATTAACTAAGATG
22912245 A
1 A
22912246 GTAATTTATA
Statistics
Matches: 57, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
16 1 0.02
17 10 0.18
18 11 0.19
19 35 0.61
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.30
Consensus pattern (19 bp):
AACTTAATTAACTAAGATG
Found at i:22912216 original size:54 final size:54
Alignment explanation
Indices: 22912143--22912268 Score: 189
Period size: 54 Copynumber: 2.3 Consensus size: 54
22912133 CAACAATAAA
* *
22912143 TTATTCTAGCAACTAAATTAACTAAGATGAACTTAATTAACTAAGATGAGTAAT
1 TTATTCCAGCAACTAAATTAACTAAGATGAACTCAATTAACTAAGATGAGTAAT
* * *
22912197 TTATTCCAGCAGCTTAATTAACTAAGATGAACTCAGTTAACTAAGATGAGTAAT
1 TTATTCCAGCAACTAAATTAACTAAGATGAACTCAATTAACTAAGATGAGTAAT
* *
22912251 TTATACCAGCGACTAAAT
1 TTATTCCAGCAACTAAAT
22912269 ACTTATTCCA
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 63 1.00
ACGTcount: A:0.41, C:0.14, G:0.13, T:0.32
Consensus pattern (54 bp):
TTATTCCAGCAACTAAATTAACTAAGATGAACTCAATTAACTAAGATGAGTAAT
Found at i:22914052 original size:10 final size:9
Alignment explanation
Indices: 22914036--22914074 Score: 51
Period size: 9 Copynumber: 4.0 Consensus size: 9
22914026 ACTCTCAGAA
22914036 TAAAAAAAT
1 TAAAAAAAT
22914045 TCAAAAAAAAT
1 T--AAAAAAAT
22914056 TAAAAAAAGT
1 TAAAAAAA-T
22914066 TAAAAAAAT
1 TAAAAAAAT
22914075 ATTAAATTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
9 9 0.33
10 9 0.33
11 9 0.33
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (9 bp):
TAAAAAAAT
Found at i:22914053 original size:11 final size:10
Alignment explanation
Indices: 22914037--22914080 Score: 61
Period size: 10 Copynumber: 4.2 Consensus size: 10
22914027 CTCTCAGAAT
22914037 AAAAAAATTCA
1 AAAAAAATT-A
22914048 AAAAAAATTA
1 AAAAAAATTA
*
22914058 AAAAAAGTTA
1 AAAAAAATTA
22914068 AAAAAATATTA
1 AAAAAA-ATTA
22914079 AA
1 AA
22914081 TTAAAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
10 16 0.53
11 14 0.47
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.20
Consensus pattern (10 bp):
AAAAAAATTA
Found at i:22914063 original size:21 final size:21
Alignment explanation
Indices: 22914037--22914080 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
22914027 CTCTCAGAAT
22914037 AAAAAAATTCAAAAAAA-ATTA
1 AAAAAAATT-AAAAAAATATTA
*
22914058 AAAAAAGTTAAAAAAATATTA
1 AAAAAAATTAAAAAAATATTA
22914079 AA
1 AA
22914081 TTAAAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.20
Consensus pattern (21 bp):
AAAAAAATTAAAAAAATATTA
Found at i:22915432 original size:21 final size:21
Alignment explanation
Indices: 22915402--22915465 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 21
22915392 AATGATTATC
*
22915402 GAAAAAGAAAGAGTGGAAAAA
1 GAAAATGAAAGAGTGGAAAAA
* ***
22915423 GAAATTGAAAGAAAAGAAAAA
1 GAAAATGAAAGAGTGGAAAAA
22915444 GAAAATG-AA-AGTGG-AAAA
1 GAAAATGAAAGAGTGGAAAAA
22915462 GAAA
1 GAAA
22915466 GAGAGCCTGA
Statistics
Matches: 34, Mismatches: 9, Indels: 3
0.74 0.20 0.07
Matches are distributed among these distances:
18 8 0.24
19 2 0.06
20 2 0.06
21 22 0.65
ACGTcount: A:0.67, C:0.00, G:0.25, T:0.08
Consensus pattern (21 bp):
GAAAATGAAAGAGTGGAAAAA
Found at i:22915479 original size:17 final size:15
Alignment explanation
Indices: 22915457--22915504 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 15
22915447 AATGAAAGTG
22915457 GAAAAGAAAGAGAGCCT
1 GAAAAGAAAGAGAG--T
**
22915474 GAAAAGAAATCGAGT
1 GAAAAGAAAGAGAGT
22915489 GAAAAAGAAAGAGAGT
1 G-AAAAGAAAGAGAGT
22915505 TTGCAAAAGA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
15 2 0.08
16 12 0.46
17 12 0.46
ACGTcount: A:0.56, C:0.06, G:0.29, T:0.08
Consensus pattern (15 bp):
GAAAAGAAAGAGAGT
Found at i:22915495 original size:33 final size:33
Alignment explanation
Indices: 22915453--22915524 Score: 101
Period size: 33 Copynumber: 2.2 Consensus size: 33
22915443 AGAAAATGAA
*
22915453 AGTGGAAAAGAAAGAGAGCCTG-AAAAGAAATCG
1 AGTGAAAAAGAAAGAGAGCCTGCAAAAGAAA-CG
**
22915486 AGTGAAAAAGAAAGAGAGTTTGCAAAAGAAACG
1 AGTGAAAAAGAAAGAGAGCCTGCAAAAGAAACG
22915519 AGTGAA
1 AGTGAA
22915525 GAGAGTAATC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
33 27 0.77
34 8 0.23
ACGTcount: A:0.53, C:0.07, G:0.29, T:0.11
Consensus pattern (33 bp):
AGTGAAAAAGAAAGAGAGCCTGCAAAAGAAACG
Found at i:22922269 original size:19 final size:19
Alignment explanation
Indices: 22922242--22922284 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
22922232 TTATTCCAAC
*
22922242 AACTAAATTAGCTAAGATG
1 AACTAAATTAACTAAGATG
*
22922261 AACTTAATTAACTAAGATG
1 AACTAAATTAACTAAGATG
22922280 -ACTAA
1 AACTAA
22922285 TTTATTCCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 4 0.19
19 17 0.81
ACGTcount: A:0.49, C:0.12, G:0.12, T:0.28
Consensus pattern (19 bp):
AACTAAATTAACTAAGATG
Found at i:22922294 original size:54 final size:54
Alignment explanation
Indices: 22922232--22922356 Score: 162
Period size: 54 Copynumber: 2.3 Consensus size: 54
22922222 CAATAATAAA
* *
22922232 TTATTCCAACAACTAAATTAGCTAAGAT-GAACTTAATTAACTAAGATGACTAAT
1 TTATTCCAACAACTAAATTAACTAAGATGGAA-TCAATTAACTAAGATGACTAAT
* * * *
