Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53248092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1300000 characters in sequence are not A, C, G, or T
File 82 of 175
Found at i:25668026 original size:16 final size:16
Alignment explanation
Indices: 25668005--25668042 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
25667995 ATATTCTTAA
25668005 GATATGACCAAAAGAT
1 GATATGACCAAAAGAT
25668021 GATATGACCAAAAGAT
1 GATATGACCAAAAGAT
25668037 GATATG
1 GATATG
25668043 TAAATATTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.11, G:0.21, T:0.21
Consensus pattern (16 bp):
GATATGACCAAAAGAT
Found at i:25677929 original size:20 final size:20
Alignment explanation
Indices: 25677887--25677929 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
25677877 TGGTAATTTT
**
25677887 TCTGTCACTTCAATTTTTGC
1 TCTGTCACTTCAATTCCTGC
25677907 TCTGTCCACTTCAATTCCT-C
1 TCTGT-CACTTCAATTCCTGC
25677927 TCT
1 TCT
25677930 ATGATATCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.14, C:0.33, G:0.07, T:0.47
Consensus pattern (20 bp):
TCTGTCACTTCAATTCCTGC
Found at i:25681200 original size:23 final size:23
Alignment explanation
Indices: 25681167--25681213 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
25681157 ATTGGCACAA
*
25681167 CATGCTCTTAGATTTGTCTATCT
1 CATGCTCTTAGATTAGTCTATCT
*
25681190 CATGCTTTTAGATTAGTCTATCT
1 CATGCTCTTAGATTAGTCTATCT
25681213 C
1 C
25681214 GGCCATCTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.19, C:0.21, G:0.13, T:0.47
Consensus pattern (23 bp):
CATGCTCTTAGATTAGTCTATCT
Found at i:25684120 original size:17 final size:18
Alignment explanation
Indices: 25684075--25684121 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
25684065 AACTCTTTTT
*
25684075 TAAAATATTAAAGACTAAA
1 TAAAA-ATTAAAGAATAAA
* *
25684094 TATAACTTAAA-AATAAA
1 TAAAAATTAAAGAATAAA
25684111 TAAAAATTAAA
1 TAAAAATTAAA
25684122 TTGATAAAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
17 14 0.61
18 5 0.22
19 4 0.17
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.28
Consensus pattern (18 bp):
TAAAAATTAAAGAATAAA
Found at i:25684143 original size:14 final size:13
Alignment explanation
Indices: 25684102--25684153 Score: 54
Period size: 14 Copynumber: 3.9 Consensus size: 13
25684092 AATATAACTT
25684102 AAAAATAAA--TA
1 AAAAATAAATTTA
*
25684113 AAAATTAAATTGATA
1 AAAAATAAATT--TA
25684128 AAAAATAACATTTA
1 AAAAATAA-ATTTA
25684142 AAAAATAAATTT
1 AAAAATAAATTT
25684154 TACACCATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
11 8 0.24
13 4 0.12
14 10 0.29
15 9 0.26
16 3 0.09
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (13 bp):
AAAAATAAATTTA
Found at i:25684746 original size:23 final size:23
Alignment explanation
Indices: 25684688--25684752 Score: 80
Period size: 23 Copynumber: 2.8 Consensus size: 23
25684678 TATTTTTTTA
*
25684688 TTTTTAAAATACTTTT-AAAATAT
1 TTTTTAAAAT-TTTTTAAAAATAT
25684711 TTTTTAAAATTTTTTAAAAATACT
1 TTTTTAAAATTTTTTAAAAATA-T
*
25684735 TTTTT-AATTTTTTTAAAA
1 TTTTTAAAATTTTTTAAAA
25684753 TTTAAAATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.11
23 28 0.74
24 6 0.16
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (23 bp):
TTTTTAAAATTTTTTAAAAATAT
Found at i:25684754 original size:11 final size:11
Alignment explanation
Indices: 25684688--25684755 Score: 68
Period size: 11 Copynumber: 6.1 Consensus size: 11
25684678 TATTTTTTTA
*
25684688 TTTTTAAAATA
1 TTTTTAAAATT
*
25684699 CTTTTAAAATAT
1 TTTTTAAAAT-T
25684711 TTTTTAAAATT
1 TTTTTAAAATT
*
25684722 TTTTAAAAATACT
1 TTTTTAAAAT--T
25684735 TTTTT--AATT
1 TTTTTAAAATT
25684744 TTTTTAAAATT
1 TTTTTAAAATT
25684755 T
1 T
25684756 AAAATATTTT
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
9 6 0.13
11 27 0.57
12 9 0.19
13 5 0.11
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (11 bp):
TTTTTAAAATT
Found at i:25687040 original size:3 final size:3
Alignment explanation
Indices: 25687032--25687056 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
25687022 AAATACTTAG
25687032 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
25687057 AGTAGATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:25693352 original size:22 final size:22
Alignment explanation
Indices: 25693327--25693371 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
25693317 TTTAATAAAA
25693327 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
25693349 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
25693371 A
1 A
25693372 CACTCCCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:25697134 original size:22 final size:23
Alignment explanation
Indices: 25697100--25697145 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
25697090 TTTAATAAAA
25697100 AAAACTATCTACAAAATATTCCT
1 AAAACTATCTACAAAATATTCCT
* *
25697123 AAAA-TATTTACAGAATATTCCT
1 AAAACTATCTACAAAATATTCCT
25697145 A
1 A
25697146 CACATTAGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.48, C:0.17, G:0.02, T:0.33
Consensus pattern (23 bp):
AAAACTATCTACAAAATATTCCT
Found at i:25698740 original size:13 final size:13
Alignment explanation
Indices: 25698722--25698746 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25698712 ATTCCATATC
25698722 CATCGTTGAGTTT
1 CATCGTTGAGTTT
25698735 CATCGTTGAGTT
1 CATCGTTGAGTT
25698747 CCTTTGGCCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.16, G:0.24, T:0.44
Consensus pattern (13 bp):
CATCGTTGAGTTT
Found at i:25699842 original size:21 final size:21
Alignment explanation
Indices: 25699816--25699857 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
25699806 CATACTCTGA
25699816 GACTATCTTAGTTGGTCCATT
1 GACTATCTTAGTTGGTCCATT
25699837 GACTATCTTAGTTGGTCCATT
1 GACTATCTTAGTTGGTCCATT
25699858 ACACTGGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.43
Consensus pattern (21 bp):
GACTATCTTAGTTGGTCCATT
Found at i:25701235 original size:6 final size:6
Alignment explanation
Indices: 25701224--25701271 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
25701214 AGGTTTCTCA
* * * *
25701224 AAATGG AAATGG AAATGC TAATGC AAATGG AAATGG AGATGAG AAATG
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAATG-G AAATG
25701272 ATACATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
6 30 0.86
7 5 0.14
ACGTcount: A:0.48, C:0.04, G:0.29, T:0.19
Consensus pattern (6 bp):
AAATGG
Found at i:25701331 original size:50 final size:50
Alignment explanation
Indices: 25701271--25701371 Score: 175
Period size: 50 Copynumber: 2.0 Consensus size: 50
25701261 GATGAGAAAT
* **
25701271 GATACATTTGCAAATGTACATGGATTACTCAGAAATGATTGAAAGAATGA
1 GATACATTTGCAAATGTACATGGATTACTCAGAAATAATCAAAAGAATGA
25701321 GATACATTTGCAAATGTACATGGATTACTCAGAAATAATCAAAAGAATGA
1 GATACATTTGCAAATGTACATGGATTACTCAGAAATAATCAAAAGAATGA
25701371 G
1 G
25701372 TTTATGTTTT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.44, C:0.11, G:0.19, T:0.27
Consensus pattern (50 bp):
GATACATTTGCAAATGTACATGGATTACTCAGAAATAATCAAAAGAATGA
Found at i:25708704 original size:14 final size:13
Alignment explanation
Indices: 25708654--25708730 Score: 55
Period size: 13 Copynumber: 5.4 Consensus size: 13
25708644 GAAATTTACA
*
25708654 GAGAGAGGAATTA
1 GAGAGAGGAATTG
*
25708667 GAGATGAGGATTTTGG
1 GAGA-GAGGA-ATT-G
25708683 GAGAGAGGAATTG
1 GAGAGAGGAATTG
*
25708696 GAGACGAGGATTCTAAG
1 GAGA-GAGGAAT-T--G
*
25708713 GAGAGAAGAATTG
1 GAGAGAGGAATTG
25708726 GAGAG
1 GAGAG
25708731 CAATTTTTCT
Statistics
Matches: 51, Mismatches: 6, Indels: 14
0.72 0.08 0.20
Matches are distributed among these distances:
13 15 0.29
14 13 0.25
15 9 0.18
16 9 0.18
17 5 0.10
ACGTcount: A:0.38, C:0.03, G:0.42, T:0.18
Consensus pattern (13 bp):
GAGAGAGGAATTG
Found at i:25710877 original size:17 final size:18
Alignment explanation
Indices: 25710855--25710889 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
25710845 TAAGAGTTGA
*
25710855 CAAA-TTTATTTTTCTAG
1 CAAATTTTATTATTCTAG
25710872 CAAATTTTATTATTCTAG
1 CAAATTTTATTATTCTAG
25710890 AATGTGAGGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.31, C:0.11, G:0.06, T:0.51
Consensus pattern (18 bp):
CAAATTTTATTATTCTAG
Found at i:25712723 original size:40 final size:40
Alignment explanation
Indices: 25712663--25712815 Score: 225
Period size: 40 Copynumber: 3.8 Consensus size: 40
25712653 GTTAATTATA
25712663 CCTGATTGCACATACGTGCCCCTGTTTGTACTTTGGTACC
1 CCTGATTGCACATACGTGCCCCTGTTTGTACTTTGGTACC
* * *
25712703 CTTGATTGCACATACATGCCCCTATTTGTACTTTGGTACC
1 CCTGATTGCACATACGTGCCCCTGTTTGTACTTTGGTACC
* * **
25712743 CCTGATTGCACATACGTGCCCTTGATTGTACTTCAGTACC
1 CCTGATTGCACATACGTGCCCCTGTTTGTACTTTGGTACC
* *
25712783 CCTGATTGAACATACGTGCCCCTGTTTATACTT
1 CCTGATTGCACATACGTGCCCCTGTTTGTACTT
25712816 CGATAATTTC
Statistics
Matches: 99, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 99 1.00
ACGTcount: A:0.19, C:0.29, G:0.17, T:0.35
Consensus pattern (40 bp):
CCTGATTGCACATACGTGCCCCTGTTTGTACTTTGGTACC
Found at i:25712770 original size:20 final size:20
Alignment explanation
Indices: 25712663--25712806 Score: 94
Period size: 20 Copynumber: 7.2 Consensus size: 20
25712653 GTTAATTATA
25712663 CCTGATTGCACATACGTGCC
1 CCTGATTGCACATACGTGCC
* * * ** *
25712683 CCTGTTTGTACTTTGGTACC
1 CCTGATTGCACATACGTGCC
* *
25712703 CTTGATTGCACATACATGCC
1 CCTGATTGCACATACGTGCC
* * ** *
25712723 CCT-ATTTGTACTTTGGTACC
1 CCTGA-TTGCACATACGTGCC
25712743 CCTGATTGCACATACGTGCC
1 CCTGATTGCACATACGTGCC
* * * *
25712763 CTTGATTGTAC-TTCAGTACC
1 CCTGATTGCACATAC-GTGCC
*
25712783 CCTGATTGAACATACGTGCC
1 CCTGATTGCACATACGTGCC
25712803 CCTG
1 CCTG
25712807 TTTATACTTC
Statistics
Matches: 86, Mismatches: 34, Indels: 8
0.67 0.27 0.06
Matches are distributed among these distances:
19 3 0.03
20 80 0.93
21 3 0.03
ACGTcount: A:0.19, C:0.30, G:0.18, T:0.33
Consensus pattern (20 bp):
CCTGATTGCACATACGTGCC
Found at i:25717534 original size:27 final size:27
Alignment explanation
Indices: 25717495--25717573 Score: 140
Period size: 27 Copynumber: 2.9 Consensus size: 27
25717485 ATTGAATATA
25717495 AAGGGGATTGCTAAGTGCTGATTCCCCC
1 AAGGGG-TTGCTAAGTGCTGATTCCCCC
*
25717523 AAGGGGTTGCTAAGTGATGATTCCCCC
1 AAGGGGTTGCTAAGTGCTGATTCCCCC
25717550 AAGGGGTTGCTAAGTGCTGATTCC
1 AAGGGGTTGCTAAGTGCTGATTCC
25717574 TCAACTCATT
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
27 43 0.88
28 6 0.12
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (27 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCC
Found at i:25719665 original size:50 final size:50
Alignment explanation
Indices: 25719601--25719700 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
25719591 ACGCAAGGAG
25719601 TTTCTTGAGCTGAAGCAGGGCCGAATGTCTGTGGCAGAATATGAAAGGGA
1 TTTCTTGAGCTGAAGCAGGGCCGAATGTCTGTGGCAGAATATGAAAGGGA
*
25719651 TTTCTTGAGTTGAAGCAGGGCCGAATGTCTGTGGCAGAATATGAAAGGGA
1 TTTCTTGAGCTGAAGCAGGGCCGAATGTCTGTGGCAGAATATGAAAGGGA
25719701 GTTTGTTAGG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.28, C:0.13, G:0.34, T:0.25
Consensus pattern (50 bp):
TTTCTTGAGCTGAAGCAGGGCCGAATGTCTGTGGCAGAATATGAAAGGGA
Found at i:25726726 original size:137 final size:137
Alignment explanation
Indices: 25726471--25726736 Score: 374
Period size: 137 Copynumber: 1.9 Consensus size: 137
25726461 AACGGGCTTG
*
25726471 CTCACACAACTTGTCAGTCGAAACATAGCTACACAATGCTACTCACACAAGCTCTCGAGTATCCG
1 CTCACACAACTTGTCAGTCGAAACATAGCTACACAATGCCACTCACACAAGCTCTCGAGTATCCG
* * *
25726536 CAACAAATGTCGAAACTCAGCCACTAGTAGGACATCCAGGACCAACACTCGAAACATGGTAACCT
66 CAACAAATGTCGAAACGCAGCCACCAGTAGGACATCCAGGACCAACACCCGAAACATGGTAACCT
25726601 GGGTCTA
131 GGGTCTA
* * * *
25726608 CTCACACAAGC-TGTCGGTCGAAACGTAGCTACACAATGCCACTCACACAAGCTGTCGAGTATTC
1 CTCACACAA-CTTGTCAGTCGAAACATAGCTACACAATGCCACTCACACAAGCTCTCGAGTATCC
* * * * * *
25726672 GTAACAAATGTC-AGAACGCAGCCACCAGTGGGACGTTCAGGATCAGCACCCGAAACATGGTAAC
65 GCAACAAATGTCGA-AACGCAGCCACCAGTAGGACATCCAGGACCAACACCCGAAACATGGTAAC
25726736 C
129 C
25726737 CTAATGACAT
Statistics
Matches: 113, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
136 1 0.01
137 111 0.98
138 1 0.01
ACGTcount: A:0.33, C:0.30, G:0.19, T:0.18
Consensus pattern (137 bp):
CTCACACAACTTGTCAGTCGAAACATAGCTACACAATGCCACTCACACAAGCTCTCGAGTATCCG
CAACAAATGTCGAAACGCAGCCACCAGTAGGACATCCAGGACCAACACCCGAAACATGGTAACCT
GGGTCTA
Found at i:25736662 original size:10 final size:10
Alignment explanation
Indices: 25736647--25736673 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
25736637 TTATAAATGT
25736647 TTTAATATGC
1 TTTAATATGC
25736657 TTTAATATGC
1 TTTAATATGC
25736667 TTTAATA
1 TTTAATA
25736674 ATATTCAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.52
Consensus pattern (10 bp):
TTTAATATGC
Found at i:25743870 original size:15 final size:15
Alignment explanation
Indices: 25743789--25743863 Score: 52
Period size: 15 Copynumber: 5.2 Consensus size: 15
25743779 TTTTGAATAA
25743789 AAAT-TATTTTATTT
1 AAATATATTTTATTT
25743803 AAATATA-TTTA-TT
1 AAATATATTTTATTT
* * * *
25743816 AATTCTATTTAAATT
1 AAATATATTTTATTT
*
25743831 -AATAT-TTAAATATTT
1 AAATATATT--TTATTT
25743846 AAATATATTTTATTT
1 AAATATATTTTATTT
25743861 AAA
1 AAA
25743864 CTTATTTATT
Statistics
Matches: 45, Mismatches: 9, Indels: 13
0.67 0.13 0.19
Matches are distributed among these distances:
13 9 0.20
14 14 0.31
15 15 0.33
16 5 0.11
17 2 0.04
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.55
Consensus pattern (15 bp):
AAATATATTTTATTT
Found at i:25743883 original size:58 final size:57
Alignment explanation
Indices: 25743789--25743901 Score: 192
Period size: 58 Copynumber: 2.0 Consensus size: 57
25743779 TTTTGAATAA
*
25743789 AAATTATTTTATTTAAATATATTTATTAATTCTATTTAAATTAATATTTAAATATTT
1 AAATTATTTTATTTAAATATATTTATTAATTCTATTTAAACTAATATTTAAATATTT
25743846 AAATATATTTTATTTAAACT-TATTTATTAATTCTATTTAAACTAATATTTAAATAT
1 AAAT-TATTTTATTTAAA-TATATTTATTAATTCTATTTAAACTAATATTTAAATAT
25743902 GTCAAATGGT
Statistics
Matches: 53, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
57 4 0.08
58 48 0.91
59 1 0.02
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (57 bp):
AAATTATTTTATTTAAATATATTTATTAATTCTATTTAAACTAATATTTAAATATTT
Found at i:25743921 original size:58 final size:58
Alignment explanation
Indices: 25743808--25743921 Score: 158
Period size: 58 Copynumber: 2.0 Consensus size: 58
25743798 TATTTAAATA
* * * *
25743808 TATTTATTAATTCTATTTAAATTAATATTTAAATATTTAAATATATTTTATTTAAACT
1 TATTTATTAATTCTATTTAAACTAATATTTAAATATGTAAATATAGTTTAATTAAACT
* *
25743866 TATTTATTAATTCTATTTAAACTAATATTTAAATATGTCAA-ATGGTTTAGATTAAA
1 TATTTATTAATTCTATTTAAACTAATATTTAAATATGTAAATATAGTTTA-ATTAAA
25743922 TTTTTTTAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
57 6 0.12
58 43 0.88
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.51
Consensus pattern (58 bp):
TATTTATTAATTCTATTTAAACTAATATTTAAATATGTAAATATAGTTTAATTAAACT
Found at i:25744248 original size:15 final size:14
Alignment explanation
Indices: 25744228--25744293 Score: 60
Period size: 15 Copynumber: 4.4 Consensus size: 14
25744218 CCATAACGTC
25744228 TAACCCTTAAATCTT
1 TAACCCTTAAA-CTT
*
25744243 TAACCCCTAAACTT
1 TAACCCTTAAACTT
25744257 TAAACCCTTAAACCTCT
1 T-AACCCTTAAA-CT-T
* * *
25744274 AAACCCCTAAACTG
1 TAACCCTTAAACTT
25744288 TAACCC
1 TAACCC
25744294 GAATCCCTAA
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
14 9 0.21
15 21 0.50
16 11 0.26
17 1 0.02
ACGTcount: A:0.36, C:0.35, G:0.02, T:0.27
Consensus pattern (14 bp):
TAACCCTTAAACTT
Found at i:25744293 original size:30 final size:29
Alignment explanation
Indices: 25744228--25744293 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 29
25744218 CCATAACGTC
* * *
25744228 TAACCCTTAAATCTTTAACCCCTAAACTT
1 TAACCCTTAAACCTTAAACCCCTAAACTG
25744257 TAAACCCTTAAACCTCTAAACCCCTAAACTG
1 T-AACCCTTAAACCT-TAAACCCCTAAACTG
25744288 TAACCC
1 TAACCC
25744294 GAATCCCTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 1 0.03
30 17 0.53
31 14 0.44
ACGTcount: A:0.36, C:0.35, G:0.02, T:0.27
Consensus pattern (29 bp):
TAACCCTTAAACCTTAAACCCCTAAACTG
Found at i:25744541 original size:21 final size:21
Alignment explanation
Indices: 25744501--25744541 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
25744491 AACCTTAAAT
* * *
25744501 CCCTAACTCTTAATCTCTAAC
1 CCCTAACCCTTAACCCCTAAC
25744522 CCCTAACCCTTAACCCCTAA
1 CCCTAACCCTTAACCCCTAA
25744542 ATCACAACCC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.29, C:0.44, G:0.00, T:0.27
Consensus pattern (21 bp):
CCCTAACCCTTAACCCCTAAC
Found at i:25744580 original size:14 final size:15
Alignment explanation
Indices: 25744561--25744593 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
25744551 CTTAAACCAA
25744561 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
25744575 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
25744590 AATC
1 AATC
25744594 TATAAACCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.30
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:25745057 original size:41 final size:40
Alignment explanation
Indices: 25744996--25745345 Score: 327
Period size: 41 Copynumber: 8.7 Consensus size: 40
25744986 ATATTTTGCA
*
25744996 GCGCTTTTTCAAAAACGCCGCTAAAGTCCCGAGCATTAGCG
1 GCGCCTTTTCAAAAACGCCGCTAAAG-CCCGAGCATTAGCG
* * *
25745037 ACGCCTTTTCAAAAACGCCGCTAAAGCCTTGAGCATTAGTG
1 GCGCCTTTTCAAAAACGCCGCTAAAGCC-CGAGCATTAGCG
* * *
25745078 GTGCATTTTCAAAAACACCGCTAAAGCCCTGAGCATTAGCG
1 GCGCCTTTTCAAAAACGCCGCTAAAGCCC-GAGCATTAGCG
* * * * *
25745119 GAGCTTTTTTAAAAACGTCGCTAAAGCCCTGAGCATTAGTG
1 GCGCCTTTTCAAAAACGCCGCTAAAGCCC-GAGCATTAGCG
25745160 GCGCCTTTTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCG
1 GCGCCTTTTCAAAAACGCCGCTAAAGCCC-GAGCATTAGCG
* ** ** *
25745201 GCGCCTTTCCAAAAACGCCGCT-AA-TTC-AAAAAT-GC-
1 GCGCCTTTTCAAAAACGCCGCTAAAGCCCGAGCATTAGCG
* *
25745236 -CG-CTAATTCAAAAACACCGCTAAAGCCCCGAGCATTAGCG
1 GCGCCT-TTTCAAAAACGCCGCTAAAG-CCCGAGCATTAGCG
* * *
25745276 GTGCTTTTTCGAAAACGCCGCTAAAGACCCGAGCATTAGCG
1 GCGCCTTTTCAAAAACGCCGCTAAAG-CCCGAGCATTAGCG
* * ***
25745317 ACGCTTTTTCAAAATTTCCGCTAAAGCCC
1 GCGCCTTTTCAAAAACGCCGCTAAAGCCC
25745346 CGAAAGGTCA
Statistics
Matches: 251, Mismatches: 47, Indels: 23
0.78 0.15 0.07
Matches are distributed among these distances:
33 2 0.01
34 15 0.06
35 2 0.01
36 2 0.01
37 4 0.02
38 3 0.01
39 3 0.01
40 7 0.03
41 212 0.84
42 1 0.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (40 bp):
GCGCCTTTTCAAAAACGCCGCTAAAGCCCGAGCATTAGCG
Found at i:25745249 original size:18 final size:17
Alignment explanation
Indices: 25745210--25745258 Score: 80
Period size: 17 Copynumber: 2.9 Consensus size: 17
25745200 GGCGCCTTTC
25745210 CAAAAACGCCGCTAATT
1 CAAAAACGCCGCTAATT
*
25745227 CAAAAATGCCGCTAATT
1 CAAAAACGCCGCTAATT
*
25745244 CAAAAACACCGCTAA
1 CAAAAACGCCGCTAA
25745259 AGCCCCGAGC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.45, C:0.29, G:0.10, T:0.16
Consensus pattern (17 bp):
CAAAAACGCCGCTAATT
Found at i:25745300 original size:157 final size:159
Alignment explanation
Indices: 25744996--25745345 Score: 422
Period size: 157 Copynumber: 2.2 Consensus size: 159
25744986 ATATTTTGCA
*
25744996 GCGCTTTTTCAAAAACGCCGCTAAAGTCCCGAGCATTAGCGACGCCTTTTCAAAAACGCCGCTAA
1 GCGCTTTTTCAAAAACGCCGCTAAAG-CCCGAGCATTAGCGACGCCTTTCCAAAAACGCCGCTAA
** * ** * *
25745061 AGCCTTGAGCATTAGTGGTGCATTTTCAAAAACACCGCTAAAGCCCTGAGCATTAGCGGAGCTTT
65 A--CTT--GCAAAAATGCCGCATATTCAAAAACACCGCTAAAGCCCCGAGCATTAGCGGAGCTTT
* * *
25745126 TTTAAAAACGTCGCTAAAG-CCCTGAGCATTAGTG
126 TTCAAAAACGCCGCTAAAGACCC-GAGCATTAGCG
* *
25745160 GCGCCTTTTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCCTTTCCAAAAACGCCGCT-A
1 GCGCTTTTTCAAAAACGCCGCTAAAGCCC-GAGCATTAGCGACGCCTTTCCAAAAACGCCGCTAA
*
25745224 A-TT-CAAAAATGCCGC-TAATTCAAAAACACCGCTAAAGCCCCGAGCATTAGCGGTGCTTTTTC
65 ACTTGCAAAAATGCCGCAT-ATTCAAAAACACCGCTAAAGCCCCGAGCATTAGCGGAGCTTTTTC
*
25745286 GAAAACGCCGCTAAAGACCCGAGCATTAGCG
129 AAAAACGCCGCTAAAGACCCGAGCATTAGCG
* ***
25745317 ACGCTTTTTCAAAATTTCCGCTAAAGCCC
1 GCGCTTTTTCAAAAACGCCGCTAAAGCCC
25745346 CGAAAGGTCA
Statistics
Matches: 163, Mismatches: 20, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
156 1 0.01
157 96 0.59
158 3 0.02
160 2 0.01
163 5 0.03
164 56 0.34
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (159 bp):
GCGCTTTTTCAAAAACGCCGCTAAAGCCCGAGCATTAGCGACGCCTTTCCAAAAACGCCGCTAAA
CTTGCAAAAATGCCGCATATTCAAAAACACCGCTAAAGCCCCGAGCATTAGCGGAGCTTTTTCAA
AAACGCCGCTAAAGACCCGAGCATTAGCG
Found at i:25747928 original size:23 final size:23
Alignment explanation
Indices: 25747898--25747943 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
25747888 ATGAATATAT
*
25747898 AGTTGCTAATGTTGATGGTATTA
1 AGTTGCTAATGTTGATGGAATTA
*
25747921 AGTTGCTAATTTTGATGGAATTA
1 AGTTGCTAATGTTGATGGAATTA
25747944 CCTCTTAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.28, C:0.04, G:0.24, T:0.43
Consensus pattern (23 bp):
AGTTGCTAATGTTGATGGAATTA
Found at i:25750385 original size:23 final size:23
Alignment explanation
Indices: 25750351--25750588 Score: 189
Period size: 23 Copynumber: 10.3 Consensus size: 23
25750341 TATGTTAAAT
25750351 GGTAT-ATTGGTTGTGTTTGGAG
1 GGTATAATTGGTTGTGTTTGGAG
* **
25750373 GGTATACTTGGTTGTGTTCAGAG
1 GGTATAATTGGTTGTGTTTGGAG
* * * *
25750396 GTTATATATATGATGGTGTTTTGCA-
1 GGTATA-AT-TGGTTGTG-TTTGGAG
* * * *
25750421 GGTACATTTGGTTATGTTCGGAG
1 GGTATAATTGGTTGTGTTTGGAG
*
25750444 GGTA-AATTGGTTGTGTTTGAAG
1 GGTATAATTGGTTGTGTTTGGAG
* * *
25750466 GGTATACTTGGTTCTGTTCGGAG
1 GGTATAATTGGTTGTGTTTGGAG
*
25750489 GTTATATATATGGTTGTGTTTGGAG
1 GGTATA-AT-TGGTTGTGTTTGGAG
* * * *
25750514 GGTACATTTGGTTGTGTTCGGAT
1 GGTATAATTGGTTGTGTTTGGAG
*
25750537 GGTA-AATTGGTTGTGTTTCGAG
1 GGTATAATTGGTTGTGTTTGGAG
*
25750559 GGTA-AATTGGTTGTGTTTGGTG
1 GGTATAATTGGTTGTGTTTGGAG
25750581 GGTGATAA
1 GGT-ATAA
25750589 CTTTATGCTA
Statistics
Matches: 165, Mismatches: 41, Indels: 18
0.74 0.18 0.08
Matches are distributed among these distances:
22 64 0.39
23 65 0.39
24 6 0.04
25 27 0.16
26 3 0.02
ACGTcount: A:0.18, C:0.05, G:0.35, T:0.42
Consensus pattern (23 bp):
GGTATAATTGGTTGTGTTTGGAG
Found at i:25750432 original size:48 final size:48
Alignment explanation
Indices: 25750353--25750575 Score: 216
Period size: 48 Copynumber: 4.8 Consensus size: 48
25750343 TGTTAAATGG
* * * *
25750353 TATAT-TGGTTGTGTTTGGAGGGTATACTTGGTTGTGTTCAGAGGTTA
1 TATATATGGTTGTGTTTGAAGGGTACATTTGGTTGTGTTCGGAGGTTA
* * * * *
25750400 TATATATGATGGTGTTTTGCA-GGTACATTTGGTTATGTTCGGAGGGTA
1 TATATATGGTTGTG-TTTGAAGGGTACATTTGGTTGTGTTCGGAGGTTA
* * *
25750448 -A-AT-TGGTTGTGTTTGAAGGGTATACTTGGTTCTGTTCGGAGGTTA
1 TATATATGGTTGTGTTTGAAGGGTACATTTGGTTGTGTTCGGAGGTTA
*
25750493 TATATATGGTTGTGTTTGGAGGGTACATTTGGTTGTGTTCGGATGG-TA
1 TATATATGGTTGTGTTTGAAGGGTACATTTGGTTGTGTTCGGA-GGTTA
*
25750541 -A-AT-TGGTTGTGTTTCG-AGGGTA-AATTGGTTGTGTT
1 TATATATGGTTGTGTTT-GAAGGGTACATTTGGTTGTGTT
25750576 TGGTGGGTGA
Statistics
Matches: 148, Mismatches: 20, Indels: 19
0.79 0.11 0.10
Matches are distributed among these distances:
44 17 0.11
45 46 0.31
46 6 0.04
47 9 0.06
48 63 0.43
49 7 0.05
ACGTcount: A:0.18, C:0.05, G:0.34, T:0.43
Consensus pattern (48 bp):
TATATATGGTTGTGTTTGAAGGGTACATTTGGTTGTGTTCGGAGGTTA
Found at i:25750468 original size:93 final size:92
Alignment explanation
Indices: 25750351--25750575 Score: 319
Period size: 93 Copynumber: 2.4 Consensus size: 92
25750341 TATGTTAAAT
*
25750351 GGTATATTGGTTGTGTTTGGAGGGTATACTTGGTTGTGTTCAGAGGTTATATATATGATGGTGTT
1 GGTAAATTGGTTGTGTTT-GAGGGTATACTTGGTTGTGTTCAGAGGTTATATATATGATGGTG-T
25750416 TTGCA-GGTACATTTGGTTATGTTCGGAG
64 TTGCAGGGTACATTTGGTTATGTTCGGAG
* * * *
25750444 GGTAAATTGGTTGTGTTTGAAGGGTATACTTGGTTCTGTTCGGAGGTTATATATATGGTTGTGTT
1 GGTAAATTGGTTGTGTTTG-AGGGTATACTTGGTTGTGTTCAGAGGTTATATATATGATGGTGTT
* * *
25750509 TGGAGGGTACATTTGGTTGTGTTCGGAT
65 TGCAGGGTACATTTGGTTATGTTCGGAG
*
25750537 GGTAAATTGGTTGTGTTTCGAGGGTA-AATTGGTTGTGTT
1 GGTAAATTGGTTGTGTTT-GAGGGTATACTTGGTTGTGTT
25750576 TGGTGGGTGA
Statistics
Matches: 119, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
92 17 0.14
93 101 0.85
94 1 0.01
ACGTcount: A:0.18, C:0.05, G:0.34, T:0.43
Consensus pattern (92 bp):
GGTAAATTGGTTGTGTTTGAGGGTATACTTGGTTGTGTTCAGAGGTTATATATATGATGGTGTTT
GCAGGGTACATTTGGTTATGTTCGGAG
Found at i:25752801 original size:15 final size:15
Alignment explanation
Indices: 25752763--25752801 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
25752753 CTGCTTCATA
*
25752763 TAGATGATTGAATGT
1 TAGATGAATGAATGT
25752778 TAGAT-AATGAATGT
1 TAGATGAATGAATGT
*
25752792 TTGATGAATG
1 TAGATGAATG
25752802 GTATGAGTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.36, C:0.00, G:0.26, T:0.38
Consensus pattern (15 bp):
TAGATGAATGAATGT
Found at i:25754455 original size:19 final size:19
Alignment explanation
Indices: 25754431--25754467 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
25754421 AATTTGGGCC
*
25754431 GTGTGGACTACACGGGCAT
1 GTGTGGACCACACGGGCAT
*
25754450 GTGTGGGCCACACGGGCA
1 GTGTGGACCACACGGGCA
25754468 AGGCCATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.19, C:0.24, G:0.41, T:0.16
Consensus pattern (19 bp):
GTGTGGACCACACGGGCAT
Found at i:25761898 original size:20 final size:18
Alignment explanation
Indices: 25761873--25761909 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
25761863 GGTAGGATTT
25761873 TGCTACTGCATAACTGTTAC
1 TGCTACTG-AT-ACTGTTAC
25761893 TGCTACTGATACTGTTA
1 TGCTACTGATACTGTTA
25761910 TAGGCTAAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 2 0.12
20 8 0.47
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (18 bp):
TGCTACTGATACTGTTAC
Found at i:25762754 original size:26 final size:26
Alignment explanation
Indices: 25762694--25762755 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 26
25762684 TCTGTAAGTG
*
25762694 TTTTGAAACTGATACAAGCTATGATA
1 TTTTGAAACTGATACAAGCTAGGATA
* * * * *
25762720 TTCTAAAACTGATATATGTTAGGATA
1 TTTTGAAACTGATACAAGCTAGGATA
25762746 TTTTGAAACT
1 TTTTGAAACT
25762756 ACTGTAGGTA
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.39
Consensus pattern (26 bp):
TTTTGAAACTGATACAAGCTAGGATA
Found at i:25770430 original size:29 final size:30
Alignment explanation
Indices: 25770388--25770451 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
25770378 AAAGATGCAA
*
25770388 GGAGATGAGGATTTT-GGGTGAGAGGAATT
1 GGAGATGAGGATTTTAGGGAGAGAGGAATT
25770417 GGAGATGAGGATTTTAGGGAGAGAGGAATT
1 GGAGATGAGGATTTTAGGGAGAGAGGAATT
*
25770447 AGAGA
1 GGAGA
25770452 GCAGTTTTTC
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 15 0.47
30 17 0.53
ACGTcount: A:0.33, C:0.00, G:0.44, T:0.23
Consensus pattern (30 bp):
GGAGATGAGGATTTTAGGGAGAGAGGAATT
Found at i:25770442 original size:16 final size:16
Alignment explanation
Indices: 25770388--25770443 Score: 57
Period size: 16 Copynumber: 3.7 Consensus size: 16
25770378 AAAGATGCAA
25770388 GGAGATGAGGATTTTG
1 GGAGATGAGGATTTTG
* *
25770404 GGTGA-GAGGA-ATT-
1 GGAGATGAGGATTTTG
25770417 GGAGATGAGGATTTTAG
1 GGAGATGAGGATTTT-G
25770434 GGAGA-GAGGA
1 GGAGATGAGGA
25770444 ATTAGAGAGC
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
13 4 0.12
14 7 0.22
15 7 0.22
16 9 0.28
17 5 0.16
ACGTcount: A:0.30, C:0.00, G:0.46, T:0.23
Consensus pattern (16 bp):
GGAGATGAGGATTTTG
Found at i:25779021 original size:101 final size:102
Alignment explanation
Indices: 25778890--25779074 Score: 257
Period size: 101 Copynumber: 1.8 Consensus size: 102
25778880 AAAGTGATGG
* * * *
25778890 TCACATGTGTAGTACTGTGTGCAGGCTACTATATGTATCGGAATGAT-A-GGTCGCATGTGTAGT
1 TCACATGTGTAGTACTATGTGCAGGCTACTACATGTATC-AAATGATAATGGTCACATGTGTAGT
*
25778953 ACTATGTGCAGGCTACTATGCGTACCGGATAGTTTCGA
65 ACTATGTGAAGGCTACTATGCGTACCGGATAGTTTCGA
* * * *
25778991 TCACGTGTGTAGTACTATGTGGAGGCTACTACGTGTATCAAATGGTAATGGTCACATGTGTAGTA
1 TCACATGTGTAGTACTATGTGCAGGCTACTACATGTATCAAATGATAATGGTCACATGTGTAGTA
*
25779056 CTATGTGAAGGCTGCTATG
66 CTATGTGAAGGCTACTATG
25779075 TGAACCGAAC
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
100 5 0.07
101 35 0.49
102 32 0.44
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (102 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTACATGTATCAAATGATAATGGTCACATGTGTAGTA
CTATGTGAAGGCTACTATGCGTACCGGATAGTTTCGA
Found at i:25779051 original size:51 final size:50
Alignment explanation
Indices: 25778886--25779076 Score: 204
Period size: 51 Copynumber: 3.8 Consensus size: 50
25778876 AGTGAAAGTG
* * *
25778886 ATGGTCACATGTGTAGTACTGTGTGCAGGCTACTATATGTATCGGAATGAT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTATC-GAATGGT
* * * * *
25778937 A-GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTATCGAATGGT
* * * * * *
25778986 TTCGATCACGTGTGTAGTACTATGTGGAGGCTACTACGTGTATCAAATGGT
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTATCGAATGGT
* *
25779037 AATGGTCACATGTGTAGTACTATGTGAAGGCTGCTATGTG
1 -ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTG
25779077 AACCGAACAT
Statistics
Matches: 112, Mismatches: 25, Indels: 6
0.78 0.17 0.04
Matches are distributed among these distances:
49 4 0.04
50 36 0.32
51 71 0.63
52 1 0.01
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.32
Consensus pattern (50 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTATCGAATGGT
Found at i:25779185 original size:45 final size:45
Alignment explanation
Indices: 25779078--25779168 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 45
25779068 TGCTATGTGA
* * * *
25779078 ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGCTGATTCC
1 ACCGGACATCATTTATTAATAAGGTGGTTGCTATGTGCTGAATCC
*
25779123 ACCGGACATCATTTATTAATAAGGTGGTTGCTATGTGTTGAATCC
1 ACCGGACATCATTTATTAATAAGGTGGTTGCTATGTGCTGAATCC
25779168 A
1 A
25779169 TCGAGTATCT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.34
Consensus pattern (45 bp):
ACCGGACATCATTTATTAATAAGGTGGTTGCTATGTGCTGAATCC
Found at i:25788158 original size:45 final size:45
Alignment explanation
Indices: 25788109--25788672 Score: 254
Period size: 44 Copynumber: 12.7 Consensus size: 45
25788099 AGTCTTATTC
* * * *
25788109 CCCTGAAGTTGTAGTGGGGCATACTGAAGATGGCAAATCTCATCT
1 CCCTGAAGTTGCAGTGGAGCAGACTGAAGATGACAAATCTCATCT
* * *
25788154 CCCTGAAGTTGCAGTAGAGCAGA-TTAA-A-GCCAATAATC-CTATCT
1 CCCTGAAGTTGCAGTGGAGCAGACTGAAGATGAC-A-AATCTC-ATCT
* * * * * *
25788198 CCCTGAAGTTGCAGTGGAGCGGATTAAAG-TTACAAGTCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGACTGAAGATGACAAATCTCATCT
* * * ** * * *
25788242 CCCTAAAGTTGTAGTGGAGCAGACTCAAGAAAACAAGTCTTATCC
1 CCCTGAAGTTGCAGTGGAGCAGACTGAAGATGACAAATCTCATCT
* * * * * *
25788287 CCCTGATGTTACAGTGGGGTAGACTGAAGATGGCGAATCGT-ATCT
1 CCCTGAAGTTGCAGTGGAGCAGACTGAAGATGACAAATC-TCATCT
* * *
25788332 CCCTGAAGTTGTAGTGGAGCAGA-TTAA-A-GCCAATGATC-CTATCT
1 CCCTGAAGTTGCAGTGGAGCAGACTGAAGATGACAA--ATCTC-ATCT
* * * * * * * *
25788376 TCTTAAAGTTACAGTGGAGAAGATTAAAG-TTACAAATC-CTATCT
1 CCCTGAAGTTGCAGTGGAGCAGACTGAAGATGACAAATCTC-ATCT
* * * * * *
25788420 CCCTGAAGTTGCAGTGGAGCGGATTAAAG-TTACAAGTCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGACTGAAGATGACAAATCTCATCT
* * * * * *
25788464 CCCTAAAGTTGTAGTGGAGCAGACTGAAGA-AAGCAAGTCTTATCC
1 CCCTGAAGTTGCAGTGGAGCAGACTGAAGATGA-CAAATCTCATCT
* *
25788509 CCCTGAAGTTGCAGTGG-GACAAACTGAAGATGGCAAATC-CTATCT
1 CCCTGAAGTTGCAGTGGAG-CAGACTGAAGATGACAAATCTC-ATCT
* * *
25788554 CCCTGAAGTTGCACTGGAGCAGA-TTAA-A-GCCAATAATC-CTATCT
1 CCCTGAAGTTGCAGTGGAGCAGACTGAAGATGAC-A-AATCTC-ATCT
* * * * * * * *
25788598 CCCTGAGGTTTCAGTGGAGCGGATTAAAG-TTACAAGTCTTAT-T
1 CCCTGAAGTTGCAGTGGAGCAGACTGAAGATGACAAATCTCATCT
* *
25788641 CCCCTAAAGTTGCAGTGGGGCAGACTGAAGAT
1 -CCCTGAAGTTGCAGTGGAGCAGACTGAAGAT
25788673 AGCGAATCTC
Statistics
Matches: 394, Mismatches: 94, Indels: 62
0.72 0.17 0.11
Matches are distributed among these distances:
42 7 0.02
43 7 0.02
44 219 0.56
45 154 0.39
46 7 0.02
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (45 bp):
CCCTGAAGTTGCAGTGGAGCAGACTGAAGATGACAAATCTCATCT
Found at i:25788315 original size:178 final size:176
Alignment explanation
Indices: 25788010--25788684 Score: 712
Period size: 178 Copynumber: 3.8 Consensus size: 176
25788000 TGAAACCACA
* * * * *
25788010 AATCCTATCTCCCTGAGGTTGTAGTGGAGCGGATTAAAGTTACAAGTCCTATCTCCCTCAAGTTG
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTACAAATCCTATCTCCCTGAAGTTG
** * * * *
25788075 TAGTGGAATAGACTAAAGAAAGCAAGTCTTATTCCCCTGAAGTTGTAGTGGGGCATACTGAAGAT
66 TAGTGGAGCAGACTAAAGAAA-CAAGTCTTATCCCCCTAAAGTTGCAGTGGGGCAGACTGAAGAT
*
25788140 GGCAAATCTCATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCCAAT
130 AGCAAATCTCATCTCCCTGAAGTTGCAGT-GAGCAGATTAAAGCCAAT
* * * *
25788188 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTAAAGTTG
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTACAAATCCTATCTCCCTGAAGTTG
* * * * *
25788253 TAGTGGAGCAGACTCAAGAAAACAAGTCTTATCCCCCTGATGTTACAGTGGGGTAGACTGAAGAT
66 TAGTGGAGCAGACTAAAG-AAACAAGTCTTATCCCCCTAAAGTTGCAGTGGGGCAGACTGAAGAT
* * *
25788318 GGCGAATCGT-ATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCCAAT
130 AGCAAATC-TCATCTCCCTGAAGTTGCAGT-GAGCAGATTAAAGCCAAT
* * * * * *
25788366 GATCCTATCTTCTTAAAGTTACAGTGGAGAAGATTAAAGTTACAAATCCTATCTCCCTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTACAAATCCTATCTCCCTGAAGTTG
* * * ** * * * *
25788431 CAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTAAAGTTGTAGTGGAGCAGACTGAAGAAA
66 TAGTGGAGCAGACTAAAGAAACAAGTCTTATCCCCCTAAAGTTGCAGTGGGGCAGACTGAAGATA
* * * * * * *
25788496 GCAAGTCTTATCCCCCTGAAGTTGCAGTGGGACAAACTGAAGATGGC-A-
131 GCAAATCTCATCTCCCTGAAGTTGCAGTGAG-CAGA-TTAA-A-GCCAAT
* ** *
25788544 AATCCTATCTCCCTGAAGTTGCACTGGAGCAGATTAAAGCCA-ATAATCCTATCTCCCTGAGGTT
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTACA-AATCCTATCTCCCTGAAGTT
* * ** *
25788608 -TCAGTGGAGCGGATTAAAGTTACAAGTCTTATTCCCCTAAAGTTGCAGTGGGGCAGACTGAAGA
65 GT-AGTGGAGCAGACTAAAGAAACAAGTCTTATCCCCCTAAAGTTGCAGTGGGGCAGACTGAAGA
*
25788672 TAGCGAATCTCAT
129 TAGCAAATCTCAT
25788685 TTTCCTAAAG
Statistics
Matches: 420, Mismatches: 68, Indels: 18
0.83 0.13 0.04
Matches are distributed among these distances:
176 3 0.01
177 62 0.15
178 347 0.83
179 6 0.01
180 2 0.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (176 bp):
AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTACAAATCCTATCTCCCTGAAGTTG
TAGTGGAGCAGACTAAAGAAACAAGTCTTATCCCCCTAAAGTTGCAGTGGGGCAGACTGAAGATA
GCAAATCTCATCTCCCTGAAGTTGCAGTGAGCAGATTAAAGCCAAT
Found at i:25788420 original size:222 final size:222
Alignment explanation
Indices: 25788150--25788658 Score: 734
Period size: 222 Copynumber: 2.3 Consensus size: 222
25788140 GGCAAATCTC
* * * * **
25788150 ATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCCA-ATAATCCTATCTCCCTGAAGTTGCAGTG
1 ATCTCCCTAAAGTTACAGTGGAGAAGATTAAAGTTACA-AATCCTATCTCCCTGAAGTTGCAGTG
25788214 GAGCGGATTAAAGTTACAAGTCTTATCTCCCTAAAGTTGTAGTGGAGCAGACTCAAGAAAACAAG
65 GAGCGGATTAAAGTTACAAGTCTTATCTCCCTAAAGTTGTAGTGGAGCAGACTCAAGAAAACAAG
* ** * * * *
25788279 TCTTATCCCCCTGATGTTACAGTGGGGTAGACTGAAGATGGCGAATCGTATCTCCCTGAAGTTGT
130 TCTTATCCCCCTGAAGTTACAGTGGGACAAACTGAAGATGGCAAATCCTATCTCCCTGAAGTTGC
* *
25788344 AGTGGAGCAGATTAAAGCCAATGATCCT
195 ACTGGAGCAGATTAAAGCCAATAATCCT
* *
25788372 ATCTTCTTAAAGTTACAGTGGAGAAGATTAAAGTTACAAATCCTATCTCCCTGAAGTTGCAGTGG
1 ATCTCCCTAAAGTTACAGTGGAGAAGATTAAAGTTACAAATCCTATCTCCCTGAAGTTGCAGTGG
* *
25788437 AGCGGATTAAAGTTACAAGTCTTATCTCCCTAAAGTTGTAGTGGAGCAGACTGAAGAAAGCAAGT
66 AGCGGATTAAAGTTACAAGTCTTATCTCCCTAAAGTTGTAGTGGAGCAGACTCAAGAAAACAAGT
*
25788502 CTTATCCCCCTGAAGTTGCAGTGGGACAAACTGAAGATGGCAAATCCTATCTCCCTGAAGTTGCA
131 CTTATCCCCCTGAAGTTACAGTGGGACAAACTGAAGATGGCAAATCCTATCTCCCTGAAGTTGCA
25788567 CTGGAGCAGATTAAAGCCAATAATCCT
196 CTGGAGCAGATTAAAGCCAATAATCCT
* * * ** * * *
25788594 ATCTCCCTGAGGTTTCAGTGGAGCGGATTAAAGTTACAAGTCTTAT-TCCCCTAAAGTTGCAGTG
1 ATCTCCCTAAAGTTACAGTGGAGAAGATTAAAGTTACAAATCCTATCT-CCCTGAAGTTGCAGTG
25788658 G
65 G
25788659 GGCAGACTGA
Statistics
Matches: 255, Mismatches: 30, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
221 1 0.00
222 253 0.99
223 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (222 bp):
ATCTCCCTAAAGTTACAGTGGAGAAGATTAAAGTTACAAATCCTATCTCCCTGAAGTTGCAGTGG
AGCGGATTAAAGTTACAAGTCTTATCTCCCTAAAGTTGTAGTGGAGCAGACTCAAGAAAACAAGT
CTTATCCCCCTGAAGTTACAGTGGGACAAACTGAAGATGGCAAATCCTATCTCCCTGAAGTTGCA
CTGGAGCAGATTAAAGCCAATAATCCT
Found at i:25788823 original size:44 final size:43
Alignment explanation
Indices: 25788774--25789121 Score: 127
Period size: 44 Copynumber: 7.8 Consensus size: 43
25788764 TGACAAATCT
25788774 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATTC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-CAATAATTC
* * * * * *
25788818 TATCTCCTTGAAGTTGAAGTAGAGCGGATTGAAG---TGAAGTC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAAT-AATTC
* * * * * *
25788859 TTATCTCCTTGAAGTTGCAGTGGAGTAGACTGAAG-ATAGCAAGTC
1 -TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCA-A-TAATTC
* * ** * *
25788904 TCATCTCCCTGAAGATGGTAGTGGAATAGATCAAAGCTATAAATCATAAGATTT
1 T-ATCTCCCTGAAG-TTGCAGTGGAGCAGATTAAAGC-----A--AT-A-ATTC
* * * * * * * **
25788958 TATCTCTCTAAAGTTACAGTAGAGCAGATCACATCAA-ACCT-
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAATAATTC
* * *
25788999 TATCTCCCTGAAGTTGTAGTGGAGCAGGTTAAA--AATACCAATC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAATA--ATTC
*** * * *
25789042 TTATCTCCCTGAAGTTGCAGTGGAATGGATTGAAGCTACTAATCC
1 -TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC-AATAATTC
*
25789087 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC
25789122 TACAAATCCT
Statistics
Matches: 222, Mismatches: 57, Indels: 50
0.67 0.17 0.15
Matches are distributed among these distances:
39 2 0.01
40 2 0.01
41 29 0.13
42 31 0.14
43 1 0.00
44 89 0.40
45 19 0.09
46 15 0.07
47 4 0.02
52 15 0.07
53 12 0.05
54 3 0.01
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.28
Consensus pattern (43 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAATAATTC
Found at i:25788823 original size:225 final size:225
Alignment explanation
Indices: 25788542--25789120 Score: 621
Period size: 225 Copynumber: 2.6 Consensus size: 225
25788532 CTGAAGATGG
* * *
25788542 CAAATCCTATCTCCCTGAAGTTGCACTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTGAGGT
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTGAAGT
** * *
25788607 TTCAGTGGAGCGGATTAAAGTTACAAGTCTTAT-TCCCCTAAAGTTGCAGTGGGGCAGACTGAAG
66 TGAAGTAGAGCGGATTAAAG-T-CAAGTCTTATCT-CCCTAAAGTTGCAGTGGAGCAGACTGAAG
* * * * *
25788671 ATAGCGAA-TCTCATTTTCCTAAAGCT-CTAGTGAAACAAATTAAAACTATAAATCA-CAGATCT
128 ATAGC-AAGTCTCATCTCCCTAAAGATGCTAGTGAAACAAATCAAAACTATAAATCATAAGATCT
** * *
25788733 TATCTCTCTAAAGTTGTAGTAGAGTAGATCATGA-
192 TATCTCTCTAAAGTTACAGTAGAGCAGATCA-CAT
* *
25788767 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATTCTATCTCCTTGAAGT
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTGAAGT
* * * * *
25788832 TGAAGTAGAGCGGATTGAAGTGAAGTCTTATCTCCTTGAAGTTGCAGTGGAGTAGACTGAAGATA
66 TGAAGTAGAGCGGATTAAAGTCAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGATA
* * * * * * *
25788897 GCAAGTCTCATCTCCCTGAAGATGGTAGTGGAATAGATCAAAGCTATAAATCATAAGATTTTATC
131 GCAAGTCTCATCTCCCTAAAGATGCTAGTGAAACAAATCAAAACTATAAATCATAAGATCTTATC
25788962 TCTCTAAAGTTACAGTAGAGCAGATCACAT
196 TCTCTAAAGTTACAGTAGAGCAGATCACAT
* * * *** ** *
25788992 CAAACCTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTAAAAATACCAATCTTATCTCCCTGAAGT
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTGAAGT
* * ** * * * *
25789057 TGCAGTGGAATGGATTGAAGCTACTAA-TCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
66 TGAAGTAGAGCGGATTAAAG-T-C-AAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAG
25789121 CTACAAATCC
Statistics
Matches: 296, Mismatches: 50, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
222 2 0.01
223 53 0.18
224 26 0.09
225 179 0.60
226 1 0.00
227 33 0.11
228 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (225 bp):
CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTGAAGT
TGAAGTAGAGCGGATTAAAGTCAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGATA
GCAAGTCTCATCTCCCTAAAGATGCTAGTGAAACAAATCAAAACTATAAATCATAAGATCTTATC
TCTCTAAAGTTACAGTAGAGCAGATCACAT
Found at i:25788893 original size:42 final size:45
Alignment explanation
Indices: 25788818--25788917 Score: 116
Period size: 42 Copynumber: 2.3 Consensus size: 45
25788808 CCAATAATTC
* *
25788818 TATCTCCTTGAAGTTGAAGTAGAGCGGATTGAAG-T-G-AAGTCT
1 TATCTCCTTGAAGTTGAAGTAGAGCAGACTGAAGATAGCAAGTCT
* * *
25788860 TATCTCCTTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAGTCT
1 TATCTCCTTGAAGTTGAAGTAGAGCAGACTGAAGATAGCAAGTCT
* *
25788905 CATCTCCCTGAAG
1 TATCTCCTTGAAG
25788918 ATGGTAGTGG
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
42 29 0.60
43 1 0.02
44 1 0.02
45 17 0.35
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (45 bp):
TATCTCCTTGAAGTTGAAGTAGAGCAGACTGAAGATAGCAAGTCT
Found at i:25789122 original size:44 final size:44
Alignment explanation
Indices: 25788999--25789164 Score: 181
Period size: 44 Copynumber: 3.8 Consensus size: 44
25788989 CATCAAACCT
* * * ** * *
25788999 TATCTCCCTGAAGTTGTAGTGGAGCAGGTTAAAAATACCAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCC
*** *
25789043 TATCTCCCTGAAGTTGCAGTGGAATGGATTGAAGCTACTAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCC
25789087 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCC
* * * *
25789131 TATCTCCTTGAA-TTAGCAGCGAAGCAGATGGAAG
1 TATCTCCCTGAAGTT-GCAGTGGAGCAGATTGAAG
25789165 ACACCAGCCT
Statistics
Matches: 103, Mismatches: 18, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
43 2 0.02
44 101 0.98
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (44 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCC
Found at i:25789209 original size:44 final size:44
Alignment explanation
Indices: 25789146--25789371 Score: 111
Period size: 45 Copynumber: 5.1 Consensus size: 44
25789136 CCTTGAATTA
*
25789146 GCAGCGAAGCAGATGGAAGACACCAGCCTTGCCTCCCTGAGTTT
1 GCAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGAGTTT
* * * * ** * *
25789190 GCAGCGGAGCAGA-CTGAAGATAGCAGATCTTATCT-TCTTA-TATT
1 GCAGCGAAGCAGATC-GAAGACACCAG-CCTTGCCTCCCTGAGT-TT
* * *
25789234 GGCAACAAAGCAGATCGAAGACACCAACCTTGCCTCCCTGAGTTT
1 -GCAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGAGTTT
* * * * * * * * * * *
25789279 GTAGTGGAGCAGA-CTGAAAATAACAGATCTTGTCTTCCTGTA-CTG
1 GCAGCGAAGCAGATC-GAAGACACCAG-CCTTGCCTCCCTG-AGTTT
* * * *
25789324 GTAGTGAAGCAGATCGAAAACACCAGCCTTGCCTCTCTGAGTTT
1 GCAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGAGTTT
25789368 GCAG
1 GCAG
25789372 TGGAGTAGGT
Statistics
Matches: 126, Mismatches: 44, Indels: 24
0.65 0.23 0.12
Matches are distributed among these distances:
43 3 0.02
44 59 0.47
45 60 0.48
46 4 0.03
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.23
Consensus pattern (44 bp):
GCAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGAGTTT
Found at i:25789265 original size:89 final size:88
Alignment explanation
Indices: 25789090--25789376 Score: 335
Period size: 89 Copynumber: 3.2 Consensus size: 88
25789080 CTAATCCTAT
* * * * * *
25789090 CTCCCTGAAG-TTGCAGTGGAGCAGATTGAAGCTACAAATCCTATCTCCTTGA-ATTAGCAGCGA
1 CTCCCTG-AGTTTGCAGTGGAGCAGACTGAAGATACAGATCTTATCTTCTT-ATATTGGCAGCGA
*
25789153 AGCAGATGGAAGACACCAGCCTTGC
64 AGCAGATCGAAGACACCAGCCTTGC
* * *
25789178 CTCCCTGAGTTTGCAGCGGAGCAGACTGAAGATAGCAGATCTTATCTTCTTATATTGGCAACAAA
1 CTCCCTGAGTTTGCAGTGGAGCAGACTGAAGATA-CAGATCTTATCTTCTTATATTGGCAGCGAA
*
25789243 GCAGATCGAAGACACCAACCTTGC
65 GCAGATCGAAGACACCAGCCTTGC
* * * * * * * *
25789267 CTCCCTGAGTTTGTAGTGGAGCAGACTGAAAATAACAGATCTTGTCTTCCTGTACTGGTAGTGAA
1 CTCCCTGAGTTTGCAGTGGAGCAGACTGAAGAT-ACAGATCTTATCTTCTTATATTGGCAGCGAA
*
25789332 GCAGATCGAAAACACCAGCCTTGC
65 GCAGATCGAAGACACCAGCCTTGC
*
25789356 CTCTCTGAGTTTGCAGTGGAG
1 CTCCCTGAGTTTGCAGTGGAG
25789377 TAGGTTGAAG
Statistics
Matches: 169, Mismatches: 26, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
87 2 0.01
88 29 0.17
89 137 0.81
90 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24
Consensus pattern (88 bp):
CTCCCTGAGTTTGCAGTGGAGCAGACTGAAGATACAGATCTTATCTTCTTATATTGGCAGCGAAG
CAGATCGAAGACACCAGCCTTGC
Found at i:25789660 original size:130 final size:133
Alignment explanation
Indices: 25789370--25789744 Score: 469
Period size: 130 Copynumber: 2.8 Consensus size: 133
25789360 CTGAGTTTGC
* * * *
25789370 AGTGGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGCAATTGTGAAGCAGATCAG-ATACG
1 AGTGGAGTAGGTTGAAGATTGTACATCCTGTCTCCCTAAGCAATAGTGGAGCAGATCAGAAGACG
* * * * *
25789434 ACGAATCTTATCTTCCCAAGGTAGTA-AGGAAGCAAATTTAAGACAGCAGTCCTATCTCCGTGAG
66 ACGAATCTTATCTTCCC--GATAGTAGAGGAAGCAAATTTAAGCCACCAGTCCTATCCCCCTGAG
25789498 CAACT
129 CAACT
* * * * *
25789503 -GTGGAGTAGGTTGAAGATTGTACATCCTATCTTCCTAAGCAGTAGTGGAGGAGAT-AGAAGATG
1 AGTGGAGTAGGTTGAAGATTGTACATCCTGTCTCCCTAAGCAATAGTGGAGCAGATCAGAAGACG
* * *
25789566 ACAAATCTTATCTTCCCGATA-TAGAGGAAGCAAATTTAAGCCACCAGTCGTATCCCCCTGAG-T
66 ACGAATCTTATCTTCCCGATAGTAGAGGAAGCAAATTTAAGCCACCAGTCCTATCCCCCTGAGCA
*
25789629 AGT
131 ACT
*
25789632 AGTGGAGTAGGTTGAAGATTGTATATCCTGTCTCCCTAAGCAATAGTGGAGCAGATCA-AAGACG
1 AGTGGAGTAGGTTGAAGATTGTACATCCTGTCTCCCTAAGCAATAGTGGAGCAGATCAGAAGACG
* *
25789696 ACGAGTCTTATCTTCCCGAGGTAGTAG-GGAAGCAGATTTAAGCCACCAG
66 ACGAATCTTATCTTCCCGA--TAGTAGAGGAAGCAAATTTAAGCCACCAG
25789745 ACTTCTCTCC
Statistics
Matches: 208, Mismatches: 27, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
129 4 0.02
130 108 0.52
131 3 0.01
132 90 0.43
133 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (133 bp):
AGTGGAGTAGGTTGAAGATTGTACATCCTGTCTCCCTAAGCAATAGTGGAGCAGATCAGAAGACG
ACGAATCTTATCTTCCCGATAGTAGAGGAAGCAAATTTAAGCCACCAGTCCTATCCCCCTGAGCA
ACT
Found at i:25793839 original size:37 final size:36
Alignment explanation
Indices: 25793761--25793852 Score: 98
Period size: 37 Copynumber: 2.4 Consensus size: 36
25793751 TTAAATTTAA
25793761 TATTAAAATAATCACTTTAATATTAAATTAATAAAATAC
1 TATTAAAATAAT-A--TTAATATTAAATTAATAAAATAC
* *
25793800 TATTAAGATAAGTATTAA-ATTAAATTTAATATTAA-AC
1 TATTAAAATAA-TATTAATATTAAA-TTAATA-AAATAC
25793837 TATTAAAATAATATTA
1 TATTAAAATAATATTA
25793853 TTTTTGGAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
36 11 0.23
37 22 0.47
38 2 0.04
39 11 0.23
40 1 0.02
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.40
Consensus pattern (36 bp):
TATTAAAATAATATTAATATTAAATTAATAAAATAC
Found at i:25795461 original size:17 final size:17
Alignment explanation
Indices: 25795439--25795479 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
25795429 AGATCTCTGA
25795439 CGAGCTTCCAAACCGAT
1 CGAGCTTCCAAACCGAT
*
25795456 CGAGCTTCCAAACCGGT
1 CGAGCTTCCAAACCGAT
25795473 CGAGCTT
1 CGAGCTT
25795480 TCGATAATCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.24, C:0.34, G:0.22, T:0.20
Consensus pattern (17 bp):
CGAGCTTCCAAACCGAT
Found at i:25795754 original size:20 final size:20
Alignment explanation
Indices: 25795727--25795778 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
25795717 TATGAACTAC
25795727 TCCATTTACTTACTTTACAT
1 TCCATTTACTTACTTTACAT
* * *
25795747 TTCATTTACTTTCTTTCCAT
1 TCCATTTACTTACTTTACAT
25795767 TCCATTTACTTA
1 TCCATTTACTTA
25795779 GCATAAGCTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.21, C:0.25, G:0.00, T:0.54
Consensus pattern (20 bp):
TCCATTTACTTACTTTACAT
Found at i:25812920 original size:15 final size:15
Alignment explanation
Indices: 25812897--25812931 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
25812887 AAAGAGTTCA
*
25812897 AGTATGATTAAACTT
1 AGTACGATTAAACTT
25812912 AGTACGATTAAACTT
1 AGTACGATTAAACTT
25812927 AGTAC
1 AGTAC
25812932 TTTAATACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.34
Consensus pattern (15 bp):
AGTACGATTAAACTT
Found at i:25814771 original size:16 final size:16
Alignment explanation
Indices: 25814750--25814780 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
25814740 CTATGCATGT
*
25814750 AAAATATAAAAGACAA
1 AAAATAAAAAAGACAA
25814766 AAAATAAAAAAGACA
1 AAAATAAAAAAGACA
25814781 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.77, C:0.06, G:0.06, T:0.10
Consensus pattern (16 bp):
AAAATAAAAAAGACAA
Found at i:25816601 original size:50 final size:50
Alignment explanation
Indices: 25816547--25816651 Score: 158
Period size: 50 Copynumber: 2.1 Consensus size: 50
25816537 ATTGAGGTTG
*
25816547 TGAGAGGTCCCACGTAAGATCATGTCTGGGACATGGCATTGG-CACCGAGA
1 TGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCA-TGGACACCGAGA
* * *
25816597 TGAGAGGTCCCCCGTAAGACCCTGTCTGGGACATGGCATGGACACCGATA
1 TGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATGGACACCGAGA
25816647 TGAGA
1 TGAGA
25816652 ACTATCATGT
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
49 3 0.06
50 47 0.94
ACGTcount: A:0.26, C:0.24, G:0.31, T:0.19
Consensus pattern (50 bp):
TGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATGGACACCGAGA
Found at i:25816664 original size:50 final size:49
Alignment explanation
Indices: 25816556--25816732 Score: 135
Period size: 50 Copynumber: 3.6 Consensus size: 49
25816546 GTGAGAGGTC
* ** *
25816556 CCACGTAAGATCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTC
1 CCACGTAAGACCATGTCTGGGACATGGCA-TGGCACCGAGATGAGAACTA
* * *
25816606 CCCCGTAAGACCCTGTCTGGGACATGGCATGGACACCGATATGAGAACTA
1 CCACGTAAGACCATGTCTGGGACATGGCATGG-CACCGAGATGAGAACTA
* * * * * * * *
25816656 TCATGTAAGACCATATCTAGGATATGGCATTGGCA--GTACAAGA-AACATC
1 CCACGTAAGACCATGTCTGGGACATGGCA-TGGCACCG-AGATGAGAAC-TA
* *
25816705 CCATGTAAGACCATGTCTGTGACATGGC
1 CCACGTAAGACCATGTCTGGGACATGGC
25816733 TTTGGCATGT
Statistics
Matches: 101, Mismatches: 22, Indels: 9
0.77 0.17 0.07
Matches are distributed among these distances:
48 4 0.04
49 31 0.31
50 63 0.62
51 3 0.03
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.21
Consensus pattern (49 bp):
CCACGTAAGACCATGTCTGGGACATGGCATGGCACCGAGATGAGAACTA
Found at i:25816967 original size:20 final size:20
Alignment explanation
Indices: 25816942--25816990 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
25816932 TGAGTTATTT
25816942 AAGTAAGCAAGTAAGTAAAC
1 AAGTAAGCAAGTAAGTAAAC
*
25816962 AAGTAAG-AGAGTAAGTAAAG
1 AAGTAAGCA-AGTAAGTAAAC
25816982 AAG-AAGCAA
1 AAGTAAGCAA
25816991 AGACCATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.57, C:0.06, G:0.24, T:0.12
Consensus pattern (20 bp):
AAGTAAGCAAGTAAGTAAAC
Found at i:25823659 original size:34 final size:34
Alignment explanation
Indices: 25823616--25823683 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
25823606 TCCTCTGTTT
25823616 TCACCTAGTGATGAAGATTAGGATAATTTTAATA
1 TCACCTAGTGATGAAGATTAGGATAATTTTAATA
*
25823650 TCACCTAGTGATGAAGATTGGGATAATTTTAATA
1 TCACCTAGTGATGAAGATTAGGATAATTTTAATA
25823684 CACTCATATC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (34 bp):
TCACCTAGTGATGAAGATTAGGATAATTTTAATA
Found at i:25824136 original size:23 final size:22
Alignment explanation
Indices: 25824101--25824146 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
25824091 ATTGATAATA
*
25824101 TGTTTTGATATAAAAAATTAAAG
1 TGTTTTGAAAT-AAAAATTAAAG
*
25824124 TGTTTTTAAATAAAAATTAAAG
1 TGTTTTGAAATAAAAATTAAAG
25824146 T
1 T
25824147 TGAAAAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (22 bp):
TGTTTTGAAATAAAAATTAAAG
Found at i:25827171 original size:27 final size:27
Alignment explanation
Indices: 25827140--25827317 Score: 189
Period size: 27 Copynumber: 6.6 Consensus size: 27
25827130 TAAATTGTAC
25827140 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
25827167 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25827193 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
25827221 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
25827249 AGCACTAAGTGTGCGATTTGA-TTTCGT
1 AGCACTAAGTGTGCGATTTGACTAT-GT
* * *
25827276 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
**
25827303 AGCACTGTGTGTGCG
1 AGCACTAAGTGTGCG
25827318 GACTCAATAT
Statistics
Matches: 127, Mismatches: 19, Indels: 10
0.81 0.12 0.06
Matches are distributed among these distances:
26 2 0.02
27 100 0.79
28 25 0.20
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:25831964 original size:24 final size:24
Alignment explanation
Indices: 25831920--25831991 Score: 58
Period size: 24 Copynumber: 3.0 Consensus size: 24
25831910 TATAACAAGA
*
25831920 AGCTCACAAAGAG-CCTATAACGGGT
1 AGCTC-CAAAGAGTCAT-TAACGGGT
* *
25831945 AGCTCCAAAGAGTCATTAACAGAT
1 AGCTCCAAAGAGTCATTAACGGGT
**
25831969 AGCTCTGAAGAGAT-ATTAACGGG
1 AGCTCCAAAGAG-TCATTAACGGG
25831992 AAGCACCGGA
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
24 30 0.79
25 8 0.21
ACGTcount: A:0.38, C:0.19, G:0.24, T:0.19
Consensus pattern (24 bp):
AGCTCCAAAGAGTCATTAACGGGT
Found at i:25832065 original size:26 final size:27
Alignment explanation
Indices: 25832032--25832094 Score: 69
Period size: 26 Copynumber: 2.4 Consensus size: 27
25832022 CAAGCGAGCA
25832032 TTAA-CGGGAAGCTCACAAAGAGCC-T
1 TTAATCGGGAAGCTCACAAAGAGCCAT
* * *
25832057 TTAATCGGGAATCTTACGAAGAGCCAT
1 TTAATCGGGAAGCTCACAAAGAGCCAT
*
25832084 ATAAT-GGGAAG
1 TTAATCGGGAAG
25832095 ATCATTGAAG
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
25 4 0.13
26 22 0.71
27 5 0.16
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (27 bp):
TTAATCGGGAAGCTCACAAAGAGCCAT
Found at i:25836585 original size:27 final size:27
Alignment explanation
Indices: 25836555--25836731 Score: 149
Period size: 27 Copynumber: 6.5 Consensus size: 27
25836545 ATTCAGCCCA
* *
25836555 CACACTCAGTGCTATATAATCAACTCG
1 CACACTTAGTGCTACATAATCAACTCG
* * *
25836582 CACACATTAGTGCCACGTAATCAAATCG
1 CACAC-TTAGTGCTACATAATCAACTCG
*
25836610 CACACTTAGTGCTACATAGTCAGACTCG
1 CACACTTAGTGCTACATAATCA-ACTCG
* ** ** *
25836638 CACTCTTAGTGCCGCATGGTCAATTCG
1 CACACTTAGTGCTACATAATCAACTCG
* **
25836665 CACACTTAGTGC-ATCATATTCATTTCG
1 CACACTTAGTGCTA-CATAATCAACTCG
* * *
25836692 CACACTTAGTGCAACATAGTCAAATCG
1 CACACTTAGTGCTACATAATCAACTCG
*
25836719 CACCCTTAGTGCT
1 CACACTTAGTGCT
25836732 GTACAATTTA
Statistics
Matches: 122, Mismatches: 24, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
27 77 0.63
28 45 0.37
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CACACTTAGTGCTACATAATCAACTCG
Found at i:25836647 original size:55 final size:54
Alignment explanation
Indices: 25836555--25836731 Score: 194
Period size: 55 Copynumber: 3.2 Consensus size: 54
25836545 ATTCAGCCCA
* * * *
25836555 CACACTCAGTGCTATATAATCAACTCGCACACATTAGTGCCACGTAATCAAATCG
1 CACACTTAGTGCTACATAATCAACTCGCACAC-TTAGTGCCACATAGTCAAATCG
* * * * *
25836610 CACACTTAGTGCTACATAGTCAGACTCGCACTCTTAGTGCCGCATGGTCAATTCG
1 CACACTTAGTGCTACATAATCA-ACTCGCACACTTAGTGCCACATAGTCAAATCG
* ** *
25836665 CACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCG
1 CACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCCACATAGTCAAATCG
*
25836719 CACCCTTAGTGCT
1 CACACTTAGTGCT
25836732 GTACAATTTA
Statistics
Matches: 101, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
54 37 0.37
55 55 0.54
56 9 0.09
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (54 bp):
CACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAATCG
Found at i:25841441 original size:24 final size:23
Alignment explanation
Indices: 25841414--25841458 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 23
25841404 AAGATTAAAT
* *
25841414 ACATACATTTCATATTATTATTTA
1 ACATACATGTCAGA-TATTATTTA
*
25841438 ACATTCATGTCAGATATTATT
1 ACATACATGTCAGATATTATT
25841459 CATAAAGTCC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 7 0.39
24 11 0.61
ACGTcount: A:0.36, C:0.13, G:0.04, T:0.47
Consensus pattern (23 bp):
ACATACATGTCAGATATTATTTA
Found at i:25843958 original size:21 final size:23
Alignment explanation
Indices: 25843913--25843959 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
25843903 TCACCTGCAA
* *
25843913 TAAACACATTAAAATGAGTTTAT
1 TAAACACATTAAAATCAGCTTAT
25843936 TAAACACATTAAAA-CA-CTTAT
1 TAAACACATTAAAATCAGCTTAT
25843957 TAA
1 TAA
25843960 TCATAACACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 7 0.32
22 1 0.05
23 14 0.64
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (23 bp):
TAAACACATTAAAATCAGCTTAT
Found at i:25849318 original size:18 final size:16
Alignment explanation
Indices: 25849295--25849333 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 16
25849285 CTTCTTCTTC
25849295 TTTTTTCACGAAAATTTT
1 TTTTTTCACG--AATTTT
*
25849313 TTTTTTCGCGAATTTT
1 TTTTTTCACGAATTTT
25849329 TTTTT
1 TTTTT
25849334 CAACTTGATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 11 0.55
18 9 0.45
ACGTcount: A:0.18, C:0.10, G:0.08, T:0.64
Consensus pattern (16 bp):
TTTTTTCACGAATTTT
Found at i:25849391 original size:12 final size:12
Alignment explanation
Indices: 25849374--25849420 Score: 85
Period size: 12 Copynumber: 3.8 Consensus size: 12
25849364 TGGAAACCAA
25849374 AATTTTTTTTTG
1 AATTTTTTTTTG
25849386 AATTTTTTTTTG
1 AATTTTTTTTTG
25849398 AATTTCTTTTTTG
1 AATTT-TTTTTTG
25849411 AATTTTTTTT
1 AATTTTTTTT
25849421 GAAGAAACTA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
12 22 0.65
13 12 0.35
ACGTcount: A:0.17, C:0.02, G:0.06, T:0.74
Consensus pattern (12 bp):
AATTTTTTTTTG
Found at i:25849394 original size:13 final size:13
Alignment explanation
Indices: 25849376--25849420 Score: 74
Period size: 13 Copynumber: 3.5 Consensus size: 13
25849366 GAAACCAAAA
25849376 TTTTTTTTTGAA-
1 TTTTTTTTTGAAT
25849388 TTTTTTTTTGAAT
1 TTTTTTTTTGAAT
*
25849401 TTCTTTTTTGAAT
1 TTTTTTTTTGAAT
25849414 TTTTTTT
1 TTTTTTT
25849421 GAAGAAACTA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
12 12 0.40
13 18 0.60
ACGTcount: A:0.13, C:0.02, G:0.07, T:0.78
Consensus pattern (13 bp):
TTTTTTTTTGAAT
Found at i:25849423 original size:24 final size:24
Alignment explanation
Indices: 25849374--25849420 Score: 85
Period size: 25 Copynumber: 1.9 Consensus size: 24
25849364 TGGAAACCAA
25849374 AATTTTTTTTTGAATTTTTTTTTG
1 AATTTTTTTTTGAATTTTTTTTTG
25849398 AATTTCTTTTTTGAATTTTTTTT
1 AATTT-TTTTTTGAATTTTTTTT
25849421 GAAGAAACTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.17, C:0.02, G:0.06, T:0.74
Consensus pattern (24 bp):
AATTTTTTTTTGAATTTTTTTTTG
Found at i:25850455 original size:21 final size:23
Alignment explanation
Indices: 25850410--25850456 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
25850400 TCACCTGCAA
* *
25850410 TAAACACATTAAAATGAGTTTAT
1 TAAACACATTAAAATCAGCTTAT
25850433 TAAACACATTAAAA-CA-CTTAT
1 TAAACACATTAAAATCAGCTTAT
25850454 TAA
1 TAA
25850457 TCATAACACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 7 0.32
22 1 0.05
23 14 0.64
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (23 bp):
TAAACACATTAAAATCAGCTTAT
Found at i:25851328 original size:21 final size:21
Alignment explanation
Indices: 25851304--25851343 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
25851294 ATTTAACATG
* *
25851304 AATTGAATACAATTTACATTC
1 AATTCAATACAATTCACATTC
*
25851325 AATTCAATCCAATTCACAT
1 AATTCAATACAATTCACAT
25851344 CTTAGGCAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.20, G:0.03, T:0.35
Consensus pattern (21 bp):
AATTCAATACAATTCACATTC
Found at i:25852644 original size:18 final size:18
Alignment explanation
Indices: 25852586--25852651 Score: 96
Period size: 18 Copynumber: 3.6 Consensus size: 18
25852576 TAACTAAGTA
*
25852586 AGTTAAAAGAACTTAGTG
1 AGTTTAAAGAACTTAGTG
* *
25852604 AGTTCAAAGAACCTAGTG
1 AGTTTAAAGAACTTAGTG
25852622 AGTTTAAAGAACTTAGTG
1 AGTTTAAAGAACTTAGTG
25852640 AGTTTAAGAGAA
1 AGTTTAA-AGAA
25852652 AGACATTGCA
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
18 39 0.91
19 4 0.09
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27
Consensus pattern (18 bp):
AGTTTAAAGAACTTAGTG
Found at i:25854199 original size:27 final size:27
Alignment explanation
Indices: 25854102--25854200 Score: 128
Period size: 27 Copynumber: 3.6 Consensus size: 27
25854092 ACAAAATTTT
*
25854102 CCACAAAGGC-ATTCCTTTCAGAGTTCG
1 CCACAAAGGCTATT-CTTTCAGAGTTTG
* *
25854129 CCACAAAGGTTATTTCTTTCAGACTTTG
1 CCACAAAGGCTA-TTCTTTCAGAGTTTG
*
25854157 CCACAAAGTCTATTCTTTCAGAGTTTG
1 CCACAAAGGCTATTCTTTCAGAGTTTG
*
25854184 GCACAAAGGCTATTCTT
1 CCACAAAGGCTATTCTT
25854201 AGCTGTCATG
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
27 38 0.61
28 22 0.35
29 2 0.03
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.33
Consensus pattern (27 bp):
CCACAAAGGCTATTCTTTCAGAGTTTG
Found at i:25855361 original size:28 final size:28
Alignment explanation
Indices: 25855329--25855385 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
25855319 TTCTCTTTAA
25855329 TACAGGGTAGAATATCAGAAAATCAAAT
1 TACAGGGTAGAATATCAGAAAATCAAAT
25855357 TACAGGGTAGAATATCAGAAAATCAAAT
1 TACAGGGTAGAATATCAGAAAATCAAAT
25855385 T
1 T
25855386 CTTACTTACT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.49, C:0.11, G:0.18, T:0.23
Consensus pattern (28 bp):
TACAGGGTAGAATATCAGAAAATCAAAT
Found at i:25873406 original size:39 final size:40
Alignment explanation
Indices: 25873289--25873469 Score: 210
Period size: 40 Copynumber: 4.5 Consensus size: 40
25873279 GCTACTCGTT
* *
25873289 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCTGGATT-TAGTAACTCGCA
*
25873329 CAAATGCCTTCGGGACTTAACCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCTGGATTTAGTAACTCGCA
* *
25873369 CAAATGCCTTCGGG-CTTAGCCTGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCTGGATTTAGTAACTCGCA
* * * *
25873408 CAAATGCCTTC-GGATCTTAGTCC-GGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAG-CCTGGATTTAGTAAC-TCGCA
25873449 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
25873470 CGGACATCAT
Statistics
Matches: 123, Mismatches: 12, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
38 2 0.02
39 35 0.28
40 71 0.58
41 15 0.12
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCTGGATTTAGTAACTCGCA
Found at i:25873457 original size:79 final size:80
Alignment explanation
Indices: 25873289--25873469 Score: 210
Period size: 79 Copynumber: 2.3 Consensus size: 80
25873279 GCTACTCGTT
* * *
25873289 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCTG
1 CAAATGCCTTCGGGACTTAGCCTGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCTG
* *
25873353 GATTTAGTAACTCGCA
65 GATATAGTAACTAGCA
* *
25873369 CAAATGCCTTCGGG-CTTAGCCTGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC-
1 CAAATGCCTTCGGGACTTAGCCTGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTA-ACCT
* *
25873431 GGATATGGTCACTTAGCA
64 GGATATAGTAAC-TAGCA
25873449 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
25873470 CGGACATCAT
Statistics
Matches: 87, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
78 3 0.03
79 52 0.60
80 32 0.37
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCTGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCTGG
ATATAGTAACTAGCA
Found at i:25882076 original size:39 final size:40
Alignment explanation
Indices: 25881975--25882084 Score: 134
Period size: 40 Copynumber: 2.8 Consensus size: 40
25881965 AAGGACACAT
* * * *
25881975 ATGTGCATACAGGGGTACTGAAGTACAAATAGGGTCATAG
1 ATGTGCATTCAAGGGTACCGAAGTACAAACAGGGTCATAG
** *
25882015 ATGTGCATTCAAATGTATCGAAGTACAAACAGAGG-CATAG
1 ATGTGCATTCAAGGGTACCGAAGTACAAACAG-GGTCATAG
25882055 AT-TGCATTCAAGGGTACCGAAGTACAAACA
1 ATGTGCATTCAAGGGTACCGAAGTACAAACA
25882085 TGGGCACTTC
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
39 25 0.42
40 32 0.54
41 2 0.03
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (40 bp):
ATGTGCATTCAAGGGTACCGAAGTACAAACAGGGTCATAG
Found at i:25885915 original size:18 final size:18
Alignment explanation
Indices: 25885892--25885937 Score: 92
Period size: 18 Copynumber: 2.6 Consensus size: 18
25885882 ATGTTGATTC
25885892 ATGAGGGGATTAGTGGAA
1 ATGAGGGGATTAGTGGAA
25885910 ATGAGGGGATTAGTGGAA
1 ATGAGGGGATTAGTGGAA
25885928 ATGAGGGGAT
1 ATGAGGGGAT
25885938 CAGTTCATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.33, C:0.00, G:0.46, T:0.22
Consensus pattern (18 bp):
ATGAGGGGATTAGTGGAA
Found at i:25888378 original size:22 final size:20
Alignment explanation
Indices: 25888335--25888373 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
25888325 CAATTTAAAA
25888335 TATAAAAATTTATTAATATG
1 TATAAAAATTTATTAATATG
*
25888355 TATATAAATTTATTAATAT
1 TATAAAAATTTATTAATAT
25888374 ATGTAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (20 bp):
TATAAAAATTTATTAATATG
Found at i:25888496 original size:20 final size:20
Alignment explanation
Indices: 25888471--25888510 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
25888461 AAATATTTTC
25888471 AGTAAATCATTTTCCAGAAA
1 AGTAAATCATTTTCCAGAAA
25888491 AGTAAATCATTTTCCAGAAA
1 AGTAAATCATTTTCCAGAAA
25888511 TCATTTTTCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.15, G:0.10, T:0.30
Consensus pattern (20 bp):
AGTAAATCATTTTCCAGAAA
Found at i:25889137 original size:24 final size:24
Alignment explanation
Indices: 25889105--25889176 Score: 117
Period size: 24 Copynumber: 3.0 Consensus size: 24
25889095 TTTTACTGCA
25889105 ATATTCAGTGGCTTGACCACAACG
1 ATATTCAGTGGCTTGACCACAACG
*
25889129 ATATTCAGTGGCTTGACCACAATG
1 ATATTCAGTGGCTTGACCACAACG
* *
25889153 TTATTCAGTGGCTTGACCCCAACG
1 ATATTCAGTGGCTTGACCACAACG
25889177 TGCAGCTTGT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (24 bp):
ATATTCAGTGGCTTGACCACAACG
Found at i:25894108 original size:21 final size:21
Alignment explanation
Indices: 25894062--25894108 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
25894052 TTCAGTGGTA
* *
25894062 ATTTTTATTTCTTTTGTTATT
1 ATTTTTATTTCTTATGTTACT
*
25894083 GTTTTTATTTACTTAT-TTACT
1 ATTTTTATTT-CTTATGTTACT
25894104 ATTTT
1 ATTTT
25894109 GCCTGGGTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.17, C:0.06, G:0.04, T:0.72
Consensus pattern (21 bp):
ATTTTTATTTCTTATGTTACT
Found at i:25899111 original size:23 final size:25
Alignment explanation
Indices: 25899085--25899146 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 25
25899075 AGTTACATAC
*
25899085 AAAGAGAGCATTATATATC-ATT-T
1 AAAGAGAGCATTATATATCAATTAA
25899108 AAAG-GAGC-TGT-TATATCAATTAA
1 AAAGAGAGCAT-TATATATCAATTAA
25899131 AAAGGAGAGCATTATA
1 AAA-GAGAGCATTATA
25899147 CCTCCTTAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 11
0.72 0.02 0.26
Matches are distributed among these distances:
21 7 0.23
22 8 0.26
23 7 0.23
24 1 0.03
25 5 0.16
26 3 0.10
ACGTcount: A:0.45, C:0.08, G:0.18, T:0.29
Consensus pattern (25 bp):
AAAGAGAGCATTATATATCAATTAA
Found at i:25910463 original size:19 final size:19
Alignment explanation
Indices: 25910441--25910478 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
25910431 TCAATCATCC
25910441 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
25910460 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
25910479 ACTCCCTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:25912880 original size:50 final size:50
Alignment explanation
Indices: 25912752--25913037 Score: 296
Period size: 50 Copynumber: 5.7 Consensus size: 50
25912742 GATAATAACA
* * *
25912752 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTT-TCCTGTAT--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATAT-TGG
* * *
25912801 TGCCAATGTCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATTGG
* * ** *
25912851 TGCCCATTCCATGTCCCAGACATGGTCTT--ATGGGGAACCTCTCATCTCT-G
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAT-GGG-AGTTCTCATAT-TGG
*
25912901 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATTGG
* * * ** * *
25912951 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATTGG
* *
25913001 TGCCAACGCCATATCCCAGACATGGTCTTACATGGGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
25913038 CCTCTTTACC
Statistics
Matches: 195, Mismatches: 33, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
48 6 0.03
49 41 0.21
50 142 0.73
51 4 0.02
52 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATTGG
Found at i:25912932 original size:100 final size:100
Alignment explanation
Indices: 25912801--25913037 Score: 404
Period size: 100 Copynumber: 2.4 Consensus size: 100
25912791 TTTCCTGTAT
* * * *
25912801 TGCCAATGTCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATTGGTGCCCATTCCATGTC
1 TGCCAACGCCATATCCCAGACATGGTCTTACATGGGAGTTCTCATATTGGTGCCCATGCCATGTC
*
25912866 CCAGACATGGTCTTAT-GGGGAACCTCTCATCTCTG
66 CCAGACATGGTCTTATAGGGG-ACCTCTCATCTCGG
*
25912901 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATTGGTGCCCATGCCATGTC
1 TGCCAACGCCATATCCCAGACATGGTCTTACATGGGAGTTCTCATATTGGTGCCCATGCCATGTC
25912966 CCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
66 CCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
25913001 TGCCAACGCCATATCCCAGACATGGTCTTACATGGGA
1 TGCCAACGCCATATCCCAGACATGGTCTTACATGGGA
25913038 CCTCTTTACC
Statistics
Matches: 129, Mismatches: 7, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
100 125 0.97
101 4 0.03
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (100 bp):
TGCCAACGCCATATCCCAGACATGGTCTTACATGGGAGTTCTCATATTGGTGCCCATGCCATGTC
CCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
Found at i:25913042 original size:150 final size:149
Alignment explanation
Indices: 25912752--25913030 Score: 364
Period size: 150 Copynumber: 1.9 Consensus size: 149
25912742 GATAATAACA
* * *
25912752 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCCTGTATTGCCAATGTCATATCC
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCATATATTGCCAATGCCATATCC
* * ** * * ** *
25912817 CAGATATGGTCTTACATGGGAGTTCTCATATTGGTGCCCATTCCATGTCCCAGACATGGTCTTAT
66 CAGACATGGTCTTACAGGGGACCTCTCATATCGGTGCCAACGCCATATCCCAGACATGGTCTTAT
25912882 GGGGAACCTCTCATCTCTG
131 GGGGAACCTCTCATCTCTG
* * *
25912901 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATAT-TGGTGCCCATGCCATG
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTT-TCATATAT--TGCCAATGCCATA
* *
25912964 TCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGGTGCCAACGCCATATCCCAGACATGGTCT
63 TCCCAGACATGGTCTTACAGGGGACCTCTCATATCGGTGCCAACGCCATATCCCAGACATGGTCT
25913029 TA
128 TA
25913031 CATGGGACCT
Statistics
Matches: 110, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
148 4 0.04
149 40 0.36
150 66 0.60
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.29
Consensus pattern (149 bp):
TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCATATATTGCCAATGCCATATCC
CAGACATGGTCTTACAGGGGACCTCTCATATCGGTGCCAACGCCATATCCCAGACATGGTCTTAT
GGGGAACCTCTCATCTCTG
Found at i:25919815 original size:50 final size:50
Alignment explanation
Indices: 25919690--25919924 Score: 262
Period size: 49 Copynumber: 4.7 Consensus size: 50
25919680 GATAATAACA
* * * * **
25919690 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGAGATGTT-TCCT-GTAC
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATATTGG
* * * * *
25919739 CGCCAATGTCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATTGG
* * ** * *
25919789 TGCCCATGCCATGTCCCAGACATGGTCTT--ATGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAT-GGGAGTTCTCATATTGG
25919838 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATTGG
*
25919888 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA
25919925 CCTCTTTACC
Statistics
Matches: 155, Mismatches: 26, Indels: 9
0.82 0.14 0.05
Matches are distributed among these distances:
48 5 0.03
49 74 0.48
50 74 0.48
51 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.28
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATTGG
Found at i:25924986 original size:18 final size:18
Alignment explanation
Indices: 25924963--25925018 Score: 94
Period size: 18 Copynumber: 3.1 Consensus size: 18
25924953 AAAGTTACAT
25924963 GGGCACGGACACGGGTTG
1 GGGCACGGACACGGGTTG
*
25924981 GGGCACGGACACGGATTG
1 GGGCACGGACACGGGTTG
*
25924999 GGGCACAGACACGGGTTG
1 GGGCACGGACACGGGTTG
25925017 GG
1 GG
25925019 ACATGGCCAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.20, C:0.21, G:0.48, T:0.11
Consensus pattern (18 bp):
GGGCACGGACACGGGTTG
Found at i:25927073 original size:132 final size:132
Alignment explanation
Indices: 25926680--25927077 Score: 724
Period size: 132 Copynumber: 3.0 Consensus size: 132
25926670 AATGGAGAAA
* *
25926680 GTTCTTCGCAGTTCAATAATCGACTGGTAATGGGAGAAAATGGGGTTGATACGGGCTCTTTACCC
1 GTTCTTCGCAGTTCAATAGTCGACTGGTAATGGGAGAAAATGGGGTCGATACGGGCTCTTTACCC
* *
25926745 CTATTAAAATATCAAAAATTGGGCCCATTGCGCAAACCCAACCTTTACAAGTCTTTGTCAAATTA
66 CTATTAAAATATCAAAAATTGGGCCCATTGCCCAAACCCAACCTTTACAAGTCTTTGTCAAATTG
25926810 TG
131 TG
*
25926812 ATTCTTCGCAGTTCAATAGTCGACTGGTAATGGGAGAAAATGGGGTCGATACGGGCTCTTTACCC
1 GTTCTTCGCAGTTCAATAGTCGACTGGTAATGGGAGAAAATGGGGTCGATACGGGCTCTTTACCC
25926877 CTATTAAAATATCAAAAATTGGGCCCATTGCCCAAACCCAACCTTTACAAGTCTTTGTCAAATTG
66 CTATTAAAATATCAAAAATTGGGCCCATTGCCCAAACCCAACCTTTACAAGTCTTTGTCAAATTG
25926942 TG
131 TG
* *
25926944 GTTCTTCGCAGTTCAATAGTCGACTGGTAATGGGAGAAAATGGGGTCAATGCGGGCTCTTTACCC
1 GTTCTTCGCAGTTCAATAGTCGACTGGTAATGGGAGAAAATGGGGTCGATACGGGCTCTTTACCC
*
25927009 CTATTAAAATATCAAAAATTGGGCCCATTGCCCAAACCCAACCTTTACTAGTCTTTGTCAAATTG
66 CTATTAAAATATCAAAAATTGGGCCCATTGCCCAAACCCAACCTTTACAAGTCTTTGTCAAATTG
25927074 TG
131 TG
25927076 GT
1 GT
25927078 CTAATTCTTT
Statistics
Matches: 257, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
132 257 1.00
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.29
Consensus pattern (132 bp):
GTTCTTCGCAGTTCAATAGTCGACTGGTAATGGGAGAAAATGGGGTCGATACGGGCTCTTTACCC
CTATTAAAATATCAAAAATTGGGCCCATTGCCCAAACCCAACCTTTACAAGTCTTTGTCAAATTG
TG
Found at i:25929411 original size:9 final size:9
Alignment explanation
Indices: 25929407--25929482 Score: 98
Period size: 9 Copynumber: 8.4 Consensus size: 9
25929397 AAATTACCCA
25929407 AATTAACCG
1 AATTAACCG
* *
25929416 GATTACCCG
1 AATTAACCG
25929425 AATTAACCG
1 AATTAACCG
* *
25929434 GATTACCCG
1 AATTAACCG
25929443 AATTAACCG
1 AATTAACCG
*
25929452 AATTACCCG
1 AATTAACCG
*
25929461 AATTAACCA
1 AATTAACCG
25929470 AATTAACCG
1 AATTAACCG
25929479 AATT
1 AATT
25929483 GAATCACTAC
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
9 55 1.00
ACGTcount: A:0.39, C:0.25, G:0.12, T:0.24
Consensus pattern (9 bp):
AATTAACCG
Found at i:25929422 original size:18 final size:18
Alignment explanation
Indices: 25929399--25929482 Score: 123
Period size: 18 Copynumber: 4.7 Consensus size: 18
25929389 TTGGTTAAAA
*
25929399 ATTACCCAAATTAACCGG
1 ATTACCCGAATTAACCGG
25929417 ATTACCCGAATTAACCGG
1 ATTACCCGAATTAACCGG
*
25929435 ATTACCCGAATTAACCGA
1 ATTACCCGAATTAACCGG
**
25929453 ATTACCCGAATTAACCAA
1 ATTACCCGAATTAACCGG
*
25929471 ATTAACCGAATT
1 ATTACCCGAATT
25929483 GAATCACTAC
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 62 1.00
ACGTcount: A:0.39, C:0.26, G:0.11, T:0.24
Consensus pattern (18 bp):
ATTACCCGAATTAACCGG
Found at i:25929438 original size:27 final size:27
Alignment explanation
Indices: 25929398--25929482 Score: 98
Period size: 27 Copynumber: 3.1 Consensus size: 27
25929388 TTTGGTTAAA
* * * *
25929398 AATTACCCAAATTAACCGGATTACCCG
1 AATTAACCGAATTAACCGAATTAACCG
* *
25929425 AATTAACCGGATTACCCGAATTAACCG
1 AATTAACCGAATTAACCGAATTAACCG
* *
25929452 AATTACCCGAATTAACCAAATTAACCG
1 AATTAACCGAATTAACCGAATTAACCG
25929479 AATT
1 AATT
25929483 GAATCACTAC
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.40, C:0.26, G:0.11, T:0.24
Consensus pattern (27 bp):
AATTAACCGAATTAACCGAATTAACCG
Found at i:25939891 original size:27 final size:27
Alignment explanation
Indices: 25939858--25939911 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
25939848 AAATTGTTTC
*
25939858 TTGTTCTATTTTTAATTCATGATTGTT
1 TTGTTCTATGTTTAATTCATGATTGTT
* *
25939885 TTGTTCTGTGTTTGATTCATGATTGTT
1 TTGTTCTATGTTTAATTCATGATTGTT
25939912 CAAGCAATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.15, C:0.07, G:0.17, T:0.61
Consensus pattern (27 bp):
TTGTTCTATGTTTAATTCATGATTGTT
Found at i:25954273 original size:27 final size:27
Alignment explanation
Indices: 25954238--25954310 Score: 128
Period size: 27 Copynumber: 2.7 Consensus size: 27
25954228 TACAGAATAT
*
25954238 GCCACAAAGGCTATTCATTCATAGTAC
1 GCCACAAAGGCTATTCATTCAGAGTAC
*
25954265 GCCATAAAGGCTATTCATTCAGAGTAC
1 GCCACAAAGGCTATTCATTCAGAGTAC
25954292 GCCACAAAGGCTATTCATT
1 GCCACAAAGGCTATTCATT
25954311 ACTATCGTGT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (27 bp):
GCCACAAAGGCTATTCATTCAGAGTAC
Found at i:25956736 original size:12 final size:12
Alignment explanation
Indices: 25956698--25956739 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
25956688 ATTGGTCATA
25956698 GAGAGATTTGAG
1 GAGAGATTTGAG
25956710 GAGGGAGATTT--G
1 GA--GAGATTTGAG
25956722 GAGAGATTTGAG
1 GAGAGATTTGAG
25956734 GAGAGA
1 GAGAGA
25956740 ATATTGGGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
10 7 0.27
12 12 0.46
14 7 0.27
ACGTcount: A:0.33, C:0.00, G:0.45, T:0.21
Consensus pattern (12 bp):
GAGAGATTTGAG
Found at i:25957384 original size:27 final size:27
Alignment explanation
Indices: 25957354--25957611 Score: 286
Period size: 27 Copynumber: 9.6 Consensus size: 27
25957344 TTACACTATT
* *
25957354 ATGACTGAAATACCCCCACAGGGTAGA
1 ATGACCGAAATACCCCCATAGGGTAGA
* * *
25957381 ATGACCGAAGTACCCCCATAAGGTAAA
1 ATGACCGAAATACCCCCATAGGGTAGA
* * *
25957408 ATGACCAAAATACCCTCATAGGATAGA
1 ATGACCGAAATACCCCCATAGGGTAGA
* * * *
25957435 ATGACCGAAACAGCCTCATAAGGTAGA
1 ATGACCGAAATACCCCCATAGGGTAGA
** *
25957462 ATGACCGAAATACTTCCATAGGATAGA
1 ATGACCGAAATACCCCCATAGGGTAGA
* *
25957489 ATGACTGAAATA-CCCGATAGGGTAGA
1 ATGACCGAAATACCCCCATAGGGTAGA
* *
25957515 ATGACCGAAATACCCCTATAAGGTAGA
1 ATGACCGAAATACCCCCATAGGGTAGA
* * *
25957542 ATAACCAAAATACCCCCATAAGGTAGA
1 ATGACCGAAATACCCCCATAGGGTAGA
25957569 ATGACCGAAATACCCCCATAGGGTA-A
1 ATGACCGAAATACCCCCATAGGGTAGA
*
25957595 AGTGACCAAAATACCCC
1 A-TGACCGAAATACCCC
25957612 TGTAGGATAA
Statistics
Matches: 191, Mismatches: 38, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
26 23 0.12
27 168 0.88
ACGTcount: A:0.41, C:0.24, G:0.19, T:0.17
Consensus pattern (27 bp):
ATGACCGAAATACCCCCATAGGGTAGA
Found at i:25957618 original size:134 final size:135
Alignment explanation
Indices: 25957354--25957626 Score: 356
Period size: 134 Copynumber: 2.0 Consensus size: 135
25957344 TTACACTATT
* *
25957354 ATGACTGAAATACCCCCACAGGGTAGAATGACCGAAGTACCCCCATAAGGTAAAATGACCAAAAT
1 ATGACTGAAATACCCCCACAGGGTAGAATGACCGAAATACCCCCATAAGGTAAAATAACCAAAAT
* * * * *
25957419 ACCCTCATAGGATAGAATGACCGAAACAGCCTCATAAGGTAGAATGACCGAAATACTTCCATAGG
66 ACCCCCATAGGATAGAATGACCGAAACACCCCCATAAGGTAGAATGACCAAAATACTCCCATAGG
*
25957484 ATAGA
131 ATAAA
* * * *
25957489 ATGACTGAAATA-CCCGATAGGGTAGAATGACCGAAATACCCCTATAAGGTAGAATAACCAAAAT
1 ATGACTGAAATACCCCCACAGGGTAGAATGACCGAAATACCCCCATAAGGTAAAATAACCAAAAT
* * *
25957553 ACCCCCATAAGG-TAGAATGACCGAAATACCCCCATAGGGTA-AAGTGACCAAAATAC-CCCTGT
66 ACCCCCAT-AGGATAGAATGACCGAAACACCCCCATAAGGTAGAA-TGACCAAAATACTCCC-AT
25957615 AGGATAAA
128 AGGATAAA
25957623 ATGA
1 ATGA
25957627 TTGTTATACC
Statistics
Matches: 120, Mismatches: 15, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
133 4 0.03
134 101 0.84
135 15 0.12
ACGTcount: A:0.41, C:0.22, G:0.19, T:0.17
Consensus pattern (135 bp):
ATGACTGAAATACCCCCACAGGGTAGAATGACCGAAATACCCCCATAAGGTAAAATAACCAAAAT
ACCCCCATAGGATAGAATGACCGAAACACCCCCATAAGGTAGAATGACCAAAATACTCCCATAGG
ATAAA
Found at i:25972645 original size:5 final size:5
Alignment explanation
Indices: 25972635--25972660 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
25972625 AAACATATTA
25972635 AAACC AAACC AAACC AAACC AAACC A
1 AAACC AAACC AAACC AAACC AAACC A
25972661 TTCATATTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.62, C:0.38, G:0.00, T:0.00
Consensus pattern (5 bp):
AAACC
Found at i:25978978 original size:38 final size:39
Alignment explanation
Indices: 25978901--25978987 Score: 113
Period size: 38 Copynumber: 2.3 Consensus size: 39
25978891 TATAATTGCC
* * *
25978901 ATAATTATAATAATGTTTGACCAAAAAATTACAATTACA
1 ATAATTATAATAATATTCGACCAAAAAATTACAACTACA
* * *
25978940 ATAATTATAATAATATTCGATC-ATAAATTATAACTACA
1 ATAATTATAATAATATTCGACCAAAAAATTACAACTACA
25978978 ATAATTATAA
1 ATAATTATAA
25978988 CAAGGATTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
38 23 0.55
39 19 0.45
ACGTcount: A:0.52, C:0.09, G:0.03, T:0.36
Consensus pattern (39 bp):
ATAATTATAATAATATTCGACCAAAAAATTACAACTACA
Found at i:25980288 original size:13 final size:13
Alignment explanation
Indices: 25980270--25980294 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25980260 TAATGGTATA
25980270 TTGAATCCATGAC
1 TTGAATCCATGAC
25980283 TTGAATCCATGA
1 TTGAATCCATGA
25980295 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:25980872 original size:27 final size:27
Alignment explanation
Indices: 25980841--25981018 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
25980831 TAAATTGTAC
25980841 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
25980868 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25980894 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
25980922 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
25980950 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25980977 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
25981004 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
25981019 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:25980955 original size:82 final size:81
Alignment explanation
Indices: 25980842--25980997 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
25980832 AAATTGTACA
* *
25980842 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
25980906 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
25980923 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
25980988 TGCGAGTTGA
65 TGCGAATTGA
25980998 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:25981009 original size:82 final size:81
Alignment explanation
Indices: 25980838--25981018 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
25980828 GATTAAATTG
* *
25980838 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
25980903 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
25980919 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
25980983 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
25981001 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
25981019 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:25981029 original size:27 final size:27
Alignment explanation
Indices: 25980923--25981029 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
25980913 TGACCATGCG
* * * *
25980923 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
25980951 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
25980978 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
25981005 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
25981030 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:25988047 original size:13 final size:13
Alignment explanation
Indices: 25988029--25988053 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25988019 TAATGGTATA
25988029 TTGAATCCATGAC
1 TTGAATCCATGAC
25988042 TTGAATCCATGA
1 TTGAATCCATGA
25988054 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:25988629 original size:27 final size:27
Alignment explanation
Indices: 25988598--25988775 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
25988588 TAAATTGTAC
25988598 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
25988625 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25988651 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
25988679 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
25988707 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25988734 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
25988761 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
25988776 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:25988712 original size:82 final size:81
Alignment explanation
Indices: 25988599--25988754 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
25988589 AAATTGTACA
* *
25988599 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
25988663 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
25988680 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
25988745 TGCGAGTTGA
65 TGCGAATTGA
25988755 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:25988766 original size:82 final size:81
Alignment explanation
Indices: 25988595--25988775 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
25988585 GATTAAATTG
* *
25988595 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
25988660 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
25988676 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
25988740 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
25988758 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
25988776 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:25988786 original size:27 final size:27
Alignment explanation
Indices: 25988680--25988786 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
25988670 TGACCATGCG
* * * *
25988680 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
25988708 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
25988735 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
25988762 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
25988787 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:25991133 original size:27 final size:27
Alignment explanation
Indices: 25991092--25991149 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
25991082 CAAGTCAAAA
*
25991092 ATTG-CTCACCGTGTTGCGACACTAAC
1 ATTGCCTCACCATGTTGCGACACTAAC
25991118 ATTGCCTCACCATGTTGCGACACTAAC
1 ATTGCCTCACCATGTTGCGACACTAAC
25991145 ATTGC
1 ATTGC
25991150 ATGTCATGAT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 4 0.13
27 26 0.87
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.28
Consensus pattern (27 bp):
ATTGCCTCACCATGTTGCGACACTAAC
Found at i:26025367 original size:51 final size:50
Alignment explanation
Indices: 26025305--26025495 Score: 222
Period size: 51 Copynumber: 3.8 Consensus size: 50
26025295 ATGTCTGGTT
* * * *
26025305 CACATACTAGCCTGCACATAGTACTGCACATGTGACCATTACCATCCGATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCA-TACCATCCGGTA
* * * *
26025356 CACATAGTAGCCTGCACATAGTACTACACACGTGATCGAAACTATTCGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGA-CCATACCATCCGGTA
* * * * *
26025407 CGCATAGTAGCCTGCACATTGTACTACACATGCGACC-TATCATTCCGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATACCA-TCCGGTA
*
26025457 CACGTAGTAGCCTGCACATAGTACTACACACGTGACCAT
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCAT
26025496 CACTTTCATG
Statistics
Matches: 115, Mismatches: 22, Indels: 6
0.80 0.15 0.04
Matches are distributed among these distances:
49 2 0.02
50 39 0.34
51 72 0.63
52 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (50 bp):
CACATAGTAGCCTGCACATAGTACTACACACGTGACCATACCATCCGGTA
Found at i:26025478 original size:101 final size:101
Alignment explanation
Indices: 26025307--26025491 Score: 282
Period size: 101 Copynumber: 1.8 Consensus size: 101
26025297 GTCTGGTTCA
* *
26025307 CATACTAGCCTGCACATAGTACTGCACATGTGACCATTACCATCCGATACACATAGTAGCCTGCA
1 CATACTAGCCTGCACATAGTACTACACATGCGACCA-TACCATCCGATACACATAGTAGCCTGCA
26025372 CATAGTACTACACACGTGATCGAAACTATTCGGTACG
65 CATAGTACTACACACGTGATCGAAACTATTCGGTACG
* * * * *
26025409 CATAGTAGCCTGCACATTGTACTACACATGCGACC-TATCATTCCGGTACACGTAGTAGCCTGCA
1 CATACTAGCCTGCACATAGTACTACACATGCGACCATACCA-TCCGATACACATAGTAGCCTGCA
26025473 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
26025492 CCATCACTTT
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
100 4 0.05
101 40 0.53
102 31 0.41
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (101 bp):
CATACTAGCCTGCACATAGTACTACACATGCGACCATACCATCCGATACACATAGTAGCCTGCAC
ATAGTACTACACACGTGATCGAAACTATTCGGTACG
Done.