Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56598092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1600000 characters in sequence are not A, C, G, or T
File 133 of 185
Found at i:41286229 original size:21 final size:21
Alignment explanation
Indices: 41286204--41286247 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
41286194 TAAATTTAAC
* * *
41286204 TTAATTTAATGAAATTCATAT
1 TTAATTCAATCAAATTCAAAT
41286225 TTAATTCAATCAAATTCAAAT
1 TTAATTCAATCAAATTCAAAT
41286246 TT
1 TT
41286248 TAGGCGGAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.43, C:0.09, G:0.02, T:0.45
Consensus pattern (21 bp):
TTAATTCAATCAAATTCAAAT
Found at i:41289159 original size:12 final size:12
Alignment explanation
Indices: 41289142--41289178 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
41289132 GCAATAAATG
41289142 AGTCATCAGAGA
1 AGTCATCAGAGA
41289154 AGTCATCAGAGA
1 AGTCATCAGAGA
* *
41289166 AGTTATCATAGA
1 AGTCATCAGAGA
41289178 A
1 A
41289179 AATCCTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.43, C:0.14, G:0.22, T:0.22
Consensus pattern (12 bp):
AGTCATCAGAGA
Found at i:41296832 original size:5 final size:5
Alignment explanation
Indices: 41296822--41296855 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
41296812 GAACAAATAT
41296822 ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG ATTC
1 ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG ATTC
41296856 AAATTCCATC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.21, C:0.21, G:0.18, T:0.41
Consensus pattern (5 bp):
ATTCG
Found at i:41297108 original size:27 final size:27
Alignment explanation
Indices: 41297077--41297153 Score: 120
Period size: 27 Copynumber: 2.9 Consensus size: 27
41297067 CTGCATCGAG
*
41297077 ACCCTCATAAGGTAAAATGA-TCGAAAT
1 ACCCTCATAGGGTAAAATGACT-GAAAT
41297104 ACCCTCATAGGGTAAAATGACTGAAAT
1 ACCCTCATAGGGTAAAATGACTGAAAT
*
41297131 ACCCCCATAGGGTAAAATGACTG
1 ACCCTCATAGGGTAAAATGACTG
41297154 TTATACCCCT
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
27 46 0.98
28 1 0.02
ACGTcount: A:0.40, C:0.21, G:0.18, T:0.21
Consensus pattern (27 bp):
ACCCTCATAGGGTAAAATGACTGAAAT
Found at i:41297159 original size:27 final size:27
Alignment explanation
Indices: 41297077--41297162 Score: 111
Period size: 27 Copynumber: 3.2 Consensus size: 27
41297067 CTGCATCGAG
* *
41297077 ACCCTCATAAGGTAAAATGA-TCGAAAT
1 ACCCCCATAGGGTAAAATGACT-GAAAT
*
41297104 ACCCTCATAGGGTAAAATGACTGAAAT
1 ACCCCCATAGGGTAAAATGACTGAAAT
**
41297131 ACCCCCATAGGGTAAAATGACTGTTAT
1 ACCCCCATAGGGTAAAATGACTGAAAT
41297158 ACCCC
1 ACCCC
41297163 TAGGAGATGA
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 53 0.98
28 1 0.02
ACGTcount: A:0.38, C:0.23, G:0.16, T:0.22
Consensus pattern (27 bp):
ACCCCCATAGGGTAAAATGACTGAAAT
Found at i:41297669 original size:81 final size:80
Alignment explanation
Indices: 41297534--41297756 Score: 302
Period size: 81 Copynumber: 2.8 Consensus size: 80
41297524 GGCGGTCAAT
* * * *
41297534 AAATGATCAAAATACCTTCATAGGGTAAAATGACAGAAATACCCCTATATGGTAAAATGATCGAG
1 AAATGATCAAAATACCCTCATAGGGTAAAATGACA-AAATACCCCCATAGGGTAAAATGATCGAA
* *
41297599 ATGCCCCTATAGGGTA
65 ATACCCCTATAAGGTA
* *
41297615 AAATGATCAAAATACCCTCATAGGGTAAAATGATGAAAATACCCCCATAGGGTAAAATGACCGAA
1 AAATGATCAAAATACCCTCATAGGGTAAAATGA-CAAAATACCCCCATAGGGTAAAATGATCGAA
41297680 ATACCCCTATAAGGTA
65 ATACCCCTATAAGGTA
* * * * *
41297696 AAATAACCGAAATACCCCCATAGGGTAAAATGACCAAAGTACCCCCATAGGGTAAAATGAT
1 AAATGATCAAAATACCCTCATAGGGTAAAATGA-CAAAATACCCCCATAGGGTAAAATGAT
41297757 TGTTATACCT
Statistics
Matches: 125, Mismatches: 16, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
81 124 0.99
82 1 0.01
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.20
Consensus pattern (80 bp):
AAATGATCAAAATACCCTCATAGGGTAAAATGACAAAATACCCCCATAGGGTAAAATGATCGAAA
TACCCCTATAAGGTA
Found at i:41297765 original size:27 final size:27
Alignment explanation
Indices: 41297534--41297755 Score: 250
Period size: 27 Copynumber: 8.2 Consensus size: 27
41297524 GGCGGTCAAT
* * **
41297534 AAATGATCAAAATACCTTCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * *
41297561 AAATGACAGAAATACCCCTATATGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * * *
41297588 AAATGATCGAGATGCCCCTATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * *
41297615 AAATGATCAAAATACCCTCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
*
41297642 AAATGA-TGAAAATACCCCCATAGGGTA
1 AAATGACCG-AAATACCCCCATAGGGTA
* *
41297669 AAATGACCGAAATACCCCTATAAGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
*
41297696 AAATAACCGAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
41297723 AAATGACC-AAAGTACCCCCATAGGGTA
1 AAATGACCGAAA-TACCCCCATAGGGTA
41297750 AAATGA
1 AAATGA
41297756 TTGTTATACC
Statistics
Matches: 165, Mismatches: 27, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
26 3 0.02
27 161 0.98
28 1 0.01
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.20
Consensus pattern (27 bp):
AAATGACCGAAATACCCCCATAGGGTA
Found at i:41298132 original size:28 final size:28
Alignment explanation
Indices: 41298092--41298235 Score: 166
Period size: 28 Copynumber: 5.2 Consensus size: 28
41298082 CATTGTACTG
41298092 TTACTGTATTGGGCTAAGGCCCACACTA
1 TTACTGTATTGGGCTAAGGCCCACACTA
* *
41298120 TTACTGTACTGGGATAAGGCCCACACTA
1 TTACTGTATTGGGCTAAGGCCCACACTA
* * *
41298148 TTACTTTATTAGGTTAAGGCCCACACTA
1 TTACTGTATTGGGCTAAGGCCCACACTA
* * * ** *
41298176 TTAATTTATTGGGCTAAAGTTCACACTG
1 TTACTGTATTGGGCTAAGGCCCACACTA
*
41298204 TTACTGTATCGGGC-AAGGCCCACACTA
1 TTACTGTATTGGGCTAAGGCCCACACTA
41298231 -TACTG
1 TTACTG
41298236 ATGCTGAATA
Statistics
Matches: 96, Mismatches: 20, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
26 5 0.05
27 9 0.09
28 82 0.85
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (28 bp):
TTACTGTATTGGGCTAAGGCCCACACTA
Found at i:41298869 original size:21 final size:21
Alignment explanation
Indices: 41298836--41298880 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
41298826 AATTTAACTC
* * *
41298836 AATTTAATGAAATTCATATTT
1 AATTCAATCAAATTCACATTT
41298857 AATTCAATCAAATTCACATTT
1 AATTCAATCAAATTCACATTT
41298878 AAT
1 AAT
41298881 CCTTATTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.44, C:0.11, G:0.02, T:0.42
Consensus pattern (21 bp):
AATTCAATCAAATTCACATTT
Found at i:41298892 original size:11 final size:11
Alignment explanation
Indices: 41298874--41298898 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
41298864 TCAAATTCAC
41298874 ATTTAATCCTT
1 ATTTAATCCTT
41298885 ATTTAATCCTT
1 ATTTAATCCTT
41298896 ATT
1 ATT
41298899 CCAAGCGTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.16, G:0.00, T:0.56
Consensus pattern (11 bp):
ATTTAATCCTT
Found at i:41302145 original size:109 final size:109
Alignment explanation
Indices: 41302007--41302210 Score: 309
Period size: 109 Copynumber: 1.9 Consensus size: 109
41301997 GTGAGCTGGG
* * * *
41302007 AATTTGATTTACACATTTCAAAGGCTACACCATGAACATTCATATAGGCATATCTTGCCATGGAT
1 AATTCGATTAACACATTTCAAAGGCTACACCATGAACATTCATACAGACATATCTTGCCATGGAT
*
41302072 TTTAACCACATGGTCTTACACACATTCATGTATCATGATCTTCC
66 CTTAACCACATGGTCTTACACACATTCATGTATCATGATCTTCC
** * *
41302116 AATTCGATTAACACATTTTGAAGGCTACACCATGAACATTCATACAGACATATCTTTCCATGGGT
1 AATTCGATTAACACATTTCAAAGGCTACACCATGAACATTCATACAGACATATCTTGCCATGGAT
* *
41302181 CTTGACTACATGGTCTTACACACATTCATG
66 CTTAACCACATGGTCTTACACACATTCATG
41302211 AATTGTGATA
Statistics
Matches: 84, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
109 84 1.00
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.33
Consensus pattern (109 bp):
AATTCGATTAACACATTTCAAAGGCTACACCATGAACATTCATACAGACATATCTTGCCATGGAT
CTTAACCACATGGTCTTACACACATTCATGTATCATGATCTTCC
Found at i:41304677 original size:27 final size:27
Alignment explanation
Indices: 41304637--41304709 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
41304627 CAAATTATCA
*
41304637 CCACGAGGGATATTCTTTCAGAGA-TTG
1 CCACGAAGGATATTCTTTCAGA-ATTTG
* *
41304664 CCACGAAGGCTATTCTTTCATAATTTG
1 CCACGAAGGATATTCTTTCAGAATTTG
* *
41304691 CCACAAAGGTTATTCTTTC
1 CCACGAAGGATATTCTTTC
41304710 CTTTTGTGTT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 1 0.03
27 39 0.98
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (27 bp):
CCACGAAGGATATTCTTTCAGAATTTG
Found at i:41319206 original size:20 final size:20
Alignment explanation
Indices: 41319181--41319221 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
41319171 CATTGCTCAA
41319181 ATTCATATTCATCACAACAT
1 ATTCATATTCATCACAACAT
41319201 ATTCATATTCATCACAACAT
1 ATTCATATTCATCACAACAT
41319221 A
1 A
41319222 CCTGATTCGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.41, C:0.24, G:0.00, T:0.34
Consensus pattern (20 bp):
ATTCATATTCATCACAACAT
Found at i:41319391 original size:42 final size:42
Alignment explanation
Indices: 41319332--41319436 Score: 117
Period size: 42 Copynumber: 2.5 Consensus size: 42
41319322 CAATGCCAAC
* * *
41319332 GTCCCAGAC-GTGGTCTTACATGTAATC-AATATCGAT-GTCATT
1 GTCCCAGACAG-GGTCTTACACGAAATCAAATAT-GATACTCA-T
*
41319374 GTCCCAGACAGGGTCTTACACGAAATCAAATATGATACTGAT
1 GTCCCAGACAGGGTCTTACACGAAATCAAATATGATACTCAT
*
41319416 GTCCCAGACATGGTCTTACAC
1 GTCCCAGACAGGGTCTTACAC
41319437 ATAAATCTCA
Statistics
Matches: 55, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
42 47 0.85
43 8 0.15
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.28
Consensus pattern (42 bp):
GTCCCAGACAGGGTCTTACACGAAATCAAATATGATACTCAT
Found at i:41319475 original size:86 final size:84
Alignment explanation
Indices: 41319332--41319492 Score: 202
Period size: 86 Copynumber: 1.9 Consensus size: 84
41319322 CAATGCCAAC
* ** * **
41319332 GTCCCAGACGTGGTCTTACATGTAATCAATATCGATGTCATTGTCCCAGACAGGGTCTTACACGA
1 GTCCCAGACATGGTCTTACACATAATCAATATCGATGCCAACGTCCCAGACAGGGTCTTACACGA
41319397 -AATCAAATATGATACTGAT
66 TAA-CAAATATGATACTGAT
41319416 GTCCCAGACATGGTCTTACACATAAATCTCAA-ATCGATGCCAACGTCCCAGAC-GTGGTCTTAC
1 GTCCCAGACATGGTCTTACACAT-AA--TCAATATCGATGCCAACGTCCCAGACAG-GGTCTTAC
41319479 ACGATAACAAATAT
62 ACGATAACAAATAT
41319493 CGGAATCCTA
Statistics
Matches: 66, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
84 20 0.30
85 3 0.05
86 37 0.56
87 6 0.09
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.26
Consensus pattern (84 bp):
GTCCCAGACATGGTCTTACACATAATCAATATCGATGCCAACGTCCCAGACAGGGTCTTACACGA
TAACAAATATGATACTGAT
Found at i:41325217 original size:18 final size:21
Alignment explanation
Indices: 41325175--41325222 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 21
41325165 TTACATTTCA
*
41325175 TTTAATTTTGTTTATGAATTC
1 TTTAATTTTGTATATGAATTC
41325196 TTTAATTTT-TATA-GAATT-
1 TTTAATTTTGTATATGAATTC
41325214 TTTAGATTT
1 TTTA-ATTT
41325223 AAAAAAAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 4 0.16
19 9 0.36
20 3 0.12
21 9 0.36
ACGTcount: A:0.27, C:0.02, G:0.08, T:0.62
Consensus pattern (21 bp):
TTTAATTTTGTATATGAATTC
Found at i:41325222 original size:19 final size:18
Alignment explanation
Indices: 41325185--41325222 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
41325175 TTTAATTTTG
41325185 TTTATGAATTCTTTAATT
1 TTTATGAATTCTTTAATT
41325203 TTTATAGAATT-TTTAGATT
1 TTTAT-GAATTCTTTA-ATT
41325222 T
1 T
41325223 AAAAAAAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.29, C:0.03, G:0.08, T:0.61
Consensus pattern (18 bp):
TTTATGAATTCTTTAATT
Found at i:41331920 original size:9 final size:9
Alignment explanation
Indices: 41331906--41331930 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
41331896 TAAACAATTC
41331906 AATAATATA
1 AATAATATA
41331915 AATAATATA
1 AATAATATA
41331924 AATAATA
1 AATAATA
41331931 AAAAATGTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (9 bp):
AATAATATA
Found at i:41332474 original size:9 final size:9
Alignment explanation
Indices: 41332460--41332496 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
41332450 TATAGTTTGA
41332460 TATTCGAAT
1 TATTCGAAT
41332469 TATTCGAAT
1 TATTCGAAT
*
41332478 TATTCGAGT
1 TATTCGAAT
41332487 TATTCGAAT
1 TATTCGAAT
41332496 T
1 T
41332497 TGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:41332566 original size:9 final size:9
Alignment explanation
Indices: 41332549--41332579 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
41332539 TCGAGTTGAT
41332549 TCGAATAAC
1 TCGAATAAC
*
41332558 TCGATTAAC
1 TCGAATAAC
41332567 TCGAATAAC
1 TCGAATAAC
41332576 TCGA
1 TCGA
41332580 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:41334368 original size:9 final size:10
Alignment explanation
Indices: 41334344--41334369 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
41334334 TATTTTTAAA
41334344 TAAAAAATAT
1 TAAAAAATAT
41334354 TAAAAAATAT
1 TAAAAAATAT
41334364 TAAAAA
1 TAAAAA
41334370 CGAGAGAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (10 bp):
TAAAAAATAT
Found at i:41338620 original size:15 final size:15
Alignment explanation
Indices: 41338596--41338625 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
41338586 AGAATTTTTT
*
41338596 ATATATATTTTAAAA
1 ATATAAATTTTAAAA
41338611 ATATAAATTTTAAAA
1 ATATAAATTTTAAAA
41338626 TTTTGATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
ATATAAATTTTAAAA
Found at i:41339694 original size:54 final size:54
Alignment explanation
Indices: 41339635--41339737 Score: 197
Period size: 54 Copynumber: 1.9 Consensus size: 54
41339625 TAACGTCTAG
*
41339635 ATTCAACGTGGACAAATGGTTGTTAAAATTCAATTAAGTCTGGATAACCTAAAC
1 ATTCAACGTGGACAAATGGTTGTTAAAATTCAATTAAGTCTGGACAACCTAAAC
41339689 ATTCAACGTGGACAAATGGTTGTTAAAATTCAATTAAGTCTGGACAACC
1 ATTCAACGTGGACAAATGGTTGTTAAAATTCAATTAAGTCTGGACAACC
41339738 ATTTGTTTAG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (54 bp):
ATTCAACGTGGACAAATGGTTGTTAAAATTCAATTAAGTCTGGACAACCTAAAC
Found at i:41339946 original size:20 final size:20
Alignment explanation
Indices: 41339917--41339954 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
41339907 ATATTTGAAG
*
41339917 TATAAAAAATTATTAAAAAC
1 TATAAAAAATTAATAAAAAC
*
41339937 TATAAGAAATTAATAAAA
1 TATAAAAAATTAATAAAA
41339955 TATGATTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.29
Consensus pattern (20 bp):
TATAAAAAATTAATAAAAAC
Found at i:41340563 original size:20 final size:20
Alignment explanation
Indices: 41340534--41340572 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
41340524 ATATTTGAAG
41340534 TATAAAAAATTATTAAAAAC
1 TATAAAAAATTATTAAAAAC
*
41340554 TATAAGAAATTATTAAAAA
1 TATAAAAAATTATTAAAAA
41340573 TTCTGTCCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (20 bp):
TATAAAAAATTATTAAAAAC
Found at i:41344470 original size:15 final size:15
Alignment explanation
Indices: 41344450--41344478 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
41344440 TGTCCTGTTA
41344450 AATAAAGTTGCTATG
1 AATAAAGTTGCTATG
41344465 AATAAAGTTGCTAT
1 AATAAAGTTGCTAT
41344479 AAGTGATGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.17, T:0.34
Consensus pattern (15 bp):
AATAAAGTTGCTATG
Found at i:41346342 original size:18 final size:17
Alignment explanation
Indices: 41346309--41346343 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
41346299 GGCTTGGGAA
*
41346309 AAAAATTATTGGGTTGG
1 AAAAATTATTGAGTTGG
41346326 AAAAATTATATGAGTTGG
1 AAAAATTAT-TGAGTTGG
41346344 TTTGAGACTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.40, C:0.00, G:0.26, T:0.34
Consensus pattern (17 bp):
AAAAATTATTGAGTTGG
Found at i:41350643 original size:57 final size:57
Alignment explanation
Indices: 41350582--41350882 Score: 259
Period size: 57 Copynumber: 5.3 Consensus size: 57
41350572 TAAAATAACT
* * * *
41350582 TTCCACATATAAGATAATATTGACGGATTTCCCACATATAAGATAGTCTTGGTGGAC
1 TTCCACATTTAAGATAGTCTTGACGGATTTCCCACATATAAGATAGTCTTGGCGGAC
* * *
41350639 TTCCACATATACA-ATAGTCTTGGA-GGACTTCTCGCACA-A-AAGATAGTCTTGGCGAAC
1 TTCCACATTTA-AGATAGTCTT-GACGGA-TT-TCCCACATATAAGATAGTCTTGGCGGAC
* * * * * * * *
41350696 TTCCACATTTACGATAGTCCTGATGGACTTCTCACATATAAGATAGTCCTCGCAGAC
1 TTCCACATTTAAGATAGTCTTGACGGATTTCCCACATATAAGATAGTCTTGGCGGAC
* * ** * * * * * *
41350753 TTCCACATTTATGATAGTGTTGACAAACTTCCTATATATAAGATAGTCCTAGTGGAC
1 TTCCACATTTAAGATAGTCTTGACGGATTTCCCACATATAAGATAGTCTTGGCGGAC
* * * * *
41350810 TTCCACATTTATGATAGCCCTGACGGGTTTCCCACATATAAGATAGTCTTGGCGAAC
1 TTCCACATTTAAGATAGTCTTGACGGATTTCCCACATATAAGATAGTCTTGGCGGAC
*
41350867 TTCCACATTTACGATA
1 TTCCACATTTAAGATA
41350883 ATGCCATGAC
Statistics
Matches: 196, Mismatches: 40, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
55 6 0.03
56 4 0.02
57 174 0.89
58 6 0.03
59 6 0.03
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (57 bp):
TTCCACATTTAAGATAGTCTTGACGGATTTCCCACATATAAGATAGTCTTGGCGGAC
Found at i:41350655 original size:28 final size:28
Alignment explanation
Indices: 41350582--41350874 Score: 174
Period size: 29 Copynumber: 10.3 Consensus size: 28
41350572 TAAAATAACT
* * ** *
41350582 TTCCACATATAAGATAATATTGACGGAT
1 TTCCACATATAAGATAGTCTTGGTGGAC
41350610 TTCCCACATATAAGATAGTCTTGGTGGAC
1 TT-CCACATATAAGATAGTCTTGGTGGAC
*
41350639 TTCCACATATACA-ATAGTCTTGGAGGAC
1 TTCCACATATA-AGATAGTCTTGGTGGAC
* * * * *
41350667 TTCTCGCACAAAAGATAGTCTTGGCGAAC
1 TTC-CACATATAAGATAGTCTTGGTGGAC
* * * *
41350696 TTCCACATTTACGATAGTCCTGATGGAC
1 TTCCACATATAAGATAGTCTTGGTGGAC
* * **
41350724 TTCTCACATATAAGATAGTCCTCGCAGAC
1 TTC-CACATATAAGATAGTCTTGGTGGAC
* * * ****
41350753 TTCCACATTTATGATAGTGTTGACAAAC
1 TTCCACATATAAGATAGTCTTGGTGGAC
* * *
41350781 TTCCTATATATAAGATAGTCCTAGTGGAC
1 TTCC-ACATATAAGATAGTCTTGGTGGAC
* * * * ** **
41350810 TTCCACATTTATGATAGCCCTGACGGGT
1 TTCCACATATAAGATAGTCTTGGTGGAC
* *
41350838 TTCCCACATATAAGATAGTCTTGGCGAAC
1 TT-CCACATATAAGATAGTCTTGGTGGAC
41350867 TTCCACAT
1 TTCCACAT
41350875 TTACGATAAT
Statistics
Matches: 198, Mismatches: 60, Indels: 14
0.73 0.22 0.05
Matches are distributed among these distances:
28 93 0.47
29 105 0.53
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (28 bp):
TTCCACATATAAGATAGTCTTGGTGGAC
Found at i:41352300 original size:6 final size:6
Alignment explanation
Indices: 41352259--41352283 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
41352249 AGCTTTCCTT
41352259 AAATGA AAATGA AAATGA AAATGA A
1 AAATGA AAATGA AAATGA AAATGA A
41352284 GCTGACCTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (6 bp):
AAATGA
Found at i:41354151 original size:21 final size:21
Alignment explanation
Indices: 41354125--41354165 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
41354115 AGAATTACAA
41354125 AAAAAAATCAAAATAATTTTC
1 AAAAAAATCAAAATAATTTTC
*
41354146 AAAAAATTCAAAATAATTTT
1 AAAAAAATCAAAATAATTTT
41354166 TAAATCTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (21 bp):
AAAAAAATCAAAATAATTTTC
Found at i:41358895 original size:21 final size:20
Alignment explanation
Indices: 41358821--41358896 Score: 82
Period size: 21 Copynumber: 3.8 Consensus size: 20
41358811 ATTTTCGAGG
*
41358821 ATATACAATCTTACATATG-
1 ATATACAATCTTAGATATGA
** *
41358840 ATATGTAATCTTAAATATGA
1 ATATACAATCTTAGATATGA
*
41358860 TATATGCAATCTTAGATATGA
1 -ATATACAATCTTAGATATGA
41358881 CATATACAATCTTAGA
1 -ATATACAATCTTAGA
41358897 AGATATGATT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
19 16 0.33
21 32 0.67
ACGTcount: A:0.42, C:0.12, G:0.09, T:0.37
Consensus pattern (20 bp):
ATATACAATCTTAGATATGA
Found at i:41358932 original size:21 final size:23
Alignment explanation
Indices: 41358888--41358932 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
41358878 TGACATATAC
*
41358888 AATCTTAGAAGATATGATTTTGT
1 AATCTTAGAAGATATGAATTTGT
*
41358911 AATCTTA-AAGAT-TTAATTTGT
1 AATCTTAGAAGATATGAATTTGT
41358932 A
1 A
41358933 GATACCCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 8 0.40
22 5 0.25
23 7 0.35
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.44
Consensus pattern (23 bp):
AATCTTAGAAGATATGAATTTGT
Found at i:41359121 original size:19 final size:21
Alignment explanation
Indices: 41359097--41359135 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
41359087 TGTTTTCTTT
*
41359097 TTTTTTTCTT-TTT-CGATTA
1 TTTTTTACTTATTTACGATTA
41359116 TTTTTTACTTATTTACGATT
1 TTTTTTACTTATTTACGATT
41359136 TTAAAAAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.15, C:0.10, G:0.05, T:0.69
Consensus pattern (21 bp):
TTTTTTACTTATTTACGATTA
Found at i:41359365 original size:3 final size:3
Alignment explanation
Indices: 41359357--41359402 Score: 67
Period size: 3 Copynumber: 15.3 Consensus size: 3
41359347 ATTAATTTTG
*
41359357 TTA TTA TTA TTA TTA TTG TTA TTA TTA -TA TTA TATA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA
41359402 T
1 T
41359403 ACCTACATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
2 2 0.05
3 34 0.87
4 3 0.08
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:41359396 original size:18 final size:17
Alignment explanation
Indices: 41359341--41359403 Score: 69
Period size: 18 Copynumber: 3.8 Consensus size: 17
41359331 GTTTTTAGTC
41359341 TATT-TTATTA-ATT-T
1 TATTATTATTATATTAT
*
41359355 TGTTATTATTATTATTAT
1 TATTATTATTA-TATTAT
*
41359373 TGTTATTATTATATTAT
1 TATTATTATTATATTAT
41359390 ATATTATTATTATA
1 -TATTATTATTATA
41359404 CCTACATATA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
14 3 0.07
15 6 0.14
17 9 0.21
18 24 0.57
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (17 bp):
TATTATTATTATATTAT
Found at i:41366194 original size:44 final size:44
Alignment explanation
Indices: 41366121--41366739 Score: 184
Period size: 44 Copynumber: 14.1 Consensus size: 44
41366111 CCAAGCCTTG
* * * * *
41366121 TCTCCCTAAGCAGCAGCGGAGTAGGTTGAAGATTGTAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAAATCTTA
* *
41366165 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGA-CGACAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTG-CAAATCTTA
* * **** ** *
41366209 TCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCACCAAGCCTTG
1 TC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGATTGCAAATCTTA
* ** * ** * *
41366253 TCTCCCTGAGCAACAGTGGAGTAGGCTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAAATCTTA
** * *
41366297 TCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGAAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAAATCTTA
** * **** ** *
41366341 TCTTTCTAAG-A-TAGTGGGAAGCAGATTTAAGCCACCAAGCCTTG
1 TCTCCCTAAGCAGTAGT-GG-AGCAGATTGAAGATTGCAAATCTTA
* * * * * *
41366385 TCTCCCTAAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAAATCTTA
* * * ** *
41366429 TCTCCTTATGCAGTAGTGAAGCAGATCAAAGA-CGACAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTG-CAAATCTTA
* * * * **** ** *
41366473 TCTTTCC-AAG--GTAGTGAAAAGTAGATTTAAGCCACCAAGCCTTG
1 TC-TCCCTAAGCAGTAGTG--GAGCAGATTGAAGATTGCAAATCTTA
* * * * * * * *
41366517 TCTCCCTGAGTAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAAATCTTA
* * **
41366561 TCTCCCTAAGCAGTAGTGGAACAGATCGAAGACGGCAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAAATCTTA
** * * **** ** *
41366605 TCTTTCAAAG-A-TAGTGGGAAGCAGATTTAAGCCACCAAGCCTTG
1 TCTCCCTAAGCAGTAGT-GG-AGCAGATTGAAGATTGCAAATCTTA
* * * * * * *
41366649 TCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAAATCTTA
* * *
41366693 TCTCCCTAAGCAGTAGTGTAGCAGATCGAAGA-CGACAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTG-CAAATCTTA
41366737 TCT
1 TCT
41366740 TTCCAAGATA
Statistics
Matches: 388, Mismatches: 162, Indels: 50
0.65 0.27 0.08
Matches are distributed among these distances:
42 18 0.05
43 18 0.05
44 327 0.84
45 14 0.04
46 11 0.03
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.26
Consensus pattern (44 bp):
TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAAATCTTA
Found at i:41366821 original size:44 final size:44
Alignment explanation
Indices: 41366773--41366857 Score: 127
Period size: 44 Copynumber: 1.9 Consensus size: 44
41366763 TTAAGCCAGC
*
41366773 AAGTCTTATC-CTCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAT
1 AAGTCTTATCTC-CCTAAAGTTGCAGTGGAGCAGATTAAAGCTAT
* *
41366817 AAGTCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTGAAGC
1 AAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGC
41366858 ACGAATTCCT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
44 36 0.97
45 1 0.03
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (44 bp):
AAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCTAT
Found at i:41366833 original size:132 final size:132
Alignment explanation
Indices: 41365981--41366775 Score: 1252
Period size: 132 Copynumber: 6.0 Consensus size: 132
41365971 ATGAAACACT
* * *
41365981 AAGCCTTGTCTCCCTGAGCAACAGCGGAGTAGGTTGAAGATCGTAGATCTTATCTCCCTAAACAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* * * * *
41366046 TAGTGGAGTAGATTGAGGACGGA-AAATCTTATTTTTCCAAGATAGTGGGAAGCAGATTTTAGCC
66 TAGTGGAGCAGATCGAAGAC-GACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
41366110 ACC
130 ACC
* *
41366113 AAGCCTTGTCTCCCTAAGCAGCAGCGGAGTAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* *
41366178 TAGTGGAGAAGATTGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
66 TAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
41366243 CC
131 CC
* * *
41366245 AAGCCTTGTCTCCCTGAGCAACAGTGGAGTAGGCTGAAGATTGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* * *
41366310 TAGTGGAGCAGATCAAAGATGGA-AAATCTTATCTTTCTAAGATAGTGGGAAGCAGATTTAAGCC
66 TAGTGGAGCAGATCGAAGA-CGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
41366374 ACC
130 ACC
* * *
41366377 AAGCCTTGTCTCCCTAAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCTTATGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* * * ** *
41366442 TAGTGAAGCAGATCAAAGACGACAAATCTTATCTTTCCAAGGTAGTGAAAAGTAGATTTAAGCCA
66 TAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
41366507 CC
131 CC
*
41366509 AAGCCTTGTCTCCCTGAGTAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* * *
41366574 TAGTGGAACAGATCGAAGACGGCAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATTTAAGCCA
66 TAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
41366639 CC
131 CC
41366641 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* *
41366706 TAGTGTAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGTAGATTTAAGCCA
66 TAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
*
41366771 GC
131 CC
41366773 AAG
1 AAG
41366776 TCTTATCCTC
Statistics
Matches: 608, Mismatches: 52, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
131 4 0.01
132 602 0.99
133 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (132 bp):
AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
TAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
CC
Found at i:41367092 original size:44 final size:44
Alignment explanation
Indices: 41367044--41367228 Score: 113
Period size: 44 Copynumber: 4.2 Consensus size: 44
41367034 AAGATTGTAG
41367044 ATCTTATCTCCCTAAGCAGTAGTGGAACAGATCGAAGACGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAACAGATCGAAGACGGCAA
** * ** * **
41367088 ATCTTATCTTTCAAAG-A-TAGTGGGAAGCAGATTTAAGCCACCAA
1 ATCTTATCTCCCTAAGCAGTAGT-GGAA-CAGATCGAAGACGGCAA
** * * * * ** * * ** * *
41367132 GCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAACAGATCGAAGACGGCAA
* * *
41367176 ATCTTATCTCCCTAAGCAGTAGTGTAGCAGATCGAAGACGACAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAACAGATCGAAGACGGCAA
41367220 ATCTTATCT
1 ATCTTATCT
41367229 TTCCAAGATA
Statistics
Matches: 95, Mismatches: 42, Indels: 8
0.66 0.29 0.06
Matches are distributed among these distances:
42 4 0.04
43 5 0.05
44 80 0.84
45 4 0.04
46 2 0.02
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAACAGATCGAAGACGGCAA
Found at i:41367092 original size:489 final size:489
Alignment explanation
Indices: 41366503--41367481 Score: 1931
Period size: 489 Copynumber: 2.0 Consensus size: 489
41366493 GTAGATTTAA
41366503 GCCACCAAGCCTTGTCTCCCTGAGTAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
1 GCCACCAAGCCTTGTCTCCCTGAGTAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
41366568 AAGCAGTAGTGGAACAGATCGAAGACGGCAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATTT
66 AAGCAGTAGTGGAACAGATCGAAGACGGCAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATTT
41366633 AAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCC
131 AAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCC
41366698 CTAAGCAGTAGTGTAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGTAGAT
196 CTAAGCAGTAGTGTAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGTAGAT
41366763 TTAAGCCAGCAAGTCTTATCCTCCTGAAGTTGCAGTGGAGCAGATTAAAGCTATAAGTCTTATCT
261 TTAAGCCAGCAAGTCTTATCCTCCTGAAGTTGCAGTGGAGCAGATTAAAGCTATAAGTCTTATCT
41366828 CCCTAAAGTTGCAGTGGAGTAGATTGAAGCACGAATTCCTATACCTCTGAAGATGCAGTAGGATG
326 CCCTAAAGTTGCAGTGGAGTAGATTGAAGCACGAATTCCTATACCTCTGAAGATGCAGTAGGATG
*
41366893 AACATGGCTGCTTGAAGAAGAAGAGCACCAAGATCCAGTGTGACCGGGCAAAAATTGGCCATTTC
391 AACATGGCTGCTTGAAGAAGAAGAGCACCAAGATCCAGCGTGACCGGGCAAAAATTGGCCATTTC
41366958 TAAAGTCTTTGCTCTGTTCCTGTTACACGACAAT
456 TAAAGTCTTTGCTCTGTTCCTGTTACACGACAAT
41366992 GCCACCAAGCCTTGTCTCCCTGAGTAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
1 GCCACCAAGCCTTGTCTCCCTGAGTAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
41367057 AAGCAGTAGTGGAACAGATCGAAGACGGCAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATTT
66 AAGCAGTAGTGGAACAGATCGAAGACGGCAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATTT
41367122 AAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCC
131 AAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCC
41367187 CTAAGCAGTAGTGTAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGTAGAT
196 CTAAGCAGTAGTGTAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGTAGAT
41367252 TTAAGCCAGCAAGTCTTATCCTCCTGAAGTTGCAGTGGAGCAGATTAAAGCTATAAGTCTTATCT
261 TTAAGCCAGCAAGTCTTATCCTCCTGAAGTTGCAGTGGAGCAGATTAAAGCTATAAGTCTTATCT
*
41367317 CCCTGAAGTTGCAGTGGAGTAGATTGAAGCACGAATTCCTATACCTCTGAAGATGCAGTAGGATG
326 CCCTAAAGTTGCAGTGGAGTAGATTGAAGCACGAATTCCTATACCTCTGAAGATGCAGTAGGATG
*
41367382 AACATGGCTGCTTGAAGAAGAAGAGCACCAAGATCCAGCGTGACCGGGCAAAAATTGGCCATTTT
391 AACATGGCTGCTTGAAGAAGAAGAGCACCAAGATCCAGCGTGACCGGGCAAAAATTGGCCATTTC
41367447 TAAAGTCTTTGCTCTGTTCCTGTTACACGACAAT
456 TAAAGTCTTTGCTCTGTTCCTGTTACACGACAAT
41367481 G
1 G
41367482 AGCAAAGAGG
Statistics
Matches: 487, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
489 487 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (489 bp):
GCCACCAAGCCTTGTCTCCCTGAGTAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
AAGCAGTAGTGGAACAGATCGAAGACGGCAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATTT
AAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCC
CTAAGCAGTAGTGTAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGTAGAT
TTAAGCCAGCAAGTCTTATCCTCCTGAAGTTGCAGTGGAGCAGATTAAAGCTATAAGTCTTATCT
CCCTAAAGTTGCAGTGGAGTAGATTGAAGCACGAATTCCTATACCTCTGAAGATGCAGTAGGATG
AACATGGCTGCTTGAAGAAGAAGAGCACCAAGATCCAGCGTGACCGGGCAAAAATTGGCCATTTC
TAAAGTCTTTGCTCTGTTCCTGTTACACGACAAT
Found at i:41367153 original size:132 final size:132
Alignment explanation
Indices: 41366992--41367264 Score: 483
Period size: 132 Copynumber: 2.1 Consensus size: 132
41366982 ACACGACAAT
*
41366992 GCCACCAAGCCTTGTCTCCCTGAGTAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
1 GCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
*
41367057 AAGCAGTAGTGGAACAGATCGAAGACGGCAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATTT
66 AAGCAGTAGTGGAACAGATCGAAGACGACAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATTT
41367122 AA
131 AA
41367124 GCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
1 GCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
* * * *
41367189 AAGCAGTAGTGTAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGTAGATTT
66 AAGCAGTAGTGGAACAGATCGAAGACGACAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATTT
41367254 AA
131 AA
*
41367256 GCCAGCAAG
1 GCCACCAAG
41367265 TCTTATCCTC
Statistics
Matches: 134, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 134 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (132 bp):
GCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
AAGCAGTAGTGGAACAGATCGAAGACGACAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATTT
AA
Found at i:41367310 original size:44 final size:44
Alignment explanation
Indices: 41367262--41367346 Score: 136
Period size: 44 Copynumber: 1.9 Consensus size: 44
41367252 TTAAGCCAGC
41367262 AAGTCTTATC-CTCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAT
1 AAGTCTTATCTC-CCTGAAGTTGCAGTGGAGCAGATTAAAGCTAT
* *
41367306 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGC
1 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC
41367347 ACGAATTCCT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
44 37 0.97
45 1 0.03
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (44 bp):
AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAT
Found at i:41367313 original size:132 final size:132
Alignment explanation
Indices: 41366992--41367320 Score: 412
Period size: 132 Copynumber: 2.5 Consensus size: 132
41366982 ACACGACAAT
* * * * * *
41366992 GCCACCAAGCCTTGTCTCCCTGAGTAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
1 GCCACCAAGCCTTATCTCCCTGAGCAGCAGCGGAGCAGATTAAAGATTGAAGATCTTATCTCCCT
*
41367057 AAGCAGTAGTGGAACAGATCGAAGACGGCAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATTT
66 AAGCAGTAGTGGAACAGATCGAAGACGACAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATTT
41367122 AA
131 AA
* * * * *
41367124 GCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
1 GCCACCAAGCCTTATCTCCCTGAGCAGCAGCGGAGCAGATTAAAGATTGAAGATCTTATCTCCCT
* * * *
41367189 AAGCAGTAGTGTAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGTAGATTT
66 AAGCAGTAGTGGAACAGATCGAAGACGACAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATTT
41367254 AA
131 AA
* * ** * *
41367256 GCCAGCAAGTCTTATC-CTCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAT-AAG-TCTTATCTC
1 GCCACCAAGCCTTATCTC-CCTG-AGCAGCAGCGGAGCAGATTAAAGAT-TGAAGATCTTATCTC
41367318 CCT
63 CCT
41367321 GAAGTTGCAG
Statistics
Matches: 177, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
131 1 0.01
132 155 0.88
133 20 0.11
134 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (132 bp):
GCCACCAAGCCTTATCTCCCTGAGCAGCAGCGGAGCAGATTAAAGATTGAAGATCTTATCTCCCT
AAGCAGTAGTGGAACAGATCGAAGACGACAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATTT
AA
Found at i:41367368 original size:44 final size:44
Alignment explanation
Indices: 41367248--41367346 Score: 110
Period size: 44 Copynumber: 2.2 Consensus size: 44
41367238 AGTGGGAAGT
* * *
41367248 AGATTTAAGCCAGCAAGTCTTATC-CTCCTGAAGTTGCAGTGGAGC
1 AGATTAAAGCTAG-AAGTCCTATCTC-CCTGAAGTTGCAGTGGAGC
* * *
41367293 AGATTAAAGCTATAAGTCTTATCTCCCTGAAGTTGCAGTGGAGT
1 AGATTAAAGCTAGAAGTCCTATCTCCCTGAAGTTGCAGTGGAGC
*
41367337 AGATTGAAGC
1 AGATTAAAGC
41367347 ACGAATTCCT
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
44 37 0.77
45 11 0.23
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.28
Consensus pattern (44 bp):
AGATTAAAGCTAGAAGTCCTATCTCCCTGAAGTTGCAGTGGAGC
Found at i:41367598 original size:21 final size:21
Alignment explanation
Indices: 41367550--41367611 Score: 78
Period size: 19 Copynumber: 3.1 Consensus size: 21
41367540 ATTTTCGAGG
*
41367550 ATATACAGTCTTAGATATG--
1 ATATACAATCTTAGATATGAT
*
41367569 ATATGCAATCTTAGATATGAT
1 ATATACAATCTTAGATATGAT
41367590 ATATACAATCTTAGA-A-GAT
1 ATATACAATCTTAGATATGAT
41367609 ATA
1 ATA
41367612 ATTTTGTAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
19 23 0.61
20 1 0.03
21 14 0.37
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (21 bp):
ATATACAATCTTAGATATGAT
Found at i:41367829 original size:19 final size:21
Alignment explanation
Indices: 41367805--41367843 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
41367795 TGTTTTCTTT
*
41367805 TTTTTTTCTT-TTT-CGATTA
1 TTTTTTACTTATTTACGATTA
41367824 TTTTTTACTTATTTACGATT
1 TTTTTTACTTATTTACGATT
41367844 TTAAAAAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.15, C:0.10, G:0.05, T:0.69
Consensus pattern (21 bp):
TTTTTTACTTATTTACGATTA
Found at i:41368085 original size:3 final size:3
Alignment explanation
Indices: 41368065--41368107 Score: 52
Period size: 3 Copynumber: 14.3 Consensus size: 3
41368055 ATTAATTTTG
* *
41368065 TTA TTT TTA TTT TTA TTA TTA -TA TTA TATA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA T
41368108 ACCTACATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
2 2 0.06
3 29 0.85
4 3 0.09
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:41379970 original size:21 final size:21
Alignment explanation
Indices: 41379945--41379998 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
41379935 CAACTAACAC
*
41379945 AATTGTAATTTTGTATTTTGT
1 AATTGTAATTTTGTAATTTGT
*
41379966 AATTGTAAATTTGTAATTTGT
1 AATTGTAATTTTGTAATTTGT
* *
41379987 ATTTGTGATTTT
1 AATTGTAATTTT
41379999 AGGAAATAGC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.26, C:0.00, G:0.15, T:0.59
Consensus pattern (21 bp):
AATTGTAATTTTGTAATTTGT
Found at i:41379990 original size:6 final size:7
Alignment explanation
Indices: 41379947--41379997 Score: 52
Period size: 7 Copynumber: 7.3 Consensus size: 7
41379937 ACTAACACAA
41379947 TTGTAATT
1 TTGTAA-T
*
41379955 TTGTATT
1 TTGTAAT
41379962 TTGTAA-
1 TTGTAAT
41379968 TTGTAAAT
1 TTGT-AAT
41379976 TTGTAAT
1 TTGTAAT
41379983 TTGT-AT
1 TTGTAAT
*
41379989 TTGTGAT
1 TTGTAAT
41379996 TT
1 TT
41379998 TAGGAAATAG
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
6 10 0.26
7 19 0.50
8 9 0.24
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.61
Consensus pattern (7 bp):
TTGTAAT
Found at i:41380239 original size:79 final size:79
Alignment explanation
Indices: 41380100--41380254 Score: 265
Period size: 79 Copynumber: 2.0 Consensus size: 79
41380090 GAGAGATAGG
* * *
41380100 AAAGCAAAAGAGAACTGTGTAATTTATTTATAATGAGAATATGCTTCTCCTAAGTTTATATTTAT
1 AAAGCAAAAGAGAACTGTATAATTTATTTATAATGAGAATATGCTTCTCCAAAGTCTATATTTAT
41380165 AAACATAAGAAAGA
66 AAACATAAGAAAGA
41380179 AAAGCAAAAGAGAACTGTATAATTTATTTATAATGAGAATATGCTTCTCCAAAGTCTATATTTAT
1 AAAGCAAAAGAGAACTGTATAATTTATTTATAATGAGAATATGCTTCTCCAAAGTCTATATTTAT
* *
41380244 AGATATAAGAA
66 AAACATAAGAA
41380255 GTATACATTA
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
79 71 1.00
ACGTcount: A:0.45, C:0.09, G:0.14, T:0.33
Consensus pattern (79 bp):
AAAGCAAAAGAGAACTGTATAATTTATTTATAATGAGAATATGCTTCTCCAAAGTCTATATTTAT
AAACATAAGAAAGA
Found at i:41384627 original size:38 final size:39
Alignment explanation
Indices: 41384571--41384644 Score: 132
Period size: 38 Copynumber: 1.9 Consensus size: 39
41384561 TATTATTTCA
*
41384571 CATATATATAAATTAATAAATATAATCATACAATTCAAC
1 CATATATATAAATTAATAAATATAATCATAAAATTCAAC
41384610 CATA-ATATAAATTAATAAATATAATCATAAAATTC
1 CATATATATAAATTAATAAATATAATCATAAAATTC
41384645 CATATGAACG
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
38 30 0.88
39 4 0.12
ACGTcount: A:0.55, C:0.11, G:0.00, T:0.34
Consensus pattern (39 bp):
CATATATATAAATTAATAAATATAATCATAAAATTCAAC
Found at i:41386119 original size:10 final size:11
Alignment explanation
Indices: 41386101--41386130 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
41386091 ATATTTTTAG
41386101 TTTGTTTTTTT
1 TTTGTTTTTTT
41386112 TTTGTTTTTTT
1 TTTGTTTTTTT
*
41386123 TTTATTTT
1 TTTGTTTT
41386131 ATATATCCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.03, C:0.00, G:0.07, T:0.90
Consensus pattern (11 bp):
TTTGTTTTTTT
Found at i:41399407 original size:133 final size:132
Alignment explanation
Indices: 41399196--41399435 Score: 367
Period size: 133 Copynumber: 1.8 Consensus size: 132
41399186 AAGCGTTTGG
41399196 ATTTATTTAAGAAAATAAAGTCTATGGGTAAGCCCTTAGGCAAAGGCCAAAAGTTTGAAATATTG
1 ATTTATTTAAGAAAATAAAGTCTATGGGTAAGCCCTTAGGCAAAGGCCAAAAGTTTGAAATATTG
*
41399261 TCTAGAATAATAGAGATTAAGGAATTAGTTTTAAGTGTTCAACGTTAGAATTTTTGAAATTGATT
66 TCTAGAACAATAGAGATTAAGGAATTAGTTTTAAGTGTTCAACGTTAGAATTTTTGAAATTGATT
41399326 AA
131 AA
* * * ** *
41399328 ATTTATTTAAGAAATTGAAGTCTATGGGTAAGTCCC-TCGGTGAA-GCCTTGAAAGTTTGAAATA
1 ATTTATTTAAGAAAATAAAGTCTATGGGTAAG-CCCTTAGGCAAAGGCC--AAAAGTTTGAAATA
*
41399391 TTGTCTAGAACAATAGAGCTTAAGGAATTAGTTTTAAGTGTTCAA
63 TTGTCTAGAACAATAGAGATTAAGGAATTAGTTTTAAGTGTTCAA
41399436 TGGTAGGATT
Statistics
Matches: 97, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
131 3 0.03
132 35 0.36
133 59 0.61
ACGTcount: A:0.37, C:0.09, G:0.20, T:0.34
Consensus pattern (132 bp):
ATTTATTTAAGAAAATAAAGTCTATGGGTAAGCCCTTAGGCAAAGGCCAAAAGTTTGAAATATTG
TCTAGAACAATAGAGATTAAGGAATTAGTTTTAAGTGTTCAACGTTAGAATTTTTGAAATTGATT
AA
Found at i:41401071 original size:27 final size:29
Alignment explanation
Indices: 41401016--41401087 Score: 76
Period size: 27 Copynumber: 2.5 Consensus size: 29
41401006 ATCGGTAAAT
* * *
41401016 AATGACCTTTGTGGCCTTTTTCTGTTAAAA-
1 AATG-CCTTTATGG-CTATTTCTGCTAAAAG
41401046 AA-GCCTTTATGGCTATTTCTGCTAAAAG
1 AATGCCTTTATGGCTATTTCTGCTAAAAG
*
41401074 AATGCCTTTGTGGC
1 AATGCCTTTATGGC
41401088 AATTAGTGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
27 13 0.36
28 10 0.28
29 11 0.31
30 2 0.06
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.39
Consensus pattern (29 bp):
AATGCCTTTATGGCTATTTCTGCTAAAAG
Found at i:41401124 original size:27 final size:27
Alignment explanation
Indices: 41401094--41401154 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 27
41401084 TGGCAATTAG
41401094 TGAAAGAAAGTCCT-TGA-GGCTAAACTC
1 TGAAAGAAAG-CCTCT-ATGGCTAAACTC
*
41401121 TGAAATAAAGCCTCTATGGCTAAACTC
1 TGAAAGAAAGCCTCTATGGCTAAACTC
41401148 TGGAAAG
1 T-GAAAG
41401155 GAACGCCTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
26 4 0.14
27 21 0.72
28 4 0.14
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.23
Consensus pattern (27 bp):
TGAAAGAAAGCCTCTATGGCTAAACTC
Found at i:41401240 original size:28 final size:27
Alignment explanation
Indices: 41401209--41401297 Score: 106
Period size: 28 Copynumber: 3.2 Consensus size: 27
41401199 AGTCTCTGGA
*
41401209 AAAGAACGCCTTTATGGCTGACTCTATT
1 AAAGAA-GCCTTTGTGGCTGACTCTATT
**
41401237 AAAGAAAGAATTTGTGGCTGACTCTATT
1 AAAG-AAGCCTTTGTGGCTGACTCTATT
* *
41401265 AAAGGAAGCCTTTGTGGTTGACTCTTTT
1 AAA-GAAGCCTTTGTGGCTGACTCTATT
41401293 AAAGA
1 AAAGA
41401298 CACCCTCGCG
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 2 0.04
28 47 0.90
29 3 0.06
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (27 bp):
AAAGAAGCCTTTGTGGCTGACTCTATT
Found at i:41403893 original size:24 final size:22
Alignment explanation
Indices: 41403851--41403895 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
41403841 CAATTATTCA
*
41403851 CATTTCATATACATGTATCATT
1 CATTTCATATACATATATCATT
41403873 CATTTCATATATCAATATATCAT
1 CATTTCATATA-C-ATATATCAT
41403896 GTAACATCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 11 0.55
23 1 0.05
24 8 0.40
ACGTcount: A:0.36, C:0.18, G:0.02, T:0.44
Consensus pattern (22 bp):
CATTTCATATACATATATCATT
Found at i:41404172 original size:25 final size:25
Alignment explanation
Indices: 41404105--41404172 Score: 59
Period size: 25 Copynumber: 2.7 Consensus size: 25
41404095 TAAGCTTTTT
* *
41404105 CGAGTTGAGTAAT-AGTAAGCTCCTA
1 CGAGCTGAG-AATCAGTAAACTCCTA
* * *
41404130 AGAGCTGA-ATATCGGTAAACTCTTA
1 CGAGCTGAGA-ATCAGTAAACTCCTA
41404155 CGAGCTGAGAATCAGTAA
1 CGAGCTGAGAATCAGTAA
41404173 CCTTAATGAC
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
23 1 0.03
24 2 0.06
25 29 0.88
26 1 0.03
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (25 bp):
CGAGCTGAGAATCAGTAAACTCCTA
Found at i:41410320 original size:27 final size:25
Alignment explanation
Indices: 41410265--41410320 Score: 67
Period size: 27 Copynumber: 2.2 Consensus size: 25
41410255 TGCAGCTATT
*
41410265 TTTTTCTTTTTGTTTTCATGTTTAT
1 TTTTTCTTTTTGTTTTCATGTTTAC
**
41410290 TTTTTCTATTTTGTCTTTTTTGTTTAC
1 TTTTTCT-TTTTGT-TTTCATGTTTAC
41410317 TTTT
1 TTTT
41410321 GATTATATGT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 7 0.27
26 6 0.23
27 13 0.50
ACGTcount: A:0.07, C:0.09, G:0.07, T:0.77
Consensus pattern (25 bp):
TTTTTCTTTTTGTTTTCATGTTTAC
Found at i:41411764 original size:699 final size:699
Alignment explanation
Indices: 41410426--41412511 Score: 4118
Period size: 699 Copynumber: 3.0 Consensus size: 699
41410416 TACTTAACGA
41410426 GTTGGTTTTATAGTAAAGTAATATAATTATTATTAAGTTTCCATTCTTAGAACCTAGTGAATAAA
1 GTTGGTTTTATAGTAAAGTAATATAATTATTATTAAGTTTCCATTCTTAGAACCTAGTGAATAAA
41410491 ATGAACATTTTTATGTATTTTATGACCTTCTAGGCCAATCTGGACCTAAAGGAATACTAAAATGT
66 ATGAACATTTTTATGTATTTTATGACCTTCTAGGCCAATCTGGACCTAAAGGAATACTAAAATGT
41410556 TGATTAAGTGTGCAGGTGACTGTACTAGAAAGAATATATGTTTTCTCCCTAGTTATTGGTTAATT
131 TGATTAAGTGTGCAGGTGACTGTACTAGAAAGAATATATGTTTTCTCCCTAGTTATTGGTTAATT
41410621 TGTTCCCATTTAGTTATCTTTAGCATACATTTTAGCATTTTCAGTTTAGTAAATTGCATTTTATA
196 TGTTCCCATTTAGTTATCTTTAGCATACATTTTAGCATTTTCAGTTTAGTAAATTGCATTTTATA
41410686 ACCCAATGAATCCTAGTATATTTTATCCTTAATTTTGCTATCTTTTTGCACTAATGTCACTGCAT
261 ACCCAATGAATCCTAGTATATTTTATCCTTAATTTTGCTATCTTTTTGCACTAATGTCACTGCAT
41410751 TAGTTAACTCCAGATTGTGTCCAGAATTGTCGCTATAACTGACAGCTGTCTGATAAGAGCCAACC
326 TAGTTAACTCCAGATTGTGTCCAGAATTGTCGCTATAACTGACAGCTGTCTGATAAGAGCCAACC
41410816 ATGCGTGAGCTGTCCAATTTGGTATAACTACCCTGTACGTACAAGGACAGAAGAATCTCAAGGGA
391 ATGCGTGAGCTGTCCAATTTGGTATAACTACCCTGTACGTACAAGGACAGAAGAATCTCAAGGGA
*
41410881 ATGACATATGTATAGTTGAGGAGAACATAAAAGATTGACGTGAAAGGAGGAAGAGAGATTTTTTG
456 ATGACATATGTATAGTTGAGGAGAACATAAAAGATTGACGTGAAATGAGGAAGAGAGATTTTTTG
41410946 GCTGAACCACCATTCTCTTACCCTATTTTGAAGCTTGCAGCCATGGCAGCTTGAGCCTCCTGCGG
521 GCTGAACCACCATTCTCTTACCCTATTTTGAAGCTTGCAGCCATGGCAGCTTGAGCCTCCTGCGG
41411011 GTAAGCCAACGTGAAGACTAATGCAGATCCACTCTTGACGAGGAAATCTAATTATAGAATAAGAA
586 GTAAGCCAACGTGAAGACTAATGCAGATCCACTCTTGACGAGGAAATCTAATTATAGAATAAGAA
41411076 GAAATGGAGAGATCCAGTCGAGTAGCCTAGGAATAGTAATATAATTATT
651 GAAATGGAGAGATCCAGTCGAGTAGCCTAGGAATAGTAATATAATTATT
41411125 GTTGGTTTTATAGTAAAGTAATATAATTATTATTAAGTTTCCATTCTTAGAACCTAGTGAATAAA
1 GTTGGTTTTATAGTAAAGTAATATAATTATTATTAAGTTTCCATTCTTAGAACCTAGTGAATAAA
41411190 ATGAACATTTTTATGTATTTTATGACCTTCTAGGCCAATCTGGACCTAAAGGAATACTAAAATGT
66 ATGAACATTTTTATGTATTTTATGACCTTCTAGGCCAATCTGGACCTAAAGGAATACTAAAATGT
41411255 TGATTAAGTGTGCAGGTGACTGTACTAGAAAGAATATATGTTTTCTCCCTAGTTATTGGTTAATT
131 TGATTAAGTGTGCAGGTGACTGTACTAGAAAGAATATATGTTTTCTCCCTAGTTATTGGTTAATT
41411320 TGTTCCCATTTAGTTATCTTTAGCATACATTTTAGCATTTTCAGTTTAGTAAATTGCATTTTATA
196 TGTTCCCATTTAGTTATCTTTAGCATACATTTTAGCATTTTCAGTTTAGTAAATTGCATTTTATA
41411385 ACCCAATGAATCCTAGTATATTTTATCCTTAATTTTGCTATCTTTTTGCACTAATGTCACTGCAT
261 ACCCAATGAATCCTAGTATATTTTATCCTTAATTTTGCTATCTTTTTGCACTAATGTCACTGCAT
41411450 TAGTTAACTCCAGATTGTGTCCAGAATTGTCGCTATAACTGACAGCTGTCTGATAAGAGCCAACC
326 TAGTTAACTCCAGATTGTGTCCAGAATTGTCGCTATAACTGACAGCTGTCTGATAAGAGCCAACC
41411515 ATGCGTGAGCTGTCCAATTTGGTATAACTACCCTGTACGTACAAGGACAGAAGAATCTCAAGGGA
391 ATGCGTGAGCTGTCCAATTTGGTATAACTACCCTGTACGTACAAGGACAGAAGAATCTCAAGGGA
41411580 ATGACATATGTATAGTTGAGGAGAACATAAAAGATTGACGTGAAATGAGGAAGAGAGATTTTTTG
456 ATGACATATGTATAGTTGAGGAGAACATAAAAGATTGACGTGAAATGAGGAAGAGAGATTTTTTG
41411645 GCTGAACCACCATTCTCTTACCCTATTTTGAAGCTTGCAGCCATGGCAGCTTGAGCCTCCTGCGG
521 GCTGAACCACCATTCTCTTACCCTATTTTGAAGCTTGCAGCCATGGCAGCTTGAGCCTCCTGCGG
41411710 GTAAGCCAACGTGAAGACTAATGCAGATCCACTCTTGACGAGGAAATCTAATTATAGAATAAGAA
586 GTAAGCCAACGTGAAGACTAATGCAGATCCACTCTTGACGAGGAAATCTAATTATAGAATAAGAA
41411775 GAAATGGAGAGATCCAGTCGAGTAGCCTAGGAATAGTAATATAATTATT
651 GAAATGGAGAGATCCAGTCGAGTAGCCTAGGAATAGTAATATAATTATT
41411824 GTTGGTTTTATAGTAAAGTAATATAATTATTATTAAGTTTCCATTCTTAGAACCTAGTGAATAAA
1 GTTGGTTTTATAGTAAAGTAATATAATTATTATTAAGTTTCCATTCTTAGAACCTAGTGAATAAA
41411889 ATGAACATTTTTATGTATTTTATGACCTTCTAGGCCAATCTGGACCTAAAGGAATACTAAAATGT
66 ATGAACATTTTTATGTATTTTATGACCTTCTAGGCCAATCTGGACCTAAAGGAATACTAAAATGT
41411954 TGATTAAGTGTGCAGGTGACTGTACTAGAAAGAATATATGTTTTCTCCCTAGTTATTGGTTAATT
131 TGATTAAGTGTGCAGGTGACTGTACTAGAAAGAATATATGTTTTCTCCCTAGTTATTGGTTAATT
41412019 TGTTCCCATTTAGTTATCTTTAGCATACATTTTAGCATTTTCAGTTTAGTAAATTGCATTTTATA
196 TGTTCCCATTTAGTTATCTTTAGCATACATTTTAGCATTTTCAGTTTAGTAAATTGCATTTTATA
41412084 ACCCAATGAATCCTAGTATATTTTATCCTTAATTTTGCTATCTTTTTGCACTAATGTCACTGCAT
261 ACCCAATGAATCCTAGTATATTTTATCCTTAATTTTGCTATCTTTTTGCACTAATGTCACTGCAT
*
41412149 TAGTTAACTCCAGATTGTGTCCAGAATTGTCGCTGTAACTGACAGCTGTCTGATAAGAGCCAACC
326 TAGTTAACTCCAGATTGTGTCCAGAATTGTCGCTATAACTGACAGCTGTCTGATAAGAGCCAACC
*
41412214 ATGCGTGAGCTGTCCAATTTGGTATAACTACCCTGTACGTACAAGTACAGAAGAATCTCAAGGGA
391 ATGCGTGAGCTGTCCAATTTGGTATAACTACCCTGTACGTACAAGGACAGAAGAATCTCAAGGGA
*
41412279 ATGACACATGTATAGTTGAGGAGAACATAAAAGATTGACGTGAAATGAGGAAGAGAGATTTTTTG
456 ATGACATATGTATAGTTGAGGAGAACATAAAAGATTGACGTGAAATGAGGAAGAGAGATTTTTTG
*
41412344 GCTGAACCACCATTCTCTTACCCTATTTTGAAGCTTGCAGCCATGGCAGCTTGAGCCTCCTACGG
521 GCTGAACCACCATTCTCTTACCCTATTTTGAAGCTTGCAGCCATGGCAGCTTGAGCCTCCTGCGG
*
41412409 GTAAGCCAACGTGAAGACTGATGCAGATCCACTCTTGACGAGGAAATCTAATTATAGAATAAGAA
586 GTAAGCCAACGTGAAGACTAATGCAGATCCACTCTTGACGAGGAAATCTAATTATAGAATAAGAA
41412474 GAAATGGAGAGATCCAGTCGAGTAGCCTAGGAATAGTA
651 GAAATGGAGAGATCCAGTCGAGTAGCCTAGGAATAGTA
41412512 TTCTCCATTC
Statistics
Matches: 1381, Mismatches: 6, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
699 1381 1.00
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (699 bp):
GTTGGTTTTATAGTAAAGTAATATAATTATTATTAAGTTTCCATTCTTAGAACCTAGTGAATAAA
ATGAACATTTTTATGTATTTTATGACCTTCTAGGCCAATCTGGACCTAAAGGAATACTAAAATGT
TGATTAAGTGTGCAGGTGACTGTACTAGAAAGAATATATGTTTTCTCCCTAGTTATTGGTTAATT
TGTTCCCATTTAGTTATCTTTAGCATACATTTTAGCATTTTCAGTTTAGTAAATTGCATTTTATA
ACCCAATGAATCCTAGTATATTTTATCCTTAATTTTGCTATCTTTTTGCACTAATGTCACTGCAT
TAGTTAACTCCAGATTGTGTCCAGAATTGTCGCTATAACTGACAGCTGTCTGATAAGAGCCAACC
ATGCGTGAGCTGTCCAATTTGGTATAACTACCCTGTACGTACAAGGACAGAAGAATCTCAAGGGA
ATGACATATGTATAGTTGAGGAGAACATAAAAGATTGACGTGAAATGAGGAAGAGAGATTTTTTG
GCTGAACCACCATTCTCTTACCCTATTTTGAAGCTTGCAGCCATGGCAGCTTGAGCCTCCTGCGG
GTAAGCCAACGTGAAGACTAATGCAGATCCACTCTTGACGAGGAAATCTAATTATAGAATAAGAA
GAAATGGAGAGATCCAGTCGAGTAGCCTAGGAATAGTAATATAATTATT
Found at i:41416770 original size:3 final size:3
Alignment explanation
Indices: 41416762--41416786 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
41416752 ACTAATGTAC
41416762 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
41416787 TTGAAATACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:41417276 original size:11 final size:12
Alignment explanation
Indices: 41417262--41417299 Score: 62
Period size: 11 Copynumber: 3.3 Consensus size: 12
41417252 AAGAAAAAAA
41417262 GAAGAGAG-AGG
1 GAAGAGAGAAGG
41417273 GAAGAGAGAAGG
1 GAAGAGAGAAGG
41417285 G-AGAGAGAAGG
1 GAAGAGAGAAGG
41417296 GAAG
1 GAAG
41417300 GGGAAGGGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 19 0.76
12 6 0.24
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (12 bp):
GAAGAGAGAAGG
Found at i:41417289 original size:22 final size:22
Alignment explanation
Indices: 41417264--41417307 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
41417254 GAAAAAAAGA
41417264 AGAGAG-AGGGAAGAGAGAAGGG
1 AGAGAGAAGGGAAG-GAGAAGGG
*
41417286 AGAGAGAAGGGAAGGGGAAGGG
1 AGAGAGAAGGGAAGGAGAAGGG
41417308 GAATCCGGCC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00
Consensus pattern (22 bp):
AGAGAGAAGGGAAGGAGAAGGG
Found at i:41417851 original size:35 final size:35
Alignment explanation
Indices: 41417811--41417879 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
41417801 GGGTGTGTGA
41417811 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGAG
1 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGAG
41417846 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
41417880 AGAGGCAAGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.20, C:0.12, G:0.51, T:0.17
Consensus pattern (35 bp):
TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGAG
Found at i:41418737 original size:73 final size:73
Alignment explanation
Indices: 41418584--41419412 Score: 494
Period size: 73 Copynumber: 10.8 Consensus size: 73
41418574 ACATGTGAAC
* * * *
41418584 TGAGGCTCAACTCACTTTTCGCAATATGAGTTGATTTTTTTGACAA-CAGAAATTGAAATTACCT
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAGCAGAAATTGAAAATACCT
* *
41418648 CAGCGTGTCC
64 CAACGTGTCT
* ** * *
41418658 TAAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATGCCTCA
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAATTGAAAATACCTCA
41418723 ACGTGTCT
66 ACGTGTCT
** * *
41418731 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAATTACCTCA
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAATTGAAAATACCTCA
*
41418795 ATGTGTCT
66 ACGTGTCT
* * ** * * * ** * *
41418803 TGGGGCTCAACTTATTTCTCGCAATATGAGTTGATTCTTTCAAAAACATAATAACGAAAACAGAA
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTTGAAAAGCAGAA-ATTG-AAA-ATAC
* * ** **
41418868 ATGGAAAATACCT
62 CT-CAACGTGTCT
* * * * * * ** *
41418881 CAGCATGTCCTGAGGCTCAACTCAC-CTCT-TGCAATATGAGTTGATTTAGAAAGCAGACATAAA
1 -TG-A-G-GCTCA-ACTCACCTCTCGCAATATG-AGT-TGA-TT--TTT-GAAA--AG-------
* ** * *
41418944 AACAGAAATTGAAAGTGACTCAAC---ACG
46 --CAGAAATTGAAAATACCTCAACGTGTCT
* * *
41418971 TGA-GC-CAAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTG-AAAGTAGAATTTGAA
1 TGAGGCTCAA--CTC-A----CCTCTCGCAATATGAGTTGA--TTTTTGAAAAGCAGAAATTGAA
** * *
41419033 AATACCTCGGCGTGCCC
57 AATACCTCAACGTGTCT
* * *
41419050 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCA
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAATTGAAAATACCTCA
* *
41419115 GCGTGTCC
66 ACGTGTCT
* *
41419123 TGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGGAATTG
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG------A-AAA--G--CAGAAATTG
41419188 AAAATACCTCAACGTGTCT
55 AAAATACCTCAACGTGTCT
41419207 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCTTGAAAAGCAGAAATTGAAAATACCT
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT-TTGAAAAGCAGAAATTGAAAATACCT
*
41419272 CAATGTGTCT
64 CAACGTGTCT
* *
41419282 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAA-CAGAAATTGAAATTACCT
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAGCAGAAATTGAAAATACCT
*
41419346 CAGCGTGTCT
64 CAACGTGTCT
* *
41419356 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATT-AAAA
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAATTGAAAA
41419413 GGCTTAACTC
Statistics
Matches: 596, Mismatches: 100, Indels: 120
0.73 0.12 0.15
Matches are distributed among these distances:
72 84 0.14
73 145 0.24
74 113 0.19
75 68 0.11
76 22 0.04
77 3 0.01
78 6 0.01
79 11 0.02
80 6 0.01
81 6 0.01
82 7 0.01
83 9 0.02
84 60 0.10
85 12 0.02
86 7 0.01
87 2 0.00
88 3 0.01
89 4 0.01
90 7 0.01
91 6 0.01
92 2 0.00
93 2 0.00
94 2 0.00
95 3 0.01
96 2 0.00
97 4 0.01
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.30
Consensus pattern (73 bp):
TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAATTGAAAATACCTCA
ACGTGTCT
Found at i:41419129 original size:232 final size:229
Alignment explanation
Indices: 41418858--41419407 Score: 723
Period size: 232 Copynumber: 2.4 Consensus size: 229
41418848 ACATAATAAC
* * * *
41418858 GAAAACAGAAATGGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTT
1 GAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
41418923 GATTTAGAAAGCAGACATAAA-AACAGAAATTGAAAGTGA-CTCAACACGTGAGC-CAAGGCTCA
66 GATTTAGAAA--A-ACATAAATAACAGAAATTGAAAAT-ACCTC-A-ACGTG-GCTCAAGGCTCA
* * * * **
41418985 ACTCACCTTTCGCAATATGAGTTGATTTTTTTG-AAAGTAGAATTTGAAAATACCTCGGCGTGCC
124 ACTCACCTCTCGCAATATGAGTTGATTTTCTTGAAAAGCAGAAATTGAAAATACCTCAACGTGCC
41419049 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
189 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
41419089 GAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCAATATGAGT
1 G-AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * **
41419154 TGATTTTTGAAAAACATAAATTGAACAGGAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACT
65 TGA-TTTAGAAAAACATAAA-T-AACAGAAATTGAAAATACCTCAACGTGGCTCAAGGCTCAACT
* * **
41419219 CACCTCTCGCAATATGAGTTGATTTTCTTGAAAAGCAGAAATTGAAAATACCTCAATGTGTCTTG
127 CACCTCTCGCAATATGAGTTGATTTTCTTGAAAAGCAGAAATTGAAAATACCTCAACGTGCCCCG
41419284 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
192 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT
* *
41419323 GACAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 GAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
41419388 GATTTTTGAAAAACAAAAAT
66 GA-TTTAGAAAAACATAAAT
41419408 TAAAAGGCTT
Statistics
Matches: 284, Mismatches: 25, Indels: 19
0.87 0.08 0.06
Matches are distributed among these distances:
230 8 0.03
231 45 0.16
232 122 0.43
233 103 0.36
234 6 0.02
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (229 bp):
GAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTAGAAAAACATAAATAACAGAAATTGAAAATACCTCAACGTGGCTCAAGGCTCAACTCACC
TCTCGCAATATGAGTTGATTTTCTTGAAAAGCAGAAATTGAAAATACCTCAACGTGCCCCGAGGC
TCAACTCACCTCTCGCAATATGAGTTGATTTTTT
Found at i:41419304 original size:159 final size:148
Alignment explanation
Indices: 41418978--41419412 Score: 536
Period size: 159 Copynumber: 2.9 Consensus size: 148
41418968 ACGTGAGCCA
* * ** * *
41418978 AGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTGAA-AGTAGAATTTGAAAATACCTCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTAAACAACAGAAATTGAAAATACCTCA
* **
41419042 GCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTGAA
65 GCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAA
* *
41419106 ATTACCTCAGCGTGTCCTG
130 AATACCTCAACGTGTCCTG
* * *
41419125 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGGAATTGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT--------TAAA--CAACAGAAATTGAA
* *
41419190 AATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCTTGAAAAGC
56 AATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT-TTGAAAAAC
* *
41419255 AGAAATTGAAAATACCTCAATGTGTCTTG
120 AGAAATTGAAAATACCTCAACGTGTCCTG
** *
41419284 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAACAACAGAAATTGAAAATACCTCAG
*
41419349 CGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAAAAATT-AAA
66 CGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAA
41419412 A
131 A
41419413 GGCTTAACTC
Statistics
Matches: 249, Mismatches: 26, Indels: 27
0.82 0.09 0.09
Matches are distributed among these distances:
146 9 0.04
147 44 0.18
148 3 0.01
149 61 0.24
151 2 0.01
154 3 0.01
157 55 0.22
158 3 0.01
159 69 0.28
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.30
Consensus pattern (148 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAACAACAGAAATTGAAAATACCTCAG
CGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAA
ATACCTCAACGTGTCCTG
Found at i:41419374 original size:74 final size:74
Alignment explanation
Indices: 41419177--41419394 Score: 373
Period size: 75 Copynumber: 2.9 Consensus size: 74
41419167 ACATAAATTG
*
41419177 AACAGGAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
41419242 TTTCTTGAA
66 TTTTTTGAA
*
41419251 AAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AA-CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
41419316 TTTTTTTGAC
65 TTTTTTTGAA
* *
41419326 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
41419391 TTTT
66 TTTT
41419395 GAAAAACAAA
Statistics
Matches: 136, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
74 66 0.49
75 70 0.51
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.31
Consensus pattern (74 bp):
AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTTGAA
Found at i:41419592 original size:191 final size:192
Alignment explanation
Indices: 41419283--41420161 Score: 1503
Period size: 191 Copynumber: 4.6 Consensus size: 192
41419273 AATGTGTCTT
* * * *
41419283 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCA
1 GAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTT---AA-A-AATTTAAAAATACCTCA
* **
41419348 GCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAAA
61 ACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAAA
41419413 GGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACT-AAAATACCTCGGCGTGCC
126 GGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCC
41419477 CC
191 CC
* * * *
41419479 GAGGTTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAAAATTTAAAAATACCTCCACGTG
1 GAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAATTTAAAAATACCTCAACGTG
*
41419544 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTAAAAGGCTT
66 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAAAGGCTT
*
41419609 AACTCACCTCTCGCAATATGAGTCAATTTAAAACAGAAACTAAAAATACCTCGGCGTGCCCC
131 AACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCC
*
41419671 GAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTAAAAAATTTAAAAATACCTCAACGTG
1 GAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAATTTAAAAATACCTCAACGTG
41419736 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTGAAAAACAAAAATTAAAAGGCTT
66 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAAAGGCTT
*
41419800 AACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACATCGGCGTGCCCC
131 AACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCC
* *
41419862 GAGGCTCAACTCACTTCTCACAATATGAGTTGATTTTTTAAAAAATTTAAAAATACCTCAACGTG
1 GAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAATTTAAAAATACCTCAACGTG
41419927 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTGAAAAACAAAAATTAAAAGGCTT
66 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAAAGGCTT
*
41419991 AACTCACCTCTCACAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCC
131 AACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCC
41420053 GAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTTTAAAAATTTAAAAATACCTCAAC
1 GAGGCTCAACTCACTTCTCGCAATATGAGTTGA---TTTTTTTAAAAATTTAAAAATACCTCAAC
41420118 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
63 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
41420162 CCTTGGAAAG
Statistics
Matches: 652, Mismatches: 26, Indels: 11
0.95 0.04 0.02
Matches are distributed among these distances:
191 425 0.65
192 118 0.18
193 1 0.00
194 68 0.10
195 3 0.00
196 37 0.06
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.31
Consensus pattern (192 bp):
GAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAATTTAAAAATACCTCAACGTG
TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAAAGGCTT
AACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCC
Found at i:41419989 original size:122 final size:122
Alignment explanation
Indices: 41419863--41420089 Score: 305
Period size: 122 Copynumber: 1.9 Consensus size: 122
41419853 GCGTGCCCCG
* * * * **
41419863 AGGCTCAACTCACTTCTCACAATATGAGTTGATTTTTTAAA-A-AATTTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCACAATATGAG-TCA-ATTTAAAACATAAACTAAAAATACCTCAACGT
* ** *
41419926 GTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
64 GCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
* **
41419985 AGGCTTAACTCACCTCTCACAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGC
1 AGGCTCAACTCACCTCTCACAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAACGTGC
41420050 CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT
66 CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT
41420090 TTTTTTAAAA
Statistics
Matches: 90, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
120 6 0.07
121 3 0.03
122 81 0.90
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.30
Consensus pattern (122 bp):
AGGCTCAACTCACCTCTCACAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAACGTGC
CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
Found at i:41433462 original size:11 final size:12
Alignment explanation
Indices: 41433446--41433483 Score: 62
Period size: 11 Copynumber: 3.3 Consensus size: 12
41433436 AAAGAAAAAA
41433446 GAAGAGAG-AGG
1 GAAGAGAGAAGG
41433457 GAAGAGAGAAGG
1 GAAGAGAGAAGG
41433469 G-AGAGAGAAGG
1 GAAGAGAGAAGG
41433480 GAAG
1 GAAG
41433484 GGGAAGGGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 19 0.76
12 6 0.24
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (12 bp):
GAAGAGAGAAGG
Found at i:41433473 original size:22 final size:22
Alignment explanation
Indices: 41433448--41433491 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
41433438 AGAAAAAAGA
41433448 AGAGAG-AGGGAAGAGAGAAGGG
1 AGAGAGAAGGGAAG-GAGAAGGG
*
41433470 AGAGAGAAGGGAAGGGGAAGGG
1 AGAGAGAAGGGAAGGAGAAGGG
41433492 GAATCCGGCC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00
Consensus pattern (22 bp):
AGAGAGAAGGGAAGGAGAAGGG
Found at i:41434029 original size:35 final size:35
Alignment explanation
Indices: 41433989--41434057 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
41433979 GGGTGTGTGA
41433989 TGGTGCTGGTGGCAGACAGCATAGGAGAGTGGGAG
1 TGGTGCTGGTGGCAGACAGCATAGGAGAGTGGGAG
*
41434024 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 TGGTGCTGGTGGCAGACAGCATAGGAGAGTGGGA
41434058 AGAGGCAAGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.22, C:0.12, G:0.49, T:0.17
Consensus pattern (35 bp):
TGGTGCTGGTGGCAGACAGCATAGGAGAGTGGGAG
Found at i:41434562 original size:17 final size:17
Alignment explanation
Indices: 41434540--41434587 Score: 87
Period size: 17 Copynumber: 2.8 Consensus size: 17
41434530 CCAGATTTTG
41434540 ATACCCATATCTTTCTA
1 ATACCCATATCTTTCTA
*
41434557 ATACCCATATCTTTCTG
1 ATACCCATATCTTTCTA
41434574 ATACCCATATCTTT
1 ATACCCATATCTTT
41434588 AACTTTCTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.27, C:0.29, G:0.02, T:0.42
Consensus pattern (17 bp):
ATACCCATATCTTTCTA
Found at i:41438140 original size:17 final size:17
Alignment explanation
Indices: 41438118--41438167 Score: 91
Period size: 17 Copynumber: 2.9 Consensus size: 17
41438108 TCCCAGGTTT
*
41438118 TGATACTCATATCTTTC
1 TGATACCCATATCTTTC
41438135 TGATACCCATATCTTTC
1 TGATACCCATATCTTTC
41438152 TGATACCCATATCTTT
1 TGATACCCATATCTTT
41438168 AACTTTCTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 32 1.00
ACGTcount: A:0.24, C:0.26, G:0.06, T:0.44
Consensus pattern (17 bp):
TGATACCCATATCTTTC
Found at i:41455278 original size:20 final size:20
Alignment explanation
Indices: 41455253--41455292 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
41455243 AAATCTTGAA
41455253 AATTTTAATAATTAAATTAT
1 AATTTTAATAATTAAATTAT
**
41455273 AATTTTTTTAATTAAATTAT
1 AATTTTAATAATTAAATTAT
41455293 TAAAATAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
AATTTTAATAATTAAATTAT
Found at i:41459332 original size:22 final size:23
Alignment explanation
Indices: 41459307--41459350 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
41459297 AAAAAATAAC
*
41459307 CAAAATGT-TATAATTTTTTTAT
1 CAAAATATATATAATTTTTTTAT
41459329 CAAAATATATATAATTTTTTTA
1 CAAAATATATATAATTTTTTTA
41459351 ATTTACGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.52
Consensus pattern (23 bp):
CAAAATATATATAATTTTTTTAT
Found at i:41459510 original size:27 final size:27
Alignment explanation
Indices: 41459442--41459511 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
41459432 CGCCAATGGG
* *
41459442 ATTGGCGGCACCAAAGGTGTCAAAGCC
1 ATTGGCGGCACCAATGGTGCCAAAGCC
*
41459469 ATTGGTGGCACCAATGGTGCCAATA-CC
1 ATTGGCGGCACCAATGGTGCCAA-AGCC
41459496 ATTGGCGGCACCAATG
1 ATTGGCGGCACCAATG
41459512 TATATTAGGG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
27 37 0.97
28 1 0.03
ACGTcount: A:0.27, C:0.26, G:0.29, T:0.19
Consensus pattern (27 bp):
ATTGGCGGCACCAATGGTGCCAAAGCC
Found at i:41459563 original size:4 final size:4
Alignment explanation
Indices: 41459554--41459692 Score: 92
Period size: 4 Copynumber: 34.0 Consensus size: 4
41459544 GAAGGAGAGG
* *
41459554 GAAA GAAA GAAA GAAA GAAA GAAA GGAAG GAGAG GAAA GAAA G-AA -AAA
1 GAAA GAAA GAAA GAAA GAAA GAAA -GAAA GA-AA GAAA GAAA GAAA GAAA
* * * *
41459602 GAAG GAAA GAAAA GGGAA G-GA GAAGA GAAA AAAA GAAA GAAA G-AA G-AA
1 GAAA GAAA G-AAA -GAAA GAAA GAA-A GAAA GAAA GAAA GAAA GAAA GAAA
*
41459650 GAAAA GGAAA GGAGAA GAAA -AAA GAAA GAAA GAAG GAAA GAAA
1 G-AAA -GAAA -GA-AA GAAA GAAA GAAA GAAA GAAA GAAA GAAA
41459693 AGGAAAGGAG
Statistics
Matches: 111, Mismatches: 11, Indels: 26
0.75 0.07 0.18
Matches are distributed among these distances:
3 15 0.14
4 66 0.59
5 26 0.23
6 4 0.04
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:41459593 original size:18 final size:17
Alignment explanation
Indices: 41459543--41459613 Score: 72
Period size: 18 Copynumber: 4.1 Consensus size: 17
41459533 TGGGGGGACC
41459543 AGAAGGAGAGGGAAAGAA
1 AGAAGGAGA-GGAAAGAA
* *
41459561 AGAAAGA-AAGAAAGAA
1 AGAAGGAGAGGAAAGAA
41459577 AGGAAGGAGAGGAAAGAA
1 A-GAAGGAGAGGAAAGAA
**
41459595 AGAAAAAGAAGGAAAGAA
1 AGAAGGAG-AGGAAAGAA
41459613 A
1 A
41459614 AGGGAAGGAG
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
16 8 0.18
17 11 0.25
18 25 0.57
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (17 bp):
AGAAGGAGAGGAAAGAA
Found at i:41459596 original size:34 final size:34
Alignment explanation
Indices: 41459544--41459753 Score: 155
Period size: 34 Copynumber: 6.0 Consensus size: 34
41459534 GGGGGGACCA
41459544 GAAGGAGAGGGAAAGAAAGAAAGAAAGAAAGAAAG
1 GAAGGAGA-GGAAAGAAAGAAAGAAAGAAAGAAAG
*
41459579 GAAGGAGAGGAAAGAAAGAAAAAGAAGGAAAGAAAAGG
1 GAAGGAGAGGAAAGAAAG--AAAGAAAGAAAG-AAA-G
*
41459617 GAAGGAGAAGAGAAAAAAAGAAAGAAAGAAGAAGAAAAG
1 GAAGGAG-AG-GAAAGAAAGAAAGAAAG-A-AAG-AAAG
* *
41459656 GAAAGGAGAAGAAA-AAAGAAAGAAAGAAGGAAAG
1 G-AAGGAGAGGAAAGAAAGAAAGAAAGAAAGAAAG
* * *
41459690 AAAAGGAAAGG--AGAAGAGAAA-AAA-AAAGAAGAA
1 -GAAGGAGAGGAAAGAA-AGAAAGAAAGAAAGAA-AG
* * *
41459723 GAAGAAGAGGGAAGAAGGAAA-AAA-AAAGAAA
1 GAAGGAGAGGAAAGAAAGAAAGAAAGAAAGAAA
41459754 AGAAAAGGTA
Statistics
Matches: 146, Mismatches: 14, Indels: 33
0.76 0.07 0.17
Matches are distributed among these distances:
32 14 0.10
33 19 0.13
34 30 0.21
35 10 0.07
36 12 0.08
37 15 0.10
38 19 0.13
39 6 0.04
40 21 0.14
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (34 bp):
GAAGGAGAGGAAAGAAAGAAAGAAAGAAAGAAAG
Found at i:41459610 original size:40 final size:40
Alignment explanation
Indices: 41459559--41459725 Score: 134
Period size: 40 Copynumber: 4.2 Consensus size: 40
41459549 AGAGGGAAAG
41459559 AAAGAAAGAAAG-AAAGAAAGGAAGGAGAGGAAAGAAAGAA
1 AAAGAAAGAAAGAAAAGAAAGGAAGGAGA-GAAAGAAAGAA
* *
41459599 AAAGAAGGAAAGAAAAG---GGAAGGAGA-AGAG-AA-AA
1 AAAGAAAGAAAGAAAAGAAAGGAAGGAGAGAAAGAAAGAA
41459633 AAAGAAAGAAAGAAGAAGAAAAGGAAAGGAGAAGAAA-AAAGAAA
1 AAAGAAAGAAAGAA-AAG-AAAGG-AAGGAG-AGAAAGAAAG-AA
* * * *
41459677 GAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAAAAAGAA
1 -AAAGAAAGAAAGAAAA-GAAAGGA-AGGAGAGAAAGAAAGAA
*
41459720 GAAGAA
1 AAAGAA
41459726 GAAGAGGGAA
Statistics
Matches: 103, Mismatches: 8, Indels: 30
0.73 0.06 0.21
Matches are distributed among these distances:
34 15 0.15
35 5 0.05
36 3 0.03
38 9 0.09
39 2 0.02
40 17 0.17
41 5 0.05
42 9 0.09
43 7 0.07
44 17 0.17
45 14 0.14
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (40 bp):
AAAGAAAGAAAGAAAAGAAAGGAAGGAGAGAAAGAAAGAA
Found at i:41459676 original size:45 final size:45
Alignment explanation
Indices: 41459589--41459743 Score: 158
Period size: 45 Copynumber: 3.5 Consensus size: 45
41459579 GAAGGAGAGG
* * *
41459589 AAAGAAAGAAA-AAGAAGGAAAGAAAAGG-GAAGGAGAAGAGAAAA
1 AAAGAAAGAAAGAAGAAGGAAAGGAAAGGAGAA-GAAAAAAGAAAA
* *
41459633 AAAGAAAGAAAGAAGAAGAAAAGGAAAGGAGAAGAAAAAAGAAAG
1 AAAGAAAGAAAGAAGAAGGAAAGGAAAGGAGAAGAAAAAAGAAAA
* *
41459678 AAAGAAGGAAAGAA-AAGGAAAGGAGAA-GAGAAAAAAAAAGAAGAA
1 AAAGAAAGAAAGAAGAAGGAAAGGA-AAGGAGAAGAAAAAAGAA-AA
* **
41459723 GAAG-AAGAGGGAAGAAGGAAA
1 AAAGAAAGAAAGAAGAAGGAAA
41459744 AAAAAAGAAA
Statistics
Matches: 93, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
44 40 0.43
45 50 0.54
46 3 0.03
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (45 bp):
AAAGAAAGAAAGAAGAAGGAAAGGAAAGGAGAAGAAAAAAGAAAA
Found at i:41459693 original size:79 final size:78
Alignment explanation
Indices: 41459544--41459758 Score: 259
Period size: 79 Copynumber: 2.8 Consensus size: 78
41459534 GGGGGGACCA
* * *
41459544 GAAGGAG-AGGGAAAGAAAGAAAGAAAG-A-AAG-AAAGGAAGGAGAGGAAAGAAAG-AA-AAAG
1 GAAGGAGAAGAGAAAAAAAGAAAGAAAGAAGAAGAAAAGGAAGGAGAAGAAA-AAAGAAAGAAAG
41459603 AAGGAAAGAAAAGG
65 AAGGAAAGAAAAGG
41459617 GAAGGAGAAGAGAAAAAAAGAAAGAAAGAAGAAGAAAAGGAAAGGAGAAGAAAAAAGAAAGAAAG
1 GAAGGAGAAGAGAAAAAAAGAAAGAAAGAAGAAGAAAAGG-AAGGAGAAGAAAAAAGAAAGAAAG
41459682 AAGGAAAGAAAAGG
65 AAGGAAAGAAAAGG
* * * *
41459696 AAAGGAGAAGAG-AAAAAA-AAAG-AAGAAGAAGAAGAGGGAAGAAGGAAAAAAAAAGAAAAGAA
1 GAAGGAGAAGAGAAAAAAAGAAAGAAAGAAGAAGAA-AAGGAAGGA-GAAGAAAAAAG-AAAGAA
41459758 A
63 A
41459759 AGGTAATTTT
Statistics
Matches: 125, Mismatches: 7, Indels: 15
0.85 0.05 0.10
Matches are distributed among these distances:
73 7 0.06
74 18 0.14
75 1 0.01
76 18 0.14
77 26 0.21
78 26 0.21
79 29 0.23
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (78 bp):
GAAGGAGAAGAGAAAAAAAGAAAGAAAGAAGAAGAAAAGGAAGGAGAAGAAAAAAGAAAGAAAGA
AGGAAAGAAAAGG
Found at i:41459706 original size:16 final size:15
Alignment explanation
Indices: 41459637--41459738 Score: 69
Period size: 15 Copynumber: 7.1 Consensus size: 15
41459627 AGAAAAAAAG
*
41459637 AAAGAAAGAAGAAGA
1 AAAGAAAGGAGAAGA
41459652 AAAGGAAAGGAGAAG-
1 AAA-GAAAGGAGAAGA
41459667 AAA-AAA-GA-AAG-
1 AAAGAAAGGAGAAGA
41459678 AAAG-AAGGA-AAGA
1 AAAGAAAGGAGAAGA
41459691 AAAGGAAAGGAGAAGA
1 AAA-GAAAGGAGAAGA
**
41459707 GAAA-AAAAAAGAAGA
1 -AAAGAAAGGAGAAGA
41459722 AGAAGAAGAGG-GAAGA
1 A-AAGAA-AGGAGAAGA
41459738 A
1 A
41459739 GGAAAAAAAA
Statistics
Matches: 71, Mismatches: 5, Indels: 21
0.73 0.05 0.22
Matches are distributed among these distances:
11 8 0.11
12 7 0.10
13 6 0.08
14 2 0.03
15 22 0.31
16 22 0.31
17 4 0.06
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (15 bp):
AAAGAAAGGAGAAGA
Found at i:41460514 original size:73 final size:76
Alignment explanation
Indices: 41460375--41460519 Score: 206
Period size: 73 Copynumber: 1.9 Consensus size: 76
41460365 TATTTCGGGT
* *
41460375 TTTTTACCAAAATATTACAAAAAAATAAAAAAATACGAAAATATTATAAACTTTTTTTTATTTAC
1 TTTTTACAAAAATATTA-AAAAAAATAAAAAAATACCAAAATATTATAAACTTTTTTTTATTTAC
*
41460440 CAGAATAATGGG
65 CAAAATAATGGG
* * *
41460452 TTTTTACAAAAATATT-AAAAAAATAAAAATA-ACCAAAATGTTAT-AAGTTTTTTTTATTTACC
1 TTTTTACAAAAATATTAAAAAAAATAAAAAAATACCAAAATATTATAAACTTTTTTTTATTTACC
41460514 AAAATA
66 AAAATA
41460520 TATTTTTTTA
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
73 22 0.35
74 11 0.18
75 14 0.23
77 15 0.24
ACGTcount: A:0.50, C:0.08, G:0.05, T:0.37
Consensus pattern (76 bp):
TTTTTACAAAAATATTAAAAAAAATAAAAAAATACCAAAATATTATAAACTTTTTTTTATTTACC
AAAATAATGGG
Found at i:41460525 original size:22 final size:22
Alignment explanation
Indices: 41460500--41460544 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
41460490 TGTTATAAGT
41460500 TTTTTTTATTTACCAAAATATA
1 TTTTTTTATTTACCAAAATATA
41460522 TTTTTTTATTTACCAAAATATA
1 TTTTTTTATTTACCAAAATATA
41460544 T
1 T
41460545 AAAAAAAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.36, C:0.09, G:0.00, T:0.56
Consensus pattern (22 bp):
TTTTTTTATTTACCAAAATATA
Found at i:41460967 original size:15 final size:15
Alignment explanation
Indices: 41460947--41460978 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
41460937 GATGCGGCTA
41460947 ATAAATTTAGAAATT
1 ATAAATTTAGAAATT
41460962 ATAAATTTAGAAATT
1 ATAAATTTAGAAATT
41460977 AT
1 AT
41460979 GATATTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (15 bp):
ATAAATTTAGAAATT
Found at i:41464963 original size:3 final size:3
Alignment explanation
Indices: 41464955--41464989 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
41464945 TCTTAATACT
41464955 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
41464990 TAATAATAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:41465270 original size:27 final size:27
Alignment explanation
Indices: 41465240--41465295 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
41465230 AATCAGTATG
41465240 GCACCATTGGTGCCGCCAATGGCATTA
1 GCACCATTGGTGCCGCCAATGGCATTA
*
41465267 GCACCATTGGTGCCGCCAATGGCTTTA
1 GCACCATTGGTGCCGCCAATGGCATTA
41465294 GC
1 GC
41465296 GTGACCAAGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.20, C:0.30, G:0.27, T:0.23
Consensus pattern (27 bp):
GCACCATTGGTGCCGCCAATGGCATTA
Found at i:41465357 original size:13 final size:13
Alignment explanation
Indices: 41465323--41465348 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
41465313 TCACATCGGT
41465323 CAGATTTTTTTTG
1 CAGATTTTTTTTG
41465336 CAGATTTTTTTTG
1 CAGATTTTTTTTG
41465349 ATATATTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.08, G:0.15, T:0.62
Consensus pattern (13 bp):
CAGATTTTTTTTG
Found at i:41465375 original size:23 final size:23
Alignment explanation
Indices: 41465349--41465393 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
41465339 ATTTTTTTTG
41465349 ATATATTTTGGTAAATAAAAAAT
1 ATATATTTTGGTAAATAAAAAAT
41465372 ATATATTTTGGTAAATAAAAAA
1 ATATATTTTGGTAAATAAAAAA
41465394 AAGTTATAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (23 bp):
ATATATTTTGGTAAATAAAAAAT
Found at i:41465733 original size:29 final size:29
Alignment explanation
Indices: 41465659--41465719 Score: 104
Period size: 29 Copynumber: 2.1 Consensus size: 29
41465649 AAGTAATTAA
* *
41465659 TATTATATATGAAATATATAAACTTATAT
1 TATTATATATAAAATATATAAACTTAAAT
41465688 TATTATATATAAAATATATAAACTTAAAT
1 TATTATATATAAAATATATAAACTTAAAT
41465717 TAT
1 TAT
41465720 AATAAAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.44
Consensus pattern (29 bp):
TATTATATATAAAATATATAAACTTAAAT
Found at i:41466215 original size:22 final size:21
Alignment explanation
Indices: 41466189--41466243 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 21
41466179 GAAAATCTTT
41466189 AAATTTGAAAAAAAAATACAAA
1 AAATTT-AAAAAAAAATACAAA
* *
41466211 AAATTATAAAAAAAAATAGAGA
1 AAATT-TAAAAAAAAATACAAA
*
41466233 AAATTTTAAAA
1 AAATTTAAAAA
41466244 TATATATTAG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
21 5 0.17
22 23 0.79
23 1 0.03
ACGTcount: A:0.71, C:0.02, G:0.05, T:0.22
Consensus pattern (21 bp):
AAATTTAAAAAAAAATACAAA
Found at i:41469085 original size:25 final size:23
Alignment explanation
Indices: 41469052--41469122 Score: 79
Period size: 25 Copynumber: 3.0 Consensus size: 23
41469042 GAGCTATATA
*
41469052 TAACGGGAAGCTCATGTGAGTCATG
1 TAACGGGAAGCTCATGAGAG-C-TG
*
41469077 TAACGGGAAGCTCATAAGAGCTG
1 TAACGGGAAGCTCATGAGAGCTG
* *
41469100 TAATCAGGAAGCTCATGCGAGCT
1 TAA-CGGGAAGCTCATGAGAGCT
41469123 AATATCGGAA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
23 5 0.12
24 17 0.43
25 18 0.45
ACGTcount: A:0.31, C:0.18, G:0.30, T:0.21
Consensus pattern (23 bp):
TAACGGGAAGCTCATGAGAGCTG
Found at i:41469179 original size:25 final size:25
Alignment explanation
Indices: 41469151--41469228 Score: 102
Period size: 25 Copynumber: 3.1 Consensus size: 25
41469141 AGAATCGTTA
* *
41469151 ATCAGGAAGCTTATGAGAGCCAGAT
1 ATCAGGAAGCTCATGAGAGCCAAAT
*
41469176 ATCAGGAAGCTCGTGAGAGCCAAAT
1 ATCAGGAAGCTCATGAGAGCCAAAT
* * *
41469201 AACAGGAAGCTCAAGAGAGCCATAT
1 ATCAGGAAGCTCATGAGAGCCAAAT
41469226 ATC
1 ATC
41469229 GATAAATACA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 45 1.00
ACGTcount: A:0.38, C:0.19, G:0.26, T:0.17
Consensus pattern (25 bp):
ATCAGGAAGCTCATGAGAGCCAAAT
Found at i:41469426 original size:24 final size:23
Alignment explanation
Indices: 41469367--41469427 Score: 59
Period size: 24 Copynumber: 2.5 Consensus size: 23
41469357 TAACGGAAAT
*
41469367 CTCATGTGAGTCATGTAACAGGAAG
1 CTCATGTGAG-C-TGTAACAAGAAG
** *
41469392 CTCATAAGAGCTGTAATCAATAAG
1 CTCATGTGAGCTGTAA-CAAGAAG
41469416 CTCATGTGAGCT
1 CTCATGTGAGCT
41469428 AATATCGGAA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
23 5 0.17
24 16 0.55
25 8 0.28
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (23 bp):
CTCATGTGAGCTGTAACAAGAAG
Found at i:41469474 original size:305 final size:305
Alignment explanation
Indices: 41468919--41469534 Score: 1063
Period size: 305 Copynumber: 2.0 Consensus size: 305
41468909 TTGAACTAAA
41468919 ATATCGATAAATACACAGGTAGTACACACAAAGTGTACAAATCTATAATCCATCAATTCATATAT
1 ATATCGATAAATACACAGGTAGTACACACAAAGTGTACAAATCTATAATCCATCAATTCATATAT
* * *
41468984 TATCCTTCAATTCATATTCAGGAATACTTATATGAGCATGTAAACGGGAAGATCTTCCGAGCTAT
66 TATCCGTCAATTCATATTCAGGAATACTCATACGAGCATGTAAACGGGAAGATCTTCCGAGCTAT
* * *
41469049 ATATAACGGGAAGCTCATGTGAGTCATGTAACGGGAAGCTCATAAGAGCTGTAATCAGGAAGCTC
131 ATATAACGGAAAGCTCATGTGAGTCATGTAACAGGAAGCTCATAAGAGCTGTAATCAAGAAGCTC
* *
41469114 ATGCGAGCTAATATCGGAAAGCTCCGGAGAATCGTTAATCAGGAAGCTTATGAGAGCCAGATATC
196 ATGCGAGCTAATATCGGAAAGCTCCGGAGAATCGTTAATCAGAAAGCTCATGAGAGCCAGATATC
41469179 AGGAAGCTCGTGAGAGCCAAATAACAGGAAGCTCAAGAGAGCCAT
261 AGGAAGCTCGTGAGAGCCAAATAACAGGAAGCTCAAGAGAGCCAT
* * * *
41469224 ATATCGATAAATACACATGTAGTACACACAAAGTGTATAAATCTGTAATCCGTCAATTCATATAT
1 ATATCGATAAATACACAGGTAGTACACACAAAGTGTACAAATCTATAATCCATCAATTCATATAT
*
41469289 TATCCGTCAATTCATATTCAGGAATACTCATACGAGCATGTAAACGGGAAGCTCTTCCGAGCTAT
66 TATCCGTCAATTCATATTCAGGAATACTCATACGAGCATGTAAACGGGAAGATCTTCCGAGCTAT
* *
41469354 ATATAACGGAAATCTCATGTGAGTCATGTAACAGGAAGCTCATAAGAGCTGTAATCAATAAGCTC
131 ATATAACGGAAAGCTCATGTGAGTCATGTAACAGGAAGCTCATAAGAGCTGTAATCAAGAAGCTC
*
41469419 ATGTGAGCTAATATCGGAAAGCTCCGGAGAA-CTGTTAATCAGAAAGCTCATGAGAGCCAGATAT
196 ATGCGAGCTAATATCGGAAAGCTCCGGAGAATC-GTTAATCAGAAAGCTCATGAGAGCCAGATAT
*
41469483 CGGGAAGCTCGTGAGAGCCAAATAACAGGAAGCTCAAGAGAGCCAT
260 CAGGAAGCTCGTGAGAGCCAAATAACAGGAAGCTCAAGAGAGCCAT
41469529 ATATCG
1 ATATCG
41469535 GGATGTTCAT
Statistics
Matches: 293, Mismatches: 17, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
304 1 0.00
305 292 1.00
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.24
Consensus pattern (305 bp):
ATATCGATAAATACACAGGTAGTACACACAAAGTGTACAAATCTATAATCCATCAATTCATATAT
TATCCGTCAATTCATATTCAGGAATACTCATACGAGCATGTAAACGGGAAGATCTTCCGAGCTAT
ATATAACGGAAAGCTCATGTGAGTCATGTAACAGGAAGCTCATAAGAGCTGTAATCAAGAAGCTC
ATGCGAGCTAATATCGGAAAGCTCCGGAGAATCGTTAATCAGAAAGCTCATGAGAGCCAGATATC
AGGAAGCTCGTGAGAGCCAAATAACAGGAAGCTCAAGAGAGCCAT
Found at i:41469490 original size:25 final size:25
Alignment explanation
Indices: 41469462--41469600 Score: 127
Period size: 25 Copynumber: 5.6 Consensus size: 25
41469452 GTTAATCAGA
*
41469462 AAGCTCATGAGAGCCAGATATCGGG
1 AAGCTCATGAGAGCCAAATATCGGG
* * *
41469487 AAGCTCGTGAGAGCCAAATAACAGG
1 AAGCTCATGAGAGCCAAATATCGGG
* *
41469512 AAGCTCAAGAGAGCCATATATCGGG
1 AAGCTCATGAGAGCCAAATATCGGG
* * * * *
41469537 ATGTTCATAAGAGCTAAATAACGGG
1 AAGCTCATGAGAGCCAAATATCGGG
* * *
41469562 AAGATCGTGAGAGCCATATATCGGG
1 AAGCTCATGAGAGCCAAATATCGGG
*
41469587 ACA-CTCATAAGAGC
1 A-AGCTCATGAGAGC
41469601 TGTGGTGAGT
Statistics
Matches: 87, Mismatches: 26, Indels: 2
0.76 0.23 0.02
Matches are distributed among these distances:
25 86 0.99
26 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.27, T:0.17
Consensus pattern (25 bp):
AAGCTCATGAGAGCCAAATATCGGG
Found at i:41469516 original size:50 final size:50
Alignment explanation
Indices: 41469462--41469600 Score: 172
Period size: 50 Copynumber: 2.8 Consensus size: 50
41469452 GTTAATCAGA
* * *
41469462 AAGCTCATGAGAGCCAGATATCGGGAAGCTCGTGAGAGCCAAATAACAGG
1 AAGCTCATGAGAGCCATATATCGGGAAGCTCATAAGAGCCAAATAACAGG
* * * * *
41469512 AAGCTCAAGAGAGCCATATATCGGGATGTTCATAAGAGCTAAATAACGGG
1 AAGCTCATGAGAGCCATATATCGGGAAGCTCATAAGAGCCAAATAACAGG
* *
41469562 AAGATCGTGAGAGCCATATATCGGGACA-CTCATAAGAGC
1 AAGCTCATGAGAGCCATATATCGGGA-AGCTCATAAGAGC
41469601 TGTGGTGAGT
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
50 75 1.00
ACGTcount: A:0.37, C:0.19, G:0.27, T:0.17
Consensus pattern (50 bp):
AAGCTCATGAGAGCCATATATCGGGAAGCTCATAAGAGCCAAATAACAGG
Found at i:41472019 original size:25 final size:25
Alignment explanation
Indices: 41471991--41472099 Score: 130
Period size: 25 Copynumber: 4.4 Consensus size: 25
41471981 TAAACTCCGC
*
41471991 CGAGCTGAATAACGATAAGCTCTTT
1 CGAGCTGAATAACGATAAGCTCATT
* *
41472016 CGAGGTGAATAACGATAAGCTCTTT
1 CGAGCTGAATAACGATAAGCTCATT
*
41472041 CGAGCTGAATAACGGTAAGCTCATT
1 CGAGCTGAATAACGATAAGCTCATT
* * * *
41472066 CAAGCTGAGTATC-AGTAAGCTCATA
1 CGAGCTGAATAACGA-TAAGCTCATT
41472091 CGAGCTGAA
1 CGAGCTGAA
41472100 ATCGGTAACC
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
25 72 1.00
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (25 bp):
CGAGCTGAATAACGATAAGCTCATT
Found at i:41476419 original size:787 final size:789
Alignment explanation
Indices: 41474881--41476464 Score: 2956
Period size: 787 Copynumber: 2.0 Consensus size: 789
41474871 CAAATGACAA
41474881 TATTCAAACATGTATTTTCATATATATATATATCTATATATATATTATAACCAAATAAACCATCA
1 TATTCAAACATGTATTTTC--A-ATATATATA-CTATATATATATTATAACCAAATAAACCATCA
*
41474946 ATTTACCAAGCTAATTTGAGTCCTTTAATACCAATTCATTTATCTACCAAAACACACCATTTGAT
62 ATTTACCAAGCTAATTTGAATCCTTTAATACCAATTCATTTATCTACCAAAACACACCATTTGAT
41475011 ACCAAAAAGCATTTCAAATACTAACATATTTAGACATATATATACCTTAAATATCAAGGTACCAA
127 ACCAAAAAGCATTTCAAATACTAACATATTTAGACATATATATACCTTAAATATCAAGGTACCAA
*
41475076 TTTATCACCAATTCTTCACATCACAAACATATGTACAAAATGCACATTTAGCTAACATTTACCTT
192 TTCATCACCAATTCTTCACATCACAAACATATGTACAAAATGCACATTTAGCTAACATTTACCTT
*
41475141 TCATTATTCTATCACAAATCAAGCCACACACCAAATATGATAAGGCCATTTGTATATACACAGAG
257 TCATTATTCTATCACAAATCAAGCCACACACCAAATATGATAAGGCCATTTATATATACACAGAG
41475206 CAAAATATATCAAAACACAAGCCAAAACATATGGCCACAACCACAACATCACACATAGGCCAACA
322 CAAAATATATCAAAACACAAGCCAAAACATATGGCCACAACCACAACATCACACATAGGCCAACA
* *
41475271 TTAGTCAAAATAACCTATACATGCCATTATAACCAAAATGTAACCAACTAAAAGTACCAAAAGAG
387 TTAGCCAAAATAACATATACATGCCATTATAACCAAAATGTAACCAACTAAAAGTACCAAAAGAG
*
41475336 ACGATGGATAGTGTGATATAACTCCGAGAAGCTTTCAACCCGAACGAGCTTCCGAATCACTATAA
452 ACGATGGATAGTGTGATATAACTCCGAGAAGCTTTCAACCCGAACGAGCCTCCGAATCACTATAA
*
41475401 AACACGGAAAATAACACATAGTAAGCATTTAAGCTTAGTAAGTTCGTATAACTTAGAATTTAACT
517 AACACAGAAAATAACACATAGTAAGCATTTAAGCTTAGTAAGTTCGTATAACTTAGAATTTAACT
41475466 TACCATTTTAAATCACAATTAAGTTAAGCTAACATAACATATCCCAACCAATTTGGCTAAAAGCC
582 TACCATTTTAAATCACAATTAAGTTAAGCTAACATAACATATCCCAACCAATTTGGCTAAAAGCC
41475531 TAAACACAAGTTCATCAACATATTAGCCATGTAAATAATATATAAAATCCAATATACATGGATGA
647 TAAACACAAGTTCATCAACATATTAGCCATGTAAATAATATATAAAATCCAATATACATGGATGA
*
41475596 ATTTAACAAGTAATCACATTTCATATACACGAATTATTCATTTCATAAATCAATGTATCATGTAA
712 ATTCAACAAGTAATCACATTTCATATACACGAATTATTCATTTCATAAATCAATGTATCATGTAA
41475661 CATCACTTTCATG
777 CATCACTTTCATG
41475674 TATTCAAACATGTATTTTC-ATATATATA-TATATATATATTATAACCAAATAAACCATCAATTT
1 TATTCAAACATGTATTTTCAATATATATACTATATATATATTATAACCAAATAAACCATCAATTT
* *
41475737 ACCAAGCTAATTTGAATCTTTTCATACCAATTCATTTATCTACCAAAACACACCATTTGATACCA
66 ACCAAGCTAATTTGAATCCTTTAATACCAATTCATTTATCTACCAAAACACACCATTTGATACCA
* *
41475802 AAACGCATTTCAAATACTAACATATTTAGACATATATATACCTTACATATCAAGGTACCAATTCA
131 AAAAGCATTTCAAATACTAACATATTTAGACATATATATACCTTAAATATCAAGGTACCAATTCA
41475867 TCACCAATTCTTCACATCACAAACATATGTACAAAATGCACATTTAGCTAACATTTACCTTTCAT
196 TCACCAATTCTTCACATCACAAACATATGTACAAAATGCACATTTAGCTAACATTTACCTTTCAT
* *
41475932 TATTCTATCATAAATCAAGCCACACACCAAATATGATAAGGCCATTTATATATACACATAGCAAA
261 TATTCTATCACAAATCAAGCCACACACCAAATATGATAAGGCCATTTATATATACACAGAGCAAA
41475997 ATATATCAAAACACAAGCCAAAACATATGGCCACAACCACAACATCACACATAGGCCAACATTAG
326 ATATATCAAAACACAAGCCAAAACATATGGCCACAACCACAACATCACACATAGGCCAACATTAG
41476062 CCAAAATAACATATACATGCCATTATAACCAAAATGTAACCAACTAAAAGTACCAAAAGAGACGA
391 CCAAAATAACATATACATGCCATTATAACCAAAATGTAACCAACTAAAAGTACCAAAAGAGACGA
*
41476127 TGGATAGTGTGATATAACTCTGAGAAGCTTTCAACCCGAACGAGCCTCCGAATCACTATAAAACA
456 TGGATAGTGTGATATAACTCCGAGAAGCTTTCAACCCGAACGAGCCTCCGAATCACTATAAAACA
* *
41476192 CAGAAAATAACATATAGTAAGTATTTAAGCTTAGTAAGTTCGTATAACTTAGAATTTAACTTACC
521 CAGAAAATAACACATAGTAAGCATTTAAGCTTAGTAAGTTCGTATAACTTAGAATTTAACTTACC
41476257 ATTTTAAATCACAATTAAGTTAAGCTAACATAACATATCCCAACCAATTTGGCTAAAAGCCTAAA
586 ATTTTAAATCACAATTAAGTTAAGCTAACATAACATATCCCAACCAATTTGGCTAAAAGCCTAAA
*
41476322 CACAAGTTCATCAACATATTAGCCATGTAAATCATATATAAAATCCAATATACATGGATGAATTC
651 CACAAGTTCATCAACATATTAGCCATGTAAATAATATATAAAATCCAATATACATGGATGAATTC
41476387 AACAAGTAATCACATTTCATATACACGAATTATTCATTTCATAAATCAATGTATCATGTAACATC
716 AACAAGTAATCACATTTCATATACACGAATTATTCATTTCATAAATCAATGTATCATGTAACATC
41476452 ACTTTCATG
781 ACTTTCATG
41476461 TATT
1 TATT
41476465 TCATGTAAAT
Statistics
Matches: 773, Mismatches: 18, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
787 745 0.96
789 9 0.01
793 19 0.02
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (789 bp):
TATTCAAACATGTATTTTCAATATATATACTATATATATATTATAACCAAATAAACCATCAATTT
ACCAAGCTAATTTGAATCCTTTAATACCAATTCATTTATCTACCAAAACACACCATTTGATACCA
AAAAGCATTTCAAATACTAACATATTTAGACATATATATACCTTAAATATCAAGGTACCAATTCA
TCACCAATTCTTCACATCACAAACATATGTACAAAATGCACATTTAGCTAACATTTACCTTTCAT
TATTCTATCACAAATCAAGCCACACACCAAATATGATAAGGCCATTTATATATACACAGAGCAAA
ATATATCAAAACACAAGCCAAAACATATGGCCACAACCACAACATCACACATAGGCCAACATTAG
CCAAAATAACATATACATGCCATTATAACCAAAATGTAACCAACTAAAAGTACCAAAAGAGACGA
TGGATAGTGTGATATAACTCCGAGAAGCTTTCAACCCGAACGAGCCTCCGAATCACTATAAAACA
CAGAAAATAACACATAGTAAGCATTTAAGCTTAGTAAGTTCGTATAACTTAGAATTTAACTTACC
ATTTTAAATCACAATTAAGTTAAGCTAACATAACATATCCCAACCAATTTGGCTAAAAGCCTAAA
CACAAGTTCATCAACATATTAGCCATGTAAATAATATATAAAATCCAATATACATGGATGAATTC
AACAAGTAATCACATTTCATATACACGAATTATTCATTTCATAAATCAATGTATCATGTAACATC
ACTTTCATG
Found at i:41476698 original size:25 final size:25
Alignment explanation
Indices: 41476669--41476752 Score: 80
Period size: 25 Copynumber: 3.4 Consensus size: 25
41476659 TAAACTCCTC
41476669 CGAGCTGAATAACGATAAGCTCTTT
1 CGAGCTGAATAACGATAAGCTCTTT
* *
41476694 CGAGCTGAATAACGGTAAGTTCATTT
1 CGAGCTGAATAACGATAAGCTC-TTT
* * * * * *
41476720 -GAACTGAGTATCAATAAGCTCATA
1 CGAGCTGAATAACGATAAGCTCTTT
41476744 CGAGCTGAA
1 CGAGCTGAA
41476753 ATCGGTAACC
Statistics
Matches: 45, Mismatches: 12, Indels: 4
0.74 0.20 0.07
Matches are distributed among these distances:
24 1 0.02
25 41 0.91
26 3 0.07
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (25 bp):
CGAGCTGAATAACGATAAGCTCTTT
Found at i:41482086 original size:27 final size:27
Alignment explanation
Indices: 41482052--41482110 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
41482042 GTTATACTTC
* ** *
41482052 TTTG-TCAAAAATCAAGTGATATAACT
1 TTTGATCAAAAACCAAAAGATATAAAT
*
41482078 TTTGATCAATAACCAAAAGATATAAAT
1 TTTGATCAAAAACCAAAAGATATAAAT
41482105 TTTGAT
1 TTTGAT
41482111 TAATTACACT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 4 0.15
27 23 0.85
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.36
Consensus pattern (27 bp):
TTTGATCAAAAACCAAAAGATATAAAT
Found at i:41483574 original size:57 final size:55
Alignment explanation
Indices: 41483504--41483619 Score: 155
Period size: 57 Copynumber: 2.1 Consensus size: 55
41483494 ATATTTAGGG
* *
41483504 AATGATTATGATTTTCTCCAAATGAAAATGAAAATAGAGAAAATGGAA-TCATTTGGA
1 AATGATTATGATTTTCTCAAAATGAAAATGAAAAT-GAG-AAAT-GAATTCATTTAGA
*
41483561 AATGAATT-TGATTTTCTCAAAATGGAAATGAAAATGAGAAATGAATTCATTTAGA
1 AATG-ATTATGATTTTCTCAAAATGAAAATGAAAATGAGAAATGAATTCATTTAGA
41483616 AATG
1 AATG
41483620 GAAAATGAAT
Statistics
Matches: 54, Mismatches: 3, Indels: 6
0.86 0.05 0.10
Matches are distributed among these distances:
54 3 0.06
55 16 0.30
56 3 0.06
57 29 0.54
58 3 0.06
ACGTcount: A:0.46, C:0.06, G:0.17, T:0.31
Consensus pattern (55 bp):
AATGATTATGATTTTCTCAAAATGAAAATGAAAATGAGAAATGAATTCATTTAGA
Found at i:41483633 original size:55 final size:57
Alignment explanation
Indices: 41483511--41483637 Score: 145
Period size: 57 Copynumber: 2.3 Consensus size: 57
41483501 GGGAATGATT
* * * *
41483511 ATGATTTTCTCCAAATGAAAATGAAAATAGAGAAAATGGAATCATTTGGAAATGAAT
1 ATGATATTCTCAAAATGAAAATGAAAATAGAGAAAATGGAATCATTTAGAAATGAAA
* * *
41483568 TTGATTTTCTCAAAATGGAAATGAAAAT-GAG-AAAT-GAATTCATTTAGAAATGGAAA
1 ATGATATTCTCAAAATGAAAATGAAAATAGAGAAAATGGAA-TCATTTAGAAAT-GAAA
41483624 ATGA-ATTCTCAAAA
1 ATGATATTCTCAAAA
41483638 ATAATCAGAA
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
54 3 0.05
55 24 0.39
56 9 0.15
57 25 0.41
ACGTcount: A:0.47, C:0.07, G:0.17, T:0.29
Consensus pattern (57 bp):
ATGATATTCTCAAAATGAAAATGAAAATAGAGAAAATGGAATCATTTAGAAATGAAA
Found at i:41484812 original size:6 final size:6
Alignment explanation
Indices: 41484796--41484858 Score: 99
Period size: 6 Copynumber: 10.3 Consensus size: 6
41484786 TTTCTTTCCA
*
41484796 TTCTCTT TTCTTT TTCTTT TTCTTT TTCTTT TTCTTT TTCTTT TTCTTC
1 TTCT-TT TTCTTT TTCTTT TTCTTT TTCTTT TTCTTT TTCTTT TTCTTT
*
41484845 TTATTT TTCTTT TT
1 TTCTTT TTCTTT TT
41484859 ACTTGTTTCC
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
6 48 0.92
7 4 0.08
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (6 bp):
TTCTTT
Found at i:41489827 original size:52 final size:52
Alignment explanation
Indices: 41489749--41489854 Score: 185
Period size: 52 Copynumber: 2.0 Consensus size: 52
41489739 TGATCCCTTG
*
41489749 GCAAATGACGCGAGTGCTTTTGTCTACGAAAACCACCGGTTGAGACACCGAA
1 GCAAATGACGCGAGTGCTTTTGTCTACAAAAACCACCGGTTGAGACACCGAA
* *
41489801 GCAAATGACGCGTGTGTTTTTGTCTACAAAAACCACCGGTTGAGACACCGAA
1 GCAAATGACGCGAGTGCTTTTGTCTACAAAAACCACCGGTTGAGACACCGAA
41489853 GC
1 GC
41489855 GGCCGAGAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.30, C:0.25, G:0.25, T:0.21
Consensus pattern (52 bp):
GCAAATGACGCGAGTGCTTTTGTCTACAAAAACCACCGGTTGAGACACCGAA
Found at i:41491523 original size:87 final size:87
Alignment explanation
Indices: 41491377--41491558 Score: 337
Period size: 87 Copynumber: 2.1 Consensus size: 87
41491367 CAACAAATGA
41491377 TAAAATCATCAATGCATAAAAACTCATAAAATATAGAACTTGACTGATGCACTTTAACAAATTGT
1 TAAAATCATCAATGCