Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53248092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1300000 characters in sequence are not A, C, G, or T
File 95 of 175
Found at i:30448297 original size:15 final size:15
Alignment explanation
Indices: 30448277--30448321 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
30448267 TATATTTTAT
30448277 AATTAAATAATTAAA
1 AATTAAATAATTAAA
* *
30448292 AATTAATTAAATAAA
1 AATTAAATAATTAAA
30448307 ATATTAGAATAATTA
1 A-ATTA-AATAATTA
30448322 GATTTAATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
15 14 0.58
16 4 0.17
17 6 0.25
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (15 bp):
AATTAAATAATTAAA
Found at i:30449847 original size:17 final size:17
Alignment explanation
Indices: 30449827--30449910 Score: 60
Period size: 17 Copynumber: 4.9 Consensus size: 17
30449817 TTATGATGGA
30449827 GCATGAACTGTTATTTT
1 GCATGAACTGTTATTTT
* **
30449844 GCATGAATTGTTATTCG
1 GCATGAACTGTTATTTT
* * *
30449861 GTATGAACTGATATTTC
1 GCATGAACTGTTATTTT
** * *
30449878 ATATGAATTATTATTTT
1 GCATGAACTGTTATTTT
* *
30449895 GCATGAGCTGTCATTT
1 GCATGAACTGTTATTT
30449911 GGTAAGAATT
Statistics
Matches: 48, Mismatches: 19, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
17 48 1.00
ACGTcount: A:0.26, C:0.11, G:0.18, T:0.45
Consensus pattern (17 bp):
GCATGAACTGTTATTTT
Found at i:30449927 original size:51 final size:51
Alignment explanation
Indices: 30449837--30449935 Score: 126
Period size: 51 Copynumber: 1.9 Consensus size: 51
30449827 GCATGAACTG
* * * *
30449837 TTATTTTGCATGAATTGTTATTCGGTATGAACTGATATTTCATATGAATTA
1 TTATTTTGCATGAACTGTCATTCGGTAAGAACTGATATTTCAAATGAATTA
* * * *
30449888 TTATTTTGCATGAGCTGTCATTTGGTAAGAATTGTTATTTCAAATGAA
1 TTATTTTGCATGAACTGTCATTCGGTAAGAACTGATATTTCAAATGAA
30449936 AAGATGTTTG
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 40 1.00
ACGTcount: A:0.29, C:0.08, G:0.17, T:0.45
Consensus pattern (51 bp):
TTATTTTGCATGAACTGTCATTCGGTAAGAACTGATATTTCAAATGAATTA
Found at i:30452792 original size:22 final size:22
Alignment explanation
Indices: 30452767--30452815 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
30452757 TTTATACCCA
30452767 TGTTTGTATTTGTAAAATAAAT
1 TGTTTGTATTTGTAAAATAAAT
30452789 TGTTTGTATTTGTAAAATAAAT
1 TGTTTGTATTTGTAAAATAAAT
30452811 TGTTT
1 TGTTT
30452816 AAGACATTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (22 bp):
TGTTTGTATTTGTAAAATAAAT
Found at i:30455220 original size:25 final size:27
Alignment explanation
Indices: 30455165--30455230 Score: 77
Period size: 27 Copynumber: 2.5 Consensus size: 27
30455155 CAATATTATT
30455165 TTTAATAATTTTT-TGTTTTCTCATATC
1 TTTAATAATTTTTATGTTTTCTCATA-C
30455192 TTTAATAATTTTTAT-TATTT-TCATA-
1 TTTAATAATTTTTATGT-TTTCTCATAC
*
30455217 TTTAATTATTTTTA
1 TTTAATAATTTTTA
30455231 ACCTCACAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
25 13 0.36
27 19 0.53
28 4 0.11
ACGTcount: A:0.27, C:0.06, G:0.02, T:0.65
Consensus pattern (27 bp):
TTTAATAATTTTTATGTTTTCTCATAC
Found at i:30457193 original size:18 final size:20
Alignment explanation
Indices: 30457165--30457201 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
30457155 AACATTTTCC
30457165 TTCTCTTCTT-CTTATTTTT
1 TTCTCTTCTTCCTTATTTTT
30457184 TTCT-TTCTTCCTTATTTT
1 TTCTCTTCTTCCTTATTTT
30457202 CCCTCCCTCG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.05, C:0.22, G:0.00, T:0.73
Consensus pattern (20 bp):
TTCTCTTCTTCCTTATTTTT
Found at i:30457730 original size:12 final size:12
Alignment explanation
Indices: 30457710--30457748 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
30457700 CACACAACCG
*
30457710 TGTGGTAGGTCA
1 TGTGGTAGGCCA
*
30457722 TGTGTTAGGCCA
1 TGTGGTAGGCCA
30457734 TGTGGTAGGCCA
1 TGTGGTAGGCCA
30457746 TGT
1 TGT
30457749 AACTCACTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.15, C:0.13, G:0.38, T:0.33
Consensus pattern (12 bp):
TGTGGTAGGCCA
Found at i:30457852 original size:63 final size:63
Alignment explanation
Indices: 30457743--30457888 Score: 186
Period size: 63 Copynumber: 2.3 Consensus size: 63
30457733 ATGTGGTAGG
* * * * * *
30457743 CCATGTAACTCACTATTTTGGAATTAGAGACATATAGGCTAGAGACACAGGCGTCTGTGCAGG
1 CCATGTAACTCACTATTTTGGAATTAGAGACACAGAGGCTACAGACACAAGCGTCTGTCCAGA
* * * *
30457806 TCGTGTAACTCACTATTTTGGAATTAGGGACACACGA-GCTACAGACACAAGCGTGTGTCCAGA
1 CCATGTAACTCACTATTTTGGAATTAGAGACACA-GAGGCTACAGACACAAGCGTCTGTCCAGA
30457869 CCATGTAACTCACTATTTTG
1 CCATGTAACTCACTATTTTG
30457889 AGCCACACTA
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
63 69 0.99
64 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (63 bp):
CCATGTAACTCACTATTTTGGAATTAGAGACACAGAGGCTACAGACACAAGCGTCTGTCCAGA
Found at i:30461164 original size:13 final size:13
Alignment explanation
Indices: 30461146--30461190 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
30461136 TTTAAATAAA
30461146 CAGTTAATAGAAT
1 CAGTTAATAGAAT
*
30461159 CAGTTAATCA-AGT
1 CAGTTAAT-AGAAT
30461172 CAGTTAATAGAAT
1 CAGTTAATAGAAT
30461185 CAGTTA
1 CAGTTA
30461191 GTCAAACCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 1 0.04
13 26 0.93
14 1 0.04
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.31
Consensus pattern (13 bp):
CAGTTAATAGAAT
Found at i:30461175 original size:26 final size:26
Alignment explanation
Indices: 30461146--30461195 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
30461136 TTTAAATAAA
30461146 CAGTTAATAGAATCAGTTAATCAAGT
1 CAGTTAATAGAATCAGTTAATCAAGT
*
30461172 CAGTTAATAGAATCAGTTAGTCAA
1 CAGTTAATAGAATCAGTTAATCAA
30461196 ACCAGTCATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.30
Consensus pattern (26 bp):
CAGTTAATAGAATCAGTTAATCAAGT
Found at i:30461201 original size:26 final size:26
Alignment explanation
Indices: 30461146--30461201 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
30461136 TTTAAATAAA
**
30461146 CAGTTAATAGAATCAGTTAATCAAGT
1 CAGTTAATAGAATCAGTTAATCAAAC
*
30461172 CAGTTAATAGAATCAGTTAGTCAAAC
1 CAGTTAATAGAATCAGTTAATCAAAC
30461198 CAGT
1 CAGT
30461202 CATTGTAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (26 bp):
CAGTTAATAGAATCAGTTAATCAAAC
Found at i:30461730 original size:57 final size:57
Alignment explanation
Indices: 30461669--30461788 Score: 204
Period size: 57 Copynumber: 2.1 Consensus size: 57
30461659 GTGTTATGAT
* *
30461669 ACTGATGGTCGACACCCCCTTATCTGATTAAAAAAAGTTTTTTTGGGGTGTTGGGAC
1 ACTGATGGCCGACACCCCCTTATCTGATTAAAAAAAGTTTTTTTGGGGTGCTGGGAC
* *
30461726 ACTGATGGCCGACACCCCTTTATCTGATTAAAAAAGGTTTTTTTGGGGTGCTGGGAC
1 ACTGATGGCCGACACCCCCTTATCTGATTAAAAAAAGTTTTTTTGGGGTGCTGGGAC
30461783 ACTGAT
1 ACTGAT
30461789 AGCTGTCACA
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
57 59 1.00
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (57 bp):
ACTGATGGCCGACACCCCCTTATCTGATTAAAAAAAGTTTTTTTGGGGTGCTGGGAC
Found at i:30461805 original size:57 final size:57
Alignment explanation
Indices: 30461669--30461849 Score: 174
Period size: 57 Copynumber: 3.3 Consensus size: 57
30461659 GTGTTATGAT
* * * * *
30461669 ACTGATGGTCGACACCCCCTTATCTGATTAAAAAAAGTTTTTTTGGGGTGTTGGGAC
1 ACTGATAGCCGACACACCTTTATCTGATTAAAAAAAGTTTTTTTGGGGTGCTGGGAC
* * *
30461726 ACTGATGGCCGACACCCCTTTATCTGATTAAAAAAGGTTTTTTTGGGGTGCTGGGAC
1 ACTGATAGCCGACACACCTTTATCTGATTAAAAAAAGTTTTTTTGGGGTGCTGGGAC
* * ** * * *
30461783 ACTGATAGCTGTCACATTTTTATTTGATT-----AATTTTTTTTTGGGTGCTGGGAC
1 ACTGATAGCCGACACACCTTTATCTGATTAAAAAAAGTTTTTTTGGGGTGCTGGGAC
* *
30461835 AGTGATGGCCGACAC
1 ACTGATAGCCGACAC
30461850 CTTTTTTCCA
Statistics
Matches: 106, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
52 31 0.29
57 75 0.71
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (57 bp):
ACTGATAGCCGACACACCTTTATCTGATTAAAAAAAGTTTTTTTGGGGTGCTGGGAC
Found at i:30461957 original size:53 final size:55
Alignment explanation
Indices: 30461823--30461964 Score: 155
Period size: 53 Copynumber: 2.6 Consensus size: 55
30461813 ATTTTTTTTT
* * * *
30461823 GGGTGCTGGGACAGTGATGGCCGACACCTTTTTTCCAGAATTAAAAAAAAAATTA
1 GGGTGCTAGGACACTGATGACCGACACCCTTTTTCCAGAATTAAAAAAAAAATTA
* * * * *
30461878 GGGTG-TTGGAACACTGATAACTGACACCCCTTTTCCA-AATT-AAAAAAAAATTG
1 GGGTGCTAGG-ACACTGATGACCGACACCCTTTTTCCAGAATTAAAAAAAAAATTA
* *
30461931 GGGTGCTAAGACATTGATGACCGACACCCTTTTT
1 GGGTGCTAGGACACTGATGACCGACACCCTTTTT
30461965 ATTAGTTCAA
Statistics
Matches: 71, Mismatches: 14, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
53 36 0.51
54 9 0.13
55 26 0.37
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (55 bp):
GGGTGCTAGGACACTGATGACCGACACCCTTTTTCCAGAATTAAAAAAAAAATTA
Found at i:30464251 original size:37 final size:37
Alignment explanation
Indices: 30464109--30464252 Score: 109
Period size: 37 Copynumber: 3.9 Consensus size: 37
30464099 ATTTATTAGT
* * *
30464109 TTGTAAATTTTTT-AAA-ATCGTTTTCAGAATGTATCAC
1 TTGT-AATTTTTTAAAATATTGATTTCA-AATTTATCAC
* * * *
30464146 TTTGTAATTTTTTAAACTATTGATTTGAAATTTTTCAG
1 -TTGTAATTTTTTAAAATATTGATTTCAAATTTATCAC
* *
30464184 TTGTCATTTTTTTAAAA-A-AGATTTCTAAATTTATCAC
1 TTGT-AATTTTTTAAAATATTGATTTC-AAATTTATCAC
*
30464221 TCTGTAATTCTTTAAAATATTGA-TTCAAATTT
1 T-TGTAATTTTTTAAAATATTGATTTCAAATTT
30464253 TTTCAGTTTG
Statistics
Matches: 83, Mismatches: 16, Indels: 15
0.73 0.14 0.13
Matches are distributed among these distances:
36 5 0.06
37 39 0.47
38 30 0.36
39 9 0.11
ACGTcount: A:0.33, C:0.09, G:0.08, T:0.50
Consensus pattern (37 bp):
TTGTAATTTTTTAAAATATTGATTTCAAATTTATCAC
Found at i:30466002 original size:19 final size:19
Alignment explanation
Indices: 30465978--30466015 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
30465968 ATCTAAAGTT
30465978 TTATTTAATTTAC-ATTTTA
1 TTATTT-ATTTACTATTTTA
30465997 TTATTTATTTACTATTTTA
1 TTATTTATTTACTATTTTA
30466016 CCCTTAGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (19 bp):
TTATTTATTTACTATTTTA
Found at i:30469877 original size:131 final size:130
Alignment explanation
Indices: 30469453--30469844 Score: 579
Period size: 130 Copynumber: 3.0 Consensus size: 130
30469443 TTTGATCCGC
* * * * *
30469453 TCCACTGC-AACTTCAGGGAAATAGGATTAGTGGCTTAAATCTGTTTGCTTACTACCTGGGGAAG
1 TCCACTGCTAAC--CAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCTACT-CCT-GGGAAG
* * *
30469517 ATAAGATTCGTCGTCTTCGATTTGCTCCACTACTGCTTAGGGAGATAAGATCCGTAATTTTCAAC
62 ATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAAC
30469582 CTAT
127 CTAT
* * *
30469586 TCCACTGCTAACCAGGGAGATAGGACTAGTGGCTTAAGTCTACTTTCCTACTCCTGGGAAGATAA
1 TCCACTGCTAACCAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCTACTCCTGGGAAGATAA
* * *
30469651 GATTCGCCGTCTTCGATCTGCTCCATTACTGCTTAGAGAGATAAGATCTGTAATTTCCAACCTAT
66 GATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTAT
*
30469716 TCCACTGCTGACCAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCTACTCCTGGGAAAGATA
1 TCCACTGCTAACCAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCTACTCCTGGG-AAGATA
* *
30469781 AGATTCACCGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCT
65 AGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCT
30469845 GCTCTGCTGC
Statistics
Matches: 235, Mismatches: 22, Indels: 6
0.89 0.08 0.02
Matches are distributed among these distances:
130 123 0.52
131 68 0.29
132 33 0.14
133 8 0.03
134 3 0.01
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.30
Consensus pattern (130 bp):
TCCACTGCTAACCAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCTACTCCTGGGAAGATAA
GATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTAT
Found at i:30469887 original size:131 final size:130
Alignment explanation
Indices: 30469453--30469892 Score: 555
Period size: 130 Copynumber: 3.4 Consensus size: 130
30469443 TTTGATCCGC
* * * * * *
30469453 TCCACTGC-AACTTCAGGGAAATAGGATTAGTGGCTTAAATCTGTTTGCTTACTACCTGGGGAAG
1 TCCACTGCTAAC--CAGGGAGATAGGACTAGTGGCTTTAATCTGCTTCCCTACT-CCT-GGGAAG
* * *
30469517 ATAAGATTCGTCGTCTTCGATTTGCTCCACTACTGCTTAGGGAGATAAGATCCGTAATTTTCAAC
62 ATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAAC
30469582 CTAT
127 CTAT
* *
30469586 TCCACTGCTAACCAGGGAGATAGGACTAGTGGC-TTAAGTCTACTTTCCTACTCCTGGGAAGATA
1 TCCACTGCTAACCAGGGAGATAGGACTAGTGGCTTTAA-TCTGCTTCCCTACTCCTGGGAAGATA
* * *
30469650 AGATTCGCCGTCTTCGATCTGCTCCATTACTGCTTAGAGAGATAAGATCTGTAATTTCCAACCTA
65 AGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTA
30469715 T
130 T
* *
30469716 TCCACTGCTGACCAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCTACTCCTGGGAAAGATA
1 TCCACTGCTAACCAGGGAGATAGGACTAGTGGCTTTAATCTGCTTCCCTACTCCTGGG-AAGATA
* * *
30469781 AGATTCACCGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTG
65 AGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTA
*
30469846 C
130 T
** * * *
30469847 TCTGCTGC-AATCCAGGAAGGCTA-GACTAGTGTCTTTAATCTGCTTC
1 TCCACTGCTAA-CCAGGGA-GATAGGACTAGTGGCTTTAATCTGCTTC
30469893 ACTATCAGTA
Statistics
Matches: 270, Mismatches: 31, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
130 120 0.44
131 107 0.40
132 32 0.12
133 8 0.03
134 3 0.01
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (130 bp):
TCCACTGCTAACCAGGGAGATAGGACTAGTGGCTTTAATCTGCTTCCCTACTCCTGGGAAGATAA
GATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTAT
Found at i:30470074 original size:44 final size:43
Alignment explanation
Indices: 30469952--30470079 Score: 125
Period size: 45 Copynumber: 2.9 Consensus size: 43
30469942 CAACCCAAGG
* * *
30469952 AGGCAAGGCTAGTGTCTTCAATCTGCTTCACTGTTAGTATAGGA
1 AGGCAAGACTAGTGTCTTC-ATCTGCTTCGCTGTCAGTATAGGA
* * *
30469996 AAGCAAGATCT-GCTATCTTCAGTCTGCTCCGCTGTCAGT-TGAGGA
1 AGGCAAGA-CTAG-TGTCTTCA-TCTGCTTCGCTGTCAGTAT-AGGA
*
30470041 AGGCAAGACTAGTGTCTTCGATTTGCTTCGCTGTCAGTA
1 AGGCAAGACTAGTGTCTTC-ATCTGCTTCGCTGTCAGTA
30470080 CAAAAAGGCA
Statistics
Matches: 67, Mismatches: 10, Indels: 13
0.74 0.11 0.14
Matches are distributed among these distances:
44 32 0.48
45 35 0.52
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (43 bp):
AGGCAAGACTAGTGTCTTCATCTGCTTCGCTGTCAGTATAGGA
Found at i:30470181 original size:177 final size:177
Alignment explanation
Indices: 30469837--30470206 Score: 427
Period size: 177 Copynumber: 2.1 Consensus size: 177
30469827 ATCTGTAATT
* * ** * *
30469837 TTCAACCTGCTCTGCTG-CAATCCAGGAAGGCTAGACTAGTGTCTTTAATCTGCTTCACTATCAG
1 TTCAACCTGCTCCGCTGTCAGTTGAGGAAGGCAAGACTAGTGTCTTCAATCTGCTTCACTATCAG
* ** * * * *
30469901 TATAGGAAGGCAAGATCTGCTATCTTTAACCTATTCCGCTGCAACCCAAGGAGGCAAGGCTAGTG
66 TACAAAAAGGCAAGATCTGCCATCTTCAACCTACTCCACTGCAACCCAAGGAGGCAAGGCTAGTG
* * * **
30469966 TCTTCAATCTGCTTCACTGTTAGTATAGGAAAGCAAGATCTGCTATC
131 TCTTCAATCTACTTCACTGTCAGTACAGGAAAGCAAGATCCACTATC
** * * * *
30470013 TTCAGTCTGCTCCGCTGTCAGTTGAGGAAGGCAAGACTAGTGTCTTCGATTTGCTTCGCTGTCAG
1 TTCAACCTGCTCCGCTGTCAGTTGAGGAAGGCAAGACTAGTGTCTTCAATCTGCTTCACTATCAG
* * * * *
30470078 TACAAAAAGGCAAGATCTGCCATCTTCAACCTGCTCCATTGTAACCTAGGGAGGCAAGGCTAGTG
66 TACAAAAAGGCAAGATCTGCCATCTTCAACCTACTCCACTGCAACCCAAGGAGGCAAGGCTAGTG
* * * * *
30470143 TCTTCGATCTACTTCGCTGTCGGTGCAGGAAGGCAAGATCCACTATC
131 TCTTCAATCTACTTCACTGTCAGTACAGGAAAGCAAGATCCACTATC
30470190 TTCAACCTGCTCCGCTG
1 TTCAACCTGCTCCGCTG
30470207 CAACCCGGGG
Statistics
Matches: 157, Mismatches: 36, Indels: 1
0.81 0.19 0.01
Matches are distributed among these distances:
176 14 0.09
177 143 0.91
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.28
Consensus pattern (177 bp):
TTCAACCTGCTCCGCTGTCAGTTGAGGAAGGCAAGACTAGTGTCTTCAATCTGCTTCACTATCAG
TACAAAAAGGCAAGATCTGCCATCTTCAACCTACTCCACTGCAACCCAAGGAGGCAAGGCTAGTG
TCTTCAATCTACTTCACTGTCAGTACAGGAAAGCAAGATCCACTATC
Found at i:30470218 original size:88 final size:88
Alignment explanation
Indices: 30469824--30470243 Score: 410
Period size: 88 Copynumber: 4.8 Consensus size: 88
30469814 TTAGGGAGAT
* * * * * * **
30469824 AAGATCTG-TAATTTTCAACCTGCTCTGCTGCAATCCAGGAAGGCTAGACTAGTGTCTTTAATCT
1 AAGATCTGCT-ATCTTCAACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCT
* *
30469888 GCTTCACTATCAGTATAGGAAGGC
65 GCTTCACTGTCAGTACAGGAAGGC
* ** * *
30469912 AAGATCTGCTATCTTTAACCTATTCCGCTGCAACCCAAGGAGGCAAGGCTAGTGTCTTCAATCTG
1 AAGATCTGCTATCTTCAACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTG
* * *
30469977 CTTCACTGTTAGTATAGGAAAGC
66 CTTCACTGTCAGTACAGGAAGGC
** **** * * *
30470000 AAGATCTGCTATCTTCAGTCTGCTCCGCTGTCAGTTGAGGAAGGCAAGACTAGTGTCTTCGATTT
1 AAGATCTGCTATCTTCAACCTGCTCCGCTG-CAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCT
* **
30470065 GCTTCGCTGTCAGTACAAAAAGGC
65 GCTTCACTGTCAGTACAGGAAGGC
* ** * * *
30470089 AAGATCTGCCATCTTCAACCTGCTCCATTGTAACCTAGGGAGGCAAGGCTAGTGTCTTCGATCTA
1 AAGATCTGCTATCTTCAACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTG
* * *
30470154 CTTCGCTGTCGGTGCAGGAAGGC
66 CTTCACTGTCAGTACAGGAAGGC
** * * * *
30470177 AAGATCCACTATCTTCAACCTGCTCCGCTGCAACCCGGGGAGGTAAGGTTGGTGTCTTCGATCTG
1 AAGATCTGCTATCTTCAACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTG
30470242 CT
66 CT
30470244 ATTTTCAACC
Statistics
Matches: 266, Mismatches: 64, Indels: 4
0.80 0.19 0.01
Matches are distributed among these distances:
88 197 0.74
89 69 0.26
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.28
Consensus pattern (88 bp):
AAGATCTGCTATCTTCAACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTG
CTTCACTGTCAGTACAGGAAGGC
Found at i:30470287 original size:57 final size:57
Alignment explanation
Indices: 30470185--30470300 Score: 169
Period size: 57 Copynumber: 2.0 Consensus size: 57
30470175 GCAAGATCCA
* * * * *
30470185 CTATCTTCAACCTGCTCCGCTGCAACCCGGGGAGGTAAGGTTGGTGTCTTCGATCTG
1 CTATCTTCAACCTGCTCCGCTGCAACACAGGGAAGCAAGGCTGGTGTCTTCGATCTG
* *
30470242 CTATTTTCAACCTGCTCCGCTGCAACACAGGGAAGCAAGGCTGGTGTCTTCGATTTG
1 CTATCTTCAACCTGCTCCGCTGCAACACAGGGAAGCAAGGCTGGTGTCTTCGATCTG
30470299 CT
1 CT
30470301 TCGCTGTCGG
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 52 1.00
ACGTcount: A:0.18, C:0.28, G:0.26, T:0.28
Consensus pattern (57 bp):
CTATCTTCAACCTGCTCCGCTGCAACACAGGGAAGCAAGGCTGGTGTCTTCGATCTG
Found at i:30470354 original size:145 final size:145
Alignment explanation
Indices: 30470091--30470388 Score: 429
Period size: 145 Copynumber: 2.1 Consensus size: 145
30470081 AAAAAGGCAA
* * * *
30470091 GATCTGCCATCTTCAACCTGCTCCATTGTAACCTAGGGAGGCAAGGCTAGTGTCTTCGATCTACT
1 GATCTGCTATCTTCAACCTGCTCCACTGCAACCTAGGGAAGCAAGGCTAGTGTCTTCGATCTACT
*
30470156 TCGCTGTCGGTGCAGGAAGGCAAGATCCACTATCTTCAACCTGCTCCGCTGCAACCCG-GGGAGG
66 TCGCTGTCGGTGCAGGAAGGCAAGATCCACTATCTTCAACCTGCTCCACTGCAA-CCGAGGGAGG
*
30470220 TAAGGTTGGTGTCTTC
130 CAAGGTTGGTGTCTTC
* * * * *
30470236 GATCTGCTATTTTCAACCTGCTCCGCTGCAACAC-AGGGAAGCAAGGCTGGTGTCTTCGATTTGC
1 GATCTGCTATCTTCAACCTGCTCCACTGCAAC-CTAGGGAAGCAAGGCTAGTGTCTTCGATCTAC
** *
30470300 TTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTCAACCTGCTCCACTGCAACCGAGGGAGG
65 TTCGCTGTCGGTGCAGGAAGGCAAGATCCACTATCTTCAACCTGCTCCACTGCAACCGAGGGAGG
30470365 CAAGGTTGGTGTCTTC
130 CAAGGTTGGTGTCTTC
*
30470381 AATCTGCT
1 GATCTGCT
30470389 TCACTGTCGG
Statistics
Matches: 136, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
144 3 0.02
145 132 0.97
146 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.27
Consensus pattern (145 bp):
GATCTGCTATCTTCAACCTGCTCCACTGCAACCTAGGGAAGCAAGGCTAGTGTCTTCGATCTACT
TCGCTGTCGGTGCAGGAAGGCAAGATCCACTATCTTCAACCTGCTCCACTGCAACCGAGGGAGGC
AAGGTTGGTGTCTTC
Found at i:30470389 original size:88 final size:88
Alignment explanation
Indices: 30470236--30470426 Score: 285
Period size: 88 Copynumber: 2.2 Consensus size: 88
30470226 TGGTGTCTTC
* * *
30470236 GATCTGCTATTTTCAACCTGCTCCGCTGCAACACAGGGAAGCAAGGCTGGTGTCTTCGATTTGCT
1 GATCTGCTATTTTCAACCTGCTCCACTGCAACACAGGGAAGCAAGGCTGGTGTCTTCAATCTGCT
*
30470301 TCGCTGTCGGTGCAGGAAGGCAA
66 TCACTGTCGGTGCAGGAAGGCAA
* *
30470324 GATCTGCTATTTTCAACCTGCTCCACTGCAAC-CGAGGGAGGCAAGGTTGGTGTCTTCAATCTGC
1 GATCTGCTATTTTCAACCTGCTCCACTGCAACAC-AGGGAAGCAAGGCTGGTGTCTTCAATCTGC
* *
30470388 TTCACTGTCGGTGTAGGAAGGGAA
65 TTCACTGTCGGTGCAGGAAGGCAA
*
30470412 GATCTGCTATCTTCA
1 GATCTGCTATTTTCA
30470427 CTTATCTATT
Statistics
Matches: 93, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
87 1 0.01
88 92 0.99
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.28
Consensus pattern (88 bp):
GATCTGCTATTTTCAACCTGCTCCACTGCAACACAGGGAAGCAAGGCTGGTGTCTTCAATCTGCT
TCACTGTCGGTGCAGGAAGGCAA
Found at i:30476983 original size:8 final size:8
Alignment explanation
Indices: 30476968--30476997 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
30476958 AATATGCCAA
30476968 TAAT-AAT
1 TAATAAAT
30476975 TAATAAAT
1 TAATAAAT
30476983 TAATAAAT
1 TAATAAAT
30476991 TAATAAA
1 TAATAAA
30476998 AAACAAATGT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 4 0.18
8 18 0.82
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (8 bp):
TAATAAAT
Found at i:30480685 original size:22 final size:23
Alignment explanation
Indices: 30480650--30480714 Score: 66
Period size: 22 Copynumber: 3.0 Consensus size: 23
30480640 AAAAACTATC
* *
30480650 TACAAATTAAATCTCTAAGATTA
1 TACAAATCATATCTCTAAGATTA
30480673 TA-AAATCATATCTTCTAAGA--A
1 TACAAATCATATC-TCTAAGATTA
*
30480694 TACATATCATATCT-TAAGATT
1 TACAAATCATATCTCTAAGATT
30480715 GAATATCTTC
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
20 5 0.14
21 4 0.11
22 17 0.49
23 9 0.26
ACGTcount: A:0.45, C:0.14, G:0.05, T:0.37
Consensus pattern (23 bp):
TACAAATCATATCTCTAAGATTA
Found at i:30482133 original size:29 final size:29
Alignment explanation
Indices: 30482084--30482157 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
30482074 AATAAAAATC
* *
30482084 AATAAAAATTATTA-AATTATTAAATTTT
1 AATAAAAAATATTAGAAATATTAAATTTT
* *
30482112 AATAAAAAATATAAGAAATATTTAATTTT
1 AATAAAAAATATTAGAAATATTAAATTTT
*
30482141 TATAAAAAA-ATTAGAAA
1 AATAAAAAATATTAGAAA
30482158 AGGATTATAA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 19 0.49
29 20 0.51
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (29 bp):
AATAAAAAATATTAGAAATATTAAATTTT
Found at i:30482511 original size:18 final size:18
Alignment explanation
Indices: 30482471--30482510 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
30482461 TTTTTGATGC
*
30482471 ATTTTATAATTTATATAT
1 ATTTTACAATTTATATAT
30482489 ATTTTACAATTTATATAT
1 ATTTTACAATTTATATAT
30482507 -TTTT
1 ATTTT
30482511 TCTTTCTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 4 0.19
18 17 0.81
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (18 bp):
ATTTTACAATTTATATAT
Found at i:30482561 original size:19 final size:18
Alignment explanation
Indices: 30482539--30482594 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 18
30482529 AATTTTAAAT
30482539 ATTTTTATA-TTTTTATTAA
1 ATTTTTATATTTTTTA-T-A
*
30482558 ATTTTAATATTTTTTATA
1 ATTTTTATATTTTTTATA
30482576 ATTTTTATTGATTTTTTAT
1 ATTTTTA-T-ATTTTTTAT
30482595 TTTTATTTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
18 7 0.22
19 10 0.31
20 15 0.47
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.70
Consensus pattern (18 bp):
ATTTTTATATTTTTTATA
Found at i:30482573 original size:20 final size:20
Alignment explanation
Indices: 30482539--30482595 Score: 64
Period size: 19 Copynumber: 2.9 Consensus size: 20
30482529 AATTTTAAAT
*
30482539 ATTTTTATA-TTTTTATTAA
1 ATTTTAATATTTTTTATTAA
30482558 ATTTTAATATTTTTTA-TAA
1 ATTTTAATATTTTTTATTAA
* *
30482577 TTTTTATTGATTTTTTATT
1 ATTTTAAT-ATTTTTTATT
30482596 TTTATTTGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 17 0.53
20 14 0.44
21 1 0.03
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (20 bp):
ATTTTAATATTTTTTATTAA
Found at i:30482590 original size:28 final size:28
Alignment explanation
Indices: 30482518--30482584 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
30482508 TTTTCTTTCT
*
30482518 TATTTTTAGTAAATTTTAA-ATATTTTTA
1 TATTTTTATTAAATTTTAATAT-TTTTTA
30482546 TATTTTTATTAAATTTTAATATTTTTTA
1 TATTTTTATTAAATTTTAATATTTTTTA
30482574 TAATTTTTATT
1 T-ATTTTTATT
30482585 GATTTTTTAT
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
28 25 0.69
29 11 0.31
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (28 bp):
TATTTTTATTAAATTTTAATATTTTTTA
Found at i:30499197 original size:25 final size:25
Alignment explanation
Indices: 30499169--30499216 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
30499159 ATGCGGAAGT
30499169 GGATCGTAAAGTTTGCAAAAGTCGC
1 GGATCGTAAAGTTTGCAAAAGTCGC
*
30499194 GGATCGTAAAGTTTGCCAAAGTC
1 GGATCGTAAAGTTTGCAAAAGTC
30499217 ACAGATTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (25 bp):
GGATCGTAAAGTTTGCAAAAGTCGC
Found at i:30499615 original size:17 final size:17
Alignment explanation
Indices: 30499575--30499618 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
30499565 AGATTCATCC
*
30499575 TCGAATATTGTCTTTGA
1 TCGAATCTTGTCTTTGA
30499592 TCGAATCTTGTCTTTGA
1 TCGAATCTTGTCTTTGA
30499609 TCGAATCTTG
1 TCGAATCTTG
30499619 ATTTGATTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.20, C:0.16, G:0.18, T:0.45
Consensus pattern (17 bp):
TCGAATCTTGTCTTTGA
Found at i:30502858 original size:14 final size:15
Alignment explanation
Indices: 30502836--30502874 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
30502826 TTCAAGTCAG
30502836 ATAAAATAATTAAAA
1 ATAAAATAATTAAAA
*
30502851 AT-AAATAACTAAAA
1 ATAAAATAATTAAAA
30502865 ATAAAATAAT
1 ATAAAATAAT
30502875 AAACCAAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 13 0.62
15 8 0.38
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.26
Consensus pattern (15 bp):
ATAAAATAATTAAAA
Found at i:30504588 original size:50 final size:50
Alignment explanation
Indices: 30504509--30504688 Score: 209
Period size: 50 Copynumber: 3.6 Consensus size: 50
30504499 CATTTGGGTA
* * *
30504509 AAGAGATCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGAT
* *
30504559 AAGAGGTCCTATGTAAGACCTTGTTTGGGACATGGCGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGAT
** * * * *
30504609 GAA-AGGTCCCCCGTAAGACCATGTTTGGGAGATGGCATGGGCACCGATAT
1 -AAGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGAT
* ** *
30504659 GAGAACTCCCATGTAAGACCATATTTGGGA
1 AAGAGGTCCCATGTAAGACCATGTTTGGGA
30504689 TATGTCACTG
Statistics
Matches: 109, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 1 0.01
50 106 0.97
51 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (50 bp):
AAGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGAT
Found at i:30508545 original size:26 final size:26
Alignment explanation
Indices: 30508509--30508559 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
30508499 ACAACAAAAA
*
30508509 ATGCTCGCACTCTTTCCCTGTTTTTC
1 ATGCTCACACTCTTTCCCTGTTTTTC
30508535 ATGCTCACACTCTTTCCCTGTTTTT
1 ATGCTCACACTCTTTCCCTGTTTTT
30508560 ATTTTCTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.10, C:0.33, G:0.10, T:0.47
Consensus pattern (26 bp):
ATGCTCACACTCTTTCCCTGTTTTTC
Found at i:30509385 original size:30 final size:30
Alignment explanation
Indices: 30509350--30509407 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
30509340 AAAGGAAAAT
30509350 TGAACTAACTTATGCTTAACAACTTGCTAA
1 TGAACTAACTTATGCTTAACAACTTGCTAA
30509380 TGAACTAACTTATGCTTAACAACTTGCT
1 TGAACTAACTTATGCTTAACAACTTGCT
30509408 TTTAGCGATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.34
Consensus pattern (30 bp):
TGAACTAACTTATGCTTAACAACTTGCTAA
Found at i:30511435 original size:17 final size:17
Alignment explanation
Indices: 30511413--30511445 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
30511403 TAATCTTATT
30511413 AAATATAATTTAATAAA
1 AAATATAATTTAATAAA
30511430 AAATATAATTTAATAA
1 AAATATAATTTAATAA
30511446 CATTCTTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AAATATAATTTAATAAA
Found at i:30511672 original size:16 final size:16
Alignment explanation
Indices: 30511651--30511682 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
30511641 ATTAAGAATG
30511651 TTATTAAATTATATTT
1 TTATTAAATTATATTT
30511667 TTATTAAATTATATTT
1 TTATTAAATTATATTT
30511683 AATAATAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TTATTAAATTATATTT
Found at i:30513957 original size:19 final size:19
Alignment explanation
Indices: 30513925--30513975 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
30513915 TTTTTACTTG
* *
30513925 TTTTTCCTTCTCTTTTTTTA
1 TTTTT-CTTTTCTTTTTTCA
*
30513945 TTTTTCTTTTC-TTTTTCG
1 TTTTTCTTTTCTTTTTTCA
30513963 TTTTTCTTTTCTT
1 TTTTTCTTTTCTT
30513976 AAGAATATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 16 0.59
19 6 0.22
20 5 0.19
ACGTcount: A:0.02, C:0.18, G:0.02, T:0.78
Consensus pattern (19 bp):
TTTTTCTTTTCTTTTTTCA
Found at i:30516403 original size:33 final size:33
Alignment explanation
Indices: 30516357--30516443 Score: 111
Period size: 33 Copynumber: 2.6 Consensus size: 33
30516347 GAAAATCCTT
*
30516357 TATTTACTTTTGGAAATCAAGAGTTTACCATTG
1 TATTTACTGTTGGAAATCAAGAGTTTACCATTG
* * **
30516390 TATTTGCTGTTGGAAATCAACAGTTTGTCATTG
1 TATTTACTGTTGGAAATCAAGAGTTTACCATTG
* *
30516423 TATCTATTGTTGGAAATCAAG
1 TATTTACTGTTGGAAATCAAG
30516444 CACATTAGCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.29, C:0.11, G:0.18, T:0.41
Consensus pattern (33 bp):
TATTTACTGTTGGAAATCAAGAGTTTACCATTG
Found at i:30519238 original size:44 final size:45
Alignment explanation
Indices: 30519186--30519298 Score: 133
Period size: 44 Copynumber: 2.6 Consensus size: 45
30519176 GATCTACTTT
* * *
30519186 ACTGCAACTTCAGAGAGATAAGATCTACT-ATTTTAATCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATCTACTGACTTCAATCTGCTCC
* *
30519230 ACTGCAACTTCAGGGAGATAGGAT-TACTGGCTTCAATCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATCTACTGACTTCAATCTGCTCC
* * *
30519274 ATTTCAACTT-AGGGAGATAAAATCT
1 ACTGCAACTTCAGGGAGATAAGATCT
30519299 TTAATTTTCA
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
43 15 0.26
44 43 0.74
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (45 bp):
ACTGCAACTTCAGGGAGATAAGATCTACTGACTTCAATCTGCTCC
Found at i:30519406 original size:88 final size:87
Alignment explanation
Indices: 30519314--30519580 Score: 224
Period size: 88 Copynumber: 3.0 Consensus size: 87
30519304 TTTCAACCTA
*
30519314 CTCCACTGCTGCATAGGAAGATAAGGCTAATGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGA
1 CTCCACTGCTGC-TAGGGAGATAAGGCTAATGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGA
30519379 TAAGAGTCGCCGTCTTCGATCTG
65 TAAGAGTCGCCGTCTTCGATCTG
* * * * * * * * * *
30519402 CTCCACTACTGCTTAGGGAGGTAAGATCTGTAAT--TTTCAACCTAC-TCCACTGCT-GCTCAGG
1 CTCCACTGCTGC-TAGGGAGATAAG-GC--TAATGGCTTAAATCTGCTTCC-CTACTACCT-TGG
* ** * * *
30519463 G-AGATAAG-GTCTACAATCTTCAACCTA
60 GAAGATAAGAGTC-GCCGTCTTCGATCTG
*
30519490 CTCCACTGCTGCTCAGGGAGATAAGGC-AAGTGGGTTAAATCTGCTTCCCTACTACCTTGGGAAG
1 CTCCACTGCTGCT-AGGGAGATAAGGCTAA-TGGCTTAAATCTGCTTCCCTACTACCTTGGGAAG
*
30519554 ATAAGAATCGCCGTCTTCGATCTG
64 ATAAGAGTCGCCGTCTTCGATCTG
30519578 CTC
1 CTC
30519581 TACTATAACT
Statistics
Matches: 130, Mismatches: 35, Indels: 28
0.67 0.18 0.15
Matches are distributed among these distances:
84 2 0.02
85 1 0.01
87 19 0.15
88 87 0.67
89 17 0.13
91 4 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (87 bp):
CTCCACTGCTGCTAGGGAGATAAGGCTAATGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGAT
AAGAGTCGCCGTCTTCGATCTG
Found at i:30519450 original size:44 final size:44
Alignment explanation
Indices: 30519402--30520613 Score: 429
Period size: 44 Copynumber: 28.2 Consensus size: 44
30519392 CTTCGATCTG
* * * ** *
30519402 CTCCACTACTGCTTAGGGAGGTAAGATCTGTAATTTTCAACCTA
1 CTCCACTGCTGCTCAGGGAGATAAGATCTACAATCTTCAACCTA
*
30519446 CTCCACTGCTGCTCAGGGAGATAAGGTCTACAATCTTCAACCTA
1 CTCCACTGCTGCTCAGGGAGATAAGATCTACAATCTTCAACCTA
* * * * * *
30519490 CTCCACTGCTGCTCAGGGAGATAAG-GC-A-AGTGGGTTAAATCTG
1 CTCCACTGCTGCTCAGGGAGATAAGATCTACAAT--CTTCAACCTA
* * * * ** * * *
30519533 CTTCC-CTACTAC-CTTGGGAAGATAAGAATC-GCCGTCTTCGATCTG
1 C-TCCACTGCTGCTC-AGGG-AGATAAG-ATCTACAATCTTCAACCTA
* * * * ** *
30519578 CTCTACT-ATAACTTAGGGAGATAAGATCTGTAATTTTCAACCTA
1 CTCCACTGCT-GCTCAGGGAGATAAGATCTACAATCTTCAACCTA
* *
30519622 CTTCACTGCTGCTCAGGGAGATAGGAT-TCACAATCTTCAACCTA
1 CTCCACTGCTGCTCAGGGAGATAAGATCT-ACAATCTTCAACCTA
* * *
30519666 TTCCACTGTTGACT-AGGGAGATAGGA-CTCACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATCT-ACAATCTTCAACCTA
*
30519710 CTCCACTGCTGAC-CAGGGAGATAGGA-CTTACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATC-TACAATCTTCAACCTA
*
30519754 TTCCACTGCTGAC-CAGGGAGAT-AG-TACTCACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGAT-CT-ACAATCTTCAACCTA
* * *
30519798 TTCCACTGCTGAC-CAGGGAGATAGGA-CTCACAATCTTCAGCCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATCT-ACAATCTTCAACCTA
* *
30519842 TTCCATTGCTGAC-CAGGGAGAT-AG------AA--TTC-ACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATCTACAATCTTCAACCTA
* * * *
30519876 TTCCACTGCTGGC-CAGGGAGAT-AGAACTTACAATATTCAACTTA
1 CTCCACTGCT-GCTCAGGGAGATAAGATC-TACAATCTTCAACCTA
* * * **** * * *
30519920 TTCCACTACTGACT-AGGGAGATAAG-GCTAGTGGCTTAAATCTGC
1 CTCCACTGCTG-CTCAGGGAGATAAGATCTACAATCTTCAACCT-A
* * * ** * * *
30519964 CTCC-CTACTAC-CTTGGGAAGATAAGAT-TCACCGTCTTCGATCTG
1 CTCCACTGCTGCTC-AGGG-AGATAAGATCT-ACAATCTTCAACCTA
* * * * * *
30520008 CTCTACTACTGCTTAGGGAGATAAGATCTATAATTTTAAACCTA
1 CTCCACTGCTGCTCAGGGAGATAAGATCTACAATCTTCAACCTA
* *
30520052 CTCCACTGCTGCTCAGGGAGATAGGAT-TCAGAATCTTCAACCTA
1 CTCCACTGCTGCTCAGGGAGATAAGATCT-ACAATCTTCAACCTA
* * *
30520096 TTCCACTGTTGAC-CAGGGAGATAGGA--T----TC-T---CCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATCTACAATCTTCAACCTA
* * * * * *
30520130 TTCCACTACTAAC-CAGGGATATAGGA-CTTACAATCTTCAACTTA
1 CTCCACTGCT-GCTCAGGGAGATAAGATC-TACAATCTTCAACCTA
* * *
30520174 TTCCACTGCTGAC-CAGGAAGATATGA-CTCACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATCT-ACAATCTTCAACCTA
* * *
30520218 TTCCACTGCTGAC-CAGGGAGATAGGA-CTCAAAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATCT-ACAATCTTCAACCTA
* * *
30520262 TTCCACTACTGACT-AGGGAGATATGA-CTTACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATC-TACAATCTTCAACCTA
* * *
30520306 TTCCACTGCTGAC-CAGAGAGATAGGA-CTCACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATCT-ACAATCTTCAACCTA
* * *
30520350 TTCCACTGCTAAC-CAGGGAGA-AAG------GA--TTC-ACCTA
1 CTCCACTGCT-GCTCAGGGAGATAAGATCTACAATCTTCAACCTA
* * *
30520384 TTTCACTGCTGACT-AGGGAGATAGGA-CTTACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATC-TACAATCTTCAACCTA
* *
30520428 TTCCACTGCTGAC-CAGGGAGATAAGA-CTTACAATCTGCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATC-TACAATCTTCAACCTA
* *
30520472 TTCCACTGCTGAC-CAGGGAGATAGGA-CTCACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATCT-ACAATCTTCAACCTA
* * * * * * *
30520516 TTCCACTACTGAC-CAGGAAGATAGGAT-TCACCATCTTCAGCATA
1 CTCCACTGCTG-CTCAGGGAGATAAGATCT-ACAATCTTCAACCTA
* * *
30520560 TTCCACTGCTGACT-AGGGAGGTAGGA-CTTACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATC-TACAATCTTCAACCTA
*
30520604 TTCCACTGCT
1 CTCCACTGCT
30520614 AACCAGAGAG
Statistics
Matches: 942, Mismatches: 142, Indels: 168
0.75 0.11 0.13
Matches are distributed among these distances:
34 72 0.08
35 9 0.01
36 1 0.00
37 4 0.00
38 2 0.00
40 2 0.00
41 6 0.01
42 3 0.00
43 52 0.06
44 744 0.79
45 44 0.05
46 1 0.00
47 2 0.00
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (44 bp):
CTCCACTGCTGCTCAGGGAGATAAGATCTACAATCTTCAACCTA
Found at i:30519515 original size:176 final size:175
Alignment explanation
Indices: 30519305--30519688 Score: 596
Period size: 176 Copynumber: 2.2 Consensus size: 175
30519295 ATCTTTAATT
*
30519305 TTCAACCTACTCCACTGCTGCATAGGAAGATAAGGCTAA-TGGCTTAAATCTGCTTCCCTACTAC
1 TTCAACCTACTCCACTGCTGC-TAGGGAGATAAGGC-AAGTGGCTTAAATCTGCTTCCCTACTAC
* * *
30519369 CTTGGGAAGATAAGAGTCGCCGTCTTCGATCTGCTCCACTACT-GCTTAGGGAGGTAAGATCTGT
64 CTTGGGAAGATAAGAATCGCCGTCTTCGATCTGCTCCACTA-TAACTTAGGGAGATAAGATCTGT
30519433 AATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGG--TCTACAATC
128 AATTTTCAACCTACTCCACTGCTGCTCAGGGAGAT-AGGATTC-ACAATC
*
30519481 TTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCAAGTGGGTTAAATCTGCTTCCCTACTACC
1 TTCAACCTACTCCACTGCTGCT-AGGGAGATAAGGCAAGTGGCTTAAATCTGCTTCCCTACTACC
*
30519546 TTGGGAAGATAAGAATCGCCGTCTTCGATCTGCTCTACTATAACTTAGGGAGATAAGATCTGTAA
65 TTGGGAAGATAAGAATCGCCGTCTTCGATCTGCTCCACTATAACTTAGGGAGATAAGATCTGTAA
*
30519611 TTTTCAACCTACTTCACTGCTGCTCAGGGAGATAGGATTCACAATC
130 TTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTCACAATC
* *
30519657 TTCAACCTATTCCACTGTTGACTAGGGAGATA
1 TTCAACCTACTCCACTGCTG-CTAGGGAGATA
30519689 GGACTCACAA
Statistics
Matches: 193, Mismatches: 9, Indels: 12
0.90 0.04 0.06
Matches are distributed among these distances:
175 7 0.04
176 182 0.94
177 4 0.02
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.28
Consensus pattern (175 bp):
TTCAACCTACTCCACTGCTGCTAGGGAGATAAGGCAAGTGGCTTAAATCTGCTTCCCTACTACCT
TGGGAAGATAAGAATCGCCGTCTTCGATCTGCTCCACTATAACTTAGGGAGATAAGATCTGTAAT
TTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTCACAATC
Found at i:30519688 original size:132 final size:131
Alignment explanation
Indices: 30519592--30520627 Score: 735
Period size: 132 Copynumber: 8.1 Consensus size: 131
30519582 ACTATAACTT
* *
30519592 AGGGAGATAAGATCTGT-AATTTTCAACCTACTT-CACTGCTG-CTCAGGGAGATAGGATTCACA
1 AGGGAGATAAGA-CT-TAAATCTTCAACCTA-TTCCACTGCTGAC-CAGGGAGATAGGACTCACA
* * * * *
30519654 ATCTTCAACCTATTCCACTGTTGACTAGGGAGATAGGACTCACAATCTTCAACCTACTCCACTGC
62 ATCTTCAACCTATTCCACTGCTGACCAGGGAGATAAGAATCACAATCTTCAACCTACTCCACTGA
*
30519719 TGACC
127 TAACC
* *
30519724 AGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGTACTCACAATC
1 AGGGAGATAAGACTTA-AATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATC
* * * * * * *
30519789 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCAGCCTATTCCATTGCTGA
65 TTCAACCTATTCCACTGCTGACCAGGGAGATAAGAATCACAATCTTCAACCTACTCCACTGATAA
30519854 CC
130 CC
* * * *
30519856 AGGGAGAT-AG-----AA--TTC-ACCTATTCCACTGCTGGCCAGGGAGATAGAACTTACAATAT
1 AGGGAGATAAGACTTAAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCT
* * * ** **** * * *
30519912 TCAACTTATTCCACTACTGACTAGGGAGATAAGGCT-AGTGGCTTAAATCTGCCTCC-CT-ACT-
66 TCAACCTATTCCACTGCTGACCAGGGAGATAAGAATCACAATCTTCAACCT-ACTCCACTGA-TA
30519973 ACC
129 ACC
* ** * * ** * * * *
30519976 TTGGGAAGATAAGA-TTCACCGTCTTCGATCTGCTCTACTACTG-CTTAGGGAGATAAGA-TCTA
1 -AGGG-AGATAAGACTT-A-AATCTTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGACTC-A
* * * * * * * *
30520038 TAATTTTAAACCTACTCCACTGCTG-CTCAGGGAGATAGGATTCAGAATCTTCAACCTATTCCAC
60 CAATCTTCAACCTATTCCACTGCTGAC-CAGGGAGATAAGAATCACAATCTTCAACCTACTCCAC
* *
30520102 TGTTGACC
124 TGATAACC
* * * * *
30520110 AGGGAGATAGGA--T---TC-T---CCTATTCCACTACTAACCAGGGATATAGGACTTACAATCT
1 AGGGAGATAAGACTTAAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCT
* * * * * * *
30520166 TCAACTTATTCCACTGCTGACCAGGAAGATATGACTCACAATCTTCAACCTATTCCACTGCTGAC
66 TCAACCTATTCCACTGCTGACCAGGGAGATAAGAATCACAATCTTCAACCTACTCCACTGATAAC
30520231 C
131 C
* * * * * *
30520232 AGGGAGATAGGACTCAAAATCTTCAACCTATTCCACTACTGACTAGGGAGATATGACTTACAATC
1 AGGGAGATAAGACT-TAAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATC
* * * * *
30520297 TTCAACCTATTCCACTGCTGACCAGAGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTAA
65 TTCAACCTATTCCACTGCTGACCAGGGAGATAAGAATCACAATCTTCAACCTACTCCACTGATAA
30520362 CC
130 CC
* * * *
30520364 AGGGAGA-AAG-----GA--TTC-ACCTATTTCACTGCTGACTAGGGAGATAGGACTTACAATCT
1 AGGGAGATAAGACTTAAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCT
* * * * * *
30520420 TCAACCTATTCCACTGCTGACCAGGGAGATAAGACTTACAATCTGCAACCTATTCCACTGCTGAC
66 TCAACCTATTCCACTGCTGACCAGGGAGATAAGAATCACAATCTTCAACCTACTCCACTGATAAC
30520485 C
131 C
* * * * * *
30520486 AGGGAGATAGGACTCACAATCTTCAACCTATTCCACTACTGACCAGGAAGATAGGATTCACCATC
1 AGGGAGATAAGACTTA-AATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATC
* * * * * * * * *
30520551 TTCAGCATATTCCACTGCTGACTAGGGAGGTAGGACTTACAATCTTCAACCTATTCCACTGCTAA
65 TTCAACCTATTCCACTGCTGACCAGGGAGATAAGAATCACAATCTTCAACCTACTCCACTGATAA
30520616 CC
130 CC
*
30520618 AGAGAGATAA
1 AGGGAGATAA
30520628 AGCTTTGTGA
Statistics
Matches: 737, Mismatches: 119, Indels: 96
0.77 0.12 0.10
Matches are distributed among these distances:
120 3 0.00
121 12 0.02
122 274 0.37
123 13 0.02
125 4 0.01
126 2 0.00
128 2 0.00
129 2 0.00
130 1 0.00
131 17 0.02
132 388 0.53
133 16 0.02
134 3 0.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (131 bp):
AGGGAGATAAGACTTAAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCT
TCAACCTATTCCACTGCTGACCAGGGAGATAAGAATCACAATCTTCAACCTACTCCACTGATAAC
C
Found at i:30519717 original size:88 final size:88
Alignment explanation
Indices: 30519613--30520626 Score: 946
Period size: 88 Copynumber: 11.9 Consensus size: 88
30519603 ATCTGTAATT
*
30519613 TTCAACCTACTT-CACTGCTG-CTCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGTT
1 TTCAACCTA-TTCCACTGCTGAC-CAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCT
*
30519676 GACTAGGGAGATAGGACTCACAATC
64 GACCAGGGAGATAGGACTCACAATC
*
30519701 TTCAACCTACTCCACTGCTGACCAGGGAGATAGGACTT-ACAATCTTCAACCTATTCCACTGCTG
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTGCTG
*
30519765 ACCAGGGAGATAGTACTCACAATC
65 ACCAGGGAGATAGGACTCACAATC
* * *
30519789 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCAGCCTATTCCATTGCTGA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGA
30519854 CCAGGGAGATA-G------AA--
66 CCAGGGAGATAGGACTCACAATC
* * * * *
30519868 TTC-ACCTATTCCACTGCTGGCCAGGGAGATAGAACTT-ACAATATTCAACTTATTCCACTACTG
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTGCTG
* ****
30519931 ACTAGGGAGATAAGG-CT-AGTGGC
65 ACCAGGGAGAT-AGGACTCACAATC
* * ** * * * ** * * ** * *
30519954 TTAAATCTGCCTCC-CTACT-ACCTTGGGAAGATAAGATTCACCGTCTTCGATCTGCTCTACTAC
1 TTCAACCT-ATTCCACTGCTGACC-AGGG-AGATAGGATTCACAATCTTCAACCTATTCCACTGC
* * * *
30520017 TG-CTTAGGGAGATAAGA-TCTATAATT
63 TGAC-CAGGGAGATAGGACTC-ACAATC
* * * *
30520043 TTAAACCTACTCCACTGCTG-CTCAGGGAGATAGGATTCAGAATCTTCAACCTATTCCACTGTTG
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTG
30520107 ACCAGGGAGATAGGA-T-----TC
65 ACCAGGGAGATAGGACTCACAATC
* * * *
30520125 -T---CCTATTCCACTACTAACCAGGGATATAGGACTT-ACAATCTTCAACTTATTCCACTGCTG
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTGCTG
* *
30520185 ACCAGGAAGATATGACTCACAATC
65 ACCAGGGAGATAGGACTCACAATC
* * *
30520209 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCAAAATCTTCAACCTATTCCACTACTGA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGA
* * *
30520274 CTAGGGAGATATGACTTACAATC
66 CCAGGGAGATAGGACTCACAATC
* * *
30520297 TTCAACCTATTCCACTGCTGACCAGAGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTAA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGA
*
30520362 CCAGGGAGAAAGG-------A--
66 CCAGGGAGATAGGACTCACAATC
* *
30520376 TTC-ACCTATTTCACTGCTGACTAGGGAGATAGGACTT-ACAATCTTCAACCTATTCCACTGCTG
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTGCTG
* *
30520439 ACCAGGGAGATAAGACTTACAATC
65 ACCAGGGAGATAGGACTCACAATC
* * *
30520463 TGCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTACTGA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGA
* * *
30520528 CCAGGAAGATAGGATTCACCATC
66 CCAGGGAGATAGGACTCACAATC
* * * * *
30520551 TTCAGCATATTCCACTGCTGACTAGGGAGGTAGGACTT-ACAATCTTCAACCTATTCCACTGCTA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTGCTG
*
30520615 ACCAGAGAGATA
65 ACCAGGGAGATA
30520627 AAGCTTTGTG
Statistics
Matches: 759, Mismatches: 115, Indels: 104
0.78 0.12 0.11
Matches are distributed among these distances:
78 185 0.24
79 13 0.02
80 1 0.00
81 4 0.01
82 1 0.00
84 2 0.00
85 2 0.00
86 4 0.01
87 22 0.03
88 503 0.66
89 21 0.03
90 1 0.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (88 bp):
TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGA
CCAGGGAGATAGGACTCACAATC
Found at i:30519886 original size:34 final size:35
Alignment explanation
Indices: 30519833--30519901 Score: 113
Period size: 34 Copynumber: 2.0 Consensus size: 35
30519823 ACTCACAATC
*
30519833 TTCAGCCTATTCCATTGCTGACCAGGGAGATAGAA
1 TTCAGCCTATTCCACTGCTGACCAGGGAGATAGAA
*
30519868 TTCA-CCTATTCCACTGCTGGCCAGGGAGATAGAA
1 TTCAGCCTATTCCACTGCTGACCAGGGAGATAGAA
30519902 CTTACAATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 28 0.88
35 4 0.12
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (35 bp):
TTCAGCCTATTCCACTGCTGACCAGGGAGATAGAA
Found at i:30520385 original size:166 final size:167
Alignment explanation
Indices: 30520126--30520627 Score: 592
Period size: 166 Copynumber: 2.9 Consensus size: 167
30520116 ATAGGATTCT
* * * * * * * *
30520126 CCTATTCCACTACTAACCAGGGATATAGGACTTACAATCTTCAACTTATTCCACTGCTGACCAGG
1 CCTATTCCACTGCTGACCAGAGAGATAGGACTCACAATCTTCAACCTATTCCACTACTAACCAGG
* * * * *
30520191 AAGATATGACTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCAAAATCTTC
66 AAGAAAGGA-T-----TC--C-ACCTATTCCACTGCTGACTAGGGAGATAGGACTTACAATCTTC
* * *
30520256 AACCTATTCCACTACTGACTAGGGAGATATGACTTACAATCTTCAA
122 AACCTATTCCACTACTGACCAGGGAGATAAGACTTACAATCTGCAA
*
30520302 CCTATTCCACTGCTGACCAGAGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTAACCAGG
1 CCTATTCCACTGCTGACCAGAGAGATAGGACTCACAATCTTCAACCTATTCCACTACTAACCAGG
* *
30520367 GAGAAAGGATT-CACCTATTTCACTGCTGACTAGGGAGATAGGACTTACAATCTTCAACCTATTC
66 AAGAAAGGATTCCACCTATTCCACTGCTGACTAGGGAGATAGGACTTACAATCTTCAACCTATTC
*
30520431 CACTGCTGACCAGGGAGATAAGACTTACAATCTGCAA
131 CACTACTGACCAGGGAGATAAGACTTACAATCTGCAA
* *
30520468 CCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTACTGACCAGG
1 CCTATTCCACTGCTGACCAGAGAGATAGGACTCACAATCTTCAACCTATTCCACTACTAACCAGG
* *
30520533 AAGATAGGATTCACCATCTTCAGCATATTCCACTGCTGACTAGGGAGGTAGGACTTACAATCTTC
66 AAGAAAGGATT--CCA----C--C-TATTCCACTGCTGACTAGGGAGATAGGACTTACAATCTTC
* * *
30520598 AACCTATTCCACTGCTAACCAGAGAGATAA
122 AACCTATTCCACTACTGACCAGGGAGATAA
30520628 AGCTTTGTGA
Statistics
Matches: 289, Mismatches: 27, Indels: 20
0.86 0.08 0.06
Matches are distributed among these distances:
166 152 0.53
167 1 0.00
169 2 0.01
170 1 0.00
173 1 0.00
175 2 0.01
176 130 0.45
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (167 bp):
CCTATTCCACTGCTGACCAGAGAGATAGGACTCACAATCTTCAACCTATTCCACTACTAACCAGG
AAGAAAGGATTCCACCTATTCCACTGCTGACTAGGGAGATAGGACTTACAATCTTCAACCTATTC
CACTACTGACCAGGGAGATAAGACTTACAATCTGCAA
Found at i:30520391 original size:34 final size:34
Alignment explanation
Indices: 30520345--30520409 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
30520335 ACAATCTTCA
30520345 ACCTATTCCACTGCTAACCAGGGAGAAAGGATTC
1 ACCTATTCCACTGCTAACCAGGGAGAAAGGATTC
* * * *
30520379 ACCTATTTCACTGCTGACTAGGGAGATAGGA
1 ACCTATTCCACTGCTAACCAGGGAGAAAGGA
30520410 CTTACAATCT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (34 bp):
ACCTATTCCACTGCTAACCAGGGAGAAAGGATTC
Found at i:30520643 original size:254 final size:254
Alignment explanation
Indices: 30519618--30520629 Score: 1166
Period size: 254 Copynumber: 4.0 Consensus size: 254
30519608 TAATTTTCAA
* * *
30519618 CCTACTTCACTGCTG-CTCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTGTTGACTA
1 CCTATTTCACTGCTGAC-CAGGGAGATAGGACTT-ACAATCTTCAACCTATTCCACTGCTGACCA
* *
30519681 GGGAGATAGGACTCACAATCTTCAACCTACTCCACTGCTGACCAGGGAGATAGGACTTACAATCT
64 GGGAGATAAGACTCACAATCTTCAACCTACTCCACTGCTGACCAGGGAGATAGGACTCACAATCT
* * *
30519746 TCAACCTATTCCACTGCTGACCAGGGAGATAGTACTCACAATCTTCAACCTATTCCACTGCTGAC
129 TCAACCTATTCCACTACTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGAC
* * * *
30519811 CAGGGAGATAGGACTCACAATCTTCAGCCTATTCCATTGCTGACCAGGGAGATAGA-ATTC
194 CAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTAACCAGGGAGATAAAGATTC
* * * * * * *
30519871 ACCTATTCCACTGCTGGCCAGGGAGATAGAACTTACAATATTCAACTTATTCCACTACTGACTAG
1 -CCTATTTCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCAG
* **** * * * * * * * **
30519936 GGAGATAAGGCT-AGTGGCTTAAATCTGCCTCC-CTACT-ACCTTGGGAAGATAAGATTCACCGT
65 GGAGATAAGACTCACAATCTTCAACCT-ACTCCACTGCTGACC-AGGG-AGATAGGACTCACAAT
* * ** * * * * * * *
30519998 CTTCGATCTGCTCTACTACTG-CTTAGGGAGATAAGA-TCTATAATTTTAAACCTACTCCACTGC
127 CTTCAACCTATTCCACTACTGAC-CAGGGAGATAGGATTC-ACAATCTTCAACCTATTCCACTGC
* * * * *
30520061 TG-CTCAGGGAGATAGGATTCAGAATCTTCAACCTATTCCACTGTTGACCAGGGAGAT-AGGATT
190 TGAC-CAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTAACCAGGGAGATAAAGATT
30520124 C
254 C
* * * * *
30520125 TCCTATTCCACTACTAACCAGGGATATAGGACTTACAATCTTCAACTTATTCCACTGCTGACCAG
1 -CCTATTTCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCAG
* * * *
30520190 GAAGATATGACTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCAAAATCTT
65 GGAGATAAGACTCACAATCTTCAACCTACTCCACTGCTGACCAGGGAGATAGGACTCACAATCTT
* *
30520255 CAACCTATTCCACTACTGACTAGGGAGATATGACTT-ACAATCTTCAACCTATTCCACTGCTGAC
130 CAACCTATTCCACTACTGACCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTGCTGAC
* *
30520319 CAGAGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTAACCAGGGAGA-AAGGATTC
194 CAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTAACCAGGGAGATAAAGATTC
*
30520379 ACCTATTTCACTGCTGACTAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCAG
1 -CCTATTTCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCAG
* * *
30520444 GGAGATAAGACTTACAATCTGCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTT
65 GGAGATAAGACTCACAATCTTCAACCTACTCCACTGCTGACCAGGGAGATAGGACTCACAATCTT
* * * * *
30520509 CAACCTATTCCACTACTGACCAGGAAGATAGGATTCACCATCTTCAGCATATTCCACTGCTGACT
130 CAACCTATTCCACTACTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACC
* * *
30520574 AGGGAGGTAGGACTTACAATCTTCAACCTATTCCACTGCTAACCAGAGAGATAAAG
195 AGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTAACCAGGGAGATAAAG
30520630 CTTTGTGATT
Statistics
Matches: 630, Mismatches: 109, Indels: 37
0.81 0.14 0.05
Matches are distributed among these distances:
252 3 0.00
253 21 0.03
254 579 0.92
255 23 0.04
256 4 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (254 bp):
CCTATTTCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCAGG
GAGATAAGACTCACAATCTTCAACCTACTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTC
AACCTATTCCACTACTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCA
GGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTAACCAGGGAGATAAAGATTC
Found at i:30521922 original size:11 final size:11
Alignment explanation
Indices: 30521908--30521946 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
30521898 ATTTTTTTTC
30521908 TTTTTTGGTTT
1 TTTTTTGGTTT
*
30521919 TTTTGT-GTTT
1 TTTTTTGGTTT
*
30521929 TTTTTGGGTTT
1 TTTTTTGGTTT
30521940 TTTTTTG
1 TTTTTTG
30521947 AATTGGATCT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
10 8 0.35
11 15 0.65
ACGTcount: A:0.00, C:0.00, G:0.21, T:0.79
Consensus pattern (11 bp):
TTTTTTGGTTT
Found at i:30527120 original size:23 final size:22
Alignment explanation
Indices: 30527080--30527123 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
30527070 AAATTATAAA
*
30527080 ATATAAAAATATATATATGTAC
1 ATATAAAAAAATATATATGTAC
30527102 ATATAAGAAAAATATATATGTA
1 ATATAA-AAAAATATATATGTA
30527124 AGTAAATTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.34
Consensus pattern (22 bp):
ATATAAAAAAATATATATGTAC
Found at i:30527865 original size:19 final size:19
Alignment explanation
Indices: 30527841--30527896 Score: 76
Period size: 21 Copynumber: 2.8 Consensus size: 19
30527831 AATCATATAT
30527841 TCTAAGATTCCATATCATA
1 TCTAAGATTCCATATCATA
*
30527860 TCTAAGATTGCATATATCATA
1 TCTAAGATT-C-CATATCATA
*
30527881 TCTAAGATTGCATATC
1 TCTAAGATTCCATATC
30527897 CTTGAAAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 14 0.44
20 1 0.03
21 17 0.53
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.38
Consensus pattern (19 bp):
TCTAAGATTCCATATCATA
Found at i:30527878 original size:21 final size:21
Alignment explanation
Indices: 30527852--30527895 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
30527842 CTAAGATTCC
30527852 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
30527873 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
30527894 AT
1 AT
30527896 CCTTGAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.39
Consensus pattern (21 bp):
ATATCATATCTAAGATTGCAT
Found at i:30528677 original size:88 final size:89
Alignment explanation
Indices: 30528575--30528860 Score: 251
Period size: 88 Copynumber: 3.2 Consensus size: 89
30528565 ATCTGTAATT
* * * *
30528575 TTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGT-TAGTGGCTTAAATCTCCTTCCCTACTAC
1 TTCAATCTGCTCCACTACTGCTCAGGGAGATAAGGTCTAGTGGCTTAAATCTACTTCCCTACTAC
*
30528639 CTTGGGAAGATAAGATTCACCGTC
66 CTTGGGAAGATAAGAATCACCGTC
* * * * *** * * *
30528663 TTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCT-GTAATTTTCAACCTAC-TCCACTGCT
1 TTCAATCTGCTCCACTACTGCTCAGGGAGATAAGGTCTAGT-GGCTTAAATCTACTTCC-CTACT
* * * * **
30528726 -GCTTAGGCAGATAAG-GTCTACAATC
64 ACCTTGGGAAGATAAGAATC-ACCGTC
* * *
30528751 TTCAACCTACTCCACTACTGCTCAGGGAGATAA-GTCTAGTGGCTTAAATCTGCTTCCCTACTAC
1 TTCAATCTGCTCCACTACTGCTCAGGGAGATAAGGTCTAGTGGCTTAAATCTACTTCCCTACTAC
**
30528815 CTTGGGAAGATAAGAATCGTCGTC
66 CTTGGGAAGATAAGAATCACCGTC
* *
30528839 TTCTATCTGCTCTACTACTGCT
1 TTCAATCTGCTCCACTACTGCT
30528861 TAGGAATATA
Statistics
Matches: 145, Mismatches: 45, Indels: 16
0.70 0.22 0.08
Matches are distributed among these distances:
87 16 0.11
88 115 0.79
89 14 0.10
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (89 bp):
TTCAATCTGCTCCACTACTGCTCAGGGAGATAAGGTCTAGTGGCTTAAATCTACTTCCCTACTAC
CTTGGGAAGATAAGAATCACCGTC
Found at i:30528757 original size:176 final size:176
Alignment explanation
Indices: 30528540--30528960 Score: 557
Period size: 176 Copynumber: 2.4 Consensus size: 176
30528530 CTTCAATTTG
* ** ** *
30528540 CTCCACTGCAGCTTAGAGAGATAAAATCTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGAGA
1 CTCCACTGCTGCTTAG-GAGATAAGGTCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGA
*
30528605 TAAGGT-TAGTGGCTTAAATCTCCTTCCCTACTACCTTGGGAAGATAAGATTCACCGTCTTCGAT
65 TAAGGTCTAGTGGCTTAAATCTCCTTCCCTACTACCTTGGGAAGATAAGAATCACCGTCTTCGAT
30528669 CTGCTCCACTACTGCTTAAGG-AGATAAGATCTGTAATTTTCAACCTA
130 CTGCTCCACTACTGCTT-AGGAAGATAAGATCTGTAATTTTCAACCTA
*
30528716 CTCCACTGCTGCTTAGGCAGATAAGGTCTACAATCTTCAACCTACTCCACTACTGCTCAGGGAGA
1 CTCCACTGCTGCTTAGG-AGATAAGGTCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGA
* ** *
30528781 TAA-GTCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGAATCGTCGTCTTCTAT
65 TAAGGTCTAGTGGCTTAAATCTCCTTCCCTACTACCTTGGGAAGATAAGAATCACCGTCTTCGAT
* *
30528845 CTGCTCTACTACTGCTTAGGAATATAAGATCTGTAATTTTCAACCTA
130 CTGCTCCACTACTGCTTAGGAAGATAAGATCTGTAATTTTCAACCTA
* * * * * *
30528892 CTCCACTGCTGCTCAGGGAGA-GAGGAT-TCACAATCTTTAACATATTACACTGCTGAC-CAGGG
1 CTCCACTGCTGCTTA-GGAGATAAGG-TCT-ACAATCTTCAACCTACTCCACTGCTG-CTCAGGG
30528954 AGATAAG
62 AGATAAG
30528961 ATTCATAATC
Statistics
Matches: 216, Mismatches: 21, Indels: 15
0.86 0.08 0.06
Matches are distributed among these distances:
175 10 0.05
176 203 0.94
177 3 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29
Consensus pattern (176 bp):
CTCCACTGCTGCTTAGGAGATAAGGTCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGAT
AAGGTCTAGTGGCTTAAATCTCCTTCCCTACTACCTTGGGAAGATAAGAATCACCGTCTTCGATC
TGCTCCACTACTGCTTAGGAAGATAAGATCTGTAATTTTCAACCTA
Found at i:30528782 original size:132 final size:130
Alignment explanation
Indices: 30528509--30528784 Score: 315
Period size: 132 Copynumber: 2.1 Consensus size: 130
30528499 CACTACAACT
* * *
30528509 TCAGGGAGATAAGATTACTGGCTTCAATTTGCTCCACTGCAGCTTAGAGAGATAAAATCTGTAAT
1 TCAGGGAGATAAGATTACCGGCTTCAATCTGCTCCACTACAGCTTAGAGAGATAAAATCTGTAAT
* *** * *
30528574 TTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGTTAGTGGCTTAAATCTCCTTCCCTACTAC
66 TTTCAACCTACTCCACTGCTGCTCAGGCAGATAAGGTTACAAGCTTAAACCTACTTCCCTACTAC
* * * * *
30528639 -CTTGGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTA-AGGAGATAAGATCTG
1 TC-AGGG-AGATAAGATT-ACCGGCTTCAATCTGCTCCACTACAGCTTAGA-GAGATAAAATCTG
* * *
30528702 TAATTTTCAACCTACTCCACTGCTGCTTAGGCAGATAAGGTCTACAATCTTCAACCTAC-TCCAC
62 TAATTTTCAACCTACTCCACTGCTGCTCAGGCAGATAAGGT-TACAAGCTTAAACCTACTTCC-C
*
30528766 TACTGC
125 TACTAC
30528772 TCAGGGAGATAAG
1 TCAGGGAGATAAG
30528785 TCTAGTGGCT
Statistics
Matches: 120, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
129 1 0.01
130 3 0.03
131 11 0.09
132 85 0.71
133 19 0.16
134 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (130 bp):
TCAGGGAGATAAGATTACCGGCTTCAATCTGCTCCACTACAGCTTAGAGAGATAAAATCTGTAAT
TTTCAACCTACTCCACTGCTGCTCAGGCAGATAAGGTTACAAGCTTAAACCTACTTCCCTACTAC
Found at i:30528904 original size:44 final size:44
Alignment explanation
Indices: 30528672--30528904 Score: 170
Period size: 44 Copynumber: 5.3 Consensus size: 44
30528662 CTTCGATCTG
*
30528672 CTCCACTACTGCTTAAGG-AGATAAGATCTGTAATTTTCAACCTA
1 CTCCACTACTGCTT-AGGAAGATAAGATCTGTAATCTTCAACCTA
* * * **
30528716 CTCCACTGCTGCTTAGGCAGATAAGGTCTACAATCTTCAACCTA
1 CTCCACTACTGCTTAGGAAGATAAGATCTGTAATCTTCAACCTA
* * ** * * *
30528760 CTCCACTACTGCTCAGGGAGATAAG-TCTAGT-GGCTTAAATCTG
1 CTCCACTACTGCTTAGGAAGATAAGATCT-GTAATCTTCAACCTA
* * ** * * *
30528803 CTTCC-CTACTACCTTGGGAAGATAAGAATC-GTCGTCTTCTATCTG
1 C-TCCACTACT-GCTTAGGAAGATAAG-ATCTGTAATCTTCAACCTA
* * *
30528848 CTCTACTACTGCTTAGGAATATAAGATCTGTAATTTTCAACCTA
1 CTCCACTACTGCTTAGGAAGATAAGATCTGTAATCTTCAACCTA
*
30528892 CTCCACTGCTGCT
1 CTCCACTACTGCT
30528905 CAGGGAGAGA
Statistics
Matches: 146, Mismatches: 34, Indels: 18
0.74 0.17 0.09
Matches are distributed among these distances:
43 22 0.15
44 107 0.73
45 15 0.10
46 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (44 bp):
CTCCACTACTGCTTAGGAAGATAAGATCTGTAATCTTCAACCTA
Found at i:30528945 original size:44 final size:44
Alignment explanation
Indices: 30528895--30529010 Score: 144
Period size: 44 Copynumber: 2.6 Consensus size: 44
30528885 CAACCTACTC
* *
30528895 CACTGCTG-CTCAGGGAGAGAGGATTCACAATCTTTAACATATTA
1 CACTGCTGAC-CAGGGAGATAGGATTCACAATCTTCAACATATTA
* * * *
30528939 CACTGCTGACCAGGGAGATAAGATTCATAATCTTCAACCTATTC
1 CACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACATATTA
* *
30528983 CACTACTGACAAGGGAGATAGGATTCAC
1 CACTGCTGACCAGGGAGATAGGATTCAC
30529011 CTATTTCATT
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
44 60 0.98
45 1 0.02
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (44 bp):
CACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACATATTA
Found at i:30529112 original size:254 final size:254
Alignment explanation
Indices: 30528773--30529290 Score: 797
Period size: 254 Copynumber: 2.0 Consensus size: 254
30528763 CACTACTGCT
* *
30528773 CAGGGAGATAAGTCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGAATCGTCGT
1 CAGGGAGATAAGGCTACTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGAATCGTCGT
* * * *
30528838 CTTCTATCTGCTCTACTACTGCTTAGGAATATAAGATCTGTAATTTTCAACCTACTCCACTGCTG
66 CTTCGATCTGCTCCACTACTGCTTAGGAAGATAAGATCTGTAATTTTCAACCTACTCCACCGCTG
* * *
30528903 CTCAGGGAGAGAGGATTCACAATCTTTAACATATTAC-ACTGCTGACCAGGGAGATAAGATTCAT
131 CTCAGGGAGAGAGAATTCACAATCTTCAACATATT-CTACTGCTGACCAGGGAGATAAGATTCAC
* * *
30528967 AATCTTCAACCTATTCCACTACTGACAAGGGAGATAGGATTCACCTATTTCATTGTTGAC
195 AATCTTCAACCTATTCCACTACTGACAAGGGAGATAGGATTCACCTATTCCACTGATGAC
*
30529027 CAGGGAGATAAGGCTACTGGCTTAAATTTGCTTCCCTACTACCTTGGGAAGATAAGAATCG-CTG
1 CAGGGAGATAAGGCTACTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGAATCGTC-G
* *
30529091 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTACTTCACCGCT
65 TCTTCGATCTGCTCCACTACTGCTTAGGAAGATAAGATCTGTAATTTTCAACCTACTCCACCGCT
* * * *
30529156 GCTCAGGGAGATAGAATTCACAATCTTCAGCCTATTCTACTGCTGACCAGGGAGATAGGATTCAC
130 GCTCAGGGAGAGAGAATTCACAATCTTCAACATATTCTACTGCTGACCAGGGAGATAAGATTCAC
* * * *
30529221 AATCTTCGACCTATTCCACTGCTGACCAGGGAGATAGGATTCACTTATTCCACTGATGAC
195 AATCTTCAACCTATTCCACTACTGACAAGGGAGATAGGATTCACCTATTCCACTGATGAC
30529281 CAGGGAGATA
1 CAGGGAGATA
30529291 GGATTCACCT
Statistics
Matches: 239, Mismatches: 23, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
253 2 0.01
254 237 0.99
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (254 bp):
CAGGGAGATAAGGCTACTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGAATCGTCGT
CTTCGATCTGCTCCACTACTGCTTAGGAAGATAAGATCTGTAATTTTCAACCTACTCCACCGCTG
CTCAGGGAGAGAGAATTCACAATCTTCAACATATTCTACTGCTGACCAGGGAGATAAGATTCACA
ATCTTCAACCTATTCCACTACTGACAAGGGAGATAGGATTCACCTATTCCACTGATGAC
Found at i:30529207 original size:44 final size:43
Alignment explanation
Indices: 30529137--30532534 Score: 661
Period size: 44 Copynumber: 79.7 Consensus size: 43
30529127 ATCTGTAATT
*
30529137 TTCAACCTACTT-CACCGCTG-CTCAGGGAGATAGAATTCACAATC
1 TTCAACCTA-TTCCACTGCTGAC-CAGGGAGATAGAATT-ACAATC
* * *
30529181 TTCAGCCTATTCTACTGCTGACCAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* *
30529225 TTCGACCTATTCCACTGCTGACCAGGGAGATAGGATT-C-A-C
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
* *
30529265 -T-----TATTCCACTGATGACCAGGGAGATAG------GA--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
* *
30529294 TTC-ACCTATTCCACTGCTAACCAGGGAGATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * * *
30529337 TTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAACC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * * *
30529381 TTCAACCTATTCCACTGCTGGCTAAGGAGATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * * ** ****
30529425 TTCAACCTGTTCCACTACTAACCAGGGAGATA-AGGCTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* ** * * * * **
30529468 TTAAATTTGCTTCC-CTACT-ACCTTGGGAAGATA-AGATTCGCCGTC
1 TTCAACCT-ATTCCACTGCTGACC-AGGG-AGATAGA-ATT-ACAATC
* * ** * * ** *
30529513 TTCGATCTGCTCCACTACT-ACTTTA-GGAGATA-AGATCTGTAATT
1 TTCAACCTATTCCACTGCTGAC--CAGGGAGATAGA-AT-TACAATC
* * *
30529557 TTCAACCTACTCCACAGCTG-CTCAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGAATT-ACAATC
* * *
30529601 TTCAACCTATTCCATTGCTGACCAGGGGGATAGGATTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
*
30529645 TTCAACCTATTCCACTGCTGACCAGGGAGATAG------GA--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
* *
30529680 TTC-ACCTATTCCACTGCTAACCAGGGAGATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * * *
30529723 TTCAACCTATTCCACTGTTGATCAGGGAGATAGGACTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * * * *
30529767 TTCAACCTATTCCACTCCTGACTAGGGAGGTTGGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGA-GATAGAATTACAATC
* * ** ****
30529811 TTCAACCTGTTCCACTACTGACCAGGGAGATA-AGGCTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* * * * * ** **
30529854 TT-ACATCTGCTTCC-CTACT-ACCTTGGAAAGATAAGAATCGCCGTC
1 TTCA-ACCT-ATTCCACTGCTGACC-AGG-GAGAT-AGAATTACAATC
* ** ** * * * * * ** *
30529899 TTCGATTTGGTCTACTACTG-CTTAGAGAGATAAGATTTGTAATT
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGAT-AGAATTACAATC
* *
30529943 TTCAACCTACTCCACTGCTG-CTCAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGAATT-ACAATC
* * * * *
30529987 TTCAACCTCTTACACTACTGACCAGGCAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* * * * *
30530031 TTGAACCTATTCCACTACTGGCAAGGGAGATAGGATTGAC---C
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* * * * *
30530072 -T--A--T-TT-CACTACTGACTAGGCATATATGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* ** ****
30530109 TTCAACCTATTCCACTACTGACCAGGGAGATA-AGGCTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* * * * * * **
30530152 TTAAATCTTCTTCC-CTACT-ACCTTGGGAAGATA-AGATTCGCCGTC
1 TTCAA-CCTATTCCACTGCTGACC-AGGG-AGATAGA-ATT-ACAATC
* * ** * ** ** *
30530197 TTCGATCTGCTCCACTACTG-CTTTGGGAGATA-AGATCTGTAATT
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGA-AT-TACAATC
* * * *
30530241 TTCAACCTACTCCATTGCTG-CTCTGGGAGATAAGATTTACAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGAT-AGAATTACAATC
* *
30530285 TTCAACCTATTCCATTGCTGACCAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* * *
30530329 TTCAACCTATTCCACTACTGACCAAGGAGATAG------GA--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
* *
30530364 TTC-ACCTATTCCACTGCTGACCAGGAAGATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * *
30530407 TTCAACCTATTCCACTGTTGACCAGGGAGATAAGACTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGAT-AGAATTACAATC
* * ** *
30530451 TTTAACCAATTCCACTGCTTTCCAGGGAGATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* ** ****
30530495 TTCAACCTATTCCACTACTGACCAGGGAGATA-AGGCTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* * * * * * **
30530538 TTAAATCTCCTTCC-CTACT-ACCTCGGGAAGATA-AGATTCGCTGTC
1 TTCAACCT-ATTCCACTGCTGACC-AGGG-AGATAGA-ATT-ACAATC
* * ** * **
30530583 TTCGATCTGCTCCACTGCT-ACTTAGGGAGATA-AGATCTGTAAT-
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGA-AT-TACAATC
* * *
30530626 TGTCAACCTACTCCACTACTG-CTCAGGGAGAGA-AGATTCACAATC
1 T-TCAACCTATTCCACTGCTGAC-CAGGGAGATAGA-ATT-ACAATC
* * * * * *
30530671 TTTAACCTATTACACTACTGACCAAGGAGATAGGATTCATAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* * * **
30530715 TTCAACCTATTCCACTACT-AACAGGG-G--AG-A-GAGGA--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
* * ** ****
30530750 TTC-ACCTATTTCACTGTTGACCAGGGAGATA-AGGCTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* ** * * * * * *
30530792 TTAAATTTGCTTCC-TTACT-ACCTTGGGAAGATA-AGATTCGCTATC
1 TTCAACCT-ATTCCACTGCTGACC-AGGG-AGATAGA-ATT-ACAATC
* ** * * ** *
30530837 TTCGATCC-GCTGCACTGCT-ACTTAGGGAGATA-AGATCTGTAATT
1 TTC-AACCTATTCCACTGCTGAC-CAGGGAGATAGA-AT-TACAATC
* *
30530881 TTCAACCTACTT-CATTGTTG-CTCAGGGAGATAGAATTCACAATC
1 TTCAACCTA-TTCCACTGCTGAC-CAGGGAGATAGAATT-ACAATC
* *
30530925 TTCAGCCTATTCTACTGCTGACCAGGGAGATATG-ATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATT-ACAATC
* * *
30530969 TTCAACCTATTCGACTGCTGACTAGGGAGATAGGATT-C-A--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
* *
30531008 -T----CTATTCCACTGCTAACCAGGGAGATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* ** * *
30531047 TTAAACCTATTCCACTATTGACCAGGGAGATAGGACTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* *
30531091 TTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * ** ****
30531135 TTCAACCTGTTCCACTTCTGACCAGGGAGATA-AGGCTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* ** ** * * * * **
30531178 TTAAATTTGCTCCCCTACT-ACCTTGGGAAGATAAGAATCACCGTC
1 TTCAACCTATTCCACTGCTGACC-AGGG-AGAT-AGAATTACAATC
* ** ** * * * * * * ** *
30531223 TTCGATTTGGTCTACTACT-TCTTAGAGAGATAAGATTTGTAATT
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGAT-AGAATTACAATC
* * *
30531267 TTCAACCTACTCCACTGCTG-CTCAGGGACATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGAATT-ACAATC
** * * * *
30531311 CACAACCTCTTACACTGCTGACCAGGGAGATAGGATTCACAATA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* ** *
30531355 TTCAACCTATTTCACTGCTGAAAAGGGAGATAGGATTGAC---C
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* *
30531396 -T--A--T-TT-CACTGCTGACTAGGGAGATATGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* ** ****
30531433 TTCAACCTATTCCACTACTGACCAGGGAGATA-AGGCTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* * * * * * * **
30531476 TTACATCTTCTTCC-CTACT-ACCTTCGGAAGATATG-ATTCGCCGTC
1 TT-CAACCTATTCCACTGCTGACC--AGGGAGATA-GAATT-ACAATC
* ** * * ** ** *
30531521 TTCAATCTGCTCAACTACTG-CTTTGGGAGATA-AGATCTGTAATT
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGA-AT-TACAATC
* * * *
30531565 TTCAACCTACTCCATTGCTG-CTCTGGGAGATAAGATTTACAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGAT-AGAATTACAATC
* *
30531609 TTCAACCTATTCCATTGCTGACCAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* *
30531653 TTCAACCTATTCCACTGCTGACCAAGGAGATAG------GA--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
* * *
30531688 TTC-ACCTATTCCACTCCTGACCAGGGAGATAGGACTTAAAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * *
30531731 TTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * * *
30531775 TTTAACCAATTCCACTGCTTACCAGGGAGATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * * ** ****
30531819 TTCAACCTGTTGCACTACTGACCAGGGAGATA-AGGCTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* * * * * * ** *
30531862 TTAAATCTGCTTCC-CTACT-ACCTTGGGAAGATAAGAATCACCGTA
1 TTCAACCT-ATTCCACTGCTGACC-AGGG-AGAT-AGAATTACAATC
** ** ** * * * * ** * ** *
30531907 TTTGATTTGGTCTACTACAG-CTTAAAGAGATAAGATTTGTAATT
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGAT-AGAATTACAATC
** * *
30531951 TTCAACCTACACCACTGCTG-CTTAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGAATT-ACAATC
* * * *
30531995 TGCAACCTCTTACACTGCTGACCAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* * **
30532039 TTCAACCTATTCCACTACTGA-CA---AGAGAG-A-TAGGA--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
* * *
30532074 TGC-ACCTAGTT-CACTGCTGACTAGGGAGATATGACTTACAATC
1 TTCAACCTA-TTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* ** ****
30532117 TTCAACCTATTCCACTACTGACCAGGGAGATA-AGGCTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* * * * * **
30532160 TT-AAGTCTTCTTCC-CTACT-ACCTTGGGAAGATA-AGATTCGCCGTC
1 TTCAA--CCTATTCCACTGCTGACC-AGGG-AGATAGA-ATT-ACAATC
* * ** * ** ** *
30532205 TTCGATCTGCTCCACTACTG-CTTTGGGAGATA-AGATCTGTAATT
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGA-AT-TACAATC
* * *
30532249 TTCAACCTACTGCACTGCTG-CTCAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGAATT-ACAATC
* * *
30532293 TTCAACCTATTCCATTGCTGACCAGGGAGATAGGACTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* **
30532337 TTCAACCTATTCCACTGTTGACCAGGGAG--AG----AGGA--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
* **
30532372 TTC-ACCTATTCCACTGCTGACTAGGGAGATAGGACCTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * * *
30532415 TTCAACCTATTCCACTGTTGACCAGGGAGATACGACTCATAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
*
30532459 TTCAACCTATTCCACTGCTGACCAGGGAGATATGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
*
30532503 TTCAACCTATTCCACTACTGACCAGGGAGATA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA
30532535 AGGCTAGTGG
Statistics
Matches: 2505, Mismatches: 610, Indels: 478
0.70 0.17 0.13
Matches are distributed among these distances:
30 2 0.00
34 235 0.09
35 43 0.02
36 5 0.00
37 13 0.01
38 11 0.00
39 4 0.00
40 15 0.01
41 13 0.01
42 46 0.02
43 198 0.08
44 1746 0.70
45 167 0.07
46 7 0.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.28
Consensus pattern (43 bp):
TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
Found at i:30529275 original size:34 final size:34
Alignment explanation
Indices: 30529229--30529327 Score: 171
Period size: 34 Copynumber: 2.9 Consensus size: 34
30529219 ACAATCTTCG
30529229 ACCTATTCCACTGCTGACCAGGGAGATAGGATTC
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTC
* *
30529263 ACTTATTCCACTGATGACCAGGGAGATAGGATTC
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTC
*
30529297 ACCTATTCCACTGCTAACCAGGGAGATAGGA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGA
30529328 CTTACAATCT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 60 1.00
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.23
Consensus pattern (34 bp):
ACCTATTCCACTGCTGACCAGGGAGATAGGATTC
Found at i:30529528 original size:420 final size:423
Alignment explanation
Indices: 30528883--30529826 Score: 1263
Period size: 420 Copynumber: 2.2 Consensus size: 423
30528873 ATCTGTAATT
* * * * * * * *
30528883 TTCAACCTACTCCACTGCT-GCTCAGGGAGAGAGGATTCACAATCTTTAACATATTACACTGCTG
1 TTCAACCTATTCCACTGCTAAC-CAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTCCTG
* * * * * *
30528947 ACCAGGGAGATAAGATTCATAATCTTCAACCTATTCCACTACTGAC-AAGGGAGATAGGA-TT-C
65 ACCAGGGAGATAGGACTCACAACCTTCAACCTATTCCACTGCTGGCTAA-GGAGATAGGACTTAC
* * ** *
30529009 -A-C--CTA--T-TT-CATTGTTGACCAGGGAGATAAGGCTACTGGCTTAAATTTGCTTCCCTAC
129 AATCTTCAACCTGTTCCACTACTAACCAGGGAGATAAGGCTACTGGCTTAAATTTGCTTCCCTAC
* *
30529066 TACCTTGGGAAGATAAGAATCGCTGTCTTCGATCTGCTCCACTACTGC-TTAGGGAGATAAGATC
194 TACCTTGGGAAGATAAGAATCGCCGTCTTCGATCTGCTCCACTACTACTTTA-GGAGATAAGATC
* * * *
30529130 TGTAATTTTCAACCTACTTCACCGCTGCTCAGGGAGATAGAATTCACAATCTTCAGCCTATTCTA
258 TGTAATTTTCAACCTACTCCACAGCTGCTCAGGGAGATAGAATTCACAATCTTCAACCTATTCCA
*
30529195 CTGCTGACCAGGGAGATAGGATTCACAATCTTCGACCTATTCCACTGCTGACCAGGGAGATAGGA
323 CTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
* *
30529260 TTCACTTATTCCACTGATGACCAGGGAGATAGG-A-
388 TTCACCTATTCCACTGATAACCAGGGAGATAGGAAC
* **
30529294 TTC-ACCTATTCCACTGCTAACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGA
1 TTCAACCTATTCCACTGCTAACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTCCTGA
30529358 CCAGGGAGATAGGACTCACAACCTTCAACCTATTCCACTGCTGGCTAAGGAGATAGGACTTACAA
66 CCAGGGAGATAGGACTCACAACCTTCAACCTATTCCACTGCTGGCTAAGGAGATAGGACTTACAA
*
30529423 TCTTCAACCTGTTCCACTACTAACCAGGGAGATAAGGCTAGTGGCTTAAATTTGCTTCCCTACTA
131 TCTTCAACCTGTTCCACTACTAACCAGGGAGATAAGGCTACTGGCTTAAATTTGCTTCCCTACTA
*
30529488 CCTTGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTTAGGAGATAAGATCTGT
196 CCTTGGGAAGATAAGAATCGCCGTCTTCGATCTGCTCCACTACTACTTTAGGAGATAAGATCTGT
* *
30529553 AATTTTCAACCTACTCCACAGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCTATTCCATTG
261 AATTTTCAACCTACTCCACAGCTGCTCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTG
* *
30529618 CTGACCAGGGGGATAGGATTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTC
326 CTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTC
*
30529683 ACCTATTCCACTGCTAACCAGGGAGATAGGACTTACAATC
391 ACCTATTCCACTGATAACCAGGGAGATAGG------AA-C
* * *
30529723 TTCAACCTATTCCACTGTTGATCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTCCTGA
1 TTCAACCTATTCCACTGCTAACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTCCTGA
* * * * * *
30529788 CTAGGGAGGTTGGACTTACAATCTTCAACCTGTTCCACT
66 CCAGGGAGATAGGACTCACAACCTTCAACCTATTCCACT
30529827 ACTGACCAGG
Statistics
Matches: 462, Mismatches: 48, Indels: 27
0.86 0.09 0.05
Matches are distributed among these distances:
410 99 0.21
411 8 0.02
412 1 0.00
413 1 0.00
414 1 0.00
416 2 0.00
418 1 0.00
419 2 0.00
420 252 0.55
421 3 0.01
427 1 0.00
429 3 0.01
430 88 0.19
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (423 bp):
TTCAACCTATTCCACTGCTAACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTCCTGA
CCAGGGAGATAGGACTCACAACCTTCAACCTATTCCACTGCTGGCTAAGGAGATAGGACTTACAA
TCTTCAACCTGTTCCACTACTAACCAGGGAGATAAGGCTACTGGCTTAAATTTGCTTCCCTACTA
CCTTGGGAAGATAAGAATCGCCGTCTTCGATCTGCTCCACTACTACTTTAGGAGATAAGATCTGT
AATTTTCAACCTACTCCACAGCTGCTCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTG
CTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTC
ACCTATTCCACTGATAACCAGGGAGATAGGAAC
Found at i:30529692 original size:34 final size:34
Alignment explanation
Indices: 30529649--30529713 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
30529639 ACAATCTTCA
*
30529649 ACCTATTCCACTGCTGACCAGGGAGATAGGATTC
1 ACCTATTCCACTGCTAACCAGGGAGATAGGATTC
30529683 ACCTATTCCACTGCTAACCAGGGAGATAGGA
1 ACCTATTCCACTGCTAACCAGGGAGATAGGA
30529714 CTTACAATCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (34 bp):
ACCTATTCCACTGCTAACCAGGGAGATAGGATTC
Found at i:30529734 original size:78 final size:81
Alignment explanation
Indices: 30529600--30529842 Score: 294
Period size: 78 Copynumber: 3.0 Consensus size: 81
30529590 GATTCACAAT
* * *
30529600 CTTCAACCTATTCCATTGCTGACCAGGGGGATAGGATTTACAATCTTCAACCTATTCCACTGCTG
1 CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTG
30529665 ACCAGGGAGATAGG-A
66 ACCAGGGAGATAGGAA
* *
30529680 -TTC-ACCTATTCCACTGCTAACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTG
1 CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTG
*
30529743 ATCAGGGAGATAGGACTCACAA
66 ACCAGGGAGATAGG------AA
* * * * * *
30529765 TCTTCAACCTATTCCACTCCTGACTAGGGAGGTTGGACTTACAATCTTCAACCTGTTCCACTACT
1 -CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCT
30529830 GACCAGGGAGATA
65 GACCAGGGAGATA
30529843 AGGCTAGTGG
Statistics
Matches: 138, Mismatches: 15, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
78 68 0.49
79 3 0.02
85 1 0.01
87 3 0.02
88 63 0.46
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (81 bp):
CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTG
ACCAGGGAGATAGGAA
Found at i:30529751 original size:386 final size:385
Alignment explanation
Indices: 30529203--30530140 Score: 1419
Period size: 386 Copynumber: 2.5 Consensus size: 385
30529193 TACTGCTGAC
*
30529203 CAGGGAGATAGGATTCACAATCTTCGACCTATTCCACTGCTGACCAGGGAGATAGGA-TT-C-A-
1 CAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTTACAAT
*
30529264 C-T----TATTCCACTGATGACCAGGGAGATAGGATTCACCTATTCCACTGCTAACCAGGGAGAT
66 CTTAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACCTATTCCACTGCTAACCAGGGAGAT
30529324 AGGACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAACCTTCAACCT
131 AGGACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAACCTTCAACCT
* *
30529389 ATTCCACTGCTGGCTAAGGAGATAGGACTTACAATCTTCAACCTGTTCCACTACTAACCAGGGAG
196 ATTCCACTCCTGACTAAGGAGATAGGACTTACAATCTTCAACCTGTTCCACTACTAACCAGGGAG
* * *
30529454 ATAAGGCTAGTGGCTTAAATTTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTCGAT
261 ATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGAAAGATAAGAATCGCCGTCTTCGAT
30529519 CTGCTCCACTACTACTTTAG-GAGATAAGATCTGTAATTTTCAACCTACTCCACAGCTGCT
326 CTGCTCCACTACTAC-TTAGAGAGATAAGATCTGTAATTTTCAACCTACTCCACAGCTGCT
* *
30529579 CAGGGAGATAGGATTCACAATCTTCAACCTATTCCATTGCTGACCAGGGGGATAGGATTTACAAT
1 CAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTTACAAT
30529644 CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACCTATTCCACTGCTAACCAGGGAGA
66 CTT-AACCTATTCCACTGCTGACCAGGGAGATAGGATTCACCTATTCCACTGCTAACCAGGGAGA
* *
30529709 TAGGACTTACAATCTTCAACCTATTCCACTGTTGATCAGGGAGATAGGACTCACAATCTTCAACC
130 TAGGACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAACCTTCAACC
* * * *
30529774 TATTCCACTCCTGACTAGGGAGGTTGGACTTACAATCTTCAACCTGTTCCACTACTGACCAGGGA
195 TATTCCACTCCTGACTAAGGAGATAGGACTTACAATCTTCAACCTGTTCCACTACTAACCAGGGA
*
30529839 GATAAGGCTAGTGGCTTACATCTGCTTCCCTACTACCTTGGAAAGATAAGAATCGCCGTCTTCGA
260 GATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGAAAGATAAGAATCGCCGTCTTCGA
* * * * * *
30529904 TTTGGTCTACTACTGCTTAGAGAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTGCT
325 TCTGCTCCACTACTACTTAGAGAGATAAGATCTGTAATTTTCAACCTACTCCACAGCTGCT
* * * * *
30529965 CAGGGAGATAGGATTCACAATCTTCAACCTCTTACACTACTGACCAGGCAGATAGGATTCACAAT
1 CAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTTACAAT
* * * * * * * * * *
30530030 CTTGAACCTATTCCACTACTGGCAAGGGAGATAGGATTGACCTATTTCACTACTGACTAGGCATA
66 CTT-AACCTATTCCACTGCTGACCAGGGAGATAGGATTCACCTATTCCACTGCTAACCAGGGAGA
* **
30530095 TATGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATA
130 TAGGACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATA
30530141 AGGCTAGTGG
Statistics
Matches: 507, Mismatches: 44, Indels: 12
0.90 0.08 0.02
Matches are distributed among these distances:
376 54 0.11
377 2 0.00
378 1 0.00
379 1 0.00
380 1 0.00
381 1 0.00
385 4 0.01
386 443 0.87
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (385 bp):
CAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTTACAAT
CTTAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACCTATTCCACTGCTAACCAGGGAGAT
AGGACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAACCTTCAACCT
ATTCCACTCCTGACTAAGGAGATAGGACTTACAATCTTCAACCTGTTCCACTACTAACCAGGGAG
ATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGAAAGATAAGAATCGCCGTCTTCGAT
CTGCTCCACTACTACTTAGAGAGATAAGATCTGTAATTTTCAACCTACTCCACAGCTGCT
Found at i:30529949 original size:298 final size:288
Alignment explanation
Indices: 30529645--30530440 Score: 923
Period size: 298 Copynumber: 2.7 Consensus size: 288
30529635 ATTTACAATC
* *
30529645 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGATTCACCTATTCCACTGCTAACCAGGGAGA
1 TTCAACCTACTCCACTGCTG-CTCAGGGAGATAGGATTCACCTATTCCACTGCTGACCAGGGAGA
** *
30529709 TAGGACTT-ACAATCTTCAACCTATTCCACTGTTGATCAGGGAGATAGGACTCACAATCTTCAAC
65 TAGGA-TTCACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAGG-------A--TTC-AC
* * * *
30529773 CTATTCCACTCCTGACTAGGGAGGTTGGACTTACAATCTTCAACCTGTTCCACTACTGACCAGGG
119 CTATTCCACTACTGACTAGGAAGATTGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGG
*
30529838 AGATAAGGCTAGTGGCTTACATCTGCTTCCCTACTACCTTGGAAAGATAAGAATCGCCGTCTTCG
184 AGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGAAAGATAAGAATCGCCGTCTTCG
* * * *
30529903 ATTTGGTCTACTACTGCTTAGAGAGATAAGATTTGTAATT
249 ATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATT
* *
30529943 TTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCTCTTACACTACTGA
1 TTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTCAC---C-T--A----TTCCACTGCTGA
* * * * *
30530008 CCAGGCAGATAGGATTCACAATCTTGAACCTATTCCACTACTGGCAAGGGAGATAGGATTGACCT
56 CCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAGGATTCACCT
* * *
30530073 ATTTCACTACTGACTAGGCATATAT-GACTTACAATCTTCAACCTATTCCACTACTGACCAGGGA
121 ATTCCACTACTGACTAGGAAGAT-TGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGA
* * *
30530137 GATAAGGCTAGTGGCTTAAATCTTCTTCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTCGA
185 GATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGAAAGATAAGAATCGCCGTCTTCGA
* *
30530202 TCTGCTCCACTACTGCTTTGGGAGATAAGATCTGTAATT
250 TCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATT
* * * *
30530241 TTCAACCTACTCCATTGCTGCTCTGGGAGATAAGATTTACAATCTTCAACCTATTCCATTGCTGA
1 TTCAACCTACTCCACTGCTGCTCAGGGAGAT-AG------GA--TTC-ACCTATTCCACTGCTGA
*
30530306 CCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGATAGGATTCACCT
56 CCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAGGATTCACCT
* * * **
30530371 ATTCCACTGCTGACCAGGAAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAG
121 ATTCCACTACTGACTAGGAAGATTGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAG
30530436 ATAAG
186 ATAAG
30530441 ACTCACAATC
Statistics
Matches: 426, Mismatches: 48, Indels: 48
0.82 0.09 0.09
Matches are distributed among these distances:
297 1 0.00
298 349 0.82
299 5 0.01
301 2 0.00
302 2 0.00
304 2 0.00
305 2 0.00
307 5 0.01
308 58 0.14
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.28
Consensus pattern (288 bp):
TTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTCACCTATTCCACTGCTGACCAGGGAGAT
AGGATTCACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAGGATTCACCTATTCCACTAC
TGACTAGGAAGATTGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAG
TGGCTTAAATCTGCTTCCCTACTACCTTGGAAAGATAAGAATCGCCGTCTTCGATCTGCTCCACT
ACTGCTTAGAGAGATAAGATCTGTAATT
Found at i:30530233 original size:684 final size:684
Alignment explanation
Indices: 30529414--30530764 Score: 2202
Period size: 684 Copynumber: 2.0 Consensus size: 684
30529404 AAGGAGATAG
*
30529414 GACTTACAATCTTCAACCTGTTCCACTACTAACCAGGGAGATAAGGCTAGTGGCTTAAATTTGCT
1 GACTTACAATCTTCAACCTATTCCACTACTAACCAGGGAGATAAGGCTAGTGGCTTAAATTTGCT
30529479 TCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTTAGGAGAT
66 TCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTTAGGAGAT
*
30529544 AAGATCTGTAATTTTCAACCTACTCCACAGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCT
131 AAGATCTGTAATTTTCAACCTACTCCACAGCTGCTCAGGGAGATAAGATTCACAATCTTCAACCT
* * * *
30529609 ATTCCATTGCTGACCAGGGGGATAGGATTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAG
196 ATTCCATTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAG
*
30529674 ATAGGATTCACCTATTCCACTGCTAACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACT
261 ATAGGATTCACCTATTCCACTGCTAACCAGGAAGATAGGACTTACAATCTTCAACCTATTCCACT
* * * * * *
30529739 GTTGATCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTCCTGACTAGGGAGGTTGGACT
326 GTTGACCAGGGAGATAAGACTCACAATCTTCAACCAATTCCACTCCTGACCAGGGAGATAGGACT
* * *
30529804 TACAATCTTCAACCTGTTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTACATCTGCTTCCC
391 TACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTCCTTCCC
* * * * *
30529869 TACTACCTTGGAAAGATAAGAATCGCCGTCTTCGATTTGGTCTACTACTGCTTAGAGAGATAAGA
456 TACTACCTCGGAAAGATAAGAATCGCCGTCTTCGATCTGCTCCACTACTACTTAGAGAGATAAGA
* * * * * *
30529934 TTTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCTCTTA
521 TCTGTAATTGTCAACCTACTCCACTACTGCTCAGGGAGAGAAGATTCACAATCTTCAACCTATTA
* ** *
30529999 CACTACTGACC-AGGCAGATAGGATTCACAATCTTGAACCTATTCCACTACTGGCAAGGGAGATA
586 CACTACTGACCAAGG-AGATAGGATTCACAATCTTCAACCTATTCCACTACTAACAAGGGAGAGA
*
30530063 GGATTGACCTATTTCACTACTGACTAGGCATATAT
650 GGATTCACCTATTTCACTACTGACTAGGCATATAT
*
30530098 GACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTT-C
1 GACTTACAATCTTCAACCTATTCCACTACTAACCAGGGAGATAAGGCTAGTGGCTTAAAT-TTGC
* *
30530162 TTCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTTGGGAGA
65 TTCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTTAGGAGA
** * *
30530227 TAAGATCTGTAATTTTCAACCTACTCCATTGCTGCTCTGGGAGATAAGATTTACAATCTTCAACC
130 TAAGATCTGTAATTTTCAACCTACTCCACAGCTGCTCAGGGAGATAAGATTCACAATCTTCAACC
30530292 TATTCCATTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACCAAGGA
195 TATTCCATTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACCAAGGA
*
30530357 GATAGGATTCACCTATTCCACTGCTGACCAGGAAGATAGGACTTACAATCTTCAACCTATTCCAC
260 GATAGGATTCACCTATTCCACTGCTAACCAGGAAGATAGGACTTACAATCTTCAACCTATTCCAC
* * **
30530422 TGTTGACCAGGGAGATAAGACTCACAATCTTTAACCAATTCCACTGCTTTCCAGGGAGATAGGAC
325 TGTTGACCAGGGAGATAAGACTCACAATCTTCAACCAATTCCACTCCTGACCAGGGAGATAGGAC
30530487 TTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTCCTTCC
390 TTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTCCTTCC
* * * * *
30530552 CTACTACCTCGGGAAGATAAGATTCGCTGTCTTCGATCTGCTCCACTGCTACTTAGGGAGATAAG
455 CTACTACCTCGGAAAGATAAGAATCGCCGTCTTCGATCTGCTCCACTACTACTTAGAGAGATAAG
*
30530617 ATCTGTAATTGTCAACCTACTCCACTACTGCTCAGGGAGAGAAGATTCACAATCTTTAACCTATT
520 ATCTGTAATTGTCAACCTACTCCACTACTGCTCAGGGAGAGAAGATTCACAATCTTCAACCTATT
* *
30530682 ACACTACTGACCAAGGAGATAGGATTCATAATCTTCAACCTATTCCACTACTAACAGGGGAGAGA
585 ACACTACTGACCAAGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTAACAAGGGAGAGA
30530747 GGATTCACCTATTTCACT
650 GGATTCACCTATTTCACT
30530765 GTTGACCAGG
Statistics
Matches: 613, Mismatches: 52, Indels: 4
0.92 0.08 0.01
Matches are distributed among these distances:
684 608 0.99
685 5 0.01
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.28
Consensus pattern (684 bp):
GACTTACAATCTTCAACCTATTCCACTACTAACCAGGGAGATAAGGCTAGTGGCTTAAATTTGCT
TCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTTAGGAGAT
AAGATCTGTAATTTTCAACCTACTCCACAGCTGCTCAGGGAGATAAGATTCACAATCTTCAACCT
ATTCCATTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAG
ATAGGATTCACCTATTCCACTGCTAACCAGGAAGATAGGACTTACAATCTTCAACCTATTCCACT
GTTGACCAGGGAGATAAGACTCACAATCTTCAACCAATTCCACTCCTGACCAGGGAGATAGGACT
TACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTCCTTCCC
TACTACCTCGGAAAGATAAGAATCGCCGTCTTCGATCTGCTCCACTACTACTTAGAGAGATAAGA
TCTGTAATTGTCAACCTACTCCACTACTGCTCAGGGAGAGAAGATTCACAATCTTCAACCTATTA
CACTACTGACCAAGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTAACAAGGGAGAGAG
GATTCACCTATTTCACTACTGACTAGGCATATAT
Found at i:30530274 original size:386 final size:383
Alignment explanation
Indices: 30529194--30530664 Score: 1116
Period size: 386 Copynumber: 3.8 Consensus size: 383
30529184 AGCCTATTCT
* *
30529194 ACTGCTGAC-CAGGGAGATAGGATTCACAATCTTCGACCTATTCCACTGCTGACCAGGGAGATAG
1 ACTGCTG-CTCAGGGAGATAGGATTCACAATCTTCAACCT-TTCCACTGCTGACCAGGAAGATAG
* * * *
30529258 GATT-C-A-C-T-----TATTCCACTGATGACCAGGGAGATAGGATTCACCTATTCCACTGCTAA
64 GATTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACCTATTTCACTACTGA
* ** **
30529314 CCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGAT-AGGACTCACA
129 CTAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGG-CT-AGT
** * * * * ** * * * * * * *
30529378 ACCTTCAA-CCTATTCCACTGCTGGCTAAGG-AGATAGGACTT-ACAATCTTCAACCTGTTCCAC
192 GGCTTAAATCTTCTTCC-CTACTACCTAGGGAAGATAAGA-TTCGCAGTCTTCGATCTGCTCCAC
* * * *** * ** * *
30529440 TACTAAC-CAGGGAGATAAG-GCTAGT-GGCTTAAATTTGCTTCC-CTACTAC-CTTGGGAAGAT
255 TACT-GCTTAGGGAGATAAGATCT-GTAATTTTCAACCTAC-TCCACTACTGCTC-TGGG-AGAT
* *
30529500 AAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTTAGGAGATAAGATCTGTAATTTTCAACCT
315 AAGATTCGCCGTCTTCGATCTGCTCCACTACTGC-TTAGGAGATAAGATTTGTAATTTTCAACCT
30529565 ACTCC
379 ACTCC
* * **
30529570 ACAGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCTATTCCATTGCTGACCAGGGGGATAGG
1 ACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCT-TTCCACTGCTGACCAGGAAGATAGG
* * *
30529635 ATTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACCTATTCCACTGCTAA
65 A-TTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACCTATTTCACTACTGA
* ** * **
30529700 CCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGATCAGGGAGAT-AGGACTCACA
129 CTAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGG-CT-AGT
** * * * * * ** * * * * *
30529764 ATCTTCAA-CCTATTCCACTCCTGA-CTAGGG-AGGTTGGACTT-ACAATCTTCAACCTGTTCCA
192 GGCTTAAATCTTCTTCC-CTACT-ACCTAGGGAAGATAAGA-TTCGCAGTCTTCGATCTGCTCCA
* * *** * * * * *
30529825 CTACTGAC-CAGGGAGATAAG-GCTAGTGGCTTAC-ATCTGCTTCC-CTACTAC-CTTGGAAAGA
254 CTACTG-CTTAGGGAGATAAGATCT-GTAATTTTCAACCTAC-TCCACTACTGCTC-TGG-GAGA
* * * *
30529885 TAAGAATCGCCGTCTTCGATTTGGTCTACTACTGCTTAGAGAGATAAGATTTGTAATTTTCAACC
314 TAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAG-GAGATAAGATTTGTAATTTTCAACC
30529950 TACTCC
378 TACTCC
* * *
30529956 ACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCTCTTACACTACTGACCAGGCAGATAGG
1 ACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCT-TTCCACTGCTGACCAGGAAGATAGG
* * * * *
30530021 ATTCACAATCTTGAACCTATTCCACTACTGGCAAGGGAGATAGGATTGACCTATTTCACTACTGA
65 ATT-ACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACCTATTTCACTACTGA
* * *
30530086 CTAGGCATATATGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGG
129 CTAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGG
* *
30530151 CTTAAATCTTCTTCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACT
194 CTTAAATCTTCTTCCCTACTACCTAGGGAAGATAAGATTCGCAGTCTTCGATCTGCTCCACTACT
* * * **
30530216 GCTTTGGGAGATAAGATCTGTAATTTTCAACCTACTCCATTGCTGCTCTGGGAGATAAGATTTAC
259 GCTTAGGGAGATAAGATCTGTAATTTTCAACCTACTCCACTACTGCTCTGGGAGATAAGATTCGC
** * * ** * * * * *** * *
30530281 AATCTTCAACCTATTCCATTGCTGAC-CAGGGAGATAGGATTCACAATCTTCAACCTATTCC
324 CGTCTTCGATCTGCTCCACTACTG-CTTA-GGAGATAAGATTTGTAATTTTCAACCTACTCC
* *
30530342 ACTACTGAC-CAAGGAGATAGGATTCAC---C-T--A---TTCCACTGCTGACCAGGAAGATAGG
1 ACTGCTG-CTCAGGGAGATAGGATTCACAATCTTCAACCTTTCCACTGCTGACCAGGAAGATAGG
* * * * *
30530397 ACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAAGACTCACAATCTTTAACCAATT
65 A-TTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCAC-CTATTT---C-A--
*
30530462 CCACTG-CTTTCCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGAT
122 CTACTGAC--T--AGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGAT
* * *
30530526 AAGGCTAGTGGCTTAAATCTCCTTCCCTACTACCTCGGGAAGATAAGATTCGCTGTCTTCGATCT
183 AAGGCTAGTGGCTTAAATCTTCTTCCCTACTACCTAGGGAAGATAAGATTCGCAGTCTTCGATCT
* * * *
30530591 GCTCCACTGCTACTTAGGGAGATAAGATCTGTAATTGTCAACCTACTCCACTACTGCTCAGGGAG
248 GCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTACTCCACTACTGCTCTGGGAG
*
30530656 AGAAGATTC
313 ATAAGATTC
30530665 ACAATCTTTA
Statistics
Matches: 924, Mismatches: 129, Indels: 74
0.82 0.11 0.07
Matches are distributed among these distances:
375 1 0.00
376 121 0.13
377 8 0.01
378 1 0.00
379 1 0.00
380 3 0.00
381 2 0.00
382 2 0.00
383 6 0.01
384 2 0.00
385 24 0.03
386 731 0.79
387 21 0.02
388 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (383 bp):
ACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCTTTCCACTGCTGACCAGGAAGATAGGA
TTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACCTATTTCACTACTGACT
AGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCT
TAAATCTTCTTCCCTACTACCTAGGGAAGATAAGATTCGCAGTCTTCGATCTGCTCCACTACTGC
TTAGGGAGATAAGATCTGTAATTTTCAACCTACTCCACTACTGCTCTGGGAGATAAGATTCGCCG
TCTTCGATCTGCTCCACTACTGCTTAGGAGATAAGATTTGTAATTTTCAACCTACTCC
Found at i:30530343 original size:132 final size:131
Alignment explanation
Indices: 30530207--30534133 Score: 499
Period size: 132 Copynumber: 30.5 Consensus size: 131
30530197 TTCGATCTGC
* * * *
30530207 TCCACTACTGCTTTGGGAGATAAGATCTGTAATTTTCAACCTACTCCATTGCTG-CTCTGGGAGA
1 TCCACTACTGCTTAGGGAGATAAGA-CTGTAATTTTCAACCTACTCCACTACTGAC-CAGGGAGA
* * *
30530271 TAAGATTTACAATCTTCAACCTATTCCATTGCTGACCAGGGAGATAGGATTCACAATCTTCAACC
64 TAAGATTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGATTCACAATCTTCAACC
30530336 TAT
129 TAT
* * * * *
30530339 TCCACTACTGAC-CAAGGAGAT-AG---G--A--TTC-ACCTATTCCACTGCTGACCAGGAAGAT
1 TCCACTACTG-CTTAGGGAGATAAGACTGTAATTTTCAACCTACTCCACTACTGACCAGGGAGAT
* * ** * * *
30530394 AGGACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAAGACTCACAATCTTTAACCA
65 AAGATTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGATTCACAATCTTCAACCT
30530459 AT
130 AT
* * * *
30530461 TCCACTGCT--TTCCAGGGAGATAGGACT-TACAATCTTCAACCTATTCCACTACTGACCAGGGA
1 TCCACTACTGCTT--AGGGAGATAAGACTGT--AATTTTCAACCTACTCCACTACTGACCAGGGA
** **** * * * * * **
30530523 GATAAG-GCTAGTGGCTTAAATCTCCTTCC-CTACT-ACCTCGGGAAGATAAGATTCGCTGTCTT
62 GATAAGATTTACAATCTTCAACCT-ATTCCACTACTGACC-AGGG-AGATAAGATTCACAATCTT
* * **
30530585 CGATCTGC
124 CAACCTAT
* * *
30530593 TCCACTGCTACTTAGGGAGATAAGATCTGTAATTGTCAACCTACTCCACTACTG-CTCAGGGAGA
1 TCCACTACTGCTTAGGGAGATAAGA-CTGTAATTTTCAACCTACTCCACTACTGAC-CAGGGAGA
* * * * * * *
30530657 GAAGATTCACAATCTTTAACCTATTACACTACTGACCAAGGAGATAGGATTCATAATCTTCAACC
64 TAAGATTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGATTCACAATCTTCAACC
30530722 TAT
129 TAT
* * * * * **
30530725 TCCACTACTAAC--AGGG-GA-GAGA--G-GA--TTC-ACCTATTTCACTGTTGACCAGGGAGAT
1 TCCACTACT-GCTTAGGGAGATAAGACTGTAATTTTCAACCTACTCCACTACTGACCAGGGAGAT
** **** * ** * * * * *
30530780 AAG-GCTAGTGGCTTAAATTTGCTTCC-TTACT-ACCTTGGGAAGATAAGATTCGCTATCTTCGA
65 AAGATTTACAATCTTCAACCT-ATTCCACTACTGACC-AGGG-AGATAAGATTCACAATCTTC-A
* **
30530842 TCC-GC
126 ACCTAT
* * * * * **
30530847 TGCACTGCTACTTAGGGAGATAAGATCTGTAATTTTCAACCTACTTCATTGTTG-CTCAGGGAGA
1 TCCACTACTGCTTAGGGAGATAAGA-CTGTAATTTTCAACCTACTCCACTACTGAC-CAGGGAGA
* * * * *
30530911 T-AGAATTCACAATCTTCAGCCTATTCTACTGCTGACCAGGGAGATATGATTCACAATCTTCAAC
64 TAAG-ATTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGATTCACAATCTTCAAC
30530975 CTAT
128 CTAT
* * * * * *
30530979 TCGACTGCTGAC-TAGGGAGAT-AG---G--A--TTC-ATCTATTCCACTGCTAACCAGGGAGAT
1 TCCACTACTG-CTTAGGGAGATAAGACTGTAATTTTCAACCTACTCCACTACTGACCAGGGAGAT
* * * * * *
30531034 AGGACTTACAATCTTAAACCTATTCCACTATTGACCAGGGAGATAGGACTCACAATCTTCAACCT
65 AAGATTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGATTCACAATCTTCAACCT
30531099 AT
130 AT
** * * * ** *
30531101 TCCACTGTTGAC-CAGGGAGATAGGACT-TACAATCTTCAACCTGTTCCACTTCTGACCAGGGAG
1 TCCACTACTG-CTTAGGGAGATAAGACTGT--AATTTTCAACCTACTCCACTACTGACCAGGGAG
** **** * ** ** * * * ** *
30531164 ATAAG-GCTAGTGGCTTAAATTTGCTCCCCTACT-ACCTTGGGAAGATAAGAATCACCGTCTTCG
63 ATAAGATTTACAATCTTCAACCTATTCCACTACTGACC-AGGG-AGATAAGATTCACAATCTTCA
** **
30531227 ATTTGG
126 ACCTAT
* * * * * *
30531233 TCTACTACTTCTTAGAGAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTG-CTCAGGGACA
1 TCCACTACTGCTTAGGGAGATAAGA-CTGTAATTTTCAACCTACTCCACTACTGAC-CAGGGAGA
* * ** * * * * *
30531297 TAGGATTCACAATCCACAACCTCTTACACTGCTGACCAGGGAGATAGGATTCACAATATTCAACC
64 TAAGATTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGATTCACAATCTTCAACC
30531362 TAT
129 TAT
* * *** * * * * *
30531365 TTCACTGCTGAAAAGGGAGAT-AG---G--A--TT-GACCTATTTCACTGCTGACTAGGGAGATA
1 TCCACTACTGCTTAGGGAGATAAGACTGTAATTTTCAACCTACTCCACTACTGACCAGGGAGATA
* * ** **** * *
30531421 TGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCT-AGTGGCTTACATCTT
66 AGATTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGATTCACAATCTT-CAACCT
*
30531485 CT
130 AT
* * * * * *** * * * * **
30531487 TCC-CTACTACCTTCGGAAGATATGATTCGCCGTCTTCAATCTGCTCAACTACTG-CTTTGGGAG
1 TCCACTACT-GCTTAGGGAGATAAGACT-GTAATTTTCAACCTACTCCACTACTGAC-CAGGGAG
* ** * * * * * *
30531550 ATAAGATCTGTAATTTTCAACCTACTCCATTGCTG-CTCTGGGAGATAAGATTTACAATCTTCAA
63 ATAAGATTTACAATCTTCAACCTATTCCACTACTGAC-CAGGGAGATAAGATTCACAATCTTCAA
30531614 CCTAT
127 CCTAT
* * * * * ** * * * *
30531619 TCCATTGCTGAC-CAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAAGGAGA
1 TCCACTACTG-CTTAGGGAGATAAGACT-GTAATTTTCAACCTACTCCACTACTGACCAGGGAGA
* * * *
30531683 T-AG------GA--TTC-ACCTATTCCACTCCTGACCAGGGAGATAGGACTT-AAAATCTTCAAC
64 TAAGATTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGA-TTCACAATCTTCAAC
30531737 CTAT
128 CTAT
** * * ** * * * *
30531741 TCCACTGTTGAC-CAGGGAGATAGGACTCACAATCTTT-AACCAATTCCACTGCTTACCAGGGAG
1 TCCACTACTG-CTTAGGGAGATAAGACT-GTAAT-TTTCAACCTACTCCACTACTGACCAGGGAG
* * * * ** **** * *
30531804 ATAGGACTTACAATCTTCAACCTGTTGCACTACTGACCAGGGAGATAAGGCT-AGTGGCTTAAAT
63 ATAAGATTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGATTCACAATCTTCAAC
*
30531868 CTGCT
128 CT-AT
* * * ** ** * * * *
30531873 TCC-CTACTACCTT-GGGAAGATAAGAATCACCGT-A-TTT-GATTTGGTCTACTACAG-CTTAA
1 TCCACTACT-GCTTAGGG-AGATAAG----ACTGTAATTTTCAACCTACTCCACTACTGAC-CAG
* ** * ** * * *
30531932 AGAGATAAGATTTGTAATTTTCAACCTACACCACTGCTG-CTTAGGGAGATAGGATTCACAATCT
59 GGAGATAAGATTTACAATCTTCAACCTATTCCACTACTGAC-CAGGGAGATAAGATTCACAATCT
* *
30531996 GCAACCTCT
123 TCAACCTAT
* * * * * ** * *
30532005 TACACTGCTGAC-CAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGA-CA---AGA
1 TCCACTACTG-CTTAGGGAGATAAGACT-GTAATTTTCAACCTACTCCACTACTGACCAGGGAGA
* ** * * * *
30532065 -GAGA--TAGGA--TGC-ACCTAGTT-CACTGCTGACTAGGGAGATATGACTT-ACAATCTTCAA
64 TAAGATTTACAATCTTCAACCTA-TTCCACTACTGACCAGGGAGATAAGA-TTCACAATCTTCAA
30532122 CCTAT
127 CCTAT
* * *** * * *
30532127 TCCACTACTGAC-CAGGGAGATAAGGCTAGT-GGCTT-AAGTCTTCTTCC-CTACT-ACCTTGGG
1 TCCACTACTG-CTTAGGGAGATAAGACT-GTAATTTTCAA-CCTAC-TCCACTACTGACC-AGGG
** ** * * ** ** ** *
30532187 AAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTG-CTTTGGGAGATAAGA-TCTGTAATTT
61 -AGATAAGATTTACAATCTTCAACCTATTCCACTACTGAC-CAGGGAGATAAGATTC-ACAATCT
*
30532250 TCAACCTAC
123 TCAACCTAT
* * * * * ** * * * *
30532259 TGCACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCTATTCCATTGCTGACCAGGGAGAT
1 TCCACTACTGCTTAGGGAGATAAGACT-GTAATTTTCAACCTACTCCACTACTGACCAGGGAGAT
* * * ** **
30532324 AGGACTCACAATCTTCAACCTATTCCACTGTTGACCAGGGAG---AG----AGGA--TTC-ACCT
65 AAGATTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGATTCACAATCTTCAACCT
30532379 AT
130 AT
* * ** * * **
30532381 TCCACTGCTGAC-TAGGGAGATAGGACCTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGA
1 TCCACTACTG-CTTAGGGAGATAAGA-CTGTAATTTTCAACCTACTCCACTACTGACCAGGGAGA
* * * * * *
30532445 TACGACTCATAATCTTCAACCTATTCCACTGCTGACCAGGGAGATATGACTT-ACAATCTTCAAC
64 TAAGATTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGA-TTCACAATCTTCAAC
30532509 CTAT
128 CTAT
* * *** * * * *
30532513 TCCACTACTGAC-CAGGGAGATAAGGCTAGT-GGCTTAAATCTGCTTCC-CTACT-ACCTTGGGA
1 TCCACTACTG-CTTAGGGAGATAAGACT-GTAATTTTCAACCTAC-TCCACTACTGACC-AGGG-
* * ** * * ** * ** ** *
30532574 AGATAAGAATTGCCTTCTTCGATCTGCTCTA-TGACTG-CTTTGGGAGATAAGA-TCTGTAATTT
61 AGATAAGATTTACAATCTTCAACCTATTCCACT-ACTGAC-CAGGGAGATAAGATTC-ACAATCT
* *
30532636 TCAACTTAC
123 TCAACCTAT
* * * * ** * * * * * *
30532645 TCCACTACTGCTCACGGAGATAGGATTCACAATCTACAACCTATTACACTGCTGACCAGAGAGAT
1 TCCACTACTGCTTAGGGAGATAAGACT-GTAATTTTCAACCTACTCCACTACTGACCAGGGAGAT
* * * * *
30532710 AGGATTCACAATCTTCAACCTATTACACTACTGACAAAGGAGATAAGATTCAC---C-T--A--T
65 AAGATTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGATTCACAATCTTCAACCT
30532767 -T
130 AT
* * * * * * *
30532768 T-TACTGCTGAC-TAGGGAGATATGACT-TACAATCTTCAACCTATTCAACTACTGACCAGAGAG
1 TCCACTACTG-CTTAGGGAGATAAGACTGT--AATTTTCAACCTACTCCACTACTGACCAGGGAG
** **** * ** * * * * *
30532830 ATAAG-GCTAGTGGCTTAAATTTTCTTCC-CTACT-ACCTTGGGAAGATAAGATTCGCCATCTTT
63 ATAAGATTTACAATCTTCAA-CCTATTCCACTACTGACC-AGGG-AGATAAGATTCACAATCTTC
* * **
30532892 TATCTGC
125 AACCTAT
* * * * * * **
30532899 TCCACTACTACTTTGGGAAATAAGATTTATAATTTTCAACCTACTCCATTGTTG-CTCAGGGAGA
1 TCCACTACTGCTTAGGGAGATAAGA-CTGTAATTTTCAACCTACTCCACTACTGAC-CAGGGAGA
* * * * * *
30532963 TAGGATTCAGAATCTTCAACCTATTCCACTGCTGACCAAGGAGAT-AG------GA--TTC-ACC
64 TAAGATTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGATTCACAATCTTCAACC
30533018 TAT
129 TAT
* * * * * *
30533021 CCCACTGCTGAC-CAGGGAGATAGGACT-TACAATCTTT-AACCTATTCCTCTACTGACCAGGGA
1 TCCACTACTG-CTTAGGGAGATAAGACTGT--AAT-TTTCAACCTACTCCACTACTGACCAGGGA
** **** * * * * * **
30533083 GATAAG-GCTAGTGGCTTAAATCTACTTCC-CTACT-ACCTTGGGAAGATAAGAATCGCCGTCTT
62 GATAAGATTTACAATCTTCAACCTA-TTCCACTACTGACC-AGGG-AGATAAGATTCACAATCTT
* * **
30533145 CGATCTGC
124 CAACCTAT
* * * *
30533153 TCTACTATTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTATTCCACTACTGACTAGGGAGAT
1 TCCACTACTGCTTAGGGAGATAAGA-CTGTAATTTTCAACCTACTCCACTACTGACCAGGGAGAT
* * * * * * **** * *
30533218 AGGACTTACAATCTTCAACCTATTCCACTACTAACCAGGAAGACAAGGCTT--GTGGCTTAAATC
65 AAGATTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAA-GATTCACAATCTTCAACC
*
30533281 TGCT
129 T-AT
* * * * *** * * * * * *
30533285 TCC-CTACTACCTAGGAAAGATAAGATTTGCCGTCTTCGATCTACTCTACTATTG-CTTAGGGAG
1 TCCACTACTGCTTAGG-GAGATAAGA-CTGTAATTTTCAACCTACTCCACTACTGAC-CAGGGAG
** ** * * * * *
30533348 ATAACTTTTGTAATTTTCAACCTA-TCCAGTGCT-ACTCAGGGAGATAGGATTCACAATTTTCAA
63 ATAAGATTTACAATCTTCAACCTATTCCACTACTGAC-CAGGGAGATAAGATTCACAATCTTCAA
30533411 CCTAT
127 CCTAT
* * * * ** * * * * *
30533416 TTCACTATTGAC-GAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTGGCCATGGAGA
1 TCCACTACTG-CTTAGGGAGATAAGACT-GTAATTTTCAACCTACTCCACTACTGACCAGGGAGA
* * * * ** **** * *
30533480 TAAGACTTATAATCTTCAACCTATTCCACTACTGACTAGTGAGATAAGGCT-AGTGGCTTAAATC
64 TAAGATTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGATTCACAATCTTCAACC
30533544 TACT
129 TA-T
* *** * * * * * *
30533548 TCTCTACTAC--CTT-GGGAAGATAAGAATCGCCGTCTTCGATCTGCTCTACTACTG-CTTAGGG
1 TC-C-ACTACTGCTTAGGG-AGATAAGACT-GTAATTTTCAACCTACTCCACTACTGAC-CAGGG
* * ** * ** * *
30533609 AGAAAAGATCTGTAATTTTCAACCT-TCTCCACTGTTG-CTAAGGGAGATAGGATTCACAATCTT
61 AGATAAGATTTACAATCTTCAACCTAT-TCCACTACTGAC-CAGGGAGATAAGATTCACAATCTT
30533672 CAACCTAT
124 CAACCTAT
* * * * * *
30533680 TCCACTGCTGAC-TAGGGAGATAGGACT-TACAATCTTCAACCTATTTCACTACCGACCAGGGAG
1 TCCACTACTG-CTTAGGGAGATAAGACTGT--AATTTTCAACCTACTCCACTACTGACCAGGGAG
** **** * * * * * ** *
30533743 ATAAG-GCTAGTGGCTTAAATCTGCTTCC-CTACT-ACCTCGGGAAGATAAGATTCGCCGTCTTT
63 ATAAGATTTACAATCTTCAACCT-ATTCCACTACTGACC-AGGG-AGATAAGATTCACAATCTTC
* ** **
30533805 GATTTGC
125 AACCTAT
* * * *
30533812 TGCACTGCTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTACTTCATTACTG-CTCAGGGAGA
1 TCCACTACTGCTTAGGGAGATAAGA-CTGTAATTTTCAACCTACTCCACTACTGAC-CAGGGAGA
* * * * *
30533876 T-AGAATTCACAATCTTCAGCCTATTCTACTGCTGACCAGGGAGATAGGATTCACAATCTTCAAC
64 TAAG-ATTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGATTCACAATCTTCAAC
30533940 CTAT
128 CTAT
* * * * *
30533944 TCCACTGCTGAC-CAGGGAGAT-AG---G--A--TTC-ATCTATTCCACTACTAACCAGGGAGAT
1 TCCACTACTG-CTTAGGGAGATAAGACTGTAATTTTCAACCTACTCCACTACTGACCAGGGAGAT
* * ** * *
30533999 AGGACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATCTTCAACCT
65 AAGATTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGATTCACAATCTTCAACCT
30534064 AT
130 AT
* * * * * **
30534066 TCCGCTGCTGAC-CAGGGAGATAGGACT-TACAATCTTCAACCTGTTCCACTACTGACCAGGGAG
1 TCCACTACTG-CTTAGGGAGATAAGACTGT--AATTTTCAACCTACTCCACTACTGACCAGGGAG
30534129 ATAAG
63 ATAAG
30534134 GCTAGTGGCT
Statistics
Matches: 2642, Mismatches: 872, Indels: 562
0.65 0.21 0.14
Matches are distributed among these distances:
120 12 0.00
121 63 0.02
122 784 0.30
123 61 0.02
124 3 0.00
125 15 0.01
126 6 0.00
127 11 0.00
128 7 0.00
129 12 0.00
130 25 0.01
131 254 0.10
132 1178 0.45
133 171 0.06
134 38 0.01
136 2 0.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (131 bp):
TCCACTACTGCTTAGGGAGATAAGACTGTAATTTTCAACCTACTCCACTACTGACCAGGGAGATA
AGATTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGATTCACAATCTTCAACCTA
T
Found at i:30530376 original size:34 final size:34
Alignment explanation
Indices: 30530333--30530397 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
30530323 ACAATCTTCA
30530333 ACCTATTCCACTACTGACCAAGG-AGATAGGATTC
1 ACCTATTCCACTACTGACC-AGGAAGATAGGATTC
*
30530367 ACCTATTCCACTGCTGACCAGGAAGATAGGA
1 ACCTATTCCACTACTGACCAGGAAGATAGGA
30530398 CTTACAATCT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 3 0.10
34 26 0.90
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (34 bp):
ACCTATTCCACTACTGACCAGGAAGATAGGATTC
Found at i:30530525 original size:298 final size:298
Alignment explanation
Indices: 30529771--30530528 Score: 781
Period size: 298 Copynumber: 2.5 Consensus size: 298
30529761 ACAATCTTCA
* * * * * *
30529771 ACCTATTCCACTCCTGACTAGGGAGGTTGGACTTACAATCTTCAACCTGTTCCACTACTGACCAG
1 ACCTATTCCACTACTGACCAGGAAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAG
* *** * *** * * * * **
30529836 GGAGATAAGGCTAGTGGCTTACATCTGCTTCCCTACTACCTTGGAAAGATAAGAATCGCCGTCTT
66 GGAGATAAGACTACAAGCTTAAATCCAATTCCCTACTACCTAGGGAAGATAAGATTCACAATCTT
* ** ** * * * *
30529901 CGATTTGGTCTACTACTGCTTAGAGAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTGCTC
131 CAACCTACTCCACTACTGCTCAGGGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGCTC
* *
30529966 AGGGAGATAGGATTCACAATCTTCAACCTCTTACACTACTGACCAGGCAGATAGGATTCACAATC
196 AGGGAGATAAGATTCACAATCTTCAACCTATTACACTACTGACCAGGCAGATAGGATTCACAATC
* * *
30530031 TTGAACCTATTCCACTACTGGCAAGGGAGATAGGATTG
261 TTCAACCTATTCCACTACTGCCAAGGGAGATAGGATTC
* * * * *
30530069 ACCTATTTCACTACTGACTAGGCATATATGACTTACAATCTTCAACCTATTCCACTACTGACCAG
1 ACCTATTCCACTACTGACCAGGAAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAG
* *** *** * * **
30530134 GGAGATAAGGCTAGTGGCTTAAATCTTCTTCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTT
66 GGAGATAAGACTACAAGCTTAAATCCAATTCCCTACTACCTAGGGAAGATAAGATTCACAATCTT
* * * ** *
30530199 CGATCTGCTCCACTACTGCTTTGGGAGATAAGATCTGTAATTTTCAACCTACTCCATTGCTGCTC
131 CAACCTACTCCACTACTGCTCAGGGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGCTC
* * * * * *
30530264 TGGGAGATAAGATTTACAATCTTCAACCTATTCCATTGCTGACCAGGGAGATAGGATTCACAATC
196 AGGGAGATAAGATTCACAATCTTCAACCTATTACACTACTGACCAGGCAGATAGGATTCACAATC
30530329 TTCAACCTATTCCACTACTGACCAA-GGAGATAGGATTC
261 TTCAACCTATTCCACTACTG-CCAAGGGAGATAGGATTC
* **
30530367 ACCTATTCCACTGCTGACCAGGAAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGACCAG
1 ACCTATTCCACTACTGACCAGGAAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAG
* * * * *
30530432 GGAGATAAGACTCACAATCTTTAA-CCAATTCCACTGCTTTCC-AGGG-AGATAGGACTT-ACAA
66 GGAGATAAGACT-ACAAGCTTAAATCCAATTCC-CTAC-TACCTAGGGAAGATAAGA-TTCACAA
*
30530493 TCTTCAACCTATTCCACTACTGAC-CAGGGAGATAAG
127 TCTTCAACCTACTCCACTACTG-CTCAGGGAGATAAG
30530529 GCTAGTGGCT
Statistics
Matches: 394, Mismatches: 60, Indels: 12
0.85 0.13 0.03
Matches are distributed among these distances:
298 373 0.95
299 18 0.05
300 3 0.01
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.28
Consensus pattern (298 bp):
ACCTATTCCACTACTGACCAGGAAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAG
GGAGATAAGACTACAAGCTTAAATCCAATTCCCTACTACCTAGGGAAGATAAGATTCACAATCTT
CAACCTACTCCACTACTGCTCAGGGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGCTC
AGGGAGATAAGATTCACAATCTTCAACCTATTACACTACTGACCAGGCAGATAGGATTCACAATC
TTCAACCTATTCCACTACTGCCAAGGGAGATAGGATTC
Found at i:30530572 original size:640 final size:640
Alignment explanation
Indices: 30529926--30531363 Score: 1727
Period size: 640 Copynumber: 2.2 Consensus size: 640
30529916 CTGCTTAGAG
* * * *
30529926 AGATAAGATTTG-TAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGAT-TCACAATCT-
1 AGATAAGATTCGCT-ATCTTCAACCTACTCCACTGCTACTCAGGGAGATAAGATCT-ACAAT-TG
* * *
30529988 TCAACCT-CTTACACTACTGAC-CAGGCAGATAGGATTCACAATCTTGAACCTATTCCACTACTG
63 TCAACCTAC-TACACTACTG-CTCAGGCAGAGAAGATTCACAATCTTGAACCTATTACACTACTG
* * * * * ** **
30530051 -GCAAGGGAGATAGGATTGACCT-AT-TTC-A-CTACT-GACTAGGC-ATATATGACTTACAATC
126 ACCAA-GGAGATAGGATT--CATAATCTTCAACCTACTCCACTA--CTA-ACAGGACAGACAAGA
30530109 TTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTT-CTTCCCTACTAC
185 TTC-ACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAAT-TTGCTTCCCTACTAC
* * * *
30530173 CTTGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTTGGGAGATAAGATCTGTA
248 CTTGGGAAGATAAGATTCGCCATCTTCGATCCGCTCCACTACTACTTAGGGAGATAAGATCTGTA
* * *
30530238 ATTTTCAACCTACTCCATTGCTGCTCTGGGAGATA-AGATTTACAATCTTCAACCTATTCCATTG
313 ATTTTCAACCTACTCCATTGCTGCTCAGGGAGATAGA-ATTCACAATCTTCAACCTATTCCACTG
30530302 CTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGATAGGATTC
377 CTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGATAGGATTC
* * *
30530367 ACCTATTCCACTGCTGACCAGGAAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGACCAG
442 ACCTATTCCACTGCTAACCAGGAAGATAGGACTTACAATCTTAAACCTATTCCACTATTGACCAG
* *
30530432 GGAGATAAGACTCACAATCTTTAACCAATTCCACTGCTT-TCCAGGGAGATAGGACTTACAATCT
507 GGAGATAAGACTCACAATCTTCAACCAATTCCACTG-TTGACCAGGGAGATAGGACTTACAATCT
*
30530496 TCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTCCTTCCCTACTACCT
571 TCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTCCTCCCCTACTACCT
30530561 CGGGA
636 CGGGA
* * * * * **
30530566 AGATAAGATTCGCTGTCTTCGATCTGCTCCACTGCTACTTAGGGAGATAAGATCTGTAATTGTCA
1 AGATAAGATTCGCTATCTTCAACCTACTCCACTGCTACTCAGGGAGATAAGATCTACAATTGTCA
* * *
30530631 ACCTACTCCACTACTGCTCAGGGAGAGAAGATTCACAATCTTTAACCTATTACACTACTGACCAA
66 ACCTACTACACTACTGCTCAGGCAGAGAAGATTCACAATCTTGAACCTATTACACTACTGACCAA
* ** * * *
30530696 GGAGATAGGATTCATAATCTTCAACCTATTCCACTACTAACAGGGGAGAGAGGATTCACCTATTT
131 GGAGATAGGATTCATAATCTTCAACCTACTCCACTACTAACAGGACAGACAAGATTCACCTATTC
** *
30530761 CACTGTTGACCAGGGAGATAAGGCTAGTGGCTTAAATTTGCTTCCTTACTACCTTGGGAAGATAA
196 CACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATTTGCTTCCCTACTACCTTGGGAAGATAA
* * *
30530826 GATTCGCTATCTTCGATCCGCTGCACTGCTACTTAGGGAGATAAGATCTGTAATTTTCAACCTAC
261 GATTCGCCATCTTCGATCCGCTCCACTACTACTTAGGGAGATAAGATCTGTAATTTTCAACCTAC
* * * *
30530891 TTCATTGTTGCTCAGGGAGATAGAATTCACAATCTTCAGCCTATTCTACTGCTGACCAGGGAGAT
326 TCCATTGCTGCTCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
* * * * * *
30530956 ATGATTCACAATCTTCAACCTATTCGACTGCTGACTAGGGAGATAGGATTCATCTATTCCACTGC
391 AGGATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGATAGGATTCACCTATTCCACTGC
* *
30531021 TAACCAGGGAGATAGGACTTACAATCTTAAACCTATTCCACTATTGACCAGGGAGATAGGACTCA
456 TAACCAGGAAGATAGGACTTACAATCTTAAACCTATTCCACTATTGACCAGGGAGATAAGACTCA
* *
30531086 CAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTTACAATCTTCAACCTGTTCCACT
521 CAATCTTCAACCAATTCCACTGTTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACT
* * * *
30531151 TCTGACCAGGGAGATAAGGCTAGTGGCTTAAATTTGCTCCCCTACTACCTTGGGA
586 ACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTCCTCCCCTACTACCTCGGGA
* * ** * ** ** * * * * * * ** *
30531206 AGATAAGAATCACCGTCTTCGATTTGGTCTACTACTTCTTAGAGAGATAAGATTTGTAATTTTCA
1 AGATAAGATTCGCTATCTTCAACCTACTCCACTGCTACTCAGGGAGATAAGATCTACAATTGTCA
* * * * * * *** * * *
30531271 ACCTACTCCACTGCTGCTCAGGGACATAGGATTCACAATCCACAACCTCTTACACTGCTGACCAG
66 ACCTACTACACTACTGCTCAGGCAGAGAAGATTCACAATCTTGAACCTATTACACTACTGACCAA
* *
30531336 GGAGATAGGATTCACAATATTCAACCTA
131 GGAGATAGGATTCATAATCTTCAACCTA
30531364 TTTCACTGCT
Statistics
Matches: 691, Mismatches: 92, Indels: 30
0.85 0.11 0.04
Matches are distributed among these distances:
638 2 0.00
639 8 0.01
640 655 0.95
641 17 0.02
642 5 0.01
643 4 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (640 bp):
AGATAAGATTCGCTATCTTCAACCTACTCCACTGCTACTCAGGGAGATAAGATCTACAATTGTCA
ACCTACTACACTACTGCTCAGGCAGAGAAGATTCACAATCTTGAACCTATTACACTACTGACCAA
GGAGATAGGATTCATAATCTTCAACCTACTCCACTACTAACAGGACAGACAAGATTCACCTATTC
CACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATTTGCTTCCCTACTACCTTGGGAAGATAA
GATTCGCCATCTTCGATCCGCTCCACTACTACTTAGGGAGATAAGATCTGTAATTTTCAACCTAC
TCCATTGCTGCTCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
AGGATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGATAGGATTCACCTATTCCACTGC
TAACCAGGAAGATAGGACTTACAATCTTAAACCTATTCCACTATTGACCAGGGAGATAAGACTCA
CAATCTTCAACCAATTCCACTGTTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACT
ACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTCCTCCCCTACTACCTCGGGA
Found at i:30530614 original size:254 final size:249
Alignment explanation
Indices: 30530367--30531034 Score: 621
Period size: 254 Copynumber: 2.6 Consensus size: 249
30530357 GATAGGATTC
* * * * * **
30530367 ACCTATTCCACTGCTGAC-CAGGAAGATAGGACTT-ACAATCTTCAACCTATTCCACTGTTGACC
1 ACCTACTCCACTACTG-CTCAGGAAGAGAAGA-TTCACAATCTTCAACCTATTACACTACTGACC
* * * ** *
30530430 AGGGAGATAAGACTCACAATCTTTAACCAATTCCACTGCTTTCCA-GGGAGATAGGACTTACAAT
64 AAGGAGATAAGACTCACAATCTTCAACCAATTCCACTAC-TAACAGGGGAGAGAGG-------A-
30530494 CTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTCCTTCCCTACTAC
120 -TTC-ACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTCCTTCCCTACTAC
* *
30530559 CTCGGGAAGATAAGATTCGCTGTCTTCGATCTGCTCCACTGCTACTTAGGGAGATAAGATCTGTA
183 CTCGGGAAGATAAGATTCGCTATCTTCGATCCGCTCCACTGCTACTTAGGGAGAT-AG---TG-A
30530624 ATTGTCA
243 ATTGTCA
* *
30530631 ACCTACTCCACTACTGCTCAGGGAGAGAAGATTCACAATCTTTAACCTATTACACTACTGACCAA
1 ACCTACTCCACTACTGCTCAGGAAGAGAAGATTCACAATCTTCAACCTATTACACTACTGACCAA
* * * * *
30530696 GGAGATAGGATTCATAATCTTCAACCTATTCCACTACTAACAGGGGAGAGAGGATTCACCTATTT
66 GGAGATAAGACTCACAATCTTCAACCAATTCCACTACTAACAGGGGAGAGAGGATTCACCTATTC
** * * * *
30530761 CACTGTTGACCAGGGAGATAAGGCTAGTGGCTTAAATTTGCTTCCTTACTACCTTGGGAAGATAA
131 CACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTCCTTCCCTACTACCTCGGGAAGATAA
* *
30530826 GATTCGCTATCTTCGATCCGCTGCACTGCTACTTAGGGAGATAAGATCTGTAATTTTCA
196 GATTCGCTATCTTCGATCCGCTCCACTGCTACTTAGGGAGAT-AG---TG-AATTGTCA
* * ** * *
30530885 ACCTACTTCATTGTTGCTCAGG--GAGATAGAATTCACAATCTTCAGCCTATT-CTACTGCTGAC
1 ACCTACTCCACTACTGCTCAGGAAGAGA-AG-ATTCACAATCTTCAACCTATTAC-ACTACTGAC
* * * * * * * * *
30530947 CAGGGAGATATGATTCACAATCTTCAACCTATTCGACTGCTGACTA-GGGAGATAGGATTCATCT
63 CAAGGAGATAAGACTCACAATCTTCAACCAATTCCACTACTAAC-AGGGGAGAGAGGATTCACCT
* *
30531011 ATTCCACTGCTAACCAGGGAGATA
127 ATTCCACTACTGACCAGGGAGATA
30531035 GGACTTACAA
Statistics
Matches: 349, Mismatches: 48, Indels: 24
0.83 0.11 0.06
Matches are distributed among these distances:
252 4 0.01
253 3 0.01
254 241 0.69
255 4 0.01
257 1 0.00
263 6 0.02
264 90 0.26
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (249 bp):
ACCTACTCCACTACTGCTCAGGAAGAGAAGATTCACAATCTTCAACCTATTACACTACTGACCAA
GGAGATAAGACTCACAATCTTCAACCAATTCCACTACTAACAGGGGAGAGAGGATTCACCTATTC
CACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTCCTTCCCTACTACCTCGGGAAGATAA
GATTCGCTATCTTCGATCCGCTCCACTGCTACTTAGGGAGATAGTGAATTGTCA
Found at i:30531120 original size:122 final size:122
Alignment explanation
Indices: 30530903--30531125 Score: 331
Period size: 122 Copynumber: 1.8 Consensus size: 122
30530893 CATTGTTGCT
* * * * * *
30530903 CAGGGAGATAGAATTCACAATCTTCAGCCTATTCTACTGCTGACCAGGGAGATATGATTCACAAT
1 CAGGGAGATAGAATTCACAATCTTAAACCTATTCCACTACTGACCAGGGAGATAGGACTCACAAT
* *
30530968 CTTCAACCTATTCGACTGCTGACTAGGGAGATAGGATTCATCTATTCCACTGCTAAC
66 CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCATCTATTCCACTGCTAAC
* *
30531025 CAGGGAGATAGGACTT-ACAATCTTAAACCTATTCCACTATTGACCAGGGAGATAGGACTCACAA
1 CAGGGAGATA-GAATTCACAATCTTAAACCTATTCCACTACTGACCAGGGAGATAGGACTCACAA
*
30531089 TCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGA
65 TCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
30531126 CTTACAATCT
Statistics
Matches: 89, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
122 85 0.96
123 4 0.04
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (122 bp):
CAGGGAGATAGAATTCACAATCTTAAACCTATTCCACTACTGACCAGGGAGATAGGACTCACAAT
CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCATCTATTCCACTGCTAAC
Found at i:30531120 original size:254 final size:254
Alignment explanation
Indices: 30530499--30531122 Score: 591
Period size: 254 Copynumber: 2.5 Consensus size: 254
30530489 ACAATCTTCA
* * *** * ** *
30530499 ACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTCCTTCCCTACTACCTCGG
1 ACCTATTCCACTGCTAACCAGGGAGATAAGGCTACAAGCTTAAACCTGATTCCCTACTACCTAGG
* * ** * ** *
30530564 GAAGATAAGATTCGCTGTCTTCGATCTGCTCCACTGCTACTTAGGGAGATAAGATCTGTAATTGT
66 GAAGATAAGACTCACAATCTTCGAACCACTCCACTGCTACTCAGGGAGATAAGATCTGTAATTGT
*
30530629 CAACCTACTCCACTACTGCTCAGGGAGAGAAGATTCACAATCTTTAACCTATTACACTACTGACC
131 CAACCTACTCCACTACTGCTCAGGGAGAGAAGATTCACAATCTTCAACCTATTACACTACTGACC
*
30530694 AAGGAGATAGGATTCATAATCTTCAACCTATTCCACTACTAACAGGGGAGAGAGGATTC
196 AAGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTAACAGGGGAGAGAGGATTC
* * * *** ** * * *
30530753 ACCTATTTCACTGTTGACCAGGGAGATAAGGCTAGTGGCTTAAATTTGCTTCCTTACTACCTTGG
1 ACCTATTCCACTGCTAACCAGGGAGATAAGGCTACAAGCTTAAACCTGATTCCCTACTACCTAGG
* * * * * * * *
30530818 GAAGATAAGATTCGCTATCTTCGATCCGCTGCACTGCTACTTAGGGAGATAAGATCTGTAATTTT
66 GAAGATAAGACTCACAATCTTCGAACCACTCCACTGCTACTCAGGGAGATAAGATCTGTAATTGT
* * ** * * *
30530883 CAACCTACTTCATTGTTGCTCAGGGAGA-TAGAATTCACAATCTTCAGCCTATT-CTACTGCTGA
131 CAACCTACTCCACTACTGCTCAGGGAGAGAAG-ATTCACAATCTTCAACCTATTAC-ACTACTGA
* * * * * *
30530946 CCAGGGAGATATGATTCACAATCTTCAACCTATTCGACTGCTGACTA-GGGAGATAGGATTC
194 CCAAGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTAAC-AGGGGAGAGAGGATTC
* * *
30531007 ATCTATTCCACTGCTAACCAGGGAGAT-AGGACTTACAATCTTAAACCT-ATTCCACTATTGACC
1 ACCTATTCCACTGCTAACCAGGGAGATAAGG-C-TACAAGCTTAAACCTGATTCC-CTACT-ACC
* * *
30531070 -AGGG-AGATAGGACTCACAATCTTC-AACCTATTCCACTGTTGAC-CAGGGAGATA
62 TAGGGAAGATAAGACTCACAATCTTCGAACC-ACTCCACTGCT-ACTCAGGGAGATA
30531123 GGACTTACAA
Statistics
Matches: 311, Mismatches: 50, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
253 9 0.03
254 281 0.90
255 18 0.06
256 3 0.01
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (254 bp):
ACCTATTCCACTGCTAACCAGGGAGATAAGGCTACAAGCTTAAACCTGATTCCCTACTACCTAGG
GAAGATAAGACTCACAATCTTCGAACCACTCCACTGCTACTCAGGGAGATAAGATCTGTAATTGT
CAACCTACTCCACTACTGCTCAGGGAGAGAAGATTCACAATCTTCAACCTATTACACTACTGACC
AAGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTAACAGGGGAGAGAGGATTC
Found at i:30531212 original size:684 final size:681
Alignment explanation
Indices: 30529557--30533745 Score: 3282
Period size: 684 Copynumber: 6.1 Consensus size: 681
30529547 ATCTGTAATT
* * *
30529557 TTCAACCTACTCCACAGCTG-CTCAGGGAGATAGGATTCACAATCTTCAACCTATTCCATTGCTG
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTG
* *
30529621 ACCAGGGGGATAGGATTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA-T----
65 ACCAGGGAGATAGGA-TT-C-A---T----CTATTCCACTACTGACCAGGGAGATAGGACTACAA
* *
30529681 TC----ACCTATTCCACTGCTAACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTT
120 TCTTAAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGTT
* * * * * *
30529742 GATCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTCCTGACTAGGGAGGTTGGACTTAC
185 GACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAGGACTTAC
* * * * ** *
30529807 AATCTTCAACCTGTTCCACTACTGACCAGGG-AGATAAGGCTAGTGGCTTACATCTGCTTCCCTA
250 AAGCTTAAACCTGCTCCACTACTGACCTGGGAAGATAAGAATAGTGGCTTAGATCTGCTTCCCTA
* * *** * ** * *
30529871 CTACCTTGGAAAGATAAGAATCGCCGTCTTCGATTTGGTCTACTACTGCTTAGAGAGATAAGATT
315 CTACCTCGGAAAGATAAGATTCGTAATCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATT
*** * * *
30529936 TGTAATTTTCAACCTACTCCACTGCTG-CTCAGGGAGATAGGATTCACAATCTTCAACCTCTTAC
380 CACAATTGTCAACCTACTACACTGCTGAC-CAGGGAGATAGGATTCACAATCTTCAACCTATTAC
* * * *
30530000 ACTACTGACC-AGGCAGATAGGATTCACAATCTTGAACCTATTCCACTACTGGC-AAGG-GAGA-
444 ACTACTGACCAAGG-AGATAGGA---A-AA--TTCAACCTATTCCACTGCTGACTAGGGAGAGAC
** * * * * * * * **** * ** *
30530061 TAGGA-TT-GACCTATTTCACTACTGACTAGGCATATATGACTTACAATCTTCAACCTATTCCAC
502 TACAACTTCAACCTATTCCACTACTGACCAGGGAGATAAGGC-TAGTGGCTTAAATTTCTTCC-C
* ** * * * ** * * *
30530124 TACTGACC-AGGG-AGATAAGGCTAG-TGGCTTAAATCTTCTTCCCTACTACCTTGGGAAGATAA
565 TACT-ACCTTGGGAAGATAAGATTCGCCGTCTTCGATCTGC-TCACTACTACTTTGGG-AGATAA
*** * * * * * ** ** *
30530186 GAT-TCGCCGTCTTCGATCTGCTCCACTACTGCTTTGGGAGATA-AGA-TCTGTAATT
627 GATCT-GTAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGA-ATTC-ACAATC
* * * * * *
30530241 TTCAACCTACTCCATTGCTG-CTCTGGGAGATAAGATTTACAATCTTCAACCTATTCCATTGCTG
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTG
*
30530305 ACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGATAGGA-T----
65 ACCAGGGAGATAGGATT--C-A---T----CTATTCCACTACTGACCAGGGAGATAGGACTACAA
* *
30530365 TC----ACCTATTCCACTGCTGACCAGGAAGATAGGACTTACAATCTTCAACCTATTCCACTGTT
120 TCTTAAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGTT
* * * * * **
30530426 GACCAGGGAGATAAGACTCACAATCTTTAACCAATTCCACTGCTTTCCAGGGAGATAGGACTTAC
185 GACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAGGACTTAC
* * ** * ** * *
30530491 AATCTTCAACCTATTCCACTACTGACCAGGG-AGATAAGGCTAGTGGCTTAAATCTCCTTCCCTA
250 AAGCTTAAACCTGCTCCACTACTGACCTGGGAAGATAAGAATAGTGGCTTAGATCTGCTTCCCTA
* * * * *
30530555 CTACCTCGGGAAGATAAGATTCGCT-GTCTTCGATCTGCTCCACTGCTACTTAGGGAGATAAGA-
315 CTACCTCGGAAAGATAAGATTCG-TAATCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGAT
** * * * * *
30530618 TCTGTAATTGTCAACCTACTCCACTACTG-CTCAGGGAGAGAAGATTCACAATCTTTAACCTATT
379 TC-ACAATTGTCAACCTACTACACTGCTGAC-CAGGGAGATAGGATTCACAATCTTCAACCTATT
* *
30530682 ACACTACTGACCAAGGAGATAGGATTCATAATCTTCAACCTATTCCACTACTAAC-AGGG-GAGA
442 ACACTACTGACCAAGGAGATAGGA---A-AA--TTCAACCTATTCCACTGCTGACTAGGGAGAGA
* ** * ** *
30530745 -GAGGA-TTC-ACCTATTTCACTGTTGACCAGGGAGATAAGGCTAGTGGCTTAAATTTGCTTCCT
501 CTACAACTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATTT-CTTCCC
** * * *
30530807 TACTACCTTGGGAAGATAAGATTCGCTATCTTCGATCCGCTGCACTGCTACTTAGGGAGATAAGA
565 TACTACCTTGGGAAGATAAGATTCGCCGTCTTCGATCTGCT-CACTACTACTTTGGGAGATAAGA
* * *
30530872 TCTGTAATTTTCAACCTACTTCATTGTTGCTCAGGGAGATAGAATTCACAATC
629 TCTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGAATTCACAATC
* * * *
30530925 TTCAGCCTATTCTACTGCTGACCAGGGAGATATGATTCACAATCTTCAACCTATTCGACTGCTGA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGA
* * *
30530990 CTAGGGAGATAGGATTCATCTATTCCACTGCTAACCAGGGAGATAGGACTTACAATCTTAAACCT
66 CCAGGGAGATAGGATTCATCTATTCCACTACTGACCAGGGAGATAGGAC-TACAATCTTAAACCT
**
30531055 ATTCCACTATTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGTTGACCAGGGAG
130 ATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGTTGACCAGGGAG
* * ***
30531120 ATAGGACTTACAATCTTCAACCTGTTCCACTTCTGACCAGGGAGATAAGG-C-TAGTGGCTTAAA
195 ATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGAT-AGGACTTACAAGCTTAAA
** * ** * * * *
30531183 TTTGCTCCCCTACT-ACCTTGGGAAGATAAGAATCACCGTCTTCGATTTG-GT--CTACTACTTC
259 CCTGCTCCACTACTGACC-TGGGAAGATAAGAAT-AGTGGCTTAGATCTGCTTCCCTACTAC--C
** * * * * * * * * *
30531244 TTAGAGAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGACATAGGATTCACAA
320 TCGGAAAGATAAGATTCGTAATCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATTCACAA
*** * * *
30531309 TCCACAACCT-CTTACACTGCTGACCAGGGAGATAGGATTCACAATATTCAACCTATTTCACTGC
385 TTGTCAACCTAC-TACACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTACACTAC
* * *
30531373 TGA-AAAGGGAGATAGG---ATT-GACCTATTTCACTGCTGACTAGGGAGATATGACTTACAATC
449 TGACCAA-GGAGATAGGAAAATTCAACCTATTCCACTGCTGACTAGGGAG--A-GAC-TACAA-C
*
30531433 TTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTACATCTTCTTCCCTACTACC
508 TTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAAT-TTCTTCCCTACTACC
* * * *
30531498 TTCGGAAGATATGATTCGCCGTCTTCAATCTGCTCAACTACTGCTTTGGGAGATAAGATCTGTAA
572 TTGGGAAGATAAGATTCGCCGTCTTCGATCTGCTC-ACTACTACTTTGGGAGATAAGATCTGTAA
* * *
30531563 TTTTCAACCTACTCCATTGCTGCTCTGGGAGATA-AGATTTACAATC
636 TTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGA-ATTCACAATC
*
30531609 TTCAACCTATTCCATTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGA
* * * * *
30531674 CCAAGGAGATAGGATTCACCTATTCCACTCCTGACCAGGGAGATAGGACTTAAAATCTTCAACCT
66 CCAGGGAGATAGGATTCATCTATTCCACTACTGACCAGGGAGATAGGAC-TACAATCTTAAACCT
* * *
30531739 ATTCCACTGTTGACCAGGGAGATAGGACTCACAATCTTTAACCAATTCCACTGCTT-ACCAGGGA
130 ATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTG-TTGACCAGGGA
* * ***
30531803 GATAGGACTTACAATCTTCAACCTGTTGCACTACTGACCAGGGAGATAAGG-C-TAGTGGCTTAA
194 GATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGAT-AGGACTTACAAGCTTAA
* ** ** * * *
30531866 ATCTGCTTCC-CTACT-ACCTTGGGAAGATAAGAATCACCGTATTTGATTTG-GT--CTACTACA
258 ACCTGC-TCCACTACTGACC-TGGGAAGATAAGAAT-AGTGGCTTAGATCTGCTTCCCTACTAC-
** * * * * * * *
30531926 GCT-TAAAGAGATAAGATTTGTAATTTTCAACCTACACCACTGCTGCTTAGGGAGATAGGATTCA
319 -CTCGGAA-AGATAAGATTCGTAATCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATTCA
*
30531990 CAATCTG-CAACCT-CTTACACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCA
382 CAAT-TGTCAACCTAC-TACACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTACA
*
30532053 CTACTGA-CAAGAGAGATAGG---ATGC-ACCTAGTT-CACTGCTGACTAGGGAGATATGACTTA
445 CTACTGACCAAG-GAGATAGGAAAATTCAACCTA-TTCCACTGCTGACTAGGGAG--A-GAC-TA
*
30532112 CAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAGTCTTCTTCCCTA
504 CAA-CTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAAT-TTCTTCCCTA
*
30532177 CTACCTTGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTTGGGAGATAAGATC
567 CTACCTTGGGAAGATAAGATTCGCCGTCTTCGATCTGCT-CACTACTACTTTGGGAGATAAGATC
* *
30532242 TGTAATTTTCAACCTACTGCACTGCTGCTCAGGGAGATAGGATTCACAATC
631 TGTAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGAATTCACAATC
* * *
30532293 TTCAACCTATTCCATTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGTTGA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGA
* * * * *
30532358 CCAGGGAGAGAGGATTCACCTATTCCACTGCTGACTAGGGAGATAGGACCTACAATCTTCAACCT
66 CCAGGGAGATAGGATTCATCTATTCCACTACTGACCAGGGAGATAGGA-CTACAATCTTAAACCT
* * * *
30532423 ATTCCACTGTTGACCAGGGAGATACGACTCATAATCTTCAACCTATTCCACTGCTGACCAGGGAG
130 ATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGTTGACCAGGGAG
* ***
30532488 ATATGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGG-C-TAGTGGCTTAAA
195 ATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGAT-AGGACTTACAAGCTTAAA
* * * * ** *
30532551 TCTGCTTCC-CTACT-ACCTTGGGAAGATAAGAATTGCCT-TCTTCGATCTGC-TCTATGACTGC
259 CCTGC-TCCACTACTGACC-TGGGAAGATAAGAATAG--TGGCTTAGATCTGCTTCCCT-ACTAC
* * * * * * * *
30532612 TTTGG-GAGATAAGA-TCTGTAATTTTC-AACTTACTCCACTACTGCTCACGGAGATAGGATTCA
319 CTCGGAAAGATAAGATTC-GTAATCTTCGATC-TACTCCACTACTGCTTAGGGAGATAAGATTCA
* * *
30532674 CAATCT-ACAACCTATTACACTGCTGACCAGAGAGATAGGATTCACAATCTTCAACCTATTACAC
382 CAAT-TGTCAACCTACTACACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTACAC
* * **
30532738 TACTGACAAAGGAGAT---AAGATTC-ACCTATTTTACTGCTGACTAGGGAGATATGACTTACAA
446 TACTGACCAAGGAGATAGGAAAATTCAACCTATTCCACTGCTGACTAGGGAG--A-GAC-TACAA
* *
30532799 TCTTCAACCTATTCAACTACTGACCAGAGAGATAAGGCTAGTGGCTTAAATTTTCTTCCCTACTA
507 -CTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAA-TTTCTTCCCTACTA
* ** * * *
30532864 CCTTGGGAAGATAAGATTCGCCATCTTTTATCTGCTCCACTACTACTTTGGGAAATAAGATTTAT
570 CCTTGGGAAGATAAGATTCGCCGTCTTCGATCTGCT-CACTACTACTTTGGGAGATAAGATCTGT
* * * *
30532929 AATTTTCAACCTACTCCATTGTTGCTCAGGGAGATAGGATTCAGAATC
634 AATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGAATTCACAATC
* *
30532977 TTCAACCTATTCCACTGCTGACCAAGGAGATAGG-------A--TTC-ACCTATCCCACTGCTGA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGA
* ***
30533032 CCAGGGAGATAGGACTTACAATCTTTAACCTATTCCTCTACTGACCAGGGAGATAAGG-CTAGTG
66 CCAGGGAGATAGGA-TT-C-A----T---CTATTCCACTACTGACCAGGGAGAT-AGGACTACAA
* * * * * * * ** * * ** *
30533096 GCTTAAATCTACTTCC-CTACT-ACCTTGGGAAGATAAGAATCGCCGTCTTCGATCTGCTCTACT
120 TCTTAAACCTA-TTCCACTGCTGACC-AGGG-AGATAGGACTCACAATCTTCAACCTATTCCACT
* * * * *
30533159 ATTG-CTTAGGGAGATAAGATCTGT--AATTTTCAACCTATTCCACTACTGACTAGGGAGATAGG
182 GTTGAC-CAGGGAGATAGGA-CT-TACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAGG
* * ** * * * ** * *
30533221 ACTTACAATCTTCAACCTATTCCACTACTAACC-AGGAAGACAAGGCTTGTGGCTTAAATCTGCT
244 ACTTACAAGCTTAAACCTGCTCCACTACTGACCTGGGAAGATAAGAATAGTGGCTTAGATCTGCT
* * *** * *
30533285 TCCCTACTACCTAGGAAAGATAAGATTTGCCGTCTTCGATCTACTCTACTATTGCTTAGGGAGAT
309 TCCCTACTACCTCGGAAAGATAAGATTCGTAATCTTCGATCTACTCCACTACTGCTTAGGGAGAT
** *** * * * *
30533350 AACTTTTGTAATTTTCAACCTA-TCCAGTGCT-ACTCAGGGAGATAGGATTCACAATTTTCAACC
374 AAGATTCACAATTGTCAACCTACTACACTGCTGAC-CAGGGAGATAGGATTCACAATCTTCAACC
* * * * * *
30533413 TATTTCACTATTGACGAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTGGCCATGGA
438 TATTACACTACTGACCAAGGAGATAGGA---A-AA--TTCAACCTATTCCACTGCTGACTA-GG-
* * * *
30533478 GATAAGACTTATAATCTTCAACCTATTCCACTACTGACTAGTGAGATAAGGCTAGTGGCTTAAAT
495 GA-GAGAC-TACAA-CTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAAT
* * * * *
30533543 CTACTTCTCTACTACCTTGGGAAGATAAGAATCGCCGTCTTCGATCTGCTCTACTACTGCTTAGG
557 -TTCTTCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTCGATCTGCTC-ACTACTACTTTGG
* * * * *
30533608 GAGAAAAGATCTGTAATTTTCAACCTTCTCCACTGTTGCTAAGGGAGATAGGATTCACAATC
620 GAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGAATTCACAATC
* * * *
30533670 TTCAACCTATTCCACTGCTGACTAGGGAGATAGGACTT-ACAATCTTCAACCTATTTCACTACCG
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTGCTG
30533734 ACCAGGGAGATA
65 ACCAGGGAGATA
30533746 AGGCTAGTGG
Statistics
Matches: 2974, Mismatches: 402, Indels: 239
0.82 0.11 0.07
Matches are distributed among these distances:
674 69 0.02
675 11 0.00
676 3 0.00
677 3 0.00
678 2 0.00
679 2 0.00
680 2 0.00
681 3 0.00
682 20 0.01
683 146 0.05
684 2373 0.80
685 79 0.03
686 6 0.00
687 4 0.00
689 1 0.00
690 1 0.00
692 5 0.00
693 211 0.07
694 3 0.00
695 2 0.00
700 1 0.00
702 3 0.00
703 24 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (681 bp):
TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGA
CCAGGGAGATAGGATTCATCTATTCCACTACTGACCAGGGAGATAGGACTACAATCTTAAACCTA
TTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGTTGACCAGGGAGA
TAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAGGACTTACAAGCTTAAACC
TGCTCCACTACTGACCTGGGAAGATAAGAATAGTGGCTTAGATCTGCTTCCCTACTACCTCGGAA
AGATAAGATTCGTAATCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATTCACAATTGTCA
ACCTACTACACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTACACTACTGACCAA
GGAGATAGGAAAATTCAACCTATTCCACTGCTGACTAGGGAGAGACTACAACTTCAACCTATTCC
ACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATTTCTTCCCTACTACCTTGGGAAGATAAGA
TTCGCCGTCTTCGATCTGCTCACTACTACTTTGGGAGATAAGATCTGTAATTTTCAACCTACTCC
ACTGCTGCTCAGGGAGATAGAATTCACAATC
Found at i:30531364 original size:640 final size:640
Alignment explanation
Indices: 30530113--30531420 Score: 1949
Period size: 640 Copynumber: 2.0 Consensus size: 640
30530103 ACAATCTTCA
* *
30530113 ACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTTCTTCCCTACTACCTTGG
1 ACCTATTTCACTGCTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTTCTTCCCTACTACCTTGG
* * * *
30530178 GAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTTGGGAGATAAGATCTGTAATTTT
66 GAAGATAAGATTCGCCATCTTCGATCCGCTCCACTACTACTTAGGGAGATAAGATCTGTAATTTT
* * *
30530243 CAACCTACTCCATTGCTGCTCTGGGAGATAAGATTTACAATCTTCAACCTATTCCATTGCTGACC
131 CAACCTACTCCATTGCTGCTCAGGGAGATAAGATTCACAATCTTCAACCTATTCCACTGCTGACC
30530308 AGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGATAGGATTCACCTAT
196 AGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGATAGGATTCACCTAT
* * *
30530373 TCCACTGCTGACCAGGAAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGAT
261 TCCACTGCTAACCAGGAAGATAGGACTTACAATCTTAAACCTATTCCACTATTGACCAGGGAGAT
* *
30530438 AAGACTCACAATCTTTAACCAATTCCACTGCTTTCCAGGGAGATAGGACTTACAATCTTCAACCT
326 AAGACTCACAATCTTCAACCAATTCCACTGCTTACCAGGGAGATAGGACTTACAATCTTCAACCT
*
30530503 ATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTCCTTCCCTACTACCTCGGGAAG
391 ATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTCCTCCCCTACTACCTCGGGAAG
* * * * *
30530568 ATAAGATTCGCTGTCTTCGATCTGCTCCACTGCTACTTAGGGAGATAAGATCTGTAATTGTCAAC
456 ATAAGAATCACCGTCTTCGATCTGCTCCACTACTACTTAGAGAGATAAGATCTGTAATTGTCAAC
* ***
30530633 CTACTCCACTACTGCTCAGGGAGAGAAGATTCACAATCTTTAACCTATTACACTACTGACCAAGG
521 CTACTCCACTACTGCTCAGGGACAGAAGATTCACAATCCACAACCTATTACACTACTGACCAAGG
* * *
30530698 AGATAGGATTCATAATCTTCAACCTATTCCACTACT-AACAGGGGAGAGAGGATTC
586 AGATAGGATTCACAATATTCAACCTATTCCACTACTGAA-AAGGGAGAGAGGATTC
* *
30530753 ACCTATTTCACTGTTGACCAGGGAGATAAGGCTAGTGGCTTAAAT-TTGCTTCCTTACTACCTTG
1 ACCTATTTCACTGCTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTT-CTTCCCTACTACCTTG
* * *
30530817 GGAAGATAAGATTCGCTATCTTCGATCCGCTGCACTGCTACTTAGGGAGATAAGATCTGTAATTT
65 GGAAGATAAGATTCGCCATCTTCGATCCGCTCCACTACTACTTAGGGAGATAAGATCTGTAATTT
* * * *
30530882 TCAACCTACTTCATTGTTGCTCAGGGAGAT-AGAATTCACAATCTTCAGCCTATTCTACTGCTGA
130 TCAACCTACTCCATTGCTGCTCAGGGAGATAAG-ATTCACAATCTTCAACCTATTCCACTGCTGA
* * * * * *
30530946 CCAGGGAGATATGATTCACAATCTTCAACCTATTCGACTGCTGACTAGGGAGATAGGATTCATCT
194 CCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGATAGGATTCACCT
*
30531011 ATTCCACTGCTAACCAGGGAGATAGGACTTACAATCTTAAACCTATTCCACTATTGACCAGGGAG
259 ATTCCACTGCTAACCAGGAAGATAGGACTTACAATCTTAAACCTATTCCACTATTGACCAGGGAG
* *
30531076 ATAGGACTCACAATCTTCAACCTATTCCACTG-TTGACCAGGGAGATAGGACTTACAATCTTCAA
324 ATAAGACTCACAATCTTCAACCAATTCCACTGCTT-ACCAGGGAGATAGGACTTACAATCTTCAA
* * * * *
30531140 CCTGTTCCACTTCTGACCAGGGAGATAAGGCTAGTGGCTTAAATTTGCTCCCCTACTACCTTGGG
388 CCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTCCTCCCCTACTACCTCGGG
* * * * * *
30531205 AAGATAAGAATCACCGTCTTCGATTTGGTCTACTACTTCTTAGAGAGATAAGATTTGTAATTTTC
453 AAGATAAGAATCACCGTCTTCGATCTGCTCCACTACTACTTAGAGAGATAAGATCTGTAATTGTC
* * * * *
30531270 AACCTACTCCACTGCTGCTCAGGGACATAGGATTCACAATCCACAACCTCTTACACTGCTGACCA
518 AACCTACTCCACTACTGCTCAGGGACAGAAGATTCACAATCCACAACCTATTACACTACTGACCA
* * * * *
30531335 GGGAGATAGGATTCACAATATTCAACCTATTTCACTGCTGAAAAGGGAGATAGGATTG
583 AGGAGATAGGATTCACAATATTCAACCTATTCCACTACTGAAAAGGGAGAGAGGATTC
*
30531393 ACCTATTTCACTGCTGACTAGGGAGATA
1 ACCTATTTCACTGCTGACCAGGGAGATA
30531421 TGACTTACAA
Statistics
Matches: 596, Mismatches: 68, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
639 6 0.01
640 588 0.99
641 2 0.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (640 bp):
ACCTATTTCACTGCTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTTCTTCCCTACTACCTTGG
GAAGATAAGATTCGCCATCTTCGATCCGCTCCACTACTACTTAGGGAGATAAGATCTGTAATTTT
CAACCTACTCCATTGCTGCTCAGGGAGATAAGATTCACAATCTTCAACCTATTCCACTGCTGACC
AGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGATAGGATTCACCTAT
TCCACTGCTAACCAGGAAGATAGGACTTACAATCTTAAACCTATTCCACTATTGACCAGGGAGAT
AAGACTCACAATCTTCAACCAATTCCACTGCTTACCAGGGAGATAGGACTTACAATCTTCAACCT
ATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTCCTCCCCTACTACCTCGGGAAG
ATAAGAATCACCGTCTTCGATCTGCTCCACTACTACTTAGAGAGATAAGATCTGTAATTGTCAAC
CTACTCCACTACTGCTCAGGGACAGAAGATTCACAATCCACAACCTATTACACTACTGACCAAGG
AGATAGGATTCACAATATTCAACCTATTCCACTACTGAAAAGGGAGAGAGGATTC
Found at i:30531387 original size:386 final size:376
Alignment explanation
Indices: 30530665--30531464 Score: 1034
Period size: 386 Copynumber: 2.1 Consensus size: 376
30530655 GAGAAGATTC
* * * * *
30530665 ACAATCTTTAACCTATTACACTACTGACCAAGGAGATAGGATTCATAATCTTCAACCTATTCCAC
1 ACAATCTTAAACCTATTCCACTACTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCAC
*
30530730 TACTAACAGGGGAGAGAGGATTCACCTATTTCACTGTTGACCAGGGAGATAAGGCTAGTGGCTTA
66 TACTAACAGGGGAGAGAGGATTCACCAATTTCACTGTTGACCAGGGAGATAAGGCTAGTGGCTTA
* * * * * *
30530795 AATTTGCTTCCTTACTACCTTGGGAAGATAAGATTCGCTATCTTCGATCCGCTGCACTGCTACTT
131 AATTTGCTCCCCTACTACCTTGGGAAGATAAGAATCACCATCTTCGATCCGCTGCACTACTACTT
* * * * *
30530860 AGGGAGATAAGATCTGTAATTTTCAACCTACTTCATTGTTGCTCAGGGAGATAGAATTCACAATC
196 AGAGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGACATAGAATTCACAATC
** * * *
30530925 TTCAGCCTATTCTACTGCTGACCAGGGAGATATGATTCACAATCTTCAACCTATTCGACTGCTGA
261 CACAACCTATTCTACTGCTGACCAGGGAGATAGGATTCACAATATTCAACCTATTCGACTGCTGA
** *
30530990 CTAGGGAGATAGGATTCATCTATTCCACTGCTAACCAGGGAGATAGGACTT
326 AAAGGGAGATAGGATTCACCTATTCCACTGCTAACCAGGGAGATAGGACTT
*
30531041 ACAATCTTAAACCTATTCCACTATTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCAC
1 ACAATCTTAAACCTATTCCACTACTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCAC
** * *
30531106 TGTTGACCA-GGGAGATAGGACTTACAATCTTCAACCTGTTCCACT-TCTGACCAGGGAGATAAG
66 TACT-AACAGGGGAGAGAGGA-TT-C-A-C--CAA--T-TT-CACTGT-TGACCAGGGAGATAAG
* ** *
30531169 GCTAGTGGCTTAAATTTGCTCCCCTACTACCTTGGGAAGATAAGAATCACCGTCTTCGATTTGGT
119 GCTAGTGGCTTAAATTTGCTCCCCTACTACCTTGGGAAGATAAGAATCACCATCTTCGATCCGCT
* *
30531234 -CTACTACTTCTTAGAGAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGACAT
184 GC-ACTACTACTTAGAGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGACAT
* *
30531298 AGGATTCACAATCCACAACCTCTTAC-ACTGCTGACCAGGGAGATAGGATTCACAATATTCAACC
248 AGAATTCACAATCCACAACCTATT-CTACTGCTGACCAGGGAGATAGGATTCACAATATTCAACC
* * * * *
30531362 TATTTC-ACTGCTGAAAAGGGAGATAGGATTGACCTATTTCACTGCTGACTAGGGAGATATGACT
312 TA-TTCGACTGCTGAAAAGGGAGATAGGATTCACCTATTCCACTGCTAACCAGGGAGATAGGACT
30531426 T
376 T
*
30531427 ACAATCTTCAACCTATTCCACTACTGACCAGGGAGATA
1 ACAATCTTAAACCTATTCCACTACTGACCAGGGAGATA
30531465 AGGCTAGTGG
Statistics
Matches: 364, Mismatches: 45, Indels: 20
0.85 0.10 0.05
Matches are distributed among these distances:
376 71 0.20
377 5 0.01
378 1 0.00
379 1 0.00
380 1 0.00
382 2 0.01
384 1 0.00
385 4 0.01
386 274 0.75
387 4 0.01
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (376 bp):
ACAATCTTAAACCTATTCCACTACTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCAC
TACTAACAGGGGAGAGAGGATTCACCAATTTCACTGTTGACCAGGGAGATAAGGCTAGTGGCTTA
AATTTGCTCCCCTACTACCTTGGGAAGATAAGAATCACCATCTTCGATCCGCTGCACTACTACTT
AGAGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGACATAGAATTCACAATC
CACAACCTATTCTACTGCTGACCAGGGAGATAGGATTCACAATATTCAACCTATTCGACTGCTGA
AAAGGGAGATAGGATTCACCTATTCCACTGCTAACCAGGGAGATAGGACTT
Found at i:30531428 original size:298 final size:298
Alignment explanation
Indices: 30531095--30531762 Score: 964
Period size: 298 Copynumber: 2.2 Consensus size: 298
30531085 ACAATCTTCA
* *
30531095 ACCTATTCCACTGTTGACCAGGGAGATAGGACTTACAATCTTCAACCTGTTCCACTTCTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTTCTGACCAG
*
30531160 GGAGATAAGGCTAGTGGCTTAAAT-TTGCTCCCCTACTACCTTGGGAAGATAAGAATCACCGTCT
66 GGAGATAAGGCTAGTGGCTTAAATCTT-CTCCCCTACTACCTTCGGAAGATAAGAATCACCGTCT
* * * * * *
30531224 TCGATTTGGTCTACTACTTCTTAGAGAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTGCT
130 TCAATCTGCTCAACTACTGCTTAGAGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGCT
* *
30531289 CAGGGACATAGGATTCACAATCCACAACCTCTTACACTGCTGACCAGGGAGATAGGATTCACAAT
195 CAGGGACATAAGATTCACAATCCACAACCTATTACACTGCTGACCAGGGAGATAGGATTCACAAT
* *
30531354 ATTCAACCTATTTCACTGCTGA-AAAGGGAGATAGGATTG
260 ATTCAACCTATTCCACTGCTGACAAA-GGAGATAGGATTC
* * * *
30531393 ACCTATTTCACTGCTGACTAGGGAGATATGACTTACAATCTTCAACCTATTCCACTACTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTTCTGACCAG
* * * * *
30531458 GGAGATAAGGCTAGTGGCTTACATCTTCTTCCCTACTACCTTCGGAAGATATGATTCGCCGTCTT
66 GGAGATAAGGCTAGTGGCTTAAATCTTCTCCCCTACTACCTTCGGAAGATAAGAATCACCGTCTT
* * *
30531523 CAATCTGCTCAACTACTGCTTTGGGAGATAAGATCTGTAATTTTCAACCTACTCCATTGCTGCTC
131 CAATCTGCTCAACTACTGCTTAGAGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGCTC
* * * ** * * *
30531588 TGGGAGATAAGATTTACAATCTTCAACCTATTCCATTGCTGACCAGGGAGATAGGATTCACAATC
196 AGGGACATAAGATTCACAATCCACAACCTATTACACTGCTGACCAGGGAGATAGGATTCACAATA
*
30531653 TTCAACCTATTCCACTGCTGACCAAGGAGATAGGATTC
261 TTCAACCTATTCCACTGCTGACAAAGGAGATAGGATTC
* *
30531691 ACCTATTCCACTCCTGACCAGGGAGATAGGACTTAAAATCTTCAACCTATTCCACTGT-TGACCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACT-TCTGACCA
30531755 GGGAGATA
65 GGGAGATA
30531763 GGACTCACAA
Statistics
Matches: 327, Mismatches: 40, Indels: 6
0.88 0.11 0.02
Matches are distributed among these distances:
298 323 0.99
299 4 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (298 bp):
ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTTCTGACCAG
GGAGATAAGGCTAGTGGCTTAAATCTTCTCCCCTACTACCTTCGGAAGATAAGAATCACCGTCTT
CAATCTGCTCAACTACTGCTTAGAGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGCTC
AGGGACATAAGATTCACAATCCACAACCTATTACACTGCTGACCAGGGAGATAGGATTCACAATA
TTCAACCTATTCCACTGCTGACAAAGGAGATAGGATTC
Found at i:30531551 original size:640 final size:639
Alignment explanation
Indices: 30530113--30531806 Score: 1839
Period size: 640 Copynumber: 2.6 Consensus size: 639
30530103 ACAATCTTCA
* * * *** * ** *
30530113 ACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTTCTTCCCTACTACCTTGG
1 ACCTATTTCACTGCTGACCAGGGAGATAAGACTACAAGCTTAAACCTGATTCCCTACTACCTAGG
* * * * * * * * * *
30530178 GAAGATAAGATTCGC-CGTCTTCGATCTGCTCCACTACTGCTTTGGGAGATAAGATCTGTAATTT
66 GAAGATAAGACTAGCTAG-CTTCGATCCGCTGCACTACTACTTAGGAAGATAAGATCTGCAATCT
* * * *
30530242 TCAACCTACTCCATTGCTGCTCTGGGAGATAAGATTTACAATCTTCAACCTATTCCATTGCTGAC
130 TCAACCTACTTCACTACTGCTCTGGGAGATAAGATTCACAATCTTCAACCTATTCCATTGCTGAC
* * * *
30530307 CAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGATAGGATTCACCTA
195 CAGGGAGATAAGATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCATCTA
* *
30530372 TTCCACTGCTGACCAGGAAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGA
260 TTCCACTGCTGACCAGGGAGATAGGACTTACAATCTT-AACCTATTCCACTATTGACCAGGGAGA
* * * *
30530437 TAAGACTCACAATCTTTAACCAATTCCACTGCTT-TCCAGGGAGATAGGACTTACAATCTTCAAC
324 TAGGACTCACAATCTTCAACCTATTCCACTG-TTGACCAGGGAGATAGGACTTACAATCTTCAAC
*
30530501 CTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTCCTTCCCTACTACCTCGGGA
388 CTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTCCTCCCCTACTACCTCGGGA
* * * * *
30530566 AGATAAGATTCGCTGTCTTCGATCTGCTCCACTGCTACTTAGGGAGATAAGATCTGTAATTGTCA
453 AGATAAGAATCACCGTCTTCGATCTGCTCCACTACTACTTAGAGAGATAAGATCTGTAATTGTCA
* ***
30530631 ACCTACTCCACTACTGCTCAGGGAGAGAAGATTCACAATCTTTAACCTATTACACTACTGACCAA
518 ACCTACTCCACTACTGCTCAGGGACAGAAGATTCACAATCCACAACCTATTACACTACTGACCAA
* * *
30530696 GGAGATAGGATTCATAATCTTCAACCTATTCCACTACTAACAGGGGAGAGAGGATTC
583 GGAGATAGGATTCACAATATTCAACCTATTCCACTACTAACAAGGGAGAGAGGATTC
* * *** ** * * *
30530753 ACCTATTTCACTGTTGACCAGGGAGATAAGGCTAGTGGCTTAAATTTGCTTCCTTACTACCTTGG
1 ACCTATTTCACTGCTGACCAGGGAGATAAGACTACAAGCTTAAACCTGATTCCCTACTACCTAGG
* * * * * * *
30530818 GAAGATAAGATTCGCTATCTTCGATCCGCTGCACTGCTACTTAGGGAGATAAGATCTGTAATTTT
66 GAAGATAAGACTAGCTAGCTTCGATCCGCTGCACTACTACTTAGGAAGATAAGATCTGCAATCTT
* ** * * * *
30530883 CAACCTACTTCATTGTTGCTCAGGGAGAT-AGAATTCACAATCTTCAGCCTATTCTACTGCTGAC
131 CAACCTACTTCACTACTGCTCTGGGAGATAAG-ATTCACAATCTTCAACCTATTCCATTGCTGAC
* * *
30530947 CAGGGAGATATGATTCACAATCTTCAACCTATTCGACTGCTGACTAGGGAGATAGGATTCATCTA
195 CAGGGAGATAAGATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCATCTA
*
30531012 TTCCACTGCTAACCAGGGAGATAGGACTTACAATCTTAAACCTATTCCACTATTGACCAGGGAGA
260 TTCCACTGCTGACCAGGGAGATAGGACTTACAATCTT-AACCTATTCCACTATTGACCAGGGAGA
30531077 TAGGACTCACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTTACAATCTTCAACC
324 TAGGACTCACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTTACAATCTTCAACC
* * * * *
30531142 TGTTCCACTTCTGACCAGGGAGATAAGGCTAGTGGCTTAAATTTGCTCCCCTACTACCTTGGGAA
389 TATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTCCTCCCCTACTACCTCGGGAA
* * * * * *
30531207 GATAAGAATCACCGTCTTCGATTTGGTCTACTACTTCTTAGAGAGATAAGATTTGTAATTTTCAA
454 GATAAGAATCACCGTCTTCGATCTGCTCCACTACTACTTAGAGAGATAAGATCTGTAATTGTCAA
* * * * * *
30531272 CCTACTCCACTGCTGCTCAGGGACATAGGATTCACAATCCACAACCTCTTACACTGCTGACCAGG
519 CCTACTCCACTACTGCTCAGGGACAGAAGATTCACAATCCACAACCTATTACACTACTGACCAAG
* * * *
30531337 GAGATAGGATTCACAATATTCAACCTATTTCACTGCTGAA-AAGGGAGATAGGATTG
584 GAGATAGGATTCACAATATTCAACCTATTCCACTACT-AACAAGGGAGAGAGGATTC
* * * *
30531393 ACCTATTTCACTGCTGACTAGGGAGATATGACTTACAATCTTCAACCT-ATTCCACTACTGACC-
1 ACCTATTTCACTGCTGACCAGGGAGATAAGAC-TACAAGCTTAAACCTGATTCC-CTACT-ACCT
* * ** * * * *
30531456 AGGG-AGATAAGGCTAG-TGGCTTAC-ATCTTCTTCCCTACTACCTTCGGAAGATATGAT-TCGC
63 AGGGAAGATAAGACTAGCTAGCTT-CGATCCGCTGCACTACTA-CTTAGGAAGATAAGATCT-GC
** * * * ** * *
30531517 CGTCTTCAATCTGC-TCAACTACTGCTTTGGGAGATAAGA-TCTGTAATTTTCAACCTACTCCAT
125 AATCTTCAACCTACTTC-ACTACTGCTCTGGGAGATAAGATTC-ACAATCTTCAACCTATTCCAT
* * *
30531580 TGCTG-CTCTGGGAGATAAGATTTACAATCTTCAACCTATTCCATTGCTGACCAGGGAGATAGGA
188 TGCTGAC-CAGGGAGATAAGATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
*
30531644 TTCACAATCTTCAACCTATTCCACTGCTGACCAAGGAGATAGGA--T----TC---ACCTATTCC
252 TT--C-A---T----CTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTAACCTATTCC
** * *
30531700 ACTCCTGACCAGGGAGATAGGACTTAAAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGG
307 ACTATTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGG
* * * * *
30531765 ACTCACAATCTTTAACCAATTCCACTGCTTACCAGGGAGATA
372 ACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATA
30531807 GGACTTACAA
Statistics
Matches: 899, Mismatches: 131, Indels: 48
0.83 0.12 0.04
Matches are distributed among these distances:
639 25 0.03
640 819 0.91
641 19 0.02
642 4 0.00
643 1 0.00
644 2 0.00
646 1 0.00
648 1 0.00
650 27 0.03
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (639 bp):
ACCTATTTCACTGCTGACCAGGGAGATAAGACTACAAGCTTAAACCTGATTCCCTACTACCTAGG
GAAGATAAGACTAGCTAGCTTCGATCCGCTGCACTACTACTTAGGAAGATAAGATCTGCAATCTT
CAACCTACTTCACTACTGCTCTGGGAGATAAGATTCACAATCTTCAACCTATTCCATTGCTGACC
AGGGAGATAAGATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCATCTAT
TCCACTGCTGACCAGGGAGATAGGACTTACAATCTTAACCTATTCCACTATTGACCAGGGAGATA
GGACTCACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTTACAATCTTCAACCTA
TTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTCCTCCCCTACTACCTCGGGAAGA
TAAGAATCACCGTCTTCGATCTGCTCCACTACTACTTAGAGAGATAAGATCTGTAATTGTCAACC
TACTCCACTACTGCTCAGGGACAGAAGATTCACAATCCACAACCTATTACACTACTGACCAAGGA
GATAGGATTCACAATATTCAACCTATTCCACTACTAACAAGGGAGAGAGGATTC
Found at i:30531598 original size:386 final size:384
Alignment explanation
Indices: 30530856--30532148 Score: 935
Period size: 386 Copynumber: 3.4 Consensus size: 384
30530846 CTGCACTGCT
* * * * *
30530856 ACTTAGGGAGATAAGATCTGTAATTTTCAACCTACTTCATTGTTGCTCAGGGAGATAGAATTCAC
1 ACTTAGGGAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTCAC
* *
30530921 AATCTTCAGCCTATTCTACTGCTGACCAGGGAGATATGATTCACAATCTTCAACCTA-TTCGACT
66 AATC--CAACCTATTC-ACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTTC-ACT
* * * *
30530985 GCTGACTAGGGAGATAGGATTCATCTATTCCACTGCTAACCAGGGAGATAGGACTTACAATCTTA
127 GCTGACAAGGGAGATAGGATTAACCTATTCCACTGCTAACCAGGGAGATAGGACTTACAATCTTC
* **** * * * **
30531050 AACCTATTCCACTATTGACCAGGGAGAT-AGGACTCACAATCTT-CAACCTATTCCACTGTTGAC
192 AACCTATTCCACTACTGACCAGGGAGATAAGG-CT-AGTGGCTTACATCTTCTTCC-CTACT-AC
* * ** * * * * * *
30531113 C--AGGGAGATAGGACTT-ACAATCTTCAACCTGTTCCACTTCTGAC-CAGGGAGATAAG-GCTA
253 CTTAGGAAGATAAGA-TTCACCGTCTTCAATCTGCTCAACTACTG-CTTAGGGAGATAAGATCT-
*** * ** * * * * ** * ** * *
30531173 GT-GGCTTAAATTTGCTCCCCTACTAC-CTTGGGAAGATAAGAATCACCGTCTTCGATTTGGTCT
315 GTAATTTTCAACCTACTCCACTGCTGCTC-TGGG-AGATAAGAATCACAATCTTCAACCTAGTCC
30531236 ACTACT-
378 ACTACTG
* * *
30531242 TCTTAGAGAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGACATAGGATTCAC
1 ACTTAGGGAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTCAC
* *
30531307 AATCCACAACCTCTTACACTGCTGACCAGGGAGATAGGATTCACAATATTCAACCTATTTCACTG
66 AAT-C-CAACCTATT-CACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTTCACTG
* * * * * *
30531372 CTGAAAAGGGAGATAGGATTGACCTATTTCACTGCTGACTAGGGAGATATGACTTACAATCTTCA
128 CTGACAAGGGAGATAGGATTAACCTATTCCACTGCTAACCAGGGAGATAGGACTTACAATCTTCA
*
30531437 ACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTACATCTTCTTCCCTACTACCTTCG
193 ACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTACATCTTCTTCCCTACTACCTTAG
* * *
30531502 GAAGATATGATTCGCCGTCTTCAATCTGCTCAACTACTGCTTTGGGAGATAAGATCTGTAATTTT
258 GAAGATAAGATTCACCGTCTTCAATCTGCTCAACTACTGCTTAGGGAGATAAGATCTGTAATTTT
* * * * * *
30531567 CAACCTACTCCATTGCTGCTCTGGGAGATAAGATTTACAATCTTCAACCTATTCCATTGCTG
323 CAACCTACTCCACTGCTGCTCTGGGAGATAAGAATCACAATCTTCAACCTAGTCCACTACTG
* * *** * * *
30531629 AC-CAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGAC-CAAGGAGATAGGA-T--
1 ACTTAGGGAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTG-CTCAGGGAGATAGGATTCA
* * *
30531689 ---T-C-ACCTATTCCACTCCTGACCAGGGAGATAGGACTT-AAAATCTTCAACCTATTCCACTG
65 CAATCCAACCTATT-CACTGCTGACCAGGGAGATAGGA-TTCACAATCTTCAACCTATTTCACTG
* * * *
30531748 TTGACCAGGGAGATAGGACTCACAATCTTTAACCAATTCCACTGCTTACCAGGGAGATAGGACTT
128 CTGACAAGGGAGATAGG-------A---TTAACCTATTCCACTGCTAACCAGGGAGATAGGACTT
* * * *
30531813 ACAATCTTCAACCTGTTGCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCT
183 ACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTACATCTTCTTCCCT
* * * ** * * * * **
30531878 ACTACCTTGGGAAGATAAGAATCACCGTATTTGATTTGGTCTACTACAGCTTAAAGAGATAAGAT
248 ACTACCTTAGGAAGATAAGATTCACCGTCTTCAATCTGCTCAACTACTGCTTAGGGAGATAAGAT
* * * * * ** *
30531943 TTGTAATTTTCAACCTACACCACTGCTGCT-TAGGGAGATAGGATTCACAATCTGCAACCTCTTA
313 CTGTAATTTTCAACCTACTCCACTGCTGCTCT-GGGAGATAAGAATCACAATCTTCAACCTAGTC
*
30532007 CACTGCTG
377 CACTACTG
* * *** * * * * *
30532015 AC-CAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGAC-AAGAGAGATAGG-----
1 ACTTAGGGAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTG-CTCAGGGAGATAGGATTCA
* * * * *
30532073 --ATGC-ACCTAGTTCACTGCTGACTAGGGAGATATGACTT-ACAATCTTCAACCTATTCCACTA
65 CAATCCAACCTA-TTCACTGCTGACCAGGGAGATAGGA-TTCACAATCTTCAACCTATTTCACTG
*
30532134 CTGACCAGGGAGATA
128 CTGACAAGGGAGATA
30532149 AGGCTAGTGG
Statistics
Matches: 747, Mismatches: 131, Indels: 58
0.80 0.14 0.06
Matches are distributed among these distances:
376 62 0.08
377 3 0.00
380 1 0.00
383 1 0.00
384 3 0.00
385 13 0.02
386 632 0.85
387 31 0.04
388 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (384 bp):
ACTTAGGGAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTCAC
AATCCAACCTATTCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTTCACTGCTG
ACAAGGGAGATAGGATTAACCTATTCCACTGCTAACCAGGGAGATAGGACTTACAATCTTCAACC
TATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTACATCTTCTTCCCTACTACCTTAGGAA
GATAAGATTCACCGTCTTCAATCTGCTCAACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAA
CCTACTCCACTGCTGCTCTGGGAGATAAGAATCACAATCTTCAACCTAGTCCACTACTG
Found at i:30531700 original size:34 final size:34
Alignment explanation
Indices: 30531657--30531721 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
30531647 ACAATCTTCA
*
30531657 ACCTATTCCACTGCTGACCAAGGAGATAGGATTC
1 ACCTATTCCACTCCTGACCAAGGAGATAGGATTC
*
30531691 ACCTATTCCACTCCTGACCAGGGAGATAGGA
1 ACCTATTCCACTCCTGACCAAGGAGATAGGA
30531722 CTTAAAATCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (34 bp):
ACCTATTCCACTCCTGACCAAGGAGATAGGATTC
Found at i:30531717 original size:122 final size:122
Alignment explanation
Indices: 30531589--30531809 Score: 352
Period size: 122 Copynumber: 1.8 Consensus size: 122
30531579 TTGCTGCTCT
* * * *
30531589 GGGAGATAAGATTTACAATCTTCAACCTATTCCATTGCTGACCAGGGAGATAGGATTCACAATCT
1 GGGAGATAAGACTTAAAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCT
*
30531654 TCAACCTATTCCACTGCTGACCAAGGAGATAGGATTCACCTATTCCACTCCTGACCA
66 TCAACCAATTCCACTGCTGACCAAGGAGATAGGATTCACCTATTCCACTCCTGACCA
* *
30531711 GGGAGATAGGACTTAAAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATCT
1 GGGAGATAAGACTTAAAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCT
* * *
30531776 TTAACCAATTCCACTGCTTACCAGGGAGATAGGA
66 TCAACCAATTCCACTGCTGACCAAGGAGATAGGA
30531810 CTTACAATCT
Statistics
Matches: 89, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
122 89 1.00
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.25
Consensus pattern (122 bp):
GGGAGATAAGACTTAAAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCT
TCAACCAATTCCACTGCTGACCAAGGAGATAGGATTCACCTATTCCACTCCTGACCA
Found at i:30531742 original size:78 final size:81
Alignment explanation
Indices: 30531613--30531850 Score: 286
Period size: 78 Copynumber: 2.9 Consensus size: 81
30531603 ACAATCTTCA
*
30531613 ACCTATTCCATTGCTGACCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTGCTGACCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTT-ACAATCTTCAACCTATTCCACTGCTGACCA
*
30531677 AGGAGATAGGA-T-TC-
65 GGGAGATAGGACTATCT
* * *
30531691 ACCTATTCCACTCCTGACCAGGGAGATAGGACTTAAAATCTTCAACCTATTCCACTGTTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCAG
30531756 GGAGATAGGACTCACAATCTTT
66 GGAGATAGGACT----ATC--T
* * * * *
30531778 AACCAATTCCACTGCTTACCAGGGAGATAGGACTTACAATCTTCAACCTGTTGCACTACTGACCA
1 -ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCA
30531843 GGGAGATA
65 GGGAGATA
30531851 AGGCTAGTGG
Statistics
Matches: 136, Mismatches: 13, Indels: 12
0.84 0.08 0.07
Matches are distributed among these distances:
78 67 0.49
79 3 0.02
84 2 0.01
88 64 0.47
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (81 bp):
ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCAG
GGAGATAGGACTATCT
Found at i:30531849 original size:298 final size:297
Alignment explanation
Indices: 30531095--30531852 Score: 758
Period size: 298 Copynumber: 2.5 Consensus size: 297
30531085 ACAATCTTCA
** * * *
30531095 ACCTATTCCACTGTTGACCAGGGAGATAGGACTTACAATCTTCAACCTGTTCCACTTCTGACCAG
1 ACCTATTCCACTCCTGACCAGGGAGATAGGACTTAAAATCTTCAACCTATTCCACTACTGACCAG
*** * **** * * * * **
30531160 GGAGATAAGGCTAGTGGCTTAAATTTGCTCCCCTACTACCTTGGGAAGATAAGAATCACCGTCTT
66 GGAGATAAGGCTACAAGCTTACATCCAATTCCCTACTACC-TAGGAAGATAGGATTCACAATCTT
* ** * * * * * *
30531225 CGATTTGGTCTACTACTTCTTAGAGAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTGCTC
130 CAACCTGCTCAACTACTGCTCAGGGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGCTC
* *
30531290 AGGGACATAGGATTCACAATCCACAACCTCTTACACTGCTGACCAGGGAGATAGGATTCACAATA
195 AGGGACATAAGATTCACAATCCACAACCTATTACACTGCTGACCAGGGAGATAGGATTCACAATA
* *
30531355 TTCAACCTATTTCACTGCTGAAAAGGGAGATAGGATTG
260 TTCAACCTATTCCACTGCTGAAAAGGGAGATAGGATTC
* * * * *
30531393 ACCTATTTCACTGCTGACTAGGGAGATATGACTTACAATCTTCAACCTATTCCACTACTGACCAG
1 ACCTATTCCACTCCTGACCAGGGAGATAGGACTTAAAATCTTCAACCTATTCCACTACTGACCAG
*** *** * * * **
30531458 GGAGATAAGGCTAGTGGCTTACATCTTCTTCCCTACTACCTTCGGAAGATATGATTCGCCGTCTT
66 GGAGATAAGGCTACAAGCTTACATCCAATTCCCTACTACC-TAGGAAGATAGGATTCACAATCTT
* ** *
30531523 CAATCTGCTCAACTACTGCTTTGGGAGATAAGATCTGTAATTTTCAACCTACTCCATTGCTGCTC
130 CAACCTGCTCAACTACTGCTCAGGGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGCTC
* * * ** * * *
30531588 TGGGAGATAAGATTTACAATCTTCAACCTATTCCATTGCTGACCAGGGAGATAGGATTCACAATC
195 AGGGACATAAGATTCACAATCCACAACCTATTACACTGCTGACCAGGGAGATAGGATTCACAATA
*
30531653 TTCAACCTATTCCACTGCTGACCAA-GGAGATAGGATTC
260 TTCAACCTATTCCACTGCTGA-AAAGGGAGATAGGATTC
**
30531691 ACCTATTCCACTCCTGACCAGGGAGATAGGACTTAAAATCTTCAACCTATTCCACTGTTGACCAG
1 ACCTATTCCACTCCTGACCAGGGAGATAGGACTTAAAATCTTCAACCTATTCCACTACTGACCAG
* * *
30531756 GGAGAT-AGGACTCACAATCTTTA-A-CCAATTCCACTGCTTACC-AGGGAGATAGGACTT-ACA
66 GGAGATAAGG-CT-ACAAGC-TTACATCCAATTCC-CTAC-TACCTAGGAAGATAGGA-TTCACA
*
30531816 ATCTTCAACCTGTTGC-ACTACTGAC-CAGGGAGATAAG
125 ATCTTCAACCTGCT-CAACTACTG-CTCAGGGAGATAAG
30531853 GCTAGTGGCT
Statistics
Matches: 390, Mismatches: 61, Indels: 18
0.83 0.13 0.04
Matches are distributed among these distances:
297 3 0.01
298 368 0.94
299 12 0.03
300 7 0.02
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.28
Consensus pattern (297 bp):
ACCTATTCCACTCCTGACCAGGGAGATAGGACTTAAAATCTTCAACCTATTCCACTACTGACCAG
GGAGATAAGGCTACAAGCTTACATCCAATTCCCTACTACCTAGGAAGATAGGATTCACAATCTTC
AACCTGCTCAACTACTGCTCAGGGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGCTCA
GGGACATAAGATTCACAATCCACAACCTATTACACTGCTGACCAGGGAGATAGGATTCACAATAT
TCAACCTATTCCACTGCTGAAAAGGGAGATAGGATTC
Found at i:30531896 original size:298 final size:292
Alignment explanation
Indices: 30531632--30532446 Score: 889
Period size: 298 Copynumber: 2.7 Consensus size: 292
30531622 ATTGCTGACC
* ** * * *
30531632 AGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGAC-CAAGGAGATAGGATTCACCTA
1 AGGGAGATAAGATTCGTAATTTTCAACCTACTCCACTGCTG-CTCAGGGAGATAGGATTCACCTA
* *
30531696 TTCCACTCCTGACCAGGGAGATAGGACTTAAAATCTTCAACCTATTCCACTGTTGACCAGGGAGA
65 TTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGA
* *
30531761 TAGGACTCACAATCTTTAACCAATTCCACTGCTTACCAGGGAGATAGGACTTACAATCTTCAACC
130 TAGGA-TCAC--TC--T-ACCAATTCCACTGCTGACTAGGGAGATAGGACTTACAATCTTCAACC
* *
30531826 TGTTGCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAA
189 TATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAA
* * * * * * *
30531891 GATAAGAATCACCGTATTTGATTTGGTCTACTACAGCTT
254 GATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTT
** * * *
30531930 AAAGAGATAAGATTTGTAATTTTCAACCTACACCACTGCTGCTTAGGGAGATAGGATTCACAATC
1 AGGGAGATAAGATTCGTAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTCAC---C
* **
30531995 TGCAACCTCTTACACTGCTGACCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTACTG
63 T---A----TTCCACTGCTGACCAGGGAGATAGGACTT-ACAATCTTCAACCTATTCCACTGTTG
* * * *
30532059 ACAAGAGAGATAGGATGCAC-CT---AGTT-CACTGCTGACTAGGGAGATATGACTTACAATCTT
120 ACCAGGGAGATAGGAT-CACTCTACCAATTCCACTGCTGACTAGGGAGATAGGACTTACAATCTT
* *
30532119 CAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAGTCTTCTTCCCTACTACCTT
184 CAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTT
*
30532184 GGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTT
249 GGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTT
* *
30532228 TGGGAGATAAGA-TCTGTAATTTTCAACCTACTGCACTGCTGCTCAGGGAGATAGGATTCACAAT
1 AGGGAGATAAGATTC-GTAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGG-------A-
* *
30532292 CTTCAACCTATTCCATTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGTTG
57 -TTC-ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTG
* * *
30532357 ACCAGGGAGAGAGGAT---TC-ACCTATTCCACTGCTGACTAGGGAGATAGGACCTACAATCTTC
120 ACCAGGGAGATAGGATCACTCTACCAATTCCACTGCTGACTAGGGAGATAGGACTTACAATCTTC
**
30532418 AACCTATTCCACTGTTGACCAGGGAGATA
185 AACCTATTCCACTACTGACCAGGGAGATA
30532447 CGACTCATAA
Statistics
Matches: 432, Mismatches: 55, Indels: 60
0.79 0.10 0.11
Matches are distributed among these distances:
295 1 0.00
297 4 0.01
298 343 0.79
299 4 0.01
301 2 0.00
302 1 0.00
303 1 0.00
304 1 0.00
305 4 0.01
307 6 0.01
308 65 0.15
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (292 bp):
AGGGAGATAAGATTCGTAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTCACCTAT
TCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGAT
AGGATCACTCTACCAATTCCACTGCTGACTAGGGAGATAGGACTTACAATCTTCAACCTATTCCA
CTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGA
TTCACCGTCTTCGATCTGCTCCACTACTGCTT
Found at i:30532238 original size:386 final size:386
Alignment explanation
Indices: 30531412--30532148 Score: 1057
Period size: 386 Copynumber: 1.9 Consensus size: 386
30531402 ACTGCTGACT
* **
30531412 AGGGAGATATGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCT
1 AGGGAGATAAGACTTACAATCTTCAACCTGCTCCACTACTGACCAGGGAGATAAGGCTAGTGGCT
* * * * * * *
30531477 TACATCTTCTTCCCTACTACCTTCGGAAGATATGATTCGCCGTCTTCAATCTGCTCAACTACTGC
66 TAAATCTGCTTCCCTACTACCTTCGGAAGATAAGAATCACCGTATTCAATCTGCTCAACTACAGC
*** * * *
30531542 TTTGGGAGATAAGATCTGTAATTTTCAACCTACTCCATTGCTGCTCTGGGAGATAAGATTTACAA
131 TTAAAGAGATAAGATCTGTAATTTTCAACCTACACCACTGCTGCTCTGGGAGATAAGATTCACAA
* * * *
30531607 TCTTCAACCTATTCCATTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCT
196 TCTGCAACCTATTACACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACT
*
30531672 GACCAAGGAGATAGGATTCACCTATTCCACTCCTGACCAGGGAGATAGGACTTAAAATCTTCAAC
261 GACCAAGGAGATAGGATGCACCTATTCCACTCCTGACCAGGGAGATAGGACTTAAAATCTTCAAC
** * *
30531737 CTATTCCACTGTTGACCAGGGAGATAGGACTCACAATCTTTAACCAATTCCACTGCTTACC
326 CTATTCCACTACTGACCAGGGAGATAGGACTCACAAGCTTTAACCAATTCCACTACTTACC
* * *
30531798 AGGGAGATAGGACTTACAATCTTCAACCTGTTGCACTACTGACCAGGGAGATAAGGCTAGTGGCT
1 AGGGAGATAAGACTTACAATCTTCAACCTGCTCCACTACTGACCAGGGAGATAAGGCTAGTGGCT
* ** * * *
30531863 TAAATCTGCTTCCCTACTACCTTGGGAAGATAAGAATCACCGTATTTGATTTGGTCTACTACAGC
66 TAAATCTGCTTCCCTACTACCTTCGGAAGATAAGAATCACCGTATTCAATCTGCTCAACTACAGC
* *
30531928 TTAAAGAGATAAGATTTGTAATTTTCAACCTACACCACTGCTGCT-TAGGGAGATAGGATTCACA
131 TTAAAGAGATAAGATCTGTAATTTTCAACCTACACCACTGCTGCTCT-GGGAGATAAGATTCACA
*
30531992 ATCTGCAACCTCTTACACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTAC
195 ATCTGCAACCTATTACACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTAC
* * * *
30532057 TGA-CAAGAGAGATAGGATGCACCTAGTT-CACTGCTGACTAGGGAGATATGACTTACAATCTTC
260 TGACCAAG-GAGATAGGATGCACCTA-TTCCACTCCTGACCAGGGAGATAGGACTTAAAATCTTC
30532120 AACCTATTCCACTACTGACCAGGGAGATA
323 AACCTATTCCACTACTGACCAGGGAGATA
30532149 AGGCTAGTGG
Statistics
Matches: 312, Mismatches: 36, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
385 5 0.02
386 305 0.98
387 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (386 bp):
AGGGAGATAAGACTTACAATCTTCAACCTGCTCCACTACTGACCAGGGAGATAAGGCTAGTGGCT
TAAATCTGCTTCCCTACTACCTTCGGAAGATAAGAATCACCGTATTCAATCTGCTCAACTACAGC
TTAAAGAGATAAGATCTGTAATTTTCAACCTACACCACTGCTGCTCTGGGAGATAAGATTCACAA
TCTGCAACCTATTACACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACT
GACCAAGGAGATAGGATGCACCTATTCCACTCCTGACCAGGGAGATAGGACTTAAAATCTTCAAC
CTATTCCACTACTGACCAGGGAGATAGGACTCACAAGCTTTAACCAATTCCACTACTTACC
Found at i:30532343 original size:386 final size:383
Alignment explanation
Indices: 30531999--30532830 Score: 1157
Period size: 386 Copynumber: 2.2 Consensus size: 383
30531989 ACAATCTGCA
* *
30531999 ACCTCTTACACTGCTGACCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTACTGA-CA
1 ACCTATTACACTGCTGACCAGGGAGATAGGACCT-ACAATCTTCAACCTATTCCACTACTGACCA
* *
30532062 -AGAGA-GA-T-AGGA-TGC-ACCTAGTT-CACTGCTGACTAGGGAGATATGACTTACAATCTTC
65 GAGAGACGACTCAGAACTGCAACCTA-TTCCACTGCTGACCAGGGAGATATGACTTACAATCTTC
* *
30532120 AACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAGTCTTCTTCCCTACTACCTTG
129 AACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTG
30532185 GGAAGATAAG-ATTCGCCGTCTTCGATCTGCTCCACT-ACTGCTTTGGGAGATAAGATCTGTAAT
194 GGAAGATAAGAATT-GCCGTCTTCGATCTGCTCCA-TGACTGCTTTGGGAGATAAGATCTGTAAT
* * * * * *
30532248 TTTCAACCTACTGCACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCTATTCCATTGCTG
257 TTTCAACCTACTCCACTACTGCTCACGGAGATAGGATTCACAATCTACAACCTATTACACTGCTG
* ** *
30532313 ACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGTTGACCAGGGAGAGAGGATTC
322 ACCAGAGAGATAGGACTCACAATCTTCAACCTACACCACTGCTGACCAGGGAGAGAGGATTC
* * **
30532375 ACCTATTCCACTGCTGACTAGGGAGATAGGACCTACAATCTTCAACCTATTCCACTGTTGACCAG
1 ACCTATTACACTGCTGACCAGGGAGATAGGACCTACAATCTTCAACCTATTCCACTACTGACCA-
* * *
30532440 GGAGATACGACTCATAATCTTCAACCTATTCCACTGCTGACCAGGGAGATATGACTTACAATCTT
65 -GAGAGACGACTCAGAA-CTGCAACCTATTCCACTGCTGACCAGGGAGATATGACTTACAATCTT
30532505 CAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTT
128 CAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTT
* *
30532570 GGGAAGATAAGAATTGCCTTCTTCGATCTGCTCTATGACTGCTTTGGGAGATAAGATCTGTAATT
193 GGGAAGATAAGAATTGCCGTCTTCGATCTGCTCCATGACTGCTTTGGGAGATAAGATCTGTAATT
*
30532635 TTCAACTTACTCCACTACTGCTCACGGAGATAGGATTCACAATCTACAACCTATTACACTGCTGA
258 TTCAACCTACTCCACTACTGCTCACGGAGATAGGATTCACAATCTACAACCTATTACACTGCTGA
* * * * * * *
30532700 CCAGAGAGATAGGATTCACAATCTTCAACCTATTA-CACTACTGACAAAGGAGATAAGATTC
323 CCAGAGAGATAGGACTCACAATCTTCAACCTA-CACCACTGCTGACCAGGGAGAGAGGATTC
** * * * *
30532761 ACCTATTTTACTGCTGACTAGGGAGATATGACTTACAATCTTCAACCTATTCAACTACTGACCAG
1 ACCTATTACACTGCTGACCAGGGAGATAGGACCTACAATCTTCAACCTATTCCACTACTGACCAG
30532826 AGAGA
66 AGAGA
30532831 TAAGGCTAGT
Statistics
Matches: 402, Mismatches: 39, Indels: 22
0.87 0.08 0.05
Matches are distributed among these distances:
376 53 0.13
377 3 0.01
380 4 0.01
381 2 0.00
382 1 0.00
383 2 0.00
384 5 0.01
385 5 0.01
386 323 0.80
387 4 0.01
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.28
Consensus pattern (383 bp):
ACCTATTACACTGCTGACCAGGGAGATAGGACCTACAATCTTCAACCTATTCCACTACTGACCAG
AGAGACGACTCAGAACTGCAACCTATTCCACTGCTGACCAGGGAGATATGACTTACAATCTTCAA
CCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGG
AAGATAAGAATTGCCGTCTTCGATCTGCTCCATGACTGCTTTGGGAGATAAGATCTGTAATTTTC
AACCTACTCCACTACTGCTCACGGAGATAGGATTCACAATCTACAACCTATTACACTGCTGACCA
GAGAGATAGGACTCACAATCTTCAACCTACACCACTGCTGACCAGGGAGAGAGGATTC
Found at i:30532384 original size:34 final size:34
Alignment explanation
Indices: 30532341--30532405 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
30532331 ACAATCTTCA
*
30532341 ACCTATTCCACTGTTGACCAGGGAGAGAGGATTC
1 ACCTATTCCACTGCTGACCAGGGAGAGAGGATTC
* *
30532375 ACCTATTCCACTGCTGACTAGGGAGATAGGA
1 ACCTATTCCACTGCTGACCAGGGAGAGAGGA
30532406 CCTACAATCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (34 bp):
ACCTATTCCACTGCTGACCAGGGAGAGAGGATTC
Found at i:30532426 original size:78 final size:82
Alignment explanation
Indices: 30532292--30532532 Score: 312
Period size: 78 Copynumber: 2.9 Consensus size: 82
30532282 GATTCACAAT
*
30532292 CTTCAACCTATTCCATTGCTGACCAGGGAGATAGGA-CTCACAATCTTCAACCTATTCCACTGTT
1 CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACCT-ACAATCTTCAACCTATTCCACTGTT
*
30532356 GACCAGGGAGA-G-AGGA
65 GACCAGGGAGACGCAGAA
*
30532372 -TTC-ACCTATTCCACTGCTGACTAGGGAGATAGGACCTACAATCTTCAACCTATTCCACTGTTG
1 CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACCTACAATCTTCAACCTATTCCACTGTTG
*
30532435 ACCAGGGAGATACGACTCATAA
66 ACCAGGGAG--ACG---CAGAA
* * **
30532457 TCTTCAACCTATTCCACTGCTGACCAGGGAGATATGACTTACAATCTTCAACCTATTCCACTACT
1 -CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACCTACAATCTTCAACCTATTCCACTGTT
30532522 GACCAGGGAGA
65 GACCAGGGAGA
30532533 TAAGGCTAGT
Statistics
Matches: 141, Mismatches: 9, Indels: 16
0.85 0.05 0.10
Matches are distributed among these distances:
78 64 0.45
79 5 0.04
80 1 0.01
81 1 0.01
85 2 0.01
86 1 0.01
87 3 0.02
88 64 0.45
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (82 bp):
CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACCTACAATCTTCAACCTATTCCACTGTTG
ACCAGGGAGACGCAGAA
Found at i:30532470 original size:122 final size:122
Alignment explanation
Indices: 30532261--30532488 Score: 370
Period size: 122 Copynumber: 1.9 Consensus size: 122
30532251 CAACCTACTG
* * *
30532261 CACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCTATTCCATTGCTGACCAGGGAGATAG
1 CACTGCTGCTCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAC
*
30532326 GACTCACAATCTTCAACCTATTCCACTGTTGACCAGGGAGAGAGGATTCACCTATTC
66 GACTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGAGAGGATTCACCTATTC
*
30532383 CACTGCTGACT-AGGGAGATAGGAC-CTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGAT
1 CACTGCTG-CTCAGGGAGATAGGACTC-ACAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
*
30532446 ACGACTCATAATCTTCAACCTATTCCACTGCTGACCAGGGAGA
64 ACGACTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGA
30532489 TATGACTTAC
Statistics
Matches: 98, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
121 1 0.01
122 95 0.97
123 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (122 bp):
CACTGCTGCTCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAC
GACTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGAGAGGATTCACCTATTC
Found at i:30532519 original size:298 final size:297
Alignment explanation
Indices: 30531787--30532522 Score: 800
Period size: 298 Copynumber: 2.5 Consensus size: 297
30531777 TAACCAATTC
* * * * *
30531787 CACTGCTTACCAGGGAGATAGGACTTACAATCTTCAACCTGTTGCACTACTGACCAGGGAGATAA
1 CACTGCTGACTAGGGAGATAGGACCTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAA
* * ** * * * ** * ** ** **
30531852 GGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGAATCACCGTATTTGATTTGG
66 GACTAGTAGCTTAAGCCT-ATTCCCTACTACCTAGGGAAGATAAGATTCACAATCTTCAACCTAC
* * *** * *
30531917 TCTACTACAGCTTAAAGAGATAAGATTTGTAATTTTCAACCTACACCACTGCTGCTTAGGGAGAT
130 TCCACTACTGCTTTGGGAGATAAGATCTGTAATTTTCAACCTACACCACTGCTGCTCAGGGAGAT
* *
30531982 AGGATTCACAATCTGCAACCTCTTACACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCT
195 AGGATTCACAATCTGCAACCTATTACACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCT
*
30532047 ATTCCACTACTGACAAGAGAGATAGGATGCACCTAGTT
260 ATTCCACTACTGACAAGAGAGAGAGGATGCACCTAGTT
* *
30532085 CACTGCTGACTAGGGAGATATGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAA
1 CACTGCTGACTAGGGAGATAGGACCTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAA
* * * * * * ** * * *
30532150 GGCTAGTGGCTTAAGTCTTCTTCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTCGATCTGC
66 GACTAGTAGCTTAAG-CCTATTCCCTACTACCTAGGGAAGATAAGATTCACAATCTTCAACCTAC
**
30532215 TCCACTACTGCTTTGGGAGATAAGATCTGTAATTTTCAACCTACTGCACTGCTGCTCAGGGAGAT
130 TCCACTACTGCTTTGGGAGATAAGATCTGTAATTTTCAACCTACACCACTGCTGCTCAGGGAGAT
* * *
30532280 AGGATTCACAATCTTCAACCTATTCCATTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCT
195 AGGATTCACAATCTGCAACCTATTACACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCT
** * * *
30532345 ATTCCACTGTTGACCAGGGAGAGAGGATTCACCTA-TT
260 ATTCCACTACTGACAAGAGAGAGAGGATGCACCTAGTT
**
30532382 CCACTGCTGACTAGGGAGATAGGACCTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATA
1 -CACTGCTGACTAGGGAGATAGGACCTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATA
* * * *
30532447 CGACTCA-TAATCTTCAA-CCTATTCCACTGCTGACC-AGGG-AGATATGACTT-ACAATCTTCA
65 AGACT-AGT-AGCTT-AAGCCTATTCC-CTACT-ACCTAGGGAAGATAAGA-TTCACAATCTTCA
*
30532507 ACCTATTCCACTACTG
124 ACCTACTCCACTACTG
30532523 ACCAGGGAGA
Statistics
Matches: 376, Mismatches: 54, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
297 2 0.01
298 355 0.94
299 14 0.04
300 5 0.01
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (297 bp):
CACTGCTGACTAGGGAGATAGGACCTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAA
GACTAGTAGCTTAAGCCTATTCCCTACTACCTAGGGAAGATAAGATTCACAATCTTCAACCTACT
CCACTACTGCTTTGGGAGATAAGATCTGTAATTTTCAACCTACACCACTGCTGCTCAGGGAGATA
GGATTCACAATCTGCAACCTATTACACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTA
TTCCACTACTGACAAGAGAGAGAGGATGCACCTAGTT
Found at i:30532621 original size:298 final size:287
Alignment explanation
Indices: 30532317--30532971 Score: 724
Period size: 298 Copynumber: 2.2 Consensus size: 287
30532307 TTGCTGACCA
* * * * *
30532317 GGGAGATAGGACTCACAATCTTCAACCTATTCCACTGTTGAC-CAGGGAGAGAGGATTCACCTAT
1 GGGAGATAAGA-TCATAATTTTCAACCTACTCCACTGTTG-CTCAGGGAGATAGGATTCACCTAT
* * * * ** * *
30532381 TCCACTGCTGACTAGGGAGATAGGAC-CTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGA
64 TACACTGCTGACCAGAGAGATAGGACTC-ACAATCTTCAACCTATTACACTACTGACAAAGGAGA
30532445 TACGACTCATAATCTTCAACCTATTCCACTGCTGACCAGGGAGATATGACTTACAATCTTCAACC
128 T---A---A-AA--TTC-ACCTATTCCACTGCTGACCAGGGAGATATGACTTACAATCTTCAACC
* *
30532510 TATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAA
183 TATTCAACTACTGACCAGAGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAA
* * *
30532575 GATAAGAATT-GCCTTCTTCGATCTGCTCTA-TGACTGCTTT
248 GATAAG-ATTCGCCATCTTCGATCTGCTCCACT-ACTACTTT
* * ** *
30532615 GGGAGATAAGATCTGTAATTTTCAACTTACTCCACTACTGCTCACGGAGATAGGATTCACAATCT
1 GGGAGATAAGATC-ATAATTTTCAACCTACTCCACTGTTGCTCAGGGAGATAGG-------AT-T
*
30532680 ACAACCTATTACACTGCTGACCAGAGAGATAGGATTCACAATCTTCAACCTATTACACTACTGAC
57 -C-ACCTATTACACTGCTGACCAGAGAGATAGGACTCACAATCTTCAACCTATTACACTACTGAC
* ** *
30532745 AAAGGAGATAAGATTCACCTATTTTACTGCTGACTAGGGAGATATGACTTACAATCTTCAACCTA
120 AAAGGAGATAAAATTCACCTATTCCACTGCTGACCAGGGAGATATGACTTACAATCTTCAACCTA
* *
30532810 TTCAACTACTGACCAGAGAGATAAGGCTAGTGGCTTAAATTTTCTTCCCTACTACCTTGGGAAGA
185 TTCAACTACTGACCAGAGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGA
**
30532875 TAAGATTCGCCATCTTTTATCTGCTCCACTACTACTTT
250 TAAGATTCGCCATCTTCGATCTGCTCCACTACTACTTT
* * *
30532913 GGGAAATAAGATTTATAATTTTCAACCTACTCCATTGTTGCTCAGGGAGATAGGATTCA
1 GGGAGATAAGA-TCATAATTTTCAACCTACTCCACTGTTGCTCAGGGAGATAGGATTCA
30532972 GAATCTTCAA
Statistics
Matches: 301, Mismatches: 40, Indels: 42
0.79 0.10 0.11
Matches are distributed among these distances:
288 1 0.00
289 1 0.00
290 1 0.00
291 2 0.01
297 6 0.02
298 217 0.72
299 5 0.02
301 1 0.00
302 1 0.00
305 3 0.01
306 1 0.00
307 1 0.00
308 60 0.20
309 1 0.00
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.29
Consensus pattern (287 bp):
GGGAGATAAGATCATAATTTTCAACCTACTCCACTGTTGCTCAGGGAGATAGGATTCACCTATTA
CACTGCTGACCAGAGAGATAGGACTCACAATCTTCAACCTATTACACTACTGACAAAGGAGATAA
AATTCACCTATTCCACTGCTGACCAGGGAGATATGACTTACAATCTTCAACCTATTCAACTACTG
ACCAGAGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCC
ATCTTCGATCTGCTCCACTACTACTTT
Found at i:30532709 original size:44 final size:44
Alignment explanation
Indices: 30532660--30532762 Score: 154
Period size: 44 Copynumber: 2.3 Consensus size: 44
30532650 TACTGCTCAC
* *
30532660 GGAGATAGGATTCACAATCTACAACCTATTACACTGCTGAC-CA
1 GGAGATAGGATTCACAATCTACAACCTATTACACTACTGACAAA
*
30532703 GAGAGATAGGATTCACAATCTTCAACCTATTACACTACTGACAAA
1 G-GAGATAGGATTCACAATCTACAACCTATTACACTACTGACAAA
*
30532748 GGAGATAAGATTCAC
1 GGAGATAGGATTCAC
30532763 CTATTTTACT
Statistics
Matches: 54, Mismatches: 4, Indels: 3
0.89 0.07 0.05
Matches are distributed among these distances:
43 1 0.02
44 51 0.94
45 2 0.04
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.23
Consensus pattern (44 bp):
GGAGATAGGATTCACAATCTACAACCTATTACACTACTGACAAA
Found at i:30532985 original size:298 final size:298
Alignment explanation
Indices: 30532463--30533016 Score: 853
Period size: 298 Copynumber: 1.9 Consensus size: 298
30532453 ATAATCTTCA
*
30532463 ACCTATTCCACTGCTGACCAGGGAGATATGACTTACAATCTTCAACCTATTCCACTACTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATATGACTTACAATCTTCAACCTATTCAACTACTGACCAG
* *
30532528 GGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGAATTGCCTTCTT
66 AGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGAATTGCCATCTT
* * * * *
30532593 CGATCTGCTCTATGACTGCTTTGGGAGATAAGATCTGTAATTTTCAACTTACTCCACTACTGCTC
131 CGATCTGCTCCATGACTACTTTGGGAAATAAGATCTATAATTTTCAACCTACTCCACTACTGCTC
30532658 ACGGAGATAGGATTCACAATCTACAACCTATTACACTGCTGACC-AGAGAGATAGGATTCACAAT
196 ACGGAGATAGGATTCACAATCTACAACCTATTACACTGCTGACCAAG-GAGATAGGATTCACAAT
30532722 CTTCAACCTATTACACTACTGACAAAGGAGATAAGATTC
260 CTTCAACCTATTACACTACTGACAAAGGAGATAAGATTC
** *
30532761 ACCTATTTTACTGCTGACTAGGGAGATATGACTTACAATCTTCAACCTATTCAACTACTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATATGACTTACAATCTTCAACCTATTCAACTACTGACCAG
* *
30532826 AGAGATAAGGCTAGTGGCTTAAATTTTCTTCCCTACTACCTTGGGAAGATAAG-ATTCGCCATCT
66 AGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGAATT-GCCATCT
** * * **
30532890 TTTATCTGCTCCACT-ACTACTTTGGGAAATAAGATTTATAATTTTCAACCTACTCCATTGTTGC
130 TCGATCTGCTCCA-TGACTACTTTGGGAAATAAGATCTATAATTTTCAACCTACTCCACTACTGC
* * * *
30532954 TCAGGGAGATAGGATTCAGAATCTTCAACCTATTCCACTGCTGACCAAGGAGATAGGATTCAC
194 TCACGGAGATAGGATTCACAATCTACAACCTATTACACTGCTGACCAAGGAGATAGGATTCAC
30533017 CTATCCCACT
Statistics
Matches: 230, Mismatches: 23, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
297 3 0.01
298 224 0.97
299 3 0.01
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (298 bp):
ACCTATTCCACTGCTGACCAGGGAGATATGACTTACAATCTTCAACCTATTCAACTACTGACCAG
AGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGAATTGCCATCTT
CGATCTGCTCCATGACTACTTTGGGAAATAAGATCTATAATTTTCAACCTACTCCACTACTGCTC
ACGGAGATAGGATTCACAATCTACAACCTATTACACTGCTGACCAAGGAGATAGGATTCACAATC
TTCAACCTATTACACTACTGACAAAGGAGATAAGATTC
Found at i:30532986 original size:254 final size:254
Alignment explanation
Indices: 30532681--30533249 Score: 782
Period size: 254 Copynumber: 2.2 Consensus size: 254
30532671 TCACAATCTA
* * * * * *
30532681 CAACCTATTACACTGCTGACCAGAGAGATAGGATTCACAATCTTCAACCTATTACACTACTGACA
1 CAACCTACTCCACTACTGACTAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACA
*** * *
30532746 AAGGAGATAAGATTCACCTATTTTACTGCTGACTAGGGAGATATGACTTACAATCTTCAACCTAT
66 AAGGAGATAAGATTCACCTATCCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTAT
* *
30532811 TCAACTACTGACCAGAGAGATAAGGCTAGTGGCTTAAATTTTCTTCCCTACTACCTTGGGAAGAT
131 TCAACTACTGACCAGAGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAGAT
* ** * *
30532876 AAGATTCGCCATCTTTTATCTGCTCCACTACTACTTTGGGAAATAAGATTTATAATTTT
196 AAGAATCGCCATCTTCGATCTGCTCCACTACTACTTAGGGAAATAAGATCTATAATTTT
* ** * *
30532935 CAACCTACTCCATTGTTG-CTCAGGGAGATAGGATTCAGAATCTTCAACCTATTCCACTGCTGAC
1 CAACCTACTCCACTACTGACT-AGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGAC
* * *
30532999 CAAGGAGATAGGATTCACCTATCCCACTGCTGACCAGGGAGATAGGACTTACAATCTTTAACCTA
65 AAAGGAGATAAGATTCACCTATCCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTA
** *
30533064 TTCCTCTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAGA
130 TTCAACTACTGACCAGAGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAGA
* * * * * *
30533129 TAAGAATCGCCGTCTTCGATCTGCTCTACTATTGCTTAGGGAGATAAGATCTGTAATTTT
195 TAAGAATCGCCATCTTCGATCTGCTCCACTACTACTTAGGGAAATAAGATCTATAATTTT
*
30533189 CAACCTATTCCACTACTGACTAGGGAGATAGGACTT-ACAATCTTCAACCTATTCCACTACT
1 CAACCTACTCCACTACTGACTAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTACT
30533250 AACCAGGAAG
Statistics
Matches: 273, Mismatches: 39, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
253 1 0.00
254 268 0.98
255 4 0.01
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.30
Consensus pattern (254 bp):
CAACCTACTCCACTACTGACTAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACA
AAGGAGATAAGATTCACCTATCCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTAT
TCAACTACTGACCAGAGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAGAT
AAGAATCGCCATCTTCGATCTGCTCCACTACTACTTAGGGAAATAAGATCTATAATTTT
Found at i:30533026 original size:34 final size:34
Alignment explanation
Indices: 30532981--30533045 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
30532971 AGAATCTTCA
*
30532981 ACCTATTCCACTGCTGACCAAGGAGATAGGATTC
1 ACCTATCCCACTGCTGACCAAGGAGATAGGATTC
*
30533015 ACCTATCCCACTGCTGACCAGGGAGATAGGA
1 ACCTATCCCACTGCTGACCAAGGAGATAGGA
30533046 CTTACAATCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.20
Consensus pattern (34 bp):
ACCTATCCCACTGCTGACCAAGGAGATAGGATTC
Found at i:30533065 original size:298 final size:297
Alignment explanation
Indices: 30532419--30533086 Score: 812
Period size: 298 Copynumber: 2.2 Consensus size: 297
30532409 ACAATCTTCA
* * * * *
30532419 ACCTATTCCACTGTTGACCAGGGAGATACGACTCATAATCTTCAACCTATTCCACTGCTGACCAG
1 ACCTATCCCACTGATGACCAGGGAGATAGGACTTA-AATCTTTAACCTATTCCACTGCTGACCAG
* *
30532484 GGAGATATGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTA
65 GGAGATATGACTTACAATCTTCAACCTATTCAACTACTGACCAGAGAGATAAGGCTAGTGGCTTA
* * *
30532549 AATCTGCTTCCCTACTACCTTGGGAAGATAAGAATTGCCTTCTTCGATCTGCTCTATGACTGCTT
130 AATCTGCTTCCCTACTACCTTGGGAAGATAAGAATTGCCATCTTCGATCTGCTCCATGACTACTT
* * *
30532614 TGGGAGATAAGATCTGTAATTTTCAACTTACTCCACTACTGCTCACGGAGATAGGATTCACAATC
195 TGGGAAATAAGATCTATAATTTTCAACCTACTCCACTACTGCTCACGGAGATAGGATTCACAATC
30532679 TACAACCTATTACACTGCTGACCAGAGAGATAGGATTC
260 TACAACCTATTACACTGCTGACCAGAGAGATAGGATTC
* * * ** * * ** * **
30532717 A-CAATCTTCAACCT-ATTACACTACTGACAAAGGAGATAAGA---TTCACCTATTTTACTGCTG
1 ACCTATC--CCA-CTGATGAC-C-AGGGAGATAGGACTTAA-ATCTTTAACCTATTCCACTGCTG
*
30532777 ACTAGGGAGATATGACTTACAATCTTCAACCTATTCAACTACTGACCAGAGAGATAAGGCTAGTG
60 ACCAGGGAGATATGACTTACAATCTTCAACCTATTCAACTACTGACCAGAGAGATAAGGCTAGTG
* * **
30532842 GCTTAAATTTTCTTCCCTACTACCTTGGGAAGATAAG-ATTCGCCATCTTTTATCTGCTCCACT-
125 GCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGAATT-GCCATCTTCGATCTGCTCCA-TG
* * ** *
30532905 ACTACTTTGGGAAATAAGATTTATAATTTTCAACCTACTCCATTGTTGCTCAGGGAGATAGGATT
188 ACTACTTTGGGAAATAAGATCTATAATTTTCAACCTACTCCACTACTGCTCACGGAGATAGGATT
* * *
30532970 CAGAATCTTCAACCTATTCCACTGCTGACCA-AGGAGATAGGATTC
253 CACAATCTACAACCTATTACACTGCTGACCAGA-GAGATAGGATTC
* * *
30533015 ACCTATCCCACTGCTGACCAGGGAGATAGGACTTACAATCTTTAACCTATTCCTCTACTGACCAG
1 ACCTATCCCACTGATGACCAGGGAGATAGGACTTA-AATCTTTAACCTATTCCACTGCTGACCAG
30533080 GGAGATA
65 GGAGATA
30533087 AGGCTAGTGG
Statistics
Matches: 301, Mismatches: 54, Indels: 30
0.78 0.14 0.08
Matches are distributed among these distances:
295 11 0.04
296 4 0.01
297 12 0.04
298 251 0.83
299 10 0.03
300 4 0.01
301 9 0.03
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (297 bp):
ACCTATCCCACTGATGACCAGGGAGATAGGACTTAAATCTTTAACCTATTCCACTGCTGACCAGG
GAGATATGACTTACAATCTTCAACCTATTCAACTACTGACCAGAGAGATAAGGCTAGTGGCTTAA
ATCTGCTTCCCTACTACCTTGGGAAGATAAGAATTGCCATCTTCGATCTGCTCCATGACTACTTT
GGGAAATAAGATCTATAATTTTCAACCTACTCCACTACTGCTCACGGAGATAGGATTCACAATCT
ACAACCTATTACACTGCTGACCAGAGAGATAGGATTC
Found at i:30533213 original size:44 final size:44
Alignment explanation
Indices: 30533165--30534133 Score: 191
Period size: 44 Copynumber: 22.3 Consensus size: 44
30533155 TACTATTGCT
*
30533165 TAGGGAGATAAGATCTGTAATTTTCAACCTATTCCACTACTGAC
1 TAGGGAGATAAGATCTGTAATCTTCAACCTATTCCACTACTGAC
* *
30533209 TAGGGAGATAGGA-CT-TACAATCTTCAACCTATTCCACTACTAAC
1 TAGGGAGATAAGATCTGT--AATCTTCAACCTATTCCACTACTGAC
* * * * ** * * *
30533253 CAGGAAGACAAG-GCTTGT-GGCTTAAATCTGCTTCC-CTACT-ACC
1 TAGGGAGATAAGATC-TGTAATCTTCAACCT-ATTCCACTACTGA-C
* * *** * * * * *
30533296 TAGGAAAGATAAGATTTGCCGTCTTCGATCTACTCTACTATTG-C
1 TAGG-GAGATAAGATCTGTAATCTTCAACCTATTCCACTACTGAC
** * * * *
30533340 TTAGGGAGATAACTTTTGTAATTTTCAACCTA-TCCAGTGCT-AC
1 -TAGGGAGATAAGATCTGTAATCTTCAACCTATTCCACTACTGAC
* ** * * *
30533383 TCAGGGAGATAGGAT-TCACAATTTTCAACCTATTTCACTATTGAC
1 T-AGGGAGATAAGATCT-GTAATCTTCAACCTATTCCACTACTGAC
* * ** * *
30533428 GAGGGAGATAGGA-CTCACAATCTTCAACCTATTCCACTGCTGGC
1 TAGGGAGATAAGATCT-GTAATCTTCAACCTATTCCACTACTGAC
* * *
30533472 CATGGAGATAAGA-CTTATAATCTTCAACCTATTCCACTACTGAC
1 TAGGGAGATAAGATC-TGTAATCTTCAACCTATTCCACTACTGAC
* * ** * * *
30533516 TAGTGAGATAAG-GCTAGT-GGCTTAAATCTACTT-CTCTACT-ACC
1 TAGGGAGATAAGATCT-GTAATCTTCAACCTA-TTCCACTACTGA-C
* *** * * ** *
30533559 TTGGGAAGATAAGAATC-GCCGTCTTCGATCTGCTCTACTACTG-C
1 TAGGG-AGATAAG-ATCTGTAATCTTCAACCTATTCCACTACTGAC
* * **
30533603 TTAGGGAGAAAAGATCTGTAATTTTCAACCT-TCTCCACTGTTG-C
1 -TAGGGAGATAAGATCTGTAATCTTCAACCTAT-TCCACTACTGAC
* ** *
30533647 TAAGGGAGATAGGAT-TCACAATCTTCAACCTATTCCACTGCTGAC
1 T-AGGGAGATAAGATCT-GTAATCTTCAACCTATTCCACTACTGAC
* * *
30533692 TAGGGAGATAGGA-CT-TACAATCTTCAACCTATTTCACTACCGAC
1 TAGGGAGATAAGATCTGT--AATCTTCAACCTATTCCACTACTGAC
* * ** * * *
30533736 CAGGGAGATAAG-GCTAGT-GGCTTAAATCTGCTTCC-CTACT-ACC
1 TAGGGAGATAAGATCT-GTAATCTTCAACCT-ATTCCACTACTGA-C
* *** ** ** ** * *
30533779 TCGGGAAGATAAGAT-TCGCCGTCTTTGATTTGCTGCACTGCTG-C
1 TAGGG-AGATAAGATCT-GTAATCTTCAACCTATTCCACTACTGAC
* *
30533823 TTAGGGAGATAAGATCTGTAATTTTCAACCTACTT-CATTACTG-C
1 -TAGGGAGATAAGATCTGTAATCTTCAACCTA-TTCCACTACTGAC
** * * *
30533867 TCAGGGAGAT-AGAAT-TCACAATCTTCAGCCTATTCTACTGCTGAC
1 T-AGGGAGATAAG-ATCT-GTAATCTTCAACCTATTCCACTACTGAC
* * ** *
30533912 CAGGGAGATAGGAT-TCACAATCTTCAACCTATTCCACTGCTGAC
1 TAGGGAGATAAGATCT-GTAATCTTCAACCTATTCCACTACTGAC
* * *
30533956 CAGGGAGAT-AG----G--A--TTC-ATCTATTCCACTACTAAC
1 TAGGGAGATAAGATCTGTAATCTTCAACCTATTCCACTACTGAC
* * **
30533990 CAGGGAGATAGGA-CT-TACAATCTTCAACCTATTCCACTGTTGAC
1 TAGGGAGATAAGATCTGT--AATCTTCAACCTATTCCACTACTGAC
* * ** * *
30534034 CAGGGAGATAGGA-CTCACAATCTTCAACCTATTCCGCTGCTGAC
1 TAGGGAGATAAGATCT-GTAATCTTCAACCTATTCCACTACTGAC
* * *
30534078 CAGGGAGATAGGA-CT-TACAATCTTCAACCTGTTCCACTACTGAC
1 TAGGGAGATAAGATCTGT--AATCTTCAACCTATTCCACTACTGAC
*
30534122 CAGGGAGATAAG
1 TAGGGAGATAAG
30534134 GCTAGTGGCT
Statistics
Matches: 687, Mismatches: 164, Indels: 148
0.69 0.16 0.15
Matches are distributed among these distances:
34 24 0.03
35 4 0.01
37 1 0.00
41 1 0.00
42 6 0.01
43 96 0.14
44 493 0.72
45 59 0.09
46 3 0.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (44 bp):
TAGGGAGATAAGATCTGTAATCTTCAACCTATTCCACTACTGAC
Found at i:30533334 original size:176 final size:176
Alignment explanation
Indices: 30533015--30533422 Score: 588
Period size: 176 Copynumber: 2.3 Consensus size: 176
30533005 GATAGGATTC
* * * * *
30533015 ACCTATCCCACTGCTGACCAGGGAGATAGGACTTACAATCTTTAACCTATTCCTCTACTGACCAG
1 ACCTATTCCACTGCTGACTAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTAACCAG
* * * *
30533080 GGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAGATAAGAATCGCCGTCTT
66 GAAGACAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTAGGAAAGATAAGAATCGCCGTCTT
* *
30533145 CGATCTGCTCTACTATTGCTTAGGGAGATAAGATCTGTAATTTTCA
131 CGATCTACTCTACTATTGCTTAGGGAGATAACATCTGTAATTTTCA
*
30533191 ACCTATTCCACTACTGACTAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTAACCAG
1 ACCTATTCCACTGCTGACTAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTAACCAG
* * * *
30533256 GAAGACAAGGCTTGTGGCTTAAATCTGCTTCCCTACTACCTAGGAAAGATAAGATTTGCCGTCTT
66 GAAGACAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTAGGAAAGATAAGAATCGCCGTCTT
* *
30533321 CGATCTACTCTACTATTGCTTAGGGAGATAACTTTTGTAATTTTCA
131 CGATCTACTCTACTATTGCTTAGGGAGATAACATCTGTAATTTTCA
* * *
30533367 ACCTA-TCCAGTGCT-ACTCAGGGAGATAGGA-TTCACAATTTTCAACCTATTTCACTA
1 ACCTATTCCACTGCTGACT-AGGGAGATAGGACTT-ACAATCTTCAACCTATTCCACTA
30533423 TTGACGAGGG
Statistics
Matches: 208, Mismatches: 22, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
174 5 0.02
175 40 0.19
176 163 0.78
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.30
Consensus pattern (176 bp):
ACCTATTCCACTGCTGACTAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTAACCAG
GAAGACAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTAGGAAAGATAAGAATCGCCGTCTT
CGATCTACTCTACTATTGCTTAGGGAGATAACATCTGTAATTTTCA
Found at i:30533406 original size:43 final size:44
Alignment explanation
Indices: 30533359--30534131 Score: 290
Period size: 44 Copynumber: 17.8 Consensus size: 44
30533349 TAACTTTTGT
* *
30533359 AATTTTCAACCTA-TCCAGTGCT-ACTCAGGGAGATAGGATTCAC
1 AATTTTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGACTCAC
* ** *
30533402 AATTTTCAACCTATTTCACTATTGACGAGGGAGATAGGACTCAC
1 AATTTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCAC
* * * * * *
30533446 AATCTTCAACCTATTCCACTGCTGGCCATGGAGATAAGACTTAT
1 AATTTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCAC
* * * * *
30533490 AATCTTCAACCTATTCCACTACTGACTAGTGAGATAAGG-CT-AG
1 AATTTTCAACCTATTCCACTGCTGACCAGGGAGAT-AGGACTCAC
**** * * * * * * * *
30533533 TGGCTTAAATCTACTT-CTCTACT-ACCTTGGGAAGATAAGAATCGC
1 AATTTTCAACCTA-TTCCACTGCTGACC-AGGG-AGATAGGACTCAC
** * * * ** * * * * * **
30533578 CGTCTTCGATCTGCTCTACTACTG-CTTAGGGAGAAAAGA-TCTGT
1 AATTTTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGACTC-AC
* * *
30533622 AATTTTCAACCT-TCTCCACTGTTG-CTAAGGGAGATAGGATTCAC
1 AATTTTCAACCTAT-TCCACTGCTGAC-CAGGGAGATAGGACTCAC
* * *
30533666 AATCTTCAACCTATTCCACTGCTGACTAGGGAGATAGGACTTAC
1 AATTTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCAC
* * * * *
30533710 AATCTTCAACCTATTTCACTACCGACCAGGGAGATAAGG-CT-AG
1 AATTTTCAACCTATTCCACTGCTGACCAGGGAGAT-AGGACTCAC
**** * * * * * * * *
30533753 TGGCTTAAATCTGCTTCC-CTACT-ACCTCGGGAAGATAAGATTCGC
1 AATTTTCAACCT-ATTCCACTGCTGACC-AGGG-AGATAGGACTCAC
** * ** ** * * * **
30533798 CGTCTTT-GATTTGCTGCACTGCTG-CTTAGGGAGATAAGA-TCTGT
1 AAT-TTTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGACTC-AC
* * * *
30533842 AATTTTCAACCTACTT-CATTACTG-CTCAGGGAGATAGAATTCAC
1 AATTTTCAACCTA-TTCCACTGCTGAC-CAGGGAGATAGGACTCAC
* * * *
30533886 AATCTTCAGCCTATTCTACTGCTGACCAGGGAGATAGGATTCAC
1 AATTTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCAC
*
30533930 AATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGG------
1 AATTTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCAC
* * * *
30533968 -A--TTC-ATCTATTCCACTACTAACCAGGGAGATAGGACTTAC
1 AATTTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCAC
* *
30534008 AATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCAC
1 AATTTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCAC
* * *
30534052 AATCTTCAACCTATTCCGCTGCTGACCAGGGAGATAGGACTTAC
1 AATTTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCAC
* * *
30534096 AATCTTCAACCTGTTCCACTACTGACCAGGGAGATA
1 AATTTTCAACCTATTCCACTGCTGACCAGGGAGATA
30534132 AGGCTAGTGG
Statistics
Matches: 555, Mismatches: 133, Indels: 83
0.72 0.17 0.11
Matches are distributed among these distances:
34 27 0.05
35 3 0.01
37 1 0.00
41 1 0.00
42 5 0.01
43 61 0.11
44 411 0.74
45 44 0.08
46 2 0.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (44 bp):
AATTTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCAC
Found at i:30533668 original size:220 final size:220
Alignment explanation
Indices: 30533015--30533965 Score: 1000
Period size: 220 Copynumber: 4.3 Consensus size: 220
30533005 GATAGGATTC
* * *
30533015 ACCTATCCCACTGCTGACCAGGGAGATAGGACTTACAATCTTTAACCTATTCCTCTACTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAG
30533080 GGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAGATAAGAATCGCCGTCTT
66 GGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAGATAAGAATCGCCGTCTT
*
30533145 CGATCTGCTCTACTATTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTATTCCACTACTGACT
131 CGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTATTCCACTACTGACT
30533210 AGGGAGATAGGACTT-ACAATCTTCA
196 AGGGAGATAGGA-TTCACAATCTTCA
* * * * **** * * *
30533235 ACCTATTCCACTACTAACCAGGAAGACAAGG-CTT-GTGGCTTAAATCTGCTTCC-CTACT-ACC
1 ACCTATTCCACTGCTGACCAGGGAGA-TAGGACTTACAATCTTCAACCT-ATTCCACTACTGACC
* ** * * * ** * *** *
30533296 TAGGAAAGATAAGATTTGCCGTCTTCGATCTAC-T--CTACTATTGCTTAGGG-AGATAACTTTT
64 -AGG-GAGATAAGGCTAG-TGGCTTAAATCTACTTCCCTACTA--CCTT-GGGAAGATAAGAATC
*** * * * * * * * * * * ** *
30533357 GTAATTTTCAACCT-ATCCAGTGCTACTCAGGGAGATAGGAT-TCACAATTTTCAACCTATTTCA
123 GCCGTCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGATCT-GTAATTTTCAACCTATTCCA
* * *
30533420 CTATTGACGAGGGAGATAGGACTCACAATCTTCA
187 CTACTGACTAGGGAGATAGGATTCACAATCTTCA
* * * * *
30533454 ACCTATTCCACTGCTGGCCATGGAGATAAGACTTATAATCTTCAACCTATTCCACTACTGACTAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAG
* *
30533519 TGAGATAAGGCTAGTGGCTTAAATCTACTTCTCTACTACCTTGGGAAGATAAGAATCGCCGTCTT
66 GGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAGATAAGAATCGCCGTCTT
* **
30533584 CGATCTGCTCTACTACTGCTTAGGGAGAAAAGATCTGTAATTTTCAACCT-TCTCCACTGTTG-C
131 CGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTAT-TCCACTACTGAC
30533647 TAAGGGAGATAGGATTCACAATCTTCA
195 T-AGGGAGATAGGATTCACAATCTTCA
* * *
30533674 ACCTATTCCACTGCTGACTAGGGAGATAGGACTTACAATCTTCAACCTATTTCACTACCGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAG
* * *
30533739 GGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCGCCGTCTT
66 GGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAGATAAGAATCGCCGTCTT
* * * *
30533804 TGATTTGCTGC-ACTGCTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTACTT-CATTACTG-
131 CGATCTGCT-CTACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTA-TTCCACTACTGA
*
30533866 CTCAGGGAGATAGAATTCACAATCTTCA
194 CT-AGGGAGATAGGATTCACAATCTTCA
* * *
30533894 GCCTATTCTACTGCTGACCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTGCTGACCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTT-ACAATCTTCAACCTATTCCACTACTGACCA
30533958 GGGAGATA
65 GGGAGATA
30533966 GGATTCATCT
Statistics
Matches: 583, Mismatches: 122, Indels: 52
0.77 0.16 0.07
Matches are distributed among these distances:
218 26 0.04
219 140 0.24
220 389 0.67
221 27 0.05
222 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (220 bp):
ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAG
GGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAGATAAGAATCGCCGTCTT
CGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTATTCCACTACTGACT
AGGGAGATAGGATTCACAATCTTCA
Found at i:30533741 original size:88 final size:86
Alignment explanation
Indices: 30533649--30534131 Score: 339
Period size: 88 Copynumber: 5.6 Consensus size: 86
30533639 ACTGTTGCTA
* *
30533649 AGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACTAGGGAGATAGGACTTACAATC
1 AGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAGGA-TTACAATC
* * *
30533714 TTCAACCTATTTCACTACCGACC
64 TTCAACCTATTCCACTGCTGACC
* **** * * * * * * *
30533737 AGGGAGATAAGG-CTAGTGGCTTAAATCTGCTTCC-CTACT-ACCTCGGGAAGATAAGATTCGCC
1 AGGGAGAT-AGGATTACAATCTTCAACCT-ATTCCACTACTGACC-AGGG-AGATAGGATT-ACA
* ** ** ** * *
30533799 GTCTTTGATTTGCTGCACTGCTG-CTT
61 ATCTTCAACCTATTCCACTGCTGAC-C
* ** * * *
30533825 AGGGAGATAAGATCTGTAATTTTCAACCTACTT-CATTACTG-CTCAGGGAGATAGAATTCACAA
1 AGGGAGATAGGAT-TACAATCTTCAACCTA-TTCCACTACTGAC-CAGGGAGATAGGATT-ACAA
* *
30533888 TCTTCAGCCTATTCTACTGCTGACC
62 TCTTCAACCTATTCCACTGCTGACC
*
30533913 AGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATT-C-A---
1 AGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAGGATTACAATCT
* *
30533973 T----CTATTCCACTACTAACC
65 TCAACCTATTCCACTGCTGACC
** *
30533991 AGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATC
1 AGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAGGA-TTACAATC
*
30534056 TTCAACCTATTCCGCTGCTGACC
64 TTCAACCTATTCCACTGCTGACC
*
30534079 AGGGAGATAGGACTTACAATCTTCAACCTGTTCCACTACTGACCAGGGAGATA
1 AGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATA
30534132 AGGCTAGTGG
Statistics
Matches: 297, Mismatches: 71, Indels: 54
0.70 0.17 0.13
Matches are distributed among these distances:
78 66 0.22
79 3 0.01
80 1 0.00
81 1 0.00
82 1 0.00
84 1 0.00
85 1 0.00
86 3 0.01
87 23 0.08
88 174 0.59
89 22 0.07
90 1 0.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (86 bp):
AGGGAGATAGGATTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAGGATTACAATCTT
CAACCTATTCCACTGCTGACC
Found at i:30533999 original size:78 final size:81
Alignment explanation
Indices: 30533889--30534131 Score: 305
Period size: 78 Copynumber: 3.0 Consensus size: 81
30533879 AATTCACAAT
* *
30533889 CTTCAGCCTATTCTACTGCTGACCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTGCT
1 CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTT-ACAATCTTCAACCTATTCCACTGCT
30533953 GACCAGGGAGATAGG-A
65 GACCAGGGAGATAGGAA
* * * *
30533969 -TTC-ATCTATTCCACTACTAACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTG
1 CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTG
30534032 ACCAGGGAGATAGGACTCACAA
66 ACCAGGGAGATAGG------AA
* * *
30534054 TCTTCAACCTATTCCGCTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTGTTCCACTACT
1 -CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCT
30534119 GACCAGGGAGATA
65 GACCAGGGAGATA
30534132 AGGCTAGTGG
Statistics
Matches: 139, Mismatches: 13, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
78 65 0.47
79 5 0.04
85 1 0.01
87 3 0.02
88 65 0.47
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (81 bp):
CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTG
ACCAGGGAGATAGGAA
Found at i:30534085 original size:122 final size:122
Alignment explanation
Indices: 30533868--30534090 Score: 376
Period size: 122 Copynumber: 1.8 Consensus size: 122
30533858 CATTACTGCT
* * *
30533868 CAGGGAGATAGAATTCACAATCTTCAGCCTATTCTACTGCTGACCAGGGAGATAGGATTCACAAT
1 CAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAAT
30533933 CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCATCTATTCCACTACTAAC
66 CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCATCTATTCCACTACTAAC
* *
30533990 CAGGGAGATAGGACTT-ACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAA
1 CAGGGAGATA-GAATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAA
*
30534054 TCTTCAACCTATTCCGCTGCTGACCAGGGAGATAGGA
65 TCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
30534091 CTTACAATCT
Statistics
Matches: 94, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
122 90 0.96
123 4 0.04
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (122 bp):
CAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAAT
CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCATCTATTCCACTACTAAC
Found at i:30535328 original size:15 final size:15
Alignment explanation
Indices: 30535308--30535336 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
30535298 ATACCTCACA
30535308 CACCGTGTTATCAAT
1 CACCGTGTTATCAAT
30535323 CACCGTGTTATCAA
1 CACCGTGTTATCAA
30535337 GCAACAATAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.31
Consensus pattern (15 bp):
CACCGTGTTATCAAT
Found at i:30540950 original size:8 final size:8
Alignment explanation
Indices: 30540939--30540971 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
30540929 TATGTTCATG
30540939 ATTTCACA
1 ATTTCACA
30540947 ATTTCACA
1 ATTTCACA
30540955 ATTTCACA
1 ATTTCACA
*
30540963 AATTCACA
1 ATTTCACA
30540971 A
1 A
30540972 ATAAACATCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.42, C:0.24, G:0.00, T:0.33
Consensus pattern (8 bp):
ATTTCACA
Found at i:30555000 original size:16 final size:16
Alignment explanation
Indices: 30554979--30555009 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
30554969 TCGGGCTATA
*
30554979 ACTGTGCATTTCAAAC
1 ACTGTGCATGTCAAAC
30554995 ACTGTGCATGTCAAA
1 ACTGTGCATGTCAAA
30555010 AATAGCATAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (16 bp):
ACTGTGCATGTCAAAC
Found at i:30581097 original size:28 final size:28
Alignment explanation
Indices: 30581057--30581266 Score: 377
Period size: 28 Copynumber: 7.5 Consensus size: 28
30581047 TAAATTGTAC
*
30581057 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
30581085 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
30581113 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
30581141 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
30581169 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
30581197 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
30581225 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
30581252 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
30581267 GACTTAATAT
Statistics
Matches: 179, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
27 24 0.13
28 155 0.87
ACGTcount: A:0.26, C:0.12, G:0.29, T:0.34
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:30581174 original size:84 final size:84
Alignment explanation
Indices: 30581032--30581266 Score: 382
Period size: 84 Copynumber: 2.8 Consensus size: 84
30581022 GAGATTGGCG
* * * * *
30581032 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGT
1 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGT
30581097 GCGAGTTTGATTATGTAGCA
65 GCGAGTTTGATTATGTAGCA
*
30581117 CTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTG
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTG
30581182 CGAGTTTGATTATGTAGCA
66 CGAGTTTGATTATGTAGCA
* *
30581201 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAG-TTGATTATATAGCACTGAGTGTG
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTG
30581265 CG
66 CG
30581267 GACTTAATAT
Statistics
Matches: 141, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
83 23 0.16
84 103 0.73
85 15 0.11
ACGTcount: A:0.26, C:0.12, G:0.29, T:0.34
Consensus pattern (84 bp):
CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTG
CGAGTTTGATTATGTAGCA
Found at i:30586228 original size:37 final size:37
Alignment explanation
Indices: 30586187--30586355 Score: 203
Period size: 37 Copynumber: 4.6 Consensus size: 37
30586177 CAAGTTACAC
* *** *
30586187 TCAGTATAACAGTAGGATTTGCTCGATTGAAAGTCCT
1 TCAGTATAACAGTAAGATTTGCTCGATTGAGCTTCAT
* *
30586224 TCAGTATAACAGTAACATTTGCTCGGTTGAGCTTCAT
1 TCAGTATAACAGTAAGATTTGCTCGATTGAGCTTCAT
* * * *
30586261 ACAGTATAATAGTAAGATTTTCTCGATTGAGCTTCTT
1 TCAGTATAACAGTAAGATTTGCTCGATTGAGCTTCAT
* * *
30586298 TCAGTATAACGGTACGATTTCCTCGATTGAGCTTCAT
1 TCAGTATAACAGTAAGATTTGCTCGATTGAGCTTCAT
*
30586335 TCAGTATAACGGTAAGATTTG
1 TCAGTATAACAGTAAGATTTG
30586356 GTTCGATATA
Statistics
Matches: 111, Mismatches: 21, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 111 1.00
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.36
Consensus pattern (37 bp):
TCAGTATAACAGTAAGATTTGCTCGATTGAGCTTCAT
Found at i:30589413 original size:50 final size:50
Alignment explanation
Indices: 30589338--30589629 Score: 342
Period size: 50 Copynumber: 5.9 Consensus size: 50
30589328 CATTTGGGTA
*
30589338 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
*
30589388 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCCTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
*
30589438 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* * * * *
30589488 GAGAGGTCTCC-CGTAAGACCATGTCTGGGACATGGCATGGGCACCAATAT
1 AAGAGGTC-CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* ** * * * * *
30589538 GAGAACTCCCATGTAATACCATATCTGGGATATGGTATTGGCAGTAC-AGGA-
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA--CCGA-GAT
* * *
30589589 AACA--TCCCATGTAAGACCATGTCTAGGACATGGCTTTGGCA
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
30589630 TGTTATTATT
Statistics
Matches: 211, Mismatches: 26, Indels: 11
0.85 0.10 0.04
Matches are distributed among these distances:
49 33 0.16
50 171 0.81
51 5 0.02
52 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (50 bp):
AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
Found at i:30591484 original size:22 final size:22
Alignment explanation
Indices: 30591459--30591503 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
30591449 AAAAAATATG
30591459 TTAAAAGAACAAAAATGAAAAA
1 TTAAAAGAACAAAAATGAAAAA
** * *
30591481 TTAAATTACCCAAAATGAAAAA
1 TTAAAAGAACAAAAATGAAAAA
30591503 T
1 T
30591504 ATAGGGTCCA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.64, C:0.09, G:0.07, T:0.20
Consensus pattern (22 bp):
TTAAAAGAACAAAAATGAAAAA
Found at i:30592954 original size:16 final size:17
Alignment explanation
Indices: 30592926--30592968 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
30592916 ATATGTGTAT
*
30592926 ATATATTTTTT-TATGA
1 ATATTTTTTTTATATGA
30592942 ATATTTTTCTTTATATGA
1 ATATTTTT-TTTATATGA
30592960 ATATTTTTT
1 ATATTTTTT
30592969 ATATTTATAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 7 0.29
17 4 0.17
18 13 0.54
ACGTcount: A:0.28, C:0.02, G:0.05, T:0.65
Consensus pattern (17 bp):
ATATTTTTTTTATATGA
Found at i:30593230 original size:21 final size:20
Alignment explanation
Indices: 30593190--30593232 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
30593180 TTATGTACCT
*
30593190 TTTATTCTTTATTTTTTTTA
1 TTTATTCTTTATTTTGTTTA
30593210 TTTAGTTCTTTCA-TTTGTTTA
1 TTTA-TTCTTT-ATTTTGTTTA
30593231 TT
1 TT
30593233 AATTTGTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 4 0.20
21 15 0.75
22 1 0.05
ACGTcount: A:0.14, C:0.07, G:0.05, T:0.74
Consensus pattern (20 bp):
TTTATTCTTTATTTTGTTTA
Found at i:30593369 original size:15 final size:15
Alignment explanation
Indices: 30593349--30593383 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
30593339 TTTCTATGCC
30593349 ATTGTTATATTTATT
1 ATTGTTATATTTATT
*
30593364 ATTGTTGTATTTATT
1 ATTGTTATATTTATT
30593379 ATTGT
1 ATTGT
30593384 GGCATATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.11, T:0.66
Consensus pattern (15 bp):
ATTGTTATATTTATT
Found at i:30605380 original size:44 final size:43
Alignment explanation
Indices: 30605251--30606104 Score: 332
Period size: 44 Copynumber: 19.7 Consensus size: 43
30605241 CCAATAATCC
* * * **
30605251 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAA-AACCTTGGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCT
* * * * * *
30605295 TATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CGCATCTAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
* *
30605335 TATCTCCCTAAAGTTACAGTGGAGCAGACTAAGTAAGCAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCT
* * * * *
30605379 TATC-CTCCTGAAGTTGTAGT-GAGGCAAACTGAAGATGGAAAATCT
1 TATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGA-AGCAAGTCT
* * * * *
30605424 TATCTCCCTGAAGTTACAGTAGAGCAGA-TTA-AAGCCGATAATCA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGTCT
* * * * **
30605468 TATCTTCCTGAAGTTGCAGTGGAGCGGATTAA-AACCTTGGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCT
* * * * * * *
30605512 TATC-CCTCTGAAGTTACAG-AGAGTAGA-T-CGCATCTAGTCT
1 TATCTCC-CTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
* *
30605552 TATCTCCCTGAAGTTACAGTAGAGCAGACTAAGTAAGCAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCT
* * *
30605596 TATC-CTCCTGAAGTTGCAAT-GAGGCAGACTAAAGATGGCAAATCT
1 TATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGA-AGCAAGTCT
* * * *
30605641 TATCTCCCTGAAGTTGCAGTGGAGTAGA-TTA-AAGCCAATAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGTCT
* * * *
30605685 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAA-AACCTTAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCT
* * * ** * * * *
30605729 TATCTCTCTAAAGTTACAG-AAAGCAGA-T-CGCATCTAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
* *
30605769 TATCTCCCTAAAATTGCAGTGGAGCAGACTAAGTAAGCAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCT
* * * *
30605813 TATC-CTCCTGAAGTTGCAGT-GAGGCCGACTGAAGATGGTAAATCT
1 TATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGA-AGCAAGTCT
* * *
30605858 TATCTCCCTGAAGTTGCAGTGGAGCAGA-TTA-AAGCCGATAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGTCT
* * **
30605902 TATCTCCCTGAAGTTGCAGTGGAGC-GAAATAA-AACCGTGGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAG-ACTAAGAAGC-AAG-TCT
* * * * * * * *
30605946 TATCTCTCTATAAAGTTGCAG-AGAGTAGA-T-CGCATCTAGTCT
1 TATCTC-C-CTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
*
30605988 TATCTCCCTGAAGTTGCAGTGGAACAGACTAAGTAAGCAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCT
* * * * *
30606032 TATC-CTCTTAAAGTTACAGT-GAGGCAGACTGAAGATGGCAAATCT
1 TATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGA-AGCAAGTCT
* *
30606077 TATCTCCCTGAAGTTACAGTGGAACAGA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA
30606105 TTAAAGCCGA
Statistics
Matches: 613, Mismatches: 132, Indels: 129
0.70 0.15 0.15
Matches are distributed among these distances:
40 67 0.11
41 38 0.06
42 26 0.04
43 43 0.07
44 278 0.45
45 138 0.23
46 23 0.04
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (43 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
Found at i:30605633 original size:217 final size:217
Alignment explanation
Indices: 30605244--30606236 Score: 1572
Period size: 217 Copynumber: 4.6 Consensus size: 217
30605234 TCGGTGGCCA
30605244 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
1 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
* *
30605309 TGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTAAAGTTACAGTGGAGCAGACTAAGTAAGCA
66 TGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA
* * *
30605374 AGTCTTATCCTCCTGAAGTTGTAGTGAGGCAAACTGAAGATGGAAAATCTTATCTCCCTGAAGTT
131 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
*
30605439 ACAGTAGAGCAGATTAAAGCCG
196 ACAGTGGAGCAGATTAAAGCCG
* * *
30605461 ATAATCATATCTTCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCCCTCTGAAGT
1 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
* * * *
30605526 TACAGAGAGTAGATCGCATCTAGTCTTATCTCCCTGAAGTTACAGTAGAGCAGACTAAGTAAGCA
66 TGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA
* *
30605591 AGTCTTATCCTCCTGAAGTTGCAATGAGGCAGACTAAAGATGGCAAATCTTATCTCCCTGAAGTT
131 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
* * *
30605656 GCAGTGGAGTAGATTAAAGCCA
196 ACAGTGGAGCAGATTAAAGCCG
* *
30605678 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTCTAAAGT
1 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
* * * *
30605743 TACAGAAAGCAGATCGCATCTAGTCTTATCTCCCTAAAATTGCAGTGGAGCAGACTAAGTAAGCA
66 TGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA
* *
30605808 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCCGACTGAAGATGGTAAATCTTATCTCCCTGAAGTT
131 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
*
30605873 GCAGTGGAGCAGATTAAAGCCG
196 ACAGTGGAGCAGATTAAAGCCG
* * * *
30605895 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGAAATAAAACCGTGGATCTTATCTCTCTATAAA
1 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTC--TGAA
* *
30605960 GTTGCAGAGAGTAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAGTAAG
64 GTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAG
* * *
30606025 CAAGTCTTATCCTCTTAAAGTTACAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAG
129 CAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAG
*
30606090 TTACAGTGGAACAGATTAAAGCCG
194 TTACAGTGGAGCAGATTAAAGCCG
* * * * * *
30606114 ATAATCCTATCTCCCTGAAGTTGTAGTGTAACGAATTAAAATCTTGGATCTTATCTCTATGAAGT
1 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
*
30606179 TGCAGAGAGCAAATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA
66 TGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA
30606237 CTCAAGCTGA
Statistics
Matches: 713, Mismatches: 61, Indels: 4
0.92 0.08 0.01
Matches are distributed among these distances:
217 516 0.72
219 197 0.28
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (217 bp):
ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
TGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA
AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
ACAGTGGAGCAGATTAAAGCCG
Done.