22922286 TTATTCCAATAGCTTAATTAACTAAGATGGAATCAATTAACTAAGATGAGTAAT
1 TTATTCCAACAACTAAATTAACTAAGATGGAATCAATTAACTAAGATGACTAAT
**
22922340 TTATTCCAGGAACTAAA
1 TTATTCCAACAACTAAA
22922357 ATACTTATTC
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
54 57 0.95
55 3 0.05
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (54 bp):
TTATTCCAACAACTAAATTAACTAAGATGGAATCAATTAACTAAGATGACTAAT
Found at i:22934494 original size:30 final size:30
Alignment explanation
Indices: 22934460--22934768 Score: 206
Period size: 30 Copynumber: 10.4 Consensus size: 30
22934450 TCATCGATCA
* *
22934460 ATGAAAAGGGATAGCTTTGGCTATCGAATT
1 ATGAAAAGGGATAGCTTCGACTATCGAATT
* * **
22934490 ATGAAAATGGATGGCTTCGGTTATCGAATT
1 ATGAAAAGGGATAGCTTCGACTATCGAATT
* * * *
22934520 ATGAAAAAGGATAG-TGACGACCATC-AATA
1 ATGAAAAGGGATAGCT-TCGACTATCGAATT
* * *
22934549 ATGAAAAGGGAT-GGTGACGACCATCGGAA-T
1 ATGAAAAGGGATAGCT-TCGACTATC-GAATT
* * *
22934579 ATGAAAAGGGATAGCTCCGACT-TTGAAAT
1 ATGAAAAGGGATAGCTTCGACTATCGAATT
* * * *
22934608 ATGAAAAGCGTTATCTTCGACTATGGAATT
1 ATGAAAAGGGATAGCTTCGACTATCGAATT
* * * * * *
22934638 ATGAAAAAGCAT-GGTGACGACCATCAAATT
1 ATGAAAAGGGATAGCT-TCGACTATCGAATT
*
22934668 ATGAAAAGGGATAGCTTC-AGCTATCGAATA
1 ATGAAAAGGGATAGCTTCGA-CTATCGAATT
* *
22934698 ATGAAAAGGGAT-G-GT-GACAATGATCAAATT
1 ATGAAAAGGGATAGCTTCGAC--T-ATCGAATT
*
22934728 ATGAAAAGGGATAGCTTCGACTATCGAACT
1 ATGAAAAGGGATAGCTTCGACTATCGAATT
22934758 ATGAAAAGGGA
1 ATGAAAAGGGA
22934769 ACGTGACAAC
Statistics
Matches: 216, Mismatches: 46, Indels: 34
0.73 0.16 0.11
Matches are distributed among these distances:
27 1 0.00
28 6 0.03
29 50 0.23
30 147 0.68
31 8 0.04
32 1 0.00
33 3 0.01
ACGTcount: A:0.39, C:0.12, G:0.25, T:0.24
Consensus pattern (30 bp):
ATGAAAAGGGATAGCTTCGACTATCGAATT
Found at i:22944072 original size:21 final size:21
Alignment explanation
Indices: 22944046--22944089 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
22944036 TAAGACCATA
22944046 CCATACCATTTCATACAAATT
1 CCATACCATTTCATACAAATT
* *
22944067 CCATACCATTTCGTACCAATT
1 CCATACCATTTCATACAAATT
22944088 CC
1 CC
22944090 CAAATACCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.32, C:0.34, G:0.02, T:0.32
Consensus pattern (21 bp):
CCATACCATTTCATACAAATT
Found at i:22944420 original size:18 final size:18
Alignment explanation
Indices: 22944399--22944434 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
22944389 AAAAAGGAGT
*
22944399 TCGAAAAAAAAATTAAAA
1 TCGAAAAAAAAATCAAAA
22944417 TCGAAAAAAAAATCAAAA
1 TCGAAAAAAAAATCAAAA
22944435 AAAAATTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.06, T:0.14
Consensus pattern (18 bp):
TCGAAAAAAAAATCAAAA
Found at i:22944430 original size:12 final size:12
Alignment explanation
Indices: 22944413--22944452 Score: 55
Period size: 11 Copynumber: 3.3 Consensus size: 12
22944403 AAAAAAAATT
22944413 AAAATCGAAAAA
1 AAAATCGAAAAA
22944425 AAAATC-AAAAA
1 AAAATCGAAAAA
*
22944436 AAAATTGAAAAGA
1 AAAATCGAAAA-A
22944449 AAAA
1 AAAA
22944453 AAAAATTGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
11 10 0.40
12 10 0.40
13 5 0.20
ACGTcount: A:0.78, C:0.05, G:0.07, T:0.10
Consensus pattern (12 bp):
AAAATCGAAAAA
Found at i:22944458 original size:29 final size:28
Alignment explanation
Indices: 22944402--22944456 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 28
22944392 AAGGAGTTCG
22944402 AAAAAAAAATTAAAATCGAAAAAAAAATC
1 AAAAAAAAATTAAAA-CGAAAAAAAAATC
22944431 AAAAAAAAATTGAAAA-GAAAAAAAAA
1 AAAAAAAAATT-AAAACGAAAAAAAAA
22944457 ATTGCATACA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
28 10 0.40
29 11 0.44
30 4 0.16
ACGTcount: A:0.80, C:0.04, G:0.05, T:0.11
Consensus pattern (28 bp):
AAAAAAAAATTAAAACGAAAAAAAAATC
Found at i:22946664 original size:17 final size:18
Alignment explanation
Indices: 22946623--22946671 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
22946613 AAGAGCGAAA
22946623 ACAAAAGAAAAGAAAAATG
1 ACAAAA-AAAAGAAAAATG
*
22946642 AAAAAAAAAAGAAAAAT-
1 ACAAAAAAAAGAAAAATG
* *
22946659 TCAAAAAAGAGAA
1 ACAAAAAAAAGAA
22946672 TAAAAAGAGA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
17 10 0.38
18 11 0.42
19 5 0.19
ACGTcount: A:0.78, C:0.04, G:0.12, T:0.06
Consensus pattern (18 bp):
ACAAAAAAAAGAAAAATG
Found at i:22946664 original size:18 final size:18
Alignment explanation
Indices: 22946624--22946666 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
22946614 AGAGCGAAAA
*
22946624 CAAAAGAAAAGAAAAATG
1 CAAAAAAAAAGAAAAATG
* *
22946642 AAAAAAAAAAGAAAAATT
1 CAAAAAAAAAGAAAAATG
22946660 CAAAAAA
1 CAAAAAA
22946667 GAGAATAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.79, C:0.05, G:0.09, T:0.07
Consensus pattern (18 bp):
CAAAAAAAAAGAAAAATG
Found at i:22960789 original size:40 final size:40
Alignment explanation
Indices: 22960759--22960966 Score: 292
Period size: 40 Copynumber: 5.2 Consensus size: 40
22960749 GGACTAAGAT
* * * *
22960759 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
*
22960799 CCGAAGGCATTCGTGTGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
*
