Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53248092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1300000 characters in sequence are not A, C, G, or T
File 84 of 175
Found at i:26434014 original size:19 final size:20
Alignment explanation
Indices: 26433982--26434019 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
26433972 GCAAGCTGAT
26433982 TTAGCTCAATTTCAGCTCCC
1 TTAGCTCAATTTCAGCTCCC
26434002 TTAGCTC-ATTTCAGCTCC
1 TTAGCTCAATTTCAGCTCC
26434020 AACCAGCTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.18, C:0.34, G:0.11, T:0.37
Consensus pattern (20 bp):
TTAGCTCAATTTCAGCTCCC
Found at i:26452340 original size:16 final size:16
Alignment explanation
Indices: 26452319--26452357 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
26452309 CTTTTCTTGT
*
26452319 TTTCTTTCTTCACTCG
1 TTTCTTTCTTCACTCA
26452335 TTTCTTTCTTCACTCA
1 TTTCTTTCTTCACTCA
26452351 TTTCTTT
1 TTTCTTT
26452358 TGCAAAATCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.08, C:0.28, G:0.03, T:0.62
Consensus pattern (16 bp):
TTTCTTTCTTCACTCA
Found at i:26453593 original size:12 final size:12
Alignment explanation
Indices: 26453576--26453605 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
26453566 AAATTTTTTT
*
26453576 TTTTTTTCACAA
1 TTTTTTTCAAAA
26453588 TTTTTTTCAAAA
1 TTTTTTTCAAAA
26453600 TTTTTT
1 TTTTTT
26453606 AATTTCGGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.10, G:0.00, T:0.67
Consensus pattern (12 bp):
TTTTTTTCAAAA
Found at i:26458323 original size:20 final size:19
Alignment explanation
Indices: 26458295--26458344 Score: 66
Period size: 18 Copynumber: 2.6 Consensus size: 19
26458285 CCACTCTCAA
26458295 TCTCTTTTTTCTCTTTTTCAT
1 TCTC-TTTTTCT-TTTTTCAT
*
26458316 TCTCTTTTTCTTTTTTGAT
1 TCTCTTTTTCTTTTTTCAT
26458335 T-TCTTTTTCT
1 TCTCTTTTTCT
26458345 GTCTTTCTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 9 0.32
19 8 0.29
20 7 0.25
21 4 0.14
ACGTcount: A:0.04, C:0.20, G:0.02, T:0.74
Consensus pattern (19 bp):
TCTCTTTTTCTTTTTTCAT
Found at i:26458329 original size:18 final size:17
Alignment explanation
Indices: 26458301--26458344 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 17
26458291 TCAATCTCTT
26458301 TTTTCTCTTTTTCATTCTC
1 TTTT-TCTTTTTCATT-TC
*
26458320 TTTTTCTTTTTTGATTTC
1 TTTTTC-TTTTTCATTTC
26458338 TTTTTCT
1 TTTTTCT
26458345 GTCTTTCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 1 0.04
18 10 0.43
19 12 0.52
ACGTcount: A:0.05, C:0.18, G:0.02, T:0.75
Consensus pattern (17 bp):
TTTTTCTTTTTCATTTC
Found at i:26460854 original size:26 final size:26
Alignment explanation
Indices: 26460811--26460860 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
26460801 GCTAAATCTT
26460811 TTTTTAAATATTTATTGGATTTTTTA
1 TTTTTAAATATTTATTGGATTTTTTA
* * * *
26460837 TTTTTCAATTTTTTTTGGCTTTTT
1 TTTTTAAATATTTATTGGATTTTT
26460861 CGACTGAATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.18, C:0.04, G:0.08, T:0.70
Consensus pattern (26 bp):
TTTTTAAATATTTATTGGATTTTTTA
Found at i:26464785 original size:12 final size:12
Alignment explanation
Indices: 26464768--26464792 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26464758 ACCCTTATAC
26464768 ATTACACATTGA
1 ATTACACATTGA
26464780 ATTACACATTGA
1 ATTACACATTGA
26464792 A
1 A
26464793 ATCAGATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (12 bp):
ATTACACATTGA
Found at i:26465855 original size:23 final size:24
Alignment explanation
Indices: 26465829--26465891 Score: 92
Period size: 23 Copynumber: 2.7 Consensus size: 24
26465819 AGATGGAGTT
26465829 GGTTTTGGTACGAAATGGTATGG-
1 GGTTTTGGTACGAAATGGTATGGA
*
26465852 GGTTTTGGTACGAAATTGTATGGA
1 GGTTTTGGTACGAAATGGTATGGA
**
26465876 ACTTTTGGTACGAAAT
1 GGTTTTGGTACGAAAT
26465892 AAACCAAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
23 22 0.61
24 14 0.39
ACGTcount: A:0.25, C:0.06, G:0.32, T:0.37
Consensus pattern (24 bp):
GGTTTTGGTACGAAATGGTATGGA
Found at i:26476675 original size:22 final size:22
Alignment explanation
Indices: 26476649--26476694 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
26476639 CTATGCTTAA
26476649 TAACTTAATCAATTGAATCACT
1 TAACTTAATCAATTGAATCACT
26476671 TAACTTAATCAATTGAATCACT
1 TAACTTAATCAATTGAATCACT
26476693 TA
1 TA
26476695 GTATATCACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.41, C:0.17, G:0.04, T:0.37
Consensus pattern (22 bp):
TAACTTAATCAATTGAATCACT
Found at i:26478174 original size:22 final size:21
Alignment explanation
Indices: 26478143--26478185 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
26478133 GCGATCATTT
26478143 GAAAAAGTAAAATTCAAGATA
1 GAAAAAGTAAAATTCAAGATA
* *
26478164 GAAAAACGTAAACTTTAAGATA
1 GAAAAA-GTAAAATTCAAGATA
26478186 ATATGTGATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.58, C:0.07, G:0.14, T:0.21
Consensus pattern (21 bp):
GAAAAAGTAAAATTCAAGATA
Found at i:26484462 original size:16 final size:16
Alignment explanation
Indices: 26484437--26484480 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
26484427 AGAACGTGAA
26484437 AAAG-AAAATAAAAAT
1 AAAGAAAAATAAAAAT
* *
26484452 AAATAAAAATAAACAT
1 AAAGAAAAATAAAAAT
*
26484468 TAAGAAAAATAAA
1 AAAGAAAAATAAA
26484481 TAATTATTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
15 3 0.12
16 21 0.88
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.16
Consensus pattern (16 bp):
AAAGAAAAATAAAAAT
Found at i:26485662 original size:38 final size:38
Alignment explanation
Indices: 26485446--26485664 Score: 278
Period size: 38 Copynumber: 5.8 Consensus size: 38
26485436 TTATTAACGT
*
26485446 TTTGTGCCTAGCAGGCTTAGTGCCAGTGTTATTCAAGC
1 TTTGTGCCTAGCAGGCTTAGTGCCGGTGTTATTCAAGC
* * *
26485484 TTTGTGCCTAGCAGGCTTAGTACCAGTGTTATTCAAGT
1 TTTGTGCCTAGCAGGCTTAGTGCCGGTGTTATTCAAGC
* * *
26485522 TTTGTGCCTAGCAGGCTTTGTGCCTGTGTTATTCAGGC
1 TTTGTGCCTAGCAGGCTTAGTGCCGGTGTTATTCAAGC
* * *
26485560 TTTGTGCCTAACAGGCTTAGT-CTCGATGTTATTCAGGC
1 TTTGTGCCTAGCAGGCTTAGTGC-CGGTGTTATTCAAGC
* *
26485598 TTTGTGCCTAGCAAGCTTAATGCCGGTGTTATTCAAGC
1 TTTGTGCCTAGCAGGCTTAGTGCCGGTGTTATTCAAGC
* * * *
26485636 TTAGTGCCTAGTAGGCTTATTACCGGTGT
1 TTTGTGCCTAGCAGGCTTAGTGCCGGTGT
26485665 AATAAATGTT
Statistics
Matches: 158, Mismatches: 21, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
37 1 0.01
38 156 0.99
39 1 0.01
ACGTcount: A:0.18, C:0.20, G:0.26, T:0.37
Consensus pattern (38 bp):
TTTGTGCCTAGCAGGCTTAGTGCCGGTGTTATTCAAGC
Found at i:26489332 original size:20 final size:20
Alignment explanation
Indices: 26489306--26489354 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
26489296 TTAATACGCC
*
26489306 TTGTCTTAGCTGAATT-AAT
1 TTGTCTTAGCTCAATTAAAT
*
26489325 TCTGTCTTAGTTCAATTAAAT
1 T-TGTCTTAGCTCAATTAAAT
26489346 TTGTCTTAG
1 TTGTCTTAG
26489355 ATTATTACAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 1 0.04
20 21 0.81
21 4 0.15
ACGTcount: A:0.24, C:0.12, G:0.14, T:0.49
Consensus pattern (20 bp):
TTGTCTTAGCTCAATTAAAT
Found at i:26491232 original size:23 final size:23
Alignment explanation
Indices: 26491198--26491248 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
26491188 GACCTATAAG
*
26491198 TGTAATATCCTGAAAATTACTAC
1 TGTAATACCCTGAAAATTACTAC
26491221 TGTAATACCCTGAAAATTACTAC
1 TGTAATACCCTGAAAATTACTAC
*
26491244 AGTAA
1 TGTAA
26491249 GAAAGTAAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (23 bp):
TGTAATACCCTGAAAATTACTAC
Found at i:26506549 original size:20 final size:20
Alignment explanation
Indices: 26506523--26506571 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
26506513 TTAATATGCC
*
26506523 TTGTCTTAGCTGAATT-AAT
1 TTGTCTTAGCTCAATTAAAT
*
26506542 TGTGTCTTAGTTCAATTAAAT
1 T-TGTCTTAGCTCAATTAAAT
26506563 TTGTCTTAG
1 TTGTCTTAG
26506572 ATTATTACAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 1 0.04
20 21 0.81
21 4 0.15
ACGTcount: A:0.24, C:0.10, G:0.16, T:0.49
Consensus pattern (20 bp):
TTGTCTTAGCTCAATTAAAT
Found at i:26511910 original size:9 final size:9
Alignment explanation
Indices: 26511898--26511941 Score: 74
Period size: 9 Copynumber: 5.1 Consensus size: 9
26511888 ATTATCAAAT
26511898 TATTAATTG
1 TATTAATTG
26511907 TATTAATTG
1 TATTAATTG
26511916 --TTAATTG
1 TATTAATTG
26511923 TATTAATTG
1 TATTAATTG
26511932 TATTAATTG
1 TATTAATTG
26511941 T
1 T
26511942 TGTAACAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
7 7 0.21
9 26 0.79
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (9 bp):
TATTAATTG
Found at i:26511919 original size:16 final size:16
Alignment explanation
Indices: 26511895--26511932 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
26511885 AAAATTATCA
*
26511895 AATTATTAATTGTATT
1 AATTGTTAATTGTATT
26511911 AATTGTTAATTGTATT
1 AATTGTTAATTGTATT
26511927 AATTGT
1 AATTGT
26511933 ATTAATTGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.34, C:0.00, G:0.11, T:0.55
Consensus pattern (16 bp):
AATTGTTAATTGTATT
Found at i:26513900 original size:24 final size:23
Alignment explanation
Indices: 26513871--26513915 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
26513861 GTAAAGTATT
*
26513871 AAAATAAAAAACTATTATATTTTA
1 AAAATAAAAAAATA-TATATTTTA
26513895 AAAATAAAAAAATATATATTT
1 AAAATAAAAAAATATATATTT
26513916 AATATATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (23 bp):
AAAATAAAAAAATATATATTTTA
Found at i:26520739 original size:79 final size:81
Alignment explanation
Indices: 26520603--26520787 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 81
26520593 TTGAATGATG
* * * *
26520603 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGCGCTAAGTGACCAAATCCGGACTAAGATCCGAACGCAAT
26520667 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
26520682 TTCCGGGCTAAG-CCCGAAGGCATTTGCGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAACGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGCGCTAAGTGACCAAATCCGGACTAAGAT-CCGAACGCA
*
26520744 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
26520762 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26520788 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.63
80 32 0.36
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGCGCTAAGTGACCAAATCCGGACTAAGATCCGAACGCAAT
TGTGCGAGATACTATA
Found at i:26520794 original size:40 final size:39
Alignment explanation
Indices: 26520604--26520787 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 39
26520594 TGAATGATGT
* * * *
26520604 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * *
26520644 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
26520684 CCGGGCTAAG-CCCGAAGGCATTTGCGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
26520722 TCCGGGTTAAGTCCCGAACGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
26520763 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
26520788 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 17, Indels: 14
0.79 0.11 0.09
Matches are distributed among these distances:
39 34 0.28
40 76 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26520818 original size:79 final size:79
Alignment explanation
Indices: 26520650--26520818 Score: 184
Period size: 79 Copynumber: 2.1 Consensus size: 79
26520640 ATATCCGGAC
* * * * **
26520650 TAAGATCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGCGCGAGT
1 TAAGTTCCGAACGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGT
26520715 TACTAAATCCGGGT
66 TACTAAATCCGGGT
* * *
26520729 TAAGTCCCGAACGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGA
1 TAAGTTCCGAACGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGA
*
26520793 G-TAGCTATATCC-GGT
64 GTTA-CTAAATCCGGGT
26520808 TCAA-TTCCGAA
1 T-AAGTTCCGAA
26520819 GGTACGTGAT
Statistics
Matches: 75, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
78 2 0.03
79 46 0.61
80 27 0.36
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (79 bp):
TAAGTTCCGAACGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGT
TACTAAATCCGGGT
Found at i:26522279 original size:79 final size:81
Alignment explanation
Indices: 26522143--26522327 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 81
