Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56598092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1600000 characters in sequence are not A, C, G, or T
File 109 of 185
Found at i:34372523 original size:40 final size:38
Alignment explanation
Indices: 34372448--34372548 Score: 161
Period size: 40 Copynumber: 2.7 Consensus size: 38
34372438 AATTTTTGAG
34372448 GATATGCAATCTTAGATATGATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATATGATATGCAATCCTAGATAT
*
34372486 GATATGCAATCTTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATG--ATATGCAATCCTAGATAT
34372526 GATATGCAATCTTAGA-AT-ATATG
1 GATATGCAATCTTAGATATGATATG
34372549 ATTTTGTAAT
Statistics
Matches: 60, Mismatches: 1, Indels: 6
0.90 0.01 0.09
Matches are distributed among these distances:
36 5 0.08
38 20 0.33
39 2 0.03
40 33 0.55
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATATGCAATCCTAGATAT
Found at i:34372759 original size:19 final size:19
Alignment explanation
Indices: 34372735--34372863 Score: 213
Period size: 19 Copynumber: 6.7 Consensus size: 19
34372725 AATTTTTGAG
34372735 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
34372754 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
34372773 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
34372792 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
34372813 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
34372832 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
34372851 GATATGCAATCTT
1 GATATGCAATCTT
34372864 CGAATATATG
Statistics
Matches: 102, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
19 83 0.81
21 19 0.19
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:34372802 original size:59 final size:57
Alignment explanation
Indices: 34372735--34372863 Score: 213
Period size: 59 Copynumber: 2.2 Consensus size: 57
34372725 AATTTTTGAG
*
34372735 GATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATACAATCTTAGATAT
* *
34372792 GATATATGCAATCTTAGATATGATATGCAATCTTAGATATGATATATAATCTTAGATAT
1 G--ATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATACAATCTTAGATAT
34372851 GATATGCAATCTT
1 GATATGCAATCTT
34372864 CGAATATATG
Statistics
Matches: 67, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
57 13 0.19
59 54 0.81
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (57 bp):
GATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATACAATCTTAGATAT
Found at i:34372815 original size:287 final size:287
Alignment explanation
Indices: 34372292--34372828 Score: 1038
Period size: 287 Copynumber: 1.9 Consensus size: 287
34372282 ACTAATTCCT
* *
34372292 ATACTTCTGAAGATGTTTCATGTTCCAGCAAGACCGAGCAAAATTGGGTATTTTTAAAGTCTTTG
1 ATACTTCTGAAGATGTTTCATGTTCCAGCAAGACCGAGCAAAATTAGGCATTTTTAAAGTCTTTG
*
34372357 CTCCGTTCCTGTTACACGACAACGAGCAAAGAGGGGCAGCTGTAATACCCAATTTTAGCCCGGGC
66 CTCCGTTCCAGTTACACGACAACGAGCAAAGAGGGGCAGCTGTAATACCCAATTTTAGCCCGGGC
34372422 TCACATATGGAAACATAATTTTTGAGGATATGCAATCTTAGATATGATATGCAATCCTAGATATG
131 TCACATATGGAAACATAATTTTTGAGGATATGCAATCTTAGATATGATATGCAATCCTAGATATG
34372487 ATATGCAATCTTAGATATGATATATGCAATCTTAGATATGATATGCAATCTTAGAATATATGATT
196 ATATGCAATCTTAGATATGATATATGCAATCTTAGATATGATATGCAATCTTAGAATATATGATT
34372552 TTGTAATCTTAGAGATTTAATTTGTAG
261 TTGTAATCTTAGAGATTTAATTTGTAG
*
34372579 ATACTTTTGAAGATGTTTCATGTTCCAGCAAGACCGAGCAAAATTAGGCATTTTTAAAGTCTTTG
1 ATACTTCTGAAGATGTTTCATGTTCCAGCAAGACCGAGCAAAATTAGGCATTTTTAAAGTCTTTG
34372644 CTCCGTTCCAGTTACACGACAACGAGCAAAGAGGGGCAGCTGTAATACCCAATTTTAGCCCGGGC
66 CTCCGTTCCAGTTACACGACAACGAGCAAAGAGGGGCAGCTGTAATACCCAATTTTAGCCCGGGC
34372709 TCACATATGGAAACATAATTTTTGAGGATATGCAATCTTAGATATGATATGCAATCCTAGATATG
131 TCACATATGGAAACATAATTTTTGAGGATATGCAATCTTAGATATGATATGCAATCCTAGATATG
34372774 ATATGCAATCTTAGATATGATATATGCAATCTTAGATATGATATGCAATCTTAGA
196 ATATGCAATCTTAGATATGATATATGCAATCTTAGATATGATATGCAATCTTAGA
34372829 TATGATATAT
Statistics
Matches: 246, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
287 246 1.00
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (287 bp):
ATACTTCTGAAGATGTTTCATGTTCCAGCAAGACCGAGCAAAATTAGGCATTTTTAAAGTCTTTG
CTCCGTTCCAGTTACACGACAACGAGCAAAGAGGGGCAGCTGTAATACCCAATTTTAGCCCGGGC
TCACATATGGAAACATAATTTTTGAGGATATGCAATCTTAGATATGATATGCAATCCTAGATATG
ATATGCAATCTTAGATATGATATATGCAATCTTAGATATGATATGCAATCTTAGAATATATGATT
TTGTAATCTTAGAGATTTAATTTGTAG
Found at i:34373646 original size:25 final size:26
Alignment explanation
Indices: 34373613--34373662 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
34373603 TACATGTATA
34373613 TATATTTTTTAAAACGAATATTTTCC
1 TATATTTTTTAAAACGAATATTTTCC
* *
34373639 TATATTTTTT-TAATGAATATTTTC
1 TATATTTTTTAAAACGAATATTTTC
34373663 ATATTTATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 12 0.55
26 10 0.45
ACGTcount: A:0.32, C:0.08, G:0.04, T:0.56
Consensus pattern (26 bp):
TATATTTTTTAAAACGAATATTTTCC
Found at i:34374462 original size:98 final size:98
Alignment explanation
Indices: 34374337--34374531 Score: 318
Period size: 98 Copynumber: 2.0 Consensus size: 98
34374327 AAAAATCATG
* * * *
34374337 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATTGTGCTCTAACGTATTTGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTACCCTAACGTATTGGGTGTGATTTCTT
34374402 AAATCTTAGATAAGTGGATGTTCTTTTAAAGTA
66 AAATCTTAGATAAGTGGATGTTCTTTTAAAGTA
* *
34374435 AAGGAAATATTCCGAGTTTGGGATTCTAAAGGGATCGTACCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTACCCTAACGTATTGGGTGTGATTTCTT
* *
34374500 AAATCTTGGATGAGTGGATGTTCTTTTAAAGT
66 AAATCTTAGATAAGTGGATGTTCTTTTAAAGT
34374532 TTTATTGTAT
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
98 89 1.00
ACGTcount: A:0.29, C:0.10, G:0.24, T:0.37
Consensus pattern (98 bp):
AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTACCCTAACGTATTGGGTGTGATTTCTT
AAATCTTAGATAAGTGGATGTTCTTTTAAAGTA
Found at i:34379406 original size:20 final size:21
Alignment explanation
Indices: 34379366--34379413 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
34379356 TTTTTAATTT
*
34379366 AAATT-TTTTTAAATATATAA
1 AAATTATTTTTAAAAATATAA
*
34379386 AATTTATTTTTAAAAAT-TAA
1 AAATTATTTTTAAAAATATAA
34379406 AAATTATT
1 AAATTATT
34379414 AAAATTATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 14 0.58
21 10 0.42
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
AAATTATTTTTAAAAATATAA
Found at i:34379702 original size:21 final size:21
Alignment explanation
Indices: 34379661--34379704 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
34379651 CCTATTTTAT
*
34379661 ATTTATTATTTTCTCTTTCTC
1 ATTTATTATTTTCTCTCTCTC
*
34379682 ATTTATTGTTTTCTTGCTCTCTC
1 ATTTATTATTTTC-T-CTCTCTC
34379705 CGACGCCTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 12 0.63
22 1 0.05
23 6 0.32
ACGTcount: A:0.11, C:0.20, G:0.05, T:0.64
Consensus pattern (21 bp):
ATTTATTATTTTCTCTCTCTC
Found at i:34380926 original size:14 final size:14
Alignment explanation
Indices: 34380907--34380939 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
34380897 AAAATTAAAA
*
34380907 CACAAATTAAGTTT
1 CACAAATTAAGTCT
34380921 CACAAATTAAGTCT
1 CACAAATTAAGTCT
34380935 CACAA
1 CACAA
34380940 TGCTCAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.45, C:0.21, G:0.06, T:0.27
Consensus pattern (14 bp):
CACAAATTAAGTCT
Found at i:34382325 original size:24 final size:24
Alignment explanation
Indices: 34382298--34382367 Score: 88
Period size: 24 Copynumber: 2.9 Consensus size: 24
34382288 AAAGAAATAA
*
34382298 CAAAGATTTTATACTAATAAATGT
1 CAAATATTTTATACTAATAAATGT
* *
34382322 CAAATATATTATGCTAATAAATGT
1 CAAATATTTTATACTAATAAATGT
*
34382346 TAAATATATTT-TACTAATAAAT
1 CAAATAT-TTTATACTAATAAAT
34382368 ACTAAATCTT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
24 37 0.95
25 2 0.05
ACGTcount: A:0.47, C:0.07, G:0.06, T:0.40
Consensus pattern (24 bp):
CAAATATTTTATACTAATAAATGT
Found at i:34382373 original size:24 final size:23
Alignment explanation
Indices: 34382306--34382374 Score: 75
Period size: 24 Copynumber: 2.9 Consensus size: 23
34382296 AACAAAGATT
*
34382306 TTATACTAATAAATGTCAAATATA
1 TTATACTAATAAATCT-AAATATA
* *
34382330 TTATGCTAATAAATGTTAAATATA
1 TTATACTAATAAAT-CTAAATATA
*
34382354 TTTTACTAATAAATACTAAAT
1 TTATACTAATAAAT-CTAAAT
34382375 CTTCTAGAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
24 37 0.97
25 1 0.03
ACGTcount: A:0.48, C:0.07, G:0.04, T:0.41
Consensus pattern (23 bp):
TTATACTAATAAATCTAAATATA
Found at i:34384686 original size:24 final size:24
Alignment explanation
Indices: 34384653--34384766 Score: 146
Period size: 24 Copynumber: 4.9 Consensus size: 24
34384643 AAAAACATTT
*
34384653 TTATAATAATAAAT-CTTAAATATA
1 TTATACTAATAAATAC-TAAATATA
* *
34384677 TTATGCTAATAAGTACT-AA-ATA
1 TTATACTAATAAATACTAAATATA
* *
34384699 -TATGCTAATAAGTACTAAATATA
1 TTATACTAATAAATACTAAATATA
34384722 TTATACTAATAAATACTAAATATA
1 TTATACTAATAAATACTAAATATA
34384746 TTATACTAATAAATACTAAAT
1 TTATACTAATAAATACTAAAT
34384767 CTTCTAAAAA
Statistics
Matches: 81, Mismatches: 5, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
21 16 0.20
22 5 0.06
23 5 0.06
24 54 0.67
25 1 0.01
ACGTcount: A:0.51, C:0.08, G:0.04, T:0.38
Consensus pattern (24 bp):
TTATACTAATAAATACTAAATATA
Found at i:34384704 original size:21 final size:21
Alignment explanation
Indices: 34384678--34384746 Score: 93
Period size: 21 Copynumber: 3.1 Consensus size: 21
34384668 TTAAATATAT
34384678 TATGCTAATAAGTACTAAATA
1 TATGCTAATAAGTACTAAATA
34384699 TATGCTAATAAGTACTAAATATA
1 TATGCTAATAAGTACT-AA-ATA
* *
34384722 TTATACTAATAAATACTAAATA
1 -TATGCTAATAAGTACTAAATA
34384744 TAT
1 TAT
34384747 TATACTAATA
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
21 19 0.44
22 5 0.12
23 5 0.12
24 14 0.33
ACGTcount: A:0.49, C:0.09, G:0.06, T:0.36
Consensus pattern (21 bp):
TATGCTAATAAGTACTAAATA
Found at i:34384708 original size:45 final size:45
Alignment explanation
Indices: 34384659--34384766 Score: 137
Period size: 45 Copynumber: 2.3 Consensus size: 45
34384649 ATTTTTATAA
* *
34384659 TAATAAAT-CTTAAATATATTATGCTAATAAGTACTAAATATATGC
1 TAATAAATAC-TAAATATATTATACTAATAAATACTAAATATATGC
* *
34384704 TAATAAGTACTAAATATATTATACTAATAAATACTAAATATATTATAC
1 TAATAAATACTAAATATATTATACTAATAAATACT-AA-ATA-TATGC
34384752 TAATAAATACTAAAT
1 TAATAAATACTAAAT
34384767 CTTCTAAAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
45 30 0.56
46 3 0.06
47 3 0.06
48 18 0.33
ACGTcount: A:0.51, C:0.08, G:0.04, T:0.37
Consensus pattern (45 bp):
TAATAAATACTAAATATATTATACTAATAAATACTAAATATATGC
Found at i:34384730 original size:14 final size:14
Alignment explanation
Indices: 34384711--34384754 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
34384701 TGCTAATAAG
34384711 TACTAAATATATTA
1 TACTAAATATATTA
34384725 TACT-AATA-A--A
1 TACTAAATATATTA
34384735 TACTAAATATATTA
1 TACTAAATATATTA
34384749 TACTAA
1 TACTAA
34384755 TAAATACTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
10 5 0.19
11 4 0.15
12 2 0.08
13 4 0.15
14 11 0.42
ACGTcount: A:0.52, C:0.09, G:0.00, T:0.39
Consensus pattern (14 bp):
TACTAAATATATTA
Found at i:34385118 original size:49 final size:49
Alignment explanation
Indices: 34384966--34385118 Score: 191
Period size: 49 Copynumber: 3.1 Consensus size: 49
34384956 ATTGATAAGT
* ** *
34384966 CTGCCTACATCCACGGTGCAGTTATTCTGCAAAATATAGTACAATAAAG
1 CTGCCTACATCCATGGTGTTGTTATTCTGAAAAATATAGTACAATAAAG
* * *
34385015 CTACCTACATCCATGGT-TCTATTATTCTGAAAATTATAGTACAATAAAG
1 CTGCCTACATCCATGGTGT-TGTTATTCTGAAAAATATAGTACAATAAAG
* * * *
34385064 TTGCCTACAACCATGGTGTTGTTATTTTGAAAAATATAGTACAATAAAA
1 CTGCCTACATCCATGGTGTTGTTATTCTGAAAAATATAGTACAATAAAG
34385113 CTGCCT
1 CTGCCT
34385119 TGAAGGTGTG
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
49 86 0.99
50 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.32
Consensus pattern (49 bp):
CTGCCTACATCCATGGTGTTGTTATTCTGAAAAATATAGTACAATAAAG
Found at i:34391557 original size:85 final size:86
Alignment explanation
Indices: 34391377--34391571 Score: 259
Period size: 85 Copynumber: 2.3 Consensus size: 86
34391367 TCAAAACTAT
* * * *
34391377 CCTCATGAGTTTAAGTGATAAGTTGTGTAATCAGTGAAACTCCCTTCGTTAACTTAAGTGATAAG
1 CCTCATGAGCTTAAGTGATAAGTTGAGTAATCAGTGAAACTCCCTTCGTGAACTTAAGTGATAAA
* * *
34391442 CTGTGTAACCAATGAAGCTTC
66 CTATGTAACCAATAAAGCTCC
* *
34391463 CCTCATGAGCTTAAATGATAAGTTGAGTAATTAGT-AAAGCTCCC-TCGTGAACTTAAGTGATAA
1 CCTCATGAGCTTAAGTGATAAGTTGAGTAATCAGTGAAA-CTCCCTTCGTGAACTTAAGTGATAA
* *
34391526 ACTATGTAATCAGTAAAGCTCC
65 ACTATGTAACCAATAAAGCTCC
*
34391548 CCTCGTGAGCTTAAGTGATAAGTT
1 CCTCATGAGCTTAAGTGATAAGTT
34391572 ATGTATCAAC
Statistics
Matches: 95, Mismatches: 13, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
85 59 0.62
86 36 0.38
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.31
Consensus pattern (86 bp):
CCTCATGAGCTTAAGTGATAAGTTGAGTAATCAGTGAAACTCCCTTCGTGAACTTAAGTGATAAA
CTATGTAACCAATAAAGCTCC
Found at i:34391575 original size:43 final size:43
Alignment explanation
Indices: 34391351--34391650 Score: 211
Period size: 43 Copynumber: 7.0 Consensus size: 43
34391341 AAACAGTTTT
* * ** * *
34391351 ATAAGCTGTGTAATCA-TCAAAACTATCCTCATGAGTTTAAGTG
1 ATAAGCTATGTAATCAGT-AAAGCTCCCCTCGTGAGCTTAAGTG
* * * * *
34391394 ATAAGTTGTGTAATCAGTGAAA-CTCCCTTCGTTAACTTAAGTG
1 ATAAGCTATGTAATCAGT-AAAGCTCCCCTCGTGAGCTTAAGTG
* * * * * * *
34391437 ATAAGCTGTGTAACCAATGAAGCTTCCCTCATGAGCTTAAATG
1 ATAAGCTATGTAATCAGTAAAGCTCCCCTCGTGAGCTTAAGTG
* * *
34391480 ATAAGTTGA-GTAATTAGTAAAGCT-CCCTCGTGAACTTAAGTG
1 ATAAGCT-ATGTAATCAGTAAAGCTCCCCTCGTGAGCTTAAGTG
*
34391522 ATAAACTATGTAATCAGTAAAGCTCCCCTCGTGAGCTTAAGTG
1 ATAAGCTATGTAATCAGTAAAGCTCCCCTCGTGAGCTTAAGTG
* ***
34391565 ATAAGTTATGT-ATCAACGAAGCTCCCCAT-GTGAGCTTAAGTG
1 ATAAGCTATGTAATCAGTAAAGCTCCCC-TCGTGAGCTTAAGTG
* * * ** *
34391607 ACAACCTATGT-ATTAGCGAAGCTCCCCAT-GCGAGCTTAAGTG
1 ATAAGCTATGTAATCAGTAAAGCTCCCC-TCGTGAGCTTAAGTG
34391649 AT
1 AT
34391651 TGTGCTCCTC
Statistics
Matches: 207, Mismatches: 44, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
41 1 0.00
42 99 0.48
43 103 0.50
44 4 0.02
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (43 bp):
ATAAGCTATGTAATCAGTAAAGCTCCCCTCGTGAGCTTAAGTG
Found at i:34391587 original size:42 final size:43
Alignment explanation
Indices: 34391377--34391650 Score: 227
Period size: 42 Copynumber: 6.4 Consensus size: 43
34391367 TCAAAACTAT
* * * * *
34391377 CCTCATGAGTTTAAGTGATAAGTTGTGTAATCAGTGAAACTCC
1 CCTCGTGAGCTTAAGTGATAAGCTATGTAATCAGTGAAGCTCC
* * * * * * *
34391420 CTTCGTTAACTTAAGTGATAAGCTGTGTAACCAATGAAGCTTC
1 CCTCGTGAGCTTAAGTGATAAGCTATGTAATCAGTGAAGCTCC
* * * * *
34391463 CCTCATGAGCTTAAATGATAAGTTGA-GTAATTAGTAAAGCT-C
1 CCTCGTGAGCTTAAGTGATAAGCT-ATGTAATCAGTGAAGCTCC
* * *
34391505 CCTCGTGAACTTAAGTGATAAACTATGTAATCAGTAAAGCTCC
1 CCTCGTGAGCTTAAGTGATAAGCTATGTAATCAGTGAAGCTCC
* **
34391548 CCTCGTGAGCTTAAGTGATAAGTTATGT-ATCAACGAAGCTCC
1 CCTCGTGAGCTTAAGTGATAAGCTATGTAATCAGTGAAGCTCC
* * * *
34391590 CCAT-GTGAGCTTAAGTGACAACCTATGT-ATTAGCGAAGCTCC
1 CC-TCGTGAGCTTAAGTGATAAGCTATGTAATCAGTGAAGCTCC
*
34391632 CCAT-GCGAGCTTAAGTGAT
1 CC-TCGTGAGCTTAAGTGAT
34391651 TGTGCTCCTC
Statistics
Matches: 187, Mismatches: 40, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
41 1 0.01
42 97 0.52
43 89 0.48
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (43 bp):
CCTCGTGAGCTTAAGTGATAAGCTATGTAATCAGTGAAGCTCC
Found at i:34391603 original size:85 final size:85
Alignment explanation
Indices: 34391377--34391650 Score: 236
Period size: 85 Copynumber: 3.2 Consensus size: 85
34391367 TCAAAACTAT
* * * ** *
34391377 CCTCATGAGTTTAAGTGATAAGTTGTGTAATCAGTGAAA-CTCCCTTCGTTAACTTAAGTGATAA
1 CCTCGTGAGCTTAAGTGATAAGTTGAGTAATCA-ACAAAGCTCCC-TCGTGAACTTAAGTGATAA
* * * * *
34391441 GCTGTGTAACCAATGAAGCTTC
64 ACTATGTAATCAGTGAAGCTCC
* * * **
34391463 CCTCATGAGCTTAAATGATAAGTTGAGTAATTAGTAAAGCTCCCTCGTGAACTTAAGTGATAAAC
1 CCTCGTGAGCTTAAGTGATAAGTTGAGTAATCAACAAAGCTCCCTCGTGAACTTAAGTGATAAAC
*
34391528 TATGTAATCAGTAAAGCTCC
66 TATGTAATCAGTGAAGCTCC
* * *
34391548 CCTCGTGAGCTTAAGTGATAAGTT-ATGT-ATCAACGAAGCTCCC-CATGTGAGCTTAAGTGACA
1 CCTCGTGAGCTTAAGTGATAAGTTGA-GTAATCAACAAAGCTCCCTC--GTGAACTTAAGTGATA
* * *
34391610 ACCTATGT-ATTAGCGAAGCTCC
63 AACTATGTAATCAGTGAAGCTCC
*
34391632 CCAT-GCGAGCTTAAGTGAT
1 CC-TCGTGAGCTTAAGTGAT
34391651 TGTGCTCCTC
Statistics
Matches: 157, Mismatches: 26, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
83 1 0.01
84 39 0.25
85 83 0.53
86 34 0.22
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (85 bp):
CCTCGTGAGCTTAAGTGATAAGTTGAGTAATCAACAAAGCTCCCTCGTGAACTTAAGTGATAAAC
TATGTAATCAGTGAAGCTCC
Found at i:34394976 original size:24 final size:25
Alignment explanation
Indices: 34394927--34394989 Score: 74
Period size: 24 Copynumber: 2.5 Consensus size: 25
34394917 AGAAAAAACC
*
34394927 ATAAAAAATAAAAATATAGTTCAAAAG
1 ATAAAAAAT--AAATATAGTTCAAAAA
* *
34394954 ATAAAAACTAAATA-AGTTTAAAAA
1 ATAAAAAATAAATATAGTTCAAAAA
34394978 ATAAAAAATAAA
1 ATAAAAAATAAA
34394990 CATAAAAATA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
24 19 0.59
25 5 0.16
27 8 0.25
ACGTcount: A:0.70, C:0.03, G:0.05, T:0.22
Consensus pattern (25 bp):
ATAAAAAATAAATATAGTTCAAAAA
Found at i:34394994 original size:6 final size:6
Alignment explanation
Indices: 34394974--34395008 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
34394964 AATAAGTTTA
*
34394974 AAAAAT AAAAAAT AAACAT AAAAAT AAAAAT AAAA
1 AAAAAT -AAAAAT AAAAAT AAAAAT AAAAAT AAAA
34395009 CAAATAAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
6 20 0.77
7 6 0.23
ACGTcount: A:0.83, C:0.03, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:34403005 original size:15 final size:15
Alignment explanation
Indices: 34402985--34403014 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
34402975 CTCTTTCGAG
34402985 AGTAAGAATAACTGA
1 AGTAAGAATAACTGA
34403000 AGTAAGAATAACTGA
1 AGTAAGAATAACTGA
34403015 CTCTAGGTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.07, G:0.20, T:0.20
Consensus pattern (15 bp):
AGTAAGAATAACTGA
Found at i:34406153 original size:23 final size:23
Alignment explanation
Indices: 34406126--34406290 Score: 145
Period size: 23 Copynumber: 7.2 Consensus size: 23
34406116 GGCAAGTTAC
*
34406126 CTGTGAAGCCTTTGTGGCGCATT
1 CTGTGAAGCCTTTGTGGCGTATT
**
34406149 CTGTGAAGCCTTTGTGATGTATT
1 CTGTGAAGCCTTTGTGGCGTATT
* *
34406172 TTGT-AGAGCATTTGTGGCGTATT
1 CTGTGA-AGCCTTTGTGGCGTATT
* * * *
34406195 CTGTGGAGCATTTATGGCATATT
1 CTGTGAAGCCTTTGTGGCGTATT
* * *
34406218 CTGTGGAGACTTTGTGGCATATT
1 CTGTGAAGCCTTTGTGGCGTATT
*
34406241 CTGT-AGAGCCTTTGTGGCCTATT
1 CTGTGA-AGCCTTTGTGGCGTATT
* * **
34406264 CTATGAAGCCTTTATGGTATATT
1 CTGTGAAGCCTTTGTGGCGTATT
34406287 CTGT
1 CTGT
34406291 AACTCCTAAA
Statistics
Matches: 116, Mismatches: 22, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
22 1 0.01
23 114 0.98
24 1 0.01
ACGTcount: A:0.18, C:0.15, G:0.27, T:0.41
Consensus pattern (23 bp):
CTGTGAAGCCTTTGTGGCGTATT
Found at i:34414674 original size:28 final size:28
Alignment explanation
Indices: 34414642--34414701 Score: 120
Period size: 28 Copynumber: 2.1 Consensus size: 28
34414632 ATCCCCATGC
34414642 CAAAGGTGTACAAAACCATCATTGTTTG
1 CAAAGGTGTACAAAACCATCATTGTTTG
34414670 CAAAGGTGTACAAAACCATCATTGTTTG
1 CAAAGGTGTACAAAACCATCATTGTTTG
34414698 CAAA
1 CAAA
34414702 TGGATTTCCC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (28 bp):
CAAAGGTGTACAAAACCATCATTGTTTG
Found at i:34417045 original size:18 final size:17
Alignment explanation
Indices: 34417024--34417058 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
34417014 TTATTATTAA
*
34417024 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
34417042 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
34417059 TTTAATAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:34417183 original size:17 final size:17
Alignment explanation
Indices: 34417143--34417176 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
34417133 TTATTATTAA
34417143 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
34417160 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
34417177 TCTTAATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:34417382 original size:26 final size:26
Alignment explanation
Indices: 34417352--34417509 Score: 83
Period size: 26 Copynumber: 6.5 Consensus size: 26
34417342 AATACTATAT
34417352 AATATAATTTAAAATAATTATTATTA
1 AATATAATTTAAAATAATTATTATTA
*
34417378 AATATAATTTAATAA-AAATA-TA-T-
1 AATATAATTTAA-AATAATTATTATTA
* ** *
34417401 AATTTAA--TAAAATTCTTAATATTA
1 AATATAATTTAAAATAATTATTATTA
* * *
34417425 AATAT--TCTT-ATATGAATT-TAATAA
1 AATATAAT-TTAAAAT-AATTATTATTA
* * *
34417449 AATCATAA--T-ATATAA-TACTATAA
1 AAT-ATAATTTAAAATAATTATTATTA
34417472 AATATAATTTAAAATAATTATTATTA
1 AATATAATTTAAAATAATTATTATTA
34417498 AATATAATTTAA
1 AATATAATTTAA
34417510 TAAAAATATA
Statistics
Matches: 98, Mismatches: 17, Indels: 34
0.66 0.11 0.23
Matches are distributed among these distances:
20 2 0.02
21 5 0.05
22 7 0.07
23 16 0.16
24 20 0.20
25 12 0.12
26 34 0.35
27 2 0.02
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.43
Consensus pattern (26 bp):
AATATAATTTAAAATAATTATTATTA
Found at i:34417425 original size:18 final size:18
Alignment explanation
Indices: 34417259--34417412 Score: 76
Period size: 18 Copynumber: 8.9 Consensus size: 18
34417249 TAATTATTAA
34417259 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAAAT
*
34417277 ATATAATTTAATAAAATT
1 ATATAATTTAATAAAAAT
* ****
34417295 CT-TAATATTAAATATTCTT
1 ATATAAT-TT-AATAAAAAT
34417314 ATATGAATTTAAT-AAAAT
1 ATAT-AATTTAATAAAAAT
* * * *
34417332 -CATAATAT-ATAATACT
1 ATATAATTTAATAAAAAT
* *
34417348 ATATAATATAATTTAAAAT
1 ATATAATTTAA-TAAAAAT
* *
34417367 A-ATTA-TT-AT--TAA-
1 ATATAATTTAATAAAAAT
34417379 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAAAT
34417397 ATATAATTTAATAAAA
1 ATATAATTTAATAAAA
34417413 TTCTTAATAT
Statistics
Matches: 99, Mismatches: 23, Indels: 28
0.66 0.15 0.19
Matches are distributed among these distances:
12 1 0.01
13 5 0.05
14 2 0.02
15 5 0.05
16 8 0.08
17 16 0.16
18 41 0.41
19 15 0.15
20 3 0.03
21 3 0.03
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.42
Consensus pattern (18 bp):
ATATAATTTAATAAAAAT
Found at i:34417440 original size:120 final size:120
Alignment explanation
Indices: 34417002--34417528 Score: 875
Period size: 120 Copynumber: 4.4 Consensus size: 120
34416992 ATTTAATCAT
* *
34417002 ATTTAAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT-TTAATA
1 ATTTAAA-ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATA
* * * * * * *
34417066 ATCAATATTTTTATCTGAATTTACTAAAATAATAATATATGATACTATAAAATATA
65 TTAAATATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATA
* *
34417122 TTTTAACATAATTATTATTAAATATAATTTAAT-AAAATATATAATTTAATAAAATTCTTAATAT
1 ATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAT
**
34417186 TAAATATTCTTATATGAATTTTCTAAAATCATAATATATAATACTATAAAATATA
66 TAAATATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATA
*
34417241 ATTTAACAT-A--ATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAT
1 ATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAT
*
34417303 TAAATATTCTTATATGAATTTAATAAAATCATAATATATAATACTATATAATATA
66 TAAATATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATA
34417358 ATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAT
1 ATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAT
34417423 TAAATATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATA
66 TAAATATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATA
34417478 ATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAAT
1 ATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAAT
34417529 CTAAAGTTTG
Statistics
Matches: 386, Mismatches: 16, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
116 20 0.05
117 91 0.24
118 25 0.06
119 88 0.23
120 162 0.42
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.44
Consensus pattern (120 bp):
ATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAT
TAAATATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATA
Found at i:34417452 original size:237 final size:237
Alignment explanation
Indices: 34417002--34417528 Score: 860
Period size: 237 Copynumber: 2.2 Consensus size: 237
34416992 ATTTAATCAT
* *
34417002 ATTTAAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTTTAATAA
1 ATTTAAA-ATAA-TATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTTTAATAA
* * * * * * *
34417067 TCAATATTTTTATCTGAATTTACTAAAATAATAATATATGATACTATAAAATATATTTTAACATA
64 TAAATATTCTTATATGAATTTAATAAAATAATAATATATAATACTATAAAATATAATTTAAAATA
34417132 ATTATTATTAAATATAATTTAATAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTT
129 ATTATTATTAAATATAATTTAATAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTT
**
34417197 ATATGAATTTTCTAAAATCATAATATATAATACTATAAAATATA
194 ATATGAATTTAATAAAATCATAATATATAATACTATAAAATATA
* *
34417241 ATTTAACAT-A-ATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
1 ATTTAAAATAATATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATT-TTAATAAT
* *
34417304 AAATATTCTTATATGAATTTAATAAAATCATAATATATAATACTATATAATATAATTTAAAATAA
65 AAATATTCTTATATGAATTTAATAAAATAATAATATATAATACTATAAAATATAATTTAAAATAA
34417369 TTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTT
130 TTATTATTAAATATAATTTAAT-AAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTT
34417434 ATATGAATTTAATAAAATCATAATATATAATACTATAAAATATA
194 ATATGAATTTAATAAAATCATAATATATAATACTATAAAATATA
34417478 ATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAAT
1 ATTTAAAATAA-TATTATTAAATATAATTTAATAAAAATATATAATTTAAT
34417529 CTAAAGTTTG
Statistics
Matches: 267, Mismatches: 16, Indels: 9
0.91 0.05 0.03
Matches are distributed among these distances:
235 42 0.16
236 85 0.32
237 93 0.35
238 3 0.01
239 6 0.02
240 38 0.14
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.44
Consensus pattern (237 bp):
ATTTAAAATAATATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTTTAATAATA
AATATTCTTATATGAATTTAATAAAATAATAATATATAATACTATAAAATATAATTTAAAATAAT
TATTATTAAATATAATTTAATAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTAT
ATGAATTTAATAAAATCATAATATATAATACTATAAAATATA
Found at i:34421993 original size:11 final size:11
Alignment explanation
Indices: 34421955--34422008 Score: 58
Period size: 11 Copynumber: 4.9 Consensus size: 11
34421945 TAAATCCTTT
*
34421955 CTCTC-AATTT
1 CTCTCAAATTC
34421965 CTCTCTAATATT-
1 CTCTC-AA-ATTC
34421977 CTCTCAAATTC
1 CTCTCAAATTC
*
34421988 CTCTCAAGTTC
1 CTCTCAAATTC
34421999 CTCTCAAATT
1 CTCTCAAATT
34422009 TCTATTTAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
10 8 0.21
11 21 0.55
12 6 0.16
13 3 0.08
ACGTcount: A:0.24, C:0.31, G:0.02, T:0.43
Consensus pattern (11 bp):
CTCTCAAATTC
Found at i:34423845 original size:18 final size:18
Alignment explanation
Indices: 34423822--34423864 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
34423812 TGCCAGGTGC
*
34423822 GTATCCTAACCCTTTTAT
1 GTATCCTAACCCTTATAT
34423840 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
34423858 GTTTCCT
1 GTATCCT
34423865 TTTTCTAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.21, C:0.28, G:0.07, T:0.44
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:34424127 original size:21 final size:21
Alignment explanation
Indices: 34424081--34424142 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
34424071 CCAACACTGA
*
34424081 CAACCAG-ATCCCCTACCGGAG
1 CAACCAGAATCCCC-ACCAGAG
* *
34424102 GAACCAGAATCCCCGCCAGAG
1 CAACCAGAATCCCCACCAGAG
* *
34424123 CAACCATAACCCCCACCAGA
1 CAACCAGAATCCCCACCAGA
34424143 AGCTGGACAA
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
21 27 0.82
22 6 0.18
ACGTcount: A:0.34, C:0.44, G:0.16, T:0.06
Consensus pattern (21 bp):
CAACCAGAATCCCCACCAGAG
Found at i:34424314 original size:32 final size:28
Alignment explanation
Indices: 34424267--34424347 Score: 81
Period size: 30 Copynumber: 2.7 Consensus size: 28
34424257 TTATTTGATG
* * *
34424267 TAATAAAATAGAAATTCTTCTATATTATT
1 TAATATAATAGAAATTCTTATACATT-TT
34424296 TCATATACTAATAGAAATTTACTTATACATTTT
1 T-A-ATA-TAATAGAAA-TT-CTTATACATTTT
34424329 TAATATAATAGAAATTCTT
1 TAATATAATAGAAATTCTT
34424348 TTAAATAAGG
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
28 3 0.07
29 3 0.07
30 10 0.23
31 6 0.14
32 9 0.20
33 5 0.11
34 8 0.18
ACGTcount: A:0.43, C:0.09, G:0.04, T:0.44
Consensus pattern (28 bp):
TAATATAATAGAAATTCTTATACATTTT
Found at i:34427750 original size:126 final size:126
Alignment explanation
Indices: 34427525--34428067 Score: 978
Period size: 126 Copynumber: 4.3 Consensus size: 126
34427515 CCAAACATGC
*
34427525 GCTACTGTAGCAAAAGCACGTCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCCT
1 GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCCT
* *
34427590 GCTTAAAGCGTTTTTGACACTATTTTCTCAGAAACGTCTACTCAAAATTATTTTTTCAGGA
66 GCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTCAGGA
34427651 GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCCT
1 GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCCT
* *
34427716 CCTTAAAGCGTTTTTGACACTATTTGCTTAGAAACGTCTACTCGAAATTATTTTTTCAGGA
66 GCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTCAGGA
* *
34427777 GCTACTGTAGCAAAAGCGCGTCCATGTGGGAGCTTCTTTCAGTACTTCTGCTAACAAAGCATCCT
1 GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCCT
*
34427842 GCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTTAGGA
66 GCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTCAGGA
**
34427903 GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAAAACTTCTGCTGACAAAGCATCCT
1 GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCCT
* *
34427968 GCTTAAAGCGTTTTTGACACTATTTTCTCAGAAACGTCTACTCGAAATTATTTTTTTAGGA
66 GCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTCAGGA
34428029 GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTT
1 GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTT
34428068 AAATTAACAA
Statistics
Matches: 402, Mismatches: 15, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
126 402 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (126 bp):
GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCCT
GCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTCAGGA
Found at i:34428321 original size:97 final size:97
Alignment explanation
Indices: 34428085--34428320 Score: 323
Period size: 96 Copynumber: 2.4 Consensus size: 97
34428075 CAAATAATTT
* * * *
34428085 AAGTAACCCTAAACCTTAACTTATTTGAGTTTTTACTTAAAAACTCTAAACTCTAAACCCTAACC
1 AAGTAACCCTAAACCCTAATTTATTTGA-TTTTTACTTAAAAACCCTAAACACTAAACCCTAACC
* *
34428150 TAATTTTATAAAAAAATTATAATTAATTTAGTC
65 TAATTTTATAAAAAAATTATAATTAAATTACTC
* * *
34428183 AAGTAACCCTAAACCCTAATTTATTTGATTTTTCCTTAAAAACCCTTAACACTAAACCCTAATCT
1 AAGTAACCCTAAACCCTAATTTATTTGATTTTTACTTAAAAACCCTAAACACTAAACCCTAACCT
*
34428248 AATTTTTTTAAAAAAA-T-TAATTAAATTACTC
66 AA-TTTTATAAAAAAATTATAATTAAATTACTC
* * *
34428279 AAGTAAACCTAAACCCTAATTTAATTGATTTTTTCTTAAAAA
1 AAGTAACCCTAAACCCTAATTTATTTGATTTTTACTTAAAAA
34428321 ATAATAAACA
Statistics
Matches: 124, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
96 51 0.41
97 35 0.28
98 38 0.31
ACGTcount: A:0.42, C:0.18, G:0.03, T:0.37
Consensus pattern (97 bp):
AAGTAACCCTAAACCCTAATTTATTTGATTTTTACTTAAAAACCCTAAACACTAAACCCTAACCT
AATTTTATAAAAAAATTATAATTAAATTACTC
Found at i:34428342 original size:96 final size:98
Alignment explanation
Indices: 34428085--34428349 Score: 313
Period size: 96 Copynumber: 2.7 Consensus size: 98
34428075 CAAATAATTT
* * * * *
34428085 AAGTAACCCTAAACCTTAACTTATTTGAGTTTTTACTTAAAAACTCTAAACTCTAAACCCTAACC
1 AAGTAACCCTAAACCCTAATTTATTTGA-TTTTTACTTAAAAAATCTAAACACTAAACCCTAATC
* *
34428150 TAA-TTTTATAAAAAAATTATAATTAATTTAGTC
65 TAATTTTTATAAAAAAATTATAATTAAATTACTC
* ** *
34428183 AAGTAACCCTAAACCCTAATTTATTTGATTTTTCCTTAAAAACCCTTAACACTAAACCCTAATCT
1 AAGTAACCCTAAACCCTAATTTATTTGATTTTTACTTAAAAAATCTAAACACTAAACCCTAATCT
*
34428248 AATTTTTTTAAAAAAA-T-TAATTAAATTACTC
66 AATTTTTATAAAAAAATTATAATTAAATTACTC
* * * * * *
34428279 AAGTAAACCTAAACCCTAATTTAATTGATTTTTTCTTAAAAAATAATAAACAC-AAAACTTAATC
1 AAGTAACCCTAAACCCTAATTTATTTGATTTTTACTTAAAAAAT-CTAAACACTAAACCCTAATC
*
34428343 CAATTTT
65 TAATTTT
34428350 GAAAATTTTA
Statistics
Matches: 145, Mismatches: 20, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
96 66 0.46
97 41 0.28
98 38 0.26
ACGTcount: A:0.43, C:0.18, G:0.03, T:0.37
Consensus pattern (98 bp):
AAGTAACCCTAAACCCTAATTTATTTGATTTTTACTTAAAAAATCTAAACACTAAACCCTAATCT
AATTTTTATAAAAAAATTATAATTAAATTACTC
Found at i:34429800 original size:16 final size:16
Alignment explanation
Indices: 34429779--34429809 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
34429769 CGATTAAAAT
*
34429779 TTTTTTGGAATTTCGA
1 TTTTTTGAAATTTCGA
34429795 TTTTTTGAAATTTCG
1 TTTTTTGAAATTTCG
34429810 GTTAACGGCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.06, G:0.16, T:0.58
Consensus pattern (16 bp):
TTTTTTGAAATTTCGA
Found at i:34433371 original size:68 final size:68
Alignment explanation
Indices: 34433291--34433432 Score: 266
Period size: 68 Copynumber: 2.1 Consensus size: 68
34433281 TGACATTGTT
34433291 TATATCTGAAATATTACGATTGAATTGGTGATAAAATGGATTGAAATGTAAACTGTTATACAATT
1 TATATCTGAAATATTACGATTGAATTGGTGATAAAATGGATTGAAATGTAAACTGTTATACAATT
34433356 ACG
66 ACG
**
34433359 TATATCTGAAATATTACGATTGAATTGGTGATAAAATGGATTGAAATGTAAACTGTTATATGATT
1 TATATCTGAAATATTACGATTGAATTGGTGATAAAATGGATTGAAATGTAAACTGTTATACAATT
34433424 ACG
66 ACG
34433427 TATATC
1 TATATC
34433433 AAGCCTGAAT
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 72 1.00
ACGTcount: A:0.39, C:0.07, G:0.18, T:0.37
Consensus pattern (68 bp):
TATATCTGAAATATTACGATTGAATTGGTGATAAAATGGATTGAAATGTAAACTGTTATACAATT
ACG
Found at i:34437061 original size:4 final size:4
Alignment explanation
Indices: 34437052--34437120 Score: 56
Period size: 4 Copynumber: 17.2 Consensus size: 4
34437042 TAAGTAATAA
*
34437052 AAAG AAAG AAAG ATAG AAACG AAACAG AAAG -AAG AAAG AAAG -AA- AAAG
1 AAAG AAAG AAAG AAAG AAA-G -AA-AG AAAG AAAG AAAG AAAG AAAG AAAG
*
34437100 AAA- AAGGG AAAG AAAG AAAG A
1 AAAG AA-AG AAAG AAAG AAAG A
34437121 GAAAGACAAG
Statistics
Matches: 53, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
3 9 0.17
4 35 0.66
5 5 0.09
6 3 0.06
7 1 0.02
ACGTcount: A:0.71, C:0.03, G:0.25, T:0.01
Consensus pattern (4 bp):
AAAG
Found at i:34437091 original size:22 final size:21
Alignment explanation
Indices: 34437050--34437126 Score: 84
Period size: 22 Copynumber: 3.5 Consensus size: 21
34437040 AATAAGTAAT
*
34437050 AAAAAGAAAGAAAGATAGAAACG
1 AAAAAGAAAG-AAGAAAGAAA-G
*
34437073 AAACAGAAAGAAGAAAGAAAG
1 AAAAAGAAAGAAGAAAGAAAG
34437094 AAAAAGAAA-AAGGGAAAGAAAG
1 AAAAAGAAAGAA--GAAAGAAAG
*
34437116 AAAGAGAAAGA
1 AAAAAGAAAGA
34437127 CAAGGCTAGG
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
20 2 0.04
21 9 0.19
22 26 0.55
23 10 0.21
ACGTcount: A:0.71, C:0.03, G:0.25, T:0.01
Consensus pattern (21 bp):
AAAAAGAAAGAAGAAAGAAAG
Found at i:34438065 original size:40 final size:40
Alignment explanation
Indices: 34437944--34438082 Score: 140
Period size: 37 Copynumber: 3.5 Consensus size: 40
34437934 AACTTTGAGT
* * *
34437944 CGATGAGACACTGGGTGTCAATTTATTACTTCAGATTTATT
1 CGATGAGACACTAGGTGTCAATTTACTACTTC-GATTTATC
* * * * *
34437985 CAATGAGGCACTAGGTGCCAATTTACT--TT-GGTTTAAC
1 CGATGAGACACTAGGTGTCAATTTACTACTTCGATTTATC
* *
34438022 CGATGAGACACTAAGTGTCAATTTACTACTTCGAATTATC
1 CGATGAGACACTAGGTGTCAATTTACTACTTCGATTTATC
* *
34438062 CGATGAGGCACTGGGTGTCAA
1 CGATGAGACACTAGGTGTCAA
34438083 ACTGGTGTGT
Statistics
Matches: 77, Mismatches: 18, Indels: 7
0.75 0.18 0.07
Matches are distributed among these distances:
37 28 0.36
39 4 0.05
40 23 0.30
41 22 0.29
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (40 bp):
CGATGAGACACTAGGTGTCAATTTACTACTTCGATTTATC
Found at i:34440626 original size:58 final size:58
Alignment explanation
Indices: 34440564--34440679 Score: 205
Period size: 58 Copynumber: 2.0 Consensus size: 58
34440554 TGCAATTTAA
*
34440564 TACATTGTCACTAGTGATCATTCAATTCAAATTCACATCTCATAAAATTGTTTCAAGG
1 TACATTGTCACTAGTGATCATTCAATTCAAATTCACATATCATAAAATTGTTTCAAGG
* *
34440622 TACATTGTCACTAGTGATCATTCAATTTAAATTCGCATATCATAAAATTGTTTCAAGG
1 TACATTGTCACTAGTGATCATTCAATTCAAATTCACATATCATAAAATTGTTTCAAGG
34440680 AATAGCTTAC
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.37
Consensus pattern (58 bp):
TACATTGTCACTAGTGATCATTCAATTCAAATTCACATATCATAAAATTGTTTCAAGG
Found at i:34444650 original size:48 final size:48
Alignment explanation
Indices: 34444594--34444690 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 48
34444584 CGATTGTCCC
34444594 TTCTGTTCACTGATGATTAATCCCAAGTGTTATTTTCATTTTTAAAAA
1 TTCTGTTCACTGATGATTAATCCCAAGTGTTATTTTCATTTTTAAAAA
*
34444642 TTCTGTTCACTGATGATTGATCCCAAGTGTTATTTTCATTTTTAAAAA
1 TTCTGTTCACTGATGATTAATCCCAAGTGTTATTTTCATTTTTAAAAA
34444690 T
1 T
34444691 CCTCTCGGCA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.28, C:0.14, G:0.11, T:0.46
Consensus pattern (48 bp):
TTCTGTTCACTGATGATTAATCCCAAGTGTTATTTTCATTTTTAAAAA
Found at i:34455016 original size:38 final size:38
Alignment explanation
Indices: 34454930--34455016 Score: 95
Period size: 38 Copynumber: 2.3 Consensus size: 38
34454920 TTATAAAAAA
* ** * *
34454930 AGTCCCTAAAATTTACATGTTTACAATTTTTACAATTT
1 AGTCCCTAAAATCTACAAATTTACAAATTTTACAATTC
**
34454968 AGTCTTTAAAATCTA-AAATTTACACAATTTTACAATTC
1 AGTCCCTAAAATCTACAAATTTACA-AATTTTACAATTC
34455006 AGTCCCTAAAA
1 AGTCCCTAAAA
34455017 AGCAAATTTT
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
37 7 0.18
38 32 0.82
ACGTcount: A:0.39, C:0.17, G:0.05, T:0.39
Consensus pattern (38 bp):
AGTCCCTAAAATCTACAAATTTACAAATTTTACAATTC
Found at i:34460343 original size:7 final size:7
Alignment explanation
Indices: 34460331--34460385 Score: 110
Period size: 7 Copynumber: 7.9 Consensus size: 7
34460321 ATTAAGTAAG
34460331 AAAATTT
1 AAAATTT
34460338 AAAATTT
1 AAAATTT
34460345 AAAATTT
1 AAAATTT
34460352 AAAATTT
1 AAAATTT
34460359 AAAATTT
1 AAAATTT
34460366 AAAATTT
1 AAAATTT
34460373 AAAATTT
1 AAAATTT
34460380 AAAATT
1 AAAATT
34460386 AAACTATTAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 48 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (7 bp):
AAAATTT
Found at i:34465296 original size:28 final size:28
Alignment explanation
Indices: 34465264--34465378 Score: 203
Period size: 28 Copynumber: 4.1 Consensus size: 28
34465254 TAGTACTGTA
*
34465264 TGGGCCTTAGCCCGATACAGTAACAGTG
1 TGGGCCTTAGCCCAATACAGTAACAGTG
* *
34465292 TGGGCCTTAGCCCGATACAGTAACAGTA
1 TGGGCCTTAGCCCAATACAGTAACAGTG
34465320 TGGGCCTTAGCCCAATACAGTAACAGTG
1 TGGGCCTTAGCCCAATACAGTAACAGTG
34465348 TGGGCCTTAGCCCAATACAGTAACAGTG
1 TGGGCCTTAGCCCAATACAGTAACAGTG
34465376 TGG
1 TGG
34465379 TAACACAACC
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 84 1.00
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (28 bp):
TGGGCCTTAGCCCAATACAGTAACAGTG
Found at i:34465501 original size:26 final size:26
Alignment explanation
Indices: 34465472--34465526 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
34465462 AACACACCAA
34465472 TATCGCAGCAAAGCTACCAGTAAAAG
1 TATCGCAGCAAAGCTACCAGTAAAAG
* * *
34465498 TATCGCAGCGAAGCTGCCAGTAACAG
1 TATCGCAGCAAAGCTACCAGTAAAAG
34465524 TAT
1 TAT
34465527 ATGTGGCAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.36, C:0.24, G:0.22, T:0.18
Consensus pattern (26 bp):
TATCGCAGCAAAGCTACCAGTAAAAG
Found at i:34466640 original size:19 final size:18
Alignment explanation
Indices: 34466616--34466662 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 18
34466606 GTTCTCAGTC
34466616 AAAAGGAAAACA-AAATAAT
1 AAAAGGAAAA-ATAAA-AAT
34466635 AAAAGGTAAAAATAAAAAT
1 AAAAGG-AAAAATAAAAAT
34466654 AGAAAGGAA
1 A-AAAGGAA
34466663 GAGAAGAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
19 13 0.52
20 12 0.48
ACGTcount: A:0.72, C:0.02, G:0.15, T:0.11
Consensus pattern (18 bp):
AAAAGGAAAAATAAAAAT
Found at i:34468385 original size:25 final size:25
Alignment explanation
Indices: 34468357--34468484 Score: 84
Period size: 25 Copynumber: 5.1 Consensus size: 25
34468347 AGATCGTAAA
**
34468357 AGCTTACCGATTTGTAGCTCATGA-G
1 AGCTTACCGATTTACAGCTCAT-ATG
*
34468382 AGCTTACCAATTCT-CAGCTCATATG
1 AGCTTACCGATT-TACAGCTCATATG
* * *
34468407 AGCTTATCGA-GTCCAAGCTCATATG
1 AGCTTACCGATTTAC-AGCTCATATG
* * *
34468432 AGCTGACCGATTTACGGCTCGTGA-G
1 AGCTTACCGATTTACAGCTCAT-ATG
* * *
34468457 AGCATACCGATTTATAGCTCGTATG
1 AGCTTACCGATTTACAGCTCATATG
34468482 AGC
1 AGC
34468485 ATAAATGTAC
Statistics
Matches: 81, Mismatches: 15, Indels: 14
0.74 0.14 0.13
Matches are distributed among these distances:
23 1 0.01
24 3 0.04
25 73 0.90
26 4 0.05
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (25 bp):
AGCTTACCGATTTACAGCTCATATG
Found at i:34470293 original size:37 final size:35
Alignment explanation
Indices: 34470241--34470311 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 35
34470231 ATTTCAAAAA
*
34470241 TAATATTATTTTAATAGT-TTAGTATTTAATTTAATG
1 TAATATTATCTTAATAGTATT-GTA-TTAATTTAATG
*
34470277 TAATACTTATCTTAATAGTATTTTATTAATTTAAT
1 TAATA-TTATCTTAATAGTATTGTATTAATTTAAT
34470312 ATTAAAGTGA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 15 0.48
37 14 0.45
38 2 0.06
ACGTcount: A:0.37, C:0.03, G:0.06, T:0.55
Consensus pattern (35 bp):
TAATATTATCTTAATAGTATTGTATTAATTTAATG
Found at i:34470936 original size:21 final size:21
Alignment explanation
Indices: 34470892--34470936 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
34470882 ATTTGAGACA
* * *
34470892 TTTATTTTTCTTCTTCTTTTC
1 TTTATTTTTCTTATTCTGTCC
34470913 TTTATTTTTCTTATTCTGTCC
1 TTTATTTTTCTTATTCTGTCC
34470934 TTT
1 TTT
34470937 TTGGGCCTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.07, C:0.18, G:0.02, T:0.73
Consensus pattern (21 bp):
TTTATTTTTCTTATTCTGTCC
Found at i:34471579 original size:20 final size:20
Alignment explanation
Indices: 34471545--34471582 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
34471535 TTTTTTTAGT
*
34471545 AATTTTAAAGGAAAGTTTAA
1 AATTTTAAAAGAAAGTTTAA
*
34471565 AATTTTAAAATAAAGTTT
1 AATTTTAAAAGAAAGTTT
34471583 TGATTTCTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.11, T:0.39
Consensus pattern (20 bp):
AATTTTAAAAGAAAGTTTAA
Found at i:34471703 original size:146 final size:147
Alignment explanation
Indices: 34471340--34471757 Score: 567
Period size: 146 Copynumber: 2.8 Consensus size: 147
34471330 AGTTTTGATT
*
34471340 TTTTTTAAAAGAGAAAGTTTAGATTTT-AACAAATAAAAAT-T-TTTTTTTTAGTTATTTTAAAG
1 TTTTTTAAAAGAGAAAGTTTAGATTTTGAA-AAATAAAAATATGTTTTTTTTAGTAATTTTAAAG
* * *** * *
34471402 GAAAATTTAAAATTTTAAAACAGTTTTTTTATTTTTTTCAACTATTTCAAAGTAAAAGCTTTAAT
65 GAAAGTTTAAAATTTTAAAATAAAGTTTTGATTTTTTTCAACTATTTCAAAATAAAAGCTTTAAT
* *
34471467 TTTTAAGAAAAATAGTATT
130 CTTTAAGAAAAATAG-ATG
*
34471486 TTTTTTCAAAAAAAGGAGAAAGTTTAGTTTTTGAAAAATAAAAATATGTTTTTTTTAGTAATTTT
1 TTTTTT----AAAA-GAGAAAGTTTAGATTTTGAAAAATAAAAATATGTTTTTTTTAGTAATTTT
*
34471551 AAAGGAAAGTTTAAAATTTTAAAATAAAGTTTTGATTTCTTTTCAACTACTTCAAAATAAAAGCT
61 AAAGGAAAGTTTAAAATTTTAAAATAAAGTTTTGATTT-TTTTCAACTATTTCAAAATAAAAGCT
34471616 TTAATCTTTAAGAAAAATAG-TG
125 TTAATCTTTAAGAAAAATAGATG
* * **
34471638 TTTTTT-AAAGAGAAAATTTAGATTTTGAAAAATAAAAATATGTTTTTTTAAGCCATTTTAAAGG
1 TTTTTTAAAAGAGAAAGTTTAGATTTTGAAAAATAAAAATATGTTTTTTTTAGTAATTTTAAAGG
* *
34471702 AAAGTTTAAAATTTTAAAATAAAGTTTTGATTTTTTTTAACTATTTCGAAATAAAA
66 AAAGTTTAAAATTTTAAAATAAAGTTTTGATTTTTTTCAACTATTTCAAAATAAAA
34471758 TTTTGATTTT
Statistics
Matches: 243, Mismatches: 20, Indels: 19
0.86 0.07 0.07
Matches are distributed among these distances:
145 20 0.08
146 89 0.37
147 3 0.01
150 4 0.02
151 26 0.11
152 10 0.04
153 48 0.20
154 43 0.18
ACGTcount: A:0.42, C:0.04, G:0.10, T:0.44
Consensus pattern (147 bp):
TTTTTTAAAAGAGAAAGTTTAGATTTTGAAAAATAAAAATATGTTTTTTTTAGTAATTTTAAAGG
AAAGTTTAAAATTTTAAAATAAAGTTTTGATTTTTTTCAACTATTTCAAAATAAAAGCTTTAATC
TTTAAGAAAAATAGATG
Found at i:34472782 original size:11 final size:11
Alignment explanation
Indices: 34472766--34472791 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
34472756 TGTAAGATTA
34472766 AAATTAGTTTT
1 AAATTAGTTTT
34472777 AAATTAGTTTT
1 AAATTAGTTTT
34472788 AAAT
1 AAAT
34472792 ATTGTATAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (11 bp):
AAATTAGTTTT
Found at i:34484387 original size:34 final size:34
Alignment explanation
Indices: 34484322--34484398 Score: 88
Period size: 35 Copynumber: 2.2 Consensus size: 34
34484312 CGAAAAAAGA
34484322 AAAAAAAGAAAAAATAGGGAAAGTGAATAAGAAGC
1 AAAAAAAGAAAAAATAGGGAAAGTGAATAAGAA-C
*
34484357 AAAAAAAGAAAGGAAATA-GG-AAG-GAGTAAGAAC
1 AAAAAAAGAAA--AAATAGGGAAAGTGAATAAGAAC
34484390 AAAGAAAAG
1 AAA-AAAAG
34484399 TGATTGAGAG
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
33 4 0.11
34 13 0.34
35 14 0.37
36 2 0.05
37 5 0.13
ACGTcount: A:0.66, C:0.03, G:0.25, T:0.06
Consensus pattern (34 bp):
AAAAAAAGAAAAAATAGGGAAAGTGAATAAGAAC
Found at i:34484958 original size:17 final size:17
Alignment explanation
Indices: 34484933--34484965 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
34484923 AATCAAGAAA
34484933 AAACAAAAAAAATAAAG
1 AAACAAAAAAAATAAAG
*
34484950 AAACCAAAAAAATAAA
1 AAACAAAAAAAATAAA
34484966 AAGAGAGCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.82, C:0.09, G:0.03, T:0.06
Consensus pattern (17 bp):
AAACAAAAAAAATAAAG
Found at i:34485422 original size:42 final size:42
Alignment explanation
Indices: 34485363--34485617 Score: 330
Period size: 42 Copynumber: 6.1 Consensus size: 42
34485353 AAGGAGAACA
* * *
34485363 TTCATTGCATTTAGAGGCCTAGGTGCGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
* ** *
34485405 TTCATTGCATTTAGAGGCCCAAATGTGGAGGTTCATTTACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
* * *
34485447 TTCATTGCATTTAAAGACCCAGCTGTGGAGATCCATTTACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
* * * * *
34485489 TTCATTGTATTTAGAGGCCCAGGTATTGAGGTCCATTCACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
* * * * *
34485531 TTCATTGCATTTAGAGACCTAAGTGTAGAGGTCTATTGACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
34485573 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
34485615 TTC
1 TTC
34485618 TAGTTTACTT
Statistics
Matches: 181, Mismatches: 32, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 181 1.00
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.37
Consensus pattern (42 bp):
TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
Found at i:34485591 original size:126 final size:126
Alignment explanation
Indices: 34485363--34485617 Score: 368
Period size: 126 Copynumber: 2.0 Consensus size: 126
34485353 AAGGAGAACA
* * * *
34485363 TTCATTGCATTTAGAGGCCTAGGTGCGGAGGTCCATTTACTTTTCATTGCATTTAGAGGCCCAAA
1 TTCATTGCATTTAGAGGCCCAGGTACGGAGGTCCATTCACTTTTCATTGCATTTAGAGACCCAAA
* *
34485428 TGTGGAGGTTCATTTACTTTTCATTGCATTTAAAGACCCAGCTGTGGAGATCCATTTACTT
66 TGTAGAGGTTCATTGACTTTTCATTGCATTTAAAGACCCAGCTGTGGAGATCCATTTACTT
* ** * *
34485489 TTCATTGTATTTAGAGGCCCAGGTATTGAGGTCCATTCACTTTTCATTGCATTTAGAGACCTAAG
1 TTCATTGCATTTAGAGGCCCAGGTACGGAGGTCCATTCACTTTTCATTGCATTTAGAGACCCAAA
* * *
34485554 TGTAGAGG-TCTATTGACTTTTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
66 TGTAGAGGTTC-ATTGACTTTTCATTGCATTTAAAGACCCAGCTGTGGAGATCCATTTACTT
34485615 TTC
1 TTC
34485618 TAGTTTACTT
Statistics
Matches: 114, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
125 2 0.02
126 112 0.98
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.37
Consensus pattern (126 bp):
TTCATTGCATTTAGAGGCCCAGGTACGGAGGTCCATTCACTTTTCATTGCATTTAGAGACCCAAA
TGTAGAGGTTCATTGACTTTTCATTGCATTTAAAGACCCAGCTGTGGAGATCCATTTACTT
Found at i:34486649 original size:151 final size:148
Alignment explanation
Indices: 34486388--34486810 Score: 606
Period size: 151 Copynumber: 2.8 Consensus size: 148
34486378 AAAATTTTGA
* *
34486388 TTTTTTTAATAAGAGAAAGTTTAGATTTT-AACAAAT-AAAAATATTTTTTTTAGTTATTTTAAA
1 TTTTTTTAAAAAGAGAAAGTTTAGATTTTGAA-AAATAAAAAATATTTTTTTTAGTAATTTTAAA
*
34486451 GGAAAGTTCAAAATTTTAAAAACAAAATTTTGATTTTTTTTCAACTATTTCAAAGTAAAAGCTTT
65 GGAAAGTTTAAAATTTT-AAAACAAAATTTTGATTTTTTTTCAACTATTTCAAA-TAAAAGCTTT
* *
34486516 AATCTTTAGGAAAAATAGTTTT
128 AATCTTTAAGAAAAATAG-TGT
* *
34486538 TTTTTTTAAAAAGGAGAAAGTTTAGTTTTTGAAAAATAAAAAAT-TTGTTTTTTAGTCATTTTAA
1 TTTTTTTAAAAA-GAGAAAGTTTAGATTTTGAAAAATAAAAAATATT-TTTTTTAGTAATTTTAA
** *
34486602 AGGAAAGTTTAAAATTTTAAAACAATTTTTTTATTTTTTTTCAACTATTTCAAAATAAAAGCTTT
64 AGGAAAGTTTAAAATTTTAAAACAAAATTTTGATTTTTTTTCAACTATTTC-AAATAAAAGCTTT
34486667 AATCTTTAAGAAAAATAGTGT
128 AATCTTTAAGAAAAATAGTGT
*
34486688 TTTTTTT-AAAAGAGAAAGTTTAGATTTTGGAAAAT-AAAAATATGTTTTTTTAAGTAATTTTAA
1 TTTTTTTAAAAAGAGAAAGTTTAGATTTTGAAAAATAAAAAATAT-TTTTTTT-AGTAATTTT-A
34486751 AAGGAAAGTTTAAAATTTTAAAACAAAATTTTGATTTTTTTT-AACTATTTCGAAATAAAA
63 AAGGAAAGTTTAAAATTTTAAAACAAAATTTTGATTTTTTTTCAACTATTTC-AAATAAAA
34486811 TTTTGATTTT
Statistics
Matches: 248, Mismatches: 16, Indels: 19
0.88 0.06 0.07
Matches are distributed among these distances:
147 6 0.02
148 29 0.12
149 30 0.12
150 60 0.24
151 79 0.32
152 44 0.18
ACGTcount: A:0.42, C:0.04, G:0.10, T:0.44
Consensus pattern (148 bp):
TTTTTTTAAAAAGAGAAAGTTTAGATTTTGAAAAATAAAAAATATTTTTTTTAGTAATTTTAAAG
GAAAGTTTAAAATTTTAAAACAAAATTTTGATTTTTTTTCAACTATTTCAAATAAAAGCTTTAAT
CTTTAAGAAAAATAGTGT
Found at i:34486812 original size:32 final size:33
Alignment explanation
Indices: 34486765--34486843 Score: 124
Period size: 32 Copynumber: 2.4 Consensus size: 33
34486755 AAAGTTTAAA
* *
34486765 ATTTTAAAACAAAATTTTGATTTTTTTT-AACT
1 ATTTCAAAATAAAATTTTGATTTTTTTTCAACT
*
34486797 ATTTCGAAATAAAATTTTGATTTTTTTTCAACT
1 ATTTCAAAATAAAATTTTGATTTTTTTTCAACT
34486830 ATTTCAAAATAAAA
1 ATTTCAAAATAAAA
34486844 GCTTTAATCT
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 25 0.60
33 17 0.40
ACGTcount: A:0.41, C:0.08, G:0.04, T:0.48
Consensus pattern (33 bp):
ATTTCAAAATAAAATTTTGATTTTTTTTCAACT
Found at i:34486962 original size:178 final size:179
Alignment explanation
Indices: 34486629--34486998 Score: 654
Period size: 182 Copynumber: 2.1 Consensus size: 179
34486619 TAAAACAATT
*
34486629 TTTTTATTTTTTTTCAACTATTTCAAAATAAAAGCTTTAATCTTTAAGAAAAATAGTGTTTTTTT
1 TTTTGATTTTTTTTCAACTATTTCAAAATAAAAGCTTTAATCTTTAAGAAAAATAG-GTTTTTTT
* *
34486694 TAAAAGAGAAAGTTTAGATTTTGGAAAATAAAAATATGTTTTTTTAAGTAATTTTAAAAGGAAAG
65 TAAAAGAGAAAGTTTAGATTTAGAAAAATAAAAATA-GTTTTTTTAAGTAATTTTAAAAGGAAAG
* *
34486759 TTTAAAATTTTAAAACAAAATTTTGATTTTTTTTAACTATTTCGAAATAAAA
129 TTTAAAATTATAAAACAAAATTTTGA-TTTTTTTAACTATTTCAAAATAAAA
34486811 TTTTGATTTTTTTTCAACTATTTCAAAATAAAAGCTTTAATCTTTAAGAAAAATA-GTTTTTTTT
1 TTTTGATTTTTTTTCAACTATTTCAAAATAAAAGCTTTAATCTTTAAGAAAAATAGGTTTTTTTT
34486875 AAAAGAGAAAGTTTAGATTTAGAAAAATAAAAATA-TTTTTTTAAGTAATTTTAAAAGGAAAGTT
66 AAAAGAGAAAGTTTAGATTTAGAAAAATAAAAATAGTTTTTTTAAGTAATTTTAAAAGGAAAGTT
34486939 TAAAATTATAAAACAAAATTTTGATTTTTTTAACTATTTCAAAATAAAA
131 TAAAATTATAAAACAAAATTTTGATTTTTTTAACTATTTCAAAATAAAA
34486988 TTTTGATTTTT
1 TTTTGATTTTT
34486999 AAGAAAATTA
Statistics
Matches: 183, Mismatches: 5, Indels: 5
0.95 0.03 0.03
Matches are distributed among these distances:
177 35 0.19
178 52 0.28
180 42 0.23
182 54 0.30
ACGTcount: A:0.42, C:0.04, G:0.09, T:0.45
Consensus pattern (179 bp):
TTTTGATTTTTTTTCAACTATTTCAAAATAAAAGCTTTAATCTTTAAGAAAAATAGGTTTTTTTT
AAAAGAGAAAGTTTAGATTTAGAAAAATAAAAATAGTTTTTTTAAGTAATTTTAAAAGGAAAGTT
TAAAATTATAAAACAAAATTTTGATTTTTTTAACTATTTCAAAATAAAA
Found at i:34487573 original size:10 final size:10
Alignment explanation
Indices: 34487558--34487594 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
34487548 CACACTAGTA
34487558 TTATTTTTAT
1 TTATTTTTAT
34487568 TTATTTTTAT
1 TTATTTTTAT
34487578 TTCA-TTTTAT
1 TT-ATTTTTAT
34487588 TTATTTT
1 TTATTTT
34487595 CATGTCTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 1 0.04
10 23 0.92
11 1 0.04
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (10 bp):
TTATTTTTAT
Found at i:34487606 original size:20 final size:20
Alignment explanation
Indices: 34487562--34487614 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
34487552 CTAGTATTAT
* *
34487562 TTTTATTTATTTTTATTTCA
1 TTTTATTTATTTTCATGTCA
34487582 TTTTATTTATTTTCATGTC-
1 TTTTATTTATTTTCATGTCA
*
34487601 TATTTATATATTTT
1 T-TTTATTTATTTT
34487615 TTTACGCATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 1 0.03
20 28 0.97
ACGTcount: A:0.21, C:0.06, G:0.02, T:0.72
Consensus pattern (20 bp):
TTTTATTTATTTTCATGTCA
Found at i:34488171 original size:41 final size:39
Alignment explanation
Indices: 34488126--34488235 Score: 116
Period size: 40 Copynumber: 2.8 Consensus size: 39
34488116 GCGTTTGGAC
* *
34488126 AAAAAACACTCGC-AAAAATTGAGCATTAGCAGCGTTTTTT
1 AAAAAACACTCGCTAAAAA-AGAGCATTAGCAGCG-ATTTT
* * *
34488166 TAAAAACGC-CGCTAAAAAAGGAGCATTAGCGGCGATTTT
1 AAAAAACACTCGCTAAAAAA-GAGCATTAGCAGCGATTTT
*
34488205 AAAAAAAACGTCGCTAAAAAAGAGCATTAGC
1 AAAAAACAC-TCGCTAAAAAAGAGCATTAGC
34488236 GGTGCTTTTA
Statistics
Matches: 58, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
39 13 0.22
40 35 0.60
41 10 0.17
ACGTcount: A:0.44, C:0.17, G:0.18, T:0.21
Consensus pattern (39 bp):
AAAAAACACTCGCTAAAAAAGAGCATTAGCAGCGATTTT
Found at i:34488183 original size:40 final size:40
Alignment explanation
Indices: 34488146--34488264 Score: 125
Period size: 40 Copynumber: 3.0 Consensus size: 40
34488136 CGCAAAAATT
***
34488146 GAGCATTAGCAGCG-TTTTTTTAAAAACGCCGCTAAAAAA
1 GAGCATTAGCAGCGATTTTAAAAAAAACGCCGCTAAAAAA
* *
34488185 GGAGCATTAGCGGCGATTTTAAAAAAAACGTCGCTAAAAAA
1 -GAGCATTAGCAGCGATTTTAAAAAAAACGCCGCTAAAAAA
* * * * *
34488226 GAGCATTAGCGGTGCTTTTAAGAAAAACACCGC-AAAAAA
1 GAGCATTAGCAGCGATTTTAAAAAAAACGCCGCTAAAAAA
34488265 CCAAAGCCCA
Statistics
Matches: 68, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
39 6 0.09
40 41 0.60
41 21 0.31
ACGTcount: A:0.42, C:0.17, G:0.20, T:0.21
Consensus pattern (40 bp):
GAGCATTAGCAGCGATTTTAAAAAAAACGCCGCTAAAAAA
Found at i:34488252 original size:41 final size:41
Alignment explanation
Indices: 34488167--34488264 Score: 137
Period size: 40 Copynumber: 2.4 Consensus size: 41
34488157 GCGTTTTTTT
34488167 AAAAACGCCGCTAAAAAAGGAGCATTAGCGGCGATTTTAAA
1 AAAAACGCCGCTAAAAAAGGAGCATTAGCGGCGATTTTAAA
* * * *
34488208 AAAAACGTCGCTAAAAAA-GAGCATTAGCGGTGCTTTTAAG
1 AAAAACGCCGCTAAAAAAGGAGCATTAGCGGCGATTTTAAA
*
34488248 AAAAACACCGC-AAAAAA
1 AAAAACGCCGCTAAAAAA
34488265 CCAAAGCCCA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
39 6 0.12
40 28 0.55
41 17 0.33
ACGTcount: A:0.47, C:0.17, G:0.19, T:0.16
Consensus pattern (41 bp):
AAAAACGCCGCTAAAAAAGGAGCATTAGCGGCGATTTTAAA
Found at i:34488459 original size:40 final size:40
Alignment explanation
Indices: 34488297--34488618 Score: 261
Period size: 41 Copynumber: 7.9 Consensus size: 40
34488287 TCTTACCTTT
*** * * *
34488297 TGGGTCTTTAGCGGCGATTTCAAAAAAGCGTCGCTAGTGCTC
1 TGGG-CTTTAGCGGCG-TTTTTGAAAAGCGCCGCTAATGCTG
* * * * *
34488339 AGGGCTATAGCGGCATTTTTGAAGAAGTGCCGCTAATGGT-
1 TGGGCTTTAGCGGCGTTTTTGAA-AAGCGCCGCTAATGCTG
* **
34488379 TAGGGCTTTAACGGCGTTTTTAGGGAAGCGCCGCTAATGCTG
1 T-GGGCTTTAGCGGCGTTTTT-GAAAAGCGCCGCTAATGCTG
* * **
34488421 GGGGCTTTAGCAGCGTTTTTGAAAAGCGTTGCTAATGCTG
1 TGGGCTTTAGCGGCGTTTTTGAAAAGCGCCGCTAATGCTG
* *
34488461 TGGGCTTTAGCGGCGTTTTTGGTAAAGCGCCGCTAATGTTG
1 TGGGCTTTAGCGGCGTTTTT-GAAAAGCGCCGCTAATGCTG
* * * ** *
34488502 TGGCCTTTAGCGGCATTTTTGGTAAAGTACCGCTAATGCTT
1 TGGGCTTTAGCGGCGTTTTT-GAAAAGCGCCGCTAATGCTG
* * * *
34488543 TGGCCTTTAGCGGCGTTCTGGATAAGCGCCGCTAATGCTG
1 TGGGCTTTAGCGGCGTTTTTGAAAAGCGCCGCTAATGCTG
* *
34488583 -GGGTCTTTAGTGGCGCTTTTTTAAAAGCGCCGCTAA
1 TGGG-CTTTAGCGGCG-TTTTTGAAAAGCGCCGCTAA
34488619 AAACATTTTA
Statistics
Matches: 222, Mismatches: 51, Indels: 15
0.77 0.18 0.05
Matches are distributed among these distances:
39 2 0.01
40 64 0.29
41 152 0.68
42 4 0.02
ACGTcount: A:0.19, C:0.19, G:0.31, T:0.31
Consensus pattern (40 bp):
TGGGCTTTAGCGGCGTTTTTGAAAAGCGCCGCTAATGCTG
Found at i:34488478 original size:81 final size:81
Alignment explanation
Indices: 34488297--34488618 Score: 274
Period size: 81 Copynumber: 3.9 Consensus size: 81
34488287 TCTTACCTTT
* *** * * * * *
34488297 TGGGTCTTTAGCGGCGATTTCAAAAAAGCGTCGCTAGTGCTCAGGG-CTATAGCGGCATTTTTGA
1 TGGG-CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCT-GGGGCCTTTAGCGGCGTTTTTGA
* *
34488361 AGAAGTGCCGCTAATGGT-
64 A-AAGCGCCGCTAATGCTG
* * * *
34488379 TAGGGCTTTAACGGCGTTTTTAGG-GAAGCGCCGCTAATGCTGGGGGCTTTAGCAGCGTTTTTGA
1 T-GGGCTTTAGCGGCGTTTTT-GGAAAAGCGCCGCTAATGCTGGGGCCTTTAGCGGCGTTTTTGA
**
34488443 AAAGCGTTGCTAATGCTG
64 AAAGCGCCGCTAATGCTG
* * * * *
34488461 TGGGCTTTAGCGGCGTTTTTGGTAAAGCGCCGCTAATGTTGTGGCCTTTAGCGGCATTTTTGGTA
1 TGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTGGGGCCTTTAGCGGCGTTTTT-GAA
** *
34488526 AAGTACCGCTAATGCTT
65 AAGCGCCGCTAATGCTG
* * * * * *
34488543 TGGCCTTTAGCGGCG-TTCTGGATAAGCGCCGCTAATGCTGGGGTCTTTAGTGGCGCTTTTTTAA
1 TGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTGGGGCCTTTAGCGGCG-TTTTTGAA
34488607 AAGCGCCGCTAA
65 AAGCGCCGCTAA
34488619 AAACATTTTA
Statistics
Matches: 191, Mismatches: 42, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
80 2 0.01
81 108 0.57
82 78 0.41
83 3 0.02
ACGTcount: A:0.19, C:0.19, G:0.31, T:0.31
Consensus pattern (81 bp):
TGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTGGGGCCTTTAGCGGCGTTTTTGAAA
AGCGCCGCTAATGCTG
Found at i:34489573 original size:279 final size:269
Alignment explanation
Indices: 34488994--34489655 Score: 748
Period size: 279 Copynumber: 2.4 Consensus size: 269
34488984 GGTTAGGGGC
* * * *
34488994 TAGGGGTTAGACGTTAAGTGTTAAGAGTTAGGGATTTAGAGTTTAGGGATTCAGGGGTCGAGTTA
1 TAGGGGTTAGACGTTAGGGGTTAAGA-ATA-TGATTTA-AGTTTAGGGATTCAGGGGTCGAGTTA
* *
34489059 GGGTTTTGGGTTTAGATTAATTAGTTTTTTAATTTATATTTTAACTATGTTCTTATATAATTATA
63 GGGTTTTAGGTTTAGATTAATTAGTTTTTTAATTTATATTTTAAATATGTTCTTATATAATTATA
34489124 AAAGAGATAATAATAAATTTGTTTAGGGTTTTTGGTTTAGGGTATATGATTAATTTAAGATTTAA
128 AAAGAGATAATAATAAA------TA--G--TTTGGTTTAGGGTATATGATTAATTTAAGATTTAA
** *
34489189 GACCGGTTTAGGAGTTACTATTTTAAAGTTTATGGGGTATGGATTTAAGGATTATGGTTTAAGGG
183 GACCAATTTAGGAGTTACTATTTTAAAGTTTATGGGGTAGGGATTTAAGGATTATGGTTTAAGGG
*
34489254 TTGCGATTTAAAGGTTTGGGGT
248 TTGCGATTTAAAGGTTTAGGGT
* * * *
34489276 TTGGGGTTTGATGTTAGGGGTTAAGAATATGATTTAAGTTTTAGGGATTCAGGGGTTGAGTTAGG
1 TAGGGGTTAGACGTTAGGGGTTAAGAATATGATTTAAG-TTTAGGGATTCAGGGGTCGAGTTAGG
* *
34489341 GTTTTAGGTTTAGATTATTTAG-TTTTTAATTTATATTTTAAATATTTTCTTATATAATTATAAA
65 GTTTTAGGTTTAGATTAATTAGTTTTTTAATTTATATTTTAAATATGTTCTTATATAATTATAAA
* * *
34489405 AGAGATAGTAAT-AA-A-TTT-GTTTAGGGTATATGATTAATTTAATATTTAAGGCCAATTTAGG
130 AGAGATAATAATAAATAGTTTGGTTTAGGGTATATGATTAATTTAAGATTTAAGACCAATTTAGG
* *
34489466 AGTTACTATTTTAAGGTTTATGGAGTATGAATTTAGGGATTAGGGATTAGAGATTATGGTTTAAG
195 AGTTACTATTTTAAAGTTTATGG-G---G----TAGGGATT-----TAAG-GATTATGGTTTAAG
34489531 GGTTG-GAATTT-AAGGTTTAAGGGT
246 GGTTGCG-ATTTAAAGGTTT-AGGGT
* * *
34489555 TAGGGGTTAGACGTTAGGGGTTAAGAATATGATTTAGGGTTTAAGGATTCA-GGGTCAAGTT-GG
1 TAGGGGTTAGACGTTAGGGGTTAAGAATATGATTTA-AGTTTAGGGATTCAGGGGTCGAGTTAGG
*
34489618 GTTTTAGGATTAGATTAATTAGTTTTTTTAATTTATAT
65 GTTTTAGGTTTAGATTAATTAG-TTTTTTAATTTATAT
34489656 GTATTGAATG
Statistics
Matches: 330, Mismatches: 30, Indels: 43
0.82 0.07 0.11
Matches are distributed among these distances:
265 61 0.18
266 4 0.01
269 1 0.00
271 1 0.00
273 7 0.02
277 22 0.07
278 21 0.06
279 138 0.42
280 52 0.16
281 2 0.01
282 21 0.06
ACGTcount: A:0.29, C:0.03, G:0.26, T:0.43
Consensus pattern (269 bp):
TAGGGGTTAGACGTTAGGGGTTAAGAATATGATTTAAGTTTAGGGATTCAGGGGTCGAGTTAGGG
TTTTAGGTTTAGATTAATTAGTTTTTTAATTTATATTTTAAATATGTTCTTATATAATTATAAAA
GAGATAATAATAAATAGTTTGGTTTAGGGTATATGATTAATTTAAGATTTAAGACCAATTTAGGA
GTTACTATTTTAAAGTTTATGGGGTAGGGATTTAAGGATTATGGTTTAAGGGTTGCGATTTAAAG
GTTTAGGGT
Found at i:34489699 original size:18 final size:18
Alignment explanation
Indices: 34489665--34489699 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
34489655 TGTATTGAAT
*
34489665 GGTTAATTTAGGATTTAA
1 GGTTAATTAAGGATTTAA
*
34489683 GGTTAATTAAGGGTTTA
1 GGTTAATTAAGGATTTA
34489700 GTACTTGGGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.26, T:0.43
Consensus pattern (18 bp):
GGTTAATTAAGGATTTAA
Found at i:34490190 original size:83 final size:80
Alignment explanation
Indices: 34489987--34490257 Score: 217
Period size: 83 Copynumber: 3.3 Consensus size: 80
34489977 AATTTAATTT
* * * * *
34489987 GTGGCGTTTTTG-GGAAAACGCCGTAAATATGTATTACAATTTATCAAAACGGCCTCGTTTCACT
1 GTGGCGTTTTTGCGAAAAACGCCG-CAATATGTATTA-AGTTTTTCAAAACGTCC-CGTTTCACT
** *
34490051 AGAGGAGTTT-AATCTGTTA
63 TCAGGAATTTAAAT-T-TTA
* * *
34490070 GTGGCGTTTATGCTAAAAACGCCGCAATGATGTATTAATGTTTTTCAAAATGTCACCGTTTCACT
1 GTGGCGTTTTTGCGAAAAACGCCGCAAT-ATGTATTAA-GTTTTTCAAAACGTC-CCGTTTCACT
*
34490135 TCAGGACTTTAAATTTTA
63 TCAGGAATTTAAATTTTA
* * * *
34490153 GTGGCGTTTTTGCGGAAAACGCCGGAACTATGGATTAAAGTTTCTT-AAAACGGTGCCGTTTCTA
1 GTGGCGTTTTTGCGAAAAACGCCGCAA-TATGTATT-AAGTTT-TTCAAAAC-GTCCCGTTTC-A
* * *
34490217 -TTCAGTAAGTTAATTTTTA
61 CTTCAGGAATTTAAATTTTA
*
34490236 GTGGCGTTTTTGCTAAAAACGC
1 GTGGCGTTTTTGCGAAAAACGC
34490258 TACAAATATA
Statistics
Matches: 154, Mismatches: 24, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
83 97 0.63
84 53 0.34
85 4 0.03
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (80 bp):
GTGGCGTTTTTGCGAAAAACGCCGCAATATGTATTAAGTTTTTCAAAACGTCCCGTTTCACTTCA
GGAATTTAAATTTTA
Found at i:34491554 original size:28 final size:28
Alignment explanation
Indices: 34491521--34491751 Score: 110
Period size: 34 Copynumber: 7.5 Consensus size: 28
34491511 TCAATCATAT
*
34491521 CATAACTTATAT-ATAAACTTACATAATA
1 CATAACTTACATAAT-AACTTACATAATA
34491549 CATAACTTACATAATAACTTACATAACTTA
1 CATAACTTACATAATAACTTACATAA--TA
* * *
34491579 TATAAAAACTTATAT-ATAAACTTGCATAACTTA
1 CAT---AACTTACATAAT-AACTTACATAA--TA
*
34491612 CATAA-TAACATAATAACTTACATAATA
1 CATAACTTACATAATAACTTACATAATA
* * * *
34491639 TATAGCCTACATAAATTGCATAACTCACATAATA
1 CATAACTTACAT--A----ATAACTTACATAATA
*
34491673 CACAACTTACGTAACTTAAATAACTTACATAATA
1 CATAACTTAC---A--T-AATAACTTACATAATA
*
34491707 CATAACTTACATTAAT-ATTATACATAACTTA
1 CATAACTTACA-TAATAACT-TACATAA--TA
34491738 CATAACTTACATAA
1 CATAACTTACATAA
34491752 CTTACAACTT
Statistics
Matches: 160, Mismatches: 20, Indels: 44
0.71 0.09 0.20
Matches are distributed among these distances:
27 5 0.03
28 28 0.17
29 26 0.16
30 14 0.09
31 14 0.09
32 2 0.01
33 24 0.15
34 43 0.27
37 1 0.01
38 2 0.01
39 1 0.01
ACGTcount: A:0.48, C:0.17, G:0.02, T:0.33
Consensus pattern (28 bp):
CATAACTTACATAATAACTTACATAATA
Found at i:34491561 original size:9 final size:9
Alignment explanation
Indices: 34491536--34491771 Score: 125
Period size: 9 Copynumber: 25.7 Consensus size: 9
34491526 CTTATATATA
34491536 AACTTACAT
1 AACTTACAT
34491545 AA--TACAT
1 AACTTACAT
34491552 AACTTACATAAT
1 AACTTAC---AT
34491564 AACTTACAT
1 AACTTACAT
*
34491573 AACTTATAT
1 AACTTACAT
*
34491582 AAAAACTTATATAT
1 ---AAC-T-TACAT
*
34491596 AAACTTGCAT
1 -AACTTACAT
34491606 AACTTACAT
1 AACTTACAT
*
34491615 AA-TAACATAAT
1 AACTTAC---AT
34491626 AACTTACAT
1 AACTTACAT
*
34491635 AA--TATAT
1 AACTTACAT
* *
34491642 AGCCTACAT
1 AACTTACAT
* *
34491651 AAATTGCAT
1 AACTTACAT
*
34491660 AACTCACAT
1 AACTTACAT
*
34491669 AA--TACAC
1 AACTTACAT
*
34491676 AACTTACGT
1 AACTTACAT
*
34491685 AACTTAAAT
1 AACTTACAT
34491694 AACTTACAT
1 AACTTACAT
34491703 AA--TACAT
1 AACTTACAT
34491710 AACTTACATT
1 AACTTACA-T
*
34491720 AATATTATACAT
1 -A-ACT-TACAT
34491732 AACTTACAT
1 AACTTACAT
34491741 AACTTACAT
1 AACTTACAT
34491750 AACTTAC--
1 AACTTACAT
34491757 AACTTACAT
1 AACTTACAT
34491766 AACTTA
1 AACTTA
34491772 ATACATTATA
Statistics
Matches: 176, Mismatches: 25, Indels: 52
0.70 0.10 0.21
Matches are distributed among these distances:
7 31 0.18
8 3 0.02
9 97 0.55
10 6 0.03
11 7 0.04
12 22 0.12
13 5 0.03
14 5 0.03
ACGTcount: A:0.47, C:0.18, G:0.02, T:0.33
Consensus pattern (9 bp):
AACTTACAT
Found at i:34491571 original size:21 final size:21
Alignment explanation
Indices: 34491547--34491636 Score: 80
Period size: 21 Copynumber: 4.3 Consensus size: 21
34491537 ACTTACATAA
34491547 TACATAACTTACATAATAACT
1 TACATAACTTACATAATAACT
* *
34491568 TACATAACTTATATAAAAACTT
1 TACATAACTTACATAATAAC-T
* *
34491590 ATATATAAACTTGC---ATAACT
1 -TACAT-AACTTACATAATAACT
*
34491610 TACATAA-TAACATAATAACT
1 TACATAACTTACATAATAACT
34491630 TACATAA
1 TACATAA
34491637 TATATAGCCT
Statistics
Matches: 54, Mismatches: 9, Indels: 13
0.71 0.12 0.17
Matches are distributed among these distances:
17 2 0.04
18 2 0.04
19 4 0.07
20 14 0.26
21 22 0.41
22 1 0.02
23 4 0.07
24 5 0.09
ACGTcount: A:0.50, C:0.16, G:0.01, T:0.33
Consensus pattern (21 bp):
TACATAACTTACATAATAACT
Found at i:34491619 original size:12 final size:12
Alignment explanation
Indices: 34491550--34491638 Score: 56
Period size: 12 Copynumber: 8.2 Consensus size: 12
34491540 TACATAATAC
34491550 ATAACTTACATA
1 ATAACTTACATA
34491562 ATAACTTAC---
1 ATAACTTACATA
*
34491571 ATAACTTATATA
1 ATAACTTACATA
* *
34491583 AAAACTTATAT-
1 ATAACTTACATA
*
34491594 ATAAACTTGC---
1 AT-AACTTACATA
34491604 ATAACTTACATA
1 ATAACTTACATA
34491616 AT-A---ACATA
1 ATAACTTACATA
34491624 ATAACTTACATA
1 ATAACTTACATA
34491636 ATA
1 ATA
34491639 TATAGCCTAC
Statistics
Matches: 60, Mismatches: 6, Indels: 22
0.68 0.07 0.25
Matches are distributed among these distances:
8 7 0.12
9 15 0.25
10 2 0.03
11 2 0.03
12 34 0.57
ACGTcount: A:0.51, C:0.15, G:0.01, T:0.34
Consensus pattern (12 bp):
ATAACTTACATA
Found at i:34491770 original size:34 final size:33
Alignment explanation
Indices: 34491624--34491771 Score: 127
Period size: 34 Copynumber: 4.2 Consensus size: 33
34491614 TAATAACATA
* * * * *
34491624 ATAACTTACATAATATATAGCCTACATAAATTGC
1 ATAACTTACATAATACATAACTTAC-TAACTTAC
* * *
34491658 ATAACTCACATAATACACAACTTACGTAACTTAA
1 ATAACTTACATAATACATAACTTAC-TAACTTAC
*
34491692 ATAACTTACATAATACATAACTTACATTAATATTATAC
1 ATAACTTACATAATACATAACTTAC--T-A-ACT-TAC
34491730 ATAACTTACATAACTTACATAACTTAC-AACTTAC
1 ATAACTTACATAA--TACATAACTTACTAACTTAC
34491764 ATAACTTA
1 ATAACTTA
34491772 ATACATTATA
Statistics
Matches: 93, Mismatches: 15, Indels: 12
0.77 0.12 0.10
Matches are distributed among these distances:
34 59 0.63
35 3 0.03
36 2 0.02
37 2 0.02
38 15 0.16
40 12 0.13
ACGTcount: A:0.46, C:0.20, G:0.02, T:0.32
Consensus pattern (33 bp):
ATAACTTACATAATACATAACTTACTAACTTAC
Found at i:34492172 original size:19 final size:18
Alignment explanation
Indices: 34492148--34492201 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 18
34492138 TAATGTTTAC
*
34492148 TATATTATTATTTTAATAT
1 TATATTATTA-TTTAATAA
34492167 TATATTA-TATTTAATAA
1 TATATTATTATTTAATAA
*
34492184 TACTTTTATTATTTAATA
1 TA-TATTATTATTTAATA
34492202 CATTAGCAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 9 0.29
18 6 0.19
19 16 0.52
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (18 bp):
TATATTATTATTTAATAA
Found at i:34494076 original size:43 final size:42
Alignment explanation
Indices: 34494027--34494356 Score: 353
Period size: 43 Copynumber: 7.7 Consensus size: 42
34494017 ACGGTATTTT
* * * *
34494027 TAGCGGCGTTTGTAATCAAAGCGTCGCTAAAGGTCTTGAGCTA
1 TAGCGGCGTTTGTGA-GAAAGCGCCGCTAAAGGTCCTGAGCTA
* * * *
34494070 TAGCGGCATTTGTGGAAAAAGCGCCGCTAAAAG-CCATGATCTA
1 TAGCGGCGTTTGT-GAGAAAGCGCCGCTAAAGGTCC-TGAGCTA
* * * *
34494113 TAGCGGCGTCTGTGGGAAAAACGCCGCTAAAGGTCTTGAGCTA
1 TAGCGGCGTTTGTGAG-AAAGCGCCGCTAAAGGTCCTGAGCTA
* * * * *
34494156 TAGCGACGTTT-TGGGAAAAGCGTCGCTAAAGGTCATGATCTA
1 TAGCGGCGTTTGTGAG-AAAGCGCCGCTAAAGGTCCTGAGCTA
34494198 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCCTGAGCTA
1 TAGCGGCGTTTGTGAG-AAAGCGCCGCTAAAGGTCCTGAGCTA
* *
34494241 TAGCGGCGTTTGTGGGAAAAGCGCCACTAAAGGTCCTGAGCTA
1 TAGCGGCGTTTGTGAG-AAAGCGCCGCTAAAGGTCCTGAGCTA
* *
34494284 TAGCGGCGTTTGTGTA-AAGGCGCCGCTAAAGGTCCTGATCTA
1 TAGCGGCGTTTGTG-AGAAAGCGCCGCTAAAGGTCCTGAGCTA
*
34494326 TAGCGGCGTTTGTGTA-AAAGTGCCGCTAAAG
1 TAGCGGCGTTTGTG-AGAAAGCGCCGCTAAAG
34494357 TTAGCGACGC
Statistics
Matches: 247, Mismatches: 34, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
42 91 0.37
43 154 0.62
44 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (42 bp):
TAGCGGCGTTTGTGAGAAAGCGCCGCTAAAGGTCCTGAGCTA
Found at i:34494217 original size:85 final size:86
Alignment explanation
Indices: 34494027--34494356 Score: 432
Period size: 85 Copynumber: 3.9 Consensus size: 86
34494017 ACGGTATTTT
* ** * * * *
34494027 TAGCGGCGTTTGTAATCAAAGCGTCGCTAAAGGTCTTGAGCTATAGCGGCATTTGTGGAAAAAGC
1 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCCTGAGCTATAGCGGCGTTTGTGGGAAAAGC
* *
34494092 GCCGCTAAAAGCCATGATCTA
66 GCCGCTAAAGGTCATGATCTA
* * * * *
34494113 TAGCGGCGTCTGTGGGAAAAACGCCGCTAAAGGTCTTGAGCTATAGCGACGTTT-TGGGAAAAGC
1 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCCTGAGCTATAGCGGCGTTTGTGGGAAAAGC
*
34494177 GTCGCTAAAGGTCATGATCTA
66 GCCGCTAAAGGTCATGATCTA
34494198 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCCTGAGCTATAGCGGCGTTTGTGGGAAAAGC
1 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCCTGAGCTATAGCGGCGTTTGTGGGAAAAGC
* * *
34494263 GCCACTAAAGGTCCTGAGCTA
66 GCCGCTAAAGGTCATGATCTA
* * * * *
34494284 TAGCGGCGTTTGTG-TAAAGGCGCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGT-GTAAAAGT
1 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCCTGAGCTATAGCGGCGTTTGTGGGAAAAGC
34494347 GCCGCTAAAG
66 GCCGCTAAAG
34494357 TTAGCGACGC
Statistics
Matches: 215, Mismatches: 28, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
84 15 0.07
85 114 0.53
86 86 0.40
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (86 bp):
TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCCTGAGCTATAGCGGCGTTTGTGGGAAAAGC
GCCGCTAAAGGTCATGATCTA
Found at i:34494218 original size:128 final size:127
Alignment explanation
Indices: 34494044--34494355 Score: 430
Period size: 128 Copynumber: 2.4 Consensus size: 127
34494034 GTTTGTAATC
* * *
34494044 AAAGCGTCGCTAAAGGTCTTGAGCTATAGCGGCATTTGTGGAAAAAGCGCCGCTAAAAG-CCATG
1 AAAGCGTCGCTAAAGGTCATGATCTATAGCGGCGTTTGTGG-AAAAGCGCCGCTAAAAGTCC-TG
* * *
34494108 ATCTATAGCGGCGTCTGTGGGAAAAACGCCGCTAAAGGTCTTGAGCTATAGCGACGTTT-TGGGA
64 AGCTATAGCGGCGTCTGTGGGAAAAACGCCACTAAAGGTCCTGAGCTATAGCGACGTTTGT-GGA
*
34494172 AAAGCGTCGCTAAAGGTCATGATCTATAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCCTGA
1 AAAGCGTCGCTAAAGGTCATGATCTATAGCGGCGTTTGTG-GAAAAGCGCCGCTAAAAGTCCTGA
* * * *
34494237 GCTATAGCGGCGTTTGTGGGAAAAGCGCCACTAAAGGTCCTGAGCTATAGCGGCGTTTGTGTA
65 GCTATAGCGGCGTCTGTGGGAAAAACGCCACTAAAGGTCCTGAGCTATAGCGACGTTTGTGGA
* * * * *
34494300 AAGGCGCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGTAAAAGTGCCGCTAAA
1 AAAGCGTCGCTAAAGGTCATGATCTATAGCGGCGTTTGTGGAAAAGCGCCGCTAAA
34494356 GTTAGCGACG
Statistics
Matches: 165, Mismatches: 16, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
127 14 0.08
128 147 0.89
129 4 0.02
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (127 bp):
AAAGCGTCGCTAAAGGTCATGATCTATAGCGGCGTTTGTGGAAAAGCGCCGCTAAAAGTCCTGAG
CTATAGCGGCGTCTGTGGGAAAAACGCCACTAAAGGTCCTGAGCTATAGCGACGTTTGTGGA
Found at i:34495902 original size:23 final size:23
Alignment explanation
Indices: 34495876--34495939 Score: 78
Period size: 23 Copynumber: 2.9 Consensus size: 23
34495866 TAGAACTATC
*
34495876 ACCCTCCAAGCACAACCAAATAT
1 ACCCTCCAAACACAACCAAATAT
* * *
34495899 ACCCTTCAAACACAA-CTAGTAT
1 ACCCTCCAAACACAACCAAATAT
34495921 ACCC-CCAAACACAACCAAA
1 ACCCTCCAAACACAACCAAA
34495940 AAGTGGTGAG
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
21 9 0.27
22 11 0.33
23 13 0.39
ACGTcount: A:0.45, C:0.39, G:0.03, T:0.12
Consensus pattern (23 bp):
ACCCTCCAAACACAACCAAATAT
Found at i:34498033 original size:16 final size:16
Alignment explanation
Indices: 34498012--34498044 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
34498002 GAAATAAATA
34498012 ATATATATTATATATT
1 ATATATATTATATATT
*
34498028 ATATATATTTTATATT
1 ATATATATTATATATT
34498044 A
1 A
34498045 GAAATGTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
ATATATATTATATATT
Found at i:34506638 original size:24 final size:24
Alignment explanation
Indices: 34506610--34506662 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
34506600 TTTCTAGAAG
*
34506610 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTTATTAGTATAATAT
* *
34506634 ATTTAGCATTTATTAGTATAGTTT
1 ATTTAGCATTTATTAGTATAATAT
34506658 ATTTA
1 ATTTA
34506663 ACTTACTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.34, C:0.02, G:0.09, T:0.55
Consensus pattern (24 bp):
ATTTAGCATTTATTAGTATAATAT
Found at i:34509484 original size:27 final size:26
Alignment explanation
Indices: 34509433--34509488 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
34509423 ATTTAAAAAT
**
34509433 AAAAATTAGATTTTCTAAATGTTATA
1 AAAAATTAGATTTTCTAAAAATTATA
34509459 AAAAATTAGAATTTT-TAAAAAATTATA
1 AAAAATTAG-ATTTTCT-AAAAATTATA
34509486 AAA
1 AAA
34509489 TTTATTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 10 0.38
27 16 0.62
ACGTcount: A:0.55, C:0.02, G:0.05, T:0.38
Consensus pattern (26 bp):
AAAAATTAGATTTTCTAAAAATTATA
Found at i:34509488 original size:26 final size:25
Alignment explanation
Indices: 34509431--34509488 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 25
34509421 TTATTTAAAA
**
34509431 ATAAAAATTAGATTTTCTAAATGTT
1 ATAAAAATTAGATTTTCTAAAAATT
34509456 ATAAAAAATTAGAATTTT-TAAAAAATT
1 AT-AAAAATTAG-ATTTTCT-AAAAATT
34509483 ATAAAA
1 ATAAAA
34509489 TTTATTAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
25 2 0.07
26 14 0.50
27 12 0.43
ACGTcount: A:0.55, C:0.02, G:0.05, T:0.38
Consensus pattern (25 bp):
ATAAAAATTAGATTTTCTAAAAATT
Found at i:34509506 original size:21 final size:19
Alignment explanation
Indices: 34509458--34509511 Score: 65
Period size: 21 Copynumber: 2.8 Consensus size: 19
34509448 TAAATGTTAT
*
34509458 AAAAAAT-TAGAATTTTTA
1 AAAAAATATAAAATTTTTA
*
34509476 AAAAATTATAAAATTTATTA
1 AAAAAATATAAAATTT-TTA
34509496 AAAATAATATAAAATT
1 AAAA-AATATAAAATT
34509512 ACAAAAATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
18 6 0.20
19 7 0.23
20 7 0.23
21 10 0.33
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (19 bp):
AAAAAATATAAAATTTTTA
Found at i:34509509 original size:29 final size:29
Alignment explanation
Indices: 34509477--34509542 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 29
34509467 GAATTTTTAA
*
34509477 AAAATTATAAAATTTATT-AAAAATAATAT
1 AAAATTATAAAA-ATATTAAAAAATAATAT
* *
34509506 AAAATTACAAAAATATTAAAAAATTATAT
1 AAAATTATAAAAATATTAAAAAATAATAT
34509535 AAAATTAT
1 AAAATTAT
34509543 GGAAAGGAGT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 4 0.12
29 28 0.88
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.35
Consensus pattern (29 bp):
AAAATTATAAAAATATTAAAAAATAATAT
Found at i:34509517 original size:19 final size:19
Alignment explanation
Indices: 34509495--34509531 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
34509485 AAAATTTATT
*
34509495 AAAAATAATATAAAATTAC
1 AAAAATAATAAAAAATTAC
*
34509514 AAAAATATTAAAAAATTA
1 AAAAATAATAAAAAATTA
34509532 TATAAAATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (19 bp):
AAAAATAATAAAAAATTAC
Found at i:34509540 original size:10 final size:10
Alignment explanation
Indices: 34509477--34509542 Score: 50
Period size: 10 Copynumber: 6.8 Consensus size: 10
34509467 GAATTTTTAA
34509477 AAAATTATA-
1 AAAATTATAT
*
34509486 AAATTTAT-T
1 AAAATTATAT
*
34509495 AAAAATAATAT
1 -AAAATTATAT
*
34509506 AAAATTACA-
1 AAAATTATAT
*
34509515 AAAA-TATTAA
1 AAAATTA-TAT
34509525 AAAATTATAT
1 AAAATTATAT
34509535 AAAATTAT
1 AAAATTAT
34509543 GGAAAGGAGT
Statistics
Matches: 44, Mismatches: 7, Indels: 11
0.71 0.11 0.18
Matches are distributed among these distances:
8 2 0.05
9 12 0.27
10 27 0.61
11 3 0.07
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.35
Consensus pattern (10 bp):
AAAATTATAT
Found at i:34515633 original size:6 final size:6
Alignment explanation
Indices: 34515624--34515652 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
34515614 AAATAAAATT
34515624 CTAAAA CTAAAA CTAAAA CTAAAA CTAAA
1 CTAAAA CTAAAA CTAAAA CTAAAA CTAAA
34515653 GTCTAAAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.66, C:0.17, G:0.00, T:0.17
Consensus pattern (6 bp):
CTAAAA
Found at i:34515752 original size:9 final size:9
Alignment explanation
Indices: 34515735--34515801 Score: 98
Period size: 9 Copynumber: 7.4 Consensus size: 9
34515725 GTAGTGATTC
34515735 AATTCGGTT
1 AATTCGGTT
*
34515744 AACTCGGTT
1 AATTCGGTT
*
34515753 AATTCGGGT
1 AATTCGGTT
34515762 AATTCGGTT
1 AATTCGGTT
*
34515771 AATTCGGGT
1 AATTCGGTT
*
34515780 AATTCGATT
1 AATTCGGTT
34515789 AATTCGGTT
1 AATTCGGTT
34515798 AATT
1 AATT
34515802 TTTTAACCAA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 50 1.00
ACGTcount: A:0.25, C:0.12, G:0.22, T:0.40
Consensus pattern (9 bp):
AATTCGGTT
Found at i:34518503 original size:31 final size:31
Alignment explanation
Indices: 34518446--34518504 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 31
34518436 TAGTCTTAAA
** *
34518446 ATATTTACACTATTGGTCCTTCAATTTTTTC
1 ATATTTACACTATTAATCCCTCAATTTTTTC
*
34518477 ATATTTACACT-TTAATCCCTCAAATTTT
1 ATATTTACACTATTAATCCCTCAATTTTT
34518505 GAGTATTTAC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 13 0.54
31 11 0.46
ACGTcount: A:0.27, C:0.20, G:0.03, T:0.49
Consensus pattern (31 bp):
ATATTTACACTATTAATCCCTCAATTTTTTC
Found at i:34518694 original size:23 final size:23
Alignment explanation
Indices: 34518663--34518713 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
34518653 ACCTACTTTC
*
34518663 TTACTGTAGTAATTTTCAGGATA
1 TTACAGTAGTAATTTTCAGGATA
**
34518686 TTACAGTAGTAATTTTTGGGATA
1 TTACAGTAGTAATTTTCAGGATA
34518709 TTACA
1 TTACA
34518714 CATCTTTTGC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.31, C:0.08, G:0.18, T:0.43
Consensus pattern (23 bp):
TTACAGTAGTAATTTTCAGGATA
Found at i:34537107 original size:51 final size:51
Alignment explanation
Indices: 34537031--34537137 Score: 173
Period size: 51 Copynumber: 2.1 Consensus size: 51
34537021 ATGTCTCAGG
*
34537031 CCGTGTAACATTCGAAATGCAACCTTTAAAAAGCTATAGGGGACACACAGT
1 CCGTGTAACATTCGAAATGCAACCTTTAAAAACCTATAGGGGACACACAGT
*
34537082 CCGTGTAAC-TCTCGAAATGCAACCTTTAAAAACCTATAGGGGATACACAGT
1 CCGTGTAACAT-TCGAAATGCAACCTTTAAAAACCTATAGGGGACACACAGT
34537133 -CGTGT
1 CCGTGT
34537138 CGCGTGGTCG
Statistics
Matches: 53, Mismatches: 2, Indels: 3
0.91 0.03 0.05
Matches are distributed among these distances:
50 6 0.11
51 47 0.89
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.23
Consensus pattern (51 bp):
CCGTGTAACATTCGAAATGCAACCTTTAAAAACCTATAGGGGACACACAGT
Found at i:34539782 original size:25 final size:25
Alignment explanation
Indices: 34539754--34539807 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
34539744 CTTATAACTC
**
34539754 ACCTAAATTTTTTATTTATGCTTTT
1 ACCTAAATTTCCTATTTATGCTTTT
*
34539779 ACCTGAATTTCCTATTTATGCTTTT
1 ACCTAAATTTCCTATTTATGCTTTT
34539804 ACCT
1 ACCT
34539808 GAACTTTCAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.22, C:0.19, G:0.06, T:0.54
Consensus pattern (25 bp):
ACCTAAATTTCCTATTTATGCTTTT
Found at i:34539808 original size:25 final size:26
Alignment explanation
Indices: 34539766--34539815 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 26
34539756 CTAAATTTTT
34539766 TATTTATGCTTTTACCTGAA-TTTCC
1 TATTTATGCTTTTACCTGAACTTTCC
34539791 TATTTATGCTTTTACCTGAACTTTC
1 TATTTATGCTTTTACCTGAACTTTC
34539816 ATGGAACATA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 20 0.83
26 4 0.17
ACGTcount: A:0.20, C:0.20, G:0.08, T:0.52
Consensus pattern (26 bp):
TATTTATGCTTTTACCTGAACTTTCC
Found at i:34540020 original size:50 final size:50
Alignment explanation
Indices: 34539896--34540187 Score: 268
Period size: 50 Copynumber: 5.7 Consensus size: 50
34539886 GATAATTACA
* * * **
34539896 TGCCAAAGCCATGTCCCAGACATGGTCTTACATAGGATGTTACTTGTAT---
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CTT-CTCATATCGG
* * * *
34539945 TGCCAATGTCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATATCGG
* ** * *
34539995 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATATCGG
** * *
34540045 TGCCAACCCCATGTCCCAGACATGGTCTTACATGTGACCTT-TCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CTTCTCATATCGG
* * *
34540095 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAGTCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATA---TC---GG
* *
34540151 TGCCAATGCCATCTCCCAAACATGGTCTTACATGGGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
34540188 TCTCTTTACC
Statistics
Matches: 201, Mismatches: 31, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
47 5 0.02
48 3 0.01
49 34 0.17
50 120 0.60
51 2 0.01
53 2 0.01
56 35 0.17
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATATCGG
Found at i:34541563 original size:31 final size:33
Alignment explanation
Indices: 34541525--34541600 Score: 93
Period size: 31 Copynumber: 2.4 Consensus size: 33
34541515 GCCAATCCCT
* * *
34541525 CCAACACACCAATACTCATAAGAG-T-TACCAA
1 CCAACACACCAATACTCACAAGAGCTAAAACAA
* *
34541556 CCAACACATCAATGCTCACAAGAGCTAAAACAA
1 CCAACACACCAATACTCACAAGAGCTAAAACAA
34541589 CCAACACACCAA
1 CCAACACACCAA
34541601 ACAGAGAGTA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
31 21 0.57
32 1 0.03
33 15 0.41
ACGTcount: A:0.47, C:0.34, G:0.07, T:0.12
Consensus pattern (33 bp):
CCAACACACCAATACTCACAAGAGCTAAAACAA
Found at i:34545622 original size:43 final size:43
Alignment explanation
Indices: 34545557--34545687 Score: 122
Period size: 43 Copynumber: 3.0 Consensus size: 43
34545547 AACTCGTAAA
* * **
34545557 ATGCCTACGTCCCAAATGAGGTCTTACATGTAATCAAATATCG
1 ATGCCGACGTCCCAGACAAGGTCTTACATGTAATCAAATATCG
*
34545600 ATGCC-ACTGTCCCAGACAAGGTCTTACATGTAAATCTCAAT-TCG
1 ATGCCGAC-GTCCCAGACAAGGTCTTACATGT-AATC-AAATATCG
** * * * *
34545644 ATGCCGACGTCCCAGACGTGGTGTTACACGAAATCACATATCG
1 ATGCCGACGTCCCAGACAAGGTCTTACATGTAATCAAATATCG
34545687 A
1 A
34545688 AATCCTATGT
Statistics
Matches: 72, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
42 4 0.06
43 33 0.46
44 30 0.42
45 5 0.07
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCGACGTCCCAGACAAGGTCTTACATGTAATCAAATATCG
Found at i:34546964 original size:33 final size:33
Alignment explanation
Indices: 34546903--34546965 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 33
34546893 TACTCTAAAG
* * **
34546903 AAGATGGTTGAAGAGCATCAGGCCACTATGAGC
1 AAGATGGGTGAAGAGAAAAAGGCCACTATGAGC
*
34546936 AAGATGGGTGAAGAGAAAAAGGCTACTATG
1 AAGATGGGTGAAGAGAAAAAGGCCACTATG
34546966 GTGAGCTCGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 25 1.00
ACGTcount: A:0.38, C:0.13, G:0.32, T:0.17
Consensus pattern (33 bp):
AAGATGGGTGAAGAGAAAAAGGCCACTATGAGC
Found at i:34547421 original size:15 final size:16
Alignment explanation
Indices: 34547398--34547428 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
34547388 GTATGGAATG
*
34547398 AAAATTTTTAGTTGAA
1 AAAATTTTAAGTTGAA
34547414 AAAATTTTAAGTTGA
1 AAAATTTTAAGTTGA
34547429 TTTACTAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.13, T:0.42
Consensus pattern (16 bp):
AAAATTTTAAGTTGAA
Found at i:34547938 original size:132 final size:132
Alignment explanation
Indices: 34547689--34547927 Score: 322
Period size: 132 Copynumber: 1.8 Consensus size: 132
34547679 AAATAAATGT
* * *
34547689 TGTTTTGGAGTAGTGAACTTAACTCAACTTACTCAAATAAATGAAGGTTGTGAGTATAACTCATC
1 TGTTTCGGAGTAGCGAACTTAACTCAACTTACTCAAATAAATAAAGGTTGTGAGTATAACTCATC
*** * ** *
34547754 TAACCTTTAAAAACTGGCTAGGAGCGTAGGTTAGCGATTTGTCGGCTAGTAGCATCGGTTTGTGA
66 TAACCTTTAAAAACTCAATAGGAGCGTAGGTCAGCGAACTGTCGGCAAGTAGCATCGGTTTGTGA
34547819 GC
131 GC
*
34547821 TGTTTCGGAGTAGCGAGCTTAACTCAACTTACTCAAATAAATAAAGGTTGTGAGTATAACTCATC
1 TGTTTCGGAGTAGCGAACTTAACTCAACTTACTCAAATAAATAAAGGTTGTGAGTATAACTCATC
*
34547886 TAACC-TT-AAAACATCAATTGAGAGCGTAGGTCCA-CGAACTGT
66 TAACCTTTAAAAAC-TCAATAG-GAGCGTAGGT-CAGCGAACTGT
34547928 TTCAAAGTAG
Statistics
Matches: 93, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
130 5 0.05
131 5 0.05
132 82 0.88
133 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (132 bp):
TGTTTCGGAGTAGCGAACTTAACTCAACTTACTCAAATAAATAAAGGTTGTGAGTATAACTCATC
TAACCTTTAAAAACTCAATAGGAGCGTAGGTCAGCGAACTGTCGGCAAGTAGCATCGGTTTGTGA
GC
Found at i:34548014 original size:104 final size:104
Alignment explanation
Indices: 34547820--34548019 Score: 274
Period size: 104 Copynumber: 1.9 Consensus size: 104
34547810 GGTTTGTGAG
** * * **
34547820 CTGTTTCGGAGTAGCGAGCTTAACTCAACTTACTCAAATAAATAAAGGTTGTGAGTATAACTCAT
1 CTGTTTCAAAGTAGCGAGCTTAACTCAACCTACTCAAATAAATAAAGGGTAAGAGTATAACTCAT
* * *
34547885 CTAACCTTAAAACATCAATTGAGAGCGTAGGTCCACGAA
66 CTAACCTTAAAACATCAACTAAGAGCATAGGTCCACGAA
* * *
34547924 CTGTTTCAAAGTAGCGAGCTTCACTCAACCTACTCACATAAATGAAGGGTAAGAGTATAACTCAT
1 CTGTTTCAAAGTAGCGAGCTTAACTCAACCTACTCAAATAAATAAAGGGTAAGAGTATAACTCAT
* *
34547989 CTAACCTTTAAACATCAGCTAAGAGCATAGG
66 CTAACCTTAAAACATCAACTAAGAGCATAGG
34548020 ATCGCGAGCT
Statistics
Matches: 82, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
104 82 1.00
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.26
Consensus pattern (104 bp):
CTGTTTCAAAGTAGCGAGCTTAACTCAACCTACTCAAATAAATAAAGGGTAAGAGTATAACTCAT
CTAACCTTAAAACATCAACTAAGAGCATAGGTCCACGAA
Found at i:34550264 original size:17 final size:17
Alignment explanation
Indices: 34550242--34550284 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
34550232 AGGTCTCCGA
34550242 CGAGCTTCCAACCAAAT
1 CGAGCTTCCAACCAAAT
34550259 CGAGCTTCCAACCAAAT
1 CGAGCTTCCAACCAAAT
*
34550276 CAAGCTTCC
1 CGAGCTTCC
34550285 GATGATCTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.33, C:0.37, G:0.12, T:0.19
Consensus pattern (17 bp):
CGAGCTTCCAACCAAAT
Found at i:34554710 original size:23 final size:23
Alignment explanation
Indices: 34554666--34554710 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
34554656 AGGTATTCAA
*
34554666 ATACCATTCAAACTTGCATAAAC
1 ATACCATTCAAACATGCATAAAC
*
34554689 ATACCATTCCAACCATGC-TAAA
1 ATACCATT-CAAACATGCATAAA
34554711 TCACCTAACC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.42, C:0.29, G:0.04, T:0.24
Consensus pattern (23 bp):
ATACCATTCAAACATGCATAAAC
Found at i:34563842 original size:251 final size:251
Alignment explanation
Indices: 34563399--34563908 Score: 984
Period size: 251 Copynumber: 2.0 Consensus size: 251
34563389 TGATGCAAGA
34563399 TAGAAAAGTGATAACTTATGTGTCTCGTTAGCTAAAGAGCATTAACGTAATTATCTGATGCACAA
1 TAGAAAAGTGATAACTTATGTGTCTCGTTAGCTAAAGAGCATTAACGTAATTATCTGATGCACAA
*
34563464 TTTAGAGCTAGCTGTTGTAGTTTTTGCTGTAAAGATCTGGAGACACTACCTGTACAACAAAAAGT
66 TTTAGAGCTAGCTGTTGTAGTTTTTGCTATAAAGATCTGGAGACACTACCTGTACAACAAAAAGT
34563529 GTCATATCTATATCGATCATAAGAGTCCCAAATAACTCCCATCTCAAAAGGAGTTGAATTTGAGA
131 GTCATATCTATATCGATCATAAGAGTCCCAAATAACTCCCATCTCAAAAGGAGTTGAATTTGAGA
34563594 CAGCATCGTTGGGTGGAGCTTCTGAAAGATTTTGATTGAATTATTGATTACCACCC
196 CAGCATCGTTGGGTGGAGCTTCTGAAAGATTTTGATTGAATTATTGATTACCACCC
34563650 TAGAAAAGTGATAACTTATGTGTCTCGTTAGCTAAAGAGCATTAACGTAATTATCTGATGCACAA
1 TAGAAAAGTGATAACTTATGTGTCTCGTTAGCTAAAGAGCATTAACGTAATTATCTGATGCACAA
34563715 TTTAGAGCTAGCTGTTGTAGTTTTTGCTATAAAGATCTGGAGACACTACCTGTACAACAAAAAGT
66 TTTAGAGCTAGCTGTTGTAGTTTTTGCTATAAAGATCTGGAGACACTACCTGTACAACAAAAAGT
*
34563780 GTCATATCTATATCGATCATAAGAGTCTCAAATAACTCCCATCTCAAAAGGAGTTGAATTTGAGA
131 GTCATATCTATATCGATCATAAGAGTCCCAAATAACTCCCATCTCAAAAGGAGTTGAATTTGAGA
*
34563845 CAGCATCGTTGGGTGGAGCTTTTGAAAGATTTTGATTGAATTATTGATTACCACCC
196 CAGCATCGTTGGGTGGAGCTTCTGAAAGATTTTGATTGAATTATTGATTACCACCC
*
34563901 TAGTAAAG
1 TAGAAAAG
34563909 CTAACGTTGT
Statistics
Matches: 255, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
251 255 1.00
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.31
Consensus pattern (251 bp):
TAGAAAAGTGATAACTTATGTGTCTCGTTAGCTAAAGAGCATTAACGTAATTATCTGATGCACAA
TTTAGAGCTAGCTGTTGTAGTTTTTGCTATAAAGATCTGGAGACACTACCTGTACAACAAAAAGT
GTCATATCTATATCGATCATAAGAGTCCCAAATAACTCCCATCTCAAAAGGAGTTGAATTTGAGA
CAGCATCGTTGGGTGGAGCTTCTGAAAGATTTTGATTGAATTATTGATTACCACCC
Found at i:34571101 original size:364 final size:365
Alignment explanation
Indices: 34570417--34571122 Score: 1146
Period size: 364 Copynumber: 1.9 Consensus size: 365
34570407 TGGGAACCTC
* **
34570417 CAGCCCAAATGACCTAATAGGATCCGGATCTTCGACCCAGATCTGACACAGAAAAAGAATGCTCA
1 CAGCCCAAATGACCGAATAGGATCCAAATCTTCGACCCAGATCTGACACAGAAAAAGAATGCTCA
* *
34570482 CCTACAGTCATAATTCGTTGGGGACCCCGCTGGAATGCCAAATGTTCGCAAAGATAGCTCACACA
66 CCTACAGGCATAATTCGTTGGGGACCCCGCTGGAATGCCAAATGTCCGCAAAGATAGCTCACACA
* * * *
34570547 GAAAGCTTGTAAGGAGAGCTCGTGTAAGCCTCATAGGAATGAGGTTCCAAGTTATGTTCGCAGAA
131 AAAAGCTTGTAAAGAAAGCTCGTGTAAGCCTCATAGGAATGAGGTTCCAAGTTATGTCCGCAGAA
*
34570612 GGGATCACGAGCACTACAAGGGATCCCCACTCGTGACTAGCAAGCATTAAGCTCGCTGGAGGAGT
196 GGGATCACGAGCACTACAAGGGATCCCCACTCGTGACTAGCAAGCATGAAGCTCGCTGGAGGAGT
** * * *
34570677 CAATCCCTAGATCAGAAAGGGTCGTGTGCTCCGTAGACACGCATCCAATAAGCCAAGGGATGCTT
261 CAATCCCTAGATCAGAAAGGACCGCGTCCTCCGTAGACACACATCCAATAAGCCAAGGGATGCTT
34570742 AGGGAATGTCAGCACCAGGGACAAGGAATGTCAGTACCAT
326 AGGGAATGTCAGCACCAGGGACAAGGAATGTCAGTACCAT
* * * *
34570782 CAGCCCCAA-GACCGAATAGGATCCAAATCTTCGACCCGGATCTGACTCGGAAAAAGAATGCTCA
1 CAGCCCAAATGACCGAATAGGATCCAAATCTTCGACCCAGATCTGACACAGAAAAAGAATGCTCA
*
34570846 CCTACAGGCA-AAGTTCGTTGGGGACCCCGCTGGAATGCCAAATGTCCGCAAAGATAGCTCGCAC
66 CCTACAGGCATAA-TTCGTTGGGGACCCCGCTGGAATGCCAAATGTCCGCAAAGATAGCTCACAC
* * *
34570910 AAAAATCTTGTAAAGAAAGCTCGTGTAAGCCTCGTAGGAATGAGGTTGCAAGTTATGTCCGCAGA
130 AAAAAGCTTGTAAAGAAAGCTCGTGTAAGCCTCATAGGAATGAGGTTCCAAGTTATGTCCGCAGA
34570975 AGGGATCACGAGCACTACAAGGGATCCCCACTCGTGACTAGCAAGCATGAAGCTCGCTGGAGGAG
195 AGGGATCACGAGCACTACAAGGGATCCCCACTCGTGACTAGCAAGCATGAAGCTCGCTGGAGGAG
* * *
34571040 TCAATCCTTGGATTAGAAAGGACCGCGTCCTCCGTAGACACACATCCAATAAGCCAAGGGATGCT
260 TCAATCCCTAGATCAGAAAGGACCGCGTCCTCCGTAGACACACATCCAATAAGCCAAGGGATGCT
*
34571105 TAGGGAATGTCAGTACCA
325 TAGGGAATGTCAGCACCA
34571123 TCAGCCCCAA
Statistics
Matches: 313, Mismatches: 27, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
363 2 0.01
364 303 0.97
365 8 0.03
ACGTcount: A:0.31, C:0.25, G:0.25, T:0.19
Consensus pattern (365 bp):
CAGCCCAAATGACCGAATAGGATCCAAATCTTCGACCCAGATCTGACACAGAAAAAGAATGCTCA
CCTACAGGCATAATTCGTTGGGGACCCCGCTGGAATGCCAAATGTCCGCAAAGATAGCTCACACA
AAAAGCTTGTAAAGAAAGCTCGTGTAAGCCTCATAGGAATGAGGTTCCAAGTTATGTCCGCAGAA
GGGATCACGAGCACTACAAGGGATCCCCACTCGTGACTAGCAAGCATGAAGCTCGCTGGAGGAGT
CAATCCCTAGATCAGAAAGGACCGCGTCCTCCGTAGACACACATCCAATAAGCCAAGGGATGCTT
AGGGAATGTCAGCACCAGGGACAAGGAATGTCAGTACCAT
Found at i:34577089 original size:69 final size:69
Alignment explanation
Indices: 34577004--34577434 Score: 296
Period size: 69 Copynumber: 6.3 Consensus size: 69
34576994 GCAAAGTTGG
* * * * * *
34577004 GACCTCCAAAATAGTTAGTGAGACCAAAGCTCCCAGCTATAAAATTAAGGTTCGCAAGCGAAGAG
1 GACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCCAGCTATAAAATCAAGGCTCGCAGGCGAAGAG
34577069 CCGT
66 CCGT
* * * * *
34577073 GACCTCCAAAACAGTTAGCGAGAGCAAAGCTCGCAGCTGTAAAATCAGGGCTCGCGGGCAAAGAG
1 GACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCCAGCTATAAAATCAAGGCTCGCAGGCGAAGAG
*
34577138 TC-T
66 CCGT
* * * * * * *
34577141 CGACCTCCAAAATAGTTAGCAAAAGCAAAGCTCCTAGCTGTAAAATCAAGGCTCACAGGTGAAGA
1 -GACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCCAGCTATAAAATCAAGGCTCGCAGGCGAAGA
* *
34577206 GCTGC
65 GCCGT
* * * * * *
34577211 AACCTCGAAAACAATTAGCGAGAGCAAAGCTCCCAGCTATAAAACCAAGGTTCGCAGGTGAA-AG
1 GACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCCAGCTATAAAATCAAGGCTCGCAGGCGAAGAG
*
34577275 TCGT
66 CCGT
* * * * * * * * ** *
34577279 GAACTCCAAAGCAATTAGC-AGGAGCAAAACTCTCAACT-TCAAAATCAGGGCTCACAAACAAAG
1 GACCTCCAAAACAGTTAGCGA-GAGCAAAGCTCCCAGCTAT-AAAATCAAGGCTCGCAGGCGAAG
* *
34577342 GGTCG-
64 AGCCGT
* * * * * * * * * * *
34577347 CAGCTTCCAAAACAATTAGCAAGAGCAAAACTCCTAGCTGTAAAATCAAAGCTCGTAGGCAAAAA
1 GA-CCTCCAAAACAGTTAGCGAGAGCAAAGCTCCCAGCTATAAAATCAAGGCTCGCAGGCGAAGA
34577412 GCCGT
65 GCCGT
* * *
34577417 AACCTCTAAAATAGTTAG
1 GACCTCCAAAACAGTTAG
34577435 TGATGTAAAA
Statistics
Matches: 277, Mismatches: 76, Indels: 18
0.75 0.20 0.05
Matches are distributed among these distances:
67 2 0.01
68 48 0.17
69 224 0.81
70 3 0.01
ACGTcount: A:0.38, C:0.24, G:0.21, T:0.17
Consensus pattern (69 bp):
GACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCCAGCTATAAAATCAAGGCTCGCAGGCGAAGAG
CCGT
Found at i:34577254 original size:138 final size:138
Alignment explanation
Indices: 34577004--34577254 Score: 340
Period size: 138 Copynumber: 1.8 Consensus size: 138
34576994 GCAAAGTTGG
** * * * *
34577004 GACCTCCAAAATAGTTAGTGAGACCAAAGCTCCCAGCTATAAAATTAAGGTTCGCAAGCGAAGAG
1 GACCTCCAAAATAGTTAGCAAAACCAAAGCTCCCAGCTATAAAATCAAGGCTCACAAGCGAAGAG
** * * *
34577069 CCGTGACCTCCAAAACAGTTAGCGAGAGCAAAGCTCGCAGCTGTAAAATCAGGGCTCGCGGGCAA
66 CCGCAACCTCCAAAACAATTAGCGAGAGCAAAGCTCCCAGCTATAAAATCAGGGCTCGCGGGCAA
34577134 AGAGTCTC
131 AGAGTCTC
* * * * *
34577142 GACCTCCAAAATAGTTAGCAAAAGCAAAGCTCCTAGCTGTAAAATCAAGGCTCACAGGTGAAGAG
1 GACCTCCAAAATAGTTAGCAAAACCAAAGCTCCCAGCTATAAAATCAAGGCTCACAAGCGAAGAG
* *
34577207 CTGCAACCTCGAAAACAATTAGCGAGAGCAAAGCTCCCAGCTATAAAA
66 CCGCAACCTCCAAAACAATTAGCGAGAGCAAAGCTCCCAGCTATAAAA
34577255 CCAAGGTTCG
Statistics
Matches: 95, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
138 95 1.00
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.16
Consensus pattern (138 bp):
GACCTCCAAAATAGTTAGCAAAACCAAAGCTCCCAGCTATAAAATCAAGGCTCACAAGCGAAGAG
CCGCAACCTCCAAAACAATTAGCGAGAGCAAAGCTCCCAGCTATAAAATCAGGGCTCGCGGGCAA
AGAGTCTC
Found at i:34577383 original size:206 final size:207
Alignment explanation
Indices: 34577018--34577400 Score: 486
Period size: 206 Copynumber: 1.9 Consensus size: 207
34577008 TCCAAAATAG
* ** *
34577018 TTAGTGAGACCAAAGCTCCCAGCTATAAAATTAAGGTTCGCAAGCGAAGAGCCGTGACCTCCAAA
1 TTAGCGAGACCAAAGCTCCCAGCTATAAAACCAAGGTTCGCAAGCGAAGAGCCGTGAACTCCAAA
* * * * *** *
34577083 ACAGTTAGCGAGAGCAAAGCTCGCAGCTGTAAAATCAGGGCTCGCGGGCAAAGAGTCTCGACCTC
66 ACAATTAGCGAGAGCAAAACTCGCAACTGTAAAATCAGGGCTCACAAACAAAGAGTCGCGACCTC
* * * *
34577148 CAAAATAGTTAGCAAAAGCAAAGCTCCTAGCTGTAAAATCAAGGCTCACAGGTGAAGAGCTGCAA
131 CAAAACAATTAGCAAAAGCAAAACTCCTAGCTGTAAAATCAAAGCTCACAGGTGAAGAGCTGCAA
34577213 CCTCGAAAACAA
196 CCTCGAAAACAA
* * * *
34577225 TTAGCGAGAGCAAAGCTCCCAGCTATAAAACCAAGGTTCGCAGGTGAA-AGTCGTGAACTCCAAA
1 TTAGCGAGACCAAAGCTCCCAGCTATAAAACCAAGGTTCGCAAGCGAAGAGCCGTGAACTCCAAA
* * *
34577289 GCAATTAGC-AGGAGCAAAACTCTCAACT-TCAAAATCAGGGCTCACAAACAAAGGGTCGC-AGC
66 ACAATTAGCGA-GAGCAAAACTCGCAACTGT-AAAATCAGGGCTCACAAACAAAGAGTCGCGA-C
* *
34577351 TTCCAAAACAATTAGCAAGAGCAAAACTCCTAGCTGTAAAATCAAAGCTC
128 CTCCAAAACAATTAGCAAAAGCAAAACTCCTAGCTGTAAAATCAAAGCTC
34577401 GTAGGCAAAA
Statistics
Matches: 148, Mismatches: 25, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
205 3 0.02
206 103 0.70
207 42 0.28
ACGTcount: A:0.38, C:0.24, G:0.21, T:0.17
Consensus pattern (207 bp):
TTAGCGAGACCAAAGCTCCCAGCTATAAAACCAAGGTTCGCAAGCGAAGAGCCGTGAACTCCAAA
ACAATTAGCGAGAGCAAAACTCGCAACTGTAAAATCAGGGCTCACAAACAAAGAGTCGCGACCTC
CAAAACAATTAGCAAAAGCAAAACTCCTAGCTGTAAAATCAAAGCTCACAGGTGAAGAGCTGCAA
CCTCGAAAACAA
Found at i:34577443 original size:53 final size:53
Alignment explanation
Indices: 34577385--34577490 Score: 158
Period size: 53 Copynumber: 2.0 Consensus size: 53
34577375 AACTCCTAGC
* *
34577385 TGTAAAATCAAAGCTCGTAGGCAAAAAGCCGTAACCTCTAAAATAGTTAGTGA
1 TGTAAAATCAAAGCTCGTAGGCAAAAAGCCGCAACCTCCAAAATAGTTAGTGA
* * * *
34577438 TGTAAAATCAAGGCTCGTAGGCAAAGAGTCGCGACCTCCAAAATAGTTAGTGA
1 TGTAAAATCAAAGCTCGTAGGCAAAAAGCCGCAACCTCCAAAATAGTTAGTGA
34577491 GACCAAAGCT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
53 47 1.00
ACGTcount: A:0.39, C:0.18, G:0.22, T:0.22
Consensus pattern (53 bp):
TGTAAAATCAAAGCTCGTAGGCAAAAAGCCGCAACCTCCAAAATAGTTAGTGA
Found at i:34577534 original size:69 final size:69
Alignment explanation
Indices: 34577439--34577575 Score: 168
Period size: 69 Copynumber: 2.0 Consensus size: 69
34577429 AGTTAGTGAT
* * * ** *
34577439 GTAAAATCAAGGCTCGTAGGCAAAGAG-TCGCGACCTCCAAAATAGTTAGTGAGACCAAAGCTCC
1 GTAAAATAAAAGCTCGCAGGCAAAGAGCT-GCGACCTCCAAAATAGTTAGCAAGACAAAAGCTCC
34577503 CAACA
65 CAACA
* ** *
34577508 GTAAAATAAAAGCTCGCAGGCGAAGAGCTGCGACCTTTAAAATAGTTAGCAAGAGAAAAGCTCCC
1 GTAAAATAAAAGCTCGCAGGCAAAGAGCTGCGACCTCCAAAATAGTTAGCAAGACAAAAGCTCCC
34577573 AAC
66 AAC
34577576 TTTACAATCA
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
69 56 0.98
70 1 0.02
ACGTcount: A:0.39, C:0.23, G:0.22, T:0.16
Consensus pattern (69 bp):
GTAAAATAAAAGCTCGCAGGCAAAGAGCTGCGACCTCCAAAATAGTTAGCAAGACAAAAGCTCCC
AACA
Found at i:34580278 original size:403 final size:403
Alignment explanation
Indices: 34579531--34580337 Score: 1411
Period size: 403 Copynumber: 2.0 Consensus size: 403
34579521 GACGGAACGA
*
34579531 CATCCCACAATAATAGTAGAAAAAATTCGCAGGCTCCTCCAAACACCCCATCAATATCATGCCCA
1 CATCCCACAATAATAGTAGAAAAAATTCACAGGCTCCTCCAAACACCCCATCAATATCATGCCCA
34579596 ACTGATCGAGGGAATCGTGATGCCAAGTACTCATCGTTAGTTGCCCACCAACTGATCATGCGACC
66 ACTGATCGAGGGAATCGTGATGCCAAGTACTCATCGTTAGTTGCCCACCAACTGATCATGCGACC
* *
34579661 TCTTAGTTGTCGCCAGCCCTCTAACTATTTAGGCTAAGATCCTCCAAGCAAAATCTAAAGACATT
131 TCTTAGTTGTCGCCAGCCCTCCAACCATTTAGGCTAAGATCCTCCAAGCAAAATCTAAAGACATT
*
34579726 CATCACAGTTAGAATCGTCTTCAGAGCCTTTGAAGTTACTCGATAGCCTCATCAGTGGCAAGACT
196 CATCACAATTAGAATCGTCTTCAGAGCCTTTGAAGTTACTCGATAGCCTCATCAGTGGCAAGACT
34579791 CCTCTAAAAGGCGCGCATGTCTTCACTAGGGGAGGACCACCTAGTTGGGAACCCAAAGTCTTCGC
261 CCTCTAAAAGGCGCGCATGTCTTCACTAGGGGAGGACCACCTAGTTGGGAACCCAAAGTCTTCGC
34579856 CAAGCATACAGCGGGTTTGGATATACGTCCCCCGTTTCAAGTGAAGATTATTGCATTAATTTTGT
326 CAAGCATACAGCGGGTTTGGATATACGTCCCCCGTTTCAAGTGAAGATTATTGCATTAATTTTGT
34579921 ATAATCGTCTGCG
391 ATAATCGTCTGCG
* **
34579934 CATCCCACAATAATAGTAGAAAAAGTTCACAGGCTCCTCCAAACACCCTGTCAATATCATGCCCA
1 CATCCCACAATAATAGTAGAAAAAATTCACAGGCTCCTCCAAACACCCCATCAATATCATGCCCA
* * * *
34579999 GCTGATCGAGGGAATCGTGATGCCAAGTACTCATCGTTAGTTGCCCACCCATTGATCGTGCGACC
66 ACTGATCGAGGGAATCGTGATGCCAAGTACTCATCGTTAGTTGCCCACCAACTGATCATGCGACC
*
34580064 TCTTAGTTGTCGCCAGCCCTCCAACCATTTAGGCTGAA-ATCCTCCAAGCAGAATCTAAAGACAT
131 TCTTAGTTGTCGCCAGCCCTCCAACCATTTAGGCT-AAGATCCTCCAAGCAAAATCTAAAGACAT
* * *
34580128 TCCTCACAATTAGAATTGTC-TCTAGAGCCTTTGAAGTTGCTCGATAGCCTCATCAGTGGCAAGA
195 TCATCACAATTAGAATCGTCTTC-AGAGCCTTTGAAGTTACTCGATAGCCTCATCAGTGGCAAGA
34580192 CTCCTCTAAAAGGCGCGCATGTCTTCACTAGGGGAGGACCACCTAGTTGGGAACCCAAAGTCTTC
259 CTCCTCTAAAAGGCGCGCATGTCTTCACTAGGGGAGGACCACCTAGTTGGGAACCCAAAGTCTTC
* * * *
34580257 GCCAAGTATGCTGCGGGTTTGGATATACGTCCCCCGTTTCAAGTGAAGATTATTGCATTGATTTT
324 GCCAAGCATACAGCGGGTTTGGATATACGTCCCCCGTTTCAAGTGAAGATTATTGCATTAATTTT
34580322 GTATAATCGTCTGCG
389 GTATAATCGTCTGCG
34580337 C
1 C
34580338 CTTCCAACAA
Statistics
Matches: 383, Mismatches: 19, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
402 2 0.01
403 379 0.99
404 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (403 bp):
CATCCCACAATAATAGTAGAAAAAATTCACAGGCTCCTCCAAACACCCCATCAATATCATGCCCA
ACTGATCGAGGGAATCGTGATGCCAAGTACTCATCGTTAGTTGCCCACCAACTGATCATGCGACC
TCTTAGTTGTCGCCAGCCCTCCAACCATTTAGGCTAAGATCCTCCAAGCAAAATCTAAAGACATT
CATCACAATTAGAATCGTCTTCAGAGCCTTTGAAGTTACTCGATAGCCTCATCAGTGGCAAGACT
CCTCTAAAAGGCGCGCATGTCTTCACTAGGGGAGGACCACCTAGTTGGGAACCCAAAGTCTTCGC
CAAGCATACAGCGGGTTTGGATATACGTCCCCCGTTTCAAGTGAAGATTATTGCATTAATTTTGT
ATAATCGTCTGCG
Found at i:34586375 original size:39 final size:40
Alignment explanation
Indices: 34586317--34586414 Score: 117
Period size: 39 Copynumber: 2.5 Consensus size: 40
34586307 AAAAAACGTT
* * *
34586317 GCTAAAAATCGCGCATTAGCGACACTTTTAGAAAAACGCC
1 GCTAAAAATAGAGCATTAGCGACACTTTTAGAAAAACACC
*** * *
34586357 GCT-AAAATAGAGCATTAGCGGTGCTTTTTGAAAAGCACC
1 GCTAAAAATAGAGCATTAGCGACACTTTTAGAAAAACACC
34586396 GCTAAAAATAGAGCATTAG
1 GCTAAAAATAGAGCATTAG
34586415 AAAAAAACCT
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
39 31 0.63
40 18 0.37
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.22
Consensus pattern (40 bp):
GCTAAAAATAGAGCATTAGCGACACTTTTAGAAAAACACC
Found at i:34587202 original size:7 final size:7
Alignment explanation
Indices: 34587192--34587243 Score: 50
Period size: 7 Copynumber: 7.3 Consensus size: 7
34587182 TATGGTTTAA
34587192 GGGTTAG
1 GGGTTAG
*
34587199 GGGTTAA
1 GGGTTAG
*
34587206 GAGTTAG
1 GGGTTAG
*
34587213 GGGTTAA
1 GGGTTAG
*
34587220 GTGTTAG
1 GGGTTAG
34587227 GGGTTTAG
1 GGG-TTAG
*
34587235 GGTTTAG
1 GGGTTAG
34587242 GG
1 GG
34587244 TTTAAAGGAT
Statistics
Matches: 35, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
7 29 0.83
8 6 0.17
ACGTcount: A:0.19, C:0.00, G:0.48, T:0.33
Consensus pattern (7 bp):
GGGTTAG
Found at i:34587211 original size:14 final size:14
Alignment explanation
Indices: 34587188--34587231 Score: 70
Period size: 14 Copynumber: 3.1 Consensus size: 14
34587178 GATTTATGGT
*
34587188 TTAAGGGTTAGGGG
1 TTAAGAGTTAGGGG
34587202 TTAAGAGTTAGGGG
1 TTAAGAGTTAGGGG
*
34587216 TTAAGTGTTAGGGG
1 TTAAGAGTTAGGGG
34587230 TT
1 TT
34587232 TAGGGTTTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.23, C:0.00, G:0.43, T:0.34
Consensus pattern (14 bp):
TTAAGAGTTAGGGG
Found at i:34589929 original size:25 final size:23
Alignment explanation
Indices: 34589880--34589938 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 23
34589870 TATTCTTTAG
34589880 ATTTTTTAAAAAAAAAATTTAAA
1 ATTTTTTAAAAAAAAAATTTAAA
* *
34589903 ATTTTTTAAAAATATAAATTTTGAA
1 ATTTTTTAAAAA-A-AAAATTTAAA
34589928 ATTTTTATAAA
1 ATTTTT-TAAA
34589939 TATTTTAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
23 12 0.39
24 1 0.03
25 14 0.45
26 4 0.13
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.46
Consensus pattern (23 bp):
ATTTTTTAAAAAAAAAATTTAAA
Found at i:34590409 original size:11 final size:10
Alignment explanation
Indices: 34590384--34590446 Score: 62
Period size: 9 Copynumber: 6.6 Consensus size: 10
34590374 CACATGGTAT
34590384 ATTTTTA-TA
1 ATTTTTATTA
34590393 ATTTTTATTA
1 ATTTTTATTA
34590403 CATTTTTATT-
1 -ATTTTTATTA
* *
34590413 A-TTTAATTT
1 ATTTTTATTA
34590422 ATTTTTA-TA
1 ATTTTTATTA
*
34590431 ATTTTTATTT
1 ATTTTTATTA
34590441 ATTTTT
1 ATTTTT
34590447 TAGAATCTAT
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
8 6 0.13
9 17 0.38
10 13 0.29
11 9 0.20
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (10 bp):
ATTTTTATTA
Done.