Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53248092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1300000 characters in sequence are not A, C, G, or T
File 83 of 175
Found at i:26029614 original size:25 final size:24
Alignment explanation
Indices: 26029577--26029658 Score: 94
Period size: 25 Copynumber: 3.3 Consensus size: 24
26029567 GATACACCAT
* *
26029577 AGCTCGTATGAGCTTATTGATTTGT
1 AGCTCGTATGAGCTTACTGATTT-C
*
26029602 AGCTCGTGA-GAGCTTACCGATTCTC
1 AGCTCGT-ATGAGCTTACTGATT-TC
26029627 AGCTCGTATGAGCTTACTGATTTAC
1 AGCTCGTATGAGCTTACTGATTT-C
26029652 AGCTCGT
1 AGCTCGT
26029659 GAAAACATAC
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
24 2 0.04
25 45 0.92
26 2 0.04
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.35
Consensus pattern (24 bp):
AGCTCGTATGAGCTTACTGATTTC
Found at i:26029656 original size:50 final size:50
Alignment explanation
Indices: 26029574--26029689 Score: 153
Period size: 50 Copynumber: 2.3 Consensus size: 50
26029564 GCGGATACAC
* ** * * * *
26029574 CATAGCTCGTATGAGCTTATTGATTTGTAGCTCGTGAGAGCTTACCGATT
1 CATAGCTCGTATGAGCTTACTGATTTACAGCTCGTGAAAACATACCAATT
26029624 C-TCAGCTCGTATGAGCTTACTGATTTACAGCTCGTGAAAACATACCAATT
1 CAT-AGCTCGTATGAGCTTACTGATTTACAGCTCGTGAAAACATACCAATT
26029674 CATAGCTCGTATGAGC
1 CATAGCTCGTATGAGC
26029690 ATACATGTAT
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
49 1 0.02
50 55 0.96
51 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.32
Consensus pattern (50 bp):
CATAGCTCGTATGAGCTTACTGATTTACAGCTCGTGAAAACATACCAATT
Found at i:26031413 original size:13 final size:12
Alignment explanation
Indices: 26031379--26031413 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
26031369 TCAGGCTATT
*
26031379 ACACGGCCTAGC
1 ACACGGCCTGGC
26031391 ACACGGCCTGGC
1 ACACGGCCTGGC
26031403 ACACGGGCCTG
1 ACAC-GGCCTG
26031414 TGAGGTTACT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 15 0.71
13 6 0.29
ACGTcount: A:0.20, C:0.40, G:0.31, T:0.09
Consensus pattern (12 bp):
ACACGGCCTGGC
Found at i:26033815 original size:27 final size:27
Alignment explanation
Indices: 26033785--26033851 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 27
26033775 ACAACCCATT
* *
26033785 TTTATTGTCCCAAC-GAACTACCCTGTG
1 TTTAATGTCCCAACAG-ACTACCCTGTA
* * *
26033812 TTTACTGTCCCAGCAGATTACCCTGTA
1 TTTAATGTCCCAACAGACTACCCTGTA
26033839 TTTAATGTCCCAA
1 TTTAATGTCCCAA
26033852 TGGACTCTCT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.24, C:0.28, G:0.13, T:0.34
Consensus pattern (27 bp):
TTTAATGTCCCAACAGACTACCCTGTA
Found at i:26038318 original size:43 final size:43
Alignment explanation
Indices: 26038257--26038414 Score: 235
Period size: 43 Copynumber: 3.7 Consensus size: 43
26038247 TGCCCCAGAC
* ** *
26038257 ATGGTCTTACATGGAAATCTCGTATCGATGCCAATAGCCCAACT
1 ATGGTCTTACA-CGAAATCTCAAATCGATGCCAATAGCCCAGCT
*
26038301 ATGGTCTTACACGAAATCTCAAATCGATGTCAATAGCCCAGCT
1 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCT
* * *
26038344 ATGGTCTTACACGAAATCTCAAATCGGTGCTAATAGCTCAGCT
1 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCT
26038387 ATGGTCTTACACGAAATCTCAAATCGAT
1 ATGGTCTTACACGAAATCTCAAATCGAT
26038415 ATTGGAACAT
Statistics
Matches: 104, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
43 93 0.89
44 11 0.11
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (43 bp):
ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCT
Found at i:26040546 original size:7 final size:6
Alignment explanation
Indices: 26040500--26040545 Score: 51
Period size: 6 Copynumber: 7.7 Consensus size: 6
26040490 AATTTAATTT
*
26040500 TTTTAA TTTCATA TTTCTAA TTTTAA TTTTAA TTTT-- TTTTAA TTTT
1 TTTTAA TTTTA-A TTT-TAA TTTTAA TTTTAA TTTTAA TTTTAA TTTT
26040546 TTTATTTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
4 4 0.12
6 21 0.62
7 8 0.24
8 1 0.03
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (6 bp):
TTTTAA
Found at i:26040556 original size:16 final size:16
Alignment explanation
Indices: 26040492--26040545 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
26040482 TTTTGATAAA
26040492 TTTAA-TTTTTTTAAT
1 TTTAATTTTTTTTAAT
*
26040507 TTCATATTTCTAATTTTAAT
1 TTTA-ATTT-T--TTTTAAT
26040527 TTTAATTTTTTTTAAT
1 TTTAATTTTTTTTAAT
26040543 TTT
1 TTT
26040546 TTTATTTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
15 3 0.09
16 11 0.34
17 2 0.06
18 2 0.06
19 4 0.12
20 10 0.31
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTAATTTTTTTTAAT
Found at i:26040561 original size:18 final size:18
Alignment explanation
Indices: 26040526--26040568 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
26040516 CTAATTTTAA
* **
26040526 TTTTAATTTTTTTTAATT
1 TTTTTATTTTTTAGAATT
26040544 TTTTTATTTTTTAGAATT
1 TTTTTATTTTTTAGAATT
*
26040562 ATTTTAT
1 TTTTTAT
26040569 ACAAATAATG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (18 bp):
TTTTTATTTTTTAGAATT
Found at i:26045571 original size:93 final size:93
Alignment explanation
Indices: 26045474--26045659 Score: 363
Period size: 93 Copynumber: 2.0 Consensus size: 93
26045464 AAAACATACA
*
26045474 AAACCTAACCATAACCCTACTTTAACAAAAATCTAAACCTTAACCCTAAAATAAAATAACCCTAG
1 AAACCTAACCATAACCCTACTTTAACAAAAATCTAAACCCTAACCCTAAAATAAAATAACCCTAG
26045539 TAAAAAGAAAACGCTTCCAACCAAAAGC
66 TAAAAAGAAAACGCTTCCAACCAAAAGC
26045567 AAACCTAACCATAACCCTACTTTAACAAAAATCTAAACCCTAACCCTAAAATAAAATAACCCTAG
1 AAACCTAACCATAACCCTACTTTAACAAAAATCTAAACCCTAACCCTAAAATAAAATAACCCTAG
26045632 TAAAAAGAAAACGCTTCCAACCAAAAGC
66 TAAAAAGAAAACGCTTCCAACCAAAAGC
26045660 GTTTTCAATG
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 92 1.00
ACGTcount: A:0.51, C:0.27, G:0.04, T:0.18
Consensus pattern (93 bp):
AAACCTAACCATAACCCTACTTTAACAAAAATCTAAACCCTAACCCTAAAATAAAATAACCCTAG
TAAAAAGAAAACGCTTCCAACCAAAAGC
Found at i:26055421 original size:31 final size:31
Alignment explanation
Indices: 26055383--26055491 Score: 116
Period size: 31 Copynumber: 3.5 Consensus size: 31
26055373 AATATAAGCC
26055383 TATTTTTTATAAATAATTATATCACTTAATT
1 TATTTTTTATAAATAATTATATCACTTAATT
* * * * *
26055414 TA-TTTTT-TAAATACTTGAAAATAAATATAAGTC
1 TATTTTTTATAAATAATT--ATATCACT-TAA-TT
26055447 TATTTTTTATAAATAATTATATCACTTAATT
1 TATTTTTTATAAATAATTATATCACTTAATT
26055478 TATTTTTTA-AAATA
1 TATTTTTTATAAATA
26055492 TAAAATACTT
Statistics
Matches: 62, Mismatches: 10, Indels: 13
0.73 0.12 0.15
Matches are distributed among these distances:
29 8 0.13
30 10 0.16
31 17 0.27
32 6 0.10
33 8 0.13
34 5 0.08
35 8 0.13
ACGTcount: A:0.41, C:0.06, G:0.02, T:0.51
Consensus pattern (31 bp):
TATTTTTTATAAATAATTATATCACTTAATT
Found at i:26055424 original size:64 final size:64
Alignment explanation
Indices: 26055351--26055488 Score: 267
Period size: 64 Copynumber: 2.2 Consensus size: 64
26055341 AACACTTTGA
26055351 ATTTTTTAAATACTTGAAAATAAATATAAGCCTATTTTTTATAAATAATTATATCACTTAATTT
1 ATTTTTTAAATACTTGAAAATAAATATAAGCCTATTTTTTATAAATAATTATATCACTTAATTT
*
26055415 ATTTTTTAAATACTTGAAAATAAATATAAGTCTATTTTTTATAAATAATTATATCACTTAATTT
1 ATTTTTTAAATACTTGAAAATAAATATAAGCCTATTTTTTATAAATAATTATATCACTTAATTT
26055479 ATTTTTTAAA
1 ATTTTTTAAA
26055489 ATATAAAATA
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
64 73 1.00
ACGTcount: A:0.42, C:0.07, G:0.03, T:0.49
Consensus pattern (64 bp):
ATTTTTTAAATACTTGAAAATAAATATAAGCCTATTTTTTATAAATAATTATATCACTTAATTT
Found at i:26055425 original size:29 final size:30
Alignment explanation
Indices: 26055386--26055488 Score: 102
Period size: 29 Copynumber: 3.3 Consensus size: 30
26055376 ATAAGCCTAT
26055386 TTTTTATAAATAATTATATCACTTAATTTA
1 TTTTTATAAATAATTATATCACTTAATTTA
* * * * *
26055416 TTTTT-TAAATACTTGAAAATAAATATAAGTCTA
1 TTTTTATAAATAATT--ATATCACT-TAA-TTTA
26055449 TTTTTTATAAATAATTATATCACTTAATTTA
1 -TTTTTATAAATAATTATATCACTTAATTTA
26055480 TTTTT-TAAA
1 TTTTTATAAA
26055489 ATATAAAATA
Statistics
Matches: 57, Mismatches: 10, Indels: 13
0.71 0.12 0.16
Matches are distributed among these distances:
29 12 0.21
30 10 0.18
31 8 0.14
32 6 0.11
33 8 0.14
34 5 0.09
35 8 0.14
ACGTcount: A:0.41, C:0.06, G:0.02, T:0.51
Consensus pattern (30 bp):
TTTTTATAAATAATTATATCACTTAATTTA
Found at i:26055453 original size:33 final size:33
Alignment explanation
Indices: 26055351--26055455 Score: 110
Period size: 33 Copynumber: 3.2 Consensus size: 33
26055341 AACACTTTGA
*
26055351 ATTTTTTAAATACTTGAAAATAAATATAAGCCT
1 ATTTTTTAAATACTTGAAAATAAATATAAGTCT
* * * * *
26055384 ATTTTTTATAAATAATT--ATATCACT-TAA-TTT
1 A-TTTTT-TAAATACTTGAAAATAAATATAAGTCT
26055415 ATTTTTTAAATACTTGAAAATAAATATAAGTCT
1 ATTTTTTAAATACTTGAAAATAAATATAAGTCT
26055448 ATTTTTTA
1 ATTTTTTA
26055456 TAAATAATTA
Statistics
Matches: 55, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
29 8 0.15
30 5 0.09
31 7 0.13
32 6 0.11
33 16 0.29
34 5 0.09
35 8 0.15
ACGTcount: A:0.42, C:0.07, G:0.04, T:0.48
Consensus pattern (33 bp):
ATTTTTTAAATACTTGAAAATAAATATAAGTCT
Found at i:26057993 original size:200 final size:199
Alignment explanation
Indices: 26057645--26058052 Score: 719
Period size: 200 Copynumber: 2.0 Consensus size: 199
26057635 TAGTAAGGAA
26057645 TAAATTGTAAAACATGCAAAGTTAAAAAATTAACAATTAAATAACAAATGGTGGTTGGTTAACAT
1 TAAA-TGTAAAACATGCAAAGTTAAAAAATTAACAATTAAATAACAAATGGTGGTTGGTTAACAT
* *
26057710 TGATGTGGGTCACTGAATTGCCATAATTTGATATGAAAAAATAGGTTTTCCCGATATACTTAAGG
65 TGATATGGGTCACTGAATTGCCATAATTTGATATGAAAAAATAGGCTTTCCCGATATACTTAAGG
*
26057775 AGCTTATTCTCAAGCAAAGTAGCATTTTTTTCATAGTTTTTAATAATTTTTAGCTTTTAAGTTAA
130 AGCTTATTCTCAAGCAAAGTAGCATTTTTTTCATAGTTTTTAATAA-TTTTAGATTTTAAGTTAA
26057840 TAAGTG
194 TAAGTG
* *
26057846 TAAATGTAAAACATGCGAAGTTACAAAATTAACAATTAAATAACAAATGGTGGTTGGTTAACATT
1 TAAATGTAAAACATGCAAAGTTAAAAAATTAACAATTAAATAACAAATGGTGGTTGGTTAACATT
* *
26057911 GATATGGGTCACTGAATTGCCATAATTTGATATGAAAAATTAGGCTTTCCCTG-TATACTTAAGT
66 GATATGGGTCACTGAATTGCCATAATTTGATATGAAAAAATAGGCTTTCCC-GATATACTTAAGG
26057975 AGCTTATTCTCAAGCAAAGTAGCATTTTTTTCATAGTTTTTAATAATTTTAGATTTTAAGTTAAT
130 AGCTTATTCTCAAGCAAAGTAGCATTTTTTTCATAGTTTTTAATAATTTTAGATTTTAAGTTAAT
26058040 AAGTG
195 AAGTG
26058045 TAAATGTA
1 TAAATGTA
26058053 TTGTTTTTAC
Statistics
Matches: 199, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
199 31 0.16
200 163 0.82
201 5 0.03
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (199 bp):
TAAATGTAAAACATGCAAAGTTAAAAAATTAACAATTAAATAACAAATGGTGGTTGGTTAACATT
GATATGGGTCACTGAATTGCCATAATTTGATATGAAAAAATAGGCTTTCCCGATATACTTAAGGA
GCTTATTCTCAAGCAAAGTAGCATTTTTTTCATAGTTTTTAATAATTTTAGATTTTAAGTTAATA
AGTG
Found at i:26059998 original size:28 final size:28
Alignment explanation
Indices: 26059959--26060074 Score: 119
Period size: 28 Copynumber: 4.2 Consensus size: 28
26059949 ACACGACATT
*
26059959 AAAA-AATAGCCTTTGTGGCGAACTATG
1 AAAAGAATAGCCTTTGTGGCGAACTCTG
* *
26059986 AAAAGAATAGCCTTTGTGGTGAACTCTA
1 AAAAGAATAGCCTTTGTGGCGAACTCTG
* * * *
26060014 AAAAGAATA-ACTTGTATGGTGAACTCTT
1 AAAAGAATAGCCTT-TGTGGCGAACTCTG
* * *
26060042 AAAAAAATAGCCTTTGTGGCAAACTTTG
1 AAAAGAATAGCCTTTGTGGCGAACTCTG
26060070 AAAAG
1 AAAAG
26060075 GGATGCCTCT
Statistics
Matches: 72, Mismatches: 14, Indels: 5
0.79 0.15 0.05
Matches are distributed among these distances:
27 7 0.10
28 62 0.86
29 3 0.04
ACGTcount: A:0.40, C:0.13, G:0.20, T:0.28
Consensus pattern (28 bp):
AAAAGAATAGCCTTTGTGGCGAACTCTG
Found at i:26061990 original size:45 final size:46
Alignment explanation
Indices: 26061941--26062058 Score: 132
Period size: 47 Copynumber: 2.6 Consensus size: 46
26061931 AATCTACATT
** * * *
26061941 TTTTGGTGG-TTTATCCACATATGTGTTTTAGTAGCTTGTCTACGA
1 TTTTGGTGGCTTTATCCACATATGTGTACTAGCAGCTAGTCTACAA
*
26061986 TTTTGGTGGCTTCA-CCACAATTATGTGTACTAGCAGCTAGTCTACAA
1 TTTTGGTGGCTTTATCCAC-A-TATGTGTACTAGCAGCTAGTCTACAA
* *
26062033 ATTTGGTGGCTTTGTCCACATATGTG
1 TTTTGGTGGCTTTATCCACATATGTG
26062059 CAGGTGTGTT
Statistics
Matches: 60, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
45 13 0.22
46 10 0.17
47 33 0.55
48 4 0.07
ACGTcount: A:0.20, C:0.17, G:0.22, T:0.41
Consensus pattern (46 bp):
TTTTGGTGGCTTTATCCACATATGTGTACTAGCAGCTAGTCTACAA
Found at i:26064069 original size:21 final size:22
Alignment explanation
Indices: 26064039--26064080 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
26064029 TTCGTGTAAC
*
26064039 TTGAATTATAT-TATTAGATTA
1 TTGAAATATATATATTAGATTA
*
26064060 TTGAAATATATATATTGGATT
1 TTGAAATATATATATTAGATT
26064081 GAGAAATTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (22 bp):
TTGAAATATATATATTAGATTA
Found at i:26084484 original size:44 final size:44
Alignment explanation
Indices: 26084427--26084512 Score: 129
Period size: 44 Copynumber: 2.0 Consensus size: 44
26084417 AATTAATTAT
26084427 TGAATTACATTAATTTGATACTTAAAAATTAAACACATTATAAG
1 TGAATTACATTAATTTGATACTTAAAAATTAAACACATTATAAG
** *
26084471 TGAATTA-ATTTAATTTGATGGTTAAACATTAAACACATTATA
1 TGAATTACA-TTAATTTGATACTTAAAAATTAAACACATTATA
26084513 TGTACAAACT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
43 1 0.03
44 37 0.97
ACGTcount: A:0.45, C:0.08, G:0.08, T:0.38
Consensus pattern (44 bp):
TGAATTACATTAATTTGATACTTAAAAATTAAACACATTATAAG
Found at i:26084638 original size:16 final size:17
Alignment explanation
Indices: 26084604--26084638 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
26084594 ATATTTTACC
26084604 AAATTTATTAATATAAA
1 AAATTTATTAATATAAA
26084621 AAATTATATTAAT-TAAA
1 AAATT-TATTAATATAAA
26084638 A
1 A
26084639 CCTTAAACCC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
AAATTTATTAATATAAA
Found at i:26084838 original size:75 final size:75
Alignment explanation
Indices: 26084713--26084853 Score: 219
Period size: 75 Copynumber: 1.9 Consensus size: 75
26084703 ATTAATATTA
**
26084713 TTTTGGAAAGAATATAATTCCTTTTTCTAACTTTCCATTTACCTTATCTATTAATAAGGGAATAA
1 TTTTGGAAAGAATATAATTAATTTTTCTAACTTTCCATTTACCTTATCTATTAATAAGGGAATAA
26084778 TCCTATATCC
66 TCCTATATCC
* * ** *
26084788 TTTTGGAATGAATGTAATTAATTTTTCTAACTTTCCATTTGTCTTCTCTATTAATAAGGGAATAA
1 TTTTGGAAAGAATATAATTAATTTTTCTAACTTTCCATTTACCTTATCTATTAATAAGGGAATAA
26084853 T
66 T
26084854 TCTGGTTTTT
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
75 59 1.00
ACGTcount: A:0.31, C:0.14, G:0.10, T:0.45
Consensus pattern (75 bp):
TTTTGGAAAGAATATAATTAATTTTTCTAACTTTCCATTTACCTTATCTATTAATAAGGGAATAA
TCCTATATCC
Found at i:26085274 original size:12 final size:12
Alignment explanation
Indices: 26085257--26085286 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
26085247 GGACATAGGG
26085257 TCGTGTCCGAGC
1 TCGTGTCCGAGC
*
26085269 TCGTGTCCGTGC
1 TCGTGTCCGAGC
26085281 TCGTGT
1 TCGTGT
26085287 AACTCACTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.03, C:0.30, G:0.33, T:0.33
Consensus pattern (12 bp):
TCGTGTCCGAGC
Found at i:26086031 original size:20 final size:20
Alignment explanation
Indices: 26086003--26086041 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
26085993 AACATTCAAA
*
26086003 ATACTATAATCACAA-CCAAG
1 ATACCATAA-CACAAGCCAAG
26086023 ATACCATAACACAAGCCAA
1 ATACCATAACACAAGCCAA
26086042 ACCATGTGGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.51, C:0.28, G:0.05, T:0.15
Consensus pattern (20 bp):
ATACCATAACACAAGCCAAG
Found at i:26087151 original size:25 final size:25
Alignment explanation
Indices: 26087117--26087188 Score: 117
Period size: 25 Copynumber: 2.9 Consensus size: 25
26087107 TCATGTACAT
26087117 GTATGCTCACACGAGCTGTGAATCG
1 GTATGCTCACACGAGCTGTGAATCG
*
26087142 GTATGCTCACACGAGCTGTAAATCG
1 GTATGCTCACACGAGCTGTGAATCG
* *
26087167 GTATGCTCTCACGAGCTATGAA
1 GTATGCTCACACGAGCTGTGAA
26087189 ATTGGGCTTG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (25 bp):
GTATGCTCACACGAGCTGTGAATCG
Found at i:26090034 original size:47 final size:47
Alignment explanation
Indices: 26089982--26090389 Score: 663
Period size: 47 Copynumber: 8.6 Consensus size: 47
26089972 GATAATTGTG
* * *
26089982 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
26090029 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
26090076 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26090125 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26090172 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26090221 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
26090268 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * *
26090317 ATGTGAAAGTGTATATATGTGATGAGGCCAAATGCCCGATGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
26090364 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
26090390 TCCCGAAGGG
Statistics
Matches: 340, Mismatches: 15, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
47 202 0.59
49 138 0.41
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:26090089 original size:96 final size:96
Alignment explanation
Indices: 26089982--26090389 Score: 716
Period size: 96 Copynumber: 4.3 Consensus size: 96
26089972 GATAATTGTG
*
26089982 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
26090045 ATGTGATAAGGCCGAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
26090076 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
26090141 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
26090172 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
26090237 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
26090268 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * *
26090333 ATGTGATGAGGCCAAATGCCCGATGTGATGG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
26090364 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
26090390 TCCCGAAGGG
Statistics
Matches: 303, Mismatches: 9, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
94 15 0.05
95 3 0.01
96 285 0.94
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:26095971 original size:19 final size:19
Alignment explanation
Indices: 26095947--26095986 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
26095937 AGTAGCCGCT
26095947 TAGACTCTATAGTGTACGC
1 TAGACTCTATAGTGTACGC
*
26095966 TAGACTCTTTAGTGTACGC
1 TAGACTCTATAGTGTACGC
26095985 TA
1 TA
26095987 TCTATCACTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (19 bp):
TAGACTCTATAGTGTACGC
Found at i:26098383 original size:16 final size:18
Alignment explanation
Indices: 26098352--26098386 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
26098342 TATATATCTT
26098352 TATATCTTATTATATATA
1 TATATCTTATTATATATA
26098370 TATATCTTATTATATAT
1 TATATCTTATTATATAT
26098387 GTGTATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (18 bp):
TATATCTTATTATATATA
Found at i:26098457 original size:36 final size:36
Alignment explanation
Indices: 26098417--26098518 Score: 111
Period size: 36 Copynumber: 2.8 Consensus size: 36
26098407 CTTCATAAAC
*
26098417 ATTTTTTAGCTTATATATATACATACATACATACAT
1 ATTTTTTAACTTATATATATACATACATACATACAT
* *
26098453 ATTTTTATATACTT-TATA-ATTC-TAACATACGTACAT
1 ATTTTT-TA-ACTTATATATATACAT-ACATACATACAT
* *
26098489 ATTTTTTAACTTATTTATATATATACATAC
1 ATTTTTTAACTTATATATATACATACATAC
26098519 TTATGTATTA
Statistics
Matches: 54, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
34 4 0.07
35 6 0.11
36 34 0.63
37 7 0.13
38 3 0.06
ACGTcount: A:0.37, C:0.13, G:0.02, T:0.48
Consensus pattern (36 bp):
ATTTTTTAACTTATATATATACATACATACATACAT
Found at i:26106421 original size:15 final size:15
Alignment explanation
Indices: 26106401--26106432 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
26106391 TATACAAGAA
26106401 AAATATAAAAGACAT
1 AAATATAAAAGACAT
*
26106416 AAATATAAAATACAT
1 AAATATAAAAGACAT
26106431 AA
1 AA
26106433 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.06, G:0.03, T:0.22
Consensus pattern (15 bp):
AAATATAAAAGACAT
Found at i:26113376 original size:12 final size:12
Alignment explanation
Indices: 26113356--26113414 Score: 93
Period size: 12 Copynumber: 5.0 Consensus size: 12
26113346 TAGTAGTTTC
26113356 TTCAAAAAAAAA
1 TTCAAAAAAAAA
*
26113368 TT-GAAAAAAAA
1 TTCAAAAAAAAA
*
26113379 TTCGAAAAAAAA
1 TTCAAAAAAAAA
26113391 TTCAAAAAAAAA
1 TTCAAAAAAAAA
26113403 TTCAAAAAAAAA
1 TTCAAAAAAAAA
26113415 GGTTTCCTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
11 10 0.23
12 34 0.77
ACGTcount: A:0.73, C:0.07, G:0.03, T:0.17
Consensus pattern (12 bp):
TTCAAAAAAAAA
Found at i:26113473 original size:15 final size:16
Alignment explanation
Indices: 26113453--26113489 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
26113443 TATCAAGTTG
26113453 AAAAAAAA-TTCGTGA
1 AAAAAAAATTTCGTGA
26113468 AAAAAAAATTTCGTGA
1 AAAAAAAATTTCGTGA
26113484 AAAAAA
1 AAAAAA
26113490 GAAGAAGCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.65, C:0.05, G:0.11, T:0.19
Consensus pattern (16 bp):
AAAAAAAATTTCGTGA
Found at i:26120198 original size:40 final size:40
Alignment explanation
Indices: 26119959--26120184 Score: 289
Period size: 40 Copynumber: 5.7 Consensus size: 40
26119949 TTGAATGATG
* * * *
26119959 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAA
* *
26119999 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26120039 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
26120079 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26120119 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
26120160 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26120185 AACGAGTAGC
Statistics
Matches: 169, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 1 0.01
40 158 0.93
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26123239 original size:47 final size:47
Alignment explanation
Indices: 26123165--26123279 Score: 167
Period size: 47 Copynumber: 2.4 Consensus size: 47
26123155 CCAGCACATA
** *
26123165 TGTGGACAAGCCACCAATTTTGCAGACAAGCTGCCAATACGCATAGT
1 TGTGGACAAGCCACCAAAATTGCAGACAAGCTGCCAATACACATAGT
* * *
26123212 TGTGGACAAGCCACTAAAATTGTAGACAAGCTGCCAATGCACATAGT
1 TGTGGACAAGCCACCAAAATTGCAGACAAGCTGCCAATACACATAGT
*
26123259 TGTGGTCAAGCCACCAAAATT
1 TGTGGACAAGCCACCAAAATT
26123280 TGCATATTAT
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 60 1.00
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.22
Consensus pattern (47 bp):
TGTGGACAAGCCACCAAAATTGCAGACAAGCTGCCAATACACATAGT
Found at i:26123471 original size:15 final size:15
Alignment explanation
Indices: 26123451--26123485 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
26123441 AACAAATAGC
26123451 CATGATAGTACACAA
1 CATGATAGTACACAA
*
26123466 CATGATATTACACAA
1 CATGATAGTACACAA
26123481 CATGA
1 CATGA
26123486 GATTAGAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.46, C:0.20, G:0.11, T:0.23
Consensus pattern (15 bp):
CATGATAGTACACAA
Found at i:26123490 original size:15 final size:15
Alignment explanation
Indices: 26123459--26123490 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
26123449 GCCATGATAG
*
26123459 TACACAACATGATAT
1 TACACAACATGAGAT
26123474 TACACAACATGAGAT
1 TACACAACATGAGAT
26123489 TA
1 TA
26123491 GAAAAATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.19, G:0.09, T:0.25
Consensus pattern (15 bp):
TACACAACATGAGAT
Found at i:26134773 original size:19 final size:19
Alignment explanation
Indices: 26134751--26134788 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
26134741 TCAATCATCC
26134751 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
26134770 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
26134789 ACTCTTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:26148563 original size:19 final size:19
Alignment explanation
Indices: 26148541--26148578 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
26148531 TCAATCATCC
26148541 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
26148560 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
26148579 ACTCTTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:26157412 original size:67 final size:67
Alignment explanation
Indices: 26157272--26157402 Score: 173
Period size: 66 Copynumber: 2.0 Consensus size: 67
26157262 GTTCAACTAT
* *
26157272 TATTAAAGTTAATCACTTTAATATTAAATTAATATAATATTTATCTACAAGATAAATATTAAATT
1 TATT-AAGATAATCACTTTAATATTAAATTAATAAAATATTTATCTACAAGATAAATATTAAATT
*
26157337 TAA
65 AAA
* *
26157340 TATTAAGATAATCAC-TTAATATTAAATTAATAAAATA-TTAT-T--TAGATAAGTATTAAATTA
1 TATTAAGATAATCACTTTAATATTAAATTAATAAAATATTTATCTACAAGATAAATATTAAATTA
26157400 AA
66 AA
26157402 T
1 T
26157403 TAAATATTAA
Statistics
Matches: 58, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
62 18 0.31
64 1 0.02
65 4 0.07
66 21 0.36
67 10 0.17
68 4 0.07
ACGTcount: A:0.50, C:0.05, G:0.04, T:0.42
Consensus pattern (67 bp):
TATTAAGATAATCACTTTAATATTAAATTAATAAAATATTTATCTACAAGATAAATATTAAATTA
AA
Found at i:26157816 original size:20 final size:20
Alignment explanation
Indices: 26157791--26157828 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26157781 TCTGACTTGA
26157791 CAATTA-ATTTTCCCAAAAAT
1 CAATTAGATTTT-CCAAAAAT
26157811 CAATTAGATTTTCCAAAA
1 CAATTAGATTTTCCAAAA
26157829 GTAATTTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.45, C:0.18, G:0.03, T:0.34
Consensus pattern (20 bp):
CAATTAGATTTTCCAAAAAT
Found at i:26161850 original size:12 final size:13
Alignment explanation
Indices: 26161819--26161850 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
26161809 GATAATTCCA
26161819 ACAAAAAATTATG
1 ACAAAAAATTATG
26161832 ACAAAAAATTATG
1 ACAAAAAATTATG
26161845 ACAAAA
1 ACAAAA
26161851 CATCAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.66, C:0.09, G:0.06, T:0.19
Consensus pattern (13 bp):
ACAAAAAATTATG
Found at i:26164831 original size:26 final size:26
Alignment explanation
Indices: 26164802--26164874 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
26164792 AATATCGCAG
* *
26164802 CAAAACTGCCAGTAATAGTATCACAA
1 CAAAGCTGCCAGTAACAGTATCACAA
* *
26164828 CAAAGTTGCCAGTAACAGTATCGCAA
1 CAAAGCTGCCAGTAACAGTATCACAA
*
26164854 CAAAGCTGCTAGTAACAGTAT
1 CAAAGCTGCCAGTAACAGTAT
26164875 ACTTCCTCCA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.41, C:0.22, G:0.16, T:0.21
Consensus pattern (26 bp):
CAAAGCTGCCAGTAACAGTATCACAA
Found at i:26169186 original size:25 final size:25
Alignment explanation
Indices: 26169138--26169186 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
26169128 CATAATTGAA
* * *
26169138 ATGAAATGGATTGATTTTGTATATT
1 ATGAAATAGATTGATTGTGAATATT
*
26169163 ATGAAATATATTGATTGTGAATAT
1 ATGAAATAGATTGATTGTGAATAT
26169187 ATGTGTATCG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.18, T:0.45
Consensus pattern (25 bp):
ATGAAATAGATTGATTGTGAATATT
Found at i:26173880 original size:22 final size:21
Alignment explanation
Indices: 26173855--26173900 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
26173845 GCACAAAACT
*
26173855 GAACAACCATGCCATGTGAAAA
1 GAACAACCA-GCAATGTGAAAA
**
26173877 GAACCTCCAGCAATGTGAAAA
1 GAACAACCAGCAATGTGAAAA
26173898 GAA
1 GAA
26173901 TTAAACAGCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.46, C:0.22, G:0.20, T:0.13
Consensus pattern (21 bp):
GAACAACCAGCAATGTGAAAA
Found at i:26176296 original size:30 final size:30
Alignment explanation
Indices: 26176233--26176297 Score: 94
Period size: 30 Copynumber: 2.2 Consensus size: 30
26176223 GTCTCAGCCA
* * *
26176233 TGTGAGGCACACGGCTTGGCCATACGGGCG
1 TGTGAGGCACACGGCCTGGCCACACAGGCG
*
26176263 TGTGAGGCACACGGCCTGGCCACACAGGTG
1 TGTGAGGCACACGGCCTGGCCACACAGGCG
26176293 TGTGA
1 TGTGA
26176298 CCCCTGAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.18, C:0.26, G:0.38, T:0.17
Consensus pattern (30 bp):
TGTGAGGCACACGGCCTGGCCACACAGGCG
Found at i:26176643 original size:50 final size:49
Alignment explanation
Indices: 26176585--26176679 Score: 136
Period size: 50 Copynumber: 1.9 Consensus size: 49
26176575 TCAAGAAAGG
* *
26176585 ATAAATAGTGATAAGAGTGGAGACAATGGAAGACTAAGTTCTAGCAATGT
1 ATAAATAGTGATAAGAGTGGAGACAATGAAAGACCAAGTT-TAGCAATGT
* * *
26176635 ATAAATAGTGATAAGAGTGTAGATAGTGAAAGACCAAGTTTAGCA
1 ATAAATAGTGATAAGAGTGGAGACAATGAAAGACCAAGTTTAGCA
26176680 TTACATAGTA
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
49 5 0.12
50 35 0.88
ACGTcount: A:0.43, C:0.07, G:0.25, T:0.24
Consensus pattern (49 bp):
ATAAATAGTGATAAGAGTGGAGACAATGAAAGACCAAGTTTAGCAATGT
Found at i:26178858 original size:12 final size:12
Alignment explanation
Indices: 26178841--26178889 Score: 53
Period size: 12 Copynumber: 3.8 Consensus size: 12
26178831 CTTCAAGATA
26178841 AGTCTTGAAATC
1 AGTCTTGAAATC
*
26178853 AGTCTTGAATCAAATA
1 AGTCTTG----AAATC
26178869 AGTCTTGAAATC
1 AGTCTTGAAATC
26178881 AGTCTTGAA
1 AGTCTTGAA
26178890 TCAATCTCTA
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
12 20 0.65
16 11 0.35
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (12 bp):
AGTCTTGAAATC
Found at i:26178869 original size:28 final size:29
Alignment explanation
Indices: 26178833--26178893 Score: 115
Period size: 28 Copynumber: 2.1 Consensus size: 29
26178823 TAAAAAATCT
26178833 TCAAGATAAGTCTTGAAATCAGTCTTGAA
1 TCAAGATAAGTCTTGAAATCAGTCTTGAA
26178862 TCAA-ATAAGTCTTGAAATCAGTCTTGAA
1 TCAAGATAAGTCTTGAAATCAGTCTTGAA
26178890 TCAA
1 TCAA
26178894 TCTCTATATT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 28 0.88
29 4 0.12
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.31
Consensus pattern (29 bp):
TCAAGATAAGTCTTGAAATCAGTCTTGAA
Found at i:26179364 original size:9 final size:9
Alignment explanation
Indices: 26179350--26179389 Score: 62
Period size: 9 Copynumber: 4.4 Consensus size: 9
26179340 AAGAATCCTT
26179350 GAAAAGTGA
1 GAAAAGTGA
26179359 GAAAAGTGA
1 GAAAAGTGA
*
26179368 AAAAAGTGA
1 GAAAAGTGA
*
26179377 GAAAAATGA
1 GAAAAGTGA
26179386 GAAA
1 GAAA
26179390 TATAAATGGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.62, C:0.00, G:0.28, T:0.10
Consensus pattern (9 bp):
GAAAAGTGA
Found at i:26179959 original size:16 final size:16
Alignment explanation
Indices: 26179929--26179963 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
26179919 TATTATTTTG
26179929 AAATTTAAAATATATA
1 AAATTTAAAATATATA
26179945 AAATCTTAAAA-ATATA
1 AAAT-TTAAAATATATA
26179961 AAA
1 AAA
26179964 AAATATACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (16 bp):
AAATTTAAAATATATA
Found at i:26181245 original size:20 final size:21
Alignment explanation
Indices: 26181200--26181270 Score: 78
Period size: 21 Copynumber: 3.4 Consensus size: 21
26181190 GTAATTATTT
*
26181200 ATATTTCTATAATTATTTTAAT-
1 ATATTT-TATAATT-TTTAAATA
26181222 -TATTTTAT-ATTTTTGAAA-A
1 ATATTTTATAATTTTT-AAATA
26181241 ATATTTTATAATTTTTAAATA
1 ATATTTTATAATTTTTAAATA
26181262 ATATTTTAT
1 ATATTTTAT
26181271 GTGCTTTTAA
Statistics
Matches: 43, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
18 3 0.07
19 5 0.12
20 14 0.33
21 21 0.49
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.59
Consensus pattern (21 bp):
ATATTTTATAATTTTTAAATA
Found at i:26185882 original size:33 final size:32
Alignment explanation
Indices: 26185845--26185955 Score: 99
Period size: 33 Copynumber: 3.6 Consensus size: 32
26185835 AGATTAATTT
26185845 ATATTTTATATAGCATTATATTAAAAATTTAAA
1 ATATTTTATATAGCATTATATT-AAAATTTAAA
* * * *
26185878 ATATTTCATGTATCATTATATTAAATTATTAAA
1 ATATTTTATATAGCATTATATTAAAAT-TTAAA
*
26185911 ATA--TTAT-T-G-ATTATATT-TAATTATAAA
1 ATATTTTATATAGCATTATATTAAAATT-TAAA
*
26185938 ATATTTTATATATCATTA
1 ATATTTTATATAGCATTA
26185956 ATTTTACATA
Statistics
Matches: 62, Mismatches: 9, Indels: 15
0.72 0.10 0.17
Matches are distributed among these distances:
26 1 0.02
27 9 0.15
28 8 0.13
29 4 0.06
30 2 0.03
31 3 0.05
32 8 0.13
33 27 0.44
ACGTcount: A:0.44, C:0.04, G:0.03, T:0.50
Consensus pattern (32 bp):
ATATTTTATATAGCATTATATTAAAATTTAAA
Found at i:26187787 original size:138 final size:138
Alignment explanation
Indices: 26187189--26187879 Score: 973
Period size: 136 Copynumber: 5.0 Consensus size: 138
26187179 TAGAAAAATG
* * * *
26187189 AATTATATTCTTTTCAAAATAATATTAATTTCCACATCTTTTATATTTTGACTGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATATCTTTTATATTTTGACCGAAATTAATTAA
* * * * *
26187254 TATAAATGTTTATATTAATAAATTCTGT--AATATATATAGTTAATAATTTGTATAAATCAAATT
66 TATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATAAATCAAATT
26187317 CATATATT
131 CATATATT
* *
26187325 AATTATATTCTTTCCAAAA-AATATTAATTTCCATATTTTTTTATATTTTGACTGAAATTAATTA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATA-TCTTTTATATTTTGACCGAAATTAATTA
* * * *
26187389 ATATAACTGTTTATATTAATAAATTCGGT--GATATATATAATTCATATTTTGTATGAATCAAAT
65 ATATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATAAATCAAAT
*
26187452 TTATATATT
130 TCATATATT
* * * *
26187461 AATTATATTCTTTCCAAAAAAATTTTAATTTCCATGTCTTTTATATTTTAACCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATATCTTTTATATTTTGACCGAAATTAATTAA
* * * * *
26187526 TAGAATTATTTATATTAATGAATTCGGTAAAATGTATACAATTAAATATTTTGTATAAATCAAAT
66 TATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATT-AATATTTTGTATAAATCAAAT
26187591 TCATATATT
130 TCATATATT
* *
26187600 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTATTTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATATCTTTTATATTTTGACCGAAATTAATTAA
* * *
26187665 TATAACTGTTTATATTACTAAAATCGGTAAAATATATAAAATTAATATTTTGTATAAATCAAATT
66 TATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATAAATCAAATT
26187730 CATATATT
131 CATATATT
26187738 AATTATATTCTTTCCAAAAGAATATTAAATTT-CATATCTTTTATATTTTGACCGAAATTAATTA
1 AATTATATTCTTTCCAAAAGAATATT-AATTTCCATATCTTTTATATTTTGACCGAAATTAATTA
* ** * * *
26187802 AT-TAAACTATTTATATTAATAAATTCTATAAAATATATACAATTAATATTTTGTCTGAATTAAA
65 ATAT-AACTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATAAATCAAA
26187866 TTCATATATT
129 TTCATATATT
26187876 AATT
1 AATT
26187880 TCCATGTCTT
Statistics
Matches: 499, Mismatches: 49, Indels: 12
0.89 0.09 0.02
Matches are distributed among these distances:
135 15 0.03
136 178 0.36
137 15 0.03
138 163 0.33
139 128 0.26
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.46
Consensus pattern (138 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTCCATATCTTTTATATTTTGACCGAAATTAATTAA
TATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATAAATCAAATT
CATATATT
Found at i:26187820 original size:277 final size:273
Alignment explanation
Indices: 26187189--26187879 Score: 996
Period size: 277 Copynumber: 2.5 Consensus size: 273
26187179 TAGAAAAATG
* * * *
26187189 AATTATATTCTTTTCAAAATAATATTAATTTCCACATCTTTTATATTTTGACTGAAATTAATTAA
1 AATTATATTCTTTCCAAAAAAATATTAATTTCCATATCTTTTATATTTTGACCGAAATTAATTAA
* * * *
26187254 TATAAATGTTTATATTAATAAATTCTGT--AATATATATAGTTAATAATTTGTATAAATCAAATT
66 T-TAAATATTTATATTAATAAATTCTGTAAAATATATACAATTAATATTTTGTATAAATCAAATT
* * *
26187317 CATATATTAATTATATTCTTTCCAAAAAATATTAATTTCCATATTTTTTTATATTTTGACTGAAA
130 CATATATTAATTATATTCTTTCCAAAAAATATTAATTTCCATAGTCTTTTATATTTTGACCGAAA
* * * * *
26187382 TTAATTAATATAACTGTTTATATTAATAAATTCGGTGATATATATAATTCATATTTTGTATGAAT
195 TTAATTAATATAACTGTTTATATTAATAAAATCGGTAATATATAAAATTAATATTTTGTATAAAT
*
26187447 CAAATTTATATATT
260 CAAATTCATATATT
* * *
26187461 AATTATATTCTTTCCAAAAAAATTTTAATTTCCATGTCTTTTATATTTTAACCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAAAATATTAATTTCCATATCTTTTATATTTTGACCGAAATTAATTAA
* * *
26187526 -TAGAATTATTTATATTAATGAATTCGGTAAAATGTATACAATTAAATATTTTGTATAAATCAAA
66 TTA-AA-TATTTATATTAATAAATTCTGTAAAATATATACAATT-AATATTTTGTATAAATCAAA
26187590 TTCATATATTAATTATATTCTTTCCAAAAGAATATTAATTTCCAT-GTCTTTTATATTTTGACCG
128 TTCATATATTAATTATATTCTTTCCAAAA-AATATTAATTTCCATAGTCTTTTATATTTTGACCG
* *
26187654 AAATTATTTAATATAACTGTTTATATTACTAAAATCGGTAAAATATATAAAATTAATATTTTGTA
192 AAATTAATTAATATAACTGTTTATATTAATAAAATCGGT--AATATATAAAATTAATATTTTGTA
26187719 TAAATCAAATTCATATATT
255 TAAATCAAATTCATATATT
*
26187738 AATTATATTCTTTCCAAAAGAATATTAAATTT-CATATCTTTTATATTTTGACCGAAATTAATTA
1 AATTATATTCTTTCCAAAAAAATATT-AATTTCCATATCTTTTATATTTTGACCGAAATTAATTA
* * * *
26187802 ATTAAACTATTTATATTAATAAATTCTATAAAATATATACAATTAATATTTTGTCTGAATTAAAT
65 ATTAAA-TATTTATATTAATAAATTCTGTAAAATATATACAATTAATATTTTGTATAAATCAAAT
26187867 TCATATATTAATT
129 TCATATATTAATT
26187880 TCCATGTCTT
Statistics
Matches: 372, Mismatches: 37, Indels: 16
0.88 0.09 0.04
Matches are distributed among these distances:
270 2 0.01
271 2 0.01
272 77 0.21
274 10 0.03
275 100 0.27
276 46 0.12
277 128 0.34
278 7 0.02
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.46
Consensus pattern (273 bp):
AATTATATTCTTTCCAAAAAAATATTAATTTCCATATCTTTTATATTTTGACCGAAATTAATTAA
TTAAATATTTATATTAATAAATTCTGTAAAATATATACAATTAATATTTTGTATAAATCAAATTC
ATATATTAATTATATTCTTTCCAAAAAATATTAATTTCCATAGTCTTTTATATTTTGACCGAAAT
TAATTAATATAACTGTTTATATTAATAAAATCGGTAATATATAAAATTAATATTTTGTATAAATC
AAATTCATATATT
Found at i:26187922 original size:138 final size:137
Alignment explanation
Indices: 26187224--26187879 Score: 612
Period size: 138 Copynumber: 4.8 Consensus size: 137
26187214 TAATTTCCAC
* * * *
26187224 ATCTTTTATATTTTGACTGAAATTAATTAATATAAATGTTTATATTAATAAATTCTG-T--AATA
1 ATCTTTTATATTTTGACCGAAATTAATTAATATAACTATTTATATTAATAAAATC-GATAAAATA
* * * *
26187286 TATATAGTTAATAATTTGTATAAATCAAATTCATATATTAATTATATTCTTTCCAAAA-AATA-T
65 TATAAAATTAATATTTTGTATAAATCAAATTCATATATTAATTATATTCTTT-CAAAAGAATACC
* * *
26187349 TAATTTCCATA
129 AAATAT--AAA
* * * * * * *
26187360 TTTTTTTATATTTTGACTGAAATTAATTAATATAACTGTTTATATTAATAAATTCGGT--GATAT
1 ATCTTTTATATTTTGACCGAAATTAATTAATATAACTATTTATATTAATAAAATCGATAAAATAT
* * * * * ***
26187423 ATATAATTCATATTTTGTATGAATCAAATTTATATATTAATTATATTCTTTCCAAAAAAAT-TTT
66 ATAAAATTAATATTTTGTATAAATCAAATTCATATATTAATTATATTCTTT-CAAAAGAATACCA
* * *
26187487 AATTTCCAT
130 AATAT-AAA
* * * * * * * *
26187496 GTCTTTTATATTTTAACCGAAATTAATTAATAGAATTATTTATATTAATGAATTCGGTAAAATGT
1 ATCTTTTATATTTTGACCGAAATTAATTAATATAACTATTTATATTAATAAAATCGATAAAATAT
* *
26187561 ATACAATTAAATATTTTGTATAAATCAAATTCATATATTAATTATATTCTTTCCAAAAGAATA-T
66 ATAAAATT-AATATTTTGTATAAATCAAATTCATATATTAATTATATTCTTT-CAAAAGAATACC
* * * *
26187625 TAATTTCCAT
129 AAATAT-AAA
* * * * *
26187635 GTCTTTTATATTTTGACCGAAATTATTTAATATAACTGTTTATATTACTAAAATCGGTAAAATAT
1 ATCTTTTATATTTTGACCGAAATTAATTAATATAACTATTTATATTAATAAAATCGATAAAATAT
**
26187700 ATAAAATTAATATTTTGTATAAATCAAATTCATATATTAATTATATTCTTTCCAAAAGAATATTA
66 ATAAAATTAATATTTTGTATAAATCAAATTCATATATTAATTATATTCTTT-CAAAAGAATACCA
* * *
26187765 AATTTCAT
130 AATATAAA
* *
26187773 ATCTTTTATATTTTGACCGAAATTAATTAAT-TAAACTATTTATATTAATAAATTCTATAAAATA
1 ATCTTTTATATTTTGACCGAAATTAATTAATAT-AACTATTTATATTAATAAAATCGATAAAATA
* * * *
26187837 TATACAATTAATATTTTGTCTGAATTAAATTCATATATTAATT
65 TATAAAATTAATATTTTGTATAAATCAAATTCATATATTAATT
26187880 TCCATGTCTT
Statistics
Matches: 462, Mismatches: 49, Indels: 16
0.88 0.09 0.03
Matches are distributed among these distances:
135 1 0.00
136 160 0.35
137 11 0.02
138 161 0.35
139 129 0.28
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.46
Consensus pattern (137 bp):
ATCTTTTATATTTTGACCGAAATTAATTAATATAACTATTTATATTAATAAAATCGATAAAATAT
ATAAAATTAATATTTTGTATAAATCAAATTCATATATTAATTATATTCTTTCAAAAGAATACCAA
ATATAAA
Found at i:26189323 original size:14 final size:14
Alignment explanation
Indices: 26189306--26189334 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
26189296 TCTAGTGCCC
26189306 TTAGTGTAGTTATT
1 TTAGTGTAGTTATT
26189320 TTAGTGTAGTTATT
1 TTAGTGTAGTTATT
26189334 T
1 T
26189335 CATCTTTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.21, T:0.59
Consensus pattern (14 bp):
TTAGTGTAGTTATT
Found at i:26198588 original size:30 final size:30
Alignment explanation
Indices: 26198553--26198626 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
26198543 AGTTTTTCCC
26198553 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ACTGAGCTTAATTT
* *
26198583 AGCTCGTTTGAGCTCAACTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAACTGAGCTTAATTT
26198613 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
26198627 TGGCTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.38
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAACTGAGCTTAATTT
Found at i:26200144 original size:11 final size:10
Alignment explanation
Indices: 26200128--26200157 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
26200118 TTCGTAATGT
26200128 AAAAAAAAGTC
1 AAAAAAAA-TC
26200139 AAAAAAAATC
1 AAAAAAAATC
26200149 AAAAAAAAT
1 AAAAAAAAT
26200158 TTGAGTTGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 11 0.58
11 8 0.42
ACGTcount: A:0.80, C:0.07, G:0.03, T:0.10
Consensus pattern (10 bp):
AAAAAAAATC
Found at i:26200254 original size:11 final size:12
Alignment explanation
Indices: 26200231--26200255 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26200221 AAAAGAGAAG
26200231 AAATTCAAAAAA
1 AAATTCAAAAAA
26200243 AAATTCAAAAAA
1 AAATTCAAAAAA
26200255 A
1 A
26200256 TCGAAAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (12 bp):
AAATTCAAAAAA
Found at i:26201363 original size:18 final size:18
Alignment explanation
Indices: 26201337--26201395 Score: 82
Period size: 18 Copynumber: 3.3 Consensus size: 18
26201327 AAATTGAAAG
* *
26201337 AAAACAAAAAGAAAACGA
1 AAAAGAAAAAGAAATCGA
* *
26201355 AAAAGAAAAAGAAATTGC
1 AAAAGAAAAAGAAATCGA
26201373 AAAAGAAAAAGAAATCGA
1 AAAAGAAAAAGAAATCGA
26201391 AAAAG
1 AAAAG
26201396 TGAGAGAAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.73, C:0.07, G:0.15, T:0.05
Consensus pattern (18 bp):
AAAAGAAAAAGAAATCGA
Found at i:26201435 original size:13 final size:12
Alignment explanation
Indices: 26201311--26201467 Score: 55
Period size: 12 Copynumber: 13.6 Consensus size: 12
26201301 AGAAAAGGAG
*
26201311 AAAGAGATTGAA
1 AAAGAAATTGAA
26201323 AAAGAAATTG--
1 AAAGAAATTGAA
**
26201333 AAAGAAA-ACAA
1 AAAGAAATTGAA
**
26201344 AAAGAAAACGAA
1 AAAGAAATTGAA
**
26201356 AAAGAAAAAGAA
1 AAAGAAATTGAA
** *
26201368 ATTGCAAA-AGAA
1 AAAG-AAATTGAA
*
26201380 AAAGAAATCGAA
1 AAAGAAATTGAA
** **
26201392 AAAGTGAGAGAA
1 AAAGAAATTGAA
*
26201404 AAAGAAAATGAAGA
1 AAAGAAATTG-A-A
26201418 AAAGATAATTGAA
1 AAAGA-AATTGAA
26201431 AAAGAAATTG--
1 AAAGAAATTGAA
26201441 --AG-AA-TGAA
1 AAAGAAATTGAA
*
26201449 AAAAAAATTGAA
1 AAAGAAATTGAA
26201461 AAAGAAA
1 AAAGAAA
26201468 AAGCGGAAAA
Statistics
Matches: 109, Mismatches: 22, Indels: 28
0.69 0.14 0.18
Matches are distributed among these distances:
6 2 0.02
7 2 0.02
8 2 0.02
10 8 0.07
11 12 0.11
12 62 0.57
13 10 0.09
14 7 0.06
15 4 0.04
ACGTcount: A:0.68, C:0.03, G:0.18, T:0.11
Consensus pattern (12 bp):
AAAGAAATTGAA
Found at i:26201477 original size:57 final size:52
Alignment explanation
Indices: 26201303--26201487 Score: 151
Period size: 57 Copynumber: 3.4 Consensus size: 52
26201293 ATTGAGCGAG
* *
26201303 AAAA-GGAGAAAGAGATTGAAAAAGAAATTGAAA-GAAAACAAAAAGAAAACGA
1 AAAAGGGA-AAAGAAATTGAAAAAGAAATTGAAATGAAAA-AAAAAGAAAAAGA
* * ** * *
26201355 AAAA-GAAAAAGAAATTGCAAAAGAAAAAGAAATCGAAAAAGTGAGAGAAAAAGA
1 AAAAGGGAAAAGAAATTGAAAAAGAAATTGAAAT-GAAAAA--AAAAGAAAAAGA
* *
26201409 AAATGAAGAAAAGATAATTGAAAAAGAAATTGAGAATGAAAAAAAAATTGAAAAAGA
1 AAAAG-GGAAAAGA-AATTGAAAAAGAAATTGA-AATGAAAAAAAAA--GAAAAAGA
26201466 AAAAGCGGAAAAAGAAATTGAA
1 AAAAG-GG-AAAAGAAATTGAA
26201488 GGAGAGCTTG
Statistics
Matches: 103, Mismatches: 19, Indels: 17
0.74 0.14 0.12
Matches are distributed among these distances:
51 21 0.20
52 7 0.07
53 5 0.05
54 12 0.12
55 2 0.02
56 6 0.06
57 41 0.40
58 9 0.09
ACGTcount: A:0.67, C:0.03, G:0.20, T:0.10
Consensus pattern (52 bp):
AAAAGGGAAAAGAAATTGAAAAAGAAATTGAAATGAAAAAAAAAGAAAAAGA
Found at i:26201482 original size:6 final size:6
Alignment explanation
Indices: 26201333--26201470 Score: 64
Period size: 6 Copynumber: 22.7 Consensus size: 6
26201323 AAAGAAATTG
* * ** *
26201333 AAAG-A AAACAA AAAGAA AACGAA AAAGAA AAAGAA ATTGCA AAAGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
** ** * * **
26201380 AAAGAA ATCGAA AAAGTG AGAGAA AAAGAA AATGAAGA AAAGATA ATTGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAG-A-A AAAGA-A AAAGAA
** * * *
26201431 AAAGAA ATTGAG AATGAA AAA-AA AATTGAA AAAGAA AAAG
1 AAAGAA AAAGAA AAAGAA AAAGAA AA-AGAA AAAGAA AAAG
26201471 CGGAAAAAGA
Statistics
Matches: 93, Mismatches: 35, Indels: 9
0.68 0.26 0.07
Matches are distributed among these distances:
5 7 0.08
6 72 0.77
7 10 0.11
8 4 0.04
ACGTcount: A:0.70, C:0.03, G:0.18, T:0.09
Consensus pattern (6 bp):
AAAGAA
Found at i:26203345 original size:20 final size:20
Alignment explanation
Indices: 26203322--26203375 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
26203312 AGTTTTTCCC
*
26203322 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
26203342 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
26203362 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
26203376 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:26203357 original size:30 final size:30
Alignment explanation
Indices: 26203322--26203395 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
26203312 AGTTTTTCCC
26203322 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
26203352 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
26203382 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
26203396 TGGCTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:26203385 original size:20 final size:20
Alignment explanation
Indices: 26203322--26203386 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
26203312 AGTTTTTCCC
* * * *
26203322 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
26203342 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
26203361 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
26203382 AGCTC
1 AGCTC
26203387 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:26219871 original size:41 final size:41
Alignment explanation
Indices: 26219729--26219865 Score: 202
Period size: 41 Copynumber: 3.3 Consensus size: 41
26219719 AGAAAAATGA
*
26219729 TGAATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCT
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCC
* ***
26219770 TGAATTGCACATACGTGCCCCTATTTGTACTTCAATACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCC
* * *
26219811 TGAATTGCACATATGTTCCCTTGTTTGTACTTTGGTACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCC
26219852 TGAATTGCACATAC
1 TGAATTGCACATAC
26219866 ATTCCCCTAT
Statistics
Matches: 83, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 83 1.00
ACGTcount: A:0.21, C:0.27, G:0.16, T:0.36
Consensus pattern (41 bp):
TGAATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCC
Found at i:26229460 original size:31 final size:31
Alignment explanation
Indices: 26229422--26229482 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
26229412 GATAGAAGAA
26229422 TAGAGTGAATCGAATCTTAATTATGGGTGAG
1 TAGAGTGAATCGAATCTTAATTATGGGTGAG
26229453 TAGAGTGAATCGAATCTTAATTATGGGTGA
1 TAGAGTGAATCGAATCTTAATTATGGGTGA
26229483 TTACCTAGCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.33, C:0.07, G:0.28, T:0.33
Consensus pattern (31 bp):
TAGAGTGAATCGAATCTTAATTATGGGTGAG
Found at i:26231170 original size:96 final size:96
Alignment explanation
Indices: 26230968--26231177 Score: 219
Period size: 96 Copynumber: 2.2 Consensus size: 96
26230958 TAATGTGATG
* ** * ** * * *
26230968 GCACAAAGCCATTAGTAGCAGTGATATGATTGGCACACAACCATTAGTAATGGTAACATGATCAG
1 GCACAAAGCCATCAGTAATAGTGAAATGATCAGCACACAACCATCAATAACGGTAACATGATCAG
*
26231033 CACAAAGCCATCAGTAACAGTGATATGATCA
66 CACAAAGCCATCAGTAACAATGATATGATCA
* * *
26231064 GCACACAGCCATCCGTAATAGTGAAATGATCAGCACACAACCATCAATAACGGTAATATGATC-G
1 GCACAAAGCCATCAGTAATAGTGAAATGATCAGCACACAACCATCAATAACGGTAACATGATCAG
* * *
26231128 ACACAAAGGCATCAGTAATAAT-ACTATGAT-T
66 -CACAAAGCCATCAGTAACAATGA-TATGATCA
*
26231159 GCCATAAAGCCATCAGTAA
1 G-CACAAAGCCATCAGTAA
26231178 CGGTACTATG
Statistics
Matches: 92, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
95 3 0.03
96 89 0.97
ACGTcount: A:0.40, C:0.21, G:0.18, T:0.21
Consensus pattern (96 bp):
GCACAAAGCCATCAGTAATAGTGAAATGATCAGCACACAACCATCAATAACGGTAACATGATCAG
CACAAAGCCATCAGTAACAATGATATGATCA
Found at i:26231204 original size:32 final size:32
Alignment explanation
Indices: 26230943--26231205 Score: 187
Period size: 32 Copynumber: 8.3 Consensus size: 32
26230933 GAATGACTAT
* * *
26230943 AAGCCATAAGT-ACAGTAATGTGAT-GGCACA
1 AAGCCATCAGTAACAGTGATATGATCGGCACA
* * *
26230973 AAGCCATTAGTAGCAGTGATATGATTGGCACA
1 AAGCCATCAGTAACAGTGATATGATCGGCACA
* ** * * *
26231005 CAA-CCATTAGTAATGGTAACATGATCAGCACA
1 -AAGCCATCAGTAACAGTGATATGATCGGCACA
*
26231037 AAGCCATCAGTAACAGTGATATGATCAGCACA
1 AAGCCATCAGTAACAGTGATATGATCGGCACA
* * * * *
26231069 CAGCCATCCGTAATAGTGAAATGATCAGCACA
1 AAGCCATCAGTAACAGTGATATGATCGGCACA
* * * *
26231101 CAA-CCATCAATAACGGTAATATGATCGACACA
1 -AAGCCATCAGTAACAGTGATATGATCGGCACA
* * * * * *
26231133 AAGGCATCAGTAATAAT-ACTATGATTGCCATA
1 AAGCCATCAGTAACAGTGA-TATGATCGGCACA
*
26231165 AAGCCATCAGTAACGGT-ACTATGATCGGCACA
1 AAGCCATCAGTAACAGTGA-TATGATCGGCACA
26231197 AAGCCATCA
1 AAGCCATCA
26231206 ATAGCATCAC
Statistics
Matches: 182, Mismatches: 44, Indels: 12
0.76 0.18 0.05
Matches are distributed among these distances:
30 10 0.05
31 15 0.08
32 154 0.85
33 3 0.02
ACGTcount: A:0.39, C:0.21, G:0.19, T:0.21
Consensus pattern (32 bp):
AAGCCATCAGTAACAGTGATATGATCGGCACA
Found at i:26231359 original size:27 final size:27
Alignment explanation
Indices: 26231329--26231608 Score: 321
Period size: 27 Copynumber: 10.4 Consensus size: 27
26231319 GCAGTATATC
*
26231329 GTCATTTTACCCTACAGGGACATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
*
26231356 GTCATTTTACCCTATAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
** * *
26231383 AACATTTTAACCTACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* *
26231410 GTCATTTTACCCTACACGGGCATTACA
1 GTCATTTTACCCTACAGGGGCATTACG
*
26231437 GTCATTTCACCCTACAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* *
26231464 GTCATTTCACCCTACAGGGGCATTATG
1 GTCATTTTACCCTACAGGGGCATTACG
* *
26231491 GTTATTTTACCCTACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * * * *
26231518 ATCATTTTACCTTATAGGGGTATTTCG
1 GTCATTTTACCCTACAGGGGCATTACG
* * *
26231545 GT-ATTCTACCCTAC-GGGGATATTTCG
1 GTCATTTTACCCTACAGGGG-CATTACG
* * *
26231571 GTCATTTTACCCTATAGGGGCATTTCA
1 GTCATTTTACCCTACAGGGGCATTACG
26231598 GTCATTTTACC
1 GTCATTTTACC
26231609 TTTTGAGGGT
Statistics
Matches: 216, Mismatches: 34, Indels: 6
0.84 0.13 0.02
Matches are distributed among these distances:
25 4 0.02
26 18 0.08
27 190 0.88
28 4 0.02
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGCATTACG
Found at i:26232316 original size:24 final size:24
Alignment explanation
Indices: 26232291--26232337 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
26232281 CCCAAATCCC
26232291 AATATTCTCTCCTCAAATCTCTCCA
1 AATATTC-CTCCTCAAATCTCTCCA
*
26232316 AATATTCCTCCTCAATTCTCTC
1 AATATTCCTCCTCAAATCTCTC
26232338 TGTGACTAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.26, C:0.36, G:0.00, T:0.38
Consensus pattern (24 bp):
AATATTCCTCCTCAAATCTCTCCA
Found at i:26265325 original size:40 final size:40
Alignment explanation
Indices: 26265144--26265365 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
26265134 TCCTCGTTCA
* * * *
26265144 AATGCCTTCGGGACATAGCCCGG-TTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
26265182 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
26265222 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
26265262 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
26265302 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
26265342 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
26265366 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
38 22 0.14
39 15 0.09
40 115 0.72
41 8 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:26265374 original size:41 final size:41
Alignment explanation
Indices: 26265297--26265374 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
26265287 TTAGTATCTC
* * *
26265297 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
26265338 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
26265375 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:26273151 original size:39 final size:39
Alignment explanation
Indices: 26273013--26273190 Score: 229
Period size: 40 Copynumber: 4.6 Consensus size: 39
26273003 TCCTCGTTCA
* *
26273013 AATGCCTTCGGACAT-AGCC-GATTT-ACAACTCGCACG
1 AATGCCTTCGGACTTAACCCGGATTTAACAACTCGCACG
26273049 AATGCCTTCGGAC-TAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGACTTAACCCGGATTTAACAACTCGCACG
*
26273087 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTC-GGACTTAACCCGGATTTAACAACTCGCACG
** * *
26273127 AATGCCTTCGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGACTTAACCCGGATTTAACAACTCGCACG
* *
26273166 AAGGCCTTCGGATCTTAATCCGGAT
1 AATGCCTTCGGA-CTTAACCCGGAT
26273191 ATATTCACTT
Statistics
Matches: 129, Mismatches: 7, Indels: 8
0.90 0.05 0.06
Matches are distributed among these distances:
35 1 0.01
36 16 0.12
37 5 0.04
38 21 0.16
39 42 0.33
40 44 0.34
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:26273173 original size:79 final size:78
Alignment explanation
Indices: 26273039--26273190 Score: 225
Period size: 79 Copynumber: 1.9 Consensus size: 78
26273029 GCCGATTTAC
* *
26273039 AACTCGCACGAATGCCTTCGGACTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGA-CTT
1 AACTCGCACGAATGCCTTCGGACTAACCCGGATTTAACAACTCGCACAAAGGCCTTC-GGATCTT
26273103 AACCCGGATTTAAT
65 AACCCGGATTTAAT
** *
26273117 AACTCGCACGAATGCCTTCGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGATCTT
1 AACTCGCACGAATGCCTTCGGAC-TAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGATCTT
*
26273182 AATCCGGAT
65 AACCCGGAT
26273191 ATATTCACTT
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
78 26 0.39
79 40 0.61
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (78 bp):
AACTCGCACGAATGCCTTCGGACTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGATCTTA
ACCCGGATTTAAT
Found at i:26273213 original size:79 final size:79
Alignment explanation
Indices: 26273039--26273229 Score: 208
Period size: 79 Copynumber: 2.4 Consensus size: 79
26273029 GCCGATTTAC
* * * *
26273039 AACTCGCACGAATGCCTTCGGAC-TAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTT
1 AACTAGCACGAAAGCCTTCGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTT
*
26273103 AACCCGGATTTAAT
66 AACCCGGATATAAT
* * ** *
26273117 AACTCGCACGAATGCCTTCGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCT
1 AACTAGCACGAAAGCCTTCGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGA-CT
* *
26273181 TAATCCGGATATATT
65 TAACCCGGATATAAT
* *
26273196 CACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
1 AAC-TAGCACGAAAGCCTTC-GGACTTAACCCGGA
26273230 CAGCATTCAA
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
78 26 0.27
79 53 0.55
80 18 0.19
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (79 bp):
AACTAGCACGAAAGCCTTCGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTT
AACCCGGATATAAT
Found at i:26273229 original size:40 final size:38
Alignment explanation
Indices: 26273042--26273229 Score: 159
Period size: 40 Copynumber: 4.8 Consensus size: 38
26273032 GATTTACAAC
* *
26273042 TCGCACGAATGCCTTCGGAC-TAACCCGGATTTAACAAC-
1 TCGCAC-AAAGCCTTCGGACTTAACCCGGATTTAA-TACT
*
26273080 TCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-
1 TCGCAC-AAAGCCTTC-GGACTTAACCCGGATTTAAT-ACT
* *
26273120 TCGCACGAATGCCTTCGGACTTAACCCGGATTTAGTA-T
1 TCGCAC-AAAGCCTTCGGACTTAACCCGGATTTAATACT
* * *
26273158 CTCGCACAAAGGCCTTCGGATCTTAATCCGGATATATTCACT
1 -TCGCACAAA-GCCTTCGGA-CTTAACCCGGATTTAAT-ACT
* *
26273200 TAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 TCGCACAAAGCCTTC-GGACTTAACCCGGA
26273230 CAGCATTCAA
Statistics
Matches: 131, Mismatches: 9, Indels: 18
0.83 0.06 0.11
Matches are distributed among these distances:
38 19 0.15
39 38 0.29
40 61 0.47
41 12 0.09
42 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (38 bp):
TCGCACAAAGCCTTCGGACTTAACCCGGATTTAATACT
Found at i:26276985 original size:13 final size:13
Alignment explanation
Indices: 26276967--26277000 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
26276957 TCTAAGTAAG
26276967 GTCACACGGCCAA
1 GTCACACGGCCAA
26276980 GTCACACGGCCAA
1 GTCACACGGCCAA
26276993 GTCACACG
1 GTCACACG
26277001 CCTGTGTGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.29, C:0.38, G:0.24, T:0.09
Consensus pattern (13 bp):
GTCACACGGCCAA
Found at i:26277141 original size:15 final size:15
Alignment explanation
Indices: 26277121--26277171 Score: 61
Period size: 15 Copynumber: 3.4 Consensus size: 15
26277111 CACACGACCA
26277121 TGTCACCAAGCCATG
1 TGTCACCAAGCCATG
*
26277136 TGTCACACACGGCCA--
1 TGTCAC-CA-AGCCATG
26277151 TGTCACCAAGCCATG
1 TGTCACCAAGCCATG
26277166 TGTCAC
1 TGTCAC
26277172 ACACGGCTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
13 4 0.13
14 2 0.07
15 18 0.60
16 2 0.07
17 4 0.13
ACGTcount: A:0.25, C:0.35, G:0.20, T:0.20
Consensus pattern (15 bp):
TGTCACCAAGCCATG
Found at i:26277186 original size:30 final size:30
Alignment explanation
Indices: 26277110--26277178 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
26277100 TCTACAGGGG
*
26277110 ACACACGACCATGTCACCAAGCCATGTGTC
1 ACACACGGCCATGTCACCAAGCCATGTGTC
26277140 ACACACGGCCATGTCACCAAGCCATGTGTC
1 ACACACGGCCATGTCACCAAGCCATGTGTC
26277170 ACACACGGC
1 ACACACGGC
26277179 TGAGTCACAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.29, C:0.38, G:0.19, T:0.14
Consensus pattern (30 bp):
ACACACGGCCATGTCACCAAGCCATGTGTC
Found at i:26280964 original size:45 final size:44
Alignment explanation
Indices: 26280904--26281011 Score: 117
Period size: 44 Copynumber: 2.4 Consensus size: 44
26280894 TTCCACTGTG
* * ** * *
26280904 ACTTCAGGGAAATAAGATTCGCTATTTTCAGTCTGCACCACTGCA
1 ACTTCAGGGAGATAAGATTAG-TAGCTTCAATCTGCACCACTACA
* *
26280949 ACTTCAGGGAGATAAGATTAGTGGCTTCAATCTGCTCCACTACA
1 ACTTCAGGGAGATAAGATTAGTAGCTTCAATCTGCACCACTACA
* *
26280993 ACTTTAGGGAGATGAGATT
1 ACTTCAGGGAGATAAGATT
26281012 TGCCATGATG
Statistics
Matches: 53, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
44 34 0.64
45 19 0.36
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (44 bp):
ACTTCAGGGAGATAAGATTAGTAGCTTCAATCTGCACCACTACA
Found at i:26281660 original size:43 final size:44
Alignment explanation
Indices: 26281574--26281672 Score: 121
Period size: 43 Copynumber: 2.3 Consensus size: 44
26281564 AGGAAAGCCT
* * **
26281574 AAAATGAATAAATTAATCATGATCGTAAATTTTGCTGGAATAC-
1 AAAATGAATAAATTAATCAAGATCGCAAATTTTGCAAGAATACA
* *
26281617 AAAATGAATAAATTAATCAAGATGGCATATTTTGCCAAG-ATACA
1 AAAATGAATAAATTAATCAAGATCGCAAATTTTG-CAAGAATACA
26281661 AAAATGAATAAA
1 AAAATGAATAAA
26281673 ATGGAAATAG
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
43 34 0.71
44 14 0.29
ACGTcount: A:0.49, C:0.09, G:0.13, T:0.28
Consensus pattern (44 bp):
AAAATGAATAAATTAATCAAGATCGCAAATTTTGCAAGAATACA
Found at i:26288479 original size:19 final size:20
Alignment explanation
Indices: 26288455--26288501 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
26288445 TTGTGAAACT
* *
26288455 TAATGCATATG-ATGCAATG
1 TAATGCAAATGCATGAAATG
26288474 TAATGCAAATGCATGAAATG
1 TAATGCAAATGCATGAAATG
26288494 -AATGCAAA
1 TAATGCAAA
26288502 AGAGGTATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.45, C:0.11, G:0.19, T:0.26
Consensus pattern (20 bp):
TAATGCAAATGCATGAAATG
Found at i:26295730 original size:28 final size:29
Alignment explanation
Indices: 26295695--26295772 Score: 86
Period size: 28 Copynumber: 2.7 Consensus size: 29
26295685 CGTAGGAAAG
* * *
26295695 CCTTTGTGGCGATCTCTGTTCTAAAGA-A
1 CCTTTGTGGCAATCTCTATTATAAAGATA
* * *
26295723 CCTTTGTGGAAATCTTTATTATAAGGATA
1 CCTTTGTGGCAATCTCTATTATAAAGATA
*
26295752 CCTTTGTGGCTATCTCTATTA
1 CCTTTGTGGCAATCTCTATTA
26295773 AAGGAATTCT
Statistics
Matches: 40, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
28 21 0.52
29 19 0.47
ACGTcount: A:0.23, C:0.18, G:0.18, T:0.41
Consensus pattern (29 bp):
CCTTTGTGGCAATCTCTATTATAAAGATA
Found at i:26295759 original size:29 final size:28
Alignment explanation
Indices: 26295722--26295777 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 28
26295712 GTTCTAAAGA
*
26295722 ACCTTTGTGGAAATCTTTATTATAAGGAT
1 ACCTTTGTGGAAATCTCTATTA-AAGGAT
**
26295751 ACCTTTGTGGCTATCTCTATTAAAGGA
1 ACCTTTGTGGAAATCTCTATTAAAGGA
26295778 ATTCTTGGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 5 0.21
29 19 0.79
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (28 bp):
ACCTTTGTGGAAATCTCTATTAAAGGAT
Found at i:26298272 original size:27 final size:27
Alignment explanation
Indices: 26298205--26298274 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
26298195 GACCTCTATT
*
26298205 CAAACTCTGAAGGGATAGTATATGTGA
1 CAAACTCTGAAGGGATAGTATATGCGA
** * *
26298232 TGAACTCTAAAGGGATAGTATGTGCGA
1 CAAACTCTGAAGGGATAGTATATGCGA
*
26298259 CAAACTCTGTAGGGAT
1 CAAACTCTGAAGGGAT
26298275 TGTACGTATA
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.34, C:0.13, G:0.27, T:0.26
Consensus pattern (27 bp):
CAAACTCTGAAGGGATAGTATATGCGA
Found at i:26300511 original size:27 final size:26
Alignment explanation
Indices: 26300480--26300657 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
26300470 TAAATTGTAC
26300480 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
26300507 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
26300533 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
26300561 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
26300589 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
26300616 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
26300643 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26300658 GGCTCAATAT
Statistics
Matches: 128, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 102 0.80
28 25 0.20
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:26300596 original size:82 final size:81
Alignment explanation
Indices: 26300481--26300636 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
26300471 AAATTGTACA
* * *
26300481 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
26300545 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
26300562 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
26300627 TGCGAGTTGA
65 TGCGAATTGA
26300637 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 17 0.26
82 48 0.73
83 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:26300648 original size:82 final size:81
Alignment explanation
Indices: 26300477--26300657 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
26300467 GATTAAATTG
* * *
26300477 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
26300542 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
26300558 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
26300622 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
26300640 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
26300658 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:26300668 original size:27 final size:27
Alignment explanation
Indices: 26300562--26300668 Score: 79
Period size: 27 Copynumber: 3.9 Consensus size: 27
26300552 TGACCATGCG
* * *
26300562 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
26300590 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
26300617 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
26300644 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
26300669 CATTCGTGAA
Statistics
Matches: 67, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
27 52 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:26304009 original size:85 final size:85
Alignment explanation
Indices: 26303866--26304039 Score: 339
Period size: 85 Copynumber: 2.0 Consensus size: 85
26303856 ATAGAAACCA
26303866 TCTTCTAATTTAGTTAGTTCATTTATTACCAAAACATAAGTTACTTGCTTTAAGCCCACTCATAA
1 TCTTCTAATTTAGTTAGTTCATTTATTACCAAAACATAAGTTACTTGCTTTAAGCCCACTCATAA
26303931 TATATTAATCATATTTATGC
66 TATATTAATCATATTTATGC
*
26303951 TCTTCTAATTTAGTTAGTTCATTTATTACCTAAACATAAGTTACTTGCTTTAAGCCCACTCATAA
1 TCTTCTAATTTAGTTAGTTCATTTATTACCAAAACATAAGTTACTTGCTTTAAGCCCACTCATAA
26304016 TATATTAATCATATTTATGC
66 TATATTAATCATATTTATGC
26304036 TCTT
1 TCTT
26304040 TTTAATAGTA
Statistics
Matches: 88, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 88 1.00
ACGTcount: A:0.32, C:0.18, G:0.07, T:0.44
Consensus pattern (85 bp):
TCTTCTAATTTAGTTAGTTCATTTATTACCAAAACATAAGTTACTTGCTTTAAGCCCACTCATAA
TATATTAATCATATTTATGC
Found at i:26316303 original size:15 final size:15
Alignment explanation
Indices: 26316283--26316312 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
26316273 CCTATAGAAA
26316283 TTAAATTAAACTAAT
1 TTAAATTAAACTAAT
26316298 TTAAATTAAACTAAT
1 TTAAATTAAACTAAT
26316313 GGAATTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (15 bp):
TTAAATTAAACTAAT
Found at i:26322230 original size:27 final size:27
Alignment explanation
Indices: 26322199--26322373 Score: 181
Period size: 27 Copynumber: 6.4 Consensus size: 27
26322189 TAAATTGTAC
*
26322199 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
26322226 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
26322252 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
26322280 GGCACTAAGTGTGCGAGATGGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * * *
26322308 GGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
26322335 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
26322362 AGCACTGAGTGT
1 AGCACTAAGTGT
26322374 ACGGGCTCAA
Statistics
Matches: 124, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 100 0.81
28 24 0.19
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:26322260 original size:54 final size:55
Alignment explanation
Indices: 26322200--26322350 Score: 198
Period size: 55 Copynumber: 2.8 Consensus size: 55
26322190 AAATTGTACA
*
26322200 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAAT-GAATATGAT-
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGGAATATG-TG
* * ** * *
26322254 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGATGGACTATGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGGAATATGTG
* *
26322309 GCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGA
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGA
26322351 GTTGATTATA
Statistics
Matches: 83, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
54 41 0.49
55 42 0.51
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (55 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGGAATATGTG
Found at i:26322315 original size:82 final size:81
Alignment explanation
Indices: 26322200--26322355 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
26322190 AAATTGTACA
* * * *
26322200 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
26322264 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
26322281 GCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-ATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
26322346 TGCGAGTTGA
65 TGCGAATTGA
26322356 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 15 0.23
82 49 0.75
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:26322367 original size:82 final size:81
Alignment explanation
Indices: 26322196--26322373 Score: 205
Period size: 82 Copynumber: 2.2 Consensus size: 81
26322186 GATTAAATTG
* * * *
26322196 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAA
26322261 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
26322277 TGCGGCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-ATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
26322341 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
26322359 TATAGCACTGAGTGT
1 TACAGCACTAAGTGT
26322374 ACGGGCTCAA
Statistics
Matches: 79, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 18 0.23
82 61 0.77
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:26330466 original size:27 final size:27
Alignment explanation
Indices: 26330435--26330609 Score: 181
Period size: 27 Copynumber: 6.4 Consensus size: 27
26330425 TAAATTGTAC
*
26330435 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
26330462 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
26330488 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
26330516 GGCACTAAGTGTGCGAGATGGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * * *
26330544 GGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
26330571 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
26330598 AGCACTGAGTGT
1 AGCACTAAGTGT
26330610 ACGGGCTCAA
Statistics
Matches: 124, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 100 0.81
28 24 0.19
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:26330496 original size:54 final size:55
Alignment explanation
Indices: 26330436--26330586 Score: 198
Period size: 55 Copynumber: 2.8 Consensus size: 55
26330426 AAATTGTACA
*
26330436 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAAT-GAATATGAT-
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGGAATATG-TG
* * ** * *
26330490 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGATGGACTATGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGGAATATGTG
* *
26330545 GCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGA
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGA
26330587 GTTGATTATA
Statistics
Matches: 83, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
54 41 0.49
55 42 0.51
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (55 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGGAATATGTG
Found at i:26330551 original size:82 final size:81
Alignment explanation
Indices: 26330436--26330591 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
26330426 AAATTGTACA
* * * *
26330436 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
26330500 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
26330517 GCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-ATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
26330582 TGCGAGTTGA
65 TGCGAATTGA
26330592 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 15 0.23
82 49 0.75
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:26330603 original size:82 final size:81
Alignment explanation
Indices: 26330432--26330609 Score: 205
Period size: 82 Copynumber: 2.2 Consensus size: 81
26330422 GATTAAATTG
* * * *
26330432 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAA
26330497 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
26330513 TGCGGCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-ATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
26330577 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
26330595 TATAGCACTGAGTGT
1 TACAGCACTAAGTGT
26330610 ACGGGCTCAA
Statistics
Matches: 79, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 18 0.23
82 61 0.77
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:26332783 original size:36 final size:37
Alignment explanation
Indices: 26332652--26332964 Score: 283
Period size: 36 Copynumber: 8.5 Consensus size: 37
26332642 AGAAAACCTG
* * * * *
26332652 ATTCAATATAATCAGTGGATAATGCTCGTTTGAGCAAGC
1 ATTCAGTAGAATCAGTAGATATTGCTCATTTGAGC-A-C
* * * * *
26332691 ATTTAGTATAATCAATGGATATTGCTCGTTTGAGCAAC
1 ATTCAGTAGAATCAGTAGATATTGCTCATTTGAGC-AC
*
26332729 AATTCAGTAGAATTAGTAGATATTGCTCATTTGAGCAC
1 -ATTCAGTAGAATCAGTAGATATTGCTCATTTGAGCAC
* * * * *
26332767 -TTCTGTAGAACCAGTAGACATGGCTCATTTTAGCAC
1 ATTCAGTAGAATCAGTAGATATTGCTCATTTGAGCAC
* * * *
26332803 ATTTAGTAGGATCAGTAGATATTACTC-GTTGAGCAC
1 ATTCAGTAGAATCAGTAGATATTGCTCATTTGAGCAC
* * * *
26332839 TTTCAGTAGAATCAATAGATATTGCTCATTTAAGTAC
1 ATTCAGTAGAATCAGTAGATATTGCTCATTTGAGCAC
* *
26332876 -TTCAGTAGAATCAGTAGACATTGCTCGTTTGAGCAC
1 ATTCAGTAGAATCAGTAGATATTGCTCATTTGAGCAC
* * * *
26332912 ATTCAGTAGGATTAGTAGATATTACTTA-TTGAGCAC
1 ATTCAGTAGAATCAGTAGATATTGCTCATTTGAGCAC
*
26332948 TTTCAGTAGAATCAGTA
1 ATTCAGTAGAATCAGTA
26332965 TTCCATTTTT
Statistics
Matches: 223, Mismatches: 47, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
36 112 0.50
37 46 0.21
38 3 0.01
39 62 0.28
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (37 bp):
ATTCAGTAGAATCAGTAGATATTGCTCATTTGAGCAC
Found at i:26332884 original size:109 final size:109
Alignment explanation
Indices: 26332675--26332961 Score: 349
Period size: 109 Copynumber: 2.6 Consensus size: 109
26332665 AGTGGATAAT
* ** * * * *
26332675 GCTCGTTTGAGCAAGCATTTAGTATAATCAATGGATATTGCTCGTTTGAGCAACAATTCAGTAGA
1 GCTCATTTGAGC-A-CATTTAGTAGGATCAGTAGATATTACTCG-TTGAGC-AC-TTTCAGTAGA
* * * *
26332740 ATTAGTAGATATTGCTCATTTGAGCACTTCTGTAGAACCAGTAGACATG
61 ATCAATAGATATTGCTCATTTAAGCACTTCAGTAGAACCAGTAGACATG
*
26332789 GCTCATTTTAGCACATTTAGTAGGATCAGTAGATATTACTCGTTGAGCACTTTCAGTAGAATCAA
1 GCTCATTTGAGCACATTTAGTAGGATCAGTAGATATTACTCGTTGAGCACTTTCAGTAGAATCAA
* * *
26332854 TAGATATTGCTCATTTAAGTACTTCAGTAGAATCAGTAGACATT
66 TAGATATTGCTCATTTAAGCACTTCAGTAGAACCAGTAGACATG
* * * **
26332898 GCTCGTTTGAGCACATTCAGTAGGATTAGTAGATATTACTTATTGAGCACTTTCAGTAGAATCA
1 GCTCATTTGAGCACATTTAGTAGGATCAGTAGATATTACTCGTTGAGCACTTTCAGTAGAATCA
26332962 GTATTCCATT
Statistics
Matches: 152, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
109 109 0.72
110 2 0.01
111 6 0.04
112 24 0.16
113 1 0.01
114 10 0.07
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.34
Consensus pattern (109 bp):
GCTCATTTGAGCACATTTAGTAGGATCAGTAGATATTACTCGTTGAGCACTTTCAGTAGAATCAA
TAGATATTGCTCATTTAAGCACTTCAGTAGAACCAGTAGACATG
Found at i:26332931 original size:73 final size:73
Alignment explanation
Indices: 26332652--26332964 Score: 281
Period size: 73 Copynumber: 4.2 Consensus size: 73
26332642 AGAAAACCTG
* * * * * * * *
26332652 ATTCAATATAATCAGTGGATAATGCTCGTTTGAGCAAGCATTTAGTATAATCAATGGATATTGCT
1 ATTCAGTAGAATCAGTAGATATTGCTCGTTTGAGC-A-C-TTCAGTAGAATCAGTAGATATTGCT
* *
26332717 CGTTTGAGCAAC
63 CATTTAAGC-AC
* * * * * *
26332729 AATTCAGTAGAATTAGTAGATATTGCTCATTTGAGCACTTCTGTAGAACCAGTAGACATGGCTCA
1 -ATTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTCAGTAGAATCAGTAGATATTGCTCA
*
26332794 TTTTAGCAC
65 TTTAAGCAC
* * * *
26332803 ATTTAGTAGGATCAGTAGATATTACTCG-TTGAGCACTTTCAGTAGAATCAATAGATATTGCTCA
1 ATTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCAC-TTCAGTAGAATCAGTAGATATTGCTCA
*
26332867 TTTAAGTAC
65 TTTAAGCAC
* * * * *
26332876 -TTCAGTAGAATCAGTAGACATTGCTCGTTTGAGCACATTCAGTAGGATTAGTAGATATTACTTA
1 ATTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCAC-TTCAGTAGAATCAGTAGATATTGCTCA
*
26332940 -TTGAGCAC
65 TTTAAGCAC
*
26332948 TTTCAGTAGAATCAGTA
1 ATTCAGTAGAATCAGTA
26332965 TTCCATTTTT
Statistics
Matches: 192, Mismatches: 40, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
72 37 0.19
73 98 0.51
74 2 0.01
75 24 0.12
76 1 0.01
77 1 0.01
78 29 0.15
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (73 bp):
ATTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTCAGTAGAATCAGTAGATATTGCTCAT
TTAAGCAC
Found at i:26336487 original size:32 final size:33
Alignment explanation
Indices: 26336425--26336567 Score: 191
Period size: 33 Copynumber: 4.4 Consensus size: 33
26336415 TACTCTCTAT
* * *
26336425 TTGGTGTGCTAGTTGGATTAGCTCTTATGAGCA
1 TTGGTGTGATGGTTGGTTTAGCTCTTATGAGCA
*
26336458 TTGGTGCGATGGTTGGTTTA-CTCTTATGAGCA
1 TTGGTGTGATGGTTGGTTTAGCTCTTATGAGCA
*
26336490 TTGGTGTGATGGTTCGTTTCA-CTCTTATGAGCA
1 TTGGTGTGATGGTTGGTTT-AGCTCTTATGAGCA
*
26336523 TTGGTGTGATGGTTGGGTTAGCTCTTATGAGCA
1 TTGGTGTGATGGTTGGTTTAGCTCTTATGAGCA
**
26336556 TTTTTGTGATGG
1 TTGGTGTGATGG
26336568 ATGGATTGGA
Statistics
Matches: 98, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
32 30 0.31
33 68 0.69
ACGTcount: A:0.15, C:0.11, G:0.31, T:0.42
Consensus pattern (33 bp):
TTGGTGTGATGGTTGGTTTAGCTCTTATGAGCA
Found at i:26347312 original size:23 final size:24
Alignment explanation
Indices: 26347277--26347384 Score: 91
Period size: 23 Copynumber: 4.7 Consensus size: 24
26347267 TTGATTAGTA
* *
26347277 GTAGCT-TCTGCTACATTTTAATG
1 GTAGCTATCAGCTACATTTCAATG
* * *
26347300 GTAGCTAT-AGCTACATATCAGTT
1 GTAGCTATCAGCTACATTTCAATG
26347323 GTAGCT-TCAGCTACATTTCAATG
1 GTAGCTATCAGCTACATTTCAATG
* * * *
26347346 GTAGCTA-CGGCTACGTATCAGTG
1 GTAGCTATCAGCTACATTTCAATG
*
26347369 GTAGC-ATCGGCTACAT
1 GTAGCTATCAGCTACAT
26347385 ATTAGTGTGG
Statistics
Matches: 68, Mismatches: 13, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
22 2 0.03
23 65 0.96
24 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.33
Consensus pattern (24 bp):
GTAGCTATCAGCTACATTTCAATG
Found at i:26347330 original size:46 final size:46
Alignment explanation
Indices: 26347277--26347384 Score: 144
Period size: 46 Copynumber: 2.3 Consensus size: 46
26347267 TTGATTAGTA
* * * *
26347277 GTAGCTTCTGCTACATTTTAATGGTAGCTATAGCTACATATCAGTT
1 GTAGCTTCAGCTACATTTCAATGGTAGCTACAGCTACATATCAGTG
* *
26347323 GTAGCTTCAGCTACATTTCAATGGTAGCTACGGCTACGTATCAGTG
1 GTAGCTTCAGCTACATTTCAATGGTAGCTACAGCTACATATCAGTG
* *
26347369 GTAGCATCGGCTACAT
1 GTAGCTTCAGCTACAT
26347385 ATTAGTGTGG
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 54 1.00
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.33
Consensus pattern (46 bp):
GTAGCTTCAGCTACATTTCAATGGTAGCTACAGCTACATATCAGTG
Found at i:26347391 original size:23 final size:23
Alignment explanation
Indices: 26347270--26347391 Score: 79
Period size: 23 Copynumber: 5.3 Consensus size: 23
26347260 ATTGTTATTG
* * *
26347270 ATTAGTAGTAGCTTCTGCTACAT
1 ATTAGTGGTAGCATCAGCTACAT
* *
26347293 TTTAATGGTAGCTAT-AGCTACAT
1 ATTAGTGGTAGC-ATCAGCTACAT
* * *
26347316 ATCAGTTGTAGCTTCAGCTACAT
1 ATTAGTGGTAGCATCAGCTACAT
* * *
26347339 -TTCAATGGTAGC-TACGGCTACGT
1 ATT-AGTGGTAGCAT-CAGCTACAT
* *
26347362 ATCAGTGGTAGCATCGGCTACAT
1 ATTAGTGGTAGCATCAGCTACAT
26347385 ATTAGTG
1 ATTAGTG
26347392 TGGCACTTAT
Statistics
Matches: 74, Mismatches: 19, Indels: 12
0.70 0.18 0.11
Matches are distributed among these distances:
22 3 0.04
23 68 0.92
24 3 0.04
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.34
Consensus pattern (23 bp):
ATTAGTGGTAGCATCAGCTACAT
Found at i:26354198 original size:33 final size:33
Alignment explanation
Indices: 26354152--26354303 Score: 180
Period size: 33 Copynumber: 4.5 Consensus size: 33
26354142 TACTTTCTAT
*
26354152 TTGGTGTGCTGGTTGGATTAGCTCTTATGAGCA
1 TTGGTGTGATGGTTGGATTAGCTCTTATGAGCA
* * *
26354185 TTAGTGTGATGGTTGGTTTAGCTCTTATAAGCA
1 TTGGTGTGATGGTTGGATTAGCTCTTATGAGCA
*
26354218 TTGGTGTGATGGTTGGATTAGCTCTTATGAGTA
1 TTGGTGTGATGGTTGGATTAGCTCTTATGAGCA
** * *
26354251 TTGGTGTGATGAATGGATTGGCTC-AAGTGAGCA
1 TTGGTGTGATGGTTGGATTAGCTCTTA-TGAGCA
*
26354284 TCTGGTGTGTTTGGTTGGAT
1 T-TGGTGTG-ATGGTTGGAT
26354304 GGATGATGTA
Statistics
Matches: 100, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
32 1 0.01
33 85 0.85
34 7 0.07
35 7 0.07
ACGTcount: A:0.18, C:0.09, G:0.34, T:0.40
Consensus pattern (33 bp):
TTGGTGTGATGGTTGGATTAGCTCTTATGAGCA
Found at i:26365790 original size:18 final size:19
Alignment explanation
Indices: 26365767--26365807 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
26365757 TTCTTGTCGA
26365767 AAAATAATTAAA-TATTAT
1 AAAATAATTAAATTATTAT
*
26365785 AAAATAATTAAATTATTTT
1 AAAATAATTAAATTATTAT
26365804 AAAA
1 AAAA
26365808 ATATGAACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
AAAATAATTAAATTATTAT
Found at i:26367787 original size:20 final size:20
Alignment explanation
Indices: 26367762--26367800 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26367752 CTTGTAGTTC
* *
26367762 AAAATTTTCAACTTTTTCCT
1 AAAATTTCCAAATTTTTCCT
26367782 AAAATTTCCAAATTTTTCC
1 AAAATTTCCAAATTTTTCC
26367801 AATTTATTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.21, G:0.00, T:0.46
Consensus pattern (20 bp):
AAAATTTCCAAATTTTTCCT
Found at i:26370835 original size:36 final size:37
Alignment explanation
Indices: 26370705--26370908 Score: 209
Period size: 39 Copynumber: 5.5 Consensus size: 37
26370695 AGAAAATCTT
* * *
26370705 ATTCAGTATAATCAGT-GAATAATGCTCGTTTGAGTAAGC
1 ATTCAGTAGAATCAGTAG-ATATTGCTCGTTTGAG-CA-C
* * *
26370744 ATTCAGTATAATCAGTGGATATTGCTTGTTTGAGCAAC
1 ATTCAGTAGAATCAGTAGATATTGCTCGTTTGAGC-AC
*
26370782 TATTCGGTAGAATCAGTAGATACTT-CTCGTTTGAGCAC
1 -ATTCAGTAGAATCAGTAGATA-TTGCTCGTTTGAGCAC
*
26370820 -TTCAGTAGAATCAGTAGACATTGCTCGTTTGAGCAC
1 ATTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCAC
* * *
26370856 ATTCAGTAGGATCAATAGATATTGCTTG-TTGAGCAC
1 ATTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCAC
* *
26370892 TTTCAGTAGAATTAGTA
1 ATTCAGTAGAATCAGTA
26370909 TTCCATTTGT
Statistics
Matches: 142, Mismatches: 17, Indels: 15
0.82 0.10 0.09
Matches are distributed among these distances:
35 2 0.01
36 52 0.37
37 23 0.16
38 3 0.02
39 59 0.42
40 3 0.02
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (37 bp):
ATTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCAC
Found at i:26370850 original size:75 final size:72
Alignment explanation
Indices: 26370741--26370908 Score: 196
Period size: 73 Copynumber: 2.3 Consensus size: 72
26370731 CGTTTGAGTA
* * * * * *
26370741 AGCA-TTCAGTATAATCAGTGGATATTGCTTGTTTGAGCAACTATTCGGTAGAATCAGTAGATAC
1 AGCACTTCAGTAGAATCAGTAGACATTGCTCGTTTGAGC-AC-ATTCAGTAGAATCAATAGATA-
26370805 TT-CTCGTTTG
63 TTGCTCG-TTG
*
26370815 AGCACTTCAGTAGAATCAGTAGACATTGCTCGTTTGAGCACATTCAGTAGGATCAATAGATATTG
1 AGCACTTCAGTAGAATCAGTAGACATTGCTCGTTTGAGCACATTCAGTAGAATCAATAGATATTG
*
26370880 CTTGTTG
66 CTCGTTG
*
26370887 AGCACTTTCAGTAGAATTAGTA
1 AGCAC-TTCAGTAGAATCAGTA
26370909 TTCCATTTGT
Statistics
Matches: 82, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
72 10 0.12
73 36 0.44
74 6 0.07
75 30 0.37
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.34
Consensus pattern (72 bp):
AGCACTTCAGTAGAATCAGTAGACATTGCTCGTTTGAGCACATTCAGTAGAATCAATAGATATTG
CTCGTTG
Found at i:26378835 original size:27 final size:27
Alignment explanation
Indices: 26378805--26378981 Score: 167
Period size: 27 Copynumber: 6.5 Consensus size: 27
26378795 AAATTGTACA
* *
26378805 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTG
** *
26378832 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGATTTGACTATG-TG
* * *
26378859 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTG
* * *
26378886 GCACTAAGAGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTG
* *
26378914 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGATTTGACTATGTG
* * * *
26378941 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGATTTGACTATGTG
*
26378968 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
26378982 GGCTCAATAT
Statistics
Matches: 123, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 101 0.82
28 22 0.18
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTG
Found at i:26378918 original size:82 final size:81
Alignment explanation
Indices: 26378805--26378960 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
26378795 AAATTGTACA
* * * *
26378805 GCACTAAGGGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGAGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
26378869 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
26378886 GCACTAAGAGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGAGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
26378951 TGCGAGTTGA
65 TGCGAATTGA
26378961 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.77
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGAGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:26386878 original size:27 final size:27
Alignment explanation
Indices: 26386848--26387024 Score: 167
Period size: 27 Copynumber: 6.5 Consensus size: 27
26386838 AAATTGTACA
* *
26386848 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTG
** *
26386875 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGATTTGACTATG-TG
* * *
26386902 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTG
* * *
26386929 GCACTAAGAGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTG
* *
26386957 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGATTTGACTATGTG
* * * *
26386984 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGATTTGACTATGTG
*
26387011 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
26387025 GGCTCAATAT
Statistics
Matches: 123, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 101 0.82
28 22 0.18
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTG
Found at i:26386961 original size:82 final size:81
Alignment explanation
Indices: 26386848--26387003 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
26386838 AAATTGTACA
* * * *
26386848 GCACTAAGGGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGAGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
26386912 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
26386929 GCACTAAGAGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGAGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
26386994 TGCGAGTTGA
65 TGCGAATTGA
26387004 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.77
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGAGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:26412492 original size:16 final size:16
Alignment explanation
Indices: 26412471--26412509 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
26412461 TTTTTCTTGT
*
26412471 TTTCTTTCTTCACTCG
1 TTTCTTTCTTCACTCA
26412487 TTTCTTTCTTCACTCA
1 TTTCTTTCTTCACTCA
26412503 TTTCTTT
1 TTTCTTT
26412510 TGCAAAATCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.08, C:0.28, G:0.03, T:0.62
Consensus pattern (16 bp):
TTTCTTTCTTCACTCA
Found at i:26413746 original size:12 final size:12
Alignment explanation
Indices: 26413729--26413759 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
26413719 CAAATTTTTT
*
26413729 TTTTTTTCACAA
1 TTTTTTTCAAAA
26413741 TTTTTTTCAAAA
1 TTTTTTTCAAAA
26413753 TTTTTTT
1 TTTTTTT
26413760 AATTTCGGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.23, C:0.10, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTTTTTCAAAA
Found at i:26430267 original size:27 final size:27
Alignment explanation
Indices: 26430234--26430378 Score: 215
Period size: 27 Copynumber: 5.4 Consensus size: 27
26430224 TAAATTGTGC
*
26430234 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
26430261 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
26430289 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
26430316 AGCACTAAGTGTGCGAGTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
* *
26430343 AGCACTAA--GTGCGAGTT-ATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
26430367 AGCACTGAGTGT
1 AGCACTAAGTGT
26430379 CGGACTTAAT
Statistics
Matches: 111, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
24 13 0.12
25 9 0.08
26 2 0.02
27 60 0.54
28 27 0.24
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:26430298 original size:55 final size:54
Alignment explanation
Indices: 26430234--26430353 Score: 213
Period size: 55 Copynumber: 2.2 Consensus size: 54
26430224 TAAATTGTGC
26430234 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGT
* *
26430289 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTGATTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
26430343 AGCACTAAGTG
1 AGCACTAAGTG
26430354 CGAGTTATTA
Statistics
Matches: 63, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
54 20 0.32
55 43 0.68
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (54 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
Done.