26522133 TTGAATGATG
* * * *
26522143 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGCGCTAAGTGACCAAATCCGGACTAAGATCCGAACGCAAT
26522207 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
26522222 TTCCGGGCTAAG-CCCGAAGGCATTTGCGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAACGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGCGCTAAGTGACCAAATCCGGACTAAGAT-CCGAACGCA
*
26522284 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
26522302 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26522328 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.63
80 32 0.36
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGCGCTAAGTGACCAAATCCGGACTAAGATCCGAACGCAAT
TGTGCGAGATACTATA
Found at i:26522334 original size:40 final size:39
Alignment explanation
Indices: 26522144--26522327 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 39
26522134 TGAATGATGT
* * * *
26522144 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * *
26522184 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
26522224 CCGGGCTAAG-CCCGAAGGCATTTGCGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
26522262 TCCGGGTTAAGTCCCGAACGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
26522303 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
26522328 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 17, Indels: 14
0.79 0.11 0.09
Matches are distributed among these distances:
39 34 0.28
40 76 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26522358 original size:79 final size:79
Alignment explanation
Indices: 26522190--26522358 Score: 184
Period size: 79 Copynumber: 2.1 Consensus size: 79
26522180 ATATCCGGAC
* * * * **
26522190 TAAGATCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGCGCGAGT
1 TAAGTTCCGAACGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGT
26522255 TACTAAATCCGGGT
66 TACTAAATCCGGGT
* * *
26522269 TAAGTCCCGAACGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGA
1 TAAGTTCCGAACGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGA
*
26522333 G-TAGCTATATCC-GGT
64 GTTA-CTAAATCCGGGT
26522348 TCAA-TTCCGAA
1 T-AAGTTCCGAA
26522359 GGTACGTGAT
Statistics
Matches: 75, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
78 2 0.03
79 46 0.61
80 27 0.36
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (79 bp):
TAAGTTCCGAACGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGT
TACTAAATCCGGGT
Found at i:26530245 original size:79 final size:81
Alignment explanation
Indices: 26530109--26530293 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
26530099 TTGAATGATG
* * *
26530109 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGCGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
26530173 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
26530188 TTCCGGGCTAAG-CCCGAAGGCATTTGCGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGCGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
26530250 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
26530268 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26530294 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 32 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGCGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:26530300 original size:40 final size:39
Alignment explanation
Indices: 26530110--26530293 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
26530100 TGAATGATGT
* * * *
26530110 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * *
26530150 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
26530190 CCGGGCTAAG-CCCGAAGGCATTTGCGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
26530228 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
26530269 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
26530294 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26532981 original size:16 final size:15
Alignment explanation
Indices: 26532938--26532995 Score: 64
Period size: 16 Copynumber: 3.8 Consensus size: 15
26532928 AAGAGACTGT
26532938 AGAAAAAGAAAAAGA
1 AGAAAAAGAAAAAGA
* *
26532953 ACAAGAA-AAAAAGA
1 AGAAAAAGAAAAAGA
26532967 GAGAAAAAGAAAAAGAA
1 -AGAAAAAGAAAAAG-A
*
26532984 AGGAAAAGAAAA
1 AGAAAAAGAAAA
26532996 TCGAAAAAAG
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
14 7 0.20
15 10 0.29
16 17 0.49
17 1 0.03
ACGTcount: A:0.78, C:0.02, G:0.21, T:0.00
Consensus pattern (15 bp):
AGAAAAAGAAAAAGA
Found at i:26533010 original size:6 final size:6
Alignment explanation
Indices: 26532938--26532984 Score: 60
Period size: 6 Copynumber: 7.8 Consensus size: 6
26532928 AAGAGACTGT
* *
26532938 AGAAAA AGAAAA AGAACA AGAAAA A-AAGAG AGAAAA AGAAAA AGAAA
1 AGAAAA AGAAAA AGAAAA AGAAAA AGAA-AA AGAAAA AGAAAA AGAAA
26532985 GGAAAAGAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
5 2 0.06
6 31 0.89
7 2 0.06
ACGTcount: A:0.79, C:0.02, G:0.19, T:0.00
Consensus pattern (6 bp):
AGAAAA
Found at i:26538766 original size:50 final size:50
Alignment explanation
Indices: 26538686--26538880 Score: 178
Period size: 50 Copynumber: 3.9 Consensus size: 50
26538676 GTGAAGTTGC
** *
26538686 TAGGTCATGTGTGTAGTACTATGTCCAGGCTACTATGTGTACCAGAATG-A
1 TAGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACC-GAATGAA
* * * **
26538736 TAGGTCGCATGTGTAGTACTATGTGTAGGCTACTATGCGTACCGAATAGCT
1 TAGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAAT-GAA
* * ** * * * * *
26538787 TTGATCATGTGTGTAGTACTATGTGCAGGCTAGTACGTGCATCG-GTGAA
1 TAGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAATGAA
* *
26538836 AATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGAACCG
1 TA-GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCG
26538881 GGTATCATTT
Statistics
Matches: 112, Mismatches: 30, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
49 5 0.04
50 74 0.66
51 33 0.29
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (50 bp):
TAGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAATGAA
Found at i:26538867 original size:101 final size:101
Alignment explanation
Indices: 26538690--26538873 Score: 255
Period size: 101 Copynumber: 1.8 Consensus size: 101
26538680 AGTTGCTAGG
* * * *
26538690 TCATGTGTGTAGTACTATGTCCAGGCTACTATGTGTACCAGAATGATAGGTCGCATGTGTAGTAC
1 TCATGTGTGTAGTACTATGTCCAGGCTACTACGTGCACCAGAATAATAGGTCACATGTGTAGTAC
*
26538755 TATGTGTAGGCTACTATGCGTACCGAATAGCTTTGA
66 TATGTGCAGGCTACTATGCGTACCGAATAGCTTTGA
* * **
26538791 TCATGTGTGTAGTACTATGTGCAGGCTAGTACGTGCATCGGTGAA-AAT-GGTCACATGTGTAGT
1 TCATGTGTGTAGTACTATGTCCAGGCTACTACGTGCA-C-CAGAATAATAGGTCACATGTGTAGT
26538854 ACTATGTGCAGGCTACTATG
64 ACTATGTGCAGGCTACTATG
26538874 TGAACCGGGT
Statistics
Matches: 72, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
101 66 0.92
102 3 0.04
103 3 0.04
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.32
Consensus pattern (101 bp):
TCATGTGTGTAGTACTATGTCCAGGCTACTACGTGCACCAGAATAATAGGTCACATGTGTAGTAC
TATGTGCAGGCTACTATGCGTACCGAATAGCTTTGA
Found at i:26546521 original size:13 final size:13
Alignment explanation
Indices: 26546491--26546534 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
26546481 AGAGAAAGAG
*
26546491 AAAAAGAGAAAAA
1 AAAAAGAGAGAAA
*
26546504 CAAAAAGAGTGAAA
1 -AAAAAGAGAGAAA
*
26546518 AAAAAGAAAGAAA
1 AAAAAGAGAGAAA
26546531 AAAA
1 AAAA
26546535 TGATGAGAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
13 15 0.58
14 11 0.42
ACGTcount: A:0.80, C:0.02, G:0.16, T:0.02
Consensus pattern (13 bp):
AAAAAGAGAGAAA
Found at i:26546589 original size:23 final size:24
Alignment explanation
Indices: 26546551--26546596 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
26546541 GAGTGATAAA
26546551 AAAAAGAGTGACAAAA-GAAAAAG
1 AAAAAGAGTGACAAAATGAAAAAG
**
26546574 AAAAAGAGTGTGAAAATGAAAAA
1 AAAAAGAGTGACAAAATGAAAAA
26546597 ACAAGTGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.67, C:0.02, G:0.22, T:0.09
Consensus pattern (24 bp):
AAAAAGAGTGACAAAATGAAAAAG
Found at i:26546596 original size:44 final size:45
Alignment explanation
Indices: 26546500--26546597 Score: 110
Period size: 46 Copynumber: 2.1 Consensus size: 45
26546490 GAAAAAGAGA
* *
26546500 AAAACAAAAAGAGTGAAAAAAAAGAAAGAAAAAAATGATGAGAGTG
1 AAAA-AAAAAGAGTGAAAAAAAAGAAAGAAAAAAATGATGAAAATG
* *
26546546 ATAAAAAAAAGAGTGACAAAAGAA-AAAGAAAAAGAGTG-TGAAAATG
1 A-AAAAAAAAGAGTGA-AAAAAAAGAAAGAAAAA-AATGATGAAAATG
26546592 AAAAAA
1 AAAAAA
26546598 CAAGTGTTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
45 5 0.11
46 28 0.62
47 12 0.27
ACGTcount: A:0.68, C:0.02, G:0.20, T:0.09
Consensus pattern (45 bp):
AAAAAAAAAGAGTGAAAAAAAAGAAAGAAAAAAATGATGAAAATG
Found at i:26562749 original size:232 final size:233
Alignment explanation
Indices: 26562328--26562792 Score: 878
Period size: 232 Copynumber: 2.0 Consensus size: 233
26562318 TAGAAAATAG
26562328 ATAGAAGGCCTATTAATAGGCATGGCCGGCCACCTTATTGAACACATTATAATTACATTGAAAAT
1 ATAGAAGGCCTATTAATAGGCATGGCCGGCCACCTTATTGAACACATTATAATTACATTGAAAAT
*
26562393 TTCAGATTTGCTTTGAGTGAAAATTCTCTTTGAGTTCTTCAAGAATTTTCTCTTGAGTTTTCTTT
66 TTCAGATTTACTTTGAGTGAAAATTCTCTTTGAGTTCTTCAAGAATTTTCTCTTGAGTTTTCTTT
*
26562458 GGAAGTAGTTTTAACAATCTCTTTGATTGTGGGAGCCATCTTAAGCCTTCTTCTTGCCATTGTTC
131 GGAAGTAGTTTTAACAATCTCTTTGATTGTGGAAGCCATCTTAAGCCTTCTTCTTGCCATTGTTC
*
26562523 TTCATTGGATGGGAGATTAGACCCGTTTGAAGGGAGTT
196 TTCATTGGAGGGGAGATTAGACCCGTTTGAAGGGAGTT
26562561 ATAGAAGGCCTATTAATAGGCATGGCCGGCCACCTTATTGAACACATTATAATTACATTGAAAAT
1 ATAGAAGGCCTATTAATAGGCATGGCCGGCCACCTTATTGAACACATTATAATTACATTGAAAAT
*
26562626 TTCAGATTTACTTTGAGTGAAAATTCTC-TTGAGTTCTTCAAGAATTTTTTCTTGAGTTTTCTTT
66 TTCAGATTTACTTTGAGTGAAAATTCTCTTTGAGTTCTTCAAGAATTTTCTCTTGAGTTTTCTTT
26562690 GGAAGTAGTTTTAACAATCTCTTTGATTGTGGAAGCCATCTTAAGCCTTCTTCTTGCCATTGTTC
131 GGAAGTAGTTTTAACAATCTCTTTGATTGTGGAAGCCATCTTAAGCCTTCTTCTTGCCATTGTTC
*
26562755 TTCATTGGAGGGGAGATTAGAGCCGTTTGAAGGGAGTT
196 TTCATTGGAGGGGAGATTAGACCCGTTTGAAGGGAGTT
26562793 GTGAAATCTT
Statistics
Matches: 227, Mismatches: 5, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
232 135 0.59
233 92 0.41
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.38
Consensus pattern (233 bp):
ATAGAAGGCCTATTAATAGGCATGGCCGGCCACCTTATTGAACACATTATAATTACATTGAAAAT
TTCAGATTTACTTTGAGTGAAAATTCTCTTTGAGTTCTTCAAGAATTTTCTCTTGAGTTTTCTTT
GGAAGTAGTTTTAACAATCTCTTTGATTGTGGAAGCCATCTTAAGCCTTCTTCTTGCCATTGTTC
TTCATTGGAGGGGAGATTAGACCCGTTTGAAGGGAGTT
Found at i:26565896 original size:20 final size:20
Alignment explanation
Indices: 26565873--26565921 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
26565863 GGGTTAAGAT
26565873 TGAGCTGAATTGAGCTCGAA
1 TGAGCTGAATTGAGCTCGAA
* * *
26565893 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAA
26565913 TGAGCTGAA
1 TGAGCTGAA
26565922 CTAAGTTAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.27, C:0.14, G:0.33, T:0.27
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAA
Found at i:26567563 original size:6 final size:6
Alignment explanation
Indices: 26567552--26567600 Score: 55
Period size: 6 Copynumber: 8.0 Consensus size: 6
26567542 AAGAGACTGT
* *
26567552 AGAAAA AGAAAA AGAATA AGAAAA A-AAAGA GTGAAAA AGAAAA AGAAAA
1 AGAAAA AGAAAA AGAAAA AGAAAA AGAAA-A -AGAAAA AGAAAA AGAAAA
26567601 TAAAATAAAG
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
5 3 0.08
6 29 0.81
7 1 0.03
8 3 0.08
ACGTcount: A:0.78, C:0.00, G:0.18, T:0.04
Consensus pattern (6 bp):
AGAAAA
Found at i:26574365 original size:25 final size:25
Alignment explanation
Indices: 26574337--26574384 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
26574327 TGTTTAAGTG
26574337 AAGAATTCTC-CTTGAGCTTTTCTCC
1 AAGAATTCTCTCTTGAG-TTTTCTCC
26574362 AAGAATTCTCTCTTGAGTTTTCT
1 AAGAATTCTCTCTTGAGTTTTCT
26574385 TTAGAAGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.21, C:0.23, G:0.12, T:0.44
Consensus pattern (25 bp):
AAGAATTCTCTCTTGAGTTTTCTCC
Found at i:26589202 original size:21 final size:19
Alignment explanation
Indices: 26589176--26589223 Score: 62
Period size: 21 Copynumber: 2.5 Consensus size: 19
26589166 CCACTCTCAA
26589176 TCTCTTTTTGCTCTTTTTCAT
1 TCTCTTTTTG-T-TTTTTCAT
*
26589197 TCTCTTTTTGTTTTTTGAT
1 TCTCTTTTTGTTTTTTCAT
26589216 T-TCTTTTT
1 TCTCTTTTT
26589224 TTCTTTATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 7 0.27
19 8 0.31
20 1 0.04
21 10 0.38
ACGTcount: A:0.04, C:0.17, G:0.06, T:0.73
Consensus pattern (19 bp):
TCTCTTTTTGTTTTTTCAT
Found at i:26589943 original size:15 final size:15
Alignment explanation
Indices: 26589923--26589962 Score: 71
Period size: 15 Copynumber: 2.7 Consensus size: 15
26589913 GTAAAGGAAG
*
26589923 AATGAAAAGCAAACA
1 AATGAAAACCAAACA
26589938 AATGAAAACCAAACA
1 AATGAAAACCAAACA
26589953 AATGAAAACC
1 AATGAAAACC
26589963 TACAGCTAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.65, C:0.17, G:0.10, T:0.07
Consensus pattern (15 bp):
AATGAAAACCAAACA
Found at i:26596381 original size:33 final size:34
Alignment explanation
Indices: 26596330--26596404 Score: 116
Period size: 33 Copynumber: 2.2 Consensus size: 34
26596320 AGATTTAAAC
26596330 AAATTAATTACTAACACTTATTTAAGCTGAAATA
1 AAATTAATTACTAACACTTATTTAAGCTGAAATA
* *
26596364 AAATTAATT-CTAACACTTATTTGAGCTGAACTA
1 AAATTAATTACTAACACTTATTTAAGCTGAAATA
*
26596397 AATTTAAT
1 AAATTAAT
26596405 AAACTAACTC
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
33 29 0.76
34 9 0.24
ACGTcount: A:0.44, C:0.12, G:0.07, T:0.37
Consensus pattern (34 bp):
AAATTAATTACTAACACTTATTTAAGCTGAAATA
Found at i:26598193 original size:17 final size:17
Alignment explanation
Indices: 26598173--26598207 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
26598163 CTCTTTTTGC
26598173 TCTTTTTC-ATTCTCTTT
1 TCTTTTTCGATT-TCTTT
26598190 TCTTTTTCGATTTCTTT
1 TCTTTTTCGATTTCTTT
26598207 T
1 T
26598208 TCTATCTTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 14 0.82
18 3 0.18
ACGTcount: A:0.06, C:0.20, G:0.03, T:0.71
Consensus pattern (17 bp):
TCTTTTTCGATTTCTTT
Found at i:26606594 original size:24 final size:24
Alignment explanation
Indices: 26606562--26606608 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
26606552 ATTGGGTATT
*
26606562 GGTACGAAATGGTATGAGATTTGC
1 GGTACGAAATGGTACGAGATTTGC
*
26606586 GGTACGAAATGGTACGGGATTTG
1 GGTACGAAATGGTACGAGATTTG
26606609 GTATGAAATG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.28, C:0.09, G:0.36, T:0.28
Consensus pattern (24 bp):
GGTACGAAATGGTACGAGATTTGC
Found at i:26608281 original size:20 final size:21
Alignment explanation
Indices: 26608248--26608311 Score: 62
Period size: 20 Copynumber: 3.2 Consensus size: 21
26608238 CAGCTCCTTT
* * *
26608248 AGCTCGTTTTAGCTTCGA-TC
1 AGCTCATTTGAGCTTCAATTC
26608268 AGCTCATTTGAGC-TCAATTC
1 AGCTCATTTGAGCTTCAATTC
* *
26608288 AGCTCATTCGAGC-TCAATTT
1 AGCTCATTTGAGCTTCAATTC
26608308 AGCT
1 AGCT
26608312 TTCTATCAGC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
19 3 0.08
20 35 0.92
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (21 bp):
AGCTCATTTGAGCTTCAATTC
Found at i:26619812 original size:15 final size:14
Alignment explanation
Indices: 26619776--26619830 Score: 65
Period size: 15 Copynumber: 3.8 Consensus size: 14
26619766 TCTATCGAGC
26619776 GAGAAAAAGAAAAA
1 GAGAAAAAGAAAAA
*
26619790 GAGAAAAACAAAAA
1 GAGAAAAAGAAAAA
*
26619804 GAGTGAAAAGAAAAA
1 GAG-AAAAAGAAAAA
*
26619819 GAAAGAAAAGAA
1 GAGA-AAAAGAA
26619831 TGTCGAGAGT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
14 16 0.47
15 18 0.53
ACGTcount: A:0.75, C:0.02, G:0.22, T:0.02
Consensus pattern (14 bp):
GAGAAAAAGAAAAA
Found at i:26629583 original size:22 final size:21
Alignment explanation
Indices: 26629555--26629597 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 21
26629545 TTTCTGATCG
26629555 TGTGGTCTTTCTCTTATCAACT
1 TGTGGTCTTTCTCTTAT-AACT
26629577 TGTGGTCTTTCTCTTATAACT
1 TGTGGTCTTTCTCTTATAACT
26629598 ATATCTGCGG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.14, C:0.21, G:0.14, T:0.51
Consensus pattern (21 bp):
TGTGGTCTTTCTCTTATAACT
Found at i:26631383 original size:50 final size:50
Alignment explanation
Indices: 26631316--26631503 Score: 198
Period size: 49 Copynumber: 3.7 Consensus size: 50
26631306 TTCTGTACTA
* * * **
26631316 CCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTG
1 CCAATGCCATGTTCCAGACATGGTCTTACATGGGACCTCTCATATCGGTG
* * *
26631366 CCCATGCCATGTTCCAGACATGGTCTTA-AGGGGACCTCTCATCTCGGTG
1 CCAATGCCATGTTCCAGACATGGTCTTACATGGGACCTCTCATATCGGTG
* * **
26631415 CCAACGCCATGTTCCAGGCATGGTCTTACATGGGACCTCTCATAACCTCAATAATG
1 CCAATGCCATGTTCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GGTG
*
26631471 CCAATGCCATGTCCCAGACATGGTCTTACATGG
1 CCAATGCCATGTTCCAGACATGGTCTTACATGG
26631504 AATCTCACTC
Statistics
Matches: 113, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
49 42 0.37
50 37 0.33
53 2 0.02
56 32 0.28
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (50 bp):
CCAATGCCATGTTCCAGACATGGTCTTACATGGGACCTCTCATATCGGTG
Found at i:26636987 original size:50 final size:49
Alignment explanation
Indices: 26636929--26637052 Score: 131
Period size: 50 Copynumber: 2.5 Consensus size: 49
26636919 TACTGAGGTT
* *
26636929 ATGAGAGGTCCCATGTAAGACCATGCCTGGAACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCC-TGTAAGACCATGCCTGGAACATGGCATGGGCACCGAG
* * * * *
26636979 ATGAGAGGTCTCCCGTAAGACTATGTCTGGGACATGGCATGGGCACCGAT
1 ATGAGAGGTC-CCTGTAAGACCATGCCTGGAACATGGCATGGGCACCGAG
** *
26637029 ATGAGAACTCTCTTGTAAGACCAT
1 ATGAGAGGTC-CCTGTAAGACCAT
26637053 ATCTGGGATG
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
50 59 0.97
51 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.22
Consensus pattern (49 bp):
ATGAGAGGTCCCTGTAAGACCATGCCTGGAACATGGCATGGGCACCGAG
Found at i:26637058 original size:50 final size:50
Alignment explanation
Indices: 26636942--26637115 Score: 140
Period size: 50 Copynumber: 3.5 Consensus size: 50
26636932 AGAGGTCCCA
* * * * **
26636942 TGTAAGACCATGCCTGGAACATGGCGTTGGCACCGAGATGAGAGGTCTCC
1 TGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAACTCTCC
* * * *
26636992 CGTAAGACTATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCTCT
1 TGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAACTCTCC
* ** * * * *
26637042 TGTAAGACCATATCTGGGATGTGGTATTGGCA--GTACAGGA-AACATC-CC
1 TGTAAGACCATGTCTGGGACATGGCATGGGCACCG-AGATGAGAAC-TCTCC
26637090 ATGTAAGACCATGTCTGGGACATGGC
1 -TGTAAGACCATGTCTGGGACATGGC
26637116 TTTGGCATGT
Statistics
Matches: 97, Mismatches: 24, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
48 5 0.05
49 27 0.28
50 65 0.67
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.23
Consensus pattern (50 bp):
TGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAACTCTCC
Found at i:26641977 original size:40 final size:40
Alignment explanation
Indices: 26641924--26642312 Score: 395
Period size: 40 Copynumber: 9.8 Consensus size: 40
26641914 TATAAATAGT
* *
26641924 GGCACGTAA-GTGCATTCAGGGGTACCGAAGTACAAACAAG
1 GGCACG-AATGTGCAATCAGGGGTACCGAAGTACAAACAGG
* * * *
26641964 GGAACAAATGTGCAATCAGGGGTATCGAAGTACAAATAGG
1 GGCACGAATGTGCAATCAGGGGTACCGAAGTACAAACAGG
* * *
26642004 GGCACGTAA-GTGC-ATCCAGGGGTACTGAAGTACCAACAGA
1 GGCACG-AATGTGCAAT-CAGGGGTACCGAAGTACAAACAGG
* * * *
26642044 GGTACGTATGTGCAATCAGGGGTATCAAAGTAC-AACAGG
1 GGCACGAATGTGCAATCAGGGGTACCGAAGTACAAACAGG
* * *
26642083 GGCACGTAA-GTG-AATTCAGGGGTACCAAACTACAAACAAG
1 GGCACG-AATGTGCAA-TCAGGGGTACCGAAGTACAAACAGG
* * *
26642123 GGCATGTATGTGCAATCAGGGGTATCGAAGTAC-AACTA-G
1 GGCACGAATGTGCAATCAGGGGTACCGAAGTACAAAC-AGG
* * * *
26642162 GGCATGTAA-GTGTATTTAGGGGTACCGAAGTACAAACAGG
1 GGCACG-AATGTGCAATCAGGGGTACCGAAGTACAAACAGG
*
26642202 GGCACGTATGTGCAATCAGGGGTACCGAAGTAC-AACAGG
1 GGCACGAATGTGCAATCAGGGGTACCGAAGTACAAACAGG
26642241 GGCACGTAA-GTGCAATCAGGGGTACCGAAGTACAAACAGG
1 GGCACG-AATGTGCAATCAGGGGTACCGAAGTACAAACAGG
* *
26642281 GGCACGTATGTGCAATCAGGGGTATCGAAGTA
1 GGCACGAATGTGCAATCAGGGGTACCGAAGTA
26642313 TAATAGAGGC
Statistics
Matches: 289, Mismatches: 42, Indels: 36
0.79 0.11 0.10
Matches are distributed among these distances:
38 2 0.01
39 104 0.36
40 177 0.61
41 6 0.02
ACGTcount: A:0.34, C:0.17, G:0.31, T:0.18
Consensus pattern (40 bp):
GGCACGAATGTGCAATCAGGGGTACCGAAGTACAAACAGG
Found at i:26642067 original size:20 final size:20
Alignment explanation
Indices: 26641927--26642304 Score: 160
Period size: 20 Copynumber: 19.1 Consensus size: 20
26641917 AAATAGTGGC
*
26641927 ACGTAAGTGCATTCAGGGGT
1 ACGTAAGTGCAATCAGGGGT
* * * *
26641947 ACCG-AAGTACAAACAAGGGA
1 A-CGTAAGTGCAATCAGGGGT
*
26641967 AC-AAATGTGCAATCAGGGGT
1 ACGTAA-GTGCAATCAGGGGT
* *
26641987 ATCG-AAGTACAAAT-AGGGGC
1 A-CGTAAGTGC-AATCAGGGGT
26642007 ACGTAAGTGC-ATCCAGGGGT
1 ACGTAAGTGCAAT-CAGGGGT
* *
26642027 AC-TGAAGTACCAA-CAGAGGT
1 ACGT-AAGT-GCAATCAGGGGT
*
26642047 ACGTATGTGCAATCAGGGGT
1 ACGTAAGTGCAATCAGGGGT
* * *
26642067 ATC-AAAGTACAA-CAGGGGC
1 A-CGTAAGTGCAATCAGGGGT
26642086 ACGTAAGTG-AATTCAGGGGT
1 ACGTAAGTGCAA-TCAGGGGT
** * * * * *
26642106 ACCAAACTACAAACAAGGGC
1 ACGTAAGTGCAATCAGGGGT
* *
26642126 ATGTATGTGCAATCAGGGGT
1 ACGTAAGTGCAATCAGGGGT
* *
26642146 ATCG-AAGTACAA-CTA-GGGC
1 A-CGTAAGTGCAATC-AGGGGT
* * * *
26642165 ATGTAAGTGTATTTAGGGGT
1 ACGTAAGTGCAATCAGGGGT
* * *
26642185 ACCG-AAGTACAAACAGGGGC
1 A-CGTAAGTGCAATCAGGGGT
*
26642205 ACGTATGTGCAATCAGGGGT
1 ACGTAAGTGCAATCAGGGGT
* *
26642225 ACCG-AAGTACAA-CAGGGGC
1 A-CGTAAGTGCAATCAGGGGT
26642244 ACGTAAGTGCAATCAGGGGT
1 ACGTAAGTGCAATCAGGGGT
* * *
26642264 ACCG-AAGTACAAACAGGGGC
1 A-CGTAAGTGCAATCAGGGGT
*
26642284 ACGTATGTGCAATCAGGGGT
1 ACGTAAGTGCAATCAGGGGT
26642304 A
1 A
26642305 TCGAAGTATA
Statistics
Matches: 253, Mismatches: 74, Indels: 62
0.65 0.19 0.16
Matches are distributed among these distances:
18 8 0.03
19 49 0.19
20 176 0.70
21 19 0.08
22 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.31, T:0.18
Consensus pattern (20 bp):
ACGTAAGTGCAATCAGGGGT
Found at i:26642132 original size:79 final size:79
Alignment explanation
Indices: 26641924--26642337 Score: 580
Period size: 79 Copynumber: 5.2 Consensus size: 79
26641914 TATAAATAGT
* **
26641924 GGCACGTAAGTGCATTCAGGGGTACCGAAGTACAAACAAGGGAACAAATGTGCAATCAGGGGTAT
1 GGCACGTAAGTGCATTCAGGGGTACCGAAGTACAAACAAGGGCACGTATGTGCAATCAGGGGTAT
*
26641989 CGAAGTACAAATAGG
66 CGAAGTAC-AACAGG
* * * *
26642004 GGCACGTAAGTGCATCCAGGGGTACTGAAGTACCAAC-AGAGGTACGTATGTGCAATCAGGGGTA
1 GGCACGTAAGTGCATTCAGGGGTACCGAAGTACAAACAAG-GGCACGTATGTGCAATCAGGGGTA
*
26642068 TCAAAGTACAACAGG
65 TCGAAGTACAACAGG
* * * *
26642083 GGCACGTAAGTGAATTCAGGGGTACCAAACTACAAACAAGGGCATGTATGTGCAATCAGGGGTAT
1 GGCACGTAAGTGCATTCAGGGGTACCGAAGTACAAACAAGGGCACGTATGTGCAATCAGGGGTAT
26642148 CGAAGTACAACTA-G
66 CGAAGTACAAC-AGG
* * * * *
26642162 GGCATGTAAGTGTATTTAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTAC
1 GGCACGTAAGTGCATTCAGGGGTACCGAAGTACAAACAAGGGCACGTATGTGCAATCAGGGGTAT
26642227 CGAAGTACAACAGG
66 CGAAGTACAACAGG
* *
26642241 GGCACGTAAGTGCAATCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTAT
1 GGCACGTAAGTGCATTCAGGGGTACCGAAGTACAAACAAGGGCACGTATGTGCAATCAGGGGTAT
* * *
26642306 CGAAGTATAATAGA
66 CGAAGTACAACAGG
26642320 GGCACGTAAGTGCATTCA
1 GGCACGTAAGTGCATTCA
26642338 TACAATAATT
Statistics
Matches: 296, Mismatches: 34, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
78 1 0.00
79 229 0.77
80 66 0.22
ACGTcount: A:0.34, C:0.17, G:0.30, T:0.18
Consensus pattern (79 bp):
GGCACGTAAGTGCATTCAGGGGTACCGAAGTACAAACAAGGGCACGTATGTGCAATCAGGGGTAT
CGAAGTACAACAGG
Found at i:26645005 original size:33 final size:33
Alignment explanation
Indices: 26644957--26645116 Score: 101
Period size: 33 Copynumber: 4.8 Consensus size: 33
26644947 GCATCTATAG
*
26644957 AGAGAAAGT-CTATCGGAACAGTAAACACAGAAT
1 AGAGAAAGTAC-ATCGGAACAGTAAACACAGAAC
* * **
26644990 AGAGATAGTACATCGGGACAGTAAACATGGAAC
1 AGAGAAAGTACATCGGAACAGTAAACACAGAAC
* * * * * * *
26645023 AGAAAAATTTCATTTGG-ACAATAAACACAAAAT
1 AGAGAAAGTACA-TCGGAACAGTAAACACAGAAC
* * * **
26645056 AGAGATAGTCCA-CCGAGAGGGTAAACACAGAAC
1 AGAGAAAGTACATCGGA-ACAGTAAACACAGAAC
* *
26645089 AAAGAAAGTACATCGGGACAGTAAACAC
1 AGAGAAAGTACATCGGAACAGTAAACAC
26645117 GAGGTAAGTC
Statistics
Matches: 89, Mismatches: 33, Indels: 10
0.67 0.25 0.08
Matches are distributed among these distances:
31 1 0.01
33 82 0.92
34 6 0.07
ACGTcount: A:0.47, C:0.16, G:0.21, T:0.15
Consensus pattern (33 bp):
AGAGAAAGTACATCGGAACAGTAAACACAGAAC
Found at i:26645108 original size:66 final size:66
Alignment explanation
Indices: 26644959--26645116 Score: 158
Period size: 66 Copynumber: 2.4 Consensus size: 66
26644949 ATCTATAGAG
* * * * **
26644959 AGAAAGTCTATCGGAACAGTAAACACAGAATAGAGATAGTACATCGGGACAGTAAACATGGAACA
1 AGAAAGTC-ATCGGGACAGTAAACACAAAATAGAGATAGTACACCGAGACAGTAAACACAGAACA
26645024 GA
65 GA
* ** * * **
26645026 A-AAATTTCATTTGGACAATAAACACAAAATAGAGATAGTCCACCGAGAGGGTAAACACAGAACA
1 AGAAA-GTCATCGGGACAGTAAACACAAAATAGAGATAGTACACCGAGACAGTAAACACAGAACA
26645090 -A
65 GA
26645091 AGAAAGTACATCGGGACAGTAAACAC
1 AGAAAGT-CATCGGGACAGTAAACAC
26645117 GAGGTAAGTC
Statistics
Matches: 71, Mismatches: 17, Indels: 7
0.75 0.18 0.07
Matches are distributed among these distances:
65 3 0.04
66 65 0.92
67 3 0.04
ACGTcount: A:0.47, C:0.16, G:0.21, T:0.15
Consensus pattern (66 bp):
AGAAAGTCATCGGGACAGTAAACACAAAATAGAGATAGTACACCGAGACAGTAAACACAGAACAG
A
Found at i:26648969 original size:13 final size:13
Alignment explanation
Indices: 26648951--26648986 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
26648941 TTAGTTTTCT
*
26648951 AAAAACCTTAGTA
1 AAAAACATTAGTA
26648964 AAAAACATTAGTA
1 AAAAACATTAGTA
26648977 AAAAACATTA
1 AAAAACATTA
26648987 CCGATAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.61, C:0.11, G:0.06, T:0.22
Consensus pattern (13 bp):
AAAAACATTAGTA
Found at i:26652729 original size:30 final size:32
Alignment explanation
Indices: 26652678--26652737 Score: 88
Period size: 31 Copynumber: 1.9 Consensus size: 32
26652668 TGGGTCGCAT
*
26652678 CCAAAACAGAATCAATTGGGCCT-AGCCCAAA
1 CCAAAACAGAATCAAGTGGGCCTAAGCCCAAA
*
26652709 CCAATACAGAA-CAAGTGGGCCTAAGCCCA
1 CCAAAACAGAATCAAGTGGGCCTAAGCCCA
26652738 GTACAGTGAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 10 0.38
31 16 0.62
ACGTcount: A:0.40, C:0.30, G:0.18, T:0.12
Consensus pattern (32 bp):
CCAAAACAGAATCAAGTGGGCCTAAGCCCAAA
Found at i:26661143 original size:84 final size:84
Alignment explanation
Indices: 26661036--26661648 Score: 941
Period size: 84 Copynumber: 7.3 Consensus size: 84
26661026 AAGGATCCCG
* * *
26661036 GTGGAATCACCACTTAGCTACCACCTTATAATCAATGATACGGGGAATCAACACATAGCAACCCC
1 GTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCCC
26661101 TTTCACAATCAAGGATACA
66 TTTCACAATCAAGGATACA
* * **
26661120 GTGGAATCAGCACTTAGCAACCACCATATAATCAATGATACGGGGAATCAACATGTAGCAACCCC
1 GTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCCC
*
26661185 TTTCACAATCAAGGATACG
66 TTTCACAATCAAGGATACA
* *
26661204 GTGGAATCAACACTTAGCAACCACCTTATAATCAATGATACAGGGAATCAGCACATAGCAACCCC
1 GTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCCC
26661269 TTTCACAATCAAGGATAC-
66 TTTCACAATCAAGGATACA
*
26661287 GATGGAATCAACACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCC
1 G-TGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCC
*
26661352 CTTTCACAATCTAGGATACA
65 CTTTCACAATCAAGGATACA
* * *
26661372 GTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCACCACGTAGCAATCCC
1 GTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCCC
26661437 TTTCACAATCAAGGATA-A
66 TTTCACAATCAAGGATACA
* *
26661455 TTTGGAATTAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCC
1 -GTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCC
*
26661520 CTTTCACAATCAAGGATA-T
65 CTTTCACAATCAAGGATACA
26661539 GATGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCC
1 G-TGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCC
*** * *
26661604 CTTT-TTGATCAATGATTCA
65 CTTTCACAATCAAGGATACA
*
26661623 G-GGAATCTGCACTTAGCAACC-CCTTA
1 GTGGAATCAGCACTTAGCAACCACCTTA
26661649 CATTCAAAGA
Statistics
Matches: 490, Mismatches: 34, Indels: 13
0.91 0.06 0.02
Matches are distributed among these distances:
81 5 0.01
82 19 0.04
83 10 0.02
84 455 0.93
85 1 0.00
ACGTcount: A:0.36, C:0.26, G:0.16, T:0.22
Consensus pattern (84 bp):
GTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCCC
TTTCACAATCAAGGATACA
Found at i:26665612 original size:41 final size:40
Alignment explanation
Indices: 26665550--26665829 Score: 326
Period size: 41 Copynumber: 6.7 Consensus size: 40
26665540 TAACCGTTAC
* *
26665550 ACGGTGGAATCACCACTTAGCAACCACCTTATAATAAATGAT
1 ACGG-GGAATCAGCACTTAGCAACC-CCTTATAATCAATGAT
* * *
26665592 ACGGGGAATCAGCACATAGCAACCCCTTTCACAATCAAGGAT
1 ACGGGGAATCAGCACTTAGCAACCCC-TT-ATAATCAATGAT
26665634 ACGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGAT
1 ACGG-GGAATCAGCACTTAGCAACC-CCTTATAATCAATGAT
* * *
26665676 ACGGGGAATCAGCACATAGCAACCCCTTTCACAATCAAGGAT
1 ACGGGGAATCAGCACTTAGCAACCCC-TT-ATAATCAATGAT
*
26665718 ACGGTGGAATCAGCACTTAGCAACCACTTTATAATCAATGAT
1 ACGG-GGAATCAGCACTTAGCAACC-CCTTATAATCAATGAT
* * *
26665760 ACGGGGAATCAGCACATAGCAACCCCTTTTTGATCAATGAT
1 ACGGGGAATCAGCACTTAGCAACCCC-TTATAATCAATGAT
* * *
26665801 TCGGGGAATCTGCACTTAGTAACCCCTTA
1 ACGGGGAATCAGCACTTAGCAACCCCTTA
26665830 CATTCAAAGA
Statistics
Matches: 205, Mismatches: 24, Indels: 20
0.82 0.10 0.08
Matches are distributed among these distances:
40 7 0.03
41 94 0.46
42 59 0.29
43 42 0.20
44 3 0.01
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (40 bp):
ACGGGGAATCAGCACTTAGCAACCCCTTATAATCAATGAT
Found at i:26665691 original size:84 final size:84
Alignment explanation
Indices: 26665550--26665788 Score: 451
Period size: 84 Copynumber: 2.8 Consensus size: 84
26665540 TAACCGTTAC
* *
26665550 ACGGTGGAATCACCACTTAGCAACCACCTTATAATAAATGATACGGGGAATCAGCACATAGCAAC
1 ACGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAAC
26665615 CCCTTTCACAATCAAGGAT
66 CCCTTTCACAATCAAGGAT
26665634 ACGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAAC
1 ACGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAAC
26665699 CCCTTTCACAATCAAGGAT
66 CCCTTTCACAATCAAGGAT
*
26665718 ACGGTGGAATCAGCACTTAGCAACCACTTTATAATCAATGATACGGGGAATCAGCACATAGCAAC
1 ACGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAAC
26665783 CCCTTT
66 CCCTTT
26665789 TTGATCAATG
Statistics
Matches: 152, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
84 152 1.00
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.21
Consensus pattern (84 bp):
ACGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAAC
CCCTTTCACAATCAAGGAT
Found at i:26674068 original size:21 final size:21
Alignment explanation
Indices: 26674042--26674099 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
26674032 CAGCATACTT
26674042 AGATGCATCCACAACA-AATCC
1 AGATGCATCCACAACAGAAT-C
*
26674063 AGATGCATCCACACCAGAATC
1 AGATGCATCCACAACAGAATC
* *
26674084 AGACGCAACCACAACA
1 AGATGCATCCACAACA
26674100 CACTTCAATG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
21 29 0.91
22 3 0.09
ACGTcount: A:0.43, C:0.34, G:0.12, T:0.10
Consensus pattern (21 bp):
AGATGCATCCACAACAGAATC
Found at i:26684958 original size:17 final size:18
Alignment explanation
Indices: 26684919--26684959 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
26684909 TTTTATAAAT
26684919 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGATA
26684937 TGTGAATTA-ATATTGA-A
1 TGTGAATTATAT-TTGATA
26684954 TGTGAA
1 TGTGAA
26684960 AGGAAAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.37, C:0.00, G:0.20, T:0.44
Consensus pattern (18 bp):
TGTGAATTATATTTGATA
Found at i:26685210 original size:23 final size:23
Alignment explanation
Indices: 26685183--26685258 Score: 125
Period size: 23 Copynumber: 3.3 Consensus size: 23
26685173 AGTGTTATTG
*
26685183 ATCAGTGGTAGCTCCGGCTACAT
1 ATCAGTGGTAGCTACGGCTACAT
*
26685206 TTCAGTGGTAGCTACGGCTACAT
1 ATCAGTGGTAGCTACGGCTACAT
*
26685229 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTACGGCTACAT
26685252 ATCAGTG
1 ATCAGTG
26685259 TGGCACTTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 49 1.00
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.29
Consensus pattern (23 bp):
ATCAGTGGTAGCTACGGCTACAT
Found at i:26690887 original size:12 final size:14
Alignment explanation
Indices: 26690870--26690902 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
26690860 TAATGGTCAC
26690870 ATGTGTA-G-TACT
1 ATGTGTAGGCTACT
26690882 ATGTGTAGGCTACT
1 ATGTGTAGGCTACT
26690896 ATGTGTA
1 ATGTGTA
26690903 CCGGAAAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.37
13 1 0.05
14 11 0.58
ACGTcount: A:0.24, C:0.09, G:0.27, T:0.39
Consensus pattern (14 bp):
ATGTGTAGGCTACT
Found at i:26690934 original size:50 final size:50
Alignment explanation
Indices: 26690817--26690952 Score: 168
Period size: 50 Copynumber: 2.7 Consensus size: 50
26690807 GCCTATAAAT
* * * *
26690817 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGATAGATAATGGTC
1 ACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGAAAGAT-ATGGTC
* * *
26690868 ACATGTGTAGTACTATGTGTAGGCTACTATGTGTACCGGAAAG-T-TGGATC
1 ACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACC-GAAAGATATGG-TC
26690918 ACGTGTGTAGTACTATGTGAAGGCTACTACGTGTA
1 ACGTGTGTAGTACTATGTGAAGGCTACTACGTGTA
26690953 TTGAATGATA
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
49 3 0.04
50 34 0.46
51 33 0.45
52 4 0.05
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (50 bp):
ACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGAAAGATATGGTC
Found at i:26692459 original size:11 final size:11
Alignment explanation
Indices: 26692439--26692486 Score: 78
Period size: 11 Copynumber: 4.4 Consensus size: 11
26692429 CTTCATTCAT
*
26692439 CATCCCTCAAG
1 CATCCTTCAAG
26692450 CATCCTTCAAG
1 CATCCTTCAAG
26692461 CATCCTTCAAG
1 CATCCTTCAAG
*
26692472 CATCCATCAAG
1 CATCCTTCAAG
26692483 CATC
1 CATC
26692487 ATTCTTTATT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 35 1.00
ACGTcount: A:0.29, C:0.40, G:0.08, T:0.23
Consensus pattern (11 bp):
CATCCTTCAAG
Found at i:26695863 original size:22 final size:21
Alignment explanation
Indices: 26695834--26695879 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
26695824 TATAATTCCT
*
26695834 ATAATTTCAAAAATTTTACAA
1 ATAATTTCAAAAAGTTTACAA
* *
26695855 ATAACTTTCAAGAAGTTTCCAA
1 ATAA-TTTCAAAAAGTTTACAA
26695877 ATA
1 ATA
26695880 TCCTCGTTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.48, C:0.13, G:0.04, T:0.35
Consensus pattern (21 bp):
ATAATTTCAAAAAGTTTACAA
Found at i:26703823 original size:44 final size:44
Alignment explanation
Indices: 26703775--26703869 Score: 163
Period size: 44 Copynumber: 2.2 Consensus size: 44
26703765 ATATCTCAAG
*
26703775 GTCCATGTTTATAACATGGCAATTAAGGAAGAATTGACGAAAAA
1 GTCCATGTTTATAACATGGCAATTAAGAAAGAATTGACGAAAAA
*
26703819 GTCCATGTTTATAACATGGCAATTAAGAAAGAATTGACGGAAAA
1 GTCCATGTTTATAACATGGCAATTAAGAAAGAATTGACGAAAAA
*
26703863 GACCATG
1 GTCCATG
26703870 GTTGGACCAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 48 1.00
ACGTcount: A:0.42, C:0.13, G:0.21, T:0.24
Consensus pattern (44 bp):
GTCCATGTTTATAACATGGCAATTAAGAAAGAATTGACGAAAAA
Found at i:26703949 original size:50 final size:49
Alignment explanation
Indices: 26703890--26704119 Score: 263
Period size: 50 Copynumber: 4.7 Consensus size: 49
26703880 GACAGTAAGT
*
26703890 GTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCACAGATCGAGGA
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGA-CGAGGA
*
26703940 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACCGGGGA
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGA-CGAGGA
* * * *
26703990 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGACAAAGAA
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAC-GAGGA
* ** *
26704040 GAGTAAGTGTAAGACCATGTCTGGGACA-GGCATCGGC-TAGA-GATGTGA
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACGA-G-GA
* * *
26704088 -TCCCA-TGTAAGACCATATCTGGGATATGGCAT
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCAT
26704120 TAGCGTCCTA
Statistics
Matches: 155, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
46 20 0.13
47 7 0.05
48 3 0.02
49 10 0.06
50 115 0.74
ACGTcount: A:0.28, C:0.20, G:0.32, T:0.20
Consensus pattern (49 bp):
GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACGAGGA
Found at i:26719873 original size:14 final size:14
Alignment explanation
Indices: 26719836--26719874 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
26719826 ATGAAAATGA
* *
26719836 AAAAAGAGAGAAGG
1 AAAAAGAAAAAAGG
26719850 AAAAAGGAAAAAAGG
1 AAAAA-GAAAAAAGG
26719865 AAAAAGAAAA
1 AAAAAGAAAA
26719875 GGAGAGGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 10 0.45
15 12 0.55
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (14 bp):
AAAAAGAAAAAAGG
Found at i:26720741 original size:8 final size:8
Alignment explanation
Indices: 26720722--26720772 Score: 54
Period size: 8 Copynumber: 6.6 Consensus size: 8
26720712 CTTTGAGTAA
26720722 AAAAAATG
1 AAAAAATG
26720730 -AAAAATG
1 AAAAAATG
26720737 AAAAAAATG
1 -AAAAAATG
26720746 --AAAATG
1 AAAAAATG
*
26720752 AAAATATG
1 AAAAAATG
*
26720760 AAAATATG
1 AAAAAATG
26720768 AAAAA
1 AAAAA
26720773 GTAAAAATGA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
6 6 0.16
7 7 0.19
8 17 0.46
9 7 0.19
ACGTcount: A:0.73, C:0.00, G:0.12, T:0.16
Consensus pattern (8 bp):
AAAAAATG
Found at i:26720742 original size:16 final size:16
Alignment explanation
Indices: 26720721--26720772 Score: 72
Period size: 16 Copynumber: 3.3 Consensus size: 16
26720711 ACTTTGAGTA
26720721 AAAAAAATGAAAAATG
1 AAAAAAATGAAAAATG
26720737 AAAAAAATG-AAAATG
1 AAAAAAATGAAAAATG
*
26720752 -AAAATATGAAAATATG
1 AAAAAAATGAAAA-ATG
26720768 AAAAA
1 AAAAA
26720773 GTAAAAATGA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
14 7 0.22
15 9 0.28
16 12 0.38
17 4 0.12
ACGTcount: A:0.73, C:0.00, G:0.12, T:0.15
Consensus pattern (16 bp):
AAAAAAATGAAAAATG
Found at i:26720750 original size:22 final size:22
Alignment explanation
Indices: 26720724--26720783 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 22
26720714 TTGAGTAAAA
26720724 AAAATGAAAAATGAAAAAAATG
1 AAAATGAAAAATGAAAAAAATG
*
26720746 AAAATGAAAATATG-AAAATATG
1 AAAATGAAAA-ATGAAAAAAATG
*
26720768 AAAAAGTAAAAATGAA
1 AAAATG-AAAAATGAA
26720784 GAGGCTAAGG
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
22 25 0.76
23 8 0.24
ACGTcount: A:0.70, C:0.00, G:0.13, T:0.17
Consensus pattern (22 bp):
AAAATGAAAAATGAAAAAAATG
Found at i:26720780 original size:30 final size:30
Alignment explanation
Indices: 26720722--26720783 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
26720712 CTTTGAGTAA
*
26720722 AAAAAATGAAAAATGAAAAAAATGAAAATG
1 AAAAAATGAAAAATGAAAAAAATAAAAATG
* *
26720752 AAAATATGAAAATATG-AAAAAGTAAAAATG
1 AAAAAATGAAAA-ATGAAAAAAATAAAAATG
26720782 AA
1 AA
26720784 GAGGCTAAGG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 25 0.89
31 3 0.11
ACGTcount: A:0.71, C:0.00, G:0.13, T:0.16
Consensus pattern (30 bp):
AAAAAATGAAAAATGAAAAAAATAAAAATG
Found at i:26722256 original size:129 final size:129
Alignment explanation
Indices: 26722026--26722467 Score: 722
Period size: 129 Copynumber: 3.4 Consensus size: 129
26722016 TCGGTGAAAT
26722026 CACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAA
1 CACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAA
* * ** *
26722091 GCAGTAGCAGAGCAAATCGAAGACAACAAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
66 GCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
* * * *
26722155 CACAAGTCCTACATCCCTGGTCAGCAGTGGAACATGTTGGGAAATTACAGATCTTGTCTCTCTAA
1 CACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAA
* *
26722220 GCAGTAGCGGAGCAGGTCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
66 GCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
*
26722284 AACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAA
1 CACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAA
* * *
26722349 GCAGTAGCGAAGCAGATTGAAGATGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
66 GCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
* * *
26722413 CACAAGTCCTATATCCCTGGTTAGCAGTGGAATAGGTTGGGAAATTGCAGGTCTT
1 CACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTT
26722468 ATCCCCCTGA
Statistics
Matches: 288, Mismatches: 25, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
129 288 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.25
Consensus pattern (129 bp):
CACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAA
GCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
Found at i:26722572 original size:44 final size:43
Alignment explanation
Indices: 26722507--26723353 Score: 334
Period size: 44 Copynumber: 19.6 Consensus size: 43
26722497 GAAGATAGTA
* * *
26722507 AATCTTATCTCTCTGAGGTTGTAGTGGAGCAGATTAAAGCCGAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-CGAT
* * * * **
26722551 AATCCTATCTCCCTGAAGTTGTAGTGGAGCGGGTTAAAGTAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCGAT
* * ** *
26722594 AGATCTTATCTCTCTGAAGTTGAAGTGGAGTGGA-T--CGC-ATT
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCGA-T
* * * * *
26722635 AGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGCAGGT
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTA--AAGC-GAT
* ** * *
26722683 --T-TTATCCCCCTGAAGTTGCAGTGG-GACAGATCGAAGATGAAA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAG-CAGATTAAAG-CG-AT
* * * * *
26722725 AATCTTATCTCCTTGAGGTTGTAGTGGAGCAGATTGAGGCCGAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-CGAT
* * * * **
26722769 AATCCTATCTCCCTGAAGTTGTAGTGGAGCGGGTTAAAGTAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCGAT
* * ** *
26722812 AGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGA-T--CGC-AT
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCGAT
* * *
26722852 CAGGTCTTATCCCCCTGAAGTTGCAGTGG-GACAGATCGAAGAAGC-A-
1 -A-ATCTTATCTCCCTGAAGTTGCAGTGGAG-CAGAT--TA-AAGCGAT
* *
26722898 AATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCCGAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-CGAT
* * * **
26722942 AATCCTATCTCCCTAAAGTT---GTGGAGCGGATTAAAGTAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCGAT
* * * ** *
26722982 AGATCTTATCACTCTGAAGTTGCAGTAGAGTGGA-T--CGC-AT
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCGAT
* * *
26723022 CAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCCGAT
1 -A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-CGAT
* * * **
26723068 AATCCTT-TCTCCTTGAAGTTGTAGTGGAGCGGATTAAAGTAAT
1 AAT-CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCGAT
* * * ** *
26723111 AGATCTTATCTCTCTGAAGTTGTAGTAGAGTGGA-T--CGC-AT
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCGAT
* * * * * ** *
26723151 CAGGTCTTATCTCCTTGAGGTTGCAGTGGAGCAGA-CAGAGAAAAC
1 -A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-CGAT
** * *
26723196 AAGTCTTATC-CCTCTGAAGTCACAGTGGGGCAGACTGAAAAAGC-A-
1 AA-TCTTATCTCC-CTGAAGTTGCAGTGGAGCAGA-T--TAAAGCGAT
* *
26723241 AATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCCGAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-CGAT
* * * * **
26723285 AATCCTATCTCCTTGAAGTTGTAGTGGAGCGGATTAAAGTAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCGAT
*
26723328 AGATCTTATCTCTCTGAAGTTGCAGT
1 A-ATCTTATCTCCCTGAAGTTGCAGT
26723354 AAATCGCATC
Statistics
Matches: 597, Mismatches: 147, Indels: 118
0.69 0.17 0.14
Matches are distributed among these distances:
40 11 0.02
41 150 0.25
42 3 0.01
43 27 0.05
44 352 0.59
45 41 0.07
46 4 0.01
47 5 0.01
48 4 0.01
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (43 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCGAT
Found at i:26722667 original size:129 final size:129
Alignment explanation
Indices: 26722509--26723185 Score: 578
Period size: 129 Copynumber: 5.2 Consensus size: 129
26722499 AGATAGTAAA
* *
26722509 TCTTATCTCTCTGAGGTTGTAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGTA
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGTA
* * *
26722574 GTGGAGCGGGTTAAAGTAATAGATCTTATCTCTCTGAAGTTGAAGTGGAGTGGATCGCATTAGG
66 GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTGGAGTGGATCGCATCAGG
* * * * * *
26722638 TCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGCAGGT--T-TTATCCCCCTGAAGTT
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGA-TTA--AAGCCGATAATCCTATCTCCCTGAAGTT
* * ** * * * **
26722700 GCAGTGG-GACAGATCGAAGATGAA-AAATCTTATCTC-CTTGAGGTTGTAGTGGAGCAGATTGA
63 GTAGTGGAG-CGGATTAAAG-T-AATAGATCTTATCTCTC-TGAAGTTGCAGTGGAGTGGA-T--
* *
26722762 GGCCGAT-A-A
121 CG-C-ATCAGG
* * * * * ** * * *
26722771 TCCTATCTCCCTGAAGTTGTAGTGGAGCGGGTTAAAG-TAATAGATCTTATCTCTCTGAAGTTGC
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTAAAGCCGATA-ATCCTATCTCCCTGAAGTTGT
* * * * * * * * * *
26722835 AGTAGAGTGGA-T--CG-CATCAGGTCTTATCCCCCTGAAGTTGCAGTGGGACAGATCGA-AGAA
65 AGTGGAGCGGATTAAAGTAAT-AGATCTTATCTCTCTGAAGTTGCAGT-GG--AG-TGGATCGCA
* **
26722895 GCAAA
125 TCAGG
* *
26722900 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCCTAAAG-T-T-
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGTA
* *
26722962 GTGGAGCGGATTAAAGTAATAGATCTTATCACTCTGAAGTTGCAGTAGAGTGGATCGCATCAGG
66 GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTGGAGTGGATCGCATCAGG
* * *
26723026 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCCGATAATCCTTTCTCCTTGAAGTTGTA
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGTA
* *
26723091 GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGTAGTAGAGTGGATCGCATCAGG
66 GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTGGAGTGGATCGCATCAGG
*
26723155 TCTTATCTCCTTGAGGTTGCAGTGGAGCAGA
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGA
26723186 CAGAGAAAAC
Statistics
Matches: 433, Mismatches: 80, Indels: 70
0.74 0.14 0.12
Matches are distributed among these distances:
125 3 0.01
126 71 0.16
127 4 0.01
128 5 0.01
129 238 0.55
130 43 0.10
131 3 0.01
132 11 0.03
133 50 0.12
134 3 0.01
135 2 0.00
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (129 bp):
TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGTA
GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTGGAGTGGATCGCATCAGG
Found at i:26722735 original size:218 final size:218
Alignment explanation
Indices: 26722459--26722877 Score: 716
Period size: 218 Copynumber: 1.9 Consensus size: 218
26722449 TTGGGAAATT
*
26722459 GCAGGTCTTATCCCCCTGAAGTTACAGTGGGACAGATCGAAGATAGTAAATCTTATCT-CTCTGA
1 GCAGGTCTTATCCCCCTGAAGTTACAGTGGGACAGATCGAAGATAGAAAATCTTATCTCCT-TGA
26722523 GGTTGTAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGGTTAA
65 GGTTGTAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGGTTAA
* * * *
26722588 AGTAATAGATCTTATCTCTCTGAAGTTGAAGTGGAGTGGATCGCATTAGGTCTTATCTCCCTGAG
130 AGTAATAGATCTTATCTCTCTGAAGTTGAAGTAGAGTGGATCGCATCAGGTCTTATCCCCCTGAA
26722653 GTTGCAGCGGAGCAGACTGAGTAA
195 GTTGCAGCGGAGCAGACTGAGTAA
* *
26722677 GCAGGTTTTATCCCCCTGAAGTTGCAGTGGGACAGATCGAAGAT-GAAAAATCTTATCTCCTTGA
1 GCAGGTCTTATCCCCCTGAAGTTACAGTGGGACAGATCGAAGATAG-AAAATCTTATCTCCTTGA
* *
26722741 GGTTGTAGTGGAGCAGATTGAGGCCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGGTTAA
65 GGTTGTAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGGTTAA
*
26722806 AGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCCCCCTGAA
130 AGTAATAGATCTTATCTCTCTGAAGTTGAAGTAGAGTGGATCGCATCAGGTCTTATCCCCCTGAA
26722871 GTTGCAG
195 GTTGCAG
26722878 TGGGACAGAT
Statistics
Matches: 189, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
217 1 0.01
218 186 0.98
219 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (218 bp):
GCAGGTCTTATCCCCCTGAAGTTACAGTGGGACAGATCGAAGATAGAAAATCTTATCTCCTTGAG
GTTGTAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGGTTAAA
GTAATAGATCTTATCTCTCTGAAGTTGAAGTAGAGTGGATCGCATCAGGTCTTATCCCCCTGAAG
TTGCAGCGGAGCAGACTGAGTAA
Found at i:26722880 original size:85 final size:85
Alignment explanation
Indices: 26722774--26723058 Score: 283
Period size: 85 Copynumber: 3.4 Consensus size: 85
26722764 CCGATAATCC
* *
26722774 TATCTCCCTGAAGTTGTAGTGGAGCGGGTTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTA
26722839 GAGTGGATCGCATCAGGTCT
66 GAGTGGATCGCATCAGGTCT
* * ** * * * *
26722859 TATCCCCCTGAAGTTGCAGTGG-GACAGATCGAAG-AAGCAAATCTTATCTCCCTGAGGTTGCAG
1 TATCTCCCTGAAGTTGCAGTGGAG-CGGATTAAAGTAA-TAGATCTTATCTCTCTGAAGTTGCAG
* ** * * * ** *
26722922 TGGAGCAGATTGAAGCCGATAATCC
64 TAGAGTGGATCGCA-TC-A-GGTCT
* *
26722947 TATCTCCCTAAAGTT---GTGGAGCGGATTAAAGTAATAGATCTTATCACTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTA
26723009 GAGTGGATCGCATCAGGTCT
66 GAGTGGATCGCATCAGGTCT
* *
26723029 TATCTCCCTGAGGTTGCAGTGGAGCAGATT
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATT
26723059 GAAGCCGATA
Statistics
Matches: 149, Mismatches: 41, Indels: 20
0.71 0.20 0.10
Matches are distributed among these distances:
82 15 0.10
83 1 0.01
84 4 0.03
85 109 0.73
86 4 0.03
87 1 0.01
88 15 0.10
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (85 bp):
TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTA
GAGTGGATCGCATCAGGTCT
Found at i:26722921 original size:218 final size:218
Alignment explanation
Indices: 26722464--26722924 Score: 707
Period size: 218 Copynumber: 2.1 Consensus size: 218
26722454 AAATTGCAGG
* *
26722464 TCTTATCCCCCTGAAGTTACAGTGGGACAGATCGAAGATAGTAAATCTTATCTCTCTGAGGTTGT
1 TCTTATCCCCCTGAAGTTGCAGTGGGACAGATCGAAGATAGAAAATCTTATCTCTCTGAGGTTGT
26722529 AGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGGTTAAAGTAAT
66 AGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGGTTAAAGTAAT
* * * *
26722594 AGATCTTATCTCTCTGAAGTTGAAGTGGAGTGGATCGCATTAGGTCTTATCTCCCTGAGGTTGCA
131 AGATCTTATCTCTCTGAAGTTGAAGTAGAGTGGATCGCATCAGGTCTTATCCCCCTGAAGTTGCA
**
26722659 GCGGAGCAGACTGAGTAAGCAGG
196 GCGGAGCAGACTGAGTAAGCAAA
*
26722682 TTTTATCCCCCTGAAGTTGCAGTGGGACAGATCGAAGAT-GAAAAATCTTATCTC-CTTGAGGTT
1 TCTTATCCCCCTGAAGTTGCAGTGGGACAGATCGAAGATAG-AAAATCTTATCTCTC-TGAGGTT
* *
26722745 GTAGTGGAGCAGATTGAGGCCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGGTTAAAGTA
64 GTAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGGTTAAAGTA
*
26722810 ATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCCCCCTGAAGTTG
129 ATAGATCTTATCTCTCTGAAGTTGAAGTAGAGTGGATCGCATCAGGTCTTATCCCCCTGAAGTTG
*
26722875 CAGTGG-GACAGA-TCGAAG-AAGCAAA
194 CAGCGGAG-CAGACT-G-AGTAAGCAAA
* *
26722900 TCTTATCTCCCTGAGGTTGCAGTGG
1 TCTTATCCCCCTGAAGTTGCAGTGG
26722925 AGCAGATTGA
Statistics
Matches: 222, Mismatches: 16, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
217 4 0.02
218 216 0.97
219 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.28
Consensus pattern (218 bp):
TCTTATCCCCCTGAAGTTGCAGTGGGACAGATCGAAGATAGAAAATCTTATCTCTCTGAGGTTGT
AGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGGTTAAAGTAAT
AGATCTTATCTCTCTGAAGTTGAAGTAGAGTGGATCGCATCAGGTCTTATCCCCCTGAAGTTGCA
GCGGAGCAGACTGAGTAAGCAAA
Found at i:26723223 original size:129 final size:129
Alignment explanation
Indices: 26722900--26723223 Score: 381
Period size: 129 Copynumber: 2.5 Consensus size: 129
26722890 AAGAAGCAAA
** *** * * * * *
26722900 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCCTAAAGT---T
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACAGAAGAAAACAATCCTTTCTCCTTGAAGTCACA
26722962 GTGGAGCGGATTAAAGTAATAGATCTTATCACTCTGAAGTTGCAGTAGAGTGGATCGCATCAGG
66 GTGGAGCGGATTAAAGTAATAGATCTTATCACTCTGAAGTTGCAGTAGAGTGGATCGCATCAGG
** *** * ***
26723026 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCCGATAATCCTTTCTCCTTGAAGTTGTA
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACAGAAGAAAACAATCCTTTCTCCTTGAAGTCACA
* *
26723091 GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGTAGTAGAGTGGATCGCATCAGG
66 GTGGAGCGGATTAAAGTAATAGATCTTATCACTCTGAAGTTGCAGTAGAGTGGATCGCATCAGG
*
26723155 TCTTATCTCCTTGAGGTTGCAGTGGAGCAGACAG-AGAAAACAAGT-CTTATC-CCTCTGAAGTC
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACAGAAGAAAACAA-TCCTT-TCTCCT-TGAAGTC
26723217 ACAGTGG
63 ACAGTGG
26723224 GGCAGACTGA
Statistics
Matches: 176, Mismatches: 16, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
126 58 0.33
128 11 0.06
129 107 0.61
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (129 bp):
TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACAGAAGAAAACAATCCTTTCTCCTTGAAGTCACA
GTGGAGCGGATTAAAGTAATAGATCTTATCACTCTGAAGTTGCAGTAGAGTGGATCGCATCAGG
Found at i:26723246 original size:129 final size:128
Alignment explanation
Indices: 26722900--26723265 Score: 323
Period size: 129 Copynumber: 2.9 Consensus size: 128
26722890 AAGAAGCAAA
** *** * * * * *
26722900 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCCTAAAGT---T
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACAGAAGAAAACAATCCTTTCTCCTTGAAGTCACA
* * * * *
26722962 GTGGAGCGGATTAAAGTAATAGATCTTATCACTCTGAAGTTGCAGTAGAGTGGATCGCATCAGG
66 GTGGAGCAGATGAAAG-AACAAATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGG
** *** * ***
26723026 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCCGATAATCCTTTCTCCTTGAAGTTGTA
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACAGAAGAAAACAATCCTTTCTCCTTGAAGTCACA
* * * * *
26723091 GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGTAGTAGAGTGGATCGCATCAGG
66 GTGGAGCAGATGAAAG-AACAAATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGG
*
26723155 TCTTATCTCCTTGAGGTTGCAGTGGAGCAGACAG-AGAAAACAAGT-CTTATC-CCTCTGAAGTC
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACAGAAGAAAACAA-TCCTT-TCTCCT-TGAAGTC
* * *
26723217 ACAGTGGGGCAGACTGAAA-AAGCAAATCTTATCTCCCTGAGGTTGCAGT
63 ACAGTGGAGCAGA-TGAAAGAA-CAAATCTTATCTCTCTGAAGTTGCAGT
26723266 GGAGCAGATT
Statistics
Matches: 208, Mismatches: 24, Indels: 13
0.85 0.10 0.05
Matches are distributed among these distances:
126 58 0.28
128 13 0.06
129 133 0.64
130 4 0.02
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (128 bp):
TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACAGAAGAAAACAATCCTTTCTCCTTGAAGTCACA
GTGGAGCAGATGAAAGAACAAATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGG
Found at i:26723283 original size:217 final size:213
Alignment explanation
Indices: 26723026--26723493 Score: 742
Period size: 217 Copynumber: 2.2 Consensus size: 213
26723016 TCGCATCAGG
*
26723026 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCCGATAATCCTTTCTCCTTGAAGTTGTA
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCTTGAAGTTGTA
*
26723091 GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGTAGTAGAGTGGATCGCATCAGGT
66 GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTA-A----ATCGCATCAGGT
* * *
26723156 CTTATCTCCTTGAGGTTGCAGTGGAGCAGACAGAGAAAACAAGTCTTATCCCTCTGAAGTCACAG
126 CTTATCTCCCTGAGGTTGCAGTGGAGCAGACAGAGAAAACAACTCTTATCCCCCTGAAGTCACAG
26723221 TGGGGCAGACTGA-AAAAGCAAA
191 TGGGGCAGACTGAGAAAAGCAAA
26723243 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCTTGAAGTTGTA
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCTTGAAGTTGTA
*
26723308 GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAAATCGCATCAGGTCTTGT
66 GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAAATCGCATCAGGTCTTAT
* *
26723373 CTCCCTGAGGTTGCAGTGGAGCAGACTGAGAAAACAACTCTTATCCCCCTGAAGTTACAGTGGGG
131 CTCCCTGAGGTTGCAGTGGAGCAGACAGAGAAAACAACTCTTATCCCCCTGAAGTCACAGTGGGG
*
26723438 CAGACTGAGAATAGCAAA
196 CAGACTGAGAAAAGCAAA
* * * * *
26723456 TCTTATTTTCCTG-GCGGTGTAGTGGAACAGATTGAAGC
1 TCTTATCTCCCTGAG-GTTGCAGTGGAGCAGATTGAAGC
26723494 TACAACAGCA
Statistics
Matches: 235, Mismatches: 14, Indels: 8
0.91 0.05 0.03
Matches are distributed among these distances:
212 85 0.36
213 39 0.17
216 1 0.00
217 110 0.47
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (213 bp):
TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCTTGAAGTTGTA
GTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAAATCGCATCAGGTCTTAT
CTCCCTGAGGTTGCAGTGGAGCAGACAGAGAAAACAACTCTTATCCCCCTGAAGTCACAGTGGGG
CAGACTGAGAAAAGCAAA
Found at i:26723901 original size:26 final size:26
Alignment explanation
Indices: 26723867--26723916 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
26723857 AAACAGATCC
* *
26723867 CAAATACCCACTTAACCTAGCCCAAA
1 CAAAAACCCAATTAACCTAGCCCAAA
26723893 CAAAAACCCAATTAACCTAGCCCA
1 CAAAAACCCAATTAACCTAGCCCA
26723917 GCTAATGTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.44, C:0.38, G:0.04, T:0.14
Consensus pattern (26 bp):
CAAAAACCCAATTAACCTAGCCCAAA
Found at i:26726917 original size:17 final size:18
Alignment explanation
Indices: 26726873--26726909 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
26726863 TATACGTACT
26726873 ATTCA-ATTTTGTCCAAA
1 ATTCACATTTTGTCCAAA
26726890 ATTCACATTTT-TCCAAA
1 ATTCACATTTTGTCCAAA
26726907 ATT
1 ATT
26726910 ATAGTTTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.35, C:0.19, G:0.03, T:0.43
Consensus pattern (18 bp):
ATTCACATTTTGTCCAAA
Found at i:26727363 original size:36 final size:36
Alignment explanation
Indices: 26727323--26727395 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
26727313 AAGGGAGATA
26727323 TAACCGAATGCTCAATGTGCAAAAATGGAGAATTCT
1 TAACCGAATGCTCAATGTGCAAAAATGGAGAATTCT
26727359 TAACCGAATGCTCAATGTGCAAAAATGGAGAATTCT
1 TAACCGAATGCTCAATGTGCAAAAATGGAGAATTCT
26727395 T
1 T
26727396 CCTTTCTCAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.26
Consensus pattern (36 bp):
TAACCGAATGCTCAATGTGCAAAAATGGAGAATTCT
Found at i:26729616 original size:21 final size:21
Alignment explanation
Indices: 26729592--26729640 Score: 98
Period size: 21 Copynumber: 2.3 Consensus size: 21
26729582 AAACTCTAAA
26729592 TCGTGTGTCGGATAATTCTTT
1 TCGTGTGTCGGATAATTCTTT
26729613 TCGTGTGTCGGATAATTCTTT
1 TCGTGTGTCGGATAATTCTTT
26729634 TCGTGTG
1 TCGTGTG
26729641 GTTTCAACTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.12, C:0.14, G:0.27, T:0.47
Consensus pattern (21 bp):
TCGTGTGTCGGATAATTCTTT
Found at i:26732044 original size:18 final size:19
Alignment explanation
Indices: 26732018--26732054 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
26732008 AATTTTGGAA
*
26732018 TGGATAGAAGAGA-GAAAG
1 TGGAAAGAAGAGAGGAAAG
26732036 TGGAAAGAAGAGAGGAAAG
1 TGGAAAGAAGAGAGGAAAG
26732055 ATGTGAATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.51, C:0.00, G:0.41, T:0.08
Consensus pattern (19 bp):
TGGAAAGAAGAGAGGAAAG
Found at i:26735475 original size:22 final size:22
Alignment explanation
Indices: 26735444--26735486 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
26735434 ATTAAATAGT
*
26735444 TAAATTAAAATTTACGAGAAAC
1 TAAATAAAAATTTACGAGAAAC
*
26735466 TAAATAAAAATTTAGGAGAAA
1 TAAATAAAAATTTACGAGAAA
26735487 AATTGGTCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.58, C:0.05, G:0.12, T:0.26
Consensus pattern (22 bp):
TAAATAAAAATTTACGAGAAAC
Found at i:26736101 original size:87 final size:87
Alignment explanation
Indices: 26735999--26736172 Score: 348
Period size: 87 Copynumber: 2.0 Consensus size: 87
26735989 TTAAATTAAA
26735999 ACTAATCCTAACTCTAAATAAAGCTGATAATAATTAATATATATTATAATGGATATAATTATATA
1 ACTAATCCTAACTCTAAATAAAGCTGATAATAATTAATATATATTATAATGGATATAATTATATA
26736064 TTAATAATTATCATCTTTTCTT
66 TTAATAATTATCATCTTTTCTT
26736086 ACTAATCCTAACTCTAAATAAAGCTGATAATAATTAATATATATTATAATGGATATAATTATATA
1 ACTAATCCTAACTCTAAATAAAGCTGATAATAATTAATATATATTATAATGGATATAATTATATA
26736151 TTAATAATTATCATCTTTTCTT
66 TTAATAATTATCATCTTTTCTT
26736173 TTCTTTTTTT
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 87 1.00
ACGTcount: A:0.43, C:0.10, G:0.05, T:0.43
Consensus pattern (87 bp):
ACTAATCCTAACTCTAAATAAAGCTGATAATAATTAATATATATTATAATGGATATAATTATATA
TTAATAATTATCATCTTTTCTT
Found at i:26739587 original size:50 final size:50
Alignment explanation
Indices: 26739461--26739646 Score: 171
Period size: 50 Copynumber: 3.7 Consensus size: 50
26739451 AATAATAACA
* * * *
26739461 TGCCAAAGCCATGT-CCATGACATGGTCTTACATGGGATGTTTTC-TGT-AC
1 TGCCAATGCCATGTCCCA-GACATGGTCTTACATGGGA-GTTCTCATATCAG
* * * *
26739510 TGCCAATGCCATATCCCAAATATGGTCTTACATTGGAGTTCTCATATCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCAG
* * ** ** * *
26739560 TGCCCATGCTATGTCCCAGACATGGTCTTACGGGGGACATCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCAG
* *
26739610 TGCCAACGCCATGTCCCAGACATGGTTTTACATGGGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
26739647 CCTCTTTACC
Statistics
Matches: 108, Mismatches: 26, Indels: 5
0.78 0.19 0.04
Matches are distributed among these distances:
48 5 0.05
49 30 0.28
50 73 0.68
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCAG
Found at i:26746026 original size:39 final size:40
Alignment explanation
Indices: 26745966--26746134 Score: 173
Period size: 39 Copynumber: 4.3 Consensus size: 40
26745956 ACTAAGATCT
*
26745966 GAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCCCC
1 GAAGGCATTTGTGCGAGATACAAAATCCGGGTTAAGCCCC
* *
26746006 GAAGGCCTTT-TGCGAGATACAAAATCCGGGTTAAGTCCC
1 GAAGGCATTTGTGCGAGATACAAAATCCGGGTTAAGCCCC
* * *** * *
26746045 GAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCC
1 GAAGGCATTTGTGCGAGATACAAAATCCGGGTTAAGCCCC
* * * * *
26746085 GAAGGCA-TTGTGTGAGTTACTAAAA-CCGGGCTATGTCCC
1 GAAGGCATTTGTGCGAGATAC-AAAATCCGGGTTAAGCCCC
26746124 GAAGGCATTTG
1 GAAGGCATTTG
26746135 AACGAGGAGC
Statistics
Matches: 110, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 64 0.58
40 46 0.42
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
GAAGGCATTTGTGCGAGATACAAAATCCGGGTTAAGCCCC
Found at i:26746053 original size:79 final size:79
Alignment explanation
Indices: 26745966--26746134 Score: 198
Period size: 79 Copynumber: 2.1 Consensus size: 79
26745956 ACTAAGATCT
* *
26745966 GAAGGCATTTGTGCGAGAT-ACAAATTCCGGGTTAAGCCCCGAAGGCCTTTTGCGAGATAC-AAA
1 GAAGGCATTTGTGCGAGATGACAAA-TCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
*
26746029 ATCCGGGTTAAGTCCC
65 A-CCGGGCTAAGTCCC
* * ** * * * *
26746045 GAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAA
1 GAAGGCATTTGTGCGAGATGACAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAAA
*
26746110 CCGGGCTATGTCCC
66 CCGGGCTAAGTCCC
26746124 GAAGGCATTTG
1 GAAGGCATTTG
26746135 AACGAGGAGC
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
79 68 0.91
80 7 0.09
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGATGACAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAAA
CCGGGCTAAGTCCC
Found at i:26746152 original size:79 final size:79
Alignment explanation
Indices: 26745991--26746167 Score: 187
Period size: 79 Copynumber: 2.3 Consensus size: 79
26745981 AGATACAAAT
* * * *
26745991 TCCGGGTTAAGCCCCGAAGGCCTTTTGCGAGATACAAAATCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACAAAATCCGGGCTAAGTCCCGAAGGCATTCG
** ** *
26746056 TGCGAGTTGTTAAA
66 AACGAGGAGCTAAA
* * * * *
26746070 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAA-CCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATAC-AAAATCCGGGCTAAGTCCCGAAGGCATTC
*
26746134 GAACGAGGAGCTATA
65 GAACGAGGAGCTAAA
*
26746149 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
26746168 TACGTGATTT
Statistics
Matches: 80, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
78 14 0.17
79 62 0.77
80 4 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACAAAATCCGGGCTAAGTCCCGAAGGCATTCG
AACGAGGAGCTAAA
Found at i:26750263 original size:50 final size:50
Alignment explanation
Indices: 26750184--26750321 Score: 132
Period size: 50 Copynumber: 2.8 Consensus size: 50
26750174 TTTTCTGTAC
* * * * * * **
26750184 TGCCAATGCCATATCCCAAATATGGTCTTACACTGGAGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATCGTCTTACACGGGACATCTCATATCGG
* * * ** *
26750234 TGCCCATGCTATGTCCCAGACATCGTCTTACGGGGGACATCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATCGTCTTACACGGGACATCTCATATCGG
* *
26750284 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGAC
1 TGCCAACGCCATGTCCCAGACATCGTCTTACACGGGAC
26750322 CTCTTTACCC
Statistics
Matches: 70, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
50 70 1.00
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATCGTCTTACACGGGACATCTCATATCGG
Found at i:26757338 original size:12 final size:13
Alignment explanation
Indices: 26757321--26757352 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
26757311 ACGAGATTGT
26757321 AAAAAAATT-GAA
1 AAAAAAATTCGAA
26757333 AAAAAAATTCGAA
1 AAAAAAATTCGAA
26757346 AAAAAAA
1 AAAAAAA
26757353 ATTTTTGTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 9 0.47
13 10 0.53
ACGTcount: A:0.78, C:0.03, G:0.06, T:0.12
Consensus pattern (13 bp):
AAAAAAATTCGAA
Found at i:26759475 original size:15 final size:15
Alignment explanation
Indices: 26759438--26759488 Score: 68
Period size: 15 Copynumber: 3.5 Consensus size: 15
26759428 TCGAGCGAGA
*
26759438 AAAAGAAAAAGAGAG
1 AAAAGAAAAAGAGTG
*
26759453 -AAACAAAAAGAGTG
1 AAAAGAAAAAGAGTG
*
26759467 AAAAGAAAAAGAATG
1 AAAAGAAAAAGAGTG
26759482 AAAAGAA
1 AAAAGAA
26759489 TGATGAAAGT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
14 12 0.39
15 19 0.61
ACGTcount: A:0.73, C:0.02, G:0.22, T:0.04
Consensus pattern (15 bp):
AAAAGAAAAAGAGTG
Found at i:26768267 original size:7 final size:7
Alignment explanation
Indices: 26768255--26768422 Score: 67
Period size: 7 Copynumber: 23.7 Consensus size: 7
26768245 ACCAATTAAT
26768255 CTAAACC
1 CTAAACC
26768262 CTAAACC
1 CTAAACC
26768269 CTAAACC
1 CTAAACC
26768276 CTAAACCC
1 CTAAA-CC
*
26768284 CT-ACCC
1 CTAAACC
*
26768290 CTTAACTC
1 CTAAAC-C
*
26768298 CT-ATCTC
1 CTAAAC-C
26768305 CTAAACC
1 CTAAACC
*
26768312 CTAAATC
1 CTAAACC
* *
26768319 ATAAAAC
1 CTAAACC
*
26768326 ATAAACC
1 CTAAACC
26768333 CT-AACTC
1 CTAAAC-C
26768340 CTAAACC
1 CTAAACC
* *
26768347 CATGACCC
1 C-TAAACC
* *
26768355 CTAATCT
1 CTAAACC
* *
26768362 CTAATCT
1 CTAAACC
26768369 CT-AACC
1 CTAAACC
26768375 CTTAAACC
1 C-TAAACC
*
26768383 TTAAACC
1 CTAAACC
*
26768390 C-CAACC
1 CTAAACC
*
26768396 CTTAAATC
1 C-TAAACC
*
26768404 ATAAACC
1 CTAAACC
* *
26768411 ATAATCC
1 CTAAACC
26768418 CTAAA
1 CTAAA
26768423 ACTATAATCC
Statistics
Matches: 124, Mismatches: 26, Indels: 22
0.72 0.15 0.13
Matches are distributed among these distances:
6 15 0.12
7 85 0.69
8 24 0.19
ACGTcount: A:0.39, C:0.38, G:0.01, T:0.23
Consensus pattern (7 bp):
CTAAACC
Found at i:26768751 original size:21 final size:21
Alignment explanation
Indices: 26768727--26768767 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
26768717 AACACTAAAT
* *
26768727 CCCTAGCTCTTAACCTCTAAC
1 CCCTAACTCTTAACCCCTAAC
26768748 CCCTAACTCTTAACCCCTAA
1 CCCTAACTCTTAACCCCTAA
26768768 ACCTTAAATC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.44, G:0.02, T:0.27
Consensus pattern (21 bp):
CCCTAACTCTTAACCCCTAAC
Found at i:26768773 original size:14 final size:13
Alignment explanation
Indices: 26768737--26768788 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 13
26768727 CCCTAGCTCT
26768737 TAACCTCTAACCCC
1 TAACCT-TAACCCC
26768751 TAACTCTTAACCCC
1 TAAC-CTTAACCCC
**
26768765 TAAACCTTAAATCC
1 T-AACCTTAACCCC
26768779 TAACACTTAA
1 TAAC-CTTAA
26768789 ACCATAATCC
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
13 3 0.09
14 25 0.76
15 5 0.15
ACGTcount: A:0.37, C:0.37, G:0.00, T:0.27
Consensus pattern (13 bp):
TAACCTTAACCCC
Found at i:26768782 original size:21 final size:21
Alignment explanation
Indices: 26768758--26768839 Score: 60
Period size: 21 Copynumber: 3.9 Consensus size: 21
26768748 CCCTAACTCT
26768758 TAACCCCTAAACCTTAAATCC
1 TAACCCCTAAACCTTAAATCC
* * *
26768779 TAACACTTAAACCAT-AATCCC
1 TAACCCCTAAACCTTAAAT-CC
* * * *
26768800 TAATCCATAATCCCTAAATCC
1 TAACCCCTAAACCTTAAATCC
26768821 -ATACTCCCTAAACCTTAAA
1 TA-AC-CCCTAAACCTTAAA
26768840 ATATGAACTC
Statistics
Matches: 45, Mismatches: 12, Indels: 7
0.70 0.19 0.11
Matches are distributed among these distances:
20 4 0.09
21 27 0.60
22 14 0.31
ACGTcount: A:0.40, C:0.34, G:0.00, T:0.26
Consensus pattern (21 bp):
TAACCCCTAAACCTTAAATCC
Found at i:26768807 original size:14 final size:14
Alignment explanation
Indices: 26768790--26768831 Score: 66
Period size: 14 Copynumber: 2.9 Consensus size: 14
26768780 AACACTTAAA
26768790 CCATAATCCCTAAT
1 CCATAATCCCTAAT
26768804 CCATAATCCCTAAAT
1 CCATAATCCCT-AAT
*
26768819 CCATACTCCCTAA
1 CCATAATCCCTAA
26768832 ACCTTAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
14 13 0.50
15 13 0.50
ACGTcount: A:0.36, C:0.38, G:0.00, T:0.26
Consensus pattern (14 bp):
CCATAATCCCTAAT
Found at i:26768821 original size:15 final size:15
Alignment explanation
Indices: 26768786--26768832 Score: 71
Period size: 15 Copynumber: 3.3 Consensus size: 15
26768776 TCCTAACACT
26768786 TAAA-CCATAATCCC
1 TAAATCCATAATCCC
26768800 T-AATCCATAATCCC
1 TAAATCCATAATCCC
*
26768814 TAAATCCATACTCCC
1 TAAATCCATAATCCC
26768829 TAAA
1 TAAA
26768833 CCTTAAAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
13 2 0.07
14 12 0.40
15 16 0.53
ACGTcount: A:0.40, C:0.34, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAATCCATAATCCC
Found at i:26768945 original size:295 final size:295
Alignment explanation
Indices: 26768611--26769194 Score: 851
Period size: 295 Copynumber: 2.0 Consensus size: 295
26768601 CAATATATTT
26768611 AATTTATTATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATTAAAAAAATAAT
1 AATTTATTATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATT-AAAAAATAAT
* *
26768676 TAATCTAAACCCAAAACCCTAACTTGACCCTTGAATCCCTAAACACTAAATCCCTAGCTCTTAAC
65 TAATCTAAACCCAAAACCCTAACTTGACCC-TGAATACCTAAACACTAAATCCCTAACTCTTAAC
* * *
26768741 CTCTAACCCCTAACTCTT-AACCCCTAAACCT-TAAATCC-T-AACACTTAAA-CCATAATCCC-
129 CCCTAACCCCTAACCCTTAAACCCCTAAACCTCTAAA-CCTTAAAC-CTTAAATCC-CAA-CCCT
* *
26768800 TAATCCATAATCCCTAAATCCATACTCCCTAAACCTTAAAATA-TGAACTCCTAAA-CTGGTCTT
190 TAAACCATAATCCCTAAATCCATACTCCCTAAACCTTAAAATAGT-AACTCCTAAATC-GGCCTT
** **
26768863 AAATCTTAAATTTATCATATACCCTAAATTAAAAACCAAAAAA
253 AAATCTTAAATAAATCATATACCCTAAACCAAAAACCAAAAAA
* *
26768906 AATTTATTATTATCTCTTTTACAATTATATAATAACATATTTAAAATATAAGTTAAAAAATAATT
1 AATTTATTATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATTAAAAAATAATT
* *
26768971 AATCTAAACCCAAAACCCTAACTTGACCCTGAATACCTAAACCCTAAATCCTTAACTCTTAACCC
66 AATCTAAACCCAAAACCCTAACTTGACCCTGAATACCTAAACACTAAATCCCTAACTCTTAACCC
*** *
26769036 CTAATGTCTAACCCTTAAACCTCTAAACCTCTAAACCTTAAACCTTAAATCCCAACCCTTAAACC
131 CTAACCCCTAACCCTTAAACCCCTAAACCTCTAAACCTTAAACCTTAAATCCCAACCCTTAAACC
*
26769101 ATAATCCCTAAATCCATACTCCCTAAACCTTAAAATAGTAACTCTTAAATCGGCCTTAAATCTTA
196 ATAATCCCTAAATCCATACTCCCTAAACCTTAAAATAGTAACTCCTAAATCGGCCTTAAATCTTA
*
26769166 AATAAATCATATACCTTAAACCAAAAACC
261 AATAAATCATATACCCTAAACCAAAAACC
26769195 CTAAACTATA
Statistics
Matches: 260, Mismatches: 21, Indels: 16
0.88 0.07 0.05
Matches are distributed among these distances:
293 43 0.17
294 57 0.22
295 153 0.59
296 7 0.03
ACGTcount: A:0.42, C:0.25, G:0.02, T:0.30
Consensus pattern (295 bp):
AATTTATTATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATTAAAAAATAATT
AATCTAAACCCAAAACCCTAACTTGACCCTGAATACCTAAACACTAAATCCCTAACTCTTAACCC
CTAACCCCTAACCCTTAAACCCCTAAACCTCTAAACCTTAAACCTTAAATCCCAACCCTTAAACC
ATAATCCCTAAATCCATACTCCCTAAACCTTAAAATAGTAACTCCTAAATCGGCCTTAAATCTTA
AATAAATCATATACCCTAAACCAAAAACCAAAAAA
Found at i:26769062 original size:8 final size:7
Alignment explanation
Indices: 26769048--26769084 Score: 56
Period size: 8 Copynumber: 5.0 Consensus size: 7
26769038 AATGTCTAAC
26769048 CCTTAAA
1 CCTTAAA
26769055 CCTCTAAA
1 CCT-TAAA
26769063 CCTCTAAA
1 CCT-TAAA
26769071 CCTTAAA
1 CCTTAAA
26769078 CCTTAAA
1 CCTTAAA
26769085 TCCCAACCCT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
7 14 0.48
8 15 0.52
ACGTcount: A:0.41, C:0.32, G:0.00, T:0.27
Consensus pattern (7 bp):
CCTTAAA
Found at i:26769074 original size:23 final size:23
Alignment explanation
Indices: 26769008--26769100 Score: 81
Period size: 21 Copynumber: 4.3 Consensus size: 23
26768998 CCTGAATACC
* *
26769008 TAAACCCTAAATCCT-TAACTCT
1 TAAACCTTAAATCCTCTAACCCT
* * *
26769030 TAACCCCT-AAT-GTCTAACCCT
1 TAAACCTTAAATCCTCTAACCCT
*
26769051 TAAACCTCTAAA-CCTCTAAACCT
1 TAAACCT-TAAATCCTCTAACCCT
26769074 TAAACCTTAAATCC-C-AACCCT
1 TAAACCTTAAATCCTCTAACCCT
26769095 TAAACC
1 TAAACC
26769101 ATAATCCCTA
Statistics
Matches: 58, Mismatches: 8, Indels: 11
0.75 0.10 0.14
Matches are distributed among these distances:
20 1 0.02
21 25 0.43
22 13 0.22
23 19 0.33
ACGTcount: A:0.37, C:0.35, G:0.01, T:0.27
Consensus pattern (23 bp):
TAAACCTTAAATCCTCTAACCCT
Found at i:26769117 original size:15 final size:14
Alignment explanation
Indices: 26769095--26769129 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
26769085 TCCCAACCCT
26769095 TAAACCATAATCCC
1 TAAACCATAATCCC
*
26769109 TAAATCCATACTCCC
1 TAAA-CCATAATCCC
26769124 TAAACC
1 TAAACC
26769130 TTAAAATAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.40, C:0.37, G:0.00, T:0.23
Consensus pattern (14 bp):
TAAACCATAATCCC
Found at i:26769363 original size:23 final size:25
Alignment explanation
Indices: 26769336--26769390 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
26769326 TAAATGATAG
*
26769336 TATTTTAATT-TTTCCATGTGT-TT
1 TATTTTAATTATTTCCATGTGTCAT
* *
26769359 TATTTCAAATTATTTCTATGTGTCAT
1 TATTT-TAATTATTTCCATGTGTCAT
26769385 TATTTT
1 TATTTT
26769391 GTTCTGAAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
23 5 0.20
24 4 0.16
25 10 0.40
26 6 0.24
ACGTcount: A:0.22, C:0.09, G:0.07, T:0.62
Consensus pattern (25 bp):
TATTTTAATTATTTCCATGTGTCAT
Found at i:26769535 original size:41 final size:41
Alignment explanation
Indices: 26769475--26769720 Score: 273
Period size: 41 Copynumber: 6.0 Consensus size: 41
26769465 TAAAATGTTT
* * *
26769475 TTAGCGGCGCTTTTTC-AAAAACGCCACTAAAGCCCCTAGCA
1 TTAGCGGCGC-TTTTCAAAAAACGCCGCTAAAACCCCGAGCA
* * *
26769516 TTAGCGGCGCTTTTCCAAAAATGCCGCTAAAGCCCCGAGCA
1 TTAGCGGCGCTTTTCAAAAAACGCCGCTAAAACCCCGAGCA
* * *
26769557 TTAGTGGAGC-TTTCTAAAAAATGCCGCTAAAACCCCGAGCA
1 TTAGCGGCGCTTTTC-AAAAAACGCCGCTAAAACCCCGAGCA
* *
26769598 TTAGTGGTGC-TTTCTAAAAAACGCCGCTAAAACCCCGAGCA
1 TTAGCGGCGCTTTTC-AAAAAACGCCGCTAAAACCCCGAGCA
* * *
26769639 TTAGCGGCGCTTTTTAAAAAATGCCGCTAAAACACCGAGCA
1 TTAGCGGCGCTTTTCAAAAAACGCCGCTAAAACCCCGAGCA
** * * *
26769680 TTAGCGGCGCTTTTTTAAAAACACCGCTAAAGCCCCCAGCA
1 TTAGCGGCGCTTTTCAAAAAACGCCGCTAAAACCCCGAGCA
26769721 CAAAAACGCC
Statistics
Matches: 182, Mismatches: 20, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
40 9 0.05
41 170 0.93
42 3 0.02
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (41 bp):
TTAGCGGCGCTTTTCAAAAAACGCCGCTAAAACCCCGAGCA
Found at i:26769707 original size:123 final size:119
Alignment explanation
Indices: 26769487--26769883 Score: 381
Period size: 123 Copynumber: 3.4 Consensus size: 119
26769477 AGCGGCGCTT
* * ** * *
26769487 TTTC-AAAAACGCCACTAAAGCCCCTAGCATTAGCGGCGCTTTTCCAAAAATGCCGCTAAAGCCC
1 TTTCTAAAAACGCCGCTAAAACCCCTAGCATTAGCGGCGCTTTTTAAAAAATGCCGCTAAAACAC
* * *
26769551 CGAGCATTAGTGGAGCTTTCTAAAAAATGCCGCTAAAACCCCGAGCATTAGTGGTGC
66 CGAGCATTAGCGGCGCTTTTTAAAAAATGCCGCTAAAACCCC-AGCATTAG-GG-GC
*
26769608 TTTCTAAAAAACGCCGCTAAAACCCCGAGCATTAGCGGCGCTTTTTAAAAAATGCCGCTAAAACA
1 TTTCT-AAAAACGCCGCTAAAACCCCTAGCATTAGCGGCGCTTTTTAAAAAATGCCGCTAAAACA
* ** *
26769673 CCGAGCATTAGCGGCGCTTTTTTAAAAACACCGCTAAAGCCCC--C---A---GC
65 CCGAGCATTAGCGGCGCTTTTTAAAAAATGCCGCTAAAACCCCAGCATTAGGGGC
* * *
26769720 --AC-AAAAACGCCTCTAAAACCCCTAGCATTAGCGGCGCTTTTTAAAAAATGCTGCTAAAACAC
1 TTTCTAAAAACGCCGCTAAAACCCCTAGCATTAGCGGCGCTTTTTAAAAAATGCCGCTAAAACAC
* * * **
26769782 CGAACATTAGCGACGC-TTTTCAAAAATGCCATTAAAACCCCAAGCATTAGAGGCGC
66 CGAGCATTAGCGGCGCTTTTTAAAAAATGCCGCTAAAACCCC-AGCATTAG-GG-GC
* * * *
26769838 ATTT-TCAAAAACACCGCTAAAGCCCCAAGCATTAGCGACGCTTTTT
1 -TTTCT-AAAAACGCCGCTAAAACCCCTAGCATTAGCGGCGCTTTTT
26769884 TGAAAACACC
Statistics
Matches: 226, Mismatches: 32, Indels: 35
0.77 0.11 0.12
Matches are distributed among these distances:
107 19 0.08
108 71 0.31
110 2 0.01
112 2 0.01
113 1 0.00
117 1 0.00
118 2 0.01
120 1 0.00
121 4 0.02
122 35 0.15
123 88 0.39
ACGTcount: A:0.34, C:0.28, G:0.17, T:0.21
Consensus pattern (119 bp):
TTTCTAAAAACGCCGCTAAAACCCCTAGCATTAGCGGCGCTTTTTAAAAAATGCCGCTAAAACAC
CGAGCATTAGCGGCGCTTTTTAAAAAATGCCGCTAAAACCCCAGCATTAGGGGC
Found at i:26769726 original size:26 final size:26
Alignment explanation
Indices: 26769696--26769746 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
26769686 GCGCTTTTTT
*
26769696 AAAAACACCGCTAAAGCCCCCAGCAC
1 AAAAACACCGCTAAAACCCCCAGCAC
* * *
26769722 AAAAACGCCTCTAAAACCCCTAGCA
1 AAAAACACCGCTAAAACCCCCAGCA
26769747 TTAGCGGCGC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.43, C:0.39, G:0.10, T:0.08
Consensus pattern (26 bp):
AAAAACACCGCTAAAACCCCCAGCAC
Found at i:26769767 original size:41 final size:41
Alignment explanation
Indices: 26769721--26769883 Score: 163
Period size: 41 Copynumber: 4.0 Consensus size: 41
26769711 GCCCCCAGCA
* *
26769721 CAAAAACGCCTCTAAAACCCCTAGCATTAGCGGCGCTTTTT
1 CAAAAACGCCTCTAAAACCCCAAGCATTAGCGACGCTTTTT
* * *
26769762 AAAAAATG-CTGCTAAAACACCGAA-CATTAGCGACGC-TTTT
1 CAAAAACGCCT-CTAAAAC-CCCAAGCATTAGCGACGCTTTTT
* * * *
26769802 CAAAAATGCCAT-TAAAACCCCAAGCATTAGAGGCGCATTTT
1 CAAAAACGCC-TCTAAAACCCCAAGCATTAGCGACGCTTTTT
* * *
26769843 CAAAAACACCGCTAAAGCCCCAAGCATTAGCGACGCTTTTT
1 CAAAAACGCCTCTAAAACCCCAAGCATTAGCGACGCTTTTT
26769884 TGAAAACACC
Statistics
Matches: 99, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
39 4 0.04
40 29 0.29
41 62 0.63
42 4 0.04
ACGTcount: A:0.36, C:0.28, G:0.15, T:0.22
Consensus pattern (41 bp):
CAAAAACGCCTCTAAAACCCCAAGCATTAGCGACGCTTTTT
Found at i:26769829 original size:81 final size:81
Alignment explanation
Indices: 26769733--26769882 Score: 203
Period size: 81 Copynumber: 1.9 Consensus size: 81
26769723 AAAACGCCTC
* * * ** * *
26769733 TAAAACCCCTAGCATTAGCGGCGCTTTTTAAAAAATGCTGCTAAAACACCGAA-CATTAGCGACG
1 TAAAACCCCAAGCATTAGAGGCGCATTTTAAAAAACACCGCTAAAAC-CCCAAGCATTAGCGACG
26769797 CTTTTCAAAAATGCCAT
65 CTTTTCAAAAATGCCAT
* *
26769814 TAAAACCCCAAGCATTAGAGGCGCATTTTCAAAAACACCGCTAAAGCCCCAAGCATTAGCGACGC
1 TAAAACCCCAAGCATTAGAGGCGCATTTTAAAAAACACCGCTAAAACCCCAAGCATTAGCGACGC
26769879 TTTT
66 TTTT
26769883 TTGAAAACAC
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
80 4 0.07
81 55 0.93
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.23
Consensus pattern (81 bp):
TAAAACCCCAAGCATTAGAGGCGCATTTTAAAAAACACCGCTAAAACCCCAAGCATTAGCGACGC
TTTTCAAAAATGCCAT
Found at i:26769874 original size:189 final size:190
Alignment explanation
Indices: 26769531--26769904 Score: 471
Period size: 189 Copynumber: 2.0 Consensus size: 190
26769521 GGCGCTTTTC
* * * * *
26769531 CAAAAATGCCGCTAAAGCCCCGAGCATTAGTGGAGCTTTCTAAAAAATGCCGCTAAAACCCCGAG
1 CAAAAACGCCGCTAAAACCCCGAGCATTAGCGGAGCTTTCTAAAAAATGCCGCTAAAACACCGAA
* ** * * * * *
26769596 CATTAGTGGTGCTTTCTAAAAAACGCCGCTAAAACCCCGAGCATTAGCGGCGCTTTTTAAAAAAT
66 CATTAGCGACGCTTTCTAAAAAACGCCACTAAAACCCCAAGCATTAGAGGCGCATTTTAAAAAAC
* * * * *
26769661 GCCGCTAAAACACCGAGCATTAGCGGCGCTTTTTTAAAAACACCGCTAAAGCCCCCAGCA
131 ACCGCTAAAACACCAAGCATTAGCGACGCTTTTTTAAAAACACCGCCAAAACCCCCAGCA
* * * * *
26769721 CAAAAACGCCTCTAAAACCCCTAGCATTAGCGGCGCTTTTTAAAAAATGCTGCTAAAACACCGAA
1 CAAAAACGCCGCTAAAACCCCGAGCATTAGCGGAGCTTTCTAAAAAATGCCGCTAAAACACCGAA
* * * *
26769786 CATTAGCGACGCTTT-TCAAAAATGCCATTAAAACCCCAAGCATTAGAGGCGCATTTTCAAAAAC
66 CATTAGCGACGCTTTCTAAAAAACGCCACTAAAACCCCAAGCATTAGAGGCGCATTTTAAAAAAC
* * *
26769850 ACCGCTAAAGCCCCAAGCATTAGCGACGCTTTTTTGAAAACACCGCCAAAACCCC
131 ACCGCTAAAACACCAAGCATTAGCGACGCTTTTTTAAAAACACCGCCAAAACCCC
26769905 GAAAGGTAAG
Statistics
Matches: 154, Mismatches: 30, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
189 87 0.56
190 67 0.44
ACGTcount: A:0.35, C:0.29, G:0.17, T:0.20
Consensus pattern (190 bp):
CAAAAACGCCGCTAAAACCCCGAGCATTAGCGGAGCTTTCTAAAAAATGCCGCTAAAACACCGAA
CATTAGCGACGCTTTCTAAAAAACGCCACTAAAACCCCAAGCATTAGAGGCGCATTTTAAAAAAC
ACCGCTAAAACACCAAGCATTAGCGACGCTTTTTTAAAAACACCGCCAAAACCCCCAGCA
Found at i:26769890 original size:41 final size:41
Alignment explanation
Indices: 26769721--26769904 Score: 138
Period size: 41 Copynumber: 4.5 Consensus size: 41
26769711 GCCCCCAGCA
* * * * * *
26769721 CAAAAACGCCTCTAAAACCCCTAGCATTAGCGGCGCTTTTT
1 CAAAAACACCGCTAAAACCCCAAGCATTAGAGACGCATTTT
* ** * * *
26769762 AAAAAATGCTGCTAAAACACCGAA-CATTAGCGACGC-TTTT
1 CAAAAACACCGCTAAAAC-CCCAAGCATTAGAGACGCATTTT
** ** *
26769802 CAAAAATGCCATTAAAACCCCAAGCATTAGAGGCGCATTTT
1 CAAAAACACCGCTAAAACCCCAAGCATTAGAGACGCATTTT
* * *
26769843 CAAAAACACCGCTAAAGCCCCAAGCATTAGCGACGCTTTTT
1 CAAAAACACCGCTAAAACCCCAAGCATTAGAGACGCATTTT
** *
26769884 TGAAAACACCGCCAAAACCCC
1 CAAAAACACCGCTAAAACCCC
26769905 GAAAGGTAAG
Statistics
Matches: 114, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
39 4 0.04
40 28 0.25
41 79 0.69
42 3 0.03
ACGTcount: A:0.36, C:0.29, G:0.14, T:0.20
Consensus pattern (41 bp):
CAAAAACACCGCTAAAACCCCAAGCATTAGAGACGCATTTT
Found at i:26793620 original size:3 final size:3
Alignment explanation
Indices: 26793612--26793651 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
26793602 TTGAAAAAGG
* * *
26793612 TTC TTC TTC ATC TTA TTC TTC TTA TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
26793652 GTAAATGTTA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.07, C:0.28, G:0.00, T:0.65
Consensus pattern (3 bp):
TTC
Found at i:26808471 original size:39 final size:40
Alignment explanation
Indices: 26808355--26808474 Score: 152
Period size: 40 Copynumber: 3.0 Consensus size: 40
26808345 AATTATTGAA
* *
26808355 TGAATACACATATGTGCCCCTGTTTGTACTTCGGTACCCC
1 TGAATGCACATATGTGCCCCTGTTTATACTTCGGTACCCC
* * *
26808395 AGAATGCACATACGTGCCCCTGTTTATACTGCGGTACCCC
1 TGAATGCACATATGTGCCCCTGTTTATACTTCGGTACCCC
* * **
26808435 TTAAT-CACATATATGCCCCTGTTTATACTTTAGTACCCC
1 TGAATGCACATATGTGCCCCTGTTTATACTTCGGTACCCC
26808474 T
1 T
26808475 AAAAACACAT
Statistics
Matches: 68, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
39 30 0.44
40 38 0.56
ACGTcount: A:0.23, C:0.30, G:0.15, T:0.33
Consensus pattern (40 bp):
TGAATGCACATATGTGCCCCTGTTTATACTTCGGTACCCC
Found at i:26809560 original size:28 final size:29
Alignment explanation
Indices: 26809529--26809600 Score: 119
Period size: 28 Copynumber: 2.5 Consensus size: 29
26809519 TTAGATATTA
*
26809529 TTAAATATGTCCTAATTAGTTTAAGT-TT
1 TTAAATATGTCCTAATTAGTTCAAGTGTT
*
26809557 TTAAATATTTCCTAATTAGTTCAAGTGTT
1 TTAAATATGTCCTAATTAGTTCAAGTGTT
26809586 TTAAATATGTCCTAA
1 TTAAATATGTCCTAA
26809601 ACTAATACAT
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 24 0.60
29 16 0.40
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.47
Consensus pattern (29 bp):
TTAAATATGTCCTAATTAGTTCAAGTGTT
Found at i:26814284 original size:29 final size:29
Alignment explanation
Indices: 26814250--26814322 Score: 137
Period size: 29 Copynumber: 2.5 Consensus size: 29
26814240 TTAGATATTA
*
26814250 TTAAATATGTCCTAATTAGTTTAAGTGTT
1 TTAAATATGTCCTAATTAGTTCAAGTGTT
26814279 TTAAATATGTCCTAATTAGTTCAAGTGTT
1 TTAAATATGTCCTAATTAGTTCAAGTGTT
26814308 TTAAATATGTCCTAA
1 TTAAATATGTCCTAA
26814323 ACTAATACAT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.45
Consensus pattern (29 bp):
TTAAATATGTCCTAATTAGTTCAAGTGTT
Found at i:26821651 original size:15 final size:16
Alignment explanation
Indices: 26821626--26821657 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
26821616 TATCTCACAC
26821626 TCATCTTCTTTTTCTT
1 TCATCTTCTTTTTCTT
26821642 TCAT-TTCTTTTTCTT
1 TCATCTTCTTTTTCTT
26821657 T
1 T
26821658 TTCATTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.06, C:0.22, G:0.00, T:0.72
Consensus pattern (16 bp):
TCATCTTCTTTTTCTT
Found at i:26822668 original size:13 final size:13
Alignment explanation
Indices: 26822650--26822698 Score: 98
Period size: 13 Copynumber: 3.8 Consensus size: 13
26822640 AATAATAATT
26822650 AATTTTTTTTTCA
1 AATTTTTTTTTCA
26822663 AATTTTTTTTTCA
1 AATTTTTTTTTCA
26822676 AATTTTTTTTTCA
1 AATTTTTTTTTCA
26822689 AATTTTTTTT
1 AATTTTTTTT
26822699 ACAATCTCGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 36 1.00
ACGTcount: A:0.22, C:0.06, G:0.00, T:0.71
Consensus pattern (13 bp):
AATTTTTTTTTCA
Found at i:26832174 original size:18 final size:18
Alignment explanation
Indices: 26832153--26832191 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
26832143 GATTGAGAGT
* *
26832153 GAAAAGGAATGTGAAACA
1 GAAAAGAAATGTGAAAAA
*
26832171 GAAAAGAAATTTGAAAAA
1 GAAAAGAAATGTGAAAAA
26832189 GAA
1 GAA
26832192 GTTGAAGAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.62, C:0.03, G:0.23, T:0.13
Consensus pattern (18 bp):
GAAAAGAAATGTGAAAAA
Done.