Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56598092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1600000 characters in sequence are not A, C, G, or T
File 118 of 185
Found at i:36985896 original size:25 final size:25
Alignment explanation
Indices: 36985868--36986125 Score: 90
Period size: 25 Copynumber: 10.4 Consensus size: 25
36985858 ATCTGGGAAA
*
36985868 CCTTTGTGGCTAATCTTCTGAAAAT
1 CCTTTGTGGCTAATCTTCTGAAAAG
* *
36985893 CCTTTGTGGCTAATATTGTGAAAAG
1 CCTTTGTGGCTAATCTTCTGAAAAG
* *
36985918 CCCTTGTTGTG-T-AT-TATCT-AGGAA-
1 CCTTTG-TG-GCTAATCT-TCTGA-AAAG
* * *
36985942 CCATTGTGGCTAATCTTGTGAAAAA
1 CCTTTGTGGCTAATCTTCTGAAAAG
** * * **
36985967 CCTTTGTCACATATTATT-TGGGAAG
1 CCTTTGTGGC-TAATCTTCTGAAAAG
* * *
36985992 CCTTTGTAGCTAATTTTTTGAAAAG
1 CCTTTGTGGCTAATCTTCTGAAAAG
* * * *
36986017 CATTTGT-GCCATAT-TATCTGATAAT
1 CCTTTGTGGCTA-ATCT-TCTGAAAAG
* *
36986042 CCTTTGTGACTAATCTTGTGAAAAG
1 CCTTTGTGGCTAATCTTCTGAAAAG
* *
36986067 CCCTTGTGGC-ATAT-TATCTAGGAAA-
1 CCTTTGTGGCTA-ATCT-TCT-GAAAAG
* *
36986092 CCTTTGTGGCTAATCTT-TTAAGAAT
1 CCTTTGTGGCTAATCTTCTGAA-AAG
36986117 CCTTTGTGG
1 CCTTTGTGG
36986126 AGAAGTATAA
Statistics
Matches: 170, Mismatches: 41, Indels: 44
0.67 0.16 0.17
Matches are distributed among these distances:
22 1 0.01
23 4 0.02
24 27 0.16
25 120 0.71
26 17 0.10
27 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (25 bp):
CCTTTGTGGCTAATCTTCTGAAAAG
Found at i:36985993 original size:74 final size:75
Alignment explanation
Indices: 36985857--36986108 Score: 192
Period size: 74 Copynumber: 3.4 Consensus size: 75
36985847 AACATGACAC
* * * **
36985857 TATCTGGGAAACCTTTGTGGCTAATCTTCTGAAAATCCTTTGTGGCTAATATTGTGAAAAGCCCT
1 TATCTAGGAAACCATTGTGGCTAATCTTCTGAAAAACCTTTGTCACTAATATTGTGAAAAGCCCT
36985922 TGTTGTGTAT
66 TGTTGTGTAT
* * ** *
36985932 TATCTAGG-AACCATTGTGGCTAATCTTGTGAAAAACCTTTGTCACATATTATT-TGGGAAGCCT
1 TATCTAGGAAACCATTGTGGCTAATCTTCTGAAAAACCTTTGTCAC-TAATATTGTGAAAAGCCC
* *
36985995 TTGTAGCT-AAT
65 TTGTTG-TGTAT
* * * * * * * * *
36986006 T-TTTTGAAAAGCATT-TGTGCCATAT-TATCTGATAATCCTTTGTGACTAATCTTGTGAAAAGC
1 TATCTAGGAAACCATTGTG-GCTA-ATCT-TCTGAAAAACCTTTGTCACTAATATTGTGAAAAGC
* **
36986068 CCTTGTGGCATAT
63 CCTTGTTGTGTAT
*
36986081 TATCTAGGAAACCTTTGTGGCTAATCTT
1 TATCTAGGAAACCATTGTGGCTAATCTT
36986109 TTAAGAATCC
Statistics
Matches: 131, Mismatches: 35, Indels: 22
0.70 0.19 0.12
Matches are distributed among these distances:
73 5 0.04
74 62 0.47
75 49 0.37
76 13 0.10
77 2 0.02
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.38
Consensus pattern (75 bp):
TATCTAGGAAACCATTGTGGCTAATCTTCTGAAAAACCTTTGTCACTAATATTGTGAAAAGCCCT
TGTTGTGTAT
Found at i:36986124 original size:50 final size:50
Alignment explanation
Indices: 36985893--36986125 Score: 222
Period size: 50 Copynumber: 4.7 Consensus size: 50
36985883 TTCTGAAAAT
* * * **
36985893 CCTTTGTGGCTAATATTGTGAAAAGCCCTTGTTGTGTATTATCTAGG-AA
1 CCTTTGTGGCTAATCTTGTGAAAAGCCTTTGTGGCATATTATCTAGGAAA
* * ** * * *
36985942 CCATTGTGGCTAATCTTGTGAAAAACCTTTGTCACATATTATTTGGGAAG
1 CCTTTGTGGCTAATCTTGTGAAAAGCCTTTGTGGCATATTATCTAGGAAA
* * * * *
36985992 CCTTTGTAGCTAATTTTTTGAAAAGCATTTGTGCCATATTATCT--GATAA
1 CCTTTGTGGCTAATCTTGTGAAAAGCCTTTGTGGCATATTATCTAGGA-AA
* *
36986041 TCCTTTGTGACTAATCTTGTGAAAAGCCCTTGTGGCATATTATCTAGGAAA
1 -CCTTTGTGGCTAATCTTGTGAAAAGCCTTTGTGGCATATTATCTAGGAAA
* *
36986092 CCTTTGTGGCTAATCTT-TTAAGAATCCTTTGTGG
1 CCTTTGTGGCTAATCTTGTGAA-AAGCCTTTGTGG
36986126 AGAAGTATAA
Statistics
Matches: 146, Mismatches: 32, Indels: 11
0.77 0.17 0.06
Matches are distributed among these distances:
48 2 0.01
49 41 0.28
50 99 0.68
51 2 0.01
52 2 0.01
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (50 bp):
CCTTTGTGGCTAATCTTGTGAAAAGCCTTTGTGGCATATTATCTAGGAAA
Found at i:36991565 original size:27 final size:28
Alignment explanation
Indices: 36991519--36991575 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 28
36991509 TGTATGGCTA
*
36991519 ATCTTGTGAAAAACACTTGT-GTGTATT
1 ATCTTGTGAAAAACACTTGTGGCGTATT
*
36991546 ATCTTGTGAAAAGAC-TTTGTGGCGTATT
1 ATCTTGTGAAAA-ACACTTGTGGCGTATT
36991574 AT
1 AT
36991576 TTGGGAAGCC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
27 16 0.62
28 10 0.38
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (28 bp):
ATCTTGTGAAAAACACTTGTGGCGTATT
Found at i:36991631 original size:77 final size:77
Alignment explanation
Indices: 36991469--36991632 Score: 213
Period size: 77 Copynumber: 2.1 Consensus size: 77
36991459 TTTGTGGCTA
*
36991469 ATCTTGTGAAAAGCCTTTGTGGCGTATTATCTAAGAAGCCTGTATGGCTAATCTTGTGAAAAACA
1 ATCTTGTGAAAAGACTTTGTGGCGTATTATCTAAGAAGCCTGTATGGCTAATCTTGTGAAAAACA
* *
36991534 CTTGTGTGTATT
66 CTAGTGCGTATT
* ** * * * * *
36991546 ATCTTGTGAAAAGACTTTGTGGCGTATTATTTGGGAAGCCTTTGTGGCTACTCTTGTGAAAATCT
1 ATCTTGTGAAAAGACTTTGTGGCGTATTATCTAAGAAGCCTGTATGGCTAATCTTGTGAAAAACA
36991611 CTAGTGGCGTATT
66 CTAGT-GCGTATT
36991624 ATC-TGTGAA
1 ATCTTGTGAA
36991633 GCCTTTGTCG
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
77 66 0.88
78 9 0.12
ACGTcount: A:0.25, C:0.14, G:0.24, T:0.37
Consensus pattern (77 bp):
ATCTTGTGAAAAGACTTTGTGGCGTATTATCTAAGAAGCCTGTATGGCTAATCTTGTGAAAAACA
CTAGTGCGTATT
Found at i:37004876 original size:98 final size:98
Alignment explanation
Indices: 37004748--37004942 Score: 327
Period size: 98 Copynumber: 2.0 Consensus size: 98
37004738 AAAAATCATA
* * * * *
37004748 AAGGAAATTTTCTGAGTTTGGGATTTTAAAGGAATTGTGCCTTAACGTATTGGGTGTGTTTTCTT
1 AAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGTTTTCTT
* *
37004813 AAATCTTGGATAAGTGGATGTTCTTTTAAAGTG
66 AAATCTTGGATAAATGGATGTTCCTTTAAAGTG
37004846 AAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGTTTTCTT
1 AAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGTTTTCTT
37004911 AAATCTTGGATAAATGGATGTTCCTTTAAAGT
66 AAATCTTGGATAAATGGATGTTCCTTTAAAGT
37004943 TTTTCATTAT
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
98 90 1.00
ACGTcount: A:0.27, C:0.10, G:0.25, T:0.39
Consensus pattern (98 bp):
AAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGTTTTCTT
AAATCTTGGATAAATGGATGTTCCTTTAAAGTG
Found at i:37013289 original size:17 final size:17
Alignment explanation
Indices: 37013259--37013292 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
37013249 ATAGAAACTG
37013259 TAACAATCTCCGTACAA
1 TAACAATCTCCGTACAA
37013276 TAACATATCT-CGTACAA
1 TAACA-ATCTCCGTACAA
37013293 GTGCGCATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.41, C:0.26, G:0.06, T:0.26
Consensus pattern (17 bp):
TAACAATCTCCGTACAA
Found at i:37014430 original size:700 final size:703
Alignment explanation
Indices: 37013446--37014846 Score: 2531
Period size: 700 Copynumber: 2.0 Consensus size: 703
37013436 ATATAATACC
37013446 TAATAACATTTCATATCAATCAACAATTTTAATTTATTTCAATTCAATCCAGCTCCATTTCACTT
1 TAATAACATTTCATATCAATCAACAATTTTAATTTATTTCAATTCAATCCAGCTCCATTTCACTT
37013511 TCTAACCATGTATGCCAACATGACCAATAATCAAAGCCATATCATAGCATAGTTGTAAACAAACC
66 TCTAACCATGTATGCCAACATGACCAATAATCAAAGCCATATCATAGCATAGTTGTAAACAAACC
*
37013576 AACACAAGAATACACATAAAACAAATAAGGTTGGTAAGTTTCGTATGAACTTACCTTTTCAAAAT
131 AACACAAGAATACACATAAAACAAATAAGGCTGGTAAGTTTCGTATGAACTTACCTTTTCAAAAT
37013641 GAAAAAATGAGTGGATCTTTTAGGGACTAATCTGTAATTTTTAATTTTCCTTTATTAGCTCCATT
196 GAAAAAATGAGTGGATCTTTTAGGGACTAATCTGTAATTTTTAATTTTCCTTTATTAGCTCCATT
37013706 TTGATACAAGTCTTGATCAAATAACTGGCCGAAAGTTTCAAGGGTTTTGAAATATTTTTATTCTT
261 TTGATACAAGTCTTGATCAAATAACTGGCCGAAAGTTTCAAGGGTTTTGAAATATTTTTATTCTT
*
37013771 TATTTTCTTTCCTCTTGGTTGAAATGAGGAATGAAGGAATATGATG-TATTTTTTCCCACTAACT
326 TATTTTCTTTCCTCTTGGTTGAAATGAGGAATGAAGGAATATGATGATATTTTTTCCCACTAACA
* * * *
37013835 TGGTTTATATATGTAACACCCTT-CGCTCGACCAGATTGTCAGGTTTGAGCTACAAAATGCTACA
391 TGGTTTATACATGTAACAACCTTCCGCTCGACCAGATTGCCAGGTTTGAGATACAAAATGCTACA
* * *
37013899 GTCGAAAAATGAAATAGTTACAGACATTAATCGATCAATTC-TAAAAAAAAACCTTTAAATTCCA
456 ATCGAAAAATGAAAGAGTTACAGACATTAATCGATCAATTCTTAAAAAAAAACCTTTAAACTCCA
37013963 TTATTTCAATCATTCAACACAATTTAAATCCTTTCCTATGTCATATTCAAGCTTCCGTAAGCTCT
521 TTATTTCAATCATTCAACACAATTTAAATCCTTTCCTATGTCATATTCAAGCTTCCGTAAGCTCT
* * *
37014028 AATGTTGGCTCGGGGATCGAATAAAGACCAAACTGCAAAGATTTCAAAAGTTTAGAATGGCATTA
586 AATGTTGGCTC-GGGATCAAATAAAGACCAAACTGCAAAGATTTCAAAAGTTTAGAATGACATCA
37014093 TGATGTAACACCCCAAACATTCAATAGGTCAACCAGTCAAACAAAAATGATCAA
650 TGATGTAACACCCCAAACATTCAATAGGTCAACCAGTCAAACAAAAATGATCAA
*
37014147 TAATAACATTTCATATCAATCAACATTTTTAATTTATTTCAATTCAATCCAGCTCCATTTCACTT
1 TAATAACATTTCATATCAATCAACAATTTTAATTTATTTCAATTCAATCCAGCTCCATTTCACTT
* *
37014212 TCTAACCATGTATGCCAACATGATCAATATTCAAAGCCATATCATAGCATAGTTGTAAACAAACC
66 TCTAACCATGTATGCCAACATGACCAATAATCAAAGCCATATCATAGCATAGTTGTAAACAAACC
*
37014277 AACACAAGAATACACAT-ACACAAATAAGGCTGGTAAGTTTCGTATGAACTTACCTTTTCAAAAT
131 AACACAAGAATACACATAAAACAAATAAGGCTGGTAAGTTTCGTATGAACTTACCTTTTCAAAAT
37014341 GAAAAAATGAGTGGATCTTTTAGGGACTAATCTGTAATTTTTAATTTTCCTTTATTAGCTCCATT
196 GAAAAAATGAGTGGATCTTTTAGGGACTAATCTGTAATTTTTAATTTTCCTTTATTAGCTCCATT
*
37014406 TTGATCCAAGTCTTGATCAAATAACTGGCCGAAAGTTTCAAGGGTTTTGAAATATTTTTATTCTT
261 TTGATACAAGTCTTGATCAAATAACTGGCCGAAAGTTTCAAGGGTTTTGAAATATTTTTATTCTT
*
37014471 TATTTTCTTTCCTCTTGGTTGAAATGAGGAATGAAGGAATATGATGAAATTTTTTTTCCCACTAA
326 TATTTTCTTTCCTCTTGGTTGAAATGAGGAATGAAGGAATATGATG--ATATTTTTTCCCACTAA
37014536 CATGGTTTATACATGTAACAACCTTCGCGCTCGACCAGATTGCCAGGTTTGAGATACAAAATGCT
389 CATGGTTTATACATGTAACAACCTTC-CGCTCGACCAGATTGCCAGGTTTGAGATACAAAATGCT
* *
37014601 ACAATTGAAAAATGAAAGAGTTACAGACATTAATCGATCAATTCTTAAATAAAAACCTTTAAACT
453 ACAATCGAAAAATGAAAGAGTTACAGACATTAATCGATCAATTCTTAAAAAAAAACCTTTAAACT
* * *
37014666 CCATTATTTCAATCATTCAACACTATTTAAATCCTTTCCTATGTCATATTCGAGCTTCTGTAAGC
518 CCATTATTTCAATCATTCAACACAATTTAAATCCTTTCCTATGTCATATTCAAGCTTCCGTAAGC
37014731 TCTAATGTTGGCTCGGGATCAAATAAAGACCAAACTGCAAAGATTTCAAAAGTTTAGAATGACAT
583 TCTAATGTTGGCTCGGGATCAAATAAAGACCAAACTGCAAAGATTTCAAAAGTTTAGAATGACAT
37014796 CATGATGTAACACCCCAAACATTCAATAGGTCAACCAGTCAAACAAAAATG
648 CATGATGTAACACCCCAAACATTCAATAGGTCAACCAGTCAAACAAAAATG
37014847 CTACGATTCC
Statistics
Matches: 671, Mismatches: 23, Indels: 8
0.96 0.03 0.01
Matches are distributed among these distances:
700 220 0.33
701 144 0.21
703 37 0.06
705 176 0.26
706 94 0.14
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.33
Consensus pattern (703 bp):
TAATAACATTTCATATCAATCAACAATTTTAATTTATTTCAATTCAATCCAGCTCCATTTCACTT
TCTAACCATGTATGCCAACATGACCAATAATCAAAGCCATATCATAGCATAGTTGTAAACAAACC
AACACAAGAATACACATAAAACAAATAAGGCTGGTAAGTTTCGTATGAACTTACCTTTTCAAAAT
GAAAAAATGAGTGGATCTTTTAGGGACTAATCTGTAATTTTTAATTTTCCTTTATTAGCTCCATT
TTGATACAAGTCTTGATCAAATAACTGGCCGAAAGTTTCAAGGGTTTTGAAATATTTTTATTCTT
TATTTTCTTTCCTCTTGGTTGAAATGAGGAATGAAGGAATATGATGATATTTTTTCCCACTAACA
TGGTTTATACATGTAACAACCTTCCGCTCGACCAGATTGCCAGGTTTGAGATACAAAATGCTACA
ATCGAAAAATGAAAGAGTTACAGACATTAATCGATCAATTCTTAAAAAAAAACCTTTAAACTCCA
TTATTTCAATCATTCAACACAATTTAAATCCTTTCCTATGTCATATTCAAGCTTCCGTAAGCTCT
AATGTTGGCTCGGGATCAAATAAAGACCAAACTGCAAAGATTTCAAAAGTTTAGAATGACATCAT
GATGTAACACCCCAAACATTCAATAGGTCAACCAGTCAAACAAAAATGATCAA
Found at i:37026110 original size:93 final size:93
Alignment explanation
Indices: 37025946--37026132 Score: 329
Period size: 93 Copynumber: 2.0 Consensus size: 93
37025936 TTTCCTTCAA
* *
37025946 GATGTTGAATTTTGCTGCTCAAAGAACTTCTGCAATGCTTCCCTCAAACTCTTGTGTTACTCTCT
1 GATGCTGAATTTTGCTACTCAAAGAACTTCTGCAATGCTTCCCTCAAACTCTTGTGTTACTCTCT
*
37026011 CAAATGGGAAGTTAAAGAATGAAGAATG
66 CAAATGGGAAGTGAAAGAATGAAGAATG
* *
37026039 GATGCTGAATTTTTCTACTCAAAGAACTTCTGCAATGCTTCCCTCAAACTCTTGTGTTGCTCTCT
1 GATGCTGAATTTTGCTACTCAAAGAACTTCTGCAATGCTTCCCTCAAACTCTTGTGTTACTCTCT
37026104 CAAATGGGAAGTGAAAGAATGAAGAATG
66 CAAATGGGAAGTGAAAGAATGAAGAATG
37026132 G
1 G
37026133 GAGAAGAGAT
Statistics
Matches: 89, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 89 1.00
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.32
Consensus pattern (93 bp):
GATGCTGAATTTTGCTACTCAAAGAACTTCTGCAATGCTTCCCTCAAACTCTTGTGTTACTCTCT
CAAATGGGAAGTGAAAGAATGAAGAATG
Found at i:37028959 original size:9 final size:9
Alignment explanation
Indices: 37028945--37028969 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
37028935 ATGAGGGTAT
37028945 TTTTATATA
1 TTTTATATA
37028954 TTTTATATA
1 TTTTATATA
37028963 TTTTATA
1 TTTTATA
37028970 AAATAAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (9 bp):
TTTTATATA
Found at i:37035666 original size:17 final size:17
Alignment explanation
Indices: 37035644--37035676 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
37035634 TTTAGTGCAC
*
37035644 ATTGTCGTTGCATTTTT
1 ATTGTCATTGCATTTTT
37035661 ATTGTCATTGCATTTT
1 ATTGTCATTGCATTTT
37035677 AATATTAGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.12, G:0.15, T:0.58
Consensus pattern (17 bp):
ATTGTCATTGCATTTTT
Found at i:37041175 original size:15 final size:15
Alignment explanation
Indices: 37041157--37041187 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
37041147 AAACCTATAA
*
37041157 AAATTAAATTAAACT
1 AAATTAAATAAAACT
37041172 AAATTAAATAAAACT
1 AAATTAAATAAAACT
37041187 A
1 A
37041188 CTAAGTAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (15 bp):
AAATTAAATAAAACT
Found at i:37046081 original size:23 final size:23
Alignment explanation
Indices: 37046040--37046087 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
37046030 GGTAAATAGT
* *
37046040 TTAAATTGTGAATGTTTGATTTA
1 TTAAATTGTGAATGATTGAGTTA
37046063 TTAAATTTGTGAAT-ATTGAGTTA
1 TTAAA-TTGTGAATGATTGAGTTA
37046086 TT
1 TT
37046088 TAGGGATGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 14 0.64
24 8 0.36
ACGTcount: A:0.31, C:0.00, G:0.17, T:0.52
Consensus pattern (23 bp):
TTAAATTGTGAATGATTGAGTTA
Found at i:37056065 original size:33 final size:33
Alignment explanation
Indices: 37056018--37056090 Score: 137
Period size: 33 Copynumber: 2.2 Consensus size: 33
37056008 CCTGGCTCTG
37056018 ATGCTAATGTGAACATTTACTAATTGTAATTATC
1 ATGC-AATGTGAACATTTACTAATTGTAATTATC
37056052 ATGCAATGTGAACATTTACTAATTGTAATTATC
1 ATGCAATGTGAACATTTACTAATTGTAATTATC
37056085 ATGCAA
1 ATGCAA
37056091 GATTATTTCA
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
33 35 0.90
34 4 0.10
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.38
Consensus pattern (33 bp):
ATGCAATGTGAACATTTACTAATTGTAATTATC
Found at i:37056563 original size:15 final size:15
Alignment explanation
Indices: 37056543--37056571 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
37056533 CTTAGTTTAC
37056543 ACGTTCATGCCCAAA
1 ACGTTCATGCCCAAA
37056558 ACGTTCATGCCCAA
1 ACGTTCATGCCCAA
37056572 CTCTTTAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.34, G:0.14, T:0.21
Consensus pattern (15 bp):
ACGTTCATGCCCAAA
Found at i:37058450 original size:24 final size:24
Alignment explanation
Indices: 37058423--37058502 Score: 81
Period size: 25 Copynumber: 3.2 Consensus size: 24
37058413 TACCCGATAT
*
37058423 TGGCTCGCATGAGCTTCCTGATT-A
1 TGGCTCACATGAGCTTCCTG-TTAA
** *
37058447 TGGCTCTTATGAGCTTCCCGTTACA
1 TGGCTCACATGAGCTTCCTGTTA-A
*
37058472 TGGCTCACATTAGCTTCCTGTTACA
1 TGGCTCACATGAGCTTCCTGTTA-A
37058497 TGGCTC
1 TGGCTC
37058503 GAAAGGGATA
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
23 2 0.04
24 17 0.36
25 28 0.60
ACGTcount: A:0.16, C:0.28, G:0.21, T:0.35
Consensus pattern (24 bp):
TGGCTCACATGAGCTTCCTGTTAA
Found at i:37058476 original size:49 final size:48
Alignment explanation
Indices: 37058345--37058491 Score: 127
Period size: 49 Copynumber: 3.0 Consensus size: 48
37058335 CATCCCGACA
* * * **
37058345 TATGGTTCTTACGAGCTTCCCGATTAAAGGCTCTCCCATGAGCTTCCCAAT
1 TATGGCTCTTACGAGCTTCCCG-TTAATGG--CTCACATGAGCTTCCTGAT
* * *
37058396 TAATGGCTCTT-CGGAG-TTACCCGATATTGGCTCGCATGAGCTTCCTGAT
1 T-ATGGCTCTTAC-GAGCTT-CCCGTTAATGGCTCACATGAGCTTCCTGAT
* *
37058445 TATGGCTCTTATGAGCTTCCCGTTACATGGCTCACATTAGCTTCCTG
1 TATGGCTCTTACGAGCTTCCCGTTA-ATGGCTCACATGAGCTTCCTG
37058492 TTACATGGCT
Statistics
Matches: 78, Mismatches: 12, Indels: 14
0.75 0.12 0.13
Matches are distributed among these distances:
48 18 0.23
49 37 0.47
51 8 0.10
52 15 0.19
ACGTcount: A:0.19, C:0.27, G:0.20, T:0.33
Consensus pattern (48 bp):
TATGGCTCTTACGAGCTTCCCGTTAATGGCTCACATGAGCTTCCTGAT
Found at i:37061775 original size:27 final size:27
Alignment explanation
Indices: 37061703--37061804 Score: 98
Period size: 27 Copynumber: 3.8 Consensus size: 27
37061693 CGGAGTACAT
*
37061703 CACAAAGGCTA-TCTTTACAGGATTCGC
1 CACAAAGGCTATTCTTT-CAGAATTCGC
* * * * * * *
37061730 CATAGAGGTTATCCCTTCATAATTTGC
1 CACAAAGGCTATTCTTTCAGAATTCGC
* *
37061757 CACTAAGGCTATTCTTTCAGAGTTCGC
1 CACAAAGGCTATTCTTTCAGAATTCGC
37061784 CACAAAGGCTATTCTTTCAGA
1 CACAAAGGCTATTCTTTCAGA
37061805 TTTTACCATA
Statistics
Matches: 56, Mismatches: 18, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
27 53 0.95
28 3 0.05
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (27 bp):
CACAAAGGCTATTCTTTCAGAATTCGC
Found at i:37061817 original size:27 final size:27
Alignment explanation
Indices: 37061756--37061828 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 27
37061746 TCATAATTTG
* *
37061756 CCACTAAGGCTATTCTTTCAGAGTTCG
1 CCACAAAGGCTATTCTTTCAGAGTTCA
* *
37061783 CCACAAAGGCTATTCTTTCAGATTTTA
1 CCACAAAGGCTATTCTTTCAGAGTTCA
* * *
37061810 CCATAAAGGTTTTTCTTTC
1 CCACAAAGGCTATTCTTTC
37061829 CTTATGTGTT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (27 bp):
CCACAAAGGCTATTCTTTCAGAGTTCA
Found at i:37064857 original size:29 final size:30
Alignment explanation
Indices: 37064822--37064897 Score: 91
Period size: 30 Copynumber: 2.6 Consensus size: 30
37064812 TTAACATATG
*
37064822 ATAAAATTATATTTTAATTT-TTAAAAATA
1 ATAAAATTATAATTTAATTTGTTAAAAATA
* * *
37064851 ATAAAATTTTAATTTATTTTGTTAAAAATT
1 ATAAAATTATAATTTAATTTGTTAAAAATA
* *
37064881 ATTAAATTATAAATTAA
1 ATAAAATTATAATTTAA
37064898 AAAAAATTAT
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
29 17 0.45
30 21 0.55
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (30 bp):
ATAAAATTATAATTTAATTTGTTAAAAATA
Found at i:37066762 original size:52 final size:52
Alignment explanation
Indices: 37066705--37066810 Score: 203
Period size: 52 Copynumber: 2.0 Consensus size: 52
37066695 ATCAATGAAA
*
37066705 AATCATGCAATAATATTTAAACACAATCCTTTAAAACCCTAGTTAAGAATTT
1 AATCATGCAATAATATTTAAACACAATCCTTTAAAACCCTAATTAAGAATTT
37066757 AATCATGCAATAATATTTAAACACAATCCTTTAAAACCCTAATTAAGAATTT
1 AATCATGCAATAATATTTAAACACAATCCTTTAAAACCCTAATTAAGAATTT
37066809 AA
1 AA
37066811 GGATTTTTAA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.46, C:0.17, G:0.05, T:0.32
Consensus pattern (52 bp):
AATCATGCAATAATATTTAAACACAATCCTTTAAAACCCTAATTAAGAATTT
Found at i:37067210 original size:22 final size:22
Alignment explanation
Indices: 37067180--37067237 Score: 89
Period size: 22 Copynumber: 2.6 Consensus size: 22
37067170 ATTTCCTCTC
37067180 AATTCCTCTCAAATTCATTCCAA
1 AATT-CTCTCAAATTCATTCCAA
* *
37067203 AATTCTCTCAATTTCCTTCCAA
1 AATTCTCTCAAATTCATTCCAA
37067225 AATTCTCTCAAAT
1 AATTCTCTCAAAT
37067238 CTATATTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
22 28 0.88
23 4 0.12
ACGTcount: A:0.33, C:0.29, G:0.00, T:0.38
Consensus pattern (22 bp):
AATTCTCTCAAATTCATTCCAA
Found at i:37067265 original size:51 final size:51
Alignment explanation
Indices: 37067207--37067322 Score: 187
Period size: 51 Copynumber: 2.3 Consensus size: 51
37067197 TTCCAAAATT
* * *
37067207 CTCTCAATTTCCTTCCAAAATTCTCTCAAATCTATATTTAATTTCAATTTC
1 CTCTCAATTTCCTTCAAAAATTCTCTCAAATCCATATTTAATTTAAATTTC
*
37067258 CTCTCAATTTCCTTCAAAAATTTTCTCAAATCCATATTTAATTTAAATTTC
1 CTCTCAATTTCCTTCAAAAATTCTCTCAAATCCATATTTAATTTAAATTTC
*
37067309 TTCTCAATTTCCTT
1 CTCTCAATTTCCTT
37067323 TTTTAAAATA
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 60 1.00
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.47
Consensus pattern (51 bp):
CTCTCAATTTCCTTCAAAAATTCTCTCAAATCCATATTTAATTTAAATTTC
Found at i:37068475 original size:7 final size:7
Alignment explanation
Indices: 37068465--37068489 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
37068455 ATTCGATTGA
37068465 TATTTAG
1 TATTTAG
37068472 TATTTAG
1 TATTTAG
37068479 TATTTAG
1 TATTTAG
37068486 TATT
1 TATT
37068490 ATGTATGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:37069168 original size:18 final size:18
Alignment explanation
Indices: 37069142--37069176 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
37069132 AGGTGCGTTT
*
37069142 CCTAGCCCTTATATGTAC
1 CCTAACCCTTATATGTAC
37069160 CCTAACCCTTATATGTA
1 CCTAACCCTTATATGTA
37069177 TCCTTTTCCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (18 bp):
CCTAACCCTTATATGTAC
Found at i:37072193 original size:126 final size:125
Alignment explanation
Indices: 37071897--37072267 Score: 530
Period size: 126 Copynumber: 3.0 Consensus size: 125
37071887 CCCAAACATG
* * *
37071897 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCCCAAATAGCATCCTGG
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* * **
37071962 TATAAGCGATTTTATATTATTTTATCAGAAACGTC-AAAAAAAATTA-TACATTAAAAGAC
66 TAGAAGCGATTTTATATTATTTTATCAGAAACGTCAAAAAAAAATTATTTC-TTCCAAGAC
** * *
37072021 CTACTGTAGCAAAAGCGCGTTGACGAGGCCGCAATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* ** **
37072086 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATAATTATTTCTTCCGTGAC
66 TAGAAGCGATTTTATATTATTTTATCAGAAACGTCAAAAAAA-AATTATTTCTTCCAAGAC
*
37072147 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATATCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
***
37072212 TAGAAGCGATTTTATATTATTTTATCAGAAACGTCAACTCAAAATTATTTCTTCCA
66 TAGAAGCGATTTTATATTATTTTATCAGAAACGTCAAAAAAAAATTATTTCTTCCA
37072268 GGATCTTAAA
Statistics
Matches: 216, Mismatches: 28, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
124 89 0.41
125 19 0.09
126 106 0.49
127 2 0.01
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.30
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
TAGAAGCGATTTTATATTATTTTATCAGAAACGTCAAAAAAAAATTATTTCTTCCAAGAC
Found at i:37072861 original size:24 final size:24
Alignment explanation
Indices: 37072828--37072879 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
37072818 TTTGTAGGTC
*
37072828 AAATAAATTATGCTAATAAATACT
1 AAATAAATTATACTAATAAATACT
*
37072852 AAATATATTATACTAATAAATACT
1 AAATAAATTATACTAATAAATACT
37072876 AAAT
1 AAAT
37072880 CTTCTAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.56, C:0.08, G:0.02, T:0.35
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACT
Found at i:37073043 original size:16 final size:16
Alignment explanation
Indices: 37073022--37073052 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
37073012 GCCTATCTTG
37073022 AACTATGTAGGGAATT
1 AACTATGTAGGGAATT
37073038 AACTATGTAGGGAAT
1 AACTATGTAGGGAAT
37073053 GTGCTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.06, G:0.26, T:0.29
Consensus pattern (16 bp):
AACTATGTAGGGAATT
Found at i:37079754 original size:51 final size:50
Alignment explanation
Indices: 37079687--37079806 Score: 145