22960839 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
22960879 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* * * * *
22960919 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
22960958 CCGAAGGCA
1 CCGAAGGCA
22960967 CTTGAACGAG
Statistics
Matches: 155, Mismatches: 13, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 32 0.21
40 123 0.79
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
Found at i:22960843 original size:80 final size:80
Alignment explanation
Indices: 22960706--22960966 Score: 294
Period size: 80 Copynumber: 3.3 Consensus size: 80
22960696 TTGAATGCTG
* * * * * **
22960706 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTG-TGAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCCT
*
22960769 TTGTGCGAGATACTAAA
64 TTGTGCGAGTTACTAAA
* * *
22960786 TCCGGGTTAAGTCCCGAAGGCATTCGTGTGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGTGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
**
22960851 GTGCGAGTTGTTAAA
66 GTGCGAGTTACTAAA
* * * * *
22960866 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGTGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
22960930 GTGTGAGTTACTAAA
66 GTGCGAGTTACTAAA
* *
22960945 ACCGGGCTATGTCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCA
22960967 CTTGAACGAG
Statistics
Matches: 154, Mismatches: 25, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
79 33 0.21
80 116 0.75
81 5 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGTGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAAA
Found at i:22960989 original size:79 final size:80
Alignment explanation
Indices: 22960759--22961003 Score: 219
Period size: 80 Copynumber: 3.1 Consensus size: 80
22960749 GGACTAAGAT
* * * * * *** * *
22960759 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGTGAGTTA-TT
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAG-GAGCT
22960823 AAATCCGGGTTAAGTC
65 AAATCCGGGTTAAGTC
** * * ** ** *
22960839 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
22960904 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* *
22960919 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCACTT-GAACGAGGAGCT
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCA-TTCGAACGAGGAGCT
* * *
22960982 ATATCC-GGTTAAATT
65 AAATCCGGGTTAAGTC
22960997 CCGAAGG
1 CCGAAGG
22961004 TACGTGATTT
Statistics
Matches: 140, Mismatches: 23, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
78 13 0.09
79 44 0.31
80 83 0.59
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:22970447 original size:25 final size:25
Alignment explanation
Indices: 22970413--22970471 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
22970403 CCTAAATTTC
*
22970413 AATTTAATTATCTAAT-TTTTCA-ATT
1 AATTAAATTAT-TAATATTTT-ATATT
*
22970438 TATTAAATTATTAATATTTTATATT
1 AATTAAATTATTAATATTTTATATT
22970463 AATTAAATT
1 AATTAAATT
22970472 TTTGTGAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 5 0.17
25 24 0.83
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (25 bp):
AATTAAATTATTAATATTTTATATT
Found at i:22978429 original size:15 final size:16
Alignment explanation
Indices: 22978409--22978438 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
22978399 AATTTTAAAG
22978409 TAGTGAAAA-AATTAT
1 TAGTGAAAATAATTAT
22978424 TAGTGAAAATAATTA
1 TAGTGAAAATAATTA
22978439 ATTTGGCTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.53, C:0.00, G:0.13, T:0.33
Consensus pattern (16 bp):
TAGTGAAAATAATTAT
Found at i:22978469 original size:11 final size:11
Alignment explanation
Indices: 22978450--22978479 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
22978440 TTTGGCTCGA
*
22978450 AAAAGAATTTT
1 AAAATAATTTT
22978461 AAAATAATTTT
1 AAAATAATTTT
22978472 AAAATAAT
1 AAAATAAT
22978480 AAATTACTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (11 bp):
AAAATAATTTT
Found at i:22984733 original size:96 final size:94
Alignment explanation
Indices: 22984605--22985496 Score: 1433
Period size: 96 Copynumber: 9.3 Consensus size: 94
22984595 TATTTGAATA
22984605 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
22984670 TATATGTGATAAGGCCTAATGGCCGATGTGATG
62 TATATGTGATAAGGCCTAATGGCCGATGTGATG
22984703 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
22984768 TGTGATAAGGCCGAATGGCCAATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
22984797 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
22984862 TATGTGATAAGGCCTAATTGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22984893 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
22984958 TATATGTGATAAGGCCTAATGGCCGATGTGATG
62 TATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22984991 AATGTGAAAGTGTATATATGTGATAAGGCCAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGT
1 AATGTGAAAGTGTATATATGTGAT-A----AGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-
22985056 ATATATATGTGATAAGGCCTAATGGCCGATGTGATG
60 -TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22985092 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
22985157 TGTGATAAGGCCTAATGGCCGATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
* *
22985186 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
22985251 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
22985282 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
22985347 TGTGATAAGGCCTAATGGCCGATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
* *
22985376 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * *
22985441 TGTGATAGGGCCGAGTGGCCAACGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
* *
22985470 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
22985497 TCCCGAAGGG
Statistics
Matches: 756, Mismatches: 27, Indels: 26
0.93 0.03 0.03
Matches are distributed among these distances:
94 282 0.37
96 319 0.42
97 1 0.00
98 58 0.08
100 1 0.00
101 95 0.13
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:22984737 original size:47 final size:47
Alignment explanation
Indices: 22984605--22985496 Score: 1433
Period size: 47 Copynumber: 18.6 Consensus size: 47
22984595 TATTTGAATA
22984605 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
22984654 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
22984703 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22984750 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22984797 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22984846 AATGTGAAAGTGTATATATGTGATAAGGCCTAATTGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22984893 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
22984942 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22984991 AATGTGAAAGTGTATATATGTGATAAGGCCAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGAT-A----AGGCCTAATGGCCGATGTGATG
22985043 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22985092 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22985139 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22985186 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22985233 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22985282 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22985329 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22985376 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
22985423 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22985470 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
22985497 TCCCGAAGGG
Statistics
Matches: 800, Mismatches: 30, Indels: 28
0.93 0.03 0.03
Matches are distributed among these distances:
47 480 0.60
48 1 0.00
49 274 0.34
52 32 0.04
53 1 0.00
54 12 0.01
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:22984865 original size:143 final size:143
Alignment explanation
Indices: 22984605--22985496 Score: 1477
Period size: 143 Copynumber: 6.2 Consensus size: 143
22984595 TATTTGAATA
* *
22984605 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
22984670 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
64 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
22984735 ATGGCCGATGTGATG
129 ATGGCCGATGTGATG
22984750 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
22984815 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
22984880 TGCCGATGTGATG
131 GGCCGATGTGATG
22984893 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
22984958 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAG
64 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT-A----AG
* *
22985023 GCCGAATGGCCAATGTGATG
124 GCCTAATGGCCGATGTGATG
* *
22985043 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
22985106 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
64 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
22985171 ATGGCCGATGTGATG
129 ATGGCCGATGTGATG
22985186 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
22985251 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
22985316 AGCCGATGTGATG
131 GGCCGATGTGATG
* *
22985329 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * * * *
22985392 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
* *
22985457 GGCCAACGTGATG
131 GGCCGATGTGATG
* *
22985470 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
22985497 TCCCGAAGGG
Statistics
Matches: 711, Mismatches: 27, Indels: 22
0.94 0.04 0.03
Matches are distributed among these distances:
141 144 0.20
143 309 0.43
145 120 0.17
146 1 0.00
147 1 0.00
148 58 0.08
150 78 0.11
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (143 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
GGCCGATGTGATG
Found at i:22986350 original size:85 final size:85
Alignment explanation
Indices: 22986207--22986385 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
22986197 GGCCGGCCAT
22986207 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
22986272 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
22986292 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
22986357 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
22986377 GGGCATGGG
1 GAGCATGGG
22986386 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:22988627 original size:47 final size:49
Alignment explanation
Indices: 22988576--22989028 Score: 333
Period size: 47 Copynumber: 9.1 Consensus size: 49
22988566 TTAGGATTTT
* * *
22988576 ATGTGATGGATGTGAA-C-ATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACCGATACATATGTGTGATAAGGCCGAATGGCCA
*
22988623 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-CCG-ATACATATGTGTGATAAGGCCGAATGGCCA
** * * * * *
22988674 ATGTGATGAATGTGAATGTGATGA-ATGTGAACCCGTATATATATGTG-TGATAAGGCCGA
1 ATGTGATGAATGTGAA-CCGAT-ACATATG----TGT-GATA-A-G-GCCGA-ATGGCC-A
* * *
22988733 ATGGCCAATGTGATGAATGTGAA-C-ATGCGTATGTGTGATAAGGCCGAGTGGCCA
1 A-------TGTGATGAATGTGAACCGATACATATGTGTGATAAGGCCGAATGGCCA
* *
22988787 ATGTGATGAATGTGAACCTGCATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACC-G-ATACATATGTGTGATAAGGCCGAATGGCCA
* *
22988838 ATGTGATGAATGTGAA-C-ATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACCGATACATATGTGTGATAAGGCCGAATGGCCA
* *
22988885 ATGTGATGAATGTGAA-C-ATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACCGATACATATGTGTGATAAGGCCGAATGGCCA
* * * *
22988932 ATATGATGAATGTGAA-C-ATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACCGATACATATGTGTGATAAGGCCGAATGGCCA
* * * *
22988979 ATGTGATGAATGTGAA-C-ATGA-ATATATATGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACCGAT-ACATATGTGTGATAAGGCCGAATGGCCA
22989026 ATG
1 ATG
22989029 CGAAACGTGT
Statistics
Matches: 337, Mismatches: 40, Indels: 58
0.77 0.09 0.13
Matches are distributed among these distances:
47 189 0.56
48 1 0.00
49 1 0.00
50 7 0.02
51 86 0.26
54 4 0.01
55 8 0.02
56 4 0.01
57 4 0.01
58 9 0.03
59 4 0.01
63 5 0.01
66 15 0.04
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (49 bp):
ATGTGATGAATGTGAACCGATACATATGTGTGATAAGGCCGAATGGCCA
Found at i:22988693 original size:15 final size:15
Alignment explanation
Indices: 22988673--22988704 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
22988663 CCGAATGGCC
22988673 AATGTGATGAATGTG
1 AATGTGATGAATGTG
22988688 AATGTGATGAATGTG
1 AATGTGATGAATGTG
22988703 AA
1 AA
22988705 CCCGTATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.31, T:0.31
Consensus pattern (15 bp):
AATGTGATGAATGTG
Found at i:22988697 original size:66 final size:66
Alignment explanation
Indices: 22988622--22988755 Score: 268
Period size: 66 Copynumber: 2.0 Consensus size: 66
22988612 CCGAATGGCC
22988622 AATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGT
1 AATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGT
22988687 G
66 G
22988688 AATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGT
1 AATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGT
22988753 G
66 G
22988754 AA
1 AA
22988756 CATGCGTATG
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 68 1.00
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.28
Consensus pattern (66 bp):
AATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGT
G
Found at i:22988798 original size:98 final size:97
Alignment explanation
Indices: 22988688--22989028 Score: 496
Period size: 98 Copynumber: 3.6 Consensus size: 97
22988678 GATGAATGTG
22988688 AATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGT
1 AATGTGATGAATGTGAACCCG-ATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGT
*
22988753 GAACATGCGTATGTGTGATAAGGCCGAGTGGCC
65 GAACATGCGTATGTGTGATAAGGCCGAATGGCC
* *
22988786 AATGTGATGAATGTGAACCTGCATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGT
1 AATGTGATGAATGTGAACCCG-ATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGT
22988851 GAACATGCGTATGTGTGATAAGGCCGAATGGCC
65 GAACATGCGTATGTGTGATAAGGCCGAATGGCC
*** *
22988884 AATGTGATGAATGTGAA--C-ATGCGTATGTGTGATAAGGCCGAATGGCCAATATGATGAATGTG
1 AATGTGATGAATGTGAACCCGATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
* * *
22988946 AACATGCATATATGAGATAAGGCCGAATGGCC
66 AACATGCGTATGTGTGATAAGGCCGAATGGCC
** * *
22988978 AATGTGATGAATGTGAACATGA-ATATATATG-G-TAAGGCCGAATGGCTAATG
1 AATGTGATGAATGTGAACCCGATATATATGTGTGATAAGGCCGAATGGCCAATG
22989029 CGAAACGTGT
Statistics
Matches: 220, Mismatches: 20, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
94 102 0.46
95 1 0.00
96 5 0.02
97 1 0.00
98 111 0.50
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.26
Consensus pattern (97 bp):
AATGTGATGAATGTGAACCCGATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
AACATGCGTATGTGTGATAAGGCCGAATGGCC
Found at i:22988865 original size:23 final size:23
Alignment explanation
Indices: 22988838--22988912 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
22988828 CGAATGGCCA
22988838 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
22988861 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
22988885 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
22988908 ATGTG
1 ATGTG
22988913 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 16 0.43
24 11 0.30
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:22988877 original size:145 final size:141
Alignment explanation
Indices: 22988688--22989028 Score: 504
Period size: 145 Copynumber: 2.4 Consensus size: 141
22988678 GATGAATGTG
22988688 AATGTGATGAATGTGAACCCGTAT-ATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATG
1 AATGTGATGAATGTGAA--C--ATGA-ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATG
* * *
22988752 TGAACATGCGTATGTGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAACCTGCATATATATG
61 TGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATATGATGAATGTGAACATGC--ATATAT-
*
22988817 CGTGATAAGGCCGAATGGCC
123 -GAGATAAGGCCGAATGGCC
**
22988837 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 AATGTGATGAATGTGAACATGAATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
22988902 ATGCGTATGTGTGATAAGGCCGAATGGCCAATATGATGAATGTGAACATGCATATATGAGATAAG
66 ATGCGTATGTGTGATAAGGCCGAATGGCCAATATGATGAATGTGAACATGCATATATGAGATAAG
22988967 GCCGAATGGCC
131 GCCGAATGGCC
* * * *
22988978 AATGTGATGAATGTGAACATGAATATATATGGTAAGGCCGAATGGCTAATG
1 AATGTGATGAATGTGAACATGAATATGTGTGATAAGGCCGAATGGCCAATG
22989029 CGAAACGTGT
Statistics
Matches: 179, Mismatches: 12, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
141 63 0.35
143 6 0.03
145 92 0.51
147 1 0.01
149 17 0.09
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.26
Consensus pattern (141 bp):
AATGTGATGAATGTGAACATGAATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
ATGCGTATGTGTGATAAGGCCGAATGGCCAATATGATGAATGTGAACATGCATATATGAGATAAG
GCCGAATGGCC
Found at i:22988975 original size:94 final size:94
Alignment explanation
Indices: 22988714--22989028 Score: 477
Period size: 94 Copynumber: 3.3 Consensus size: 94
22988704 ACCCGTATAT
22988714 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCG
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCG
* *
22988779 AGTGGCCAATGTGATGAATGTGAACCTGC
66 AATGGCCAATGTGATGAATGTGAACATGC
*
22988808 ATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAG
1 ----ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAG
22988873 GCCGAATGGCCAATGTGATGAATGTGAACATGC
62 GCCGAATGGCCAATGTGATGAATGTGAACATGC
* * * * *
22988906 GTATGTGTGATAAGGCCGAATGGCCAATATGATGAATGTGAACATGCATATATGAGATAAGGCCG
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCG
*
22988971 AATGGCCAATGTGATGAATGTGAACATGA
66 AATGGCCAATGTGATGAATGTGAACATGC
* * * *
22989000 ATATATATGGTAAGGCCGAATGGCTAATG
1 ATATGTGTGATAAGGCCGAATGGCCAATG
22989029 CGAAACGTGT
Statistics
Matches: 201, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
94 110 0.55
98 91 0.45
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25
Consensus pattern (94 bp):
ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCG
AATGGCCAATGTGATGAATGTGAACATGC
Found at i:22989091 original size:46 final size:46
Alignment explanation
Indices: 22989002--22989101 Score: 110
Period size: 46 Copynumber: 2.1 Consensus size: 46
22988992 GAACATGAAT
* * * *
22989002 ATATATGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATATGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * * *
22989048 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATGTG
1 ATATATGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG-G
22989095 TATATAT
1 -ATATAT
22989102 ATATATTGTG
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
46 37 0.86
47 1 0.02
48 5 0.12
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (46 bp):
ATATATGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:22989384 original size:37 final size:37
Alignment explanation
Indices: 22989239--22989383 Score: 227
Period size: 37 Copynumber: 3.9 Consensus size: 37
22989229 GGAAATATAT
*
22989239 TCCGAGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
22989276 TCCGGGTAAGACCCAATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
22989313 TCCGGGTAAGACCCGATGACTACGCGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
22989350 TCCGGGTAAGACCCGATAACTTCATGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
22989384 TCGTCTGAGC
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:22991238 original size:40 final size:40
Alignment explanation
Indices: 22991194--22991581 Score: 586
Period size: 40 Copynumber: 10.0 Consensus size: 40
22991184 GAGAATTGAG
*
22991194 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
*
22991234 AGTGATGTATCCGTGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
22991274 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
22991314 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
*
22991354 AGTGATGTATCCGGGCTATGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
22991394 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
22991434 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCA-T--T-C-
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
*
22991469 ------GTATCTGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
*
22991503 AGTGATGTATCCGGACTAAGT-TCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCT-CGAAGAGCATTCGTGCT
* * ** *
22991543 AGTGATATATCCGTGCTAAACCCCGAAG-GCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
22991582 TGGACAAAAT
Statistics
Matches: 321, Mismatches: 14, Indels: 27
0.89 0.04 0.07
Matches are distributed among these distances:
29 25 0.08
30 1 0.00
32 1 0.00
33 1 0.00
36 1 0.00
37 1 0.00
39 13 0.04
40 278 0.87
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.28
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
Found at i:22991482 original size:29 final size:29
Alignment explanation
Indices: 22991440--22991499 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
22991430 TGCTAGTGAT
22991440 GTATCCGGGCTAAGTCTCGAAGAGCATTC
1 GTATCCGGGCTAAGTCTCGAAGAGCATTC
*
22991469 GTATCTGGGCTAAGTCTCGAAGAGCATTC
1 GTATCCGGGCTAAGTCTCGAAGAGCATTC
22991498 GT
1 GT
22991500 GCTAGTGATG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (29 bp):
GTATCCGGGCTAAGTCTCGAAGAGCATTC
Found at i:22991511 original size:69 final size:69
Alignment explanation
Indices: 22991400--22991539 Score: 246
Period size: 69 Copynumber: 2.0 Consensus size: 69
22991390 TGCTAGTGAT
*
22991400 GTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAG-TCTCGAAGAG
1 GTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC-CGAAGAG
22991464 CATTC
65 CATTC
*
22991469 GTATCTGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGC
1 GTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGC
22991534 ATTC
66 ATTC
22991538 GT
1 GT
22991540 GCTAGTGATA
Statistics
Matches: 68, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
69 66 0.97
70 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (69 bp):
GTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGC
ATTC
Found at i:22991554 original size:109 final size:108
Alignment explanation
Indices: 22991360--22991578 Score: 341
Period size: 109 Copynumber: 2.0 Consensus size: 108
22991350 TGCTAGTGAT
* *
22991360 GTATCCGGGCTATGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGC
1 GTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCTCGAAGAGC
* ** *
22991425 ATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTC
66 ATTCGTGCTAGTGATATATCCGGGCTAAACCCCGAAG-GCATTC
*
22991469 GTATCTGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGT-TCCGAAGAG
1 GTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCT-CGAAGAG
*
22991533 CATTCGTGCTAGTGATATATCCGTGCTAAACCCCGAAGGCATTC
65 CATTCGTGCTAGTGATATATCCGGGCTAAACCCCGAAGGCATTC
22991577 GT
1 GT
22991579 GCTTGGACAA
Statistics
Matches: 101, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
108 9 0.09
109 92 0.91
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (108 bp):
GTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCTCGAAGAGC
ATTCGTGCTAGTGATATATCCGGGCTAAACCCCGAAGGCATTC
Found at i:22991610 original size:149 final size:149
Alignment explanation
Indices: 22991320--22991595 Score: 405
Period size: 149 Copynumber: 1.9 Consensus size: 149
22991310 TGCTAGTGAT
* *
22991320 GTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTATGTCTCGAAGAGC
1 GTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCTCGAAGAGC
* ** * ***
22991385 ATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGGC
66 ATTCGTGCTAGTGATATATCCGGGCTAAACCCCGAAGAGCATTCGTGCTAGTGAAAAATCCGGGC
22991450 TAAGTCTCGAAGAGCATTC
131 TAAGTCTCGAAGAGCATTC
*
22991469 GTATCTGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGT-TCCGAAGAG
1 GTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCT-CGAAGAG
* *
22991533 CATTCGTGCTAGTGATATATCCGTGCTAAACCCCGAAG-GCATTCGTGCTTG-GACAAAATCCGG
65 CATTCGTGCTAGTGATATATCCGGGCTAAACCCCGAAGAGCATTCGTGCTAGTGA-AAAATCCGG
22991596 ATTTGAGGTT
Statistics
Matches: 113, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
147 2 0.02
148 19 0.17
149 92 0.81
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (149 bp):
GTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCTCGAAGAGC
ATTCGTGCTAGTGATATATCCGGGCTAAACCCCGAAGAGCATTCGTGCTAGTGAAAAATCCGGGC
TAAGTCTCGAAGAGCATTC
Found at i:22995665 original size:47 final size:47
Alignment explanation
Indices: 22995586--22996325 Score: 1174
Period size: 47 Copynumber: 15.6 Consensus size: 47
22995576 TATTTGAATA
22995586 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
22995635 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
22995682 AATGTGAAAGTGTATATATGTGAAAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22995729 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22995778 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22995825 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22995872 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
22995921 AATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22995970 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22996017 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22996064 AATGTGAAAGTGTATATATGTGATAAAGCCTAATGGCCGATGTCATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22996111 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
22996158 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
22996205 GATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
22996252 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22996299 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
22996326 TCCCGAAGGG
Statistics
Matches: 651, Mismatches: 34, Indels: 14
0.93 0.05 0.02
Matches are distributed among these distances:
47 506 0.78
49 142 0.22
51 3 0.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:22995747 original size:143 final size:143
Alignment explanation
Indices: 22995586--22996325 Score: 1249
Period size: 143 Copynumber: 5.2 Consensus size: 143
22995576 TATTTGAATA
22995586 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
22995651 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAAAAGGCCGAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
22995716 GGCCAATGTGATG
131 GGCCAATGTGATG
22995729 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
22995794 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
22995859 GGCCAATGTGATG
131 GGCCAATGTGATG
22995872 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTGTA
*
22995937 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
64 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
* *
22996002 ATAGCCGATGTGATG
129 ATGGCCAATGTGATG
22996017 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
22996080 TATGTGATAAAGCCTAATGGCCGATGTCATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
22996145 GGCCAATGTGATG
131 GGCCAATGTGATG
* * * * * *
22996158 AATGTGAAAGTG--TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * * *
22996221 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
*
22996286 GGCCAACGTGATG
131 GGCCAATGTGATG
*
22996299 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
22996326 TCCCGAAGGG
Statistics
Matches: 567, Mismatches: 26, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
141 228 0.40
142 1 0.00
143 245 0.43
145 93 0.16
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (143 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
GGCCAATGTGATG
Found at i:22998713 original size:40 final size:40
Alignment explanation
Indices: 22998668--22998859 Score: 217
Period size: 40 Copynumber: 4.8 Consensus size: 40
22998658 ATAACCACAA
* * *
22998668 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
22998708 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
22998748 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * *
22998788 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * *
22998828 GCATAAATGCCTTCGAGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
22998860 CATTCAAATG
Statistics
Matches: 141, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 1 0.01
40 136 0.96
41 4 0.03
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:22998775 original size:80 final size:80
Alignment explanation
Indices: 22998639--22998858 Score: 239
Period size: 80 Copynumber: 2.8 Consensus size: 80
22998629 ACCCAAGTTT
* * * * * * * * *
22998639 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAG
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
*
22998702 CAACTCGCACAAATGC
66 C-ACTAGCACAAATGC
* * *
22998718 CTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
1 CTTCGGGACTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
* *
22998782 TCACTAGCATAAATGC
65 GCACTAGCACAAATGC
* * *
22998798 CTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGAGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATA
22998859 TCATTCAAAT
Statistics
Matches: 116, Mismatches: 21, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
79 12 0.10
80 97 0.84
81 7 0.06
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
CACTAGCACAAATGC
Found at i:23003635 original size:29 final size:29
Alignment explanation
Indices: 23003593--23003693 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
23003583 CATGAAATTG
23003593 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
*
23003622 GCACTAAGTGTGCGGGTTCAAGTTGTATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
* * *
23003651 GCACTAAGTGTGCGAGTTC-GATTATATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
*
23003679 ACACTAAGTGTGCGG
1 GCACTAAGTGTGCGG
23003694 ACTTACTATA
Statistics
Matches: 65, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
28 19 0.29
29 46 0.71
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGGGTTCAAATTGTATA
Found at i:23009566 original size:47 final size:47
Alignment explanation
Indices: 23009497--23009676 Score: 297
Period size: 47 Copynumber: 3.8 Consensus size: 47
23009487 TGTACACACA
*
23009497 TGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAG
1 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAG
* * *
23009544 TGGCCAACGTGATGGATGTGAAAGTGTATATATGTGATAAGGCCGAA
1 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAG
*
23009591 TGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAG
1 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAG
* *
23009638 TGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATA
1 TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATA
23009677 AGTCCCGAAG
Statistics
Matches: 122, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 122 1.00
ACGTcount: A:0.31, C:0.09, G:0.33, T:0.27
Consensus pattern (47 bp):
TGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAG
Done.