Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53248092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1300000 characters in sequence are not A, C, G, or T
File 99 of 175
Found at i:31559798 original size:20 final size:19
Alignment explanation
Indices: 31559746--31559797 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
31559736 AAAAATATAA
*
31559746 ATTTTGGAATTTTTATAAAT
1 ATTTT-GAATTTTTAAAAAT
*
31559766 ATTTTGAAATTTTAAAAATT
1 ATTTTGAATTTTTAAAAA-T
31559786 ATTTTG-ATTTTT
1 ATTTTGAATTTTT
31559798 TTAATTTTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 16 0.57
20 12 0.43
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.58
Consensus pattern (19 bp):
ATTTTGAATTTTTAAAAAT
Found at i:31567495 original size:29 final size:28
Alignment explanation
Indices: 31567456--31567527 Score: 81
Period size: 31 Copynumber: 2.4 Consensus size: 28
31567446 CAAATATTAC
*
31567456 TTTTTTTTATTTTATTATTTATCAGTTT
1 TTTTTTTTATTTTATTATTTATCAATTT
* *
31567484 TTTTTTTGTATTTTTTCTTATTTCTCAATTT
1 TTTTTTT-TA--TTTTATTATTTATCAATTT
31567515 TTTTTTTATATTT
1 TTTTTTT-TATTT
31567528 GGACTTCGGC
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
28 7 0.19
29 5 0.14
31 25 0.68
ACGTcount: A:0.15, C:0.06, G:0.03, T:0.76
Consensus pattern (28 bp):
TTTTTTTTATTTTATTATTTATCAATTT
Found at i:31567516 original size:31 final size:31
Alignment explanation
Indices: 31567465--31567527 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
31567455 CTTTTTTTTA
* *
31567465 TTTTATTATTTATCAGTTTTTTTTTTGTATT
1 TTTTATTATTTATCAATTTTTTTTTTATATT
* *
31567496 TTTTCTTATTTCTCAATTTTTTTTTTATATT
1 TTTTATTATTTATCAATTTTTTTTTTATATT
31567527 T
1 T
31567528 GGACTTCGGC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.16, C:0.06, G:0.03, T:0.75
Consensus pattern (31 bp):
TTTTATTATTTATCAATTTTTTTTTTATATT
Found at i:31568329 original size:108 final size:107
Alignment explanation
Indices: 31568034--31568363 Score: 465
Period size: 107 Copynumber: 3.1 Consensus size: 107
31568024 ATGACATGGA
* * *
31568034 TTGAAA-TTTAAGAGGATA-TTTGGCTATTTGGTTC-AACGAGAAATCGAAACCCAGCACGTTAG
1 TTGAAATTTTAAAAGGATATTTTAGCTATTTGG-TCGAACGAAAAATCGAAACCCAGCACGTTAG
* *
31568096 GGCACGTTTTCTCGAATTTCCAAAC-TCAAAATATTGCCTTATT
65 GGCACGTTTTCTCGAACTTCTAAACGT-AAAATATTGCCTTATT
* * *
31568139 TTGAAATTTTAGAAGGATATTTTAGCTATTTGGTCGAATGAAAAAATCG-AACCTAGCACGTTAG
1 TTGAAATTTTAAAAGGATATTTTAGCTATTTGGTCGAACG-AAAAATCGAAACCCAGCACGTTAG
* *
31568203 GGCGCGCTTTCTCGAACTTCTAAACGTAAAATATTGCCTTATT
65 GGCACGTTTTCTCGAACTTCTAAACGTAAAATATTGCCTTATT
31568246 TTGAAATTTTAAAAGGATATTTTTAGCTATTTGGTCGAACGAAAAATCGAAACCCAGCACGTTAG
1 TTGAAATTTTAAAAGGATA-TTTTAGCTATTTGGTCGAACGAAAAATCGAAACCCAGCACGTTAG
* *
31568311 GGCACGTTTTCTCAAACTT-TCAAACGCAAAATATTGCCTTATT
65 GGCACGTTTTCTCGAACTTCT-AAACGTAAAATATTGCCTTATT
31568354 TTGAAATTTT
1 TTGAAATTTT
31568364 TATTTGGATA
Statistics
Matches: 200, Mismatches: 17, Indels: 13
0.87 0.07 0.06
Matches are distributed among these distances:
105 6 0.03
106 12 0.06
107 93 0.47
108 89 0.44
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (107 bp):
TTGAAATTTTAAAAGGATATTTTAGCTATTTGGTCGAACGAAAAATCGAAACCCAGCACGTTAGG
GCACGTTTTCTCGAACTTCTAAACGTAAAATATTGCCTTATT
Found at i:31568614 original size:15 final size:15
Alignment explanation
Indices: 31568584--31568617 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
31568574 GATTAATGAT
31568584 ATAAATAACAATATA
1 ATAAATAACAATATA
31568599 ATAAA-AACAATAATA
1 ATAAATAACAAT-ATA
31568614 ATAA
1 ATAA
31568618 TCAACGATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.24
Consensus pattern (15 bp):
ATAAATAACAATATA
Found at i:31568778 original size:19 final size:19
Alignment explanation
Indices: 31568741--31568787 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
31568731 AAGTCGATAC
31568741 TAAAATAATAAGCAAATAAA
1 TAAAATAA-AAGCAAATAAA
31568761 TAAAATAAAATG-AAATAAA
1 TAAAATAAAA-GCAAATAAA
31568780 T-AAATAAA
1 TAAAATAAA
31568788 TAAAATGTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 7 0.27
19 10 0.38
20 9 0.35
ACGTcount: A:0.72, C:0.02, G:0.04, T:0.21
Consensus pattern (19 bp):
TAAAATAAAAGCAAATAAA
Found at i:31569878 original size:15 final size:16
Alignment explanation
Indices: 31569858--31569891 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
31569848 TTGTTTCGAC
31569858 TTTCTTTTT-TTGTTT
1 TTTCTTTTTGTTGTTT
31569873 TTTCTTTTTGTTGTTT
1 TTTCTTTTTGTTGTTT
31569889 TTT
1 TTT
31569892 GTTTGCGTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.00, C:0.06, G:0.09, T:0.85
Consensus pattern (16 bp):
TTTCTTTTTGTTGTTT
Found at i:31578643 original size:13 final size:13
Alignment explanation
Indices: 31578627--31578666 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
31578617 TTTAAACTAA
*
31578627 ACTTTTCAAAAGT
1 ACTTTTCAAAAGC
* *
31578640 ACTTTTCTATAGC
1 ACTTTTCAAAAGC
31578653 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
31578666 A
1 A
31578667 TTGCCAAATT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.35, C:0.20, G:0.07, T:0.38
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:31579764 original size:26 final size:26
Alignment explanation
Indices: 31579735--31579786 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
31579725 GTAATAGGCG
31579735 TAAGTGAAGGAGCAAGACTGAGTACT
1 TAAGTGAAGGAGCAAGACTGAGTACT
31579761 TAAGTGAAGGAGCAAGACTGAGTACT
1 TAAGTGAAGGAGCAAGACTGAGTACT
31579787 CTAGAATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.12, G:0.31, T:0.19
Consensus pattern (26 bp):
TAAGTGAAGGAGCAAGACTGAGTACT
Found at i:31583094 original size:16 final size:17
Alignment explanation
Indices: 31583067--31583104 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
31583057 CTAAAAATAG
*
31583067 ATTGAGAAAATTATTTA
1 ATTGAGAAAATTAATTA
31583084 ATTGA-AAAATTAATTA
1 ATTGAGAAAATTAATTA
31583100 ATTGA
1 ATTGA
31583105 TTAAATAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 15 0.75
17 5 0.25
ACGTcount: A:0.50, C:0.00, G:0.11, T:0.39
Consensus pattern (17 bp):
ATTGAGAAAATTAATTA
Found at i:31589966 original size:4 final size:4
Alignment explanation
Indices: 31589950--31589983 Score: 61
Period size: 4 Copynumber: 8.8 Consensus size: 4
31589940 TGTGGTGAGG
31589950 TTTA TTT- TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
31589984 TAATACTTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 3 0.10
4 26 0.90
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (4 bp):
TTTA
Found at i:31590606 original size:6 final size:6
Alignment explanation
Indices: 31590588--31590625 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
31590578 GAAAAAAATT
*
31590588 AAAA-G AAAA-G AAAAGG AAAAGG AAAAGG AAAAAG AAAA
1 AAAAGG AAAAGG AAAAGG AAAAGG AAAAGG AAAAGG AAAA
31590626 AGAGAAAAGC
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
5 9 0.29
6 22 0.71
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (6 bp):
AAAAGG
Found at i:31590626 original size:6 final size:6
Alignment explanation
Indices: 31590588--31590634 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
31590578 GAAAAAAATT
* * *
31590588 AAAAG- AAAAGA AAAGGA AAAGGA AAAGGA AAAAGA AAAAGA GAAAAG
1 AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA -AAAAG
31590635 CGAGAGAGAA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
5 5 0.13
6 28 0.74
7 5 0.13
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:31590701 original size:33 final size:32
Alignment explanation
Indices: 31590664--31590784 Score: 147
Period size: 33 Copynumber: 3.7 Consensus size: 32
31590654 AATATGAATG
31590664 AAACGAGTGCAAAAGAAAGAGAGCTTGAAAAGA
1 AAACGAGTG-AAAAGAAAGAGAGCTTGAAAAGA
31590697 AAACGAGTGAAAAAGAAAGAGAGCTTGAAAAGA
1 AAACGAGTG-AAAAGAAAGAGAGCTTGAAAAGA
** *
31590730 AAATAAGTGAAAGAGAGAGAGAGCTTGAAAA-A
1 AAACGAGTGAAA-AGAAAGAGAGCTTGAAAAGA
*
31590762 GAAACGTGTGAAGAAG-AAGAGAG
1 -AAACGAGTGAA-AAGAAAGAGAG
31590785 TGCTCAAACA
Statistics
Matches: 77, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
32 10 0.13
33 66 0.86
34 1 0.01
ACGTcount: A:0.55, C:0.06, G:0.30, T:0.10
Consensus pattern (32 bp):
AAACGAGTGAAAAGAAAGAGAGCTTGAAAAGA
Found at i:31590712 original size:16 final size:15
Alignment explanation
Indices: 31590664--31590732 Score: 52
Period size: 17 Copynumber: 4.2 Consensus size: 15
31590654 AATATGAATG
31590664 AAACGAGTGCAAAAGA
1 AAACGAGTG-AAAAGA
31590680 AAGA-GAGCTTGAAAAGA
1 AA-ACGAG--TGAAAAGA
31590697 AAACGAGTGAAAAAGA
1 AAACGAGTG-AAAAGA
31590713 AAGA-GAGCTTGAAAAGA
1 AA-ACGAG--TGAAAAGA
31590730 AAA
1 AAA
31590733 TAAGTGAAAG
Statistics
Matches: 45, Mismatches: 0, Indels: 16
0.74 0.00 0.26
Matches are distributed among these distances:
15 2 0.04
16 18 0.40
17 21 0.47
18 4 0.09
ACGTcount: A:0.58, C:0.07, G:0.26, T:0.09
Consensus pattern (15 bp):
AAACGAGTGAAAAGA
Found at i:31602080 original size:30 final size:30
Alignment explanation
Indices: 31602044--31602103 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
31602034 CGAAATATCG
*
31602044 GTCATAAGCCCAATCCTATCTGCCCCATCA
1 GTCATAAACCCAATCCTATCTGCCCCATCA
* *
31602074 GTCATAAACTCAATCTTATCTGCCCCATCA
1 GTCATAAACCCAATCCTATCTGCCCCATCA
31602104 TTATCTGTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.37, G:0.08, T:0.27
Consensus pattern (30 bp):
GTCATAAACCCAATCCTATCTGCCCCATCA
Found at i:31607739 original size:27 final size:27
Alignment explanation
Indices: 31607709--31607760 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
31607699 TATTGAAGGA
31607709 GTTAGTACTGATTTATTTATTTATTGG
1 GTTAGTACTGATTTATTTATTTATTGG
31607736 GTTAGTACTGATTTATTTATTTATT
1 GTTAGTACTGATTTATTTATTTATT
31607761 TATTTTTATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.23, C:0.04, G:0.15, T:0.58
Consensus pattern (27 bp):
GTTAGTACTGATTTATTTATTTATTGG
Found at i:31610936 original size:17 final size:17
Alignment explanation
Indices: 31610914--31610957 Score: 63
Period size: 16 Copynumber: 2.6 Consensus size: 17
31610904 CCTTTAGAAC
*
31610914 TTTTTTTAGAATTTTTA
1 TTTTTTTAGAATTTATA
31610931 TTTTTTTA-AATTTATA
1 TTTTTTTAGAATTTATA
*
31610947 ATTTTTTAGAA
1 TTTTTTTAGAA
31610958 AATATAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 14 0.58
17 10 0.42
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.66
Consensus pattern (17 bp):
TTTTTTTAGAATTTATA
Found at i:31611991 original size:26 final size:27
Alignment explanation
Indices: 31611939--31611992 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
31611929 AAGTAAAAAC
* **
31611939 AGAAACGTTAAAAGAAATTTTTTTTAT
1 AGAAACATTAAAAGAAATTTTAATTAT
31611966 AGAAACATTAAAAG-AATTTTAATTAT
1 AGAAACATTAAAAGAAATTTTAATTAT
31611992 A
1 A
31611993 TATGATCTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 11 0.46
27 13 0.54
ACGTcount: A:0.50, C:0.04, G:0.09, T:0.37
Consensus pattern (27 bp):
AGAAACATTAAAAGAAATTTTAATTAT
Found at i:31616651 original size:21 final size:22
Alignment explanation
Indices: 31616625--31616671 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
31616615 CTCTGCTCAA
*
31616625 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
31616646 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
31616668 ACTC
1 ACTC
31616672 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:31621258 original size:14 final size:13
Alignment explanation
Indices: 31621237--31621276 Score: 55
Period size: 14 Copynumber: 3.1 Consensus size: 13
31621227 AAATTATATC
*
31621237 AAATTAAATTATA
1 AAATTAAATCATA
31621250 AATATTAAATCATA
1 AA-ATTAAATCATA
31621264 AAATTAAA-CATA
1 AAATTAAATCATA
31621276 A
1 A
31621277 TAGAGGGGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
12 5 0.20
13 8 0.32
14 12 0.48
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (13 bp):
AAATTAAATCATA
Found at i:31624989 original size:398 final size:399
Alignment explanation
Indices: 31624070--31625083 Score: 1653
Period size: 398 Copynumber: 2.6 Consensus size: 399
31624060 AAAATCAAGA
31624070 GGAAGAGATAGCAGCTCC-ACACAAGAGCATGATGGGGAAATAGGTAAGTTGA-TTTT-TT-TTT
1 GGAAGAGATAGCAGCTCCAACACAAGAGCATGATGGGGAAATAGGTAAGTTGATTTTTCTTCTTT
*
31624131 ACATAACCTTAACATGGGGATTGTGTCTAAATGAGAGACATGGGGACTCTCATTACAACTTACTC
66 ACATAACCTTAACATGGGGATTGTGTCTAAATGAGAGACATGGGGACTCTCATTACAACTTGCTC
* * *
31624196 TCTCATTTTGATAATGTTTGATAGATATTTTCCAAACCAAATTCACTATCTAATATTACTTGTTA
131 TCTCATTTTGATAATGTTCGTTAGATATTTTCCAAACCAAATTCACTATCTAATATTACTTATTA
* *
31624261 GATTTAAGTTATTTAAATTTCTGTAGAGAACTTAGATCAGCTCTGGGATATGGAGGATGATCAGT
196 GATTTAAGTTATTTAAATTTTTGTAGAGAACTTAGATCAGCTCTAGGATATGGAGGATGATCAGT
*
31624326 TAGGGCATGATAACCCAATGCAGCAACAGGATCACCAGTTGGGGCATGATGACCCCATGAAGCAA
261 TAGGGCATGATAACCCAATGCAGCAACAGGATCACCAGTTGGAGCATGATGACCCCATGAAGCAA
*
31624391 CAGCAACAACAACAACAGATGGATCATGAAGATCCGTTGGGGCATGATGACCCCATGAAGCAAGA
326 CAGCAACAACAACAACAGATGGATCATGAAGATCCATTGGGGCATGATGACCCCATGAAGCAAGA
31624456 GCAGCTGAT
391 GCAGCTGAT
* *
31624465 GGAAGAGATAGCAGCTCCAACACAAGAGCATGATGGAGAAACAGGTAAGTTGATTTTTCTTCTTT
1 GGAAGAGATAGCAGCTCCAACACAAGAGCATGATGGGGAAATAGGTAAGTTGATTTTTCTTCTTT
*
31624530 ACATAACCTTAACATGGGGATTGTGTCTAAATAAGAGACATGGGGACTCTCATTACAACTTGCTC
66 ACATAACCTTAACATGGGGATTGTGTCTAAATGAGAGACATGGGGACTCTCATTACAACTTGCTC
* *
31624595 TCTCATTTTGATAATGTTCGTTAGATATTTTCTAAACCAAATTTACTATCTAATATTACTTATTA
131 TCTCATTTTGATAATGTTCGTTAGATATTTTCCAAACCAAATTCACTATCTAATATTACTTATTA
* *
31624660 GATTTAAGTTATTTAAATTTTTGTAGAGAACTTATATCAGTTCTAGGATATGGAGGATGATCAGT
196 GATTTAAGTTATTTAAATTTTTGTAGAGAACTTAGATCAGCTCTAGGATATGGAGGATGATCAGT
* *
31624725 TGGGGCATGATAACCCAATGCAGCAACAGGATCATCAGTT-GAGCATGATGACCCCATGAAGC-A
261 TAGGGCATGATAACCCAATGCAGCAACAGGATCACCAGTTGGAGCATGATGACCCCATGAAGCAA
** * * * * *
31624788 GTGACAACAACAACAACATATGGATCATGATGATTCATTGGGGCATGATGACCCCATGAAGTAGG
326 CAG-CAACAACAACAACAGATGGATCATGAAGATCCATTGGGGCATGATGACCCCATGAAGCAAG
*
31624853 AGCAGTTGAT
390 AGCAGCTGAT
* *
31624863 GGAAGAAATAACAGCTCCAACACAAGAGCATGATGGGGAAATAGGTAAGTTGATTTTTCTTCTTT
1 GGAAGAGATAGCAGCTCCAACACAAGAGCATGATGGGGAAATAGGTAAGTTGATTTTTCTTCTTT
* * * * * *
31624928 ACATAACCTTAACAAGGGGATTATGTCTTAATGAGAGACATGGGGACTCTTAATACAACTTGCTT
66 ACATAACCTTAACATGGGGATTGTGTCTAAATGAGAGACATGGGGACTCTCATTACAACTTGCTC
* * *
31624993 TCTCATTTTGATAATGTTCGTTAGCTATTTTCCAAACCGAATTCATTATCTAATATTACTTATTA
131 TCTCATTTTGATAATGTTCGTTAGATATTTTCCAAACCAAATTCACTATCTAATATTACTTATTA
31625058 GATTTAAGTTATTTAAATTTTTGTAG
196 GATTTAAGTTATTTAAATTTTTGTAG
31625084 TTTACAAACT
Statistics
Matches: 573, Mismatches: 41, Indels: 7
0.92 0.07 0.01
Matches are distributed among these distances:
395 18 0.03
396 32 0.06
397 6 0.01
398 292 0.51
399 225 0.39
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.30
Consensus pattern (399 bp):
GGAAGAGATAGCAGCTCCAACACAAGAGCATGATGGGGAAATAGGTAAGTTGATTTTTCTTCTTT
ACATAACCTTAACATGGGGATTGTGTCTAAATGAGAGACATGGGGACTCTCATTACAACTTGCTC
TCTCATTTTGATAATGTTCGTTAGATATTTTCCAAACCAAATTCACTATCTAATATTACTTATTA
GATTTAAGTTATTTAAATTTTTGTAGAGAACTTAGATCAGCTCTAGGATATGGAGGATGATCAGT
TAGGGCATGATAACCCAATGCAGCAACAGGATCACCAGTTGGAGCATGATGACCCCATGAAGCAA
CAGCAACAACAACAACAGATGGATCATGAAGATCCATTGGGGCATGATGACCCCATGAAGCAAGA
GCAGCTGAT
Found at i:31631535 original size:72 final size:72
Alignment explanation
Indices: 31631418--31631673 Score: 503
Period size: 72 Copynumber: 3.6 Consensus size: 72
31631408 ACAACTTGAC
*
31631418 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
31631483 ACTAACA
66 ACTAACA
31631490 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
31631555 ACTAACA
66 ACTAACA
31631562 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
31631627 ACTAACA
66 ACTAACA
31631634 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
31631674 AATAATAATA
Statistics
Matches: 183, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 183 1.00
ACGTcount: A:0.42, C:0.24, G:0.06, T:0.27
Consensus pattern (72 bp):
AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
ACTAACA
Found at i:31631682 original size:3 final size:3
Alignment explanation
Indices: 31631674--31631726 Score: 90
Period size: 3 Copynumber: 17.7 Consensus size: 3
31631664 ATTACATCCA
31631674 AAT AAT AAT AAT AAT AAT AAT -AT AAAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT
31631719 AAT AAT AA
1 AAT AAT AA
31631727 AACATGTGAT
Statistics
Matches: 48, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
2 2 0.04
3 44 0.92
4 2 0.04
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:31633204 original size:352 final size:352
Alignment explanation
Indices: 31632560--31633263 Score: 1399
Period size: 352 Copynumber: 2.0 Consensus size: 352
31632550 GGCAAAGTTT
31632560 CTCTGACTTAGAAATATCCCATTTTGTGCTTGAGTCACCTCCATTCCAAGGAAATAAGACATTTC
1 CTCTGACTTAGAAATATCCCATTTTGTGCTTGAGTCACCTCCATTCCAAGGAAATAAGACATTTC
*
31632625 CCCTAGATCAGACATTTCAAATACTTCTTGCATCTTGGTCTTGAAATCGACCAGCACTGCTCGAT
66 CCCTAGATCAGACATTTCAAATACTTCTTGCATCTAGGTCTTGAAATCGACCAGCACTGCTCGAT
31632690 CTCCTCCTGTCACCAGCAGGTCATCAACATATAGGGATACAATGAGCTGTGTTTGTGTCCCTTGC
131 CTCCTCCTGTCACCAGCAGGTCATCAACATATAGGGATACAATGAGCTGTGTTTGTGTCCCTTGC
31632755 TTCTTGACATACAGTGTTGGCTCACTCTTGCTTCGATCGAATCCCAAATTAGTCAAGTAGCCATC
196 TTCTTGACATACAGTGTTGGCTCACTCTTGCTTCGATCGAATCCCAAATTAGTCAAGTAGCCATC
31632820 GATTCTGCTGTACCAGGCCCTTGGAGCCTGTTTTAAGCCATATAGGGCCTTCTTCAGTTTGTAGA
261 GATTCTGCTGTACCAGGCCCTTGGAGCCTGTTTTAAGCCATATAGGGCCTTCTTCAGTTTGTAGA
31632885 CCATATGCTCTCTGCCAGCTATCTCAA
326 CCATATGCTCTCTGCCAGCTATCTCAA
31632912 CTCTGACTTAGAAATATCCCATTTTGTGCTTGAGTCACCTCCATTCCAAGGAAATAAGACATTTC
1 CTCTGACTTAGAAATATCCCATTTTGTGCTTGAGTCACCTCCATTCCAAGGAAATAAGACATTTC
31632977 CCCTAGATCAGACATTTCAAATACTTCTTGCATCTAGGTCTTGAAATCGACCAGCACTGCTCGAT
66 CCCTAGATCAGACATTTCAAATACTTCTTGCATCTAGGTCTTGAAATCGACCAGCACTGCTCGAT
31633042 CTCCTCCTGTCACCAGCAGGTCATCAACATATAGGGATACAATGAGCTGTGTTTGTGTCCCTTGC
131 CTCCTCCTGTCACCAGCAGGTCATCAACATATAGGGATACAATGAGCTGTGTTTGTGTCCCTTGC
31633107 TTCTTGACATACAGTGTTGGCTCACTCTTGCTTCGATCGAATCCCAAATTAGTCAAGTAGCCATC
196 TTCTTGACATACAGTGTTGGCTCACTCTTGCTTCGATCGAATCCCAAATTAGTCAAGTAGCCATC
31633172 GATTCTGCTGTACCAGGCCCTTGGAGCCTGTTTTAAGCCATATAGGGCCTTCTTCAGTTTGTAGA
261 GATTCTGCTGTACCAGGCCCTTGGAGCCTGTTTTAAGCCATATAGGGCCTTCTTCAGTTTGTAGA
31633237 CCATATGCTCTCTGCCAGCTATCTCAA
326 CCATATGCTCTCTGCCAGCTATCTCAA
31633264 ACCCTTGTGG
Statistics
Matches: 351, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
352 351 1.00
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (352 bp):
CTCTGACTTAGAAATATCCCATTTTGTGCTTGAGTCACCTCCATTCCAAGGAAATAAGACATTTC
CCCTAGATCAGACATTTCAAATACTTCTTGCATCTAGGTCTTGAAATCGACCAGCACTGCTCGAT
CTCCTCCTGTCACCAGCAGGTCATCAACATATAGGGATACAATGAGCTGTGTTTGTGTCCCTTGC
TTCTTGACATACAGTGTTGGCTCACTCTTGCTTCGATCGAATCCCAAATTAGTCAAGTAGCCATC
GATTCTGCTGTACCAGGCCCTTGGAGCCTGTTTTAAGCCATATAGGGCCTTCTTCAGTTTGTAGA
CCATATGCTCTCTGCCAGCTATCTCAA
Found at i:31636414 original size:72 final size:72
Alignment explanation
Indices: 31636297--31636480 Score: 359
Period size: 72 Copynumber: 2.6 Consensus size: 72
31636287 ACAACTTGAC
*
31636297 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
31636362 ACTAACA
66 ACTAACA
31636369 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
31636434 ACTAACA
66 ACTAACA
31636441 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
31636481 AATAATAATA
Statistics
Matches: 111, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 111 1.00
ACGTcount: A:0.42, C:0.24, G:0.07, T:0.28
Consensus pattern (72 bp):
AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
ACTAACA
Found at i:31636489 original size:3 final size:3
Alignment explanation
Indices: 31636481--31636527 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
31636471 ATTACATCCA
31636481 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
31636528 AACATGTGAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:31642963 original size:21 final size:21
Alignment explanation
Indices: 31642937--31642982 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
31642927 ACTTAACAAG
*
31642937 CAAATGTCTCTAAAATGATAA
1 CAAATGTCTCTAAAATAATAA
*
31642958 CAAATGTCTTTAAAATAATAA
1 CAAATGTCTCTAAAATAATAA
31642979 CAAA
1 CAAA
31642983 ATTAACAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.52, C:0.13, G:0.07, T:0.28
Consensus pattern (21 bp):
CAAATGTCTCTAAAATAATAA
Found at i:31654397 original size:29 final size:28
Alignment explanation
Indices: 31654338--31654399 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 28
31654328 TAGAATAATC
* * *
31654338 AATTTATAATTTTTTAATATATAATGTT
1 AATTTATAATTTTTTAATAAAAAATGAT
31654366 AATTTATTAATTTTTTGAATAAAAAAT-AT
1 AATTTA-TAATTTTTT-AATAAAAAATGAT
31654395 AATTT
1 AATTT
31654400 GACTCTTAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
28 6 0.21
29 15 0.52
30 8 0.28
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (28 bp):
AATTTATAATTTTTTAATAAAAAATGAT
Found at i:31655936 original size:14 final size:14
Alignment explanation
Indices: 31655917--31655952 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
31655907 CTTAATTACA
31655917 AAAGAAAATTAAAT
1 AAAGAAAATTAAAT
31655931 AAAGAAAATTAAAT
1 AAAGAAAATTAAAT
*
31655945 AGAGAAAA
1 AAAGAAAA
31655953 AAAGCCTGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.72, C:0.00, G:0.11, T:0.17
Consensus pattern (14 bp):
AAAGAAAATTAAAT
Found at i:31656319 original size:17 final size:17
Alignment explanation
Indices: 31656297--31656329 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
31656287 TGAGTTTGTT
31656297 TAAAT-ATTATTAAATAA
1 TAAATAATTA-TAAATAA
31656314 TAAATAATTATAAATA
1 TAAATAATTATAAATA
31656330 CATACTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
TAAATAATTATAAATAA
Found at i:31656900 original size:13 final size:12
Alignment explanation
Indices: 31656880--31656919 Score: 53
Period size: 13 Copynumber: 3.2 Consensus size: 12
31656870 TTAATGTATA
31656880 ATTTTAATATTT
1 ATTTTAATATTT
31656892 ATTTCTAATATTT
1 ATTT-TAATATTT
*
