Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56598092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1600000 characters in sequence are not A, C, G, or T
File 103 of 185
Found at i:32578545 original size:18 final size:18
Alignment explanation
Indices: 32578522--32578562 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
32578512 TATGATTTGC
32578522 ATGTTAAGCATATTGACT
1 ATGTTAAGCATATTGACT
*
32578540 ATGTTAAGCATGTTGACT
1 ATGTTAAGCATATTGACT
32578558 ATGTT
1 ATGTT
32578563 GACTATAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (18 bp):
ATGTTAAGCATATTGACT
Found at i:32578585 original size:33 final size:33
Alignment explanation
Indices: 32578548--32578619 Score: 117
Period size: 33 Copynumber: 2.2 Consensus size: 33
32578538 CTATGTTAAG
*
32578548 CATGTTGACTATGTTGACTATAAATTTGATTCA
1 CATGTTGACTATGTTGACTATAAATCTGATTCA
* *
32578581 CATGTTGACTGTGTTGACTATAAATCTGATTCG
1 CATGTTGACTATGTTGACTATAAATCTGATTCA
32578614 CATGTT
1 CATGTT
32578620 AAGCATGCCC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (33 bp):
CATGTTGACTATGTTGACTATAAATCTGATTCA
Found at i:32578852 original size:63 final size:63
Alignment explanation
Indices: 32578785--32578934 Score: 203
Period size: 63 Copynumber: 2.4 Consensus size: 63
32578775 AACTTATCTG
* * * *
32578785 CAATATTGAGTGGCGTGGCCACAACATTATTGAATGGCTTT-TCCAGAATGTGCAGCTTGTCTA
1 CAATATTGAGTGGCTTGGCCACAACATTATTGAATAG-TTTGACCACAATGTGCAGCTTGTCTA
* * * *
32578848 CAATATTGAGTGGCTTAGCCCCAACATTATTGAGTAGTTTGACCACAATGTGCAGCTTGTCTG
1 CAATATTGAGTGGCTTGGCCACAACATTATTGAATAGTTTGACCACAATGTGCAGCTTGTCTA
*
32578911 CTATATTGAGTGGCTTGGCCACAA
1 CAATATTGAGTGGCTTGGCCACAA
32578935 TGTGGTGTCT
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
62 3 0.04
63 72 0.96
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.31
Consensus pattern (63 bp):
CAATATTGAGTGGCTTGGCCACAACATTATTGAATAGTTTGACCACAATGTGCAGCTTGTCTA
Found at i:32584586 original size:23 final size:24
Alignment explanation
Indices: 32584560--32584610 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
32584550 AACATGCCAA
* *
32584560 TTTT-AAATAAAAGAGATAACAAT
1 TTTTGAAACAAAAGAGATAAAAAT
* *
32584583 TTTTGAAACAAAATAGCTAAAAAT
1 TTTTGAAACAAAAGAGATAAAAAT
32584607 TTTT
1 TTTT
32584611 CACGCCATTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
23 4 0.17
24 19 0.83
ACGTcount: A:0.51, C:0.06, G:0.08, T:0.35
Consensus pattern (24 bp):
TTTTGAAACAAAAGAGATAAAAAT
Found at i:32588305 original size:60 final size:60
Alignment explanation
Indices: 32588123--32588305 Score: 176
Period size: 60 Copynumber: 3.1 Consensus size: 60
32588113 GTAACGGGAA
* * * *
32588123 TGAT-CCTGGTCTCAATGATAATATGAATGGCCAAGATGTTAATCC-CCTATTCGTAGGG
1 TGATACCTGGTCTAAATGATAATATGAATGGTCAGGATGTTGATCCTCCTATTCGTAGGG
** * * ** * * *
32588181 TGATGTCTAGTCTGAATGATAACCTGAATGGTCAGGACAG-TGATCCTCCTGTTTGTAGGG
1 TGATACCTGGTCTAAATGATAATATGAATGGTCAGGA-TGTTGATCCTCCTATTCGTAGGG
* * *
32588241 TGATACCTGGTCTAAATGATAATTTGAATGGTTAGGATGTTGATCCTCATATTCAG-AGGG
1 TGATACCTGGTCTAAATGATAATATGAATGGTCAGGATGTTGATCCTCCTATTC-GTAGGG
32588301 TGATA
1 TGATA
32588306 GATGACCGAG
Statistics
Matches: 98, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
58 4 0.04
59 31 0.32
60 62 0.63
61 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (60 bp):
TGATACCTGGTCTAAATGATAATATGAATGGTCAGGATGTTGATCCTCCTATTCGTAGGG
Found at i:32601000 original size:27 final size:27
Alignment explanation
Indices: 32600970--32601197 Score: 173
Period size: 27 Copynumber: 8.6 Consensus size: 27
32600960 ATATTGAGTC
* *
32600970 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
32600997 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
32601024 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
32601052 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
32601079 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* **
32601106 CG--CAC--AGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* **
32601129 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
32601156 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
32601183 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32601198 GTACAATTTA
Statistics
Matches: 175, Mismatches: 19, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
23 20 0.11
25 6 0.03
27 125 0.71
28 24 0.14
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:32601114 original size:23 final size:23
Alignment explanation
Indices: 32601088--32601161 Score: 112
Period size: 23 Copynumber: 3.0 Consensus size: 23
32601078 TCGCACACTT
32601088 AGTGCATCATATTCATTTCGCAC
1 AGTGCATCATATTCATTTCGCAC
32601111 AGTGCATCATATTCATTTCGCACAC
1 AGTGCATCATATTCATTTCG--CAC
32601136 TTAGTGCATCATATTCATTTCGCAC
1 --AGTGCATCATATTCATTTCGCAC
32601161 A
1 A
32601162 CTTAGTGCAA
Statistics
Matches: 47, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
23 21 0.45
25 6 0.13
27 20 0.43
ACGTcount: A:0.27, C:0.26, G:0.12, T:0.35
Consensus pattern (23 bp):
AGTGCATCATATTCATTTCGCAC
Found at i:32611567 original size:20 final size:20
Alignment explanation
Indices: 32611542--32611599 Score: 53
Period size: 20 Copynumber: 2.9 Consensus size: 20
32611532 TGAAGAAGTG
32611542 CCCCTGTTTGTACTTCGGTA
1 CCCCTGTTTGTACTTCGGTA
** ** * * *
32611562 CCCCTGGATACACATCTGTG
1 CCCCTGTTTGTACTTCGGTA
32611582 CCCCTGTTTGTACTTCGG
1 CCCCTGTTTGTACTTCGG
32611600 CGCCCTGGAA
Statistics
Matches: 25, Mismatches: 13, Indels: 0
0.66 0.34 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.12, C:0.33, G:0.21, T:0.34
Consensus pattern (20 bp):
CCCCTGTTTGTACTTCGGTA
Found at i:32611616 original size:40 final size:39
Alignment explanation
Indices: 32611539--32611627 Score: 117
Period size: 40 Copynumber: 2.2 Consensus size: 39
32611529 AAATGAAGAA
*
32611539 GTGCCCCTGTTTGTACTTCGGTACCCCTGGATACACATCT
1 GTGCCCCTGTTTGTACTTCGG-ACCCCTGGAAACACATCT
*
32611579 GTGCCCCTGTTTGTACTTCGG-CGCCCTGGAAAGCACATTT
1 GTGCCCCTGTTTGTACTTCGGAC-CCCTGGAAA-CACATCT
*
32611619 GTGTCCCTG
1 GTGCCCCTG
32611628 ATCGCACATT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 8 0.18
40 35 0.80
ACGTcount: A:0.13, C:0.31, G:0.24, T:0.31
Consensus pattern (39 bp):
GTGCCCCTGTTTGTACTTCGGACCCCTGGAAACACATCT
Found at i:32611636 original size:20 final size:20
Alignment explanation
Indices: 32611611--32611658 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
32611601 GCCCTGGAAA
32611611 GCACATTTGTG-TCCCTGATC
1 GCACATTTGTGCT-CCTGATC
* *
32611631 GCACATTCGTGCTCCTGATT
1 GCACATTTGTGCTCCTGATC
32611651 GCAC-TTTG
1 GCACATTTG
32611659 GCGCCCCTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 3 0.12
20 20 0.83
21 1 0.04
ACGTcount: A:0.15, C:0.29, G:0.21, T:0.35
Consensus pattern (20 bp):
GCACATTTGTGCTCCTGATC
Found at i:32612747 original size:18 final size:18
Alignment explanation
Indices: 32612720--32612761 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
32612710 TGCTAGAATA
*
32612720 AATTAATTAAGTT-AGTTT
1 AATTAATTAA-TTCAGCTT
*
32612738 AATTAGTTAATTCAGCTT
1 AATTAATTAATTCAGCTT
32612756 AATTAA
1 AATTAA
32612762 ATGTTGAGTA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 2 0.10
18 18 0.90
ACGTcount: A:0.40, C:0.05, G:0.10, T:0.45
Consensus pattern (18 bp):
AATTAATTAATTCAGCTT
Found at i:32617259 original size:12 final size:12
Alignment explanation
Indices: 32617242--32617271 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
32617232 GTGGGTAGTT
32617242 ACACGGCCTAGC
1 ACACGGCCTAGC
*
32617254 ACACGGCCTGGC
1 ACACGGCCTAGC
32617266 ACACGG
1 ACACGG
32617272 GCGTGTGGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.40, G:0.30, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:32620310 original size:24 final size:24
Alignment explanation
Indices: 32620283--32620337 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
32620273 ACATTCTCGC
*
32620283 ACTTATCTTAACATACTTATCTTA
1 ACTTATCTTAACACACTTATCTTA
**
32620307 ACTTGGCTTAACACACTTATCTTA
1 ACTTATCTTAACACACTTATCTTA
*
32620331 TCTTATC
1 ACTTATC
32620338 AGTTACATAT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.29, C:0.24, G:0.04, T:0.44
Consensus pattern (24 bp):
ACTTATCTTAACACACTTATCTTA
Found at i:32622079 original size:50 final size:50
Alignment explanation
Indices: 32622017--32622195 Score: 216
Period size: 50 Copynumber: 3.6 Consensus size: 50
32622007 CAATGACATA
* ** * * * * *
32622017 TCCCAGATATGGTCTTACATGGGAGTTCTAATATCGGTGCCCATGCTATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
*
32622067 TCCCAGACATGGTCTTAC-GGGGAACCTCTCATCTCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGGG-ACCTCTCATCTCGGTGCCAACGCCATG
* * *
32622117 TCCAAGACATGGCCTTACATGGGACCTCTCATCTCGGTGCTAACGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
* *
32622167 TCCTAGACATGGTCTTACATGGGATCTCT
1 TCCCAGACATGGTCTTACATGGGACCTCT
32622196 TTACCCAAAT
Statistics
Matches: 111, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
49 3 0.03
50 105 0.95
51 3 0.03
ACGTcount: A:0.21, C:0.28, G:0.23, T:0.27
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
Found at i:32624199 original size:27 final size:28
Alignment explanation
Indices: 32624158--32624219 Score: 108
Period size: 27 Copynumber: 2.2 Consensus size: 28
32624148 TTCGTAACTT
*
32624158 AACTGGCGAACCCCCAAGTCACCAAACA
1 AACTGGCGAACCCCCAACTCACCAAACA
32624186 AACTGGCGAA-CCCCAACTCACCAAACA
1 AACTGGCGAACCCCCAACTCACCAAACA
32624213 AACTGGC
1 AACTGGC
32624220 TTTTTTTAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 23 0.70
28 10 0.30
ACGTcount: A:0.39, C:0.39, G:0.15, T:0.08
Consensus pattern (28 bp):
AACTGGCGAACCCCCAACTCACCAAACA
Found at i:32625914 original size:21 final size:21
Alignment explanation
Indices: 32625874--32625914 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
32625864 TCACACTTCA
*
32625874 ATCACATACTCATATTTGTTT
1 ATCACATACTCATATCTGTTT
32625895 ATCA-ATACTCATATCCTGTT
1 ATCACATACTCATAT-CTGTT
32625915 GAACACGTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.29, C:0.22, G:0.05, T:0.44
Consensus pattern (21 bp):
ATCACATACTCATATCTGTTT
Found at i:32626043 original size:50 final size:51
Alignment explanation
Indices: 32625982--32626171 Score: 170
Period size: 51 Copynumber: 3.7 Consensus size: 51
32625972 ATTATTATCA
* *
32625982 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACCTGATCAAA-CTT
1 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACCTGACCAAAGCCT
* * *
32626032 TTCGATTCACGTAGTAGCCTGT-ACATAGTACAACACACGTGACCAAAGCCT
1 TTCGATACACGTAGTAGCCT-TCACATAGTACTACACACCTGACCAAAGCCT
* * * * * * ** * *
32626083 TCCGGTACACATAATAGTCTGCACATAGTACTACACATGTGACCATTA-TCT
1 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACCTGACCA-AAGCCT
* * * *
32626134 ATCGATACACGTAGTAGCCTGCACTTGGTACTACACAC
1 TTCGATACACGTAGTAGCCTTCACATAGTACTACACAC
32626172 GTGTTCATAG
Statistics
Matches: 111, Mismatches: 25, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
50 41 0.37
51 69 0.62
52 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.26
Consensus pattern (51 bp):
TTCGATACACGTAGTAGCCTTCACATAGTACTACACACCTGACCAAAGCCT
Found at i:32631729 original size:47 final size:47
Alignment explanation
Indices: 32631651--32632580 Score: 1518
Period size: 47 Copynumber: 19.6 Consensus size: 47
32631641 TATTTGAATA
*
32631651 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGTCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
32631700 AATGTGAAATTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
32631747 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
32631794 AACGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
32631841 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
32631888 AATGTGAAAGTTTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAG--TGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
32631937 AATGTGAAATTGTATATATGTGATAAGGCCGAATGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
32631984 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
32632031 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
32632078 AATGTGAAAGTGTATATATGTGATAAGGCCAAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
32632125 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
32632174 AATGTGAAATTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
32632221 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
32632270 AATGTGAAATTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
32632317 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
32632364 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
32632413 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
32632460 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
32632507 AATGTGAAAGTGTATATATGCGACAAGGCCGAATGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
32632554 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
32632581 TCCCGAAGGG
Statistics
Matches: 825, Mismatches: 48, Indels: 18
0.93 0.05 0.02
Matches are distributed among these distances:
47 637 0.77
49 188 0.23
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:32631944 original size:143 final size:141
Alignment explanation
Indices: 32631651--32632580 Score: 1518
Period size: 143 Copynumber: 6.5 Consensus size: 141
32631641 TATTTGAATA
* *
32631651 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGTCCGATGTGATGAATGTGAAATTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
32631716 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
32631781 GGCCGATGTGATG
129 GGCCGATGTGATG
* *
32631794 AACGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
32631859 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTTTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG--TGTATATATGTGATAAGGCCTAAT
32631924 GGCCGATGTGATG
129 GGCCGATGTGATG
* * * *
32631937 AATGTGAAATTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
32632002 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAG
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
32632067 CCGATGTGATG
131 CCGATGTGATG
* *
32632078 AATGTGAAAGTGTATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
* *
32632143 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATTGTATATATGTGATAAGGCCGAAT
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
32632208 GGCCAATGTGATG
129 GGCCGATGTGATG
*
32632221 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
32632286 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
32632351 AGCCGATGTGATG
129 GGCCGATGTGATG
32632364 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
32632429 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
32632494 GGCCGATGTGATG
129 GGCCGATGTGATG
* * * * * * *
32632507 AATGTGAAAGTGTATATATGCGACAAGGCCGAATGGCCAACGTGATGGATGTGAAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
32632572 TGTGATAAG
66 TGTGATAAG
32632581 TCCCGAAGGG
Statistics
Matches: 738, Mismatches: 43, Indels: 14
0.93 0.05 0.02
Matches are distributed among these distances:
141 232 0.31
143 462 0.63
145 44 0.06
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.30
Consensus pattern (141 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATGTGATG
Found at i:32631974 original size:190 final size:189
Alignment explanation
Indices: 32631651--32632580 Score: 1517
Period size: 190 Copynumber: 4.9 Consensus size: 189
32631641 TATTTGAATA
*
32631651 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGTCCGATGTGATGAATGTGAAA-TTGTAT
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTTGTAT
*
32631715 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
* *
32631780 TGGCCGATGTGATGAACGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
129 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
32631841 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTTTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-TTGTATA
* *
32631906 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATTGTATATATGTGATAAGGCCGAAT
65 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
* *
32631971 GGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
130 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
32632031 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG-TGTATAT
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTTGTATAT
* *
32632095 ATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAA
* * *
32632160 TGGCCGATGTGATGAATGTGAAATTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
129 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
32632221 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-TTGTAT
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTTGTAT
*
32632285 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
*
32632350 TAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
129 TGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
32632413 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-TGTATAT
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTTGTATAT
* * *
32632477 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGCGACAAGGCCGAATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
* * * *
32632542 GCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
131 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
32632581 TCCCGAAGGG
Statistics
Matches: 689, Mismatches: 41, Indels: 22
0.92 0.05 0.03
Matches are distributed among these distances:
188 100 0.15
190 455 0.66
192 134 0.19
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.30
Consensus pattern (189 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:32632800 original size:37 final size:37
Alignment explanation
Indices: 32632699--32632800 Score: 168
Period size: 37 Copynumber: 2.8 Consensus size: 37
32632689 CCGAGCTCTA
*
32632699 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
32632736 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* * *
32632773 AAGACCCGATAACTTCATGTGGAGATTT
1 AAGACCCGATGACTACGTGTGGAGATTT
32632801 CATTTGAGCT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Found at i:32638459 original size:51 final size:51
Alignment explanation
Indices: 32638335--32638521 Score: 193
Period size: 50 Copynumber: 3.7 Consensus size: 51
32638325 TATCATTCGA
* * * *
32638335 TACACGTAGTAGCCTTCACATAGTACTACACACCTGATC-AAACTTTTCGG
1 TACACGTAGTAGCCTCCACATAGTACTACACACGTGACCAAAACTTTCCGG
* * *
32638385 TTCATGTAGTAGCCTGCACATAGTACTACACACGTGACCAAAGAC-TTCCGG
1 TACACGTAGTAGCCTCCACATAGTACTACACACGTGACCAAA-ACTTTCCGG
* * * * * *
32638436 TACACATAGTAGCCTCCACATAGTACTACACATGTGACCATTATCTAT-C-A
1 TACACGTAGTAGCCTCCACATAGTACTACACACGTGACCA-AAACTTTCCGG
* *
32638486 TACACGTAGTAGCCTGCACTTAGTACTACACACGTG
1 TACACGTAGTAGCCTCCACATAGTACTACACACGTG
32638522 TTTATAGGCA
Statistics
Matches: 114, Mismatches: 19, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
50 66 0.58
51 44 0.39
52 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (51 bp):
TACACGTAGTAGCCTCCACATAGTACTACACACGTGACCAAAACTTTCCGG
Found at i:32643427 original size:18 final size:19
Alignment explanation
Indices: 32643399--32643434 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
32643389 CTCTTCTTCT
32643399 TCTCTCGTTTCTTTTTCAA
1 TCTCTCGTTTCTTTTTCAA
32643418 TCTCTC-TTTCTTTTTCA
1 TCTCTCGTTTCTTTTTCA
32643435 TCCGCATAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.08, C:0.28, G:0.03, T:0.61
Consensus pattern (19 bp):
TCTCTCGTTTCTTTTTCAA
Found at i:32648132 original size:51 final size:50
Alignment explanation
Indices: 32648014--32648256 Score: 281
Period size: 51 Copynumber: 4.8 Consensus size: 50
32648004 AGTGATGGTT
* * * *
32648014 ACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAAT-GAAAGGTC
1 ACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACC-GAATAGTATGATC
* * * * * **
32648064 GCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTCCGATC
1 ACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATAG-TATGATC
* * *
32648115 ACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAATATTAATGGTC
1 ACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATAGT-ATGATC
* * *
32648166 ACGTGTGTAGTACTATGTGCAGGCTACTACGTGAACCGAAAAGTTTGATC
1 ACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATAGTATGATC
* *
32648216 ACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAAT
1 ACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAAT
32648257 GATAATAGTT
Statistics
Matches: 160, Mismatches: 30, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
49 3 0.02
50 75 0.47
51 82 0.51
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (50 bp):
ACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATAGTATGATC
Found at i:32648139 original size:101 final size:101
Alignment explanation
Indices: 32648014--32648287 Score: 347
Period size: 101 Copynumber: 2.7 Consensus size: 101
32648004 AGTGATGGTT
* * *
32648014 ACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGA-AA-GGTCGCATGTGTAGTAC
1 ACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATC-GAATGATAATGGTCACATGTGTAGTAC
* * * *
32648077 TATGTGCAGGCTACTATGCGTACCGGATAGCTCCGATC
65 TATGTGCAGGCTACTACGCGAACCGAAAAG-TCCGATC
* *
32648115 ACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAAT-ATTAATGGTCACGTGTGTAGTAC
1 ACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGA-TAATGGTCACATGTGTAGTAC
* **
32648179 TATGTGCAGGCTACTACGTGAACCGAAAAGTTTGATC
65 TATGTGCAGGCTACTACGCGAACCGAAAAGTCCGATC
* * * * *
32648216 ACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAATAGTTAAATGAGTGGTACT
1 ACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAATGGTCACATGTGTAGTACT
32648281 ATGTGCA
66 ATGTGCA
32648288 AACCACCGAA
Statistics
Matches: 151, Mismatches: 18, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
99 1 0.01
100 4 0.03
101 105 0.70
102 41 0.27
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (101 bp):
ACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAATGGTCACATGTGTAGTACT
ATGTGCAGGCTACTACGCGAACCGAAAAGTCCGATC
Found at i:32652383 original size:45 final size:45
Alignment explanation
Indices: 32652289--32652504 Score: 290
Period size: 45 Copynumber: 4.8 Consensus size: 45
32652279 TACACGGTGG
* * ** *
32652289 ATCAGCACATAGC-ACCACCCTTATAATCAATTATATTCGGTGGA
1 ATCAGCACATAGCAACCACCTTTATAATCAATGATACCCGATGGA
** * **
32652333 ATCAGCACATAGCAACCACCTTTATTTTCAATAATTTCCGATGGA
1 ATCAGCACATAGCAACCACCTTTATAATCAATGATACCCGATGGA
* *
32652378 GTCAGCACATAGCAACCACCTTTATAATCAATGGTACCCGATGGA
1 ATCAGCACATAGCAACCACCTTTATAATCAATGATACCCGATGGA
* *
32652423 ATCAGCACATAGCAACCACCTTTCTAATCAATGGTACCCGATGGA
1 ATCAGCACATAGCAACCACCTTTATAATCAATGATACCCGATGGA
*
32652468 ATCAGCACATATCAACCACCTTTATAATCAATGATAC
1 ATCAGCACATAGCAACCACCTTTATAATCAATGATAC
32652505 TTAGTACACA
Statistics
Matches: 152, Mismatches: 19, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
44 13 0.09
45 139 0.91
ACGTcount: A:0.35, C:0.26, G:0.13, T:0.26
Consensus pattern (45 bp):
ATCAGCACATAGCAACCACCTTTATAATCAATGATACCCGATGGA
Found at i:32653815 original size:57 final size:58
Alignment explanation
Indices: 32653753--32653881 Score: 131
Period size: 57 Copynumber: 2.2 Consensus size: 58
32653743 TTCAAAAATA
* * *
32653753 ATATTATCTTAATAAAT-TTAACATTTAATTTAATTTATTACTT-ATCTTGAT-AGTATT
1 ATATTAT-TTAATAAATCTTAACATTAAATTTAATCTAATA-TTCATCTTGATAAGTATT
* * * *
32653810 TTATTAAATTAAT-TATCTTAATATTAAATTTAATCTAATATTCATCTTGATAAGTATT
1 ATATT-ATTTAATAAATCTTAACATTAAATTTAATCTAATATTCATCTTGATAAGTATT
32653868 ATATTAATTTAATA
1 ATATT-ATTTAATA
32653882 TTAAATTAAT
Statistics
Matches: 58, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
56 4 0.07
57 36 0.62
58 18 0.31
ACGTcount: A:0.40, C:0.06, G:0.03, T:0.51
Consensus pattern (58 bp):
ATATTATTTAATAAATCTTAACATTAAATTTAATCTAATATTCATCTTGATAAGTATT
Found at i:32653894 original size:58 final size:57
Alignment explanation
Indices: 32653779--32653902 Score: 137
Period size: 58 Copynumber: 2.2 Consensus size: 57
32653769 TTTAACATTT
* * * *
32653779 AATTTAATTTATTACTTATCTTGATAGTATTTTATTAAATTAATTATCTTAATATTA
1 AATTTAATCTAATACTTATCTTGATAGTATTATATTAAATTAATTATCTAAATATTA
*
32653836 AATTTAATCTAATA-TTCATCTTGATAAGTATTATATTAATTTAA-TAT-TAAATTAATTA
1 AATTTAATCTAATACTT-ATCTTGAT-AGTATTATATTAAATTAATTATCTAAA-T-ATTA
*
32653894 AGTTTAATC
1 AATTTAATC
32653903 ATAGTTGAAC
Statistics
Matches: 57, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
56 5 0.09
57 24 0.42
58 28 0.49
ACGTcount: A:0.40, C:0.06, G:0.04, T:0.51
Consensus pattern (57 bp):
AATTTAATCTAATACTTATCTTGATAGTATTATATTAAATTAATTATCTAAATATTA
Found at i:32656086 original size:38 final size:39
Alignment explanation
Indices: 32656016--32656091 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 39
32656006 GATACAACTG
*
32656016 ATCATGTCAACTAATTGCAAAAGACCAAACATGTTGGTC
1 ATCATGTCAACTAACTGCAAAAGACCAAACATGTTGGTC
*
32656055 ATCATGTCACCTAACTGC-AAAGACCAAACATGTTGGT
1 ATCATGTCAACTAACTGCAAAAGACCAAACATGTTGGT
32656092 GAACTATGAG
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
38 19 0.54
39 16 0.46
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.25
Consensus pattern (39 bp):
ATCATGTCAACTAACTGCAAAAGACCAAACATGTTGGTC
Found at i:32668952 original size:50 final size:49
Alignment explanation
Indices: 32668898--32669025 Score: 130
Period size: 50 Copynumber: 2.6 Consensus size: 49
32668888 TATTGAGATT
* * * *
32668898 ATGAGAGGTCTCATGTAAGACCATGTTTGAGACATGACGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGAGACATGACATGGGCACCG-G
*** * * *
32668948 ATGAGAGGTCCCCCATAAGACCATGTCTGGGACATGGCATGGGCACCGT
1 ATGAGAGGTCCCATGTAAGACCATGTCTGAGACATGACATGGGCACCGG
** *
32668997 ATGAGAACTCCCATGTAAGACCATATCTG
1 ATGAGAGGTCCCATGTAAGACCATGTCTG
32669026 GGATATGGCA
Statistics
Matches: 62, Mismatches: 16, Indels: 1
0.78 0.20 0.01
Matches are distributed among these distances:
49 23 0.37
50 39 0.63
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (49 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGAGACATGACATGGGCACCGG
Found at i:32669020 original size:49 final size:49
Alignment explanation
Indices: 32668909--32669090 Score: 143
Period size: 49 Copynumber: 3.7 Consensus size: 49
32668899 TGAGAGGTCT
* * * * * **
32668909 CATGTAAGACCATGTTTGAGACATGACGTTGGCACCGAGATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-TATGAGAACTCC
*** *
32668959 CCCATAAGACCATGTCTGGGACATGGCATGGGCACCGTATGAGAACTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGTATGAGAACTCC
* * * * *
32669008 CATGTAAGACCATATCTGGGATATGGCATTGGTA--GTACAGAAAACATCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGTA-TGAGAAC-TCC
* * * *
32669057 CATGTAAGACTATTTCTGGGACATAGCTTTGGCA
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCA
32669091 TGTATTATCA
Statistics
Matches: 104, Mismatches: 26, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
47 3 0.03
48 5 0.05
49 67 0.64
50 29 0.28
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (49 bp):
CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGTATGAGAACTCC
Found at i:32677062 original size:17 final size:16
Alignment explanation
Indices: 32677040--32677073 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
32677030 GGGGATGAAA
32677040 TTTGTTTGATGTTTATT
1 TTTGTTTG-TGTTTATT
*
32677057 TTTGTTTGTTTTTATT
1 TTTGTTTGTGTTTATT
32677073 T
1 T
32677074 CATAATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.09, C:0.00, G:0.15, T:0.76
Consensus pattern (16 bp):
TTTGTTTGTGTTTATT
Found at i:32686040 original size:28 final size:28
Alignment explanation
Indices: 32686008--32686064 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
32685998 GTTACTGAGA
32686008 AAGAATCTATTGAGGACATTGTCAATGC
1 AAGAATCTATTGAGGACATTGTCAATGC
*
32686036 AAGAATCTGTTGAGGACATTGTCAATGC
1 AAGAATCTATTGAGGACATTGTCAATGC
32686064 A
1 A
32686065 TCCGAGTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (28 bp):
AAGAATCTATTGAGGACATTGTCAATGC
Found at i:32689913 original size:22 final size:22
Alignment explanation
Indices: 32689853--32689910 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 22
32689843 AATCTTCAAG
32689853 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
32689872 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
32689894 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
32689911 GATTTAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.39
22 8 0.24
23 12 0.36
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:32690157 original size:23 final size:23
Alignment explanation
Indices: 32690116--32690160 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
32690106 TCTTATTTTG
*
32690116 TTGATTTGTTTATAATTTATTTA
1 TTGATTTGTATATAATTTATTTA
**
32690139 TTGATTTGTATATTGTTTATTT
1 TTGATTTGTATATAATTTATTT
32690161 CAAATCTCTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.22, C:0.00, G:0.11, T:0.67
Consensus pattern (23 bp):
TTGATTTGTATATAATTTATTTA
Found at i:32690518 original size:36 final size:37
Alignment explanation
Indices: 32690438--32690518 Score: 87
Period size: 36 Copynumber: 2.2 Consensus size: 37
32690428 GTATACATAC
*
32690438 ATATGTTTTATAATATATACATATACGTACACATTTTTT
1 ATAT-TTTTATAATATATACATATACG-ACACATTTTAT
* *
32690477 A-ATTTTTATAA-ATATATATATAC-ACATACTTTTAT
1 ATATTTTTATAATATATACATATACGACACA-TTTTAT
32690512 ATATTTT
1 ATATTTT
32690519 CTATGTTTCA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
34 4 0.11
35 6 0.16
36 16 0.43
37 8 0.22
38 2 0.05
39 1 0.03
ACGTcount: A:0.38, C:0.09, G:0.02, T:0.51
Consensus pattern (37 bp):
ATATTTTTATAATATATACATATACGACACATTTTAT
Found at i:32697964 original size:40 final size:40
Alignment explanation
Indices: 32697912--32698265 Score: 627
Period size: 40 Copynumber: 8.8 Consensus size: 40
32697902 ATTACCACAA
* * ** *
32697912 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
32697952 GCACGAATGCCTTCGGGCCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
32697992 GCACAAATGCCTTCGGGCCTTAGCCCGGATATATCAATTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
32698032 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
32698072 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
32698112 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
32698152 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
32698192 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
32698232 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAT
32698266 TCAAATGCTC
Statistics
Matches: 303, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 303 1.00
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:32706683 original size:40 final size:39
Alignment explanation
Indices: 32706631--32706929 Score: 383
Period size: 40 Copynumber: 7.8 Consensus size: 39
32706621 ATTACCACAA
* ** *
32706631 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTC
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
32706671 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
32706711 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATATCAACTC
32706751 GCACAAATGCC-TCGGGTCTTAGCCCGGATATATCAA-TC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
32706789 -CA-AAT--C-TC-GGTC-TA--CC-GATAT-C-AACTC
1 GCACAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
32706816 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
32706856 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
32706896 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAT
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAT
32706930 TCAAATGCTC
Statistics
Matches: 234, Mismatches: 8, Indels: 34
0.85 0.03 0.12
Matches are distributed among these distances:
26 2 0.01
27 2 0.01
28 7 0.03
29 2 0.01
30 3 0.01
31 2 0.01
32 5 0.02
33 5 0.02
34 4 0.02
35 5 0.02
37 4 0.02
38 7 0.03
39 27 0.12
40 155 0.66
41 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.25
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:32709873 original size:44 final size:44
Alignment explanation
Indices: 32709823--32710062 Score: 288
Period size: 44 Copynumber: 5.7 Consensus size: 44
32709813 AGTAGTCTTG
**
32709823 TCTCCCTGGAAAGCAGTGGAATAGGTTGAAGATTGTGAATCCTA
1 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTA
* * * *
32709867 CCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTGTGAGTCCTA
1 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTA
*
32709911 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTTCTA
1 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCCTA
*
32709955 TCTCACTGGTCAGCAGTGG-A-A---T--AG---GTGAATCCTA
1 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTA
32709989 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTA
1 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTA
* *
32710033 TCTTCCTGAG-CAGCAGTGGAGTAGGTTGAA
1 TCTCCCTG-GTCAGCAGTGGAATAGGTTGAA
32710063 AATTACAGAT
Statistics
Matches: 167, Mismatches: 16, Indels: 26
0.80 0.08 0.12
Matches are distributed among these distances:
34 24 0.14
35 3 0.02
36 1 0.01
37 2 0.01
39 2 0.01
41 2 0.01
42 1 0.01
43 2 0.01
44 129 0.77
45 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (44 bp):
TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTA
Found at i:32710035 original size:78 final size:78
Alignment explanation
Indices: 32709901--32710058 Score: 241
Period size: 78 Copynumber: 2.0 Consensus size: 78
32709891 GTTGAAGATT
* *
32709901 GTGAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTTCTATC-TCACTG-G
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTTC-CTGAG
32709964 TCAGCAGTGGAATAG
65 -CAGCAGTGGAATAG
32709979 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTTCCTGAG
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTTCCTGAG
*
32710043 CAGCAGTGGAGTAG
65 CAGCAGTGGAATAG
32710057 GT
1 GT
32710059 TGAAAATTAC
Statistics
Matches: 74, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
78 69 0.93
79 5 0.07
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.29
Consensus pattern (78 bp):
GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTTCCTGAGC
AGCAGTGGAATAG
Found at i:32710079 original size:44 final size:44
Alignment explanation
Indices: 32709981--32710097 Score: 121
Period size: 44 Copynumber: 2.7 Consensus size: 44
32709971 TGGAATAGGT
* * * **
32709981 GAATCCTATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGT
1 GAATCCTATCTCCCTAAG-CAGCAGTGGAGTAGGTTGAAAATTCA
* *
32710025 GAATCCTATCTTCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACA
1 GAATCCTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAAATT-CA
* *
32710070 G-ATCTTATCTCCCTAAGCAGTAGTGGAG
1 GAATCCTATCTCCCTAAGCAGCAGTGGAG
32710098 CAGATCGAAG
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
44 59 0.97
45 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (44 bp):
GAATCCTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAAATTCA
Found at i:32710079 original size:122 final size:122
Alignment explanation
Indices: 32709857--32710080 Score: 328
Period size: 122 Copynumber: 1.8 Consensus size: 122
32709847 GTTGAAGATT
* *
32709857 GTGAATCCTACCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTC
1 GTGAATCCTACCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTC
* *
32709922 AGCAGTGGAATAGGTTGAAGATTGTAAGTTCTATCTCACTGGTCAGCAGTGGAATAG
66 AGCAGTGGAATAGGTTGAAGAATGTAAGATCTATCTCACTGGTCAGCAGTGGAATAG
* * *
32709979 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTTCCTGAG-
1 GTGAATCCTACCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTG-GT
*
32710043 CAGCAGTGGAGTAGGTTGAA-AAT-TACAGATCTTATCTC
65 CAGCAGTGGAATAGGTTGAAGAATGTA-AGATC-TATCTC
32710081 CCTAAGCAGT
Statistics
Matches: 91, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
120 2 0.02
121 6 0.07
122 82 0.90
123 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (122 bp):
GTGAATCCTACCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTC
AGCAGTGGAATAGGTTGAAGAATGTAAGATCTATCTCACTGGTCAGCAGTGGAATAG
Found at i:32710285 original size:50 final size:50
Alignment explanation
Indices: 32710231--32710498 Score: 173
Period size: 50 Copynumber: 5.4 Consensus size: 50
32710221 TTGGCATTAC
* * *
32710231 AGTGGAATAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCTGTGT
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAGCTGTGT
* * ** * *
32710281 AGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCTCC-AACAT-TGC
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTC-CCTAGC-TGTGT
** * * * * *
32710331 AGTTAAATAGATTAAAGCCACAACGGTGAATCTTACTTCCTTAGCGGTGT
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAGCTGTGT
* * * ** * ** * *
32710381 AGTGTAACAGATTTAAGCTATGACGGTGAATCTTGTTTCCCTACCAT-TGC
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAGC-TGTGT
** * * * * * *
32710431 AGTTAAATAGATTGAAGCCACAACGACAAATCTTACTTCCCTGGCAGTCT
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAGCTGTGT
*
32710481 AGTGGAACAGATTAAAGC
1 AGTGGAACAGATTGAAGC
32710499 TAAAGGTAGC
Statistics
Matches: 156, Mismatches: 56, Indels: 12
0.70 0.25 0.05
Matches are distributed among these distances:
49 1 0.01
50 152 0.97
51 3 0.02
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (50 bp):
AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAGCTGTGT
Found at i:32710354 original size:100 final size:99
Alignment explanation
Indices: 32710236--32710533 Score: 366
Period size: 100 Copynumber: 3.0 Consensus size: 99
32710226 ATTACAGTGG
* *
32710236 AATAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCTGTGTAGTGGAACAGATTGAAGCTA
1 AATAGATTGAAGCCACAAC-GCGAATCTTACTTCCCTGGCAGTGTAGTGGAACAGATTAAAGCTA
32710301 CGACGGCGAATCTTGTTTCTCC-AACATTGCAGTTA
65 CGACGGCGAATCTTGTTTC-CCTAACATTGCAGTTA
* * * * * * *
32710336 AATAGATTAAAGCCACAACGGTGAATCTTACTTCCTTAGCGGTGTAGTGTAACAGATTTAAGCTA
1 AATAGATTGAAGCCACAAC-GCGAATCTTACTTCCCTGGCAGTGTAGTGGAACAGATTAAAGCTA
* * *
32710401 TGACGGTGAATCTTGTTTCCCTACCATTGCAGTTA
65 CGACGGCGAATCTTGTTTCCCTAACATTGCAGTTA
* *
32710436 AATAGATTGAAGCCACAACGACAAATCTTACTTCCCTGGCAGTCTAGTGGAACAGATTAAAGCTA
1 AATAGATTGAAGCCACAACG-CGAATCTTACTTCCCTGGCAGTGTAGTGGAACAGATTAAAGCTA
* * * *
32710501 -AAGGTAGCGAATCTTGTTTCCCTAGCGTTGCAG
65 CGACG--GCGAATCTTGTTTCCCTAACATTGCAG
32710534 CGGAGCAAAA
Statistics
Matches: 169, Mismatches: 25, Indels: 7
0.84 0.12 0.03
Matches are distributed among these distances:
99 5 0.03
100 140 0.83
101 24 0.14
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (99 bp):
AATAGATTGAAGCCACAACGCGAATCTTACTTCCCTGGCAGTGTAGTGGAACAGATTAAAGCTAC
GACGGCGAATCTTGTTTCCCTAACATTGCAGTTA
Found at i:32714960 original size:14 final size:14
Alignment explanation
Indices: 32714941--32714974 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
32714931 AGTGGTAAGA
32714941 GATTAAAAATCCTT
1 GATTAAAAATCCTT
32714955 GATTAAAAATCCTT
1 GATTAAAAATCCTT
*
32714969 GGTTAA
1 GATTAA
32714975 TCTCTCTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (14 bp):
GATTAAAAATCCTT
Found at i:32715777 original size:4 final size:4
Alignment explanation
Indices: 32715768--32715794 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
32715758 TTCACTGCGT
32715768 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
32715795 TTTCAGTATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:32716418 original size:3 final size:3
Alignment explanation
Indices: 32716410--32716448 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
32716400 GTTTAAAGGG
32716410 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
32716449 AGGGATTGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:32719141 original size:37 final size:36
Alignment explanation
Indices: 32719078--32719151 Score: 105
Period size: 36 Copynumber: 2.0 Consensus size: 36
32719068 AACTTTGTTT
*
32719078 ATTTTGTGCTTTTACATGTAAAATACAAGCGG-AGGA
1 ATTTTGTGCTATTACATGTAAAATACAAG-GGAAGGA
*
32719114 ATTTTGTGCTATTATATGGTAAAATACAAGGGAAGGA
1 ATTTTGTGCTATTACAT-GTAAAATACAAGGGAAGGA
32719151 A
1 A
32719152 AAGGGATTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
36 17 0.50
37 17 0.50
ACGTcount: A:0.36, C:0.08, G:0.23, T:0.32
Consensus pattern (36 bp):
ATTTTGTGCTATTACATGTAAAATACAAGGGAAGGA
Found at i:32722222 original size:20 final size:19
Alignment explanation
Indices: 32722193--32722239 Score: 76
Period size: 19 Copynumber: 2.4 Consensus size: 19
32722183 ATTAACATTA
*
32722193 TTAAACTAGATTAATTTAAG
1 TTAAATTAGATTAA-TTAAG
32722213 TTAAATTAGATTAATTAAG
1 TTAAATTAGATTAATTAAG
32722232 TTAAATTA
1 TTAAATTA
32722240 AACTATAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 13 0.50
20 13 0.50
ACGTcount: A:0.47, C:0.02, G:0.09, T:0.43
Consensus pattern (19 bp):
TTAAATTAGATTAATTAAG
Found at i:32725775 original size:16 final size:16
Alignment explanation
Indices: 32725754--32725784 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32725744 CCAAACATGT
32725754 CAATAGCTAGCCATTC
1 CAATAGCTAGCCATTC
*
32725770 CAATAGCTAGTCATT
1 CAATAGCTAGCCATT
32725785 ATGAAATACT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (16 bp):
CAATAGCTAGCCATTC
Found at i:32735883 original size:19 final size:19
Alignment explanation
Indices: 32735837--32735884 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
32735827 TGTTGATGTG
* *
32735837 CCAGGATGCACTTCGTGTT
1 CCAGGATGCGCTTCGTGCT
* * *
32735856 CTAGTATGCGCTTTGTGCT
1 CCAGGATGCGCTTCGTGCT
32735875 CCAGGATGCG
1 CCAGGATGCG
32735885 TTTTTGTATG
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.15, C:0.25, G:0.29, T:0.31
Consensus pattern (19 bp):
CCAGGATGCGCTTCGTGCT
Found at i:32738320 original size:27 final size:27
Alignment explanation
Indices: 32738290--32738438 Score: 142
Period size: 27 Copynumber: 5.6 Consensus size: 27
32738280 GAATTTTCCG
*
32738290 CAAAGGC-ATCTCTTTTAAAGTTCACCA
1 CAAAGGCTAT-TCTTTTAAAGTTCGCCA
* * **
32738317 CAAAGACTATTCTTTCAGAA--TCATCA
1 CAAAGGCTATTCTTTTA-AAGTTCGCCA
* * * *
32738343 CAATGGTTATTCTTTTAGAGTTTGCCA
1 CAAAGGCTATTCTTTTAAAGTTCGCCA
* * *
32738370 CAAAGACTATTCTTTTAGAGTTTGCCA
1 CAAAGGCTATTCTTTTAAAGTTCGCCA
*
32738397 CAAAGGCTATTCTTTCAAAGTTCGCCA
1 CAAAGGCTATTCTTTTAAAGTTCGCCA
32738424 CAAAGGCTATTCTTT
1 CAAAGGCTATTCTTT
32738439 AGCTATCATG
Statistics
Matches: 100, Mismatches: 18, Indels: 8
0.79 0.14 0.06
Matches are distributed among these distances:
25 1 0.01
26 18 0.18
27 77 0.77
28 4 0.04
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.35
Consensus pattern (27 bp):
CAAAGGCTATTCTTTTAAAGTTCGCCA
Found at i:32738335 original size:54 final size:53
Alignment explanation
Indices: 32738276--32738438 Score: 175
Period size: 54 Copynumber: 3.0 Consensus size: 53
32738266 AGGTGATCTA
* *
32738276 TTCAGAATTTTCCGCAAAGGCATCTCTTTTAAAGTTCACCACAAAGACTATTCT
1 TTCAGAATTTTCCACAAAGGCAT-TCTTTTAAAGTTCGCCACAAAGACTATTCT
** * * * *
32738330 TTCAGAATCAT-CACAATGGTTATTCTTTTAGAGTTTGCCACAAAGACTATTCT
1 TTCAGAATTTTCCACAAAGG-CATTCTTTTAAAGTTCGCCACAAAGACTATTCT
* * * * *
32738383 TTTAGAGTTTGCCACAAAGGCTATTCTTTCAAAGTTCGCCACAAAGGCTATTCT
1 TTCAGAATTTTCCACAAAGGC-ATTCTTTTAAAGTTCGCCACAAAGACTATTCT
32738437 TT
1 TT
32738439 AGCTATCATG
Statistics
Matches: 87, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
53 39 0.45
54 48 0.55
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.36
Consensus pattern (53 bp):
TTCAGAATTTTCCACAAAGGCATTCTTTTAAAGTTCGCCACAAAGACTATTCT
Found at i:32742684 original size:50 final size:50
Alignment explanation
Indices: 32742630--32742809 Score: 189
Period size: 50 Copynumber: 3.5 Consensus size: 50
32742620 CAATGTCATA
* **
32742630 TCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATG
* ** *
32742680 TCCCAAACATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATG
* * ** *
32742730 TCCTAGACATGGTCTTACGTGGGACCTCTCATAACCTCAATAATGCCAATGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GGTGCCAACGCCATG
*
32742786 TCCCAGACATGGTCTTTCATGGGA
1 TCCCAGACATGGTCTTACATGGGA
32742810 TCTCATTCCC
Statistics
Matches: 107, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
50 72 0.67
53 2 0.02
56 33 0.31
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATG
Found at i:32750306 original size:50 final size:50
Alignment explanation
Indices: 32750244--32750482 Score: 192
Period size: 50 Copynumber: 4.7 Consensus size: 50
32750234 TGATAATAAC
* * * **
32750244 ATGCCAAAGCCATGTCCCAAACATGGTCTTACATGAGAGTTCTCATATCA
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACAGGAGACCTCTCATATCA
* * * * * *
32750294 ATGCCCATGCCATGTCCTAGACATGGTCTTACGGGGGACCTCTCATCTCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACAGGAGACCTCTCATATCA
* * * * * *
32750344 GTGCCAATGCCACGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACAGGAGACCTCTCATATCA
* ** * *
32750394 GTGCCAACACCATGTCCTAGACATGGTCTTACGTGGA-ACCTCTCATAACCTCAATA
1 ATGCCAATGCCATGTCCCAGACATGGTCTTAC-AGGAGACCTCTCAT-A--TC---A
* *
32750450 ATGTCAATGCCATGTCCCAAACATGGTCTTACA
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACA
32750483 TGGGATCTCA
Statistics
Matches: 152, Mismatches: 30, Indels: 9
0.80 0.16 0.05
Matches are distributed among these distances:
50 122 0.80
51 2 0.01
53 2 0.01
56 26 0.17
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (50 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACAGGAGACCTCTCATATCA
Found at i:32756999 original size:27 final size:27
Alignment explanation
Indices: 32756955--32757166 Score: 192
Period size: 27 Copynumber: 7.8 Consensus size: 27
32756945 TTTCGATCAT
* *
32756955 TTTTACAAATCGGGGGTATTTTGGTAA
1 TTTTACAAATTGAGGGTATTTTGGTAA
* * *
32756982 TTCTACAAATTGAAGGTATTTCGGTAA
1 TTTTACAAATTGAGGGTATTTTGGTAA
* * ***
32757009 TTTCACAAATCGAGGGTATTTCAATAA
1 TTTTACAAATTGAGGGTATTTTGGTAA
*
32757036 TTTTTACATATTGAGGGTATTTTGGTAA
1 -TTTTACAAATTGAGGGTATTTTGGTAA
* * *
32757064 TTTTGCAAA-TCAGGGGTATTTTAGTAA
1 TTTTACAAATTGA-GGGTATTTTGGTAA
* * *
32757091 TTTTTGCAAATCGAGGGTATTTTAGTAA
1 -TTTTACAAATTGAGGGTATTTTGGTAA
* *
32757119 TTTTTCAAATTGAGGGTATTTTGATAA
1 TTTTACAAATTGAGGGTATTTTGGTAA
* * *
32757146 TTTTGCAAACTAAGGGTATTT
1 TTTTACAAATTGAGGGTATTT
32757167 CAATAATTTT
Statistics
Matches: 151, Mismatches: 30, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
26 2 0.01
27 104 0.69
28 44 0.29
29 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (27 bp):
TTTTACAAATTGAGGGTATTTTGGTAA
Found at i:32757055 original size:55 final size:55
Alignment explanation
Indices: 32756939--32757211 Score: 239
Period size: 55 Copynumber: 5.0 Consensus size: 55
32756929 TTACCCTATA
* * * * *
32756939 AGGGTATTTCGATCATTTTTACAAATCGGGGGTATTTTGGTAA-TTCTACAAATTG
1 AGGGTATTTCGGT-AATTTTACAAATCGAGGGTATTTTAGTAATTTTTACAAATTG
* * * * *
32756994 AAGGTATTTCGGTAATTTCACAAATCGAGGGTATTTCAATAATTTTTACATATTG
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTTACAAATTG
* * * *
32757049 AGGGTATTTTGGTAATTTTGCAAATC-AGGGGTATTTTAGTAATTTTTGCAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCGA-GGGTATTTTAGTAATTTTTACAAATTG
** * * * * *
32757104 AGGGTATTTTAGTAATTTTTCAAATTGAGGGTATTTT-GATAA-TTTTGCAAACTA
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAG-TAATTTTTACAAATTG
** * * * *
32757158 AGGGTATTTCAATAATTTTTGCAAATCGGGGGTATTTCAGTAATTTTTGCAAAT
1 AGGGTATTTCGGTAA-TTTTACAAATCGAGGGTATTTTAGTAATTTTTACAAAT
32757212 CAAGGGTCTC
Statistics
Matches: 179, Mismatches: 32, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
54 47 0.26
55 121 0.68
56 11 0.06
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (55 bp):
AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTTACAAATTG
Found at i:32757082 original size:82 final size:83
Alignment explanation
Indices: 32756939--32757211 Score: 311
Period size: 82 Copynumber: 3.3 Consensus size: 83
32756929 TTACCCTATA
* * * * * * * *
32756939 AGGGTATTTCGATCATTTTTACAAATCGGGGGTATTTTGGTAATTCTACAAAT-TGAAGGTATTT
1 AGGGTATTTCAATAATTTTTACAAATTGAGGGTATTTTGGTAATTTTGCAAATCAG-GGGTATTT
* **
32757003 CGGTAA-TTTCACAAATCG
65 CAGTAATTTTTGCAAATCG
* *
32757021 AGGGTATTTCAATAATTTTTACATATTGAGGGTATTTTGGTAATTTTGCAAATCAGGGGTATTTT
1 AGGGTATTTCAATAATTTTTACAAATTGAGGGTATTTTGGTAATTTTGCAAATCAGGGGTATTTC
32757086 AGTAATTTTTGCAAATCG
66 AGTAATTTTTGCAAATCG
* * * *
32757104 AGGGTATTTTAGTAATTTTT-CAAATTGAGGGTATTTTGATAATTTTGCAAA-CTAAGGGTATTT
1 AGGGTATTTCAATAATTTTTACAAATTGAGGGTATTTTGGTAATTTTGCAAATC-AGGGGTATTT
*
32757167 CAATAATTTTTGCAAATCG
65 CAGTAATTTTTGCAAATCG
* * *
32757186 GGGGTATTTCAGTAATTTTTGCAAAT
1 AGGGTATTTCAATAATTTTTACAAAT
32757212 CAAGGGTCTC
Statistics
Matches: 165, Mismatches: 22, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
81 1 0.01
82 130 0.79
83 34 0.21
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (83 bp):
AGGGTATTTCAATAATTTTTACAAATTGAGGGTATTTTGGTAATTTTGCAAATCAGGGGTATTTC
AGTAATTTTTGCAAATCG
Found at i:32757218 original size:28 final size:28
Alignment explanation
Indices: 32756939--32757218 Score: 227
Period size: 28 Copynumber: 10.2 Consensus size: 28
32756929 TTACCCTATA
* *
32756939 AGGGTATTTC-GATCATTTTTACAAATCG
1 AGGGTATTTCAG-TAATTTTTGCAAATCG
* ** * * *
32756967 GGGGTATTTTGGTAA-TTCTACAAATTG
1 AGGGTATTTCAGTAATTTTTGCAAATCG
* * **
32756994 AAGGTATTTCGGTAA-TTTCACAAATCG
1 AGGGTATTTCAGTAATTTTTGCAAATCG
* * * *
32757021 AGGGTATTTCAATAATTTTTACATATTG
1 AGGGTATTTCAGTAATTTTTGCAAATCG
**
32757049 AGGGTATTTTGGTAA-TTTTGCAAATC-
1 AGGGTATTTCAGTAATTTTTGCAAATCG
*
32757075 AGGGGTATTTTAGTAATTTTTGCAAATCG
1 A-GGGTATTTCAGTAATTTTTGCAAATCG
* *
32757104 AGGGTATTTTAGTAATTTTT-CAAATTG
1 AGGGTATTTCAGTAATTTTTGCAAATCG
* *
32757131 AGGGTATTT-TGATAA-TTTTGCAAA-CTA
1 AGGGTATTTCAG-TAATTTTTGCAAATC-G
*
32757158 AGGGTATTTCAATAATTTTTGCAAATCG
1 AGGGTATTTCAGTAATTTTTGCAAATCG
* *
32757186 GGGGTATTTCAGTAATTTTTGCAAATCA
1 AGGGTATTTCAGTAATTTTTGCAAATCG
32757214 AGGGT
1 AGGGT
32757219 CTCGGCGACC
Statistics
Matches: 206, Mismatches: 35, Indels: 22
0.78 0.13 0.08
Matches are distributed among these distances:
26 6 0.03
27 98 0.48
28 99 0.48
29 3 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.41
Consensus pattern (28 bp):
AGGGTATTTCAGTAATTTTTGCAAATCG
Found at i:32759208 original size:20 final size:21
Alignment explanation
Indices: 32759182--32759241 Score: 86
Period size: 20 Copynumber: 2.9 Consensus size: 21
32759172 CTCATACAAG
32759182 ATTGCACTTCGGTGCCTCTAT
1 ATTGCACTTCGGTGCCTCTAT
* * *
32759203 -TTGCACTTTGATGCCTCTGT
1 ATTGCACTTCGGTGCCTCTAT
32759223 ATTGCACTTCGGTGCCTCT
1 ATTGCACTTCGGTGCCTCT
32759242 GTTAGCATTT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
20 17 0.52
21 16 0.48
ACGTcount: A:0.12, C:0.28, G:0.20, T:0.40
Consensus pattern (21 bp):
ATTGCACTTCGGTGCCTCTAT
Found at i:32759229 original size:21 final size:21
Alignment explanation
Indices: 32759182--32759243 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
32759172 CTCATACAAG
*
32759182 ATTGCACTTCGGTGCCTCTAT
1 ATTGCACTTCGGTGCCTCTGT
* *
32759203 -TTGCACTTTGATGCCTCTGT
1 ATTGCACTTCGGTGCCTCTGT
32759223 ATTGCACTTCGGTGCCTCTGT
1 ATTGCACTTCGGTGCCTCTGT
32759244 TAGCATTTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
20 17 0.49
21 18 0.51
ACGTcount: A:0.11, C:0.27, G:0.21, T:0.40
Consensus pattern (21 bp):
ATTGCACTTCGGTGCCTCTGT
Found at i:32764754 original size:30 final size:29
Alignment explanation
Indices: 32764689--32764850 Score: 137
Period size: 30 Copynumber: 5.5 Consensus size: 29
32764679 ATTATCAATC
*
32764689 TATGAAAAGGGATAGCTTCGGATATAAAT
1 TATGAAAAGGGATAGCTTCGGCTATAAAT
* **
32764718 TATGAAAAGGGATGGCTTCGGCTATTGAT
1 TATGAAAAGGGATAGCTTCGGCTATAAAT
* * * *
32764747 CTATGAAAAAGGATAGCTTTGACTATCAAT
1 -TATGAAAAGGGATAGCTTCGGCTATAAAT
* * * *
32764777 TATGAAAAGGGAT-GGTGACGACCATCAAAT
1 TATGAAAAGGGATAGCT-TCGGCTAT-AAAT
* * *
32764807 TATGAAAAAGGATAGCTTCGGCTATTGAAC
1 TATGAAAAGGGATAGCTTCGGCTA-TAAAT
*
32764837 TATGAAAAGAGATA
1 TATGAAAAGGGATA
32764851 ATTTTGGTTA
Statistics
Matches: 103, Mismatches: 25, Indels: 9
0.75 0.18 0.07
Matches are distributed among these distances:
28 2 0.02
29 42 0.41
30 56 0.54
31 3 0.03
ACGTcount: A:0.39, C:0.10, G:0.24, T:0.27
Consensus pattern (29 bp):
TATGAAAAGGGATAGCTTCGGCTATAAAT
Found at i:32764863 original size:89 final size:90
Alignment explanation
Indices: 32764714--32764881 Score: 232
Period size: 89 Copynumber: 1.9 Consensus size: 90
32764704 CTTCGGATAT
* * * *
32764714 AAATTATGAAAAGGGATGGCTTCGGCTATTGATCTATGAAAAAGGATAGCTTTGACTATC-AATT
1 AAATTATGAAAAAGGATAGCTTCGGCTATTGAACTATGAAAAAGGATAACTTTGACTATCAAATT
* *
32764778 ATGAAAAGGGATGGTGACGACCATC
66 ACGAAAAAGGATGGTGACGACCATC
* **
32764803 AAATTATGAAAAAGGATAGCTTCGGCTATTGAACTATG-AAAAGAGATAATTTTGGTTATCAAAT
1 AAATTATGAAAAAGGATAGCTTCGGCTATTGAACTATGAAAAAG-GATAACTTTGACTATCAAAT
32764867 TACGAAAAAGGATGG
65 TACGAAAAAGGATGG
32764882 GTCAGCCATT
Statistics
Matches: 68, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
88 5 0.07
89 47 0.69
90 16 0.24
ACGTcount: A:0.39, C:0.10, G:0.23, T:0.27
Consensus pattern (90 bp):
AAATTATGAAAAAGGATAGCTTCGGCTATTGAACTATGAAAAAGGATAACTTTGACTATCAAATT
ACGAAAAAGGATGGTGACGACCATC
Found at i:32772323 original size:10 final size:10
Alignment explanation
Indices: 32772310--32772336 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
32772300 TGTTTTGGAG
32772310 TGTGTTTGAA
1 TGTGTTTGAA
32772320 TGTGTTTGAA
1 TGTGTTTGAA
32772330 TGTGTTT
1 TGTGTTT
32772337 TGGTCATATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.15, C:0.00, G:0.30, T:0.56
Consensus pattern (10 bp):
TGTGTTTGAA
Found at i:32772665 original size:55 final size:54
Alignment explanation
Indices: 32772550--32772680 Score: 165
Period size: 55 Copynumber: 2.4 Consensus size: 54
32772540 TCAGCACGGT
* * *
32772550 TGTGTGACCATATTTCAAATATACACACGATCTAGCACAAGGCCTGCGACATGG
1 TGTGTGACCATATTTCGAATATACACACGATCTAGCACAAGGCCTGCGACACGC
* * *
32772604 TCGTGTGACCATATTTCGAATATACACAC-AGTCTGGCACATGGCCTGTGACACGAC
1 T-GTGTGACCATATTTCGAATATACACACGA-TCTAGCACAAGGCCTGCGACACG-C
*
32772660 TGTGTGACCTTATTTCGAATA
1 TGTGTGACCATATTTCGAATA
32772681 CCCACATGGG
Statistics
Matches: 67, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
54 2 0.03
55 64 0.96
56 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (54 bp):
TGTGTGACCATATTTCGAATATACACACGATCTAGCACAAGGCCTGCGACACGC
Found at i:32775386 original size:23 final size:21
Alignment explanation
Indices: 32775330--32775387 Score: 55
Period size: 21 Copynumber: 2.6 Consensus size: 21
32775320 TAAGGAGGTG
32775330 TAATGCTCTCCTTTTAATGAAA
1 TAATGCTC-CCTTTTAATGAAA
**
32775352 TAACAACT-CCTTTTAATGATATA
1 TAA-TGCTCCCTTTTAATGA-A-A
32775375 TAATGCTCCCTTT
1 TAATGCTCCCTTT
32775388 GTATGTAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 7
0.72 0.10 0.18
Matches are distributed among these distances:
21 11 0.39
22 6 0.21
23 11 0.39
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (21 bp):
TAATGCTCCCTTTTAATGAAA
Found at i:32787119 original size:18 final size:17
Alignment explanation
Indices: 32787086--32787124 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
32787076 TTTTATAAAT
32787086 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
32787104 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
32787121 TGTG
1 TGTG
32787125 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:32787383 original size:23 final size:23
Alignment explanation
Indices: 32787353--32787471 Score: 159
Period size: 23 Copynumber: 5.2 Consensus size: 23
32787343 GTTATTGATC
*
32787353 AGTGGTAGCTTCGGCTACATTTT
1 AGTGGTAGCTTCGGCTACATATT
* *
32787376 AGTGGTAGCTACAGCTACATATT
1 AGTGGTAGCTTCGGCTACATATT
*
32787399 AGTGGTAGCTTCGGCTACATTTT
1 AGTGGTAGCTTCGGCTACATATT
* *
32787422 AGTGGTAGCTAT-GGCTACGTATC
1 AGTGGTAGCT-TCGGCTACATATT
*
32787445 AGTGGTAGCTTCGGCTACATATC
1 AGTGGTAGCTTCGGCTACATATT
32787468 AGTG
1 AGTG
32787472 TGGCATTGAT
Statistics
Matches: 84, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
22 1 0.01
23 82 0.98
24 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.34
Consensus pattern (23 bp):
AGTGGTAGCTTCGGCTACATATT
Found at i:32787405 original size:46 final size:46
Alignment explanation
Indices: 32787350--32787464 Score: 194
Period size: 46 Copynumber: 2.5 Consensus size: 46
32787340 AGTGTTATTG
32787350 ATCAGTGGTAGCTTCGGCTACATTTTAGTGGTAGCTACAGCTACAT
1 ATCAGTGGTAGCTTCGGCTACATTTTAGTGGTAGCTACAGCTACAT
* ** *
32787396 ATTAGTGGTAGCTTCGGCTACATTTTAGTGGTAGCTATGGCTACGT
1 ATCAGTGGTAGCTTCGGCTACATTTTAGTGGTAGCTACAGCTACAT
32787442 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
32787465 ATCAGTGTGG
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 64 1.00
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (46 bp):
ATCAGTGGTAGCTTCGGCTACATTTTAGTGGTAGCTACAGCTACAT
Found at i:32796185 original size:50 final size:50
Alignment explanation
Indices: 32796045--32796243 Score: 197
Period size: 50 Copynumber: 3.9 Consensus size: 50
32796035 ACATTAAGAG
* * *
32796045 GATGAGA--TCCCATGTAAGACCATGTCTGGGATATGGCATTAGCATCATTGA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGA
*
32796096 GATTATGAGAGGT-CCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGA
1 G---ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA
** * *
32796148 GATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCTCCGA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA
* ** * * *
32796198 TATGAGAACTCCCATGTACGACCATATCTGGGATATGGCATTGGCA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
32796244 GTACAAAAAA
Statistics
Matches: 123, Mismatches: 19, Indels: 13
0.79 0.12 0.08
Matches are distributed among these distances:
49 9 0.07
50 70 0.57
51 1 0.01
52 3 0.02
54 7 0.06
55 32 0.26
56 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (50 bp):
GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA
Found at i:32802208 original size:35 final size:35
Alignment explanation
Indices: 32802147--32802215 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 35
32802137 ACTCTATGTT
* *
32802147 TGGCGTGTTTCGGTTAGACTAGCTCTTATGAGCAC
1 TGGCGTGTTTCAGTTAGACTAACTCTTATGAGCAC
*
32802182 TGGCGTGTTTCAGTTGGA-TCAACTCTTATGAGCA
1 TGGCGTGTTTCAGTTAGACT-AACTCTTATGAGCA
32802216 TTTGGTGTGT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
34 1 0.03
35 29 0.97
ACGTcount: A:0.19, C:0.19, G:0.28, T:0.35
Consensus pattern (35 bp):
TGGCGTGTTTCAGTTAGACTAACTCTTATGAGCAC
Found at i:32804958 original size:11 final size:10
Alignment explanation
Indices: 32804945--32804977 Score: 50
Period size: 9 Copynumber: 3.3 Consensus size: 10
32804935 TCAACTAATT
32804945 TTTTTTAT-A
1 TTTTTTATAA
32804954 TTTTTTATAA
1 TTTTTTATAA
32804964 TTTTTTAATAA
1 TTTTTT-ATAA
32804975 TTT
1 TTT
32804978 ATCTAAAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 8 0.36
10 7 0.32
11 7 0.32
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (10 bp):
TTTTTTATAA
Found at i:32805217 original size:15 final size:17
Alignment explanation
Indices: 32805172--32805209 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
32805162 AACTGGACCG
*
32805172 GAACTATCTCTAAACGA
1 GAACTATCTATAAACGA
32805189 GAACTATCTATAAACGA
1 GAACTATCTATAAACGA
32805206 GAAC
1 GAAC
32805210 ACTTTAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.45, C:0.21, G:0.13, T:0.21
Consensus pattern (17 bp):
GAACTATCTATAAACGA
Found at i:32813519 original size:13 final size:13
Alignment explanation
Indices: 32813501--32813526 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32813491 AATTATTGCC
32813501 TACCATAAATTAG
1 TACCATAAATTAG
32813514 TACCATAAATTAG
1 TACCATAAATTAG
32813527 AAGGTTGGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (13 bp):
TACCATAAATTAG
Found at i:32819115 original size:12 final size:11
Alignment explanation
Indices: 32819098--32819132 Score: 54
Period size: 10 Copynumber: 3.2 Consensus size: 11
32819088 AACAAATTAT
32819098 CTCTCATATTTC
1 CTCTCA-ATTTC
32819110 CTCTCAA-TTC
1 CTCTCAATTTC
32819120 CTCTCAATTTC
1 CTCTCAATTTC
32819131 CT
1 CT
32819133 TCCAAAATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 10 0.45
11 6 0.27
12 6 0.27
ACGTcount: A:0.17, C:0.37, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:32820336 original size:7 final size:7
Alignment explanation
Indices: 32820326--32820350 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
32820316 ATTCGATTGA
32820326 TATTTAG
1 TATTTAG
32820333 TATTTAG
1 TATTTAG
32820340 TATTTAG
1 TATTTAG
32820347 TATT
1 TATT
32820351 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:32821593 original size:29 final size:28
Alignment explanation
Indices: 32821567--32822404 Score: 657
Period size: 29 Copynumber: 31.4 Consensus size: 28
32821557 AACCTAATTT
*
32821567 AACCCTAAACCTCTAACCTAAATTAATTAAA
1 AACCCT-AACC-CTAACCTAATTTAATT-AA
*
32821598 AACCCTAACCTCTAACCTAAATTAATTAAA
1 AACCCTAACC-CTAACCTAATTTAATT-AA
*
32821628 AACCCTAACCTCTAACCTAAATTAATTACA
1 AACCCTAACC-CTAACCTAATTTAATTA-A
*
32821658 AACCCTAACCCTAATCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATT-AA
32821687 AACCCTAACCCTAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATT-AA
*
32821716 AACCCTAACCTCTAACCTAAATT-ATTACA
1 AACCCTAACC-CTAACCTAATTTAATTA-A
32821745 AACCCTAACCCTAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATT-AA
* *
32821774 AACCTTAACCCTAACCTGATTTAATT-A
1 AACCCTAACCCTAACCTAATTTAATTAA
* *
32821801 AA----AACCCTAATCTAATTTAATTTA
1 AACCCTAACCCTAACCTAATTTAATTAA
32821825 AACCCTAACCCTAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATT-AA
* *
32821854 AACCCTAACCCT---TTAACTT-A--AA
1 AACCCTAACCCTAACCTAATTTAATTAA
*
32821876 AACCCTAACCTTAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATT-AA
*
32821905 AACCCTAACCCCTAACCTAAATTAATTACA
1 AACCCTAA-CCCTAACCTAATTTAATTA-A
*
32821935 AACTCTAACCCTAACCTAATTTAATTAA
1 AACCCTAACCCTAACCTAATTTAATTAA
*
32821963 AA----ACCCCTAACCTAATTTAATT--
1 AACCCTAACCCTAACCTAATTTAATTAA
*
32821985 AA----AACCCTAACCTAATTTAACCCT-A
1 AACCCTAACCCTAACCTAATTTAA--TTAA
* **
32822010 AACTCTAA-CCTAAATTAA-TT-A--AA
1 AACCCTAACCCTAACCTAATTTAATTAA
*
32822033 AACCCTAACCCCTAACCTAAATTAATTATA
1 AACCCTAA-CCCTAACCTAATTTAATTA-A
32822063 AACCCTAACCCTAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATT-AA
* *
32822092 AACCCTAACCCT---TTAACTT-A--AA
1 AACCCTAACCCTAACCTAATTTAATTAA
*
32822114 AACCCTAACCTTAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATT-AA
*
32822143 AACCCTAAACCCT----TAACTT-A--AA
1 AACCCT-AACCCTAACCTAATTTAATTAA
*
32822165 AACCCTAACCTTAACCTAATTTAATT-A
1 AACCCTAACCCTAACCTAATTTAATTAA
32822192 AA----AACCCTAACCTAATTTAATTAA
1 AACCCTAACCCTAACCTAATTTAATTAA
*
32822216 AA----A-CCTTAACCTAATTTAATTAA
1 AACCCTAACCCTAACCTAATTTAATTAA
32822239 AACCCTAAACCCT----TAA-TT-A--AA
1 AACCCT-AACCCTAACCTAATTTAATTAA
*
32822260 AACCCTAACCTTAACCTAATTTAATT-A
1 AACCCTAACCCTAACCTAATTTAATTAA
32822287 AA----AACCCTAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATT-AA
*
32822312 AACCCTAAACCCT----TAACTT-A--AA
1 AACCCT-AACCCTAACCTAATTTAATTAA
*
32822334 AACCCTAACCTTAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATT-AA
32822363 AACCCTAACCCTAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATT-AA
32822392 AACCCTAAACCCT
1 AACCCT-AACCCT
32822405 TAACTTAAAA
Statistics
Matches: 677, Mismatches: 47, Indels: 167
0.76 0.05 0.19
Matches are distributed among these distances:
20 5 0.01
21 18 0.03
22 61 0.09
23 86 0.13
24 32 0.05
25 42 0.06
26 28 0.04
27 12 0.02
28 43 0.06
29 218 0.32
30 126 0.19
31 6 0.01
ACGTcount: A:0.45, C:0.27, G:0.00, T:0.29
Consensus pattern (28 bp):
AACCCTAACCCTAACCTAATTTAATTAA
Found at i:32821830 original size:22 final size:23
Alignment explanation
Indices: 32821751--32822424 Score: 327
Period size: 23 Copynumber: 26.5 Consensus size: 23
32821741 TACAAACCCT
32821751 AACCCTAACCTAATTTAATTAAAAA
1 AACCCTAACCTAATTTAATT--AAA
*
32821776 CCTTAACCCTAACCTGATTTAATTAAA
1 ----AACCCTAACCTAATTTAATTAAA
*
32821803 AACCCTAATCTAATTTAATTTAAA
1 AACCCTAACCTAATTTAA-TTAAA
32821827 CCCTAACCCTAACCTAATTTAATTAAA
1 ----AACCCTAACCTAATTTAATTAAA
*
32821854 AACCCTAACC--CTTTAACTTAAA
1 AACCCTAACCTAATTTAA-TTAAA
32821876 AACCCTAACCTTAACCTAATTTAATTAAA
1 AA--C---CC-TAACCTAATTTAATTAAA
*
32821905 AACCCTAACCCCTAACCTAAATTAATTACA
1 AACCCTAA--CCTAA--T---TTAATTAAA
*
32821935 AACTCTAACCCTAACCTAATTTAATTAAA
1 AACCCT------AACCTAATTTAATTAAA
32821964 AACCCCTAACCTAATTTAATT-AA
1 AA-CCCTAACCTAATTTAATTAAA
****
32821987 AACCCTAACCTAATTTAACCCTA
1 AACCCTAACCTAATTTAATTAAA
* *
32822010 AACTCTAACCTAAATTAATTAAA
1 AACCCTAACCTAATTTAATTAAA
32822033 AACCCTAACCCCTAACCTAAATTAATTATAA
1 AACCCTAA--CCTAA--T---TTAATTA-AA
*
32822064 ACCCTAACCCTAACCTAATTTAATTAAA
1 A-AC----CCTAACCTAATTTAATTAAA
*
32822092 AACCCTAACC--CTTTAACTTAAA
1 AACCCTAACCTAATTTAA-TTAAA
32822114 AACCCTAACCTTAACCTAATTTAATTAAA
1 AA--C---CC-TAACCTAATTTAATTAAA
*
32822143 AACCCTAAACCCTTAACTTAA--AAA
1 AACCCT-AA-CC-TAATTTAATTAAA
*
32822167 CCCTAACCTTAACCTAATTTAATTAAA
1 ----AACCCTAACCTAATTTAATTAAA
32822194 AACCCTAACCTAATTTAATTAAA
1 AACCCTAACCTAATTTAATTAAA
*
32822217 AACCTTAACCTAATTTAATT-AA
1 AACCCTAACCTAATTTAATTAAA
32822239 AACCCTAAACCCTTAA-TTAA--AAA
1 AACCCT-AA-CC-TAATTTAATTAAA
*
32822262 CCCTAACCTTAACCTAATTTAATTAAA
1 ----AACCCTAACCTAATTTAATTAAA
32822289 AACCCTAACCTAATTTAATTAAA
1 AACCCTAACCTAATTTAATTAAA
*
32822312 AACCCTAAACCCTTAACTTAA--AAA
1 AACCCT-AA-CC-TAATTTAATTAAA
*
32822336 CCCTAACCTTAACCTAATTTAATTAAAAA
1 ----AACCCTAACCTAATTTAATT--AAA
32822365 CCCTAACCCTAACCTAATTTAATTAAA
1 ----AACCCTAACCTAATTTAATTAAA
*
32822392 AACCCTAAACC---CTTAACTTAAA
1 AACCCT-AACCTAATTTAA-TTAAA
32822414 AACCCTAACCT
1 AACCCTAACCT
32822425 TAACGTAATG
Statistics
Matches: 522, Mismatches: 38, Indels: 177
0.71 0.05 0.24
Matches are distributed among these distances:
21 18 0.03
22 48 0.09
23 145 0.28
24 48 0.09
25 37 0.07
26 20 0.04
27 34 0.07
28 40 0.08
29 76 0.15
30 33 0.06
31 3 0.01
32 3 0.01
34 10 0.02
36 7 0.01
ACGTcount: A:0.45, C:0.27, G:0.00, T:0.29
Consensus pattern (23 bp):
AACCCTAACCTAATTTAATTAAA
Found at i:32821847 original size:51 final size:51
Alignment explanation
Indices: 32821551--32822372 Score: 512
Period size: 51 Copynumber: 15.6 Consensus size: 51
32821541 ATGTAATAAA
**** *
32821551 AACCCTAACCTAATTTAACCCTAAACCTCTAACCTAAATTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACC-CTAACCTAATTTAATT-AAAACCCT
*
32821604 AACCTCTAACCTAAATTAATTAAAAACCCTAACCTCTAACCTAAATTAATTACAAACCCT
1 AACC-CTAACCTAATTTAATTAAAAACCCTAA-C-CTAA--T---TTAATTA-AAACCCT
*
32821664 AACCCTAATCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATT--AAA----AACCCTAACCTAATTTAATT-AAAACCCT
* *
32821722 AACCTCTAACCTAAATT-ATTACAAACCCTAACCCTAACCTAATTTAATTAAAAACCTT
1 AACC-CTAACCTAATTTAATT--AAA----AACCCTAACCTAATTTAATT-AAAACCCT
* * *
32821780 AACCCTAACCTGATTTAATTAAAAACCCTAATCTAATTTAATTTAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCTAACCTAATTTAATTAAAACCCT
*
32821831 AACCCTAACCTAATTTAATTAAAAACCCTAACC--CTTTAACTTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCTAACCTAATTTAA-TT-AAAACCCT
* *
32821882 AACCTTAACCTAATTTAATTAAAAACCCTAACCCCTAACCTAAATTAATTACAAACTCT
1 AACCCTAACCTAATTTAATTAAAAACCCTAA--CCTAA--T---TTAATTA-AAACCCT
32821941 AACCCTAACCTAATTTAATTAAAAACCCCTAACCTAATTTAATT--AA----
1 AACCCTAACCTAATTTAATTAAAAA-CCCTAACCTAATTTAATTAAAACCCT
**** * *
32821987 AACCCTAACCTAATTTAACCCTAAACTCTAACCTAAATTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCTAACCTAATTTAATT-AAAACCCT
*
32822039 AACCCCTAACCTAAATTAATTATAAACCCTAACCCTAACCTAATTTAATTAAAAACCCT
1 AA-CCCTAACCTAATTTAA-T-TAAA----AACCCTAACCTAATTTAATT-AAAACCCT
* * *
32822098 AACCCT---TTAACTTAA--AAACCCTAACCTTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAA----AACCCTAACCTAATTTAATT-AAAACCCT
* ***** *
32822149 AAACCCTTAACTTAA---AAACCCTAACCTTAACCTAATTTAATT-AAA----
1 -AACCC-TAACCTAATTTAATTAAAAACCCTAACCTAATTTAATTAAAACCCT
*
32822194 AACCCTAACCTAATTTAATTAAAAACCTTAACCTAATTTAATTAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCTAACCTAATTTAATTAAAACCCT
*
32822245 AAACCCT----TAA-TTAA--AAACCCTAACCTTAACCTAATTTAATT-AAA----
1 -AACCCTAACCTAATTTAATTAAA----AACCCTAACCTAATTTAATTAAAACCCT
*
32822289 AACCCTAACCTAATTTAATTAAAAACCCTAAACC---CTTAACTTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT-AACCTAATTTAA-TT-AAAACCCT
*
32822340 AACCTTAACCTAATTTAATTAAAAACCCTAACC
1 AACCCTAACCTAATTTAATTAAAAACCCTAACC
32822373 CTAACCTAAT
Statistics
Matches: 636, Mismatches: 53, Indels: 163
0.75 0.06 0.19
Matches are distributed among these distances:
43 13 0.02
44 9 0.01
45 21 0.03
46 48 0.08
47 17 0.03
48 12 0.02
49 28 0.04
50 11 0.02
51 157 0.25
52 32 0.05
53 34 0.05
54 19 0.03
55 12 0.02
56 8 0.01
57 11 0.02
58 73 0.11
59 87 0.14
60 27 0.04
61 4 0.01
63 4 0.01
64 1 0.00
65 8 0.01
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.29
Consensus pattern (51 bp):
AACCCTAACCTAATTTAATTAAAAACCCTAACCTAATTTAATTAAAACCCT
Found at i:32821887 original size:21 final size:21
Alignment explanation
Indices: 32821844--32821885 Score: 75
Period size: 22 Copynumber: 2.0 Consensus size: 21
32821834 CCTAACCTAA
32821844 TTTAATTAAAAACCCTAACCC
1 TTTAATTAAAAACCCTAACCC
32821865 TTTAACTTAAAAACCCTAACC
1 TTTAA-TTAAAAACCCTAACC
32821886 TTAACCTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.43, C:0.29, G:0.00, T:0.29
Consensus pattern (21 bp):
TTTAATTAAAAACCCTAACCC
Found at i:32822125 original size:21 final size:21
Alignment explanation
Indices: 32822082--32822123 Score: 75
Period size: 22 Copynumber: 2.0 Consensus size: 21
32822072 CCTAACCTAA
32822082 TTTAATTAAAAACCCTAACCC
1 TTTAATTAAAAACCCTAACCC
32822103 TTTAACTTAAAAACCCTAACC
1 TTTAA-TTAAAAACCCTAACC
32822124 TTAACCTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.43, C:0.29, G:0.00, T:0.29
Consensus pattern (21 bp):
TTTAATTAAAAACCCTAACCC
Found at i:32822413 original size:51 final size:49
Alignment explanation
Indices: 32822054--32822433 Score: 411
Period size: 51 Copynumber: 7.6 Consensus size: 49
32822044 CTAACCTAAA
* *
32822054 TTAATTATAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCC
1 TTAATTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCC
32822103 TTTAACTTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCTAAACCC
1 -TTAA-TTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCT-AACCC
32822155 TTAACTTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCTAA-CC
1 TTAA-TTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCC
32822204 -TAATTTAATTAAA----AACCTTAACCTAATTTAATT-AAAACCCTAAACCC
1 TTAA-TTAA--AAACCCTAACCTTAACCTAATTTAATTAAAAACCCT-AACCC
*
32822251 TTAATTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACC---C
* ***** * *
32822303 TTAATTAAAAACCCTAAACCCTTAACTTAA---AAACCCTAACCTTAACCTAAT
1 TTAATTAAAAACCCT-AA-CCTTAACCTAATTTAATTAAAAACCCTAACC---C
*
32822354 TTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACCC
1 TTAATTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCT-AACCC
*
32822404 TTAACTTAAAAACCCTAACCTTAACGTAAT
1 TTAA-TTAAAAACCCTAACCTTAACCTAAT
32822434 GTTAGATTTG
Statistics
Matches: 286, Mismatches: 22, Indels: 43
0.81 0.06 0.12
Matches are distributed among these distances:
45 11 0.04
46 22 0.08
47 6 0.02
48 10 0.03
49 35 0.12
50 23 0.08
51 136 0.48
52 27 0.09
53 6 0.02
54 10 0.03
ACGTcount: A:0.45, C:0.26, G:0.00, T:0.29
Consensus pattern (49 bp):
TTAATTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCC
Found at i:32822629 original size:110 final size:110
Alignment explanation
Indices: 32822436--32822641 Score: 394
Period size: 110 Copynumber: 1.9 Consensus size: 110
32822426 AACGTAATGT
32822436 TAGATTTGGAAAAATGTTTTGACTGGTACTAACAAATAATAATTTTACATAATTTGATAATTTTA
1 TAGATTTGGAAAAATGTTTTGACTGGTACTAACAAATAATAATTTTACATAATTTGATAATTTTA
32822501 CTAACCATTAATACAATTTTTTGACTTAATAATTTTACATTCACA
66 CTAACCATTAATACAATTTTTTGACTTAATAATTTTACATTCACA
* *
32822546 TAGATTTGGAAAAATGTTTTGACTGGTACTAACAATTAATAATTTTATATAATTTGATAATTTTA
1 TAGATTTGGAAAAATGTTTTGACTGGTACTAACAAATAATAATTTTACATAATTTGATAATTTTA
32822611 CTAACCATTAATACAATTTTTTGACTTAATA
66 CTAACCATTAATACAATTTTTTGACTTAATA
32822642 CAATTTATCA
Statistics
Matches: 94, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
110 94 1.00
ACGTcount: A:0.39, C:0.10, G:0.09, T:0.43
Consensus pattern (110 bp):
TAGATTTGGAAAAATGTTTTGACTGGTACTAACAAATAATAATTTTACATAATTTGATAATTTTA
CTAACCATTAATACAATTTTTTGACTTAATAATTTTACATTCACA
Found at i:32822658 original size:17 final size:18
Alignment explanation
Indices: 32822617--32822658 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
32822607 TTTACTAACC
* *
32822617 ATTAATACAATTTTTTGA
1 ATTAATACAATTTTATCA
*
32822635 CTTAATACAA-TTTATCA
1 ATTAATACAATTTTATCA
32822652 ATTAATA
1 ATTAATA
32822659 ATTTCACAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.45
Consensus pattern (18 bp):
ATTAATACAATTTTATCA
Found at i:32825900 original size:123 final size:125
Alignment explanation
Indices: 32825673--32826018 Score: 500
Period size: 126 Copynumber: 2.8 Consensus size: 125
32825663 CCCAAACATG
32825673 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* * * * *
32825738 TAGAAGCAATTTTATATTATTTGCTCATAAACGT-CAAAAAA-ACTATTTCTCACATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACATAAAAAAAAGACTATTTCTCACATGAC
* * * * *
32825796 CTACTGTAGCAAAAGCGCG-CTGATGAGGCCCCGATTTCACAAATTCTTCTCAAAGAGCATCCTG
1 CTACTGTAGCAAAAGCGCGTC-CACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTG
* ** *
32825860 CTAGAAGCGATTTTATACTATTTGCTCAGAAACATAAAAAAAATGATTATTTCTTTCGTGAC
65 CTAGAAGCGATTTTATACTATTTGCTCAGAAACATAAAAAAAA-GACTATTTCTCACATGAC
*
32825922 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCATAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
**
32825987 TAGAAGCGATTTTATACTATTTTATCAGAAAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAAC
32826019 GTCAACTCAA
Statistics
Matches: 196, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
122 1 0.01
123 88 0.45
124 6 0.03
126 100 0.51
127 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
TAGAAGCGATTTTATACTATTTGCTCAGAAACATAAAAAAAAGACTATTTCTCACATGAC
Found at i:32827375 original size:46 final size:44
Alignment explanation
Indices: 32827298--32827399 Score: 177
Period size: 46 Copynumber: 2.3 Consensus size: 44
32827288 ATATGATCTG
*
32827298 AAAAGAAGAAATAAAAAAATTGTAATAAAGAAATTGAAAATAAT
1 AAAAGAAGAAATAAAAAAATTGTAATAAAGAAATCGAAAATAAT
32827342 AAAAGAAGAAATAAAAAAAATTTGTAATAAAGAAATCGAAAATAAT
1 AAAAGAAGAAAT-AAAAAAA-TTGTAATAAAGAAATCGAAAATAAT
32827388 AAAAGAAGAAAT
1 AAAAGAAGAAAT
32827400 TTGAGAATAA
Statistics
Matches: 55, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
44 12 0.22
45 7 0.13
46 36 0.65
ACGTcount: A:0.69, C:0.01, G:0.12, T:0.19
Consensus pattern (44 bp):
AAAAGAAGAAATAAAAAAATTGTAATAAAGAAATCGAAAATAAT
Found at i:32827432 original size:17 final size:18
Alignment explanation
Indices: 32827406--32827439 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
32827396 AAATTTGAGA
32827406 ATAAAAAAATAA-AAATC
1 ATAAAAAAATAAGAAATC
*
32827423 ATAAATAAATAAGAAAT
1 ATAAAAAAATAAGAAAT
32827440 AGAAATTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (18 bp):
ATAAAAAAATAAGAAATC
Found at i:32830610 original size:75 final size:75
Alignment explanation
Indices: 32830522--32830664 Score: 216
Period size: 75 Copynumber: 1.9 Consensus size: 75
32830512 ACTAGCCTGG
* *
32830522 TAAACCGACAAATATAATGGTGTGCCCAACACTAGTCAAATAAA-CTGACAAAGGTTACACCCAG
1 TAAACCAACAAATATAATGGTGTGCCCAACACTAGTCAAATAAATC-GACAAAGATTACACCCAG
32830586 CGCTTGTCTAA
65 CGCTTGTCTAA
* * * *
32830597 TAAACCAATAAATATAATGGTGTGCCCAGCACTAGTCGAATAAATCGACAAAGATTGCACCCAGC
1 TAAACCAACAAATATAATGGTGTGCCCAACACTAGTCAAATAAATCGACAAAGATTACACCCAGC
32830662 GCT
66 GCT
32830665 AGTTGGATAA
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
75 60 0.98
76 1 0.02
ACGTcount: A:0.38, C:0.24, G:0.17, T:0.21
Consensus pattern (75 bp):
TAAACCAACAAATATAATGGTGTGCCCAACACTAGTCAAATAAATCGACAAAGATTACACCCAGC
GCTTGTCTAA
Found at i:32831174 original size:11 final size:11
Alignment explanation
Indices: 32831151--32831188 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
32831141 TGTTTCTTTT
32831151 ATTTT-ATTATC
1 ATTTTCATT-TC
32831162 ATTTTCATTTC
1 ATTTTCATTTC
*
32831173 ATTTTCATTTT
1 ATTTTCATTTC
32831184 ATTTT
1 ATTTT
32831189 ATTCTAGTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 22 0.88
12 3 0.12
ACGTcount: A:0.21, C:0.11, G:0.00, T:0.68
Consensus pattern (11 bp):
ATTTTCATTTC
Found at i:32832820 original size:51 final size:51
Alignment explanation
Indices: 32832740--32833082 Score: 292
Period size: 51 Copynumber: 6.8 Consensus size: 51
32832730 TATCGATGAA
* * * *
32832740 CACGTGTGTAATACTGTGTGAAGGATACTACGTGTATCGATAAATAATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATATTGGT
* * * * * * * *
32832791 CACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCAAGAAGTTTTGAG-
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATATTG-GT
* * *
32832842 CACGTGTGTAGTACTGTGTGAAAGCTACTACGTGTATCGGTAAACTA-TGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAA-TATTGGT
* * * * * *
32832893 TACATGTGTGGTACTAAGTGAAGGCTACTATG-GATACCGGA-AAACT-TTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG-TATC-GATAAA-TATTGGT
* * * * *
32832944 CACGTATGTAGTACTATGTGAAGGCTACTACGT-CAGCTATAAA-ACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATA-TTGGT
* * *
32832994 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG-AACTG-TAAA-ACTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATC-GATAAATATTGGT
32833043 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
32833083 ATGATAAAAA
Statistics
Matches: 231, Mismatches: 47, Indels: 29
0.75 0.15 0.09
Matches are distributed among these distances:
49 40 0.17
50 52 0.23
51 136 0.59
52 3 0.01
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (51 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATATTGGT
Found at i:32832916 original size:102 final size:101
Alignment explanation
Indices: 32832740--32833082 Score: 362
Period size: 102 Copynumber: 3.4 Consensus size: 101
32832730 TATCGATGAA
* *
32832740 CACGTGTGTAATACTGTGTGAAGGATACTACGTGTATCGATAAATAATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATAATGGTCACATGTGTAGTAC
*
32832805 TAAGTGAAGGCTACTATGTG-TACC-AAGAAGTTTTGAG-
66 TAAGTGAAGGCTACTATG-GATACCGAA-AA-CTTTG-GT
* * * *
32832842 CACGTGTGTAGTACTGTGTGAAAGCTACTACGTGTATCGGTAAACT-ATGGTTACATGTGTGGTA
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAA-TAATGGTCACATGTGTAGTA
32832906 CTAAGTGAAGGCTACTATGGATACCGGAAAACTTTGGT
65 CTAAGTGAAGGCTACTATGGATACC-GAAAACTTTGGT
* * * * * * * *
32832944 CACGTATGTAGTACTATGTGAAGGCTACTACGT-CAGCTATAAA-ACTTGATCACGTGTGTAGTA
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATA-ATGGTCACATGTGTAGTA
* * * *
32833007 CTATGTGAAGGCTACTACGTGA-ACTGTAAAAC--TGAT
65 CTAAGTGAAGGCTACTATG-GATACCG-AAAACTTTGGT
*
32833043 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGA
32833083 ATGATAAAAA
Statistics
Matches: 204, Mismatches: 27, Indels: 22
0.81 0.11 0.09
Matches are distributed among these distances:
99 35 0.17
100 4 0.02
101 45 0.22
102 115 0.56
103 3 0.01
104 2 0.01
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (101 bp):
CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATAATGGTCACATGTGTAGTAC
TAAGTGAAGGCTACTATGGATACCGAAAACTTTGGT
Found at i:32833013 original size:50 final size:50
Alignment explanation
Indices: 32832933--32833075 Score: 225
Period size: 50 Copynumber: 2.9 Consensus size: 50
32832923 TGGATACCGG
* * *
32832933 AAAACTTTGGTCACGTATGTAGTACTATGTGAAGGCTACTACGTCAGCTAT
1 AAAAC-TTGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTCAACTAT
* *
32832984 AAAACTTGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACTGT
1 AAAACTTGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTCAACTAT
32833034 AAAAC-TGATCACGTGTGTAGTACTATGTGAAGGCTACTACGT
1 AAAACTTGATCACGTGTGTAGTACTATGTGAAGGCTACTACGT
32833076 GTATCGAATG
Statistics
Matches: 87, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
49 37 0.43
50 45 0.52
51 5 0.06
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (50 bp):
AAAACTTGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTCAACTAT
Found at i:32842495 original size:20 final size:21
Alignment explanation
Indices: 32842456--32842495 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
32842446 ATTTTTCTAT
**
32842456 CACTTCAATTTTTGCTCTGTC
1 CACTTCAATTCCTGCTCTGTC
32842477 CACTTCAATTCCT-CTCTGT
1 CACTTCAATTCCTGCTCTGT
32842496 GATATCCTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.15, C:0.33, G:0.07, T:0.45
Consensus pattern (21 bp):
CACTTCAATTCCTGCTCTGTC
Found at i:32851282 original size:22 final size:22
Alignment explanation
Indices: 32851254--32851298 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
32851244 AGCATCATTT
32851254 TACCACCATTATATTACTTCTA
1 TACCACCATTATATTACTTCTA
32851276 TACCACCATTATATTACTTCTA
1 TACCACCATTATATTACTTCTA
32851298 T
1 T
32851299 CTATCACACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.27, G:0.00, T:0.42
Consensus pattern (22 bp):
TACCACCATTATATTACTTCTA
Found at i:32852912 original size:125 final size:125
Alignment explanation
Indices: 32852586--32852962 Score: 623
Period size: 125 Copynumber: 3.0 Consensus size: 125
32852576 TTAGAGTTTT
* ** **
32852586 TAGGTCCTGGAAGAAATAATTTTAAGTTGACGTTTCTGATAAAATAGTATAAAATCGCTTCTAGC
1 TAGGTCATGGAAGAAATAATTTT-TTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGC
*
32852651 AGGATGCTATTTGAGAAGAATTTGTG-AAATCGCGCCCTAGTGGACGCGCTTTTGCTACAG
65 AGGATGCTATTTGAGAAGAATTTGTGAAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
* *
32852711 TAGGTCATGGAAGAAATCA-TTTTTTTGACGTTTCTGAGCAAATTGTATAAAATCGCTTCTAGCA
1 TAGGTCATGGAAGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCA
* *
32852775 GGATGCTATTTGAGAAGAATTTGTGAAAATCGTGCCCTCGTGGACACGCTTTTGCTACAG
66 GGATGCTATTTGAGAAGAATTTGTGAAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
*
32852835 TAGGTCATGGAAGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGGA
1 TAGGTCATGGAAGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCA
*
32852900 GGATGCTATTTGAGAAGAATTTATGAAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
66 GGATGCTATTTGAGAAGAATTTGTGAAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
32852960 TAG
1 TAG
32852963 CATGTTTGGG
Statistics
Matches: 234, Mismatches: 16, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
123 62 0.26
124 52 0.22
125 120 0.51
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.32
Consensus pattern (125 bp):
TAGGTCATGGAAGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCA
GGATGCTATTTGAGAAGAATTTGTGAAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
Found at i:32853907 original size:23 final size:23
Alignment explanation
Indices: 32853846--32854489 Score: 876
Period size: 23 Copynumber: 28.8 Consensus size: 23
32853836 AGTTTAGGGT
*
32853846 TTAGGG-TTTTAATTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
32853868 TTAGGG-TTTTAATTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
32853890 TTAGGGTTTTTAAGTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
32853913 TTAGAGTTTTTAAGTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
* *
32853936 TTAGGATTTTTAATTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
32853959 TTAGGGTTTTTAAGTTAA--GGG
1 TTAGGGTTTTTAAGTTAATTAGG
32853980 TTAGGGTTTTTAAGTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
32854003 TTAGGGTTTTTAATTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
* * *
32854026 TTAGTGTTTTTAATTTAA--GGG
1 TTAGGGTTTTTAAGTTAATTAGG
32854047 TTAGGGTTTTTAAGTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
32854070 TTAGGGTTTTTAATTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
**
32854093 TTAGGG-TTTTAAGTT-A-GGGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
32854113 TTAAGGTTTTTAAGTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
32854136 TTAGGGTTTTTAAGTTAA--GGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
32854157 TTAGGGTTTTTAAGTTAACTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
32854180 TTAGGGTTTGTAAGTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
32854203 TTAGGGTTTTTAAGTTAA--GGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
32854224 TTAGGGTTTTTAATTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
32854247 TTAGGGTTTTTAATTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
32854270 TTAGGGTTTTTAAGTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
32854293 TTAGGGTTTTTAAGTTAA--GGG
1 TTAGGGTTTTTAAGTTAATTAGG
32854314 TTAGGGTTTTTAAGTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
32854337 TTAGGGTTTTTAATTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
32854360 TTAGGGTTTTTAAGTTAA--GGG
1 TTAGGGTTTTTAAGTTAATTAGG
* *
32854381 TTAGGGTTCTTAATTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
32854404 TTAGGGTTTTTAATTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
* **
32854427 TTAGGGTTTTTAAGTTAA-GAAT
1 TTAGGGTTTTTAAGTTAATTAGG
*
32854449 TTAAGGTTTTTAA-TTAAATTAGG
1 TTAGGGTTTTTAAGTT-AATTAGG
32854472 TTAGGGTTTTTAAGTTAA
1 TTAGGGTTTTTAAGTTAA
32854490 GGGTATTAAT
Statistics
Matches: 553, Mismatches: 50, Indels: 37
0.86 0.08 0.06
Matches are distributed among these distances:
20 7 0.01
21 127 0.23
22 52 0.09
23 365 0.66
24 2 0.00
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.48
Consensus pattern (23 bp):
TTAGGGTTTTTAAGTTAATTAGG
Found at i:32853998 original size:90 final size:91
Alignment explanation
Indices: 32853846--32854489 Score: 845
Period size: 90 Copynumber: 7.2 Consensus size: 91
32853836 AGTTTAGGGT
* *
32853846 TTAGGG-TTTTAATTTAATTAGGTTAGGG-TTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAAT
1 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAA-TAGGTTAGGGTTTTTAAGTTAAT
*
32853909 TAGGTTAGAGTTTTTAAGTTAATTAGG
65 TAGGTTAGGGTTTTTAAGTTAATTAGG
* * *
32853936 TTAGGATTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAA-GGGTTAGGGTTTTTAAGTTAATT
1 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAATAGGTTAGGGTTTTTAAGTTAATT
*
32854000 AGGTTAGGGTTTTTAATTTAATTAGG
66 AGGTTAGGGTTTTTAAGTTAATTAGG
* * * *
32854026 TTAGTGTTTTTAATTTAA--GGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAAT
1 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAA-TAGGTTAGGGTTTTTAAGTTAAT
**
32854089 TAGGTTAGGG-TTTTAAGTT-A-GGGG
65 TAGGTTAGGGTTTTTAAGTTAATTAGG
* * *
32854113 TTAAGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAA-GGGTTAGGGTTTTTAAGTTAACT
1 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAATAGGTTAGGGTTTTTAAGTTAATT
*
32854177 AGGTTAGGGTTTGTAAGTTAATTAGG
66 AGGTTAGGGTTTTTAAGTTAATTAGG
* * *
32854203 TTAGGGTTTTTAAGTTAA--GGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAATTTAAT
1 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAA-TAGGTTAGGGTTTTTAAGTTAAT
32854266 TAGGTTAGGGTTTTTAAGTTAATTAGG
65 TAGGTTAGGGTTTTTAAGTTAATTAGG
* *
32854293 TTAGGGTTTTTAAGTTAA--GGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAAT
1 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAA-TAGGTTAGGGTTTTTAAGTTAAT
*
32854356 TAGGTTAGGGTTTTTAAGTTAA--GGG
65 TAGGTTAGGGTTTTTAAGTTAATTAGG
* * *
32854381 TTAGGGTTCTTAATTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAA-
1 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAA-TAGGTTAGGGTTTTTAAGTTAAT
* ** *
32854445 GAATTTAAGGTTTTTAA-TTAAATTAGG
65 TAGGTTAGGGTTTTTAAGTT-AATTAGG
32854472 TTAGGGTTTTTAAGTTAA
1 TTAGGGTTTTTAAGTTAA
32854490 GGGTATTAAT
Statistics
Matches: 494, Mismatches: 44, Indels: 31
0.87 0.08 0.05
Matches are distributed among these distances:
87 46 0.09
88 68 0.14
89 44 0.09
90 286 0.58
91 40 0.08
92 10 0.02
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.48
Consensus pattern (91 bp):
TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAATAGGTTAGGGTTTTTAAGTTAATT
AGGTTAGGGTTTTTAAGTTAATTAGG
Found at i:32854013 original size:67 final size:67
Alignment explanation
Indices: 32853836--32854489 Score: 946
Period size: 67 Copynumber: 9.7 Consensus size: 67
32853826 TGCTGAAAGG
* *
32853836 AGTTTAGGGTTTAGGG-TTTTAATTTAATTAGGTTAGGG-TTTTAATTTAATTAGGTTAGGGTTT
1 AGTTAAGGG-TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTT
32853899 TTA
65 TTA
* * *
32853902 AGTTAATTAGGTTAGAGTTTTTAAGTTAATTAGGTTAGGATTTTTAATTTAATTAGGTTAGGGTT
1 AGTTAA--GGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTT
32853967 TTTA
64 TTTA
*
32853971 AGTTAAGGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGTGTTTT
1 AGTTAAGGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTT
32854036 TA
66 TA
*
32854038 ATTTAAGGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGG-TTT
1 AGTTAAGGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTT
32854102 TA
66 TA
* * * *
32854104 AGTTAGGGGTTAAGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAA--GGGTTAGGGTTTT
1 AGTTAAGGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTT
32854167 TA
66 TA
* * * *
32854169 AGTTAACTAGGTTAGGGTTTGTAAGTTAATTAGGTTAGGGTTTTTAAGTTAA--GGGTTAGGGTT
1 AGTTAA--GGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTT
32854232 TTTA
64 TTTA
* * * *
32854236 ATTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTT
1 AGTTAA--GGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTT
32854301 TTTA
64 TTTA
32854305 AGTTAAGGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTT
1 AGTTAAGGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTT
32854370 TA
66 TA
* *
32854372 AGTTAAGGGTTAGGGTTCTTAATTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTT
1 AGTTAAGGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTT
32854437 TA
66 TA
** * *
32854439 AGTTAAGAATTTAAGGTTTTTAA-TTAAATTAGGTTAGGGTTTTTAAGTTAA
1 AGTTAAG-GGTTAGGGTTTTTAAGTT-AATTAGGTTAGGGTTTTTAATTTAA
32854490 GGGTATTAAT
Statistics
Matches: 541, Mismatches: 36, Indels: 20
0.91 0.06 0.03
Matches are distributed among these distances:
64 8 0.01
65 10 0.02
66 56 0.10
67 357 0.66
68 57 0.11
69 53 0.10
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.48
Consensus pattern (67 bp):
AGTTAAGGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTT
TA
Found at i:32854995 original size:18 final size:18
Alignment explanation
Indices: 32854972--32855011 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
32854962 GACGCAGAAA
*
32854972 AGGATACATATAAGGGTT
1 AGGATACATATAAGGGCT
32854990 AGGATACATATAAGGGCT
1 AGGATACATATAAGGGCT
32855008 AGGA
1 AGGA
32855012 AACGCACCTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.40, C:0.07, G:0.30, T:0.23
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:32855672 original size:7 final size:7
Alignment explanation
Indices: 32855662--32855686 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
32855652 TTATATACAT
32855662 AATACTA
1 AATACTA
32855669 AATACTA
1 AATACTA
32855676 AATACTA
1 AATACTA
32855683 AATA
1 AATA
32855687 TCAATCGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:32855894 original size:20 final size:20
Alignment explanation
Indices: 32855857--32855894 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
32855847 TTTATTTTAA
*
32855857 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
32855877 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
32855895 TACATCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:32856941 original size:14 final size:11
Alignment explanation
Indices: 32856898--32856937 Score: 64
Period size: 11 Copynumber: 3.6 Consensus size: 11
32856888 AAGAGAATTT
32856898 TTGA-AGGAAA
1 TTGAGAGGAAA
32856908 TTGAGAGGAAA
1 TTGAGAGGAAA
32856919 TTGAGAGGAAA
1 TTGAGAGGAAA
32856930 TTTGAGAG
1 -TTGAGAG
32856938 AGGATTAGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 4 0.14
11 17 0.61
12 7 0.25
ACGTcount: A:0.42, C:0.00, G:0.35, T:0.23
Consensus pattern (11 bp):
TTGAGAGGAAA
Found at i:32861712 original size:48 final size:48
Alignment explanation
Indices: 32861635--32861730 Score: 129
Period size: 48 Copynumber: 2.0 Consensus size: 48
32861625 TGGGCCGGCA
* *
32861635 TTGGCCCAAACCCACGTGGCCGCAAACTGAACTCGCATGATAAGATTG
1 TTGGCCCAAACACACGAGGCCGCAAACTGAACTCGCATGATAAGATTG
** * * *
32861683 TTGGCCCAAACACACGAGGTTGCAGACTGAGCTCGCATGATGAGATTG
1 TTGGCCCAAACACACGAGGCCGCAAACTGAACTCGCATGATAAGATTG
32861731 CGGACTGAGC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.28, C:0.26, G:0.26, T:0.20
Consensus pattern (48 bp):
TTGGCCCAAACACACGAGGCCGCAAACTGAACTCGCATGATAAGATTG
Found at i:32864727 original size:55 final size:54
Alignment explanation
Indices: 32864666--32864798 Score: 142
Period size: 55 Copynumber: 2.4 Consensus size: 54
32864656 TTTTTATTCA
*** * *
32864666 TATAATAATTATATTAAGAATGTTATTAAATTATATATTATTTTATTAAATTTTATT
1 TATAATAATTATATTAA-AATAAGATTAAATTATATA-T-TTTTATTAAAATATATT
*
32864723 TAATAATAATTATATTAAAATAAGATTAAATTATTTATTTTTATTAAAATATATT
1 T-ATAATAATTATATTAAAATAAGATTAAATTATATATTTTTATTAAAATATATT
*
32864778 TAAAAATAAATT-TATTAAAAT
1 T-ATAAT-AATTATATTAAAAT
32864799 TTAATAACAA
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
55 30 0.45
56 5 0.07
57 16 0.24
58 16 0.24
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (54 bp):
TATAATAATTATATTAAAATAAGATTAAATTATATATTTTTATTAAAATATATT
Found at i:32864986 original size:16 final size:16
Alignment explanation
Indices: 32864965--32865034 Score: 79
Period size: 16 Copynumber: 4.4 Consensus size: 16
32864955 GAAATTACTG
*
32864965 ATTACAACTTTATTCC
1 ATTACAACTATATTCC
32864981 ATTACAACTATATTCC
1 ATTACAACTATATTCC
* * *
32864997 ATTACAGCTCTATTCA
1 ATTACAACTATATTCC
*
32865013 ATTAC-AGTCATATTCC
1 ATTACAACT-ATATTCC
32865029 ATTACA
1 ATTACA
32865035 GTGAACCAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
15 1 0.02
16 43 0.98
ACGTcount: A:0.34, C:0.24, G:0.03, T:0.39
Consensus pattern (16 bp):
ATTACAACTATATTCC
Found at i:32865011 original size:32 final size:32
Alignment explanation
Indices: 32864965--32865035 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 32
32864955 GAAATTACTG
* * *
32864965 ATTACAACTTTATTCCATTACAACT-ATATTCC
1 ATTACAGCTCTATTCAATTAC-ACTCATATTCC
*
32864997 ATTACAGCTCTATTCAATTACAGTCATATTCC
1 ATTACAGCTCTATTCAATTACACTCATATTCC
32865029 ATTACAG
1 ATTACAG
32865036 TGAACCAAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 2 0.06
32 32 0.94
ACGTcount: A:0.34, C:0.24, G:0.04, T:0.38
Consensus pattern (32 bp):
ATTACAGCTCTATTCAATTACACTCATATTCC
Found at i:32865595 original size:4 final size:4
Alignment explanation
Indices: 32865588--32865636 Score: 71
Period size: 4 Copynumber: 12.0 Consensus size: 4
32865578 TATTTGCTTG
* *
32865588 TAAA TAAA TAAA TAAA TAAA TAAAA TGAA TGAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA T-AAA TAAA TAAA TAAA TAAA TAAA TAAA
32865637 AGCTCTAGTT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
4 38 0.90
5 4 0.10
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:32865622 original size:21 final size:21
Alignment explanation
Indices: 32865589--32865636 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
32865579 ATTTGCTTGT
32865589 AAATAAATAAATAAATAAATA
1 AAATAAATAAATAAATAAATA
* *
32865610 AAATGAATGAATAAATAAAT-
1 AAATAAATAAATAAATAAATA
32865630 AAATAAA
1 AAATAAA
32865637 AGCTCTAGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 6 0.25
21 18 0.75
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.23
Consensus pattern (21 bp):
AAATAAATAAATAAATAAATA
Found at i:32867252 original size:16 final size:17
Alignment explanation
Indices: 32867221--32867253 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
32867211 ACAAAATCAA
32867221 AATTTATTTCCCAATTT
1 AATTTATTTCCCAATTT
32867238 AATTTATTT-CCAATTT
1 AATTTATTTCCCAATTT
32867254 GTTTAACTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.15, G:0.00, T:0.55
Consensus pattern (17 bp):
AATTTATTTCCCAATTT
Found at i:32876708 original size:27 final size:27
Alignment explanation
Indices: 32876642--32876709 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
32876632 CCCAAACTGA
*
32876642 TATAAAATGACTGTTATGCCCCCACGT
1 TATAAAATGACTATTATGCCCCCACGT
* * * *
32876669 GATAAAATAACTATTATGCCCCTATGT
1 TATAAAATGACTATTATGCCCCCACGT
*
32876696 TATAAATTGACTAT
1 TATAAAATGACTAT
32876710 ATGGTCTATG
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.34
Consensus pattern (27 bp):
TATAAAATGACTATTATGCCCCCACGT
Found at i:32880626 original size:6 final size:6
Alignment explanation
Indices: 32880613--32880642 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
32880603 AAAGAAATTC
32880613 AAAG-A AAAGAA AAAGAA AAAGAA AAAGAA A
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA A
32880643 GAGAGTTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.17
6 20 0.83
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:32880643 original size:27 final size:28
Alignment explanation
Indices: 32880587--32880644 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 28
32880577 ATTGCGAGCG
* **
32880587 AGAAAATGAAAATGAAAAAGAAATTCAA
1 AGAAAATGAAAAAGAAAAAGAAAAACAA
*
32880615 AGAAAA-GAAAAAGAAAAAGAAAAAGAA
1 AGAAAATGAAAAAGAAAAAGAAAAACAA
32880642 AGA
1 AGA
32880645 GAGTTTGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
27 20 0.77
28 6 0.23
ACGTcount: A:0.74, C:0.02, G:0.17, T:0.07
Consensus pattern (28 bp):
AGAAAATGAAAAAGAAAAAGAAAAACAA
Found at i:32880673 original size:33 final size:34
Alignment explanation
Indices: 32880636--32880709 Score: 107
Period size: 33 Copynumber: 2.2 Consensus size: 34
32880626 AGAAAAAGAA
* *
32880636 AAAGAAAGAGAGTTTG-AAAAGAAATCGAGTG-AG
1 AAAGAAAAAGAGTCTGCAAAAGAAA-CGAGTGAAG
32880669 AAAGAAAAAGAGTCTGCAAAAGAAACGAGTGAAG
1 AAAGAAAAAGAGTCTGCAAAAGAAACGAGTGAAG
32880703 AAAGAAA
1 AAAGAAA
32880710 TCAAGTAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
33 20 0.54
34 17 0.46
ACGTcount: A:0.57, C:0.05, G:0.27, T:0.11
Consensus pattern (34 bp):
AAAGAAAAAGAGTCTGCAAAAGAAACGAGTGAAG
Found at i:32880674 original size:16 final size:17
Alignment explanation
Indices: 32880653--32880711 Score: 52
Period size: 16 Copynumber: 3.5 Consensus size: 17
32880643 GAGAGTTTGA
32880653 AAAGAAATCGAGTG-AG
1 AAAGAAATCGAGTGAAG
** *
32880669 AAAGAAAAAGAGTCTGCA-
1 AAAGAAATCGAG--TGAAG
32880687 AAAGAAA-CGAGTGAAG
1 AAAGAAATCGAGTGAAG
32880703 AAAGAAATC
1 AAAGAAATC
32880712 AAGTAAAAGC
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
15 3 0.09
16 17 0.50
17 4 0.12
18 9 0.26
19 1 0.03
ACGTcount: A:0.56, C:0.08, G:0.25, T:0.10
Consensus pattern (17 bp):
AAAGAAATCGAGTGAAG
Found at i:32888547 original size:25 final size:25
Alignment explanation
Indices: 32888513--32888600 Score: 86
Period size: 25 Copynumber: 3.5 Consensus size: 25
32888503 TGACCCACAG
* ***
32888513 CTCGCGAGAGCATACTGGTTTACAA
1 CTCGTGAGAGCATACCAATTTACAA
* **
32888538 CTCGTGAGAGCAAACCAATTTATTA
1 CTCGTGAGAGCATACCAATTTACAA
* *
32888563 CTCGTGAGAGCATACCAATTTATAG
1 CTCGTGAGAGCATACCAATTTACAA
*
32888588 CTCGTGTGAGCAT
1 CTCGTGAGAGCAT
32888601 TCATGTAGAA
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 52 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (25 bp):
CTCGTGAGAGCATACCAATTTACAA
Found at i:32889075 original size:21 final size:22
Alignment explanation
Indices: 32889034--32889076 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
32889024 GCATGCATAG
*
32889034 GTATTTTGGCTAATGTGGCCAT
1 GTATTTTGGCTAATATGGCCAT
*
32889056 GTATTTTGGTTAA-ATGGCCAT
1 GTATTTTGGCTAATATGGCCAT
32889077 TTGTTTGGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.21, C:0.12, G:0.26, T:0.42
Consensus pattern (22 bp):
GTATTTTGGCTAATATGGCCAT
Found at i:32896007 original size:23 final size:23
Alignment explanation
Indices: 32895977--32896025 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
32895967 TATGAATTAC
* *
32895977 ATGGAAAT-GTTGTTACATGTTAT
1 ATGGAAATAGATGATACATG-TAT
32896000 ATGGAAATAGATGATACATGTAT
1 ATGGAAATAGATGATACATGTAT
32896023 ATG
1 ATG
32896026 AAACATAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 14 0.61
24 9 0.39
ACGTcount: A:0.37, C:0.04, G:0.22, T:0.37
Consensus pattern (23 bp):
ATGGAAATAGATGATACATGTAT
Found at i:32919358 original size:18 final size:19
Alignment explanation
Indices: 32919331--32919366 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
32919321 TCACATGCCA
*
32919331 AAGTGTAAAA-TGATTTTT
1 AAGTGAAAAAGTGATTTTT
32919349 AAGTGAAAAAGTGATTTT
1 AAGTGAAAAAGTGATTTT
32919367 GGCCATTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.42, C:0.00, G:0.19, T:0.39
Consensus pattern (19 bp):
AAGTGAAAAAGTGATTTTT
Found at i:32921782 original size:9 final size:8
Alignment explanation
Indices: 32921753--32921791 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
32921743 ACCCATATAA
32921753 TATTTTT-
1 TATTTTTC
32921760 TATTTTTC
1 TATTTTTC
*
32921768 TTTTTTTCC
1 TATTTTT-C
32921777 TATTTTTC
1 TATTTTTC
32921785 TATTTTT
1 TATTTTT
32921792 TCACTTTTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
7 7 0.25
8 14 0.50
9 7 0.25
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.79
Consensus pattern (8 bp):
TATTTTTC
Found at i:32921782 original size:17 final size:18
Alignment explanation
Indices: 32921760--32921793 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
32921750 TAATATTTTT
32921760 TATTTTTCT-TTTTTTCC
1 TATTTTTCTATTTTTTCC
32921777 TATTTTTCTATTTTTTC
1 TATTTTTCTATTTTTTC
32921794 ACTTTTTCGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.09, C:0.15, G:0.00, T:0.76
Consensus pattern (18 bp):
TATTTTTCTATTTTTTCC
Done.