Period size: 51 Copynumber: 2.4 Consensus size: 50
37079677 CAAATTCATT
* * *
37079687 TTTCATTT-T-CATTTTCATTTTGGAGAAAACCACATTCATTTTCAAATGG
1 TTTCATTTCTCCATTTTCATTTTGGAGAAAACCACAATAATTTCCAAAT-G
* *
37079736 TTTCATTTCTCCATTTTCATTTTGGAGTAAACCATAATAATTTCCAAATG
1 TTTCATTTCTCCATTTTCATTTTGGAGAAAACCACAATAATTTCCAAATG
*
37079786 TTTCCCATTTCTCAATTTTCA
1 TTT--CATTTCTCCATTTTCA
37079807 CCATTTCTAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
49 8 0.13
50 5 0.08
51 33 0.54
52 15 0.25
ACGTcount: A:0.28, C:0.19, G:0.07, T:0.46
Consensus pattern (50 bp):
TTTCATTTCTCCATTTTCATTTTGGAGAAAACCACAATAATTTCCAAATG
Found at i:37081646 original size:27 final size:25
Alignment explanation
Indices: 37081590--37081647 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 25
37081580 ATTAATTGTG
37081590 ATATTAGTTATTTATGTTCTTAATT
1 ATATTAGTTATTTATGTTCTTAATT
*
37081615 ATATTAGTTATACTTATGTT-TTATTT
1 ATATTAGTTAT--TTATGTTCTTAATT
37081641 ATTATTA
1 A-TATTA
37081648 ATTTGGGGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 11 0.38
26 6 0.21
27 12 0.41
ACGTcount: A:0.29, C:0.03, G:0.07, T:0.60
Consensus pattern (25 bp):
ATATTAGTTATTTATGTTCTTAATT
Found at i:37083328 original size:15 final size:17
Alignment explanation
Indices: 37083293--37083330 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
37083283 ATTAAACATA
*
37083293 AAAATGAAAATAAACTT
1 AAAATTAAAATAAACTT
37083310 AAAATTAAAA-AAA-TT
1 AAAATTAAAATAAACTT
37083325 AAAATT
1 AAAATT
37083331 CCTTTTAGGC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 8 0.40
16 3 0.15
17 9 0.45
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (17 bp):
AAAATTAAAATAAACTT
Found at i:37087053 original size:20 final size:20
Alignment explanation
Indices: 37087012--37087058 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
37087002 ATAAATACGA
* *
37087012 TATCGAT-AACTTTTTTTTG
1 TATCGATAAACTTATTTTAG
*
37087031 TATCGATAAAGTTATTTTAG
1 TATCGATAAACTTATTTTAG
37087051 TATCGATA
1 TATCGATA
37087059 GTGTTGGTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 7 0.29
20 17 0.71
ACGTcount: A:0.30, C:0.09, G:0.13, T:0.49
Consensus pattern (20 bp):
TATCGATAAACTTATTTTAG
Found at i:37098236 original size:21 final size:21
Alignment explanation
Indices: 37098212--37098254 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
37098202 ATTTTAAAAT
37098212 TAATTGCACATTGAA-TTGTAA
1 TAATTGCACATT-AATTTGTAA
*
37098233 TAATTGCATATTAATTTGTAA
1 TAATTGCACATTAATTTGTAA
37098254 T
1 T
37098255 TTTTGTGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 2 0.10
21 18 0.90
ACGTcount: A:0.37, C:0.07, G:0.12, T:0.44
Consensus pattern (21 bp):
TAATTGCACATTAATTTGTAA
Found at i:37099735 original size:32 final size:32
Alignment explanation
Indices: 37099692--37099769 Score: 102
Period size: 32 Copynumber: 2.4 Consensus size: 32
37099682 AATTAGTTTC
*
37099692 TTGGATTTTGAAATTATTATGTTTTAAACTTG
1 TTGGATATTGAAATTATTATGTTTTAAACTTG
* * * *
37099724 TTTGATATTGAATTTATTATTTTTTAAGCTTG
1 TTGGATATTGAAATTATTATGTTTTAAACTTG
*
37099756 TTGGATATTAAAAT
1 TTGGATATTGAAAT
37099770 GATTGACAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.29, C:0.03, G:0.14, T:0.54
Consensus pattern (32 bp):
TTGGATATTGAAATTATTATGTTTTAAACTTG
Found at i:37101234 original size:15 final size:15
Alignment explanation
Indices: 37101192--37101234 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
37101182 CCAAAAAAGT
*
37101192 AAATCATTTTCCA-A
1 AAATCATTTTCTAGA
37101206 AAATCATTTTCTAGA
1 AAATCATTTTCTAGA
37101221 AAAT-ATTTTACTAG
1 AAATCATTTT-CTAG
37101235 CAAACAAATG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 17 0.65
15 9 0.35
ACGTcount: A:0.42, C:0.14, G:0.05, T:0.40
Consensus pattern (15 bp):
AAATCATTTTCTAGA
Found at i:37125983 original size:29 final size:29
Alignment explanation
Indices: 37125950--37126006 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
37125940 GAATGAAGAG
*
37125950 ATTTGTTGCAAATCCTATGACGACCCTAA
1 ATTTGTTACAAATCCTATGACGACCCTAA
37125979 ATTTGTTACAAATCCTATGACGACCCTA
1 ATTTGTTACAAATCCTATGACGACCCTA
37126007 GAATACGATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.32, C:0.25, G:0.12, T:0.32
Consensus pattern (29 bp):
ATTTGTTACAAATCCTATGACGACCCTAA
Found at i:37135174 original size:44 final size:44
Alignment explanation
Indices: 37135031--37135267 Score: 124
Period size: 44 Copynumber: 5.1 Consensus size: 44
37135021 TATCTCTTTG
* *
37135031 AAGTTGTAGTGGAGCAAGACGAAGCTACAAATCCTATACCCCTA
1 AAGTTGCAGTGGAGAAAGACGAAGCTACAAATCCTATACCCCTA
* * * * * *
37135075 AAGTTGCAATGGGTTGGAATAAAACTACAAAG--GCAAATCATAT-CTCTCTA
1 AAGTTGC-A---G-TGG-A-GAAA-GACGAAGCTACAAATCCTATAC-CCCTA
*
37135125 AAGTTGCAGTGGAGAAAGACGAAGCTACAAATCCTATACCCCTG
1 AAGTTGCAGTGGAGAAAGACGAAGCTACAAATCCTATACCCCTA
* *** * * *
37135169 AAGTTGTAGTGG-GTCGGATTGAAGTTACCATAGCGAATCTTAT-CTCCCTA
1 AAGTTGCAGTGGAGAAAGA-CGAAG----C-TA-CAAATCCTATAC-CCCTA
* *
37135219 AAGTTGCAGTGGAGCAAGACGAAGCTACAAATCCTATACCCTTA
1 AAGTTGCAGTGGAGAAAGACGAAGCTACAAATCCTATACCCCTA
37135263 AAGTT
1 AAGTT
37135268 ATAGTAGGTT
Statistics
Matches: 140, Mismatches: 31, Indels: 44
0.65 0.14 0.20
Matches are distributed among these distances:
42 5 0.04
43 6 0.04
44 51 0.36
45 8 0.06
46 2 0.01
48 2 0.01
49 8 0.06
50 48 0.34
51 5 0.04
52 5 0.04
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (44 bp):
AAGTTGCAGTGGAGAAAGACGAAGCTACAAATCCTATACCCCTA
Found at i:37135300 original size:188 final size:187
Alignment explanation
Indices: 37134965--37135512 Score: 627
Period size: 188 Copynumber: 2.9 Consensus size: 187
37134955 TGAAATAGTG
* * * **
37134965 AATCCTATACCCCTTGAAGTTGCAGTGGGTTGAATTGAAGCTACCATAGTGAATCTTATCTCTTT
1 AATCCTATACCCC-TGAAGTTGCAGTGGGTCGGATTGAAG-TACCATAGCGAATCTTATCTCCCT
* * * * *
37135030 GAAGTTGTAGTGGAGCAAGACGAAGCTACAAATCCTATACCCCTAAAGTTGCAATGGGTTGGAAT
64 AAAGTTGCAGTGGAGCAAGACGAAGCTACAAATCCTATACCCTTAAAGTTGTAGTGGGTT-GAAT
* *
37135095 AAAACTACAAAGGCAAATCATATCTCTC-TAAAGTTGCAGTGGAGAAAGACGAAGCTAC-A
128 GAAACTACAAAGGCAAATCATATCTC-CATAAAGTTGCAATGGAGAAAGACGAAGCTACAA
*
37135154 AATCCTATACCCCTGAAGTTGTAGTGGGTCGGATTGAAGTTACCATAGCGAATCTTATCTCCCTA
1 AATCCTATACCCCTGAAGTTGCAGTGGGTCGGATTGAAG-TACCATAGCGAATCTTATCTCCCTA
* *
37135219 AAGTTGCAGTGGAGCAAGACGAAGCTACAAATCCTATACCCTTAAAGTTATAGTAGGTTAGAATG
65 AAGTTGCAGTGGAGCAAGACGAAGCTACAAATCCTATACCCTTAAAGTTGTAGTGGGTT-GAATG
* * * * * *
37135284 AAACTACAATGGCAAATCTTATTTCCATGAAGTTGCAATGGAGCAAGATGAAGCTACAA
129 AAACTACAAAGGCAAATCATATCTCCATAAAGTTGCAATGGAGAAAGACGAAGCTACAA
** * * * ** * * *
37135343 AATCCTATTTCCCTGAAGATGCAGTGGATCAGATCAAAG-ACAATGGCAAATCTTATCTCCCTAA
1 AATCCTATACCCCTGAAGTTGCAGTGGGTCGGATTGAAGTACCATAGCGAATCTTATCTCCCTAA
* * * * *
37135407 AGTTACAATGGAGCAAGATGAAGCTACAAATCATATACCCTTGAAGTTGTAGTGGGTTGAAGTGA
66 AGTTGCAGTGGAGCAAGACGAAGCTACAAATCCTATACCCTTAAAGTTGTAGTGGGTTGAA-TGA
* * * * *
37135472 AACTATAACA-TCAAATCTTATCTCCATGAAGTTACAATGGA
130 AACTACAA-AGGCAAATCATATCTCCATAAAGTTGCAATGGA
37135513 TCAAGATGAA
Statistics
Matches: 309, Mismatches: 46, Indels: 10
0.85 0.13 0.03
Matches are distributed among these distances:
186 3 0.01
187 112 0.36
188 149 0.48
189 45 0.15
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.26
Consensus pattern (187 bp):
AATCCTATACCCCTGAAGTTGCAGTGGGTCGGATTGAAGTACCATAGCGAATCTTATCTCCCTAA
AGTTGCAGTGGAGCAAGACGAAGCTACAAATCCTATACCCTTAAAGTTGTAGTGGGTTGAATGAA
ACTACAAAGGCAAATCATATCTCCATAAAGTTGCAATGGAGAAAGACGAAGCTACAA
Found at i:37135447 original size:187 final size:186
Alignment explanation
Indices: 37135040--37135522 Score: 585
Period size: 187 Copynumber: 2.6 Consensus size: 186
37135030 GAAGTTGTAG
* * * *
37135040 TGGAGCAAGACGAAGCTACAAATCCTATACCCCTAAAGTTGCAATGGGTTGGAATAAAACTACAA
1 TGGAGCAAGACGAAGCTACAAATCCTATACCCTTAAAGTTGTAGTGGGTT-GAATGAAACTACAA
* * * * *
37135105 AGGCAAATCATATCTCTC-TAAAGTTGCAGTGGAGAAAGACGAAGCTACAAATCCTATACCCCTG
65 AGGCAAATCTTATCTC-CATGAAGTTGCAATGGAGCAAGATGAAGCTACAAATCCTATACCCCTG
* * * * ** * * * *
37135169 AAGTTGTAGTGGGTCGGATTGAAGTTACCATAGCGAATCTTATCTCCCTAAAGTTGCAG
129 AAGATGCAGTGGATCAGATCAAAG-TACAATAGCAAATCTTATCTCCCTAAAGTTACAA
* *
37135228 TGGAGCAAGACGAAGCTACAAATCCTATACCCTTAAAGTTATAGTAGGTTAGAATGAAACTACAA
1 TGGAGCAAGACGAAGCTACAAATCCTATACCCTTAAAGTTGTAGTGGGTT-GAATGAAACTACAA
* * **
37135293 TGGCAAATCTTATTTCCATGAAGTTGCAATGGAGCAAGATGAAGCTACAAAATCCTATTTCCCTG
65 AGGCAAATCTTATCTCCATGAAGTTGCAATGGAGCAAGATGAAGCTAC-AAATCCTATACCCCTG
*
37135358 AAGATGCAGTGGATCAGATCAAAG-ACAATGGCAAATCTTATCTCCCTAAAGTTACAA
129 AAGATGCAGTGGATCAGATCAAAGTACAATAGCAAATCTTATCTCCCTAAAGTTACAA
* * * *
37135415 TGGAGCAAGATGAAGCTACAAATCATATACCCTTGAAGTTGTAGTGGGTTGAAGTGAAACTATAA
1 TGGAGCAAGACGAAGCTACAAATCCTATACCCTTAAAGTTGTAGTGGGTTGAA-TGAAACTACAA
* * *
37135480 CA-TCAAATCTTATCTCCATGAAGTTACAATGGATCAAGATGAA
65 -AGGCAAATCTTATCTCCATGAAGTTGCAATGGAGCAAGATGAA
37135523 ACTGTGACAC
Statistics
Matches: 253, Mismatches: 38, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
186 3 0.01
187 121 0.48
188 97 0.38
189 32 0.13
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (186 bp):
TGGAGCAAGACGAAGCTACAAATCCTATACCCTTAAAGTTGTAGTGGGTTGAATGAAACTACAAA
GGCAAATCTTATCTCCATGAAGTTGCAATGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAA
GATGCAGTGGATCAGATCAAAGTACAATAGCAAATCTTATCTCCCTAAAGTTACAA
Found at i:37135522 original size:94 final size:93
Alignment explanation
Indices: 37134965--37135518 Score: 506
Period size: 94 Copynumber: 5.9 Consensus size: 93
37134955 TGAAATAGTG
* * ** **
37134965 AATCCTATACCCCTTGAAGTTGCAGTGGGTTGAATTGAAGCTACCATAGTGAATCTTATCTCTTT
1 AATCCTATA-CCCTTGAAGTTGCAGTGGGTTGAA-TGAAACTACAATAGCAAATCTTATCTCCAT
* * *
37135030 GAAGTTGTAGTGGAGCAAGACGAAGCTACA
64 AAAGTTGCAATGGAGCAAGACGAAGCTACA
* * * * *
37135060 AATCCTATACCCCTAAAGTTGCAATGGGTTGGAATAAAACTACAA-AGGCAAATCATATCTCTC-
1 AATCCTATACCCTTGAAGTTGCAGTGGGTT-GAATGAAACTACAATA-GCAAATCTTATCTC-CA
* *
37135123 TAAAGTTGCAGTGGAGAAAGACGAAGCTACA
63 TAAAGTTGCAATGGAGCAAGACGAAGCTACA
* * * * ** * * *
37135154 AATCCTATACCCCTGAAGTTGTAGTGGGTCGGATTGAAGTTACCATAGCGAATCTTATCTCCCTA
1 AATCCTATACCCTTGAAGTTGCAGTGGGT-TGAATGAAACTACAATAGCAAATCTTATCTCCATA
*
37135219 AAGTTGCAGTGGAGCAAGACGAAGCTACA
65 AAGTTGCAATGGAGCAAGACGAAGCTACA
* ** * * * *
37135248 AATCCTATACCCTTAAAGTTATAGTAGGTTAGAATGAAACTACAATGGCAAATCTTATTTCCATG
1 AATCCTATACCCTTGAAGTTGCAGTGGGTT-GAATGAAACTACAATAGCAAATCTTATCTCCATA
*
37135313 AAGTTGCAATGGAGCAAGATGAAGCTACAA
65 AAGTTGCAATGGAGCAAGACGAAGCTAC-A
* * * * * * * *
37135343 AATCCTATTTCCC-TGAAGATGCAGT-GGATCAGATCAAA-GACAATGGCAAATCTTATCTCCCT
1 AATCCTA-TACCCTTGAAGTTGCAGTGGGTTGA-ATGAAACTACAATAGCAAATCTTATCTCCAT
* *
37135405 AAAGTTACAATGGAGCAAGATGAAGCTACA
64 AAAGTTGCAATGGAGCAAGACGAAGCTACA
* * * * * *
37135435 AATCATATACCCTTGAAGTTGTAGTGGGTTGAAGTGAAACTATAACATCAAATCTTATCTCCATG
1 AATCCTATACCCTTGAAGTTGCAGTGGGTTGAA-TGAAACTACAATAGCAAATCTTATCTCCATA
* *
37135500 AAGTTACAATGGATCAAGA
65 AAGTTGCAATGGAGCAAGA
37135519 TGAAACTGTG
Statistics
Matches: 376, Mismatches: 69, Indels: 29
0.79 0.15 0.06
Matches are distributed among these distances:
91 4 0.01
92 18 0.05
93 59 0.16
94 262 0.70
95 29 0.08
96 4 0.01
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.26
Consensus pattern (93 bp):
AATCCTATACCCTTGAAGTTGCAGTGGGTTGAATGAAACTACAATAGCAAATCTTATCTCCATAA
AGTTGCAATGGAGCAAGACGAAGCTACA
Found at i:37141194 original size:54 final size:54
Alignment explanation
Indices: 37141127--37141244 Score: 202
Period size: 54 Copynumber: 2.2 Consensus size: 54
37141117 ATCAAAAGAA
*
37141127 TAAATC-ATTAGCTCTTATAAGCATCTGTGGCCATTAAGTCTACGTAAACCAAT
1 TAAATCGAATAGCTCTTATAAGCATCTGTGGCCATTAAGTCTACGTAAACCAAT
*
37141180 TAAATCGAATAGCTCTTATAAGCATGTGTGGCCATTAAGTCTACGTAAACCAAT
1 TAAATCGAATAGCTCTTATAAGCATCTGTGGCCATTAAGTCTACGTAAACCAAT
*
37141234 TAAATTGAATA
1 TAAATCGAATA
37141245 AAATATCCAA
Statistics
Matches: 61, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
53 6 0.10
54 55 0.90
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.31
Consensus pattern (54 bp):
TAAATCGAATAGCTCTTATAAGCATCTGTGGCCATTAAGTCTACGTAAACCAAT
Found at i:37143695 original size:23 final size:23
Alignment explanation
Indices: 37143664--37143714 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
37143654 ACCTACTTTC
* * *
37143664 TTACTGTAGTAATTTTTGGGGTA
1 TTACAGTAGTAATTTTCGGGATA
37143687 TTACAGTAGTAATTTTCGGGATA
1 TTACAGTAGTAATTTTCGGGATA
37143710 TTACA
1 TTACA
37143715 ACTATACTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.27, C:0.08, G:0.22, T:0.43
Consensus pattern (23 bp):
TTACAGTAGTAATTTTCGGGATA
Found at i:37149673 original size:3 final size:3
Alignment explanation
Indices: 37149667--37149698 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
37149657 TGGTGGTTTT
37149667 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
37149699 TTATTATTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:37149703 original size:3 final size:3
Alignment explanation
Indices: 37149697--37149727 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
37149687 ATAATAATAA
37149697 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
37149728 GTGATCTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:37151437 original size:42 final size:42
Alignment explanation
Indices: 37151339--37151502 Score: 211
Period size: 43 Copynumber: 3.9 Consensus size: 42
37151329 TTTTAGAAAT
* *
37151339 AAACGCCGCTATAGATCATGACCTTTAGCGGCGCTTTCCCCAC
1 AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTT-TCCAC
* * *
37151382 AAACGCCGCTATAGGTTAGGACCTTTAGCGTCGCTTTTCCAC
1 AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCCAC
* *
37151424 AAACGCCGCTATAGATCAAGACCTTTAGCGGCACTTTTCCCAC
1 AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTT-CCAC
* * * *
37151467 AAACACCGCTAAAGATCAGGACCTTTACCGACGCTT
1 AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTT
37151503 CTCGCAATAA
Statistics
Matches: 104, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
42 37 0.36
43 67 0.64
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (42 bp):
AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCCAC
Found at i:37151488 original size:85 final size:85
Alignment explanation
Indices: 37151339--37151502 Score: 247
Period size: 85 Copynumber: 1.9 Consensus size: 85
37151329 TTTTAGAAAT
* * * * * *
37151339 AAACGCCGCTATAGATCATGACCTTTAGCGGCGCTTTCCCCACAAACGCCGCTATAGGTTAGGAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCACTTTCCCCACAAACACCGCTAAAGATCAGGAC
* *
37151404 CTTTAGCGTCGCTTTTCCAC
66 CTTTACCGACGCTTTTCCAC
*
37151424 AAACGCCGCTATAGATCAAGACCTTTAGCGGCACTTTTCCCACAAACACCGCTAAAGATCAGGAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCACTTTCCCCACAAACACCGCTAAAGATCAGGAC
37151489 CTTTACCGACGCTT
66 CTTTACCGACGCTT
37151503 CTCGCAATAA
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
85 70 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (85 bp):
AAACGCCGCTATAGATCAAGACCTTTAGCGGCACTTTCCCCACAAACACCGCTAAAGATCAGGAC
CTTTACCGACGCTTTTCCAC
Found at i:37151743 original size:43 final size:43
Alignment explanation
Indices: 37151681--37151855 Score: 208
Period size: 43 Copynumber: 4.1 Consensus size: 43
37151671 AATAAACACT
* * *
37151681 GCTATAGATCATGATCTTTAGCGACGCTTTCCCCACAAACGCC
1 GCTATAGATCAGGACCTTTAGCGACGCTTTTCCCACAAACGCC
* * * * * *
37151724 GCTATAGGTTAGGAACTTTAGCGACGCTTTT-TCATAAACGCT
1 GCTATAGATCAGGACCTTTAGCGACGCTTTTCCCACAAACGCC
*
37151766 GCTATAGATCAGGACCTTTAGCGACACTTTTCCCACAAACGCC
1 GCTATAGATCAGGACCTTTAGCGACGCTTTTCCCACAAACGCC
* * * * *
37151809 GTTAAAGATCAGGACCTTTAGCGATGCTTTTCGCAAAAACGCC
1 GCTATAGATCAGGACCTTTAGCGACGCTTTTCCCACAAACGCC
37151852 GCTA
1 GCTA
37151856 AAAACATAAC
Statistics
Matches: 109, Mismatches: 22, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
42 35 0.32
43 74 0.68
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (43 bp):
GCTATAGATCAGGACCTTTAGCGACGCTTTTCCCACAAACGCC
Found at i:37151828 original size:85 final size:85
Alignment explanation
Indices: 37151672--37151839 Score: 237
Period size: 85 Copynumber: 2.0 Consensus size: 85
37151662 GTTTTTAGAA
* * * * * *
37151672 ATAAACACTGCTATAGATCATGATCTTTAGCGACGCTTTCCCCACAAACGCCGCTATAGGTTAGG
1 ATAAACACTGCTATAGATCAGGACCTTTAGCGACACTTTCCCCACAAACGCCGCTAAAGATCAGG
37151737 AACTTTAGCGACGCTTTTTC
66 AACTTTAGCGACGCTTTTTC
* * *
37151757 ATAAACGCTGCTATAGATCAGGACCTTTAGCGACACTTTTCCCACAAACGCCGTTAAAGATCAGG
1 ATAAACACTGCTATAGATCAGGACCTTTAGCGACACTTTCCCCACAAACGCCGCTAAAGATCAGG
* *
37151822 ACCTTTAGCGATGCTTTT
66 AACTTTAGCGACGCTTTT
37151840 CGCAAAAACG
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
85 72 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.29
Consensus pattern (85 bp):
ATAAACACTGCTATAGATCAGGACCTTTAGCGACACTTTCCCCACAAACGCCGCTAAAGATCAGG
AACTTTAGCGACGCTTTTTC
Found at i:37156517 original size:13 final size:14
Alignment explanation
Indices: 37156493--37156522 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
37156483 CCCTAACTCT
37156493 TAATCTCTAACCCC
1 TAATCTCTAACCCC
37156507 TAATC-CTAACCCC
1 TAATCTCTAACCCC
37156520 TAA
1 TAA
37156523 CCCTTAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.33, C:0.40, G:0.00, T:0.27
Consensus pattern (14 bp):
TAATCTCTAACCCC
Found at i:37156568 original size:14 final size:15
Alignment explanation
Indices: 37156549--37156581 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
37156539 CTTAAACCAG
37156549 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
37156563 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
37156578 AATC
1 AATC
37156582 TATAAACCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.30
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:37156961 original size:13 final size:13
Alignment explanation
Indices: 37156929--37157002 Score: 71
Period size: 13 Copynumber: 5.7 Consensus size: 13
37156919 ATTAACTTTT
*
37156929 AATTAAAATAAATG
1 AATT-AAATAAATA
* *
37156943 AATTAATTACATA
1 AATTAAATAAATA
37156956 AATTAAATAGAA-A
1 AATTAAATA-AATA
37156969 AATTAAATAAATA
1 AATTAAATAAATA
* *
37156982 AA-CAATTAAATA
1 AATTAAATAAATA
37156994 AATTAAATA
1 AATTAAATA
37157003 GACAATTTAT
Statistics
Matches: 48, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
12 12 0.25
13 31 0.65
14 5 0.10
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.30
Consensus pattern (13 bp):
AATTAAATAAATA
Found at i:37156989 original size:38 final size:40
Alignment explanation
Indices: 37156929--37157004 Score: 111
Period size: 38 Copynumber: 1.9 Consensus size: 40
37156919 ATTAACTTTT
** *
37156929 AATTAAAATAAATGAATTAATTACATAAATTAAATAGAAA
1 AATTAAAATAAATGAAACAATTAAATAAATTAAATAGAAA
37156969 AATT-AAATAAAT-AAACAATTAAATAAATTAAATAGA
1 AATTAAAATAAATGAAACAATTAAATAAATTAAATAGA
37157005 CAATTTATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
38 21 0.64
39 8 0.24
40 4 0.12
ACGTcount: A:0.64, C:0.03, G:0.04, T:0.29
Consensus pattern (40 bp):
AATTAAAATAAATGAAACAATTAAATAAATTAAATAGAAA
Found at i:37156990 original size:16 final size:17
Alignment explanation
Indices: 37156954--37156996 Score: 61
Period size: 16 Copynumber: 2.5 Consensus size: 17
37156944 ATTAATTACA
37156954 TAAATTAAATAGAAAAAT
1 TAAA-TAAATAGAAAAAT
*
37156972 TAAATAAATA-AACAAT
1 TAAATAAATAGAAAAAT
37156988 TAAATAAAT
1 TAAATAAAT
37156997 TAAATAGACA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 14 0.58
17 6 0.25
18 4 0.17
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (17 bp):
TAAATAAATAGAAAAAT
Found at i:37156992 original size:21 final size:21
Alignment explanation
Indices: 37156947--37157009 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 21
37156937 TAAATGAATT
* *
37156947 AATTACATAAATTAAATAGA-
1 AATTAAATAAATTAAATAAAC
*
37156967 AA--AATTAAA-TAAATAAAC
1 AATTAAATAAATTAAATAAAC
*
37156985 AATTAAATAAATTAAATAGAC
1 AATTAAATAAATTAAATAAAC
37157006 AATT
1 AATT
37157010 TATTAAAAAC
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
17 7 0.21
18 7 0.21
20 8 0.24
21 12 0.35
ACGTcount: A:0.63, C:0.05, G:0.03, T:0.29
Consensus pattern (21 bp):
AATTAAATAAATTAAATAAAC
Found at i:37157016 original size:21 final size:21
Alignment explanation
Indices: 37156954--37157016 Score: 71
Period size: 21 Copynumber: 3.2 Consensus size: 21
37156944 ATTAATTACA
37156954 TAAATTAAATAGA-AA--AAT
1 TAAATTAAATAGACAATTAAT
* *
37156972 TAAA-TAAATAAACAATTAAA
1 TAAATTAAATAGACAATTAAT
*
37156992 TAAATTAAATAGACAATTTAT
1 TAAATTAAATAGACAATTAAT
37157013 TAAA
1 TAAA
37157017 AACGCCGCTA
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
17 7 0.19
18 6 0.17
20 6 0.17
21 17 0.47
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.30
Consensus pattern (21 bp):
TAAATTAAATAGACAATTAAT
Found at i:37157320 original size:114 final size:114
Alignment explanation
Indices: 37157012--37157756 Score: 1102
Period size: 114 Copynumber: 6.5 Consensus size: 114
37157002 AGACAATTTA
* *
37157012 TTAAAAACGCCGCTAAGTCCCCGAAAACTCAGAAAACGGCGT--TTGGGCTTAGGTTTATTTTGC
1 TTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTT-TTTTGC
* * * * * *
37157075 GGCGCTTTCTTAAAAACACCGCTAAAGTCCTGAACATTAGTGGCCCTTTC
65 GGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTC
* * * *
37157125 TTAAAAACGCCACTAAATCCCCCAAAAGCTCAGAAAACGACGTCGTTGGGCTTAGATTTTTTTGC
1 TTAAAAACGCCGCTAAAT-CCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGC
* *
37157190 GGCGCTTTCCCAAAAACGCCGCTAAAGCCCT-ACGCATTAGCGGCACTTTC
65 GGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGA-GCATTAGCGGCGCTTTC
* *
37157240 TTAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCA
1 TTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCG
*
37157305 GCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGTGCTTTC
66 GCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTC
* * *
37157354 TTAAAAACGCCGCTAAATCCCCGAAAACTTAGAAAACGACGTCGTTGGGCTTAGGTTTTTTTGCG
1 TTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCG
* * *
37157419 GCGCTTTCCCAAAAACGTCGCTAAAGCCCTGAGCATTAGCGCCGCTTTC
66 GCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTC
* * * *
37157468 TTAAAAACGCCGCTAAATCCCC-AAAGCTCAAAAAACGGCATCATTGGGCTTAGTTTTTTTTTGC
1 TTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAG-GTTTTTTTGC
* *
37157532 GGCGCTTTCTCAAAAACACTGCTAAAGCCCTGAGCATTAGCGGCGCTTTC
65 GGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTC
**
37157582 TTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAATAGCGTCGTTGGGCTTAGGTTTTTTTGCG
1 TTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCG
* **
37157647 GCGCTTTCTCAAAAACGCCACTAAAGCCCTGAGCATTAGCGATGCTTTC
66 GCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTC
* *
37157696 TTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGACGTCATTGGGCTTAGGTTTTTT
1 TTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTT
37157757 ACGACGCTTT
Statistics
Matches: 567, Mismatches: 58, Indels: 13
0.89 0.09 0.02
Matches are distributed among these distances:
113 41 0.07
114 422 0.74
115 91 0.16
116 13 0.02
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (114 bp):
TTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCG
GCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTC
Found at i:37166087 original size:3 final size:3
Alignment explanation
Indices: 37166081--37166126 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
37166071 AATAATAATA
37166081 AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT A
1 AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT A
37166127 TAGAGGCACT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.35, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
AGT
Found at i:37166646 original size:8 final size:8
Alignment explanation
Indices: 37166633--37166659 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
37166623 GCAATTTTTA
37166633 CATTCATG
1 CATTCATG
37166641 CATTCATG
1 CATTCATG
37166649 CATTCATG
1 CATTCATG
37166657 CAT
1 CAT
37166660 ATTTTGCTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.37
Consensus pattern (8 bp):
CATTCATG
Found at i:37171038 original size:21 final size:21
Alignment explanation
Indices: 37171014--37171054 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
37171004 TCAAATTAGT
*
37171014 ATTTTTTTTCCTTTTTTATTA
1 ATTTTTTTTCATTTTTTATTA
*
37171035 ATTTTTTTTTATTTTTTATT
1 ATTTTTTTTCATTTTTTATT
37171055 TTTCATATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.80
Consensus pattern (21 bp):
ATTTTTTTTCATTTTTTATTA
Found at i:37171163 original size:21 final size:19
Alignment explanation
Indices: 37171137--37171184 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 19
37171127 GCATATTTAT
37171137 TTTTTTAATATAATATAATTA
1 TTTTTT-ATAT-ATATAATTA
*
37171158 TTTTTT-TATATGTAATTA
1 TTTTTTATATATATAATTA
37171176 TTTTTTATA
1 TTTTTTATA
37171185 ATCTATACAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 14 0.56
19 5 0.20
21 6 0.24
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (19 bp):
TTTTTTATATATATAATTA
Found at i:37183311 original size:45 final size:45
Alignment explanation
Indices: 37183202--37183753 Score: 248
Period size: 44 Copynumber: 12.7 Consensus size: 45
37183192 TCTCATCTAG
* *
37183202 TCTTATCTCCCTGAAGTTGCAG-GGGAGCAGACTAAGTAGGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGAGAGCAGACTAAGTAGGCAAA
*
37183246 TCTTATC-CTCCTAAAGTTGCAGTGAG-GCAGACTGAAG-ATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGAGAGCAGACT-AAGTA-GGCAAA
* ** *
37183291 TCTTATCTCCCTGAATTTGCAGTG-GAGCAGGTTAA--AGCCAATAA
1 TCTTATCTCCCTGAAGTTGCAGTGAGAGCAGACTAAGTAGGC-A-AA
* * * *
37183335 TCCTATCTCCCTGAAGTTGCAGTG-GAGCAGATTAA-AACCTGG--GA
1 TCTTATCTCCCTGAAGTTGCAGTGAGAGCAGACTAAGTA---GGCAAA
* * * * * *
37183379 TCTTATCTCTCTGAAGTTGCA--GAGAGCA-AAT-CGCA-TC-TA
1 TCTTATCTCCCTGAAGTTGCAGTGAGAGCAGACTAAGTAGGCAAA
* * *
37183418 TCTTATCTCCCTGAAGTTGCAGTG-GAGTAGACTAAGTAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGAGAGCAGACTAAGTAGGCAAA
* *
37183462 TCTTATC-CTCCTGAAGTTGCAGTGAG-GCAGACTGA-TGACGGAAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGAGAGCAGACTAAGT-A-GGCAAA
* ** *
37183507 TCTTATCTCCCTGAAGTTACAGTG-GAGCAGGTTAA--AGCCGATAA
1 TCTTATCTCCCTGAAGTTGCAGTGAGAGCAGACTAAGTAGGC-A-AA
* * * * *
37183551 TCCTATCTCCCTGAAGTTGCCGTG-GAAC-GAATTAAAACCTAGG---A
1 TCTTATCTCCCTGAAGTTGCAGTGAGAGCAG-ACT--AA-GTAGGCAAA
* * * * * *
37183595 TCTTATCTCTCTGAAGTTGCA--GAGAGCAGA-TCA-CA-CCTAG
1 TCTTATCTCCCTGAAGTTGCAGTGAGAGCAGACTAAGTAGGCAAA
* * *
37183635 TCTTATCTCCCTGAAATTGCAGTG-GAGCAGACTAAGTAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGAGAGCAGACTAAGTAGGCAAA
* * *
37183679 TCTTCTC-CTCCTGAAGTTGTAATGAG-GCAGACTCAAG-ATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGAGAGCAGACT-AAGTA-GGCAAA
*
37183724 TCTTATCTCCCTGAAGTTACA--GAGAGCAGA
1 TCTTATCTCCCTGAAGTTGCAGTGAGAGCAGA
37183754 TCCCATCTAA
Statistics
Matches: 389, Mismatches: 68, Indels: 102
0.70 0.12 0.18
Matches are distributed among these distances:
38 1 0.00
39 21 0.05
40 24 0.06
41 10 0.03
42 14 0.04
43 23 0.06
44 197 0.51
45 91 0.23
46 5 0.01
48 1 0.00
49 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (45 bp):
TCTTATCTCCCTGAAGTTGCAGTGAGAGCAGACTAAGTAGGCAAA
Found at i:37183510 original size:216 final size:217
Alignment explanation
Indices: 37183110--37183745 Score: 1033
Period size: 216 Copynumber: 2.9 Consensus size: 217
37183100 CAGATCCATG
* *
37183110 GCCAATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGAATTAAAACATTGGATCTTATCTCTCTG
1 GCCAATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGAATTAAAACCTAGGATCTTATCTCTCTG
* *
37183175 AAGTTGCAGAGAGCAGATCTCATCTAGTCTTATCTCCCTGAAGTTGCAGGGGAGCAGACTAAGTA
66 AAGTTGCAGAGAGCAGATCACATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTA
* *
37183240 GGCAAGTCTTATCCTCCTAAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGA
131 AGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGA
* *
37183305 ATTTGCAGTGGAGCAGGTTAAA
196 AGTTACAGTGGAGCAGGTTAAA
*
37183327 GCCAATAATCCTATCTCCCTGAAGTTGCAGTGGAGC-AGATTAAAACCTGGGATCTTATCTCTCT
1 GCCAATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGA-ATTAAAACCTAGGATCTTATCTCTCT
* * *
37183391 GAAGTTGCAGAGAGCAAATCGCATCTA-TCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAGT
65 GAAGTTGCAGAGAGCAGATCACATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGT
* * *
37183455 AAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGATGACGGAAAATCTTATCTCCCTG
130 AAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTG
37183520 AAGTTACAGTGGAGCAGGTTAAA
195 AAGTTACAGTGGAGCAGGTTAAA
* * *
37183543 GCCGATAATCCTATCTCCCTGAAGTTGCCGTGGAACGAATTAAAACCTAGGATCTTATCTCTCTG
1 GCCAATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGAATTAAAACCTAGGATCTTATCTCTCTG
* *
37183608 AAGTTGCAGAGAGCAGATCACACCTAGTCTTATCTCCCTGAAATTGCAGTGGAGCAGACTAAGTA
66 AAGTTGCAGAGAGCAGATCACATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTA
* * * *
37183673 AGCAAGTCTTCTCCTCCTGAAGTTGTAATGAGGCAGACTCAAGATGGCAAATCTTATCTCCCTGA
131 AGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGA
37183738 AGTTACAG
196 AGTTACAG
37183746 AGAGCAGATC
Statistics
Matches: 387, Mismatches: 29, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
216 199 0.51
217 188 0.49
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (217 bp):
GCCAATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGAATTAAAACCTAGGATCTTATCTCTCTG
AAGTTGCAGAGAGCAGATCACATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTA
AGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGA
AGTTACAGTGGAGCAGGTTAAA
Found at i:37185100 original size:16 final size:16
Alignment explanation
Indices: 37185081--37185134 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 16
37185071 TTTGTTTTCC
37185081 TTTTTTATTAATTATT
1 TTTTTTATTAATTATT
**
37185097 TTTTTTATTTTTTATT
1 TTTTTTATTAATTATT
**
37185113 TTTCATATTTAATTATT
1 TTTTTTA-TTAATTATT
37185130 TTTTT
1 TTTTT
37185135 AAATCTATGT
Statistics
Matches: 29, Mismatches: 8, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
16 19 0.66
17 10 0.34
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTTTATTAATTATT
Found at i:37185107 original size:29 final size:32
Alignment explanation
Indices: 37185059--37185134 Score: 86
Period size: 30 Copynumber: 2.4 Consensus size: 32
37185049 TTACAGTTCA
*
37185059 AATTAGTTTTTTTT-TGTTTTCCTTTTT-TA-TT
1 AATTA-TTTTTTTTAT-TTTTCATTTTTATATTT
*
37185090 AATTATTTTTTTTATTTTTTATTTTTCATATTT
1 AATTATTTTTTTTATTTTTCATTTTT-ATATTT
37185123 AATTATTTTTTT
1 AATTATTTTTTT
37185135 AAATCTATGT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
30 17 0.44
31 6 0.15
32 2 0.05
33 14 0.36
ACGTcount: A:0.18, C:0.04, G:0.03, T:0.75
Consensus pattern (32 bp):
AATTATTTTTTTTATTTTTCATTTTTATATTT
Found at i:37185219 original size:22 final size:21
Alignment explanation
Indices: 37185193--37185290 Score: 69
Period size: 22 Copynumber: 4.6 Consensus size: 21
37185183 ATACGCATAT
37185193 TTATTTTTTTAATATAATGTAA
1 TTATTTTTTTAATAT-ATGTAA
37185215 TTA-TTTTTT--TATATGTAA
1 TTATTTTTTTAATATATGTAA
* **
37185233 TTATTTTTTATAATCTATACATA
1 TTATTTTTT-TAATATATGTA-A
*
37185256 TATATTTATTTTTATATATGT-A
1 T-TATTT-TTTTAATATATGTAA
*
37185278 TTAATATTTTTAA
1 TT-ATTTTTTTAA
37185291 CCAATTTTAT
Statistics
Matches: 59, Mismatches: 9, Indels: 17
0.69 0.11 0.20
Matches are distributed among these distances:
18 9 0.15
19 8 0.14
20 1 0.02
21 12 0.20
22 13 0.22
23 2 0.03
24 11 0.19
25 3 0.05
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (21 bp):
TTATTTTTTTAATATATGTAA
Found at i:37185223 original size:21 final size:19
Alignment explanation
Indices: 37185197--37185244 Score: 71
Period size: 18 Copynumber: 2.5 Consensus size: 19
37185187 GCATATTTAT
37185197 TTTTTTAATATAATGTAATTA
1 TTTTTT-ATAT-ATGTAATTA
37185218 TTTTTT-TATATGTAATTA
1 TTTTTTATATATGTAATTA
37185236 TTTTTTATA
1 TTTTTTATA
37185245 ATCTATACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 15 0.58
19 5 0.19
21 6 0.23
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (19 bp):
TTTTTTATATATGTAATTA
Found at i:37199395 original size:31 final size:31
Alignment explanation
Indices: 37199343--37199401 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
37199333 TGGGCACTTC
37199343 CGTTACATACTTTTATCATTTTAGTCACTGT
1 CGTTACATACTTTTATCATTTTAGTCACTGT
* * *
37199374 CGTTGCATTCTTTTATTATTTTAGTCAC
1 CGTTACATACTTTTATCATTTTAGTCAC
37199402 CCACCGTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.20, C:0.19, G:0.10, T:0.51
Consensus pattern (31 bp):
CGTTACATACTTTTATCATTTTAGTCACTGT
Found at i:37199687 original size:20 final size:20
Alignment explanation
Indices: 37199631--37199688 Score: 62
Period size: 22 Copynumber: 2.8 Consensus size: 20
37199621 AAGAGAAGCA
*
37199631 AAAACTTGAGGTTTTATAGG
1 AAAACTTGAGTTTTTATAGG
** *
37199651 AAATTAAGTGGGTTTTTATAGG
1 AAA--ACTTGAGTTTTTATAGG
37199673 AAAACTTGAGTTTTTA
1 AAAACTTGAGTTTTTA
37199689 CAAGAAAAAT
Statistics
Matches: 29, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
20 13 0.45
22 16 0.55
ACGTcount: A:0.34, C:0.03, G:0.22, T:0.40
Consensus pattern (20 bp):
AAAACTTGAGTTTTTATAGG
Found at i:37199838 original size:23 final size:25
Alignment explanation
Indices: 37199808--37199853 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
37199798 ATAGGGGAAA
37199808 TTCA-TTTTATCTTTT-TAATTTCC
1 TTCATTTTTATCTTTTCTAATTTCC
*
37199831 TTCATTTTTTTCTTTTCTAATTT
1 TTCATTTTTATCTTTTCTAATTT
37199854 TAGCTTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 4 0.20
24 10 0.50
25 6 0.30
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.70
Consensus pattern (25 bp):
TTCATTTTTATCTTTTCTAATTTCC
Found at i:37201690 original size:18 final size:17
Alignment explanation
Indices: 37201667--37201702 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
37201657 ACAATTGTAA
37201667 AGCAACATGAAAAGACAG
1 AGCAACATGAAAA-ACAG
*
37201685 AGCAACATTAAAAACAG
1 AGCAACATGAAAAACAG
37201702 A
1 A
37201703 CGCCTAACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.58, C:0.17, G:0.17, T:0.08
Consensus pattern (17 bp):
AGCAACATGAAAAACAG
Found at i:37202302 original size:14 final size:15
Alignment explanation
Indices: 37202280--37202356 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
37202270 CAATCAAACA
37202280 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
37202294 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
37202309 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
37202329 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
37202343 ACGGAAAAT-ATTTT
1 CCAGAAAATCATTTT
37202357 ACTGGCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 21 0.42
15 15 0.30
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:37202321 original size:20 final size:20
Alignment explanation
Indices: 37202296--37202335 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
37202286 AATATTTTCC
*
37202296 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
37202316 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
37202336 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:37202341 original size:34 final size:35
Alignment explanation
Indices: 37202284--37202350 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
37202274 CAAACACCAG
*
37202284 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
37202319 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
37202351 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:37212758 original size:51 final size:50
Alignment explanation
Indices: 37212628--37212760 Score: 169
Period size: 50 Copynumber: 2.6 Consensus size: 50
37212618 AAAGTGATGG
*** *
37212628 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAAATGATAGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATACGTACCGAAATGATAGA
* * * *
37212678 TCGCATGTGTAGTACTATGTGCAGGCTACTATACGTACCG-AATAGTTTTGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATACGTACCGAAAT-G-ATAGA
37212729 TCACGTGTGTAGTACTATGTGCAGGCTACTAT
1 TCACGTGTGTAGTACTATGTGCAGGCTACTAT
37212761 GTGAACCGAA
Statistics
Matches: 71, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
49 3 0.04
50 36 0.51
51 32 0.45
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.32
Consensus pattern (50 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTATACGTACCGAAATGATAGA
Found at i:37212769 original size:51 final size:50
Alignment explanation
Indices: 37212628--37212770 Score: 180
Period size: 51 Copynumber: 2.8 Consensus size: 50
37212618 AAAGTGATGG
* *
37212628 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAAATGATAGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAAATGATAGA
* * ** * *
37212678 TCGCATGTGTAGTACTATGTGCAGGCTACTATACGTACCG-AATAGTTTTGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAAAT-G-ATAGA
*
37212729 TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGAACCGAA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAA
37212771 CATCATTTAT
Statistics
Matches: 77, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
49 3 0.04
50 36 0.47
51 37 0.48
52 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAAATGATAGA
Found at i:37212839 original size:45 final size:45
Alignment explanation
Indices: 37212770--37212856 Score: 122
Period size: 45 Copynumber: 1.9 Consensus size: 45
37212760 TGTGAACCGA
* * *
37212770 ACATCATTTATTAGTAAGGTGGTTGCTATGTGCT-AATTCCACTAG
1 ACATCATTGATTAATAAGGCGGTTGCTATGTGCTGAA-TCCACTAG
*
37212815 ACATTATTGATTAATAAGGCGGTTGCTATGTGCTGAATCCAC
1 ACATCATTGATTAATAAGGCGGTTGCTATGTGCTGAATCCAC
37212857 CGAGTATCTG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
45 35 0.95
46 2 0.05
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.36
Consensus pattern (45 bp):
ACATCATTGATTAATAAGGCGGTTGCTATGTGCTGAATCCACTAG
Found at i:37214409 original size:21 final size:20
Alignment explanation
Indices: 37214360--37214416 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 20
37214350 ATTAAATGGA
37214360 AATTGCAAATGATATTATTTG
1 AATTG-AAATGATATTATTTG
37214381 AATT-AAATGA-ATTATTGTGG
1 AATTGAAATGATATTATT-T-G
*
37214401 TATTGAAATGTATATT
1 AATTGAAATG-ATATT
37214417 GGATTGAGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
18 6 0.20
19 7 0.23
20 4 0.13
21 9 0.30
22 1 0.03
23 3 0.10
ACGTcount: A:0.39, C:0.02, G:0.16, T:0.44
Consensus pattern (20 bp):
AATTGAAATGATATTATTTG
Found at i:37220333 original size:51 final size:51
Alignment explanation
Indices: 37220196--37220490 Score: 323
Period size: 51 Copynumber: 5.8 Consensus size: 51
37220186 ACTTTTATCA
* *
37220196 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AAG-TT
1 TTCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
*
37220245 TTACGGTTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
1 TT-CGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
* * * *
37220297 TTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACC--ATCATT
1 TTCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGC-TT
* * *
37220347 TATCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTT
1 T-TCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
* * * * * *
37220399 CTCGGTACACATTGTAGCCTTCACTTAGTACTACACATGTGACC--ATCATT
1 TTCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGC-TT
* * * *
37220449 TATCGATACACGTAGTAGCTTTCACACAATACTACACACGTG
1 T-TCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTG
37220491 TTCATCGATA
Statistics
Matches: 204, Mismatches: 33, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
49 6 0.03
50 44 0.22
51 146 0.72
52 6 0.03
53 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.28
Consensus pattern (51 bp):
TTCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
Found at i:37220383 original size:102 final size:102
Alignment explanation
Indices: 37220196--37220490 Score: 448
Period size: 102 Copynumber: 2.9 Consensus size: 102
37220186 ACTTTTATCA
* * * * * *** *
37220196 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTA-CGGTTCACGTAG
1 TTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAG
*
37220260 TAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
66 TAGCCTTCACACAGTACTACACACGTGACCAAAGCTT
37220297 TTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAG
1 TTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAG
37220362 TAGCCTTCACACAGTACTACACACGTGACCAAAGCTT
66 TAGCCTTCACACAGTACTACACACGTGACCAAAGCTT
* * *
37220399 CTCGGTACACATTGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATACACGTAG
1 TTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAG
* *
37220464 TAGCTTTCACACAATACTACACACGTG
66 TAGCCTTCACACAGTACTACACACGTG
37220491 TTCATCGATA
Statistics
Matches: 178, Mismatches: 15, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
101 44 0.25
102 134 0.75
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.28
Consensus pattern (102 bp):
TTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAG
TAGCCTTCACACAGTACTACACACGTGACCAAAGCTT
Found at i:37220482 original size:153 final size:151
Alignment explanation
Indices: 37220197--37220486 Score: 377
Period size: 153 Copynumber: 1.9 Consensus size: 151
37220187 CTTTTATCAT
* * * * *
37220197 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACGGTTCACGTAGTA
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAGTTCTACGGTACACATAGTA
* ** *
37220262 GCCTTCACATAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGTAGCCTTCACTTAGTA
66 GCCTTCACATAGTACTACACACGTGACCAAA-CTTTTCGATACACATAGTAGCCTTCACACAATA
37220327 CTACACATGTGACCATCATTTA
130 CTACACATGTGACCATCATTTA
* *
37220349 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCT-CGGTACACATTG
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACC-AAG-TTCTACGGTACACATAG
* * * * *
37220413 TAGCCTTCACTTAGTACTACACATGTGACC-ATCATTTATCGATACACGTAGTAGCTTTCACACA
64 TAGCCTTCACATAGTACTACACACGTGACCAAAC-TTT-TCGATACACATAGTAGCCTTCACACA
37220477 ATACTACACA
127 ATACTACACA
37220487 CGTGTTCATC
Statistics
Matches: 118, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
151 1 0.01
152 44 0.37
153 70 0.59
154 3 0.03
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (151 bp):
TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAGTTCTACGGTACACATAGTA
GCCTTCACATAGTACTACACACGTGACCAAACTTTTCGATACACATAGTAGCCTTCACACAATAC
TACACATGTGACCATCATTTA
Found at i:37221880 original size:11 final size:11
Alignment explanation
Indices: 37221864--37221894 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
37221854 TATATATATT
37221864 TAAAAATTATA
1 TAAAAATTATA
*
37221875 TAAAAATAATA
1 TAAAAATTATA
37221886 TAAAAATTA
1 TAAAAATTA
37221895 ATACGGACAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
TAAAAATTATA
Found at i:37222593 original size:55 final size:54
Alignment explanation
Indices: 37222503--37222610 Score: 198
Period size: 55 Copynumber: 2.0 Consensus size: 54
37222493 AGAAAAACTG
37222503 TAATGTAAGCATGATCATTATTTGGTTCTTTTGTAATCTCATATTACTATTGTA
1 TAATGTAAGCATGATCATTATTTGGTTCTTTTGTAATCTCATATTACTATTGTA
*
37222557 TAATGTAAGCATGATCATTTATTTGGTTCTTTTGTAATCTCGTATTACTATTGT
1 TAATGTAAGCATGATCA-TTATTTGGTTCTTTTGTAATCTCATATTACTATTGT
37222611 GTATATATAT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
54 17 0.33
55 35 0.67
ACGTcount: A:0.26, C:0.11, G:0.14, T:0.49
Consensus pattern (54 bp):
TAATGTAAGCATGATCATTATTTGGTTCTTTTGTAATCTCATATTACTATTGTA
Found at i:37235877 original size:50 final size:51
Alignment explanation
Indices: 37235803--37235921 Score: 143
Period size: 51 Copynumber: 2.4 Consensus size: 51
37235793 GTCAGTGTAG
*** * *
37235803 CTATGTGCAGGCTACTACGTGTACCGAA-A-TGATAGGTCGCATGTGTAGTA
1 CTATGTGCAGGCTACTATACGTACCGAATAGT-ATAGATCACATGTGTAGTA
* * *
37235853 CTATGTGCAGGCTACTATACGTACCGAATAGTTTTGATCACGTGTGTAGTA
1 CTATGTGCAGGCTACTATACGTACCGAATAGTATAGATCACATGTGTAGTA
37235904 CTATGTGCAGGCTACTAT
1 CTATGTGCAGGCTACTAT
37235922 GTAACCGAAC
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
50 25 0.42
51 33 0.56
52 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (51 bp):
CTATGTGCAGGCTACTATACGTACCGAATAGTATAGATCACATGTGTAGTA
Found at i:37235999 original size:45 final size:45
Alignment explanation
Indices: 37235930--37236016 Score: 122
Period size: 45 Copynumber: 1.9 Consensus size: 45
37235920 ATGTAACCGA
* * *
37235930 ACATCATTTATTAGTAAGGTGGTTGCTATGTGCT-AATTCCACTAG
1 ACATCATTGATTAATAAGGCGGTTGCTATGTGCTGAA-TCCACTAG
*
37235975 ACATTATTGATTAATAAGGCGGTTGCTATGTGCTGAATCCAC
1 ACATCATTGATTAATAAGGCGGTTGCTATGTGCTGAATCCAC
37236017 CGAGTATCTG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
45 35 0.95
46 2 0.05
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.36
Consensus pattern (45 bp):
ACATCATTGATTAATAAGGCGGTTGCTATGTGCTGAATCCACTAG
Found at i:37237566 original size:21 final size:20
Alignment explanation
Indices: 37237517--37237573 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 20
37237507 ATTAAATGGA
37237517 AATTGCAAATGATATTATTTG
1 AATTG-AAATGATATTATTTG
37237538 AATT-AAATGA-ATTATTGTGG
1 AATTGAAATGATATTATT-T-G
*
37237558 TATTGAAATGTATATT
1 AATTGAAATG-ATATT
37237574 GGATTGAGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
18 6 0.20
19 7 0.23
20 4 0.13
21 9 0.30
22 1 0.03
23 3 0.10
ACGTcount: A:0.39, C:0.02, G:0.16, T:0.44
Consensus pattern (20 bp):
AATTGAAATGATATTATTTG
Found at i:37243476 original size:100 final size:99
Alignment explanation
Indices: 37243312--37243596 Score: 388
Period size: 100 Copynumber: 2.9 Consensus size: 99
37243302 ACTTTTATCA
* * * * *
37243312 TTCGATACACGTAGTAGCCTTCACATATAC-ACACACGTG--ATCAAGTTTA-CGGTTCACGTAG
1 TTCGGTACACATAGTAGCCTTCACTTATACTACACATGTGACATC-A-TTTATCGATTCACGTAG
*
37243373 TAGCCTTCACATAGTACTACACACGTGACC-AAGCT
64 TAGCCTTCACACAGTACTACACACGTGACCAAAGCT
37243408 TTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAG
1 TTCGGTACACATAGTAGCCTTCACTTA-TACTACACATGTGA-CATCATTTATCGATTCACGTAG
37243473 TAGCCTTCACACAGTACTACACACGTGACCAAAGCT
64 TAGCCTTCACACAGTACTACACACGTGACCAAAGCT
*
37243509 TCTC-GTACACAT-GTAGCCTTCACTTATACTACACATGTGACATCA-TTATCGATACACGTAGT
1 T-TCGGTACACATAGTAGCCTTCACTTATACTACACATGTGACATCATTTATCGATTCACGTAGT
* *
37243571 AGCTTTCACACAATACTACACACGTG
65 AGCCTTCACACAGTACTACACACGTG
37243597 TTCATCGATA
Statistics
Matches: 172, Mismatches: 9, Indels: 15
0.88 0.05 0.08
Matches are distributed among these distances:
96 24 0.14
97 43 0.25
98 13 0.08
99 18 0.10
100 55 0.32
101 17 0.10
102 2 0.01
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (99 bp):
TTCGGTACACATAGTAGCCTTCACTTATACTACACATGTGACATCATTTATCGATTCACGTAGTA
GCCTTCACACAGTACTACACACGTGACCAAAGCT
Found at i:37243490 original size:51 final size:50
Alignment explanation
Indices: 37243313--37243596 Score: 291
Period size: 49 Copynumber: 5.8 Consensus size: 50
37243303 CTTTTATCAT
* *
37243313 TCGATACACGTAGTAGCCTTCACATA-TAC-ACACACGTGATCAAGTTTA
1 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGCTTA
* *
37243361 -CGGTTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGCTT-
1 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGCTTA
* * * * *
37243409 TCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCA-TTTA
1 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCA--AGCTTA
* * *
37243460 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTC
1 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACC-AAGCTTA
* * * *
37243511 TCG-TACACAT-GTAGCCTTCACTTA-TACTACACATGTGA-C-ATCATTA
1 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGC-TTA
* * *
37243557 TCGATACACGTAGTAGCTTTCACACAATACTACACACGTG
1 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTG
37243597 TTCATCGATA
Statistics
Matches: 195, Mismatches: 29, Indels: 23
0.79 0.12 0.09
Matches are distributed among these distances:
45 2 0.01
46 5 0.03
47 30 0.15
48 27 0.14
49 79 0.41
50 8 0.04
51 43 0.22
52 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (50 bp):
TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGCTTA
Found at i:37244978 original size:11 final size:11
Alignment explanation
Indices: 37244962--37244992 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
37244952 TATATATATT
37244962 TAAAAATTATA
1 TAAAAATTATA
*
37244973 TAAAAATAATA
1 TAAAAATTATA
37244984 TAAAAATTA
1 TAAAAATTA
37244993 ATACGGACAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
TAAAAATTATA
Found at i:37245652 original size:29 final size:29
Alignment explanation
Indices: 37245620--37245707 Score: 69
Period size: 29 Copynumber: 3.1 Consensus size: 29
37245610 CATGATCATT
37245620 TATTTGGTTCTTTTGTAATCTCATATTAC
1 TATTTGGTTCTTTTGTAATCTCATATTAC
* ** * *
37245649 TA-TT-G-TATAATGTAAGCATGATCATT--
1 TATTTGGTTCTTTTGTAATC-TCAT-ATTAC
*
37245675 TATTTGGTTCTTTTGTAATCTCGTATTAC
1 TATTTGGTTCTTTTGTAATCTCATATTAC
37245704 TATT
1 TATT
37245708 GTGTATATAT
Statistics
Matches: 41, Mismatches: 11, Indels: 14
0.62 0.17 0.21
Matches are distributed among these distances:
26 10 0.24
27 9 0.22
28 8 0.20
29 14 0.34
ACGTcount: A:0.24, C:0.11, G:0.12, T:0.52
Consensus pattern (29 bp):
TATTTGGTTCTTTTGTAATCTCATATTAC
Found at i:37245685 original size:55 final size:55
Alignment explanation
Indices: 37245601--37245709 Score: 209
Period size: 55 Copynumber: 2.0 Consensus size: 55
37245591 AGAAAAACTG
37245601 TAATGTAAGCATGATCATTTATTTGGTTCTTTTGTAATCTCATATTACTATTGTA
1 TAATGTAAGCATGATCATTTATTTGGTTCTTTTGTAATCTCATATTACTATTGTA
*
37245656 TAATGTAAGCATGATCATTTATTTGGTTCTTTTGTAATCTCGTATTACTATTGT
1 TAATGTAAGCATGATCATTTATTTGGTTCTTTTGTAATCTCATATTACTATTGT
37245710 GTATATATAT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.26, C:0.11, G:0.14, T:0.50
Consensus pattern (55 bp):
TAATGTAAGCATGATCATTTATTTGGTTCTTTTGTAATCTCATATTACTATTGTA
Found at i:37250380 original size:13 final size:13
Alignment explanation
Indices: 37250362--37250388 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
37250352 AGTTTGACAA
37250362 TATTTTTGAAAAG
1 TATTTTTGAAAAG
37250375 TATTTTTGAAAAG
1 TATTTTTGAAAAG
37250388 T
1 T
37250389 GCTGTGGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.48
Consensus pattern (13 bp):
TATTTTTGAAAAG
Found at i:37250411 original size:13 final size:13
Alignment explanation
Indices: 37250365--37250411 Score: 58
Period size: 13 Copynumber: 3.6 Consensus size: 13
37250355 TTGACAATAT
**
37250365 TTTTGAAAAGTAT
1 TTTTGAAAAGTGC
37250378 TTTTGAAAAGTGC
1 TTTTGAAAAGTGC
* *
37250391 TGTGGAAAAGTGC
1 TTTTGAAAAGTGC
37250404 TTTTGAAA
1 TTTTGAAA
37250412 GGTTTGGTTT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.34, C:0.04, G:0.23, T:0.38
Consensus pattern (13 bp):
TTTTGAAAAGTGC
Found at i:37258749 original size:18 final size:19
Alignment explanation
Indices: 37258711--37258750 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
37258701 CTATTATAAC
*
37258711 TTTTTACAATTTCCTTAAA
1 TTTTTACAATTTCATTAAA
*
37258730 TTTTTACAATTT-ATTCAA
1 TTTTTACAATTTCATTAAA
37258748 TTT
1 TTT
37258751 AGTCCCTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.30, C:0.12, G:0.00, T:0.57
Consensus pattern (19 bp):
TTTTTACAATTTCATTAAA
Found at i:37264800 original size:21 final size:21
Alignment explanation
Indices: 37264774--37264814 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
37264764 AACAATATAC
37264774 ATATATATGTCATATCAAAAT
1 ATATATATGTCATATCAAAAT
37264795 ATATATATGTCATATCAAAA
1 ATATATATGTCATATCAAAA
37264815 ATCCAGTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.49, C:0.10, G:0.05, T:0.37
Consensus pattern (21 bp):
ATATATATGTCATATCAAAAT
Found at i:37266605 original size:21 final size:21
Alignment explanation
Indices: 37266579--37266636 Score: 116
Period size: 21 Copynumber: 2.8 Consensus size: 21
37266569 GCAAAAGAGA
37266579 CTTTTAGCGGCGTTTTTTAAG
1 CTTTTAGCGGCGTTTTTTAAG
37266600 CTTTTAGCGGCGTTTTTTAAG
1 CTTTTAGCGGCGTTTTTTAAG
37266621 CTTTTAGCGGCGTTTT
1 CTTTTAGCGGCGTTTT
37266637 AAGCGCCGCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.12, C:0.16, G:0.24, T:0.48
Consensus pattern (21 bp):
CTTTTAGCGGCGTTTTTTAAG
Found at i:37266755 original size:43 final size:43
Alignment explanation
Indices: 37266700--37266936 Score: 277
Period size: 43 Copynumber: 5.5 Consensus size: 43
37266690 TAGCGGCATG
* *
37266700 TTTTA-CATAAACGCCGCTAAAGATCAT-AGCCTTTAGCGGCGC
1 TTTTACCACAAACGCCGCTAAAGATCATGA-TCTTTAGCGGCGC
* * *
37266742 TTTT-CCATCAAACGCCGCTAAAGATCATGGTCTTTAGTGGCAC
1 TTTTACCA-CAAACGCCGCTAAAGATCATGATCTTTAGCGGCGC
* * * *
37266785 TTTTTCCACAAACACCGCTAAAGGTCATGATCTTTAGCCGCGC
1 TTTTACCACAAACGCCGCTAAAGATCATGATCTTTAGCGGCGC
* *
37266828 TTTTACCACAAACGCCACTAAA-AGTCATGATCTTTAGCGGTGC
1 TTTTACCACAAACGCCGCTAAAGA-TCATGATCTTTAGCGGCGC
* *
37266871 TTTTTACCACAAACGTCGCTAGAAG-TCATGATCTTTAGCGACGC
1 -TTTTACCACAAACGCCGCTA-AAGATCATGATCTTTAGCGGCGC
37266915 TTTTACCACAAACGCCGCTAAA
1 TTTTACCACAAACGCCGCTAAA
37266937 AACATGACTT
Statistics
Matches: 165, Mismatches: 22, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
42 8 0.05
43 117 0.71
44 38 0.23
45 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (43 bp):
TTTTACCACAAACGCCGCTAAAGATCATGATCTTTAGCGGCGC
Found at i:37267131 original size:27 final size:26
Alignment explanation
Indices: 37267049--37267133 Score: 66
Period size: 27 Copynumber: 3.2 Consensus size: 26
37267039 AGGTTAAAAG
**
37267049 AAAATTAATTAAA-TTAAATTTTCTATT
1 AAAATTAA-TAAATTTAAA-TTTAAATT
* * **
37267076 AAAATT-TTAACTTTAAAGCTAAATAT
1 AAAATTAATAAATTTAAATTTAAAT-T
37267102 AAAATTAATAAATTTAAATTTAGAATT
1 AAAATTAATAAATTTAAATTTA-AATT
37267129 AAAAT
1 AAAAT
37267134 ATTATGTTTA
Statistics
Matches: 44, Mismatches: 10, Indels: 8
0.71 0.16 0.13
Matches are distributed among these distances:
25 6 0.14
26 12 0.27
27 23 0.52
28 3 0.07
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (26 bp):
AAAATTAATAAATTTAAATTTAAATT
Found at i:37268472 original size:16 final size:16
Alignment explanation
Indices: 37268451--37268487 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
37268441 ATTTTTGTAT
*
37268451 AAAGTGCATGTCTTAA
1 AAAGTGCATGCCTTAA
37268467 AAAGTGCATGCCTTAA
1 AAAGTGCATGCCTTAA
37268483 AAAGT
1 AAAGT
37268488 AATTTAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.41, C:0.14, G:0.19, T:0.27
Consensus pattern (16 bp):
AAAGTGCATGCCTTAA
Found at i:37276042 original size:21 final size:21
Alignment explanation
Indices: 37276018--37276066 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
37276008 GTTTCTAATA
*
37276018 TCACCGCTACAGTACCCAATC
1 TCACCGCTACAGTAACCAATC
*
37276039 TCACCGCTACAGTAACTAATC
1 TCACCGCTACAGTAACCAATC
37276060 TCACCGC
1 TCACCGC
37276067 CACCGCTGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.29, C:0.41, G:0.10, T:0.20
Consensus pattern (21 bp):
TCACCGCTACAGTAACCAATC
Found at i:37277755 original size:21 final size:21
Alignment explanation
Indices: 37277729--37277782 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
37277719 CGACCCTTGA
* *
37277729 AACCCTAAATCCCTAACTCTT
1 AACCCTAAACCCCTAACTCAT
*
37277750 AACCCTTAACCCCTAACTCAT
1 AACCCTAAACCCCTAACTCAT
37277771 AACCCCTAAACC
1 AA-CCCTAAACC
37277783 TTAAATCCCA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 20 0.71
22 8 0.29
ACGTcount: A:0.35, C:0.43, G:0.00, T:0.22
Consensus pattern (21 bp):
AACCCTAAACCCCTAACTCAT
Found at i:37277766 original size:14 final size:14
Alignment explanation
Indices: 37277749--37277800 Score: 52
Period size: 14 Copynumber: 3.7 Consensus size: 14
37277739 CCCTAACTCT
37277749 TAACCCTTAACCCC
1 TAACCCTTAACCCC
* *
37277763 TAACTCATAACCCC
1 TAACCCTTAACCCC
* *
37277777 TAAACCTTAAATCCC
1 TAACCCTT-AACCCC
37277792 -AACCCTTAA
1 TAACCCTTAA
37277801 ACCATAATCC
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
13 2 0.07
14 23 0.77
15 5 0.17
ACGTcount: A:0.37, C:0.40, G:0.00, T:0.23
Consensus pattern (14 bp):
TAACCCTTAACCCC
Found at i:37277795 original size:21 final size:20
Alignment explanation
Indices: 37277771--37277811 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
37277761 CCTAACTCAT
*
37277771 AACCCCTAAACCTTAAATCCC
1 AACCCCTAAACCAT-AATCCC
*
37277792 AACCCTTAAACCATAATCCC
1 AACCCCTAAACCATAATCCC
37277812 TAATCCATAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.39, C:0.41, G:0.00, T:0.20
Consensus pattern (20 bp):
AACCCCTAAACCATAATCCC
Found at i:37278020 original size:25 final size:25
Alignment explanation
Indices: 37277991--37278038 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
37277981 TATATGAAAT
*
37277991 TATTTAATATATAAATTAAAAAACA
1 TATTTAAAATATAAATTAAAAAACA
*
37278016 TATTTAAAATGTAAATTAAAAAA
1 TATTTAAAATATAAATTAAAAAA
37278039 TAATTAATCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (25 bp):
TATTTAAAATATAAATTAAAAAACA
Found at i:37278130 original size:14 final size:15
Alignment explanation
Indices: 37278108--37278145 Score: 60
Period size: 14 Copynumber: 2.6 Consensus size: 15
37278098 AACTCTTAAT
37278108 CCCTAAACCCCTAAC
1 CCCTAAACCCCTAAC
37278123 CCCT-AACCCCTAAC
1 CCCTAAACCCCTAAC
*
37278137 CCTTAAACC
1 CCCTAAACC
37278146 TTAAATCCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 13 0.62
15 8 0.38
ACGTcount: A:0.32, C:0.53, G:0.00, T:0.16
Consensus pattern (15 bp):
CCCTAAACCCCTAAC
Found at i:37278161 original size:21 final size:21
Alignment explanation
Indices: 37278130--37278180 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
37278120 AACCCCTAAC
* *
37278130 CCCTAACCCTTAAACCTTAAAT
1 CCCTAATCCTTAAACCAT-AAT
37278152 CCC-AATCCTTAAACCATAAT
1 CCCTAATCCTTAAACCATAAT
37278172 CCCTAATCC
1 CCCTAATCC
37278181 ATAATCCCTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 6 0.23
21 17 0.65
22 3 0.12
ACGTcount: A:0.35, C:0.39, G:0.00, T:0.25
Consensus pattern (21 bp):
CCCTAATCCTTAAACCATAAT
Found at i:37278180 original size:7 final size:7
Alignment explanation
Indices: 37278104--37278191 Score: 54
Period size: 7 Copynumber: 12.4 Consensus size: 7
37278094 CTCTAACTCT
37278104 TAATCCC
1 TAATCCC
*
37278111 TAAACCCC
1 T-AATCCC
*
37278119 TAACCCC
1 TAATCCC
*
37278126 TAACCCC
1 TAATCCC
37278133 TAA-CCC
1 TAATCCC
* *
37278139 TTAAACCT
1 -TAATCCC
37278147 TAAATCCC
1 T-AATCCC
*
37278155 -AATCCT
1 TAATCCC
* *
37278161 TAAACCA
1 TAATCCC
37278168 TAATCCC
1 TAATCCC
*
37278175 TAATCCA
1 TAATCCC
37278182 TAATCCC
1 TAATCCC
37278189 TAA
1 TAA
37278192 ATTCATACTC
Statistics
Matches: 65, Mismatches: 11, Indels: 10
0.76 0.13 0.12
Matches are distributed among these distances:
6 8 0.12
7 45 0.69
8 12 0.18
ACGTcount: A:0.36, C:0.40, G:0.00, T:0.24
Consensus pattern (7 bp):
TAATCCC
Found at i:37278627 original size:41 final size:41
Alignment explanation
Indices: 37278557--37278868 Score: 356
Period size: 41 Copynumber: 7.6 Consensus size: 41
37278547 TAAAGTGTTT
* * *
37278557 TTAGCGGCGCTTTTTGAAAAATGCCGCTAAAACCCCGAGCG
1 TTAGCGGCGCTTTTTGAAAAACGCCGCTAAAACCCCCAGCA
* * * *
37278598 TTAGTGACGCTTTTTGAAAAACGCTGCTAAAACCCCGAGCA
1 TTAGCGGCGCTTTTTGAAAAACGCCGCTAAAACCCCCAGCA
* * *
37278639 TTAGTGTCGCTTTTTGAAAAACGCCGCTAAAGCCCCCAGCA
1 TTAGCGGCGCTTTTTGAAAAACGCCGCTAAAACCCCCAGCA
* * *
37278680 TTAGCGGCGCTTTTTGAAAAATGCCGTTAAAGCCCCCAGCA
1 TTAGCGGCGCTTTTTGAAAAACGCCGCTAAAACCCCCAGCA
* * * *
37278721 TTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGCCCCCAGCG
1 TTAGCGGCGCTTTTTGAAAAACGCCGCTAAAACCCCCAGCA
* * *
37278762 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACCTCAAGCA
1 TTAGCGGCGCTTTTTGAAAAACGCCGCTAAAACCCCCAGCA
* * * * ** *
37278803 TTAGCGGCGCTTTCTCAAAAACACCGCTAAATCCCTGAACA
1 TTAGCGGCGCTTTTTGAAAAACGCCGCTAAAACCCCCAGCA
*
37278844 TTAGTGGCGCTTTTTTG-AAAACGCC
1 TTAGCGGCGC-TTTTTGAAAAACGCC
37278869 ACGAAAGCCT
Statistics
Matches: 238, Mismatches: 32, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
41 234 0.98
42 4 0.02
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (41 bp):
TTAGCGGCGCTTTTTGAAAAACGCCGCTAAAACCCCCAGCA
Found at i:37284966 original size:18 final size:18
Alignment explanation
Indices: 37284945--37284984 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
37284935 TAGAGTTCGA
* *
37284945 AAATATATAAAAAGATAT
1 AAATAAATAAAAAGAAAT
*
37284963 AAATAAATAAAATGAAAT
1 AAATAAATAAAAAGAAAT
37284981 AAAT
1 AAAT
37284985 GTATTTAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25
Consensus pattern (18 bp):
AAATAAATAAAAAGAAAT
Found at i:37287922 original size:22 final size:22
Alignment explanation
Indices: 37287865--37287940 Score: 77
Period size: 22 Copynumber: 3.4 Consensus size: 22
37287855 AAACTAATCC
* *
37287865 TCTCTCAAATTTCCTCTCAGTT
1 TCTCTCAAAGTTCCTCTCAATT
37287887 TCT-TCTAAAGTTCCTCTCAATT
1 TCTCTC-AAAGTTCCTCTCAATT
37287909 TACTCTCAAA-TTCCT-TCAAAATT
1 T-CTCTCAAAGTTCCTCTC--AATT
37287932 TCTCTCAAA
1 TCTCTCAAA
37287941 TCCATATTTA
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
21 4 0.09
22 31 0.66
23 10 0.21
24 2 0.04
ACGTcount: A:0.26, C:0.29, G:0.03, T:0.42
Consensus pattern (22 bp):
TCTCTCAAAGTTCCTCTCAATT
Found at i:37287937 original size:33 final size:33
Alignment explanation
Indices: 37287865--37287939 Score: 80
Period size: 33 Copynumber: 2.2 Consensus size: 33
37287855 AAACTAATCC
* * * *
37287865 TCTCTCAAATTTCCTCTCAGTTTCTTCTAAAGTT
1 TCTCTC-AATTTACTCTCAATTCCTTCTAAAATT
*
37287899 CCTCTCAATTTACTCTCAAATTCCTTC-AAAATT
1 TCTCTCAATTTACTCTC-AATTCCTTCTAAAATT
37287932 TCTCTCAA
1 TCTCTCAA
37287940 ATCCATATTT
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
33 22 0.65
34 12 0.35
ACGTcount: A:0.25, C:0.29, G:0.03, T:0.43
Consensus pattern (33 bp):
TCTCTCAATTTACTCTCAATTCCTTCTAAAATT
Found at i:37287941 original size:11 final size:11
Alignment explanation
Indices: 37287865--37287941 Score: 54
Period size: 11 Copynumber: 6.9 Consensus size: 11
37287855 AAACTAATCC
37287865 TCTCTCAAATT
1 TCTCTCAAATT
*
37287876 TCCTCTC-AGTT
1 T-CTCTCAAATT
37287887 TCT-TCTAAAGTT
1 TCTCTC-AAA-TT
*
37287899 CCTCTC-AATT
1 TCTCTCAAATT
37287909 TACTCTCAAATT
1 T-CTCTCAAATT
*
37287921 CCT-TCAAAATT
1 TCTCTC-AAATT
37287932 TCTCTCAAAT
1 TCTCTCAAAT
37287942 CCATATTTAT
Statistics
Matches: 51, Mismatches: 6, Indels: 18
0.68 0.08 0.24
Matches are distributed among these distances:
9 2 0.04
10 6 0.12
11 26 0.51
12 15 0.29
13 2 0.04
ACGTcount: A:0.26, C:0.29, G:0.03, T:0.43
Consensus pattern (11 bp):
TCTCTCAAATT
Found at i:37287966 original size:51 final size:51
Alignment explanation
Indices: 37287903--37288000 Score: 126
Period size: 51 Copynumber: 1.9 Consensus size: 51
37287893 AAAGTTCCTC
*
37287903 TCAATTTACTCTCAAATTCCT-TCAAAATTTCTCTCAAATCCATATTTATTT
1 TCAATTTACTCTCAAATTCCTCT-AAAATTTATCTCAAATCCATATTTATTT
* * * * *
37287954 TCAATTTGCTCTCAAGTTCCTCTTAAATTTATCTTAAATCCCTATTT
1 TCAATTTACTCTCAAATTCCTCTAAAATTTATCTCAAATCCATATTT
37288001 TTAAATAATT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
51 39 0.98
52 1 0.03
ACGTcount: A:0.29, C:0.23, G:0.02, T:0.46
Consensus pattern (51 bp):
TCAATTTACTCTCAAATTCCTCTAAAATTTATCTCAAATCCATATTTATTT
Found at i:37289809 original size:18 final size:18
Alignment explanation
Indices: 37289782--37289821 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
37289772 GAGGTGCGTT
* *
37289782 TCCTAGCCCTTTTATGTA
1 TCCTAACCCTTATATGTA
*
37289800 TCCTAACCCTTATATGTT
1 TCCTAACCCTTATATGTA
37289818 TCCT
1 TCCT
37289822 TTTTCGAGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.17, C:0.30, G:0.07, T:0.45
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:37290392 original size:22 final size:22
Alignment explanation
Indices: 37290358--37290540 Score: 190
Period size: 22 Copynumber: 8.4 Consensus size: 22
37290348 AATACATAAT
* *
37290358 TTAATTTACAAAACCTTAAACCC
1 TTAACTTA-AAAACCCTAAACCC
*
37290381 TTAACCTAAAAACCCTAAACCC
1 TTAACTTAAAAACCCTAAACCC
* *
37290403 TTAATTTAAAAACCCTAACCCC
1 TTAACTTAAAAACCCTAAACCC
* * * * *
37290425 TAAACCTAAAAACCAT-AGCCA
1 TTAACTTAAAAACCCTAAACCC
*
37290446 TTAACTTTAAAACCCTAAACCC
1 TTAACTTAAAAACCCTAAACCC
**
37290468 TTAACTTAAAAACCCT-AACTT
1 TTAACTTAAAAACCCTAAACCC
**
37290489 TTAACTTTTAAACCCTAAACCC
1 TTAACTTAAAAACCCTAAACCC
* *
37290511 TTAAATTGAAAACCCTAAACCC
1 TTAACTTAAAAACCCTAAACCC
37290533 TTAACTTA
1 TTAACTTA
37290541 CTATTTGCCC
Statistics
Matches: 128, Mismatches: 30, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
21 32 0.25
22 90 0.70
23 6 0.05
ACGTcount: A:0.43, C:0.29, G:0.01, T:0.27
Consensus pattern (22 bp):
TTAACTTAAAAACCCTAAACCC
Found at i:37290459 original size:43 final size:43
Alignment explanation
Indices: 37290367--37290539 Score: 186
Period size: 43 Copynumber: 4.0 Consensus size: 43
37290357 TTTAATTTAC
* *
37290367 AAAACCTTAAACCCTTAACCTAAAAACCCTAAACCCTTAA-TTT
1 AAAACCCTAAACCCTTAACCTAAAAACCCT-AACCATTAACTTT
* * * *
37290410 AAAAACCCTAACCCCTAAACCTAAAAACCATAGCCATTAACTTT
1 -AAAACCCTAAACCCTTAACCTAAAAACCCTAACCATTAACTTT
* **
37290454 AAAACCCTAAACCCTTAACTTAAAAACCCTAACTTTTAACTTT
1 AAAACCCTAAACCCTTAACCTAAAAACCCTAACCATTAACTTT
* ** * *
37290497 TAAACCCTAAACCCTTAAATTGAAAACCCTAAACCCTTAACTT
1 AAAACCCTAAACCCTTAACCTAAAAACCCT-AACCATTAACTT
37290540 ACTATTTGCC
Statistics
Matches: 109, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
43 70 0.64
44 39 0.36
ACGTcount: A:0.43, C:0.30, G:0.01, T:0.25
Consensus pattern (43 bp):
AAAACCCTAAACCCTTAACCTAAAAACCCTAACCATTAACTTT
Found at i:37290523 original size:65 final size:66
Alignment explanation
Indices: 37290367--37290540 Score: 199
Period size: 65 Copynumber: 2.7 Consensus size: 66
37290357 TTTAATTTAC
* * *
37290367 AAAACCTTAAACCCTTAACCTAAAAACCCTAAACCCTTAATTTAAAAACCCTAACCCCTAAACCT
1 AAAACCATAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCCCTAAACCT
37290432 A
66 A
* * * ** * *
37290433 AAAACCAT-AGCCATTAACTTTAAAACCCTAAACCCTTAACTTAAAAACCCTAA-CTTTTAACTT
1 AAAACCATAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCCCTAAACCT
*
37290496 T
66 A
* * * *
37290497 TAAACCCTAAACCCTTAAATTGAAAACCCTAAACCCTTAACTTA
1 AAAACCATAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTA
37290541 CTATTTGCCC
Statistics
Matches: 90, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
64 12 0.13
65 71 0.79
66 7 0.08
ACGTcount: A:0.44, C:0.30, G:0.01, T:0.25
Consensus pattern (66 bp):
AAAACCATAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCCCTAAACCT
A
Found at i:37290764 original size:126 final size:125
Alignment explanation
Indices: 37290540--37290900 Score: 485
Period size: 126 Copynumber: 2.9 Consensus size: 125
37290530 CCCTTAACTT
* * *
37290540 ACTATTTGCCCAGAAACGTTAACTCAAAATTATTTTT-CAGGA-CATACTGTAGCAAAAGTGCGT
1 ACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGACCA-ACTGTAGCAAAAGTGCGT
* * *
37290603 CCACGTGGGCGCGACTTCACAAATTATTCTTATAAAGCATCCTGCTTGAAGCGTTTTTTAA
65 CCACGTGGGCGCGACTTCACAAAATCTTCTCATAAAGCATCCTGCTTGAAGCGTTTTTTAA
* *
37290664 ACTATTTGCTCAAAAACGTCAACTCGAAATTATTTCTTCCAAGACCAACTGTAGCAAAAGTGCGT
1 ACTATTTGCTCAGAAACGTCAACTCGAAATTATTT-TTCCAGGACCAACTGTAGCAAAAGTGCGT
* * * * *
37290729 CCACGAGAGCGCGATTTCACAAAGTCTTCTCATAAAGGATCCTGCTTGAAGCGTTTTTTAA
65 CCACGTGGGCGCGACTTCACAAAATCTTCTCATAAAGCATCCTGCTTGAAGCGTTTTTTAA
* * * * *
37290790 ACTATTTGCTCAGAAACGTCAAGTTGAAATTATTTTTCCAGGACCTACTGTAGCAAAAGCGCGTA
1 ACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGACCAACTGTAGCAAAAGTGCGTC
* * *
37290855 CACGTGGGTGCGACTTCA-AAAATCCTTCTGATAAATCATCCTGCTT
66 CACGTGGGCGCGACTTCACAAAAT-CTTCTCATAAAGCATCCTGCTT
37290901 TGATTTATCT
Statistics
Matches: 206, Mismatches: 27, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
124 35 0.17
125 61 0.30
126 108 0.52
127 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (125 bp):
ACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGACCAACTGTAGCAAAAGTGCGTC
CACGTGGGCGCGACTTCACAAAATCTTCTCATAAAGCATCCTGCTTGAAGCGTTTTTTAA
Found at i:37295246 original size:17 final size:16
Alignment explanation
Indices: 37295208--37295246 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
37295198 ACCTCGTAGT
*
37295208 TTTGGTGAGCTCGCAG
1 TTTGGTGAGCTCGCAA
37295224 TCTTGGTGAGCTCGCACA
1 T-TTGGTGAGCTCGCA-A
37295242 TTTGG
1 TTTGG
37295247 AGAGTTTGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 18 0.90
18 1 0.05
ACGTcount: A:0.13, C:0.21, G:0.33, T:0.33
Consensus pattern (16 bp):
TTTGGTGAGCTCGCAA
Found at i:37307303 original size:17 final size:17
Alignment explanation
Indices: 37307260--37307311 Score: 52
Period size: 17 Copynumber: 3.0 Consensus size: 17
37307250 AATTTGTAAA
*
37307260 ATATATAAATTCAAAA-
1 ATATATAAATTTAAAAT
* *
37307276 AGAATACAAATTTAAAAT
1 A-TATATAAATTTAAAAT
37307294 ATATATAAATTATAAAAT
1 ATATATAAATT-TAAAAT
37307312 TTATCAAATT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
16 1 0.04
17 20 0.71
18 7 0.25
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.33
Consensus pattern (17 bp):
ATATATAAATTTAAAAT
Found at i:37307320 original size:17 final size:19
Alignment explanation
Indices: 37307282--37307322 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 19
37307272 AAAAAGAATA
37307282 CAAATT-TAAAATATATAT
1 CAAATTATAAAATATATAT
37307300 -AAATTATAAAAT-T-TAT
1 CAAATTATAAAATATATAT
37307316 CAAATTA
1 CAAATTA
37307323 AAACTTAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 3 0.14
17 12 0.57
18 6 0.29
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (19 bp):
CAAATTATAAAATATATAT
Done.