31656905 ATTTATAATAATT
1 ATTT-TAATATTT
31656918 AT
1 AT
31656920 AATTAAGTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 4 0.16
13 21 0.84
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (12 bp):
ATTTTAATATTT
Found at i:31657716 original size:17 final size:17
Alignment explanation
Indices: 31657694--31657726 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
31657684 ATATTTAATA
31657694 TATATTTGATTAAAAAG
1 TATATTTGATTAAAAAG
31657711 TATATTTGATTAAAAA
1 TATATTTGATTAAAAA
31657727 TAAAACATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.42
Consensus pattern (17 bp):
TATATTTGATTAAAAAG
Found at i:31663063 original size:20 final size:20
Alignment explanation
Indices: 31663040--31663090 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
31663030 AATCAAGTGC
31663040 AAATGATTTTAACCAAGTCA
1 AAATGATTTTAACCAAGTCA
** * *
31663060 AAATGATTCAAATCAAGTTA
1 AAATGATTTTAACCAAGTCA
*
31663080 AAATCATTTTA
1 AAATGATTTTA
31663091 CAATGATTTT
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.47, C:0.12, G:0.08, T:0.33
Consensus pattern (20 bp):
AAATGATTTTAACCAAGTCA
Found at i:31671094 original size:20 final size:20
Alignment explanation
Indices: 31671071--31671122 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
31671061 AATCAAGTGC
*
31671071 AAATGATTTTAACCAAGTCA
1 AAATAATTTTAACCAAGTCA
* * *
31671091 AAATAATTTCAATCAAGTTA
1 AAATAATTTTAACCAAGTCA
*
31671111 AAATCATTTTAA
1 AAATAATTTTAA
31671123 AATGATTTTC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.48, C:0.12, G:0.06, T:0.35
Consensus pattern (20 bp):
AAATAATTTTAACCAAGTCA
Found at i:31683440 original size:87 final size:87
Alignment explanation
Indices: 31683266--31683429 Score: 242
Period size: 87 Copynumber: 1.9 Consensus size: 87
31683256 AAATTTAAAT
*
31683266 TCGGTGAATTCATCAAGTCTGTCTCAATATGACCACCCAAACTCTGGGATATGAACTCATTAAGA
1 TCGGTGAATTCATCAAGTCTGTCTCAATAGGACCACCCAAACTCTGGGATATGAACTCATTAAGA
31683331 GTAATAAACTCAACCTCACATG
66 GTAATAAACTCAACCTCACATG
* * * * **
31683353 TCGGTGAATTCGTCAAGTCTGTCTCAATAGGACCACCCAATC-CTGTGATATGAATTTGTTAAGA
1 TCGGTGAATTCATCAAGTCTGTCTCAATAGGACCACCCAAACTCTGGGATATGAACTCATTAAGA
*
31683417 GTGAT-AACTCAAC
66 GTAATAAACTCAAC
31683430 ATTATACATG
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
85 8 0.12
86 22 0.32
87 39 0.57
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (87 bp):
TCGGTGAATTCATCAAGTCTGTCTCAATAGGACCACCCAAACTCTGGGATATGAACTCATTAAGA
GTAATAAACTCAACCTCACATG
Found at i:31688432 original size:44 final size:43
Alignment explanation
Indices: 31688379--31688468 Score: 128
Period size: 44 Copynumber: 2.1 Consensus size: 43
31688369 TTGCTTTAAC
*
31688379 TTTCCCACTTAAACTCTT-TTAAGTATAAGTTATTTTAATATTTG
1 TTTCCCACTTAAAATCTTATT-AGTATAAGTTATTTTAATA-TTG
* *
31688423 TTTCTCACTTAAAATCTTATTAGTGTAAGTTATTTTAATATTG
1 TTTCCCACTTAAAATCTTATTAGTATAAGTTATTTTAATATTG
31688466 TTT
1 TTT
31688469 GACCTACAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
43 6 0.14
44 34 0.81
45 2 0.05
ACGTcount: A:0.29, C:0.11, G:0.08, T:0.52
Consensus pattern (43 bp):
TTTCCCACTTAAAATCTTATTAGTATAAGTTATTTTAATATTG
Found at i:31692993 original size:24 final size:24
Alignment explanation
Indices: 31692966--31693015 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
31692956 CGGGCTTAAG
31692966 GACTAAGTTGTGAAAATGTTAAAA
1 GACTAAGTTGTGAAAATGTTAAAA
31692990 GACTAAGTTGTGAAAATGTTAAAA
1 GACTAAGTTGTGAAAATGTTAAAA
31693014 GA
1 GA
31693016 GATGTAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.46, C:0.04, G:0.22, T:0.28
Consensus pattern (24 bp):
GACTAAGTTGTGAAAATGTTAAAA
Found at i:31704753 original size:17 final size:17
Alignment explanation
Indices: 31704731--31704766 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
31704721 CGATTGCATG
31704731 TTTCTATTGCTGTTTAT
1 TTTCTATTGCTGTTTAT
31704748 TTTCTATTGCTGTTTAT
1 TTTCTATTGCTGTTTAT
31704765 TT
1 TT
31704767 CCCTTTGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.11, C:0.11, G:0.11, T:0.67
Consensus pattern (17 bp):
TTTCTATTGCTGTTTAT
Found at i:31705232 original size:32 final size:34
Alignment explanation
Indices: 31705169--31705232 Score: 96
Period size: 33 Copynumber: 1.9 Consensus size: 34
31705159 TCTAATAATT
* *
31705169 TCACTATTATAAAACTATTTTCCTTAAAAGAATG
1 TCACTATTATAAAACCATTCTCCTTAAAAGAATG
31705203 TCAC-ATTATAAAACCATTCT-CTTAAAAGAA
1 TCACTATTATAAAACCATTCTCCTTAAAAGAA
31705233 AATCGAAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 10 0.36
33 14 0.50
34 4 0.14
ACGTcount: A:0.44, C:0.17, G:0.05, T:0.34
Consensus pattern (34 bp):
TCACTATTATAAAACCATTCTCCTTAAAAGAATG
Found at i:31706118 original size:22 final size:22
Alignment explanation
Indices: 31706077--31706175 Score: 91
Period size: 23 Copynumber: 4.5 Consensus size: 22
31706067 GAAGATGAAA
31706077 CTGGAAATTG--TTGCATTTGTT
1 CTGGAAATTGTTTTG-ATTTGTT
* *
31706098 -TTGATATTGTTCTTGATTTGTT
1 CTGGAAATTGTT-TTGATTTGTT
31706120 CTGGAAATTGTTTTGA-TTGTCT
1 CTGGAAATTGTTTTGATTTGT-T
31706142 GCTGGAAATTGTTTTGA-TTGTCT
1 -CTGGAAATTGTTTTGATTTGT-T
31706165 GCTGGAAATTG
1 -CTGGAAATTG
31706176 AATTTGTTTA
Statistics
Matches: 68, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
20 7 0.10
21 4 0.06
22 12 0.18
23 45 0.66
ACGTcount: A:0.18, C:0.08, G:0.24, T:0.49
Consensus pattern (22 bp):
CTGGAAATTGTTTTGATTTGTT
Found at i:31706184 original size:29 final size:23
Alignment explanation
Indices: 31706103--31706175 Score: 114
Period size: 23 Copynumber: 3.2 Consensus size: 23
31706093 TTGTTTTGAT
31706103 ATTGTTCTTGATTTGT-T-CTGGAA
1 ATTGTT-TTGA-TTGTCTGCTGGAA
31706126 ATTGTTTTGATTGTCTGCTGGAA
1 ATTGTTTTGATTGTCTGCTGGAA
31706149 ATTGTTTTGATTGTCTGCTGGAA
1 ATTGTTTTGATTGTCTGCTGGAA
31706172 ATTG
1 ATTG
31706176 AATTTGTTTA
Statistics
Matches: 48, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
21 4 0.08
22 5 0.10
23 39 0.81
ACGTcount: A:0.18, C:0.08, G:0.25, T:0.49
Consensus pattern (23 bp):
ATTGTTTTGATTGTCTGCTGGAA
Found at i:31710561 original size:92 final size:91
Alignment explanation
Indices: 31710404--31710612 Score: 278
Period size: 92 Copynumber: 2.3 Consensus size: 91
31710394 TTGATTTTAG
* * *
31710404 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATAACTATTAAATTAT
* *
31710469 ATTTAAT-ATTAATTATTTTAAATTGTA
65 ATGTAATAATT-ATTATTTTAAATTATA
*
31710496 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATT-TAATATTAATTATTAAATTA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTAT-ATA-TAACTATTAAATTA
31710560 TATGTAATAATTATTATTTTAAATTATA
64 TATGTAATAATTATTATTTTAAATTATA
* * * *
31710588 CAAATTCATAAAATATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
31710613 GTTATAATTA
Statistics
Matches: 104, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
90 1 0.01
91 29 0.28
92 71 0.68
93 3 0.03
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATAACTATTAAATTATA
TGTAATAATTATTATTTTAAATTATA
Found at i:31710575 original size:24 final size:25
Alignment explanation
Indices: 31710540--31710587 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
31710530 TTATGAAATT
31710540 TAATATTAATTA-TTAAATTATATG
1 TAATATTAATTATTTAAATTATATG
31710564 TAATAATT-ATTATTTTAAATTATA
1 TAAT-ATTAATTA-TTTAAATTATA
31710588 CAAATTCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 8 0.38
25 3 0.14
26 10 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (25 bp):
TAATATTAATTATTTAAATTATATG
Found at i:31710767 original size:61 final size:59
Alignment explanation
Indices: 31710702--31710890 Score: 154
Period size: 61 Copynumber: 3.1 Consensus size: 59
31710692 TATAGTATCA
31710702 TATATATTAGCATGTTAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 TATATATTAG-AT-TTAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
** * * * * * * * *
31710763 TATATATTTTAATTA-T-AATAT-ATTTAATAATAATTATGTTAATTTA-TATTTTA-CAGTAT
1 TATATATTAGATTTAGTAAAT-TCATATAAGAAT-ATTA-ATT-ATTAAGAATTTTATTA-AAT
* *
31710822 CATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTAATAAGAATTTTATTAAAT
1 TATATATTA-GATTT-AGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
31710883 TATATATT
1 TATATATT
31710891 TTAATTATAA
Statistics
Matches: 93, Mismatches: 23, Indels: 24
0.66 0.16 0.17
Matches are distributed among these distances:
57 11 0.12
58 7 0.08
59 20 0.22
60 11 0.12
61 26 0.28
62 7 0.08
63 11 0.12
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.48
Consensus pattern (59 bp):
TATATATTAGATTTAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
Found at i:31710790 original size:15 final size:15
Alignment explanation
Indices: 31710755--31710806 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
31710745 TTAAGAATTT
*
31710755 TATTAAATTAT-ATA
1 TATTTAATTATAATA
31710769 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
31710783 TATTTAATAATAAT-
1 TATTTAATTATAATA
31710797 TATGTTAATT
1 TAT-TTAATT
31710807 TATATTTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:31710874 original size:120 final size:122
Alignment explanation
Indices: 31710628--31710927 Score: 452
Period size: 120 Copynumber: 2.5 Consensus size: 122
31710618 AATTATTTTA
* * *
31710628 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTTTCATT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT-AAATTTTCATT
* *
31710692 TATAGTATCATATATATTAGCATGTTAGTAAATTCATATAAGAATATTAATTATTAAG
65 TACAGTATCATATATATTAGCATGTTAGTAAATTCATATAAGAATATTAATTAATAAG
31710750 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT-AATTTAT-ATT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTT-TCA-T
31710813 TTACAGTATC--ATATATTATG-AT-TTGAGTAAATTCATATAAGAATATTAATTAATAAG
64 TTACAGTATCATATATATTA-GCATGTT-AGTAAATTCATATAAGAATATTAATTAATAAG
31710870 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATG-TTAAAT
31710928 ATGATTAAAT
Statistics
Matches: 166, Mismatches: 5, Indels: 14
0.90 0.03 0.08
Matches are distributed among these distances:
119 2 0.01
120 92 0.55
121 9 0.05
122 61 0.37
123 2 0.01
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (122 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTTTCATTT
ACAGTATCATATATATTAGCATGTTAGTAAATTCATATAAGAATATTAATTAATAAG
Found at i:31710905 original size:16 final size:16
Alignment explanation
Indices: 31710884--31710925 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
31710874 TTATTAAATT
*
31710884 ATATATTTTAATTATA
1 ATATATTTTAATAATA
31710900 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
31710915 AT-TATGTTTAA
1 ATATAT-TTTAA
31710926 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:31710910 original size:15 final size:15
Alignment explanation
Indices: 31710875--31710916 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
31710865 ATAAGAATTT
*
31710875 TATTAAATTAT-ATA
1 TATTTAATTATAATA
31710889 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
31710903 TATTTAATAATAAT
1 TATTTAATTATAAT
31710917 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:31711021 original size:151 final size:154
Alignment explanation
Indices: 31710859--31711169 Score: 520
Period size: 151 Copynumber: 2.0 Consensus size: 154
31710849 ATAAGAATAT
*
31710859 TAATTAATAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTT
1 TAATTAATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
* *
31710924 AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAAT-AAT-
66 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAAATA
*
31710987 A-ATTTACCAAAACAAATTTCTGC
131 ACATTTACCAAAACAAATTTATGC
*
31711010 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTAATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
*
31711075 AAATATGATTAAAATATTTATTATTGATAATAATTATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAAT-A-AA
31711140 TAATCATTTACCAAAACAAATTTATGC
129 TAA-CATTTACCAAAACAAATTTATGC
31711167 TAA
1 TAA
31711170 GGGTATTCTA
Statistics
Matches: 148, Mismatches: 6, Indels: 6
0.93 0.04 0.04
Matches are distributed among these distances:
151 120 0.81
154 3 0.02
155 1 0.01
157 24 0.16
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (154 bp):
TAATTAATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAAATA
ACATTTACCAAAACAAATTTATGC
Found at i:31711050 original size:18 final size:17
Alignment explanation
Indices: 31711022--31711056 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
31711012 ATTATTAAGA
*
31711022 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
31711039 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
31711057 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:31711313 original size:16 final size:16
Alignment explanation
Indices: 31711292--31711327 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
31711282 GATTTGCTAT
31711292 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
31711308 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
31711324 TACA
1 TACA
31711328 GCGAACCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.36, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:31713089 original size:88 final size:88
Alignment explanation
Indices: 31712940--31713117 Score: 356
Period size: 88 Copynumber: 2.0 Consensus size: 88
31712930 CCTAGGTACA
31712940 TGTCGAGACCAAAAAGAACCATTCACCAACACTTGAGTTTGGGATTGCCATGGATGCTGAGTCGG
1 TGTCGAGACCAAAAAGAACCATTCACCAACACTTGAGTTTGGGATTGCCATGGATGCTGAGTCGG
31713005 CATACGAATCGAAGTACCTAACT
66 CATACGAATCGAAGTACCTAACT
31713028 TGTCGAGACCAAAAAGAACCATTCACCAACACTTGAGTTTGGGATTGCCATGGATGCTGAGTCGG
1 TGTCGAGACCAAAAAGAACCATTCACCAACACTTGAGTTTGGGATTGCCATGGATGCTGAGTCGG
31713093 CATACGAATCGAAGTACCTAACT
66 CATACGAATCGAAGTACCTAACT
31713116 TG
1 TG
31713118 CGCACGAAAG
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 90 1.00
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.23
Consensus pattern (88 bp):
TGTCGAGACCAAAAAGAACCATTCACCAACACTTGAGTTTGGGATTGCCATGGATGCTGAGTCGG
CATACGAATCGAAGTACCTAACT
Found at i:31713487 original size:18 final size:18
Alignment explanation
Indices: 31713464--31713525 Score: 83
Period size: 18 Copynumber: 3.4 Consensus size: 18
31713454 ATTACATTCT
31713464 ATATCATTTGTCCTTTCA
1 ATATCATTTGTCCTTTCA
*
31713482 ATATCATTTG-CTATTTCA
1 ATATCATTTGTC-CTTTCA
31713500 ATATCATTT-TCCATTTCA
1 ATATCATTTGTCC-TTTCA
31713518 ATATCATT
1 ATATCATT
31713526 GTAATACCCA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
17 1 0.03
18 38 0.97
ACGTcount: A:0.27, C:0.19, G:0.03, T:0.50
Consensus pattern (18 bp):
ATATCATTTGTCCTTTCA
Found at i:31720370 original size:60 final size:59
Alignment explanation
Indices: 31720270--31720387 Score: 218
Period size: 60 Copynumber: 2.0 Consensus size: 59
31720260 AAAAGGTATC
31720270 AATACCAAATCTCTATTCTGATTTTTACACATTTCAAAACACAGAGGAATTGATTTTAT
1 AATACCAAATCTCTATTCTGATTTTTACACATTTCAAAACACAGAGGAATTGATTTTAT
*
31720329 AATACCAAATCTTTATTCTGACTTTTTACACATTTCAAAACACAGAGGAATTGATTTTA
1 AATACCAAATCTCTATTCTGA-TTTTTACACATTTCAAAACACAGAGGAATTGATTTTA
31720388 AAACTTGATT
Statistics
Matches: 57, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
59 20 0.35
60 37 0.65
ACGTcount: A:0.37, C:0.17, G:0.08, T:0.37
Consensus pattern (59 bp):
AATACCAAATCTCTATTCTGATTTTTACACATTTCAAAACACAGAGGAATTGATTTTAT
Found at i:31724728 original size:42 final size:42
Alignment explanation
Indices: 31724620--31724774 Score: 156
Period size: 42 Copynumber: 3.7 Consensus size: 42
31724610 GTGAAAAAAT
*
31724620 GCCGCTAAAGATCATGATTTTTAGCGGCGCTTTTAC-CTAAAAC
1 GCCGCTAAAGATCATGATCTTTAGCGGCGCTTTTACAC--AAAC
*
31724663 GCCGCTAAAAGA-CAT-AACATTTAGCGGCGCTTTTACACAAAC
1 GCCGCT-AAAGATCATGATC-TTTAGCGGCGCTTTTACACAAAC
* * * *
31724705 GCCGCTAAAGATCGTGGTCTTTAGCGGTGCTTTTATCAAAAAC
1 GCCGCTAAAGATCATGATCTTTAGCGGCGCTTTTA-CACAAAC
* * *
31724748 -ACGCTAAAAATCATGACCTTTAGCGGC
1 GCCGCTAAAGATCATGATCTTTAGCGGC
31724775 ACTTCTATTA
Statistics
Matches: 93, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
41 5 0.05
42 49 0.53
43 33 0.35
44 6 0.06
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.26
Consensus pattern (42 bp):
GCCGCTAAAGATCATGATCTTTAGCGGCGCTTTTACACAAAC
Found at i:31724788 original size:85 final size:85
Alignment explanation
Indices: 31724620--31724791 Score: 204
Period size: 85 Copynumber: 2.0 Consensus size: 85
31724610 GTGAAAAAAT
* * *
31724620 GCCGCTAAAGATCATGATTTTTAGCGGCGCTTTTACCTAAAACGCCGCTAAAAGACATAACATTT
1 GCCGCTAAAGATCATGATCTTTAGCGGCGCTTTTACCAAAAACGACGCTAAAAGACATAACATTT
* *
31724685 AGCGGCGCTTTTACACAAAC
66 AGCGGCACTTCTACACAAAC
* * * * * *
31724705 GCCGCTAAAGATCGTGGTCTTTAGCGGTGCTTTTATCAAAAAC-ACGCTAAAA-ATCATGACCTT
1 GCCGCTAAAGATCATGATCTTTAGCGGCGCTTTTACCAAAAACGACGCTAAAAGA-CATAACATT
*
31724768 TAGCGGCACTTCTATTACAAAC
65 TAGCGGCACTTCTA-CACAAAC
31724790 GC
1 GC
31724792 TGTTATAAAG
Statistics
Matches: 73, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
83 1 0.01
84 27 0.37
85 45 0.62
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (85 bp):
GCCGCTAAAGATCATGATCTTTAGCGGCGCTTTTACCAAAAACGACGCTAAAAGACATAACATTT
AGCGGCACTTCTACACAAAC
Found at i:31730139 original size:26 final size:25
Alignment explanation
Indices: 31730099--31730168 Score: 79
Period size: 26 Copynumber: 2.8 Consensus size: 25
31730089 ACTAATTAAT
* *
31730099 CTAAAT-CTTAAACCCTAATCTGACC
1 CTAAATCCCTAAACCCTAACCTGA-C
31730124 CTAAATCCCTAAACCCTAACCTGAC
1 CTAAATCCCTAAACCCTAACCTGAC
* *
31730149 CTCGAATCCCTAACCCCTAA
1 CT-AAATCCCTAAACCCTAA
31730169 ACATTATTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
25 9 0.23
26 30 0.77
ACGTcount: A:0.34, C:0.39, G:0.04, T:0.23
Consensus pattern (25 bp):
CTAAATCCCTAAACCCTAACCTGAC
Found at i:31730243 original size:22 final size:20
Alignment explanation
Indices: 31730206--31730245 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
31730196 CACTAATTAA
*
31730206 TCTAAACCTAACCCCTAACC
1 TCTAAACCTAAACCCTAACC
31730226 TCTAAATCCATAAACCCTAA
1 TCTAAA-CC-TAAACCCTAA
31730246 ATCCCTAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 2 0.12
22 9 0.53
ACGTcount: A:0.40, C:0.38, G:0.00, T:0.23
Consensus pattern (20 bp):
TCTAAACCTAAACCCTAACC
Found at i:31730353 original size:14 final size:15
Alignment explanation
Indices: 31730336--31730368 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
31730326 CTTAAATCAG
31730336 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
31730350 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
31730365 AATC
1 AATC
31730369 TATAAACCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.30
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:31731045 original size:40 final size:41
Alignment explanation
Indices: 31730981--31731180 Score: 235
Period size: 41 Copynumber: 4.9 Consensus size: 41
31730971 AATTTTTTTT
* *
31730981 ATTAGCAGCGCTTTTTCAAAAACGCCGCTAAAGGCTAGAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCAGAGC
* *
31731022 ATTAGCGGCGC-TATTCAAAAACGCCCGCTAAAGGCCGGAGC
1 ATTAGCGGCGCTTTTTCAAAAACG-CCGCTAAAGGCCAGAGC
* * * *
31731063 ATTAGTGGCGCTTCTTCAAAAAAAGGCCGCTAAAGGCCCGAGC
1 ATTAGCGGCGCTTTTTC--AAAAACGCCGCTAAAGGCCAGAGC
* * *
31731106 ATTAGCGGCGCTTTTCCAAAAATGCCGCTAAA-GCCAGAGA
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCAGAGC
* *
31731146 ATTAGCGGCGCTTTTTCAAAAA-TCAGCTAAAGGCC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCC
31731181 CCAAAAACTC
Statistics
Matches: 137, Mismatches: 17, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
39 7 0.05
40 41 0.30
41 49 0.36
42 4 0.03
43 30 0.22
44 6 0.04
ACGTcount: A:0.31, C:0.26, G:0.23, T:0.20
Consensus pattern (41 bp):
ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCAGAGC
Found at i:31731134 original size:84 final size:83
Alignment explanation
Indices: 31730981--31731167 Score: 236
Period size: 84 Copynumber: 2.3 Consensus size: 83
31730971 AATTTTTTTT
* * *
31730981 ATTAGCAGCGCTTTTTC--AAAAACGCCGCTAAAGGCTAGAGCATTAGCGGCGCTATTCAAAAAC
1 ATTAGCGGCGCTTCTTCAAAAAAACGCCGCTAAAGGCCAGAGCATTAGCGGCGCTATTCAAAAAC
* *
31731044 GCCCGCTAAAGGCCGGAGC
66 GCCCGCTAAA-GCCAGAGA
* * * *
31731063 ATTAGTGGCGCTTCTTCAAAAAAAGGCCGCTAAAGGCCCGAGCATTAGCGGCGCTTTTCCAAAAA
1 ATTAGCGGCGCTTCTTCAAAAAAACGCCGCTAAAGGCCAGAGCATTAGCGGCGCTATT-CAAAAA
*
31731128 TG-CCGCTAAAGCCAGAGA
65 CGCCCGCTAAAGCCAGAGA
*
31731146 ATTAGCGGCGCTTTTTCAAAAA
1 ATTAGCGGCGCTTCTTCAAAAA
31731168 TCAGCTAAAG
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
82 14 0.16
83 26 0.29
84 43 0.48
85 7 0.08
ACGTcount: A:0.31, C:0.25, G:0.24, T:0.20
Consensus pattern (83 bp):
ATTAGCGGCGCTTCTTCAAAAAAACGCCGCTAAAGGCCAGAGCATTAGCGGCGCTATTCAAAAAC
GCCCGCTAAAGCCAGAGA
Found at i:31731341 original size:40 final size:40
Alignment explanation
Indices: 31731235--31731367 Score: 128
Period size: 40 Copynumber: 3.4 Consensus size: 40
31731225 GCGCTTTTCA
* ** *
31731235 AAAAACGCCGCTAATGCTT-ATTTTTAGCGTTGTTTTCCA-
1 AAAAGCGCCGCTAATGCTTGATTTTTAGCGACGTTTT-TAT
* **
31731274 AAAAGCGCCGCTAATGCTCGACCTTTAGCGACGTTTTTAT
1 AAAAGCGCCGCTAATGCTTGATTTTTAGCGACGTTTTTAT
* * *
31731314 AAAAGCGCCGCTAATGCTTGATTTTTAGTGGCTTTTTTAT
1 AAAAGCGCCGCTAATGCTTGATTTTTAGCGACGTTTTTAT
*
31731354 CCAAA-CGCCGCTAA
1 -AAAAGCGCCGCTAA
31731368 AAACACCGCT
Statistics
Matches: 77, Mismatches: 14, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
39 18 0.23
40 56 0.73
41 3 0.04
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.34
Consensus pattern (40 bp):
AAAAGCGCCGCTAATGCTTGATTTTTAGCGACGTTTTTAT
Found at i:31736480 original size:30 final size:29
Alignment explanation
Indices: 31736438--31736526 Score: 97
Period size: 30 Copynumber: 3.0 Consensus size: 29
31736428 AGAATCAGTT
* *
31736438 TGGGCCTGAGCCCTATACAATAGTAGTGTG
1 TGGGCCT-AGCCCAATACAATAATAGTGTG
* *
31736468 TGGGCCATAGCCCAATACAATATTAGAGTG
1 TGGGCC-TAGCCCAATACAATAATAGTGTG
* *
31736498 TAGGCCTTAGCCCAATACAGTAATAGTGT
1 TGGGCC-TAGCCCAATACAATAATAGTGT
31736527 AGGCCTTATC
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
30 49 0.98
31 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (29 bp):
TGGGCCTAGCCCAATACAATAATAGTGTG
Found at i:31736533 original size:28 final size:28
Alignment explanation
Indices: 31736465--31736549 Score: 89
Period size: 28 Copynumber: 3.0 Consensus size: 28
31736455 CAATAGTAGT
* * * *
31736465 GTGTGGGCCATAGCCCAATACAATATTAGA
1 GTGTAGGCCTTAGCCCAATACAGTA--ATA
31736495 GTGTAGGCCTTAGCCCAATACAGTAATA
1 GTGTAGGCCTTAGCCCAATACAGTAATA
* * *
31736523 GTGTAGGCCTTATCCCAAAATAGTAAT
1 GTGTAGGCCTTAGCCCAATACAGTAAT
31736550 CAGTACAAAT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
28 26 0.54
30 22 0.46
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (28 bp):
GTGTAGGCCTTAGCCCAATACAGTAATA
Found at i:31736749 original size:26 final size:26
Alignment explanation
Indices: 31736665--31736733 Score: 120
Period size: 26 Copynumber: 2.7 Consensus size: 26
31736655 AATATCGCAA
31736665 CAAAGCTGCCAGTATCAGTAATGCAG
1 CAAAGCTGCCAGTATCAGTAATGCAG
*
31736691 CAAAGCTGCCAGTAACAGTAATGCAG
1 CAAAGCTGCCAGTATCAGTAATGCAG
*
31736717 CAAAGCTGCAAGTATCA
1 CAAAGCTGCCAGTATCA
31736734 ATATTGTAGT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.17
Consensus pattern (26 bp):
CAAAGCTGCCAGTATCAGTAATGCAG
Found at i:31736975 original size:27 final size:27
Alignment explanation
Indices: 31736945--31737004 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
31736935 CATCTCCTAG
* *
31736945 GGGTATAACGGTTATTTTACCCTTC-A
1 GGGTATAACAGTAATTTTACCCTTCGA
**
31736971 TGGGTATTTCAGTAATTTTACCCTTCGA
1 -GGGTATAACAGTAATTTTACCCTTCGA
31736999 GGGTAT
1 GGGTAT
31737005 TTCGATAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 27 0.96
28 1 0.04
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.40
Consensus pattern (27 bp):
GGGTATAACAGTAATTTTACCCTTCGA
Found at i:31737005 original size:27 final size:27
Alignment explanation
Indices: 31736953--31737199 Score: 217
Period size: 27 Copynumber: 9.4 Consensus size: 27
31736943 AGGGGTATAA
*
31736953 CGGTTATTTTACCCTTC-ATGGGTATTT
1 CGGTAATTTTACCCTTCGA-GGGTATTT
*
31736980 CAGTAATTTTACCCTTCGAGGGTATTT
1 CGGTAATTTTACCCTTCGAGGGTATTT
* * * *
31737007 CGATAATTTTATTCATT-AAGGGTATTT
1 CGGTAATTTTA-CCCTTCGAGGGTATTT
*
31737034 CGGTAATTTTACCCTT-TAGAGGTATTT
1 CGGTAATTTTACCCTTCGAG-GGTATTT
**
31737061 CGGTAATTTTACCCTTTAAGGGTATTT
1 CGGTAATTTTACCCTTCGAGGGTATTT
*
31737088 TGGTAATTTTACCCATT-GAGGGTATTT
1 CGGTAATTTTACCC-TTCGAGGGTATTT
** * * *
31737115 CAATAATTTTATCCTTGGAGGATATTT
1 CGGTAATTTTACCCTTCGAGGGTATTT
*
31737142 TGGTAATTTTA-CC--C-A--GTATTT
1 CGGTAATTTTACCCTTCGAGGGTATTT
*
31737163 CGGTAATTTTACCCATCGAGGGTATTT
1 CGGTAATTTTACCCTTCGAGGGTATTT
**
31737190 TAGTAATTTT
1 CGGTAATTTT
31737200 CCCACGAATT
Statistics
Matches: 181, Mismatches: 27, Indels: 24
0.78 0.12 0.10
Matches are distributed among these distances:
21 15 0.08
22 2 0.01
23 1 0.01
24 1 0.01
25 1 0.01
26 9 0.05
27 144 0.80
28 8 0.04
ACGTcount: A:0.23, C:0.14, G:0.18, T:0.45
Consensus pattern (27 bp):
CGGTAATTTTACCCTTCGAGGGTATTT
Found at i:31737083 original size:81 final size:81
Alignment explanation
Indices: 31736953--31737199 Score: 240
Period size: 81 Copynumber: 3.1 Consensus size: 81
31736943 AGGGGTATAA
* * * *
31736953 CGGTTATTTTACCCTTCATG-GGTATTTCAGTAATTTTACCCTTCGAGGGTATTTCGATAATTTT
1 CGGTAATTTTACCCTTTA-GAGGTATTTCGGTAATTTTACCCTTCAAGGGTATTTCGATAATTTT
**
31737017 ATTCATTAAGGGTATTT
65 ACCCATTAAGGGTATTT
* * *
31737034 CGGTAATTTTACCCTTTAGAGGTATTTCGGTAATTTTACCCTTTAAGGGTATTTTGGTAATTTTA
1 CGGTAATTTTACCCTTTAGAGGTATTTCGGTAATTTTACCCTTCAAGGGTATTTCGATAATTTTA
*
31737099 CCCATTGAGGGTATTT
66 CCCATTAAGGGTATTT
** * * * *
31737115 CAATAATTTTATCC-TTGGAGGATATTTTGGTAATTTTA-CC--C-A--GTATTTCGGTAATTTT
1 CGGTAATTTTACCCTTTAGAGG-TATTTCGGTAATTTTACCCTTCAAGGGTATTTCGATAATTTT
**
31737173 ACCCATCGAGGGTATTT
65 ACCCATTAAGGGTATTT
**
31737190 TAGTAATTTT
1 CGGTAATTTT
31737200 CCCACGAATT
Statistics
Matches: 144, Mismatches: 20, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
75 39 0.27
77 1 0.01
80 9 0.06
81 95 0.66
ACGTcount: A:0.23, C:0.14, G:0.18, T:0.45
Consensus pattern (81 bp):
CGGTAATTTTACCCTTTAGAGGTATTTCGGTAATTTTACCCTTCAAGGGTATTTCGATAATTTTA
CCCATTAAGGGTATTT
Found at i:31737167 original size:21 final size:21
Alignment explanation
Indices: 31737137--31737177 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
31737127 CCTTGGAGGA
*
31737137 TATTTTGGTAATTTTACCCAG
1 TATTTCGGTAATTTTACCCAG
31737158 TATTTCGGTAATTTTACCCA
1 TATTTCGGTAATTTTACCCA
31737178 TCGAGGGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.17, G:0.12, T:0.46
Consensus pattern (21 bp):
TATTTCGGTAATTTTACCCAG
Found at i:31740923 original size:50 final size:50
Alignment explanation
Indices: 31740781--31741077 Score: 319
Period size: 50 Copynumber: 5.8 Consensus size: 50
31740771 GATAGTAACA
* ** * *
31740781 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCATGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAT-CGG
* * * **
31740830 TGCCAATGACATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * ** *
31740880 TGCCCATGCCATGTCCCAGACATAGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * *
31740930 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * *
31740980 TGCCAATTCCATGTCCCAAACATGGTCTTACATGAGACCTCTCATGATCTCAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC--GG
*
31741035 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
31741078 TTACCCAAAT
Statistics
Matches: 206, Mismatches: 34, Indels: 9
0.83 0.14 0.04
Matches are distributed among these distances:
48 1 0.00
49 39 0.19
50 124 0.60
53 2 0.01
55 2 0.01
56 38 0.18
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:31749087 original size:13 final size:13
Alignment explanation
Indices: 31749071--31749100 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
31749061 ATTGTCATGT
31749071 AATTGTTTTTCTG
1 AATTGTTTTTCTG
31749084 AATTGTTTTTCTG
1 AATTGTTTTTCTG
31749097 AATT
1 AATT
31749101 TAGCTGATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.20, C:0.07, G:0.13, T:0.60
Consensus pattern (13 bp):
AATTGTTTTTCTG
Found at i:31750145 original size:157 final size:157
Alignment explanation
Indices: 31749979--31750288 Score: 539
Period size: 157 Copynumber: 2.0 Consensus size: 157
31749969 ATAAGAATAT
*
31749979 TAATTATTAAGAATTTTATTAAATTATATATTTTAAGTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAAGTAAAATATATTTAATAATAATTATGTTT
* *
31750044 AAATATGATTAAATTATTTATTATTCATATTAATAATCTTATCAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTATTCATAATAATAATCTTATCAAAATTTAAATAACAATAACAA
31750109 TAATAATTTACCAAAACAAATTTCTGG
131 TAATAATTTACCAAAACAAATTTCTGG
* * *
31750136 TAATTATTAAGAATTTTATTAAATTATATCTTTTAATTAAAATATGTTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAAGTAAAATATATTTAATAATAATTATGTTT
* *
31750201 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTATTCATAATAATAATCTTATCAAAATTTAAATAACAATAACAA
*
31750266 TAATCATTTACCAAAACAAATTT
131 TAATAATTTACCAAAACAAATTT
31750289 ATGCTAAGGG
Statistics
Matches: 144, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
157 144 1.00
ACGTcount: A:0.47, C:0.05, G:0.04, T:0.44
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAAGTAAAATATATTTAATAATAATTATGTTT
AAATATGATTAAAATATTTATTATTCATAATAATAATCTTATCAAAATTTAAATAACAATAACAA
TAATAATTTACCAAAACAAATTTCTGG
Found at i:31750439 original size:16 final size:16
Alignment explanation
Indices: 31750418--31750485 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
31750408 GATTTGCTAT
* *
31750418 TACACCTTTAATCTAA
1 TACACCTCTAATCCAA
31750434 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
31750450 TACACTTCTAATCCAA
1 TACACCTCTAATCCAA
31750466 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
31750482 TACA
1 TACA
31750486 GCGAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.38, C:0.32, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:31753608 original size:26 final size:25
Alignment explanation
Indices: 31753552--31753608 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
31753542 TTAATATTTC
* *
31753552 AAATATTATATATTTACAACAGTAA
1 AAATAATATAAATTTACAACAGTAA
31753577 ATAATAATATAAATTTA-AATCAGTACA
1 A-AATAATATAAATTTACAA-CAGTA-A
31753604 AAATA
1 AAATA
31753609 TAACGAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
25 3 0.11
26 22 0.81
27 2 0.07
ACGTcount: A:0.56, C:0.07, G:0.04, T:0.33
Consensus pattern (25 bp):
AAATAATATAAATTTACAACAGTAA
Found at i:31760120 original size:11 final size:12
Alignment explanation
Indices: 31760090--31760123 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
31760080 CAGCTTGCCC
31760090 ATATTAATTTTT
1 ATATTAATTTTT
31760102 ATATTAATTTTT
1 ATATTAATTTTT
31760114 ATA-TAATTTT
1 ATATTAATTTT
31760124 AAAATATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 7 0.32
12 15 0.68
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:31760271 original size:30 final size:30
Alignment explanation
Indices: 31760228--31760286 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
31760218 CTCAACAATA
31760228 AAATGCTTCTAAAATAATAA-AAGAATTAAT
1 AAATGCTTCTAAAATAATAACAA-AATTAAT
31760258 AAATGTCTT-TAAAATAATAACAAAATTAA
1 AAATG-CTTCTAAAATAATAACAAAATTAA
31760287 CAATAAAACA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.58, C:0.07, G:0.05, T:0.31
Consensus pattern (30 bp):
AAATGCTTCTAAAATAATAACAAAATTAAT
Found at i:31766312 original size:114 final size:113
Alignment explanation
Indices: 31766141--31766353 Score: 306
Period size: 114 Copynumber: 1.9 Consensus size: 113
31766131 AAAATAAGCA
** * *
31766141 TTAGCGGAGTTTTTCAGAAAGTGCCGCAAAAAACCTAAGCCCAATGACGCCGTTTTCTGAG-CTT
1 TTAGCGGAGTTTTTCAGAAAGTGCCGCAAAAAACCTAAGCCCAACAACCCCATTTTCTG-GCCTT
31766205 TCGGGGATTTAGCGGCGTTTTT-AGGAAAGCGCCGCTAATTGTCAGGGCT
65 TCGGGGATTTAGCGGCGTTTTTGAGG-AAGCGCCGCTAATTGTCAGGGCT
* * *
31766254 TTAGCGGCGTTTTTGATAAAGCT-CCGCAAAAAAACCTAAGCCCAACAACCCCATTTTCTGGCCT
1 TTAGCGGAGTTTTTCAGAAAG-TGCCGC-AAAAAACCTAAGCCCAACAACCCCATTTTCTGGCCT
31766318 TTCGGGGATTTAGCGGCGTTTTTGAGGAAGCGCCGC
64 TTCGGGGATTTAGCGGCGTTTTTGAGGAAGCGCCGC
31766354 AAAGAAACAT
Statistics
Matches: 89, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
113 23 0.26
114 63 0.71
115 3 0.03
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (113 bp):
TTAGCGGAGTTTTTCAGAAAGTGCCGCAAAAAACCTAAGCCCAACAACCCCATTTTCTGGCCTTT
CGGGGATTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATTGTCAGGGCT
Found at i:31766384 original size:73 final size:73
Alignment explanation
Indices: 31766253--31766424 Score: 220
Period size: 73 Copynumber: 2.3 Consensus size: 73
31766243 TTGTCAGGGC
* * *
31766253 TTTAGCGGCGTTTTTGATAAAGCTCCGCAAAAAAACCTAAGCCCAACAACCCCATTTTCTG-GCC
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACATAAGCCCAACAACCCCATTTTCTGAG-C
31766317 TTTCGGGGA
65 TTTCGGGGA
* * ** * * *
31766326 TTTAGCGGCGTTTTTGAGGAAGCGCCGCAAAGAAACATAAGCCCAATGACGCCGTTTTCTGAGTT
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACATAAGCCCAACAACCCCATTTTCTGAGCT
31766391 TTCGGGGA
66 TTCGGGGA
*
31766399 TTTAGCGGCGTTTCTTAAGAAAGCGC
1 TTTAGCGGCGTTT-TTGAGAAAGCGC
31766425 TGCTAATGCT
Statistics
Matches: 85, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
73 74 0.87
74 11 0.13
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (73 bp):
TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACATAAGCCCAACAACCCCATTTTCTGAGCT
TTCGGGGA
Found at i:31766517 original size:188 final size:186
Alignment explanation
Indices: 31766141--31766541 Score: 565
Period size: 188 Copynumber: 2.1 Consensus size: 186
31766131 AAAATAAGCA
* * * *
31766141 TTAGCGGAGTTTTTCAGAAAGTGCCGCAAAAAACCTAAGCCCAATGACGCCGTTTTCTGAGCTTT
1 TTAGCGGCGTTTTTCAGGAAGCGCCGCAAAAAACATAAGCCCAATGACGCCGTTTTCTGAGCTTT
* * *
31766206 CGGGGATTTAGCGGCGTTTTTAGGAAAGCGCCGCTAATTGTCAGGGCTTTAGCGGCGTTTTTGAT
66 CGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATTGTCAGGGATTTAGCGGCGTTTTTGAG
* * *
31766271 AAAGCTCCGCAAAAAAACCTAAGCCCAACAACCCCATTTTCTGGCCTTTCGGGGAT
131 AAAGCGCCGCAAAAAAACCTAAGCCCAACAACCCCATTTTCTAGCCTTTCGCGGAT
* *
31766327 TTAGCGGCGTTTTTGAGGAAGCGCCGCAAAGAAACATAAGCCCAATGACGCCGTTTTCTGAGTTT
1 TTAGCGGCGTTTTTCAGGAAGCGCCGCAAA-AAACATAAGCCCAATGACGCCGTTTTCTGAGCTT
* *
31766392 TCGGGGATTTAGCGGCGTTTCTTAAGAAAGCGCTGCTAA-TGCTGAGGGATTTAGCGGCGTTTTT
65 TCGGGGATTTAGCGGCGTTT-TTAAGAAAGCGCCGCTAATTG-TCAGGGATTTAGCGGCGTTTTT
* * *
31766456 GAGAAAGCGCCGCAAAATAAA-CTAAGCCCAACGACGCCGTTTTCTAAG-CTTTCGCGGAT
128 GAGAAAGCGCCGCAAAA-AAACCTAAGCCCAACAACCCCATTTTCT-AGCCTTTCGCGGAT
* *
31766515 TTAGTGGCGTTTTTTAGGAAGCGCCGC
1 TTAGCGGCGTTTTTCAGGAAGCGCCGC
31766542 TAATGCTCAG
Statistics
Matches: 191, Mismatches: 19, Indels: 8
0.88 0.09 0.04
Matches are distributed among these distances:
186 26 0.14
187 54 0.28
188 107 0.56
189 4 0.02
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (186 bp):
TTAGCGGCGTTTTTCAGGAAGCGCCGCAAAAAACATAAGCCCAATGACGCCGTTTTCTGAGCTTT
CGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATTGTCAGGGATTTAGCGGCGTTTTTGAG
AAAGCGCCGCAAAAAAACCTAAGCCCAACAACCCCATTTTCTAGCCTTTCGCGGAT
Found at i:31766596 original size:114 final size:115
Alignment explanation
Indices: 31766326--31766816 Score: 684
Period size: 115 Copynumber: 4.3 Consensus size: 115
31766316 CTTTCGGGGA
* * *
31766326 TTTAGCGGCGTTTTTGAGGAAGCGCCGCAAAGAA-ACATAAGCCCAATGACGCCGTTTTCTGAGT
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAA-AAGACATAAGCCCAACGACGCCGTTTTCTGAGC
* * * * * *
31766390 TTTCGGGGATTTAGCGGCGTTTCTTAAGAAAGCGCTGCTAATGCTGAGGGA
65 TTTCGGGGATTTAACGGCGTTTTTTAGGAAAGCGCCGCTAATGCTCAGGGC
* *
31766441 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAATAAAC-TAAGCCCAACGACGCCGTTTTCTAAGC
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAA-AGACATAAGCCCAACGACGCCGTTTTCTGAGC
* **
31766505 TTTCGCGGATTTAGTGGCGTTTTTTAGG-AAGCGCCGCTAATGCTCAGGGC
65 TTTCGGGGATTTAACGGCGTTTTTTAGGAAAGCGCCGCTAATGCTCAGGGC
* *
31766555 TTTAGCGGCGTTTTTGAAAAAGTGCCGCAAAAAGACATAAGCCCAACGACGCCGTTTTCTGAGCT
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAGACATAAGCCCAACGACGCCGTTTTCTGAGCT
* * ** *
31766620 TTCAGGGATTTAACGACGTTTTTTAGGAAAAAGCCGCTAATGCTCAGGTC
66 TTCGGGGATTTAACGGCGTTTTTTAGGAAAGCGCCGCTAATGCTCAGGGC
* *
31766670 TTTAGCGACGTTTTTGAGAAAGCACCGCAAAAAGACATAAGCCCAACGACGCCGTTTTCTGAGCT
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAGACATAAGCCCAACGACGCCGTTTTCTGAGCT
* *
31766735 TTCGGGGATTTAACGGCG-TTTTTAGGAAAGCACCGCTAATGCTCAGGTC
66 TTCGGGGATTTAACGGCGTTTTTTAGGAAAGCGCCGCTAATGCTCAGGGC
* * *
31766784 TTTAGCGGTGTTTTTGGGAAAGCGCCGTAAAAA
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAA
31766817 AATAGGGTTT
Statistics
Matches: 335, Mismatches: 37, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
113 3 0.01
114 155 0.46
115 175 0.52
116 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (115 bp):
TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAGACATAAGCCCAACGACGCCGTTTTCTGAGCT
TTCGGGGATTTAACGGCGTTTTTTAGGAAAGCGCCGCTAATGCTCAGGGC
Found at i:31766609 original size:229 final size:229
Alignment explanation
Indices: 31766326--31766810 Score: 670
Period size: 229 Copynumber: 2.1 Consensus size: 229
31766316 CTTTCGGGGA
** * *
31766326 TTTAGCGGCGTTTTTGAGGAAGCGCCGCAAAGAAACATAAGCCCAATGACGCCGTTTTCTGAGTT
1 TTTAGCGGCGTTTTTGAAAAAGCGCCGCAAAGAAACATAAGCCCAACGACGCCGTTTTCTGAGCT
* * * ** * * *
31766391 TTCGGGGATTTAGCGGCGTTTCTTAAGAAAGCGCTGCTAATGCTGAGGGATTTAGCGGCGTTTTT
66 TTCAGGGATTTAACGACGTTTCTTAAGAAAAAGCCGCTAATGCTCAGGGATTTAGCGACGTTTTT
* **
31766456 GAGAAAGCGCCGCAAAATAAAC-TAAGCCCAACGACGCCGTTTTCTAAGCTTTCGCGGATTTAGT
131 GAGAAAGCACCGCAAAA-AAACATAAGCCCAACGACGCCGTTTTCTAAGCTTTCGCGGATTTAAC
*
31766520 GGCGTTTTTTAGG-AAGCGCCGCTAATGCTCAGGGC
195 GGCG-TTTTTAGGAAAGCACCGCTAATGCTCAGGGC
*
31766555 TTTAGCGGCGTTTTTGAAAAAGTGCCGCAAA-AAGACATAAGCCCAACGACGCCGTTTTCTGAGC
1 TTTAGCGGCGTTTTTGAAAAAGCGCCGCAAAGAA-ACATAAGCCCAACGACGCCGTTTTCTGAGC
* * **
31766619 TTTCAGGGATTTAACGACGTTTTTTAGGAAAAAGCCGCTAATGCTCAGGTCTTTAGCGACGTTTT
65 TTTCAGGGATTTAACGACGTTTCTTAAGAAAAAGCCGCTAATGCTCAGGGATTTAGCGACGTTTT
* * *
31766684 TGAGAAAGCACCGCAAAAAGACATAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAAC
130 TGAGAAAGCACCGCAAAAAAACATAAGCCCAACGACGCCGTTTTCTAAGCTTTCGCGGATTTAAC
*
31766749 GGCGTTTTTAGGAAAGCACCGCTAATGCTCAGGTC
195 GGCGTTTTTAGGAAAGCACCGCTAATGCTCAGGGC
* **
31766784 TTTAGCGGTGTTTTTGGGAAAGCGCCG
1 TTTAGCGGCGTTTTTGAAAAAGCGCCG
31766811 TAAAAAAATA
Statistics
Matches: 224, Mismatches: 29, Indels: 6
0.86 0.11 0.02
Matches are distributed among these distances:
228 13 0.06
229 211 0.94
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (229 bp):
TTTAGCGGCGTTTTTGAAAAAGCGCCGCAAAGAAACATAAGCCCAACGACGCCGTTTTCTGAGCT
TTCAGGGATTTAACGACGTTTCTTAAGAAAAAGCCGCTAATGCTCAGGGATTTAGCGACGTTTTT
GAGAAAGCACCGCAAAAAAACATAAGCCCAACGACGCCGTTTTCTAAGCTTTCGCGGATTTAACG
GCGTTTTTAGGAAAGCACCGCTAATGCTCAGGGC
Found at i:31766924 original size:14 final size:14
Alignment explanation
Indices: 31766905--31766931 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
31766895 GAGTATGGGT
31766905 TTAGGGATTATGGA
1 TTAGGGATTATGGA
31766919 TTAGGGATTATGG
1 TTAGGGATTATGG
31766932 TTTAAGGGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.00, G:0.37, T:0.37
Consensus pattern (14 bp):
TTAGGGATTATGGA
Found at i:31767865 original size:18 final size:19
Alignment explanation
Indices: 31767831--31767867 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
31767821 AAAAAACTGC
*
31767831 AAAATATAAATAAAATTAT
1 AAAAAATAAATAAAATTAT
31767850 AAAAAATAAA-AAAATTAT
1 AAAAAATAAATAAAATTAT
31767868 TTGCATAGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (19 bp):
AAAAAATAAATAAAATTAT
Found at i:31767924 original size:103 final size:104
Alignment explanation
Indices: 31767801--31768012 Score: 270
Period size: 104 Copynumber: 2.0 Consensus size: 104
31767791 AAAGATAAGC
* * * * * *
31767801 AATAGCGGCGTTTTCTATAAAAAAAACTGCAAAATATAAATAAAATTATAAAA-AATA-AAAAAA
1 AATAACGGCGTTTTCCAT-AAAAAAACCGCAAAAAATAAATAAAATTAAAAAACAAAATAAAAAA
*
31767864 TTATT-TGCATAGCAAAACGGCGTCATTTTGA-TCAAAATGA
65 TT-TTGTGCATAGCAAAACGGAGTCATTTT-ATTCAAAATGA
** * *
31767904 AATAACGGCGTTTTCCATAAAAACGCCGCAAAAAATAAATCAATTTAAAAAACAAAATAAAAAAT
1 AATAACGGCGTTTTCCATAAAAAAACCGCAAAAAATAAATAAAATTAAAAAACAAAATAAAAAAT
31767969 TTTGTGCATAGCAAAACGGAGTCATTTTATTCAAAATGA
66 TTTGTGCATAGCAAAACGGAGTCATTTTATTCAAAATGA
31768008 AATAA
1 AATAA
31768013 TATTTTGCGG
Statistics
Matches: 94, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
102 27 0.29
103 22 0.23
104 45 0.48
ACGTcount: A:0.50, C:0.12, G:0.11, T:0.26
Consensus pattern (104 bp):
AATAACGGCGTTTTCCATAAAAAAACCGCAAAAAATAAATAAAATTAAAAAACAAAATAAAAAAT
TTTGTGCATAGCAAAACGGAGTCATTTTATTCAAAATGA
Found at i:31768200 original size:255 final size:252
Alignment explanation
Indices: 31767723--31768234 Score: 771
Period size: 255 Copynumber: 2.0 Consensus size: 252
31767713 TAGAAACAAA
* * * *
31767723 ATAGCAAAACGGCGTCATTTTGTTCAAAATGAAATAATATTTTGCGGTGTTTTTCACAAAACGCC
1 ATAGCAAAACGGAGTCATTTTATTCAAAATGAAATAATATTTTGCGGCGTTTTTCAAAAAACGCC
* *
31767788 GCAAAAGATAAGCAATAGCGGCGTTTTCTATAAAAAAAACTGCAAAATATAAATAAAATTATAAA
66 GCAAAAGATAAGCAATAGCGGCGTTTTCTATAAAAAAAACTCCAAAAAATAAATAAAATTATAAA
*
31767853 AAATAAAAAAATTATTTGCATAGCAAAACGGCGTCATTTTGATCAAAATGAAATAACGGCGTTTT
131 AAATAAAAAAAATATTTGCATAGCAAAACGGCGTCATTTTGATCAAAATGAAATAACGGCGTTTT
31767918 CCATAAAAACGCCGCAAAAAATAAATCAATTTAAAAAACAAAATAAAAAATTTTGT-GC
196 CCATAAAAACGCCGCAAAAAATAAATCAATTTAAAAAA-AAAATAAAAAATTTT-TAGC
*
31767976 ATAGCAAAACGGAGTCATTTTATTCAAAATGAAATAATATTTTGCGGCGATTTTGT-AAAAAATG
1 ATAGCAAAACGGAGTCATTTTATTCAAAATGAAATAATATTTTGCGGCG-TTTT-TCAAAAAACG
* * * *
31768040 CCGCAAAAGATAAGCAATAGTGGTGTTTTCTATAAAAACATC-CCAAAAAATAAATAAAATTATA
64 CCGCAAAAGATAAGCAATAGCGGCGTTTTCTATAAAAAAAACTCCAAAAAATAAATAAAATTAT-
* *
31768104 AAAAAATAGAAAAAAATATTTGCATAGCAAAACGGCG-CTATTTTGTTCAAAATGAAATAGCGGC
128 AAAAAATA-AAAAAAATATTTGCATAGCAAAACGGCGTC-ATTTTGATCAAAATGAAATAACGGC
* * * *
31768168 GTTTTTCATAAAAATGCCGCAAAAAGTAAATCAATTTATAAAAAAAATAAAAAATTTTTAGC
191 GTTTTCCATAAAAACGCCGCAAAAAATAAATCAATTTAAAAAAAAAATAAAAAATTTTTAGC
31768230 ATAGC
1 ATAGC
31768235 GGCGTTTTTT
Statistics
Matches: 235, Mismatches: 18, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
253 66 0.28
254 79 0.34
255 90 0.38
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.27
Consensus pattern (252 bp):
ATAGCAAAACGGAGTCATTTTATTCAAAATGAAATAATATTTTGCGGCGTTTTTCAAAAAACGCC
GCAAAAGATAAGCAATAGCGGCGTTTTCTATAAAAAAAACTCCAAAAAATAAATAAAATTATAAA
AAATAAAAAAAATATTTGCATAGCAAAACGGCGTCATTTTGATCAAAATGAAATAACGGCGTTTT
CCATAAAAACGCCGCAAAAAATAAATCAATTTAAAAAAAAAATAAAAAATTTTTAGC
Found at i:31768754 original size:22 final size:22
Alignment explanation
Indices: 31768728--31768775 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
31768718 TGTAAATTTA
31768728 TTTTAGGGCAACTTTGAACCTT
1 TTTTAGGGCAACTTTGAACCTT
31768750 TTTTAGGGCAACTTTGAACCTT
1 TTTTAGGGCAACTTTGAACCTT
31768772 TTTT
1 TTTT
31768776 TTTGTCCTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.21, C:0.17, G:0.17, T:0.46
Consensus pattern (22 bp):
TTTTAGGGCAACTTTGAACCTT
Found at i:31770167 original size:42 final size:42
Alignment explanation
Indices: 31770086--31770168 Score: 107
Period size: 42 Copynumber: 2.0 Consensus size: 42
31770076 TTACATAACT
* *
31770086 TATATATTTTTAATATATAACTTAATAACTTATTAATATTTA
1 TATACATTTTTAATATATAACTTAAAAACTTATTAATATTTA
*
31770128 TATACATTTTTAATATATATA-TTAAAAATTTA-TATATATTT
1 TATACATTTTTAATATATA-ACTTAAAAACTTATTA-ATATTT
31770169 TTAATAACTT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
41 2 0.06
42 33 0.92
43 1 0.03
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (42 bp):
TATACATTTTTAATATATAACTTAAAAACTTATTAATATTTA
Found at i:31770172 original size:20 final size:19
Alignment explanation
Indices: 31770140--31770185 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
31770130 TACATTTTTA
*
31770140 ATATATATATTAAAAATTT
1 ATATATATATTAAAAACTT
* *
31770159 ATATATATTTTTAATAACTT
1 ATATATA-TATTAAAAACTT
31770179 ATATATA
1 ATATATA
31770186 ACTTTCATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (19 bp):
ATATATATATTAAAAACTT
Found at i:31770195 original size:20 final size:20
Alignment explanation
Indices: 31770157--31770219 Score: 65
Period size: 20 Copynumber: 3.1 Consensus size: 20
31770147 TATTAAAAAT
**
31770157 TTATATATATTTTTAATAAC
1 TTATATATAACTTTAATAAC
*
31770177 TTATATATAACTTTCATAAC
1 TTATATATAACTTTAATAAC
* *
31770197 TTACATAATAAC-ATAATAAC
1 TTATAT-ATAACTTTAATAAC
31770217 TTA
1 TTA
31770220 CATAATACAT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
20 31 0.86
21 5 0.14
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATATATAACTTTAATAAC
Found at i:31770197 original size:9 final size:9
Alignment explanation
Indices: 31770183--31770485 Score: 140
Period size: 9 Copynumber: 34.9 Consensus size: 9
31770173 TAACTTATAT
*
31770183 ATAACTTTC
1 ATAACTTAC
31770192 ATAACTTAC
1 ATAACTTAC
*
31770201 ATAA-TAAC
1 ATAACTTAC
31770209 ATAATAACTTAC
1 ---ATAACTTAC
31770221 ATAA--TAC
1 ATAACTTAC
* *
31770228 ATAGCCTAC
1 ATAACTTAC
* *
31770237 ATGACTTGC
1 ATAACTTAC
31770246 ATAA--TAC
1 ATAACTTAC
*
31770253 ACAACTTAC
1 ATAACTTAC
*
31770262 ATAACTTAA
1 ATAACTTAC
*
31770271 ATAAATTAC
1 ATAACTTAC
31770280 ATAA--TAC
1 ATAACTTAC
*
31770287 ATAACTTTC
1 ATAACTTAC
31770296 ATAACTTAC
1 ATAACTTAC
*
31770305 ATAAAAACTTAA
1 AT---AACTTAC
*
31770317 ATAAATTAC
1 ATAACTTAC
31770326 ATAA--TAC
1 ATAACTTAC
**
31770333 AT-TTTTA-
1 ATAACTTAC
* *
31770340 ATCACTTAT
1 ATAACTTAC
*
31770349 ATAAAACTTTC
1 AT--AACTTAC
31770360 ATAACTTAC
1 ATAACTTAC
31770369 ATAA--TAC
1 ATAACTTAC
* *
31770376 ATAGCCTAC
1 ATAACTTAC
*
31770385 ATGACTTAC
1 ATAACTTAC
31770394 ATAA--TAC
1 ATAACTTAC
* *
31770401 ACAACTTAA
1 ATAACTTAC
31770410 ATAACTTAC
1 ATAACTTAC
31770419 ATAA--TAC
1 ATAACTTAC
**
31770426 ATAACTTTG
1 ATAACTTAC
*
31770435 ATAGCTTAC
1 ATAACTTAC
*
31770444 ATTA--TAC
1 ATAACTTAC
* *
31770451 ACAACTTAT
1 ATAACTTAC
31770460 ATAACTTAC
1 ATAACTTAC
31770469 ATAACTTAC
1 ATAACTTAC
*
31770478 ATAGCTTA
1 ATAACTTA
31770486 ATTATACTTA
Statistics
Matches: 218, Mismatches: 49, Indels: 54
0.68 0.15 0.17
Matches are distributed among these distances:
7 49 0.22
8 8 0.04
9 140 0.64
11 10 0.05
12 11 0.05
ACGTcount: A:0.46, C:0.18, G:0.03, T:0.33
Consensus pattern (9 bp):
ATAACTTAC
Found at i:31770220 original size:20 final size:20
Alignment explanation
Indices: 31770170--31770230 Score: 72
Period size: 20 Copynumber: 3.1 Consensus size: 20
31770160 TATATATTTT
* *
31770170 TAATAACTTATAT-ATAACTT
1 TAATAACTTACATAATAAC-A
*
31770190 TCATAACTTACATAATAACA
1 TAATAACTTACATAATAACA
31770210 TAATAACTTACATAAT-ACA
1 TAATAACTTACATAATAACA
31770229 TA
1 TA
31770231 GCCTACATGA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
19 5 0.14
20 26 0.72
21 5 0.14
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TAATAACTTACATAATAACA
Found at i:31770262 original size:25 final size:25
Alignment explanation
Indices: 31770191--31770472 Score: 115
Period size: 25 Copynumber: 11.6 Consensus size: 25
31770181 ATATAACTTT
31770191 CATAACTTACATAATA-AC-A--TA
1 CATAACTTACATAATACACAACCTA
* *
31770212 -ATAACTTACATAATACATAGCCTA
1 CATAACTTACATAATACACAACCTA
* * *
31770236 CATGACTTGCATAATACACAACTTA
1 CATAACTTACATAATACACAACCTA
* *
31770261 CATAACTTAAATAAATTACATAA--TA
1 CATAACTTACAT-AA-TACACAACCTA
* * *
31770286 CATAACTTTCATAACTTACATAAAAACTTA
1 CATAACTTACATAA--TAC---ACAACCTA
* * ****
31770316 AATAAATTACATAATACA-TTTTTA
1 CATAACTTACATAATACACAACCTA
* * *
31770340 -ATCACTT--AT-ATA-A-AACTTT
1 CATAACTTACATAATACACAACCTA
* *
31770359 CATAACTTACATAATACATAGCCTA
1 CATAACTTACATAATACACAACCTA
* *
31770384 CATGACTTACATAATACACAACTTA
1 CATAACTTACATAATACACAACCTA
* * * *
31770409 AATAACTTACATAATACATAACTTT
1 CATAACTTACATAATACACAACCTA
* * * *
31770434 GATAGCTTACATTATACACAACTTA
1 CATAACTTACATAATACACAACCTA
*
31770459 TATAACTTACATAA
1 CATAACTTACATAA
31770473 CTTACATAGC
Statistics
Matches: 196, Mismatches: 46, Indels: 34
0.71 0.17 0.12
Matches are distributed among these distances:
19 3 0.02
20 24 0.12
21 3 0.02
22 2 0.01
23 8 0.04
24 8 0.04
25 121 0.62
26 2 0.01
27 6 0.03
28 6 0.03
30 13 0.07
ACGTcount: A:0.46, C:0.18, G:0.02, T:0.33
Consensus pattern (25 bp):
CATAACTTACATAATACACAACCTA
Found at i:31770268 original size:50 final size:50
Alignment explanation
Indices: 31770211--31770482 Score: 204
Period size: 50 Copynumber: 5.4 Consensus size: 50
31770201 ATAATAACAT
*
31770211 AATAACTTACATAATACATAGCCTACATGACTTGCATAATACACAACTTA
1 AATAACTTACATAATACATAGCCTACATGACTTACATAATACACAACTTA
* * * * * *
31770261 CATAACTTAAATAAATTACATA--ATACATAACTTTCATAACTTACATAAAAACTTA
1 AATAACTTACAT-AA-TACATAGCCTACATGACTTACATAA--TAC---ACAACTTA
* *** * *
31770316 AATAAATTACATAATACAT-TTTTA-ATCACTT--AT-ATA-A-AACTTT
1 AATAACTTACATAATACATAGCCTACATGACTTACATAATACACAACTTA
*
31770359 CATAACTTACATAATACATAGCCTACATGACTTACATAATACACAACTTA
1 AATAACTTACATAATACATAGCCTACATGACTTACATAATACACAACTTA
* * ** *
31770409 AATAACTTACATAATACATAACTTTGAT-AGCTTACATTATACACAACTTA
1 AATAACTTACATAATACATAGCCTACATGA-CTTACATAATACACAACTTA
*
31770459 TATAACTTACATAACTTACATAGC
1 AATAACTTACATAA--TACATAGC
31770483 TTAATTATAC
Statistics
Matches: 176, Mismatches: 27, Indels: 36
0.74 0.11 0.15
Matches are distributed among these distances:
43 22 0.12
44 3 0.02
45 6 0.03
47 2 0.01
48 5 0.03
49 2 0.01
50 85 0.48
51 4 0.02
52 16 0.09
53 11 0.06
54 4 0.02
55 16 0.09
ACGTcount: A:0.46, C:0.19, G:0.03, T:0.33
Consensus pattern (50 bp):
AATAACTTACATAATACATAGCCTACATGACTTACATAATACACAACTTA
Found at i:31770283 original size:34 final size:34
Alignment explanation
Indices: 31770245--31770309 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
31770235 ACATGACTTG
31770245 CATAATACACAACTTACATAACTTAAATAAATTA
1 CATAATACACAACTTACATAACTTAAATAAATTA
* * *
31770279 CATAATACATAACTTTCATAACTTACATAAA
1 CATAATACACAACTTACATAACTTAAATAAA
31770310 AACTTAAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.51, C:0.18, G:0.00, T:0.31
Consensus pattern (34 bp):
CATAATACACAACTTACATAACTTAAATAAATTA
Found at i:31770429 original size:16 final size:16
Alignment explanation
Indices: 31770359--31770432 Score: 53
Period size: 16 Copynumber: 4.5 Consensus size: 16
31770349 ATAAAACTTT
31770359 CATAACTTACATAATA
1 CATAACTTACATAATA
* * *
31770375 CATAGCCTACATGACTTA
1 CATAACTTACAT-A-ATA
*
31770393 CATAA--TACACAACTTA
1 CATAACTTACATAA--TA
*
31770409 AATAACTTACATAATA
1 CATAACTTACATAATA
31770425 CATAACTT
1 CATAACTT
31770433 TGATAGCTTA
Statistics
Matches: 43, Mismatches: 9, Indels: 12
0.67 0.14 0.19
Matches are distributed among these distances:
15 1 0.02
16 29 0.67
17 1 0.02
18 12 0.28
ACGTcount: A:0.46, C:0.22, G:0.03, T:0.30
Consensus pattern (16 bp):
CATAACTTACATAATA
Found at i:31773873 original size:50 final size:49
Alignment explanation
Indices: 31773816--31773913 Score: 135
Period size: 50 Copynumber: 2.0 Consensus size: 49
31773806 GTGTCTAGGC
* *
31773816 CGTGTAACACCCTGTTTTGGATTT-AGAATCAGACGGGCTAGGGACACGGT
1 CGTGTAACACACTGTTTTGGATTTAAG-ATCACACGGGCTAGGG-CACGGT
* *
31773866 CGTGTAACTCACTGTTTTGGATTTAAGGTCACACGGGCTAGGGCACGG
1 CGTGTAACACACTGTTTTGGATTTAAGATCACACGGGCTAGGGCACGG
31773914 ATGTGTGCCC
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
49 5 0.12
50 36 0.84
51 2 0.05
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.27
Consensus pattern (49 bp):
CGTGTAACACACTGTTTTGGATTTAAGATCACACGGGCTAGGGCACGGT
Found at i:31777598 original size:57 final size:57
Alignment explanation
Indices: 31777482--31777599 Score: 193
Period size: 57 Copynumber: 2.1 Consensus size: 57
31777472 ATAAAACATT
*
31777482 CTCTTCTTCATTCTAAACCCTAAAGAATCGGCCACCATTACAGTCTGTTGCGTCGAA
1 CTCTTCTTCATTCTAAACCCTAAAGAATCGGCCACCATTACAGTCTGTTGCGTCAAA
* *
31777539 CTCTTCTTCATTCTAAACCCTAAAGAA-CTGGCCACCATTACAGTCTGTTGTGTTAAA
1 CTCTTCTTCATTCTAAACCCTAAAGAATC-GGCCACCATTACAGTCTGTTGCGTCAAA
31777596 CTCT
1 CTCT
31777600 CTATTAATTG
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
56 1 0.02
57 56 0.98
ACGTcount: A:0.26, C:0.29, G:0.13, T:0.32
Consensus pattern (57 bp):
CTCTTCTTCATTCTAAACCCTAAAGAATCGGCCACCATTACAGTCTGTTGCGTCAAA
Found at i:31781756 original size:13 final size:13
Alignment explanation
Indices: 31781738--31781764 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
31781728 TGAGAAACAC
31781738 TTTACACTAAGTT
1 TTTACACTAAGTT
31781751 TTTACACTAAGTT
1 TTTACACTAAGTT
31781764 T
1 T
31781765 AGCAAGTGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.07, T:0.48
Consensus pattern (13 bp):
TTTACACTAAGTT
Found at i:31784035 original size:21 final size:20
Alignment explanation
Indices: 31784005--31784046 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
31783995 CATCAATAAC
*
31784005 TAAGTCTTTGTATCTGTGGT
1 TAAGTCTTTGTATATGTGGT
*
31784025 TAAGTGCTTTGTTTATGTGGT
1 TAAGT-CTTTGTATATGTGGT
31784046 T
1 T
31784047 GAGATTGGGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.14, C:0.07, G:0.26, T:0.52
Consensus pattern (20 bp):
TAAGTCTTTGTATATGTGGT
Found at i:31784386 original size:23 final size:22
Alignment explanation
Indices: 31784343--31784386 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
31784333 ACCGTTTCTT
* *
31784343 TTTCTTTCCTTTTTTTTCCTCA
1 TTTCTTTCCTTTTTCTACCTCA
*
31784365 TTTCTTTTCTTTTTGCTACCTC
1 TTTCTTTCCTTTTT-CTACCTC
31784387 CTTGATTTCT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.05, C:0.27, G:0.02, T:0.66
Consensus pattern (22 bp):
TTTCTTTCCTTTTTCTACCTCA
Found at i:31794894 original size:31 final size:29
Alignment explanation
Indices: 31794840--31794925 Score: 81
Period size: 29 Copynumber: 3.0 Consensus size: 29
31794830 TTTAGGGATA
31794840 AATTTTA-A-AATTATATAT-T-AATTTT
1 AATTTTATATAATTATATATATAAATTTT
* *
31794865 AATTTAATGTGTAATTATATATATAAATTTT
1 AATTT--TATATAATTATATATATAAATTTT
* *
31794896 GATTTTATATAATTTTATATATAAAATTTT
1 AATTTTATATAATTATATATAT-AAATTTT
31794926 GTTTTAATTC
Statistics
Matches: 48, Mismatches: 6, Indels: 9
0.76 0.10 0.14
Matches are distributed among these distances:
25 5 0.10
27 1 0.02
29 24 0.50
30 8 0.17
31 10 0.21
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (29 bp):
AATTTTATATAATTATATATATAAATTTT
Found at i:31794906 original size:17 final size:17
Alignment explanation
Indices: 31794884--31794931 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 17
31794874 TGTAATTATA
31794884 TATATAAATTTTGATTT
1 TATATAAATTTTGATTT
*
31794901 TATAT-AATTTT-A-TA
1 TATATAAATTTTGATTT
31794915 TATA-AAATTTTG-TTT
1 TATATAAATTTTGATTT
31794930 TA
1 TA
31794932 ATTCAACTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
14 11 0.42
15 4 0.15
16 6 0.23
17 5 0.19
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (17 bp):
TATATAAATTTTGATTT
Found at i:31794908 original size:29 final size:29
Alignment explanation
Indices: 31794876--31794931 Score: 87
Period size: 29 Copynumber: 1.9 Consensus size: 29
31794866 ATTTAATGTG
31794876 TAATTATATATAT-AAATTTTGATTTTATA
1 TAATTATATATATAAAATTTTG-TTTTATA
*
31794905 TAATTTTATATATAAAATTTTGTTTTA
1 TAATTATATATATAAAATTTTGTTTTA
31794932 ATTCAACTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 17 0.68
30 8 0.32
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (29 bp):
TAATTATATATATAAAATTTTGTTTTATA
Found at i:31801383 original size:23 final size:23
Alignment explanation
Indices: 31801357--31801411 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
31801347 TTAAATATTT
31801357 TTAAATTAAAAAATA-AAATTGCA
1 TTAAATTAAAAAATATAAATT-CA
* *
31801380 TTAAATATTAAAAATATACATTCA
1 TTAAAT-TAAAAAATATAAATTCA
31801404 -TAAATTAA
1 TTAAATTAA
31801412 TAATTAACTT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
22 2 0.07
23 11 0.41
24 10 0.37
25 4 0.15
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (23 bp):
TTAAATTAAAAAATATAAATTCA
Found at i:31806945 original size:45 final size:45
Alignment explanation
Indices: 31806869--31806984 Score: 133
Period size: 45 Copynumber: 2.6 Consensus size: 45
31806859 TACTACGTGT
* * * * *
31806869 ACCGGGTACCATTGATTATAAAGGTGGTTGCTGCGTGTTGATTCC
1 ACCGAGTACCATTGATTATAAAGGTGATTGCTACGTGCTAATTCC
* *
31806914 ACCGAGTACTATTGATTATGAAGGTGATTGCTACGTGCTAATTCC
1 ACCGAGTACCATTGATTATAAAGGTGATTGCTACGTGCTAATTCC
* * * *
31806959 ATCGAGTATCATTGACTATAAGGGTG
1 ACCGAGTACCATTGATTATAAAGGTG
31806985 GTGCTATGTG
Statistics
Matches: 58, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 58 1.00
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (45 bp):
ACCGAGTACCATTGATTATAAAGGTGATTGCTACGTGCTAATTCC
Found at i:31809315 original size:23 final size:23
Alignment explanation
Indices: 31809289--31809341 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
31809279 CTAAGGTATT
*
31809289 TTAAGTAAAAAAATTTTGATTTA
1 TTAAGCAAAAAAATTTTGATTTA
*
31809312 TTAAGCATAAAAATTTTGATTTA
1 TTAAGCAAAAAAATTTTGATTTA
31809335 TTAAGCA
1 TTAAGCA
31809342 TATTAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.45, C:0.04, G:0.09, T:0.42
Consensus pattern (23 bp):
TTAAGCAAAAAAATTTTGATTTA
Found at i:31809342 original size:23 final size:23
Alignment explanation
Indices: 31809297--31809343 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
31809287 TTTTAAGTAA
31809297 AAAAATTTTGATTTATTAAGCAT
1 AAAAATTTTGATTTATTAAGCAT
31809320 AAAAATTTTGATTTATTAAGCAT
1 AAAAATTTTGATTTATTAAGCAT
31809343 A
1 A
31809344 TTAAATAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.45, C:0.04, G:0.09, T:0.43
Consensus pattern (23 bp):
AAAAATTTTGATTTATTAAGCAT
Found at i:31810181 original size:14 final size:14
Alignment explanation
Indices: 31810162--31810192 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
31810152 AATTTATATG
31810162 TTTATAAATCCATT
1 TTTATAAATCCATT
31810176 TTTATAAATCCATT
1 TTTATAAATCCATT
31810190 TTT
1 TTT
31810193 CCCCAAAGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.32, C:0.13, G:0.00, T:0.55
Consensus pattern (14 bp):
TTTATAAATCCATT
Found at i:31810541 original size:18 final size:18
Alignment explanation
Indices: 31810515--31810549 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
31810505 GGTCGGGTCG
*
31810515 AGGAGGGCGATGCAACAT
1 AGGAAGGCGATGCAACAT
31810533 AGGAAGGCGATGCAACA
1 AGGAAGGCGATGCAACA
31810550 GATGGGTTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.17, G:0.37, T:0.09
Consensus pattern (18 bp):
AGGAAGGCGATGCAACAT
Found at i:31810743 original size:40 final size:40
Alignment explanation
Indices: 31810668--31810745 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
31810658 AAAACAAAAT
* * *
31810668 GACCTTTTACGGCGTTTTTCTCCTAGAGCCTCTAATGCTC
1 GACCTTTTACGGCGTTTTTCACCTAGACCCGCTAATGCTC
* *
31810708 GACCTTTTGCGGCGTTTTTCACCTAGCCCCGCTAATGC
1 GACCTTTTACGGCGTTTTTCACCTAGACCCGCTAATGC
31810746 CACTAAAAAC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.14, C:0.32, G:0.19, T:0.35
Consensus pattern (40 bp):
GACCTTTTACGGCGTTTTTCACCTAGACCCGCTAATGCTC
Found at i:31811118 original size:14 final size:14
Alignment explanation
Indices: 31811101--31811160 Score: 59
Period size: 14 Copynumber: 4.4 Consensus size: 14
31811091 ACTCTTAATA
*
31811101 CTAAATCATAAACC
1 CTAAACCATAAACC
*
31811115 CTAAACCTTAAACC
1 CTAAACCATAAACC
*
31811129 CCAAACCATAAA-C
1 CTAAACCATAAACC
* * *
31811142 CTACACCCTAAATC
1 CTAAACCATAAACC
31811156 CTAAA
1 CTAAA
31811161 TATATTATAA
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
13 10 0.27
14 27 0.73
ACGTcount: A:0.47, C:0.35, G:0.00, T:0.18
Consensus pattern (14 bp):
CTAAACCATAAACC
Found at i:31811119 original size:7 final size:7
Alignment explanation
Indices: 31811109--31811160 Score: 52
Period size: 7 Copynumber: 7.6 Consensus size: 7
31811099 TACTAAATCA
31811109 TAAACCC
1 TAAACCC
*
31811116 TAAACCT
1 TAAACCC
31811123 TAAACCC
1 TAAACCC
* *
31811130 CAAACCA
1 TAAACCC
31811137 TAAA-CC
1 TAAACCC
*
31811143 TACACCC
1 TAAACCC
*
31811150 TAAATCC
1 TAAACCC
31811157 TAAA
1 TAAA
31811161 TATATTATAA
Statistics
Matches: 35, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
6 4 0.11
7 31 0.89
ACGTcount: A:0.46, C:0.37, G:0.00, T:0.17
Consensus pattern (7 bp):
TAAACCC
Found at i:31811134 original size:21 final size:20
Alignment explanation
Indices: 31811110--31811160 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
31811100 ACTAAATCAT
31811110 AAACCCTAAACCTTAAACCCC
1 AAACCCTAAACC-TAAACCCC
* * *
31811131 AAACCATAAACCTACACCCT
1 AAACCCTAAACCTAAACCCC
*
31811151 AAATCCTAAA
1 AAACCCTAAA
31811161 TATATTATAA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 14 0.56
21 11 0.44
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.16
Consensus pattern (20 bp):
AAACCCTAAACCTAAACCCC
Found at i:31811347 original size:21 final size:21
Alignment explanation
Indices: 31811323--31811369 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
31811313 TATAAAATAA
*
31811323 TAAACCCCAAACCCTAAACTC
1 TAAACCACAAACCCTAAACTC
*
31811344 TAAACCATAAACCCTAAACTC
1 TAAACCACAAACCCTAAACTC
*
31811365 AAAAC
1 TAAAC
31811370 TCTAATCCCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.49, C:0.36, G:0.00, T:0.15
Consensus pattern (21 bp):
TAAACCACAAACCCTAAACTC
Found at i:31811348 original size:14 final size:14
Alignment explanation
Indices: 31811331--31811374 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
31811321 AATAAACCCC
31811331 AAACCCTAAACTCT
1 AAACCCTAAACTCT
* *
31811345 AAACCATAAACCCT
1 AAACCCTAAACTCT
* *
31811359 AAACTCAAAACTCT
1 AAACCCTAAACTCT
31811373 AA
1 AA
31811375 TCCCAAAATA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.50, C:0.32, G:0.00, T:0.18
Consensus pattern (14 bp):
AAACCCTAAACTCT
Found at i:31811453 original size:21 final size:21
Alignment explanation
Indices: 31811399--31811455 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
31811389 ACATTATATC
31811399 ATAAACCCTAAAACCTTGAACT
1 ATAAACCCT-AAACCTTGAACT
** *
31811421 ATAAACATTAAACCTT-AATT
1 ATAAACCCTAAACCTTGAACT
31811441 ACTAAACCCTAAACC
1 A-TAAACCCTAAACC
31811456 CAAAAATAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
20 4 0.14
21 18 0.62
22 7 0.24
ACGTcount: A:0.47, C:0.26, G:0.02, T:0.25
Consensus pattern (21 bp):
ATAAACCCTAAACCTTGAACT
Found at i:31811706 original size:115 final size:115
Alignment explanation
Indices: 31811487--31811709 Score: 286
Period size: 116 Copynumber: 1.9 Consensus size: 115
31811477 CGACGTTTTT
* * * * * * * *
31811487 AAGCTCAATAACAAACGACGTTGTTTTCTTAACTTTTTTGCGGCGTTTTTCAACAAGCGCCGCTA
1 AAGCTCAAAAACAAACAACGTCGTTTTCTCAACTTTTTTGCGACGTTTCTAAAAAAGCGCCGCTA
* **
31811552 ATTCTCAATCTATTGCGACATTTTTTTAAAAAGCGCCGCTAATGCCACTA
66 ATGCTCAATCTATAACGACATTTTTTTAAAAAGCGCCGCTAATGCCACTA
*
31811602 AAGCTCAAAAACAAACAACGTCGTTTTGCTCAACTTTTTTGCGATGTTTCTAAAAAAGCGCCGCT
1 AAGCTCAAAAACAAACAACGTCGTTTT-CTCAACTTTTTTGCGACGTTTCTAAAAAAGCGCCGCT
* * * *
31811667 AATGCTCGATCTATAATGACA-TTTTTTGACAAGCGCCGCTAAT
65 AATGCTCAATCTATAACGACATTTTTTTAAAAAGCGCCGCTAAT
31811710 TCTCGATCTA
Statistics
Matches: 91, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
115 44 0.48
116 47 0.52
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (115 bp):
AAGCTCAAAAACAAACAACGTCGTTTTCTCAACTTTTTTGCGACGTTTCTAAAAAAGCGCCGCTA
ATGCTCAATCTATAACGACATTTTTTTAAAAAGCGCCGCTAATGCCACTA
Found at i:31811837 original size:40 final size:40
Alignment explanation
Indices: 31811793--31811902 Score: 116
Period size: 40 Copynumber: 2.8 Consensus size: 40
31811783 CAATTTTTTT
*
31811793 GCGGCCTTTTCCAAAAAGCACCGCTAATGCTCGATCTATA
1 GCGGCATTTTCCAAAAAGCACCGCTAATGCTCGATCTATA
* * *
31811833 GCGGCATTTTGCAAATAACGTA--GCTAATGCTCGATCTATT
1 GCGGCATTTTCCAAA-AA-GCACCGCTAATGCTCGATCTATA
* ** *
31811873 GCGGCGTTTTTTAAAAAGCGCCGCTAATGC
1 GCGGCATTTTCCAAAAAGCACCGCTAATGC
31811903 CACTAAAGCT
Statistics
Matches: 57, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
38 1 0.02
39 2 0.04
40 50 0.88
41 2 0.04
42 2 0.04
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (40 bp):
GCGGCATTTTCCAAAAAGCACCGCTAATGCTCGATCTATA
Found at i:31811995 original size:154 final size:154
Alignment explanation
Indices: 31811548--31812056 Score: 584
Period size: 151 Copynumber: 3.3 Consensus size: 154
31811538 AACAAGCGCC
* * * * *
31811548 GCTAATTCTCAATCTATTGCGACATTTTTTTAAAAAGCGCCGCTAATGCCACTAAAGCTCAAAAA
1 GCTAATGCTCGATCTATTGCGGCA-TTTTTTAAAAAGCACCGCTAATGCCACTAAAGCTCAACAA
* * *
31811613 CAAACAACGTCGTTTTGCTCAACTTTTTTGCGATG-TTTCTAAAAAAGCGCCGCTAATGCTCGAT
65 CGAACGACGTCGTTTTGCTCAACTTTTTTGCGATGTTTTCT-AAAAAGCACCGCTAATGCTCGAT
** * * * **
31811677 CTATAATGACATTTTTTG-ACAAGCGCC
129 CTATAGCGGCA--TTTTGCAAAAACGTA
* * * *
31811704 GCTAATTCTCGATCTATTGCGGCATTTTTTAAAAATCACCACTAATGCCACTAAAGCTTAACAAC
1 GCTAATGCTCGATCTATTGCGGCATTTTTTAAAAAGCACCGCTAATGCCACTAAAGCTCAACAAC
* * *** *
31811769 G---G-CATCGTTTTGCTCAATTTTTTTGCGGCCTTTTCCAAAAAGCACCGCTAATGCTCGATCT
66 GAACGACGTCGTTTTGCTCAACTTTTTTGCGATGTTTTCTAAAAAGCACCGCTAATGCTCGATCT
31811830 ATAGCGGCATTTTGCAAATAACGTA
131 ATAGCGGCATTTTGCAAA-AACGTA
* *
31811855 GCTAATGCTCGATCTATTGCGGCGTTTTTTAAAAAGCGCCGCTAATGCCACTAAAGCTCAACAAC
1 GCTAATGCTCGATCTATTGCGGCATTTTTTAAAAAGCACCGCTAATGCCACTAAAGCTCAACAAC
* * *
31811920 GAACGACGT-GTTTTGCTCAACTTTTTTACGATGTTTTCTGAAAAGCATCGCTAATGCTCGATCT
66 GAACGACGTCGTTTTGCTCAACTTTTTTGCGATGTTTTCTAAAAAGCACCGCTAATGCTCGATCT
*
31811984 ATAGCGGCATTTTTCAAAAAGCGCTA
131 ATAGCGGCATTTTGCAAAAA-CG-TA
* * * *
31812010 -CTAATGCTTGATCTATAGCGGCATTTTTCAGAAAGCACCGCTAATGC
1 GCTAATGCTCGATCTATTGCGGCATTTTTTAAAAAGCACCGCTAATGC
31812057 TCAACCTTTT
Statistics
Matches: 299, Mismatches: 45, Indels: 20
0.82 0.12 0.05
Matches are distributed among these distances:
149 5 0.02
150 2 0.01
151 116 0.39
152 4 0.01
153 2 0.01
154 108 0.36
155 40 0.13
156 22 0.07
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (154 bp):
GCTAATGCTCGATCTATTGCGGCATTTTTTAAAAAGCACCGCTAATGCCACTAAAGCTCAACAAC
GAACGACGTCGTTTTGCTCAACTTTTTTGCGATGTTTTCTAAAAAGCACCGCTAATGCTCGATCT
ATAGCGGCATTTTGCAAAAACGTA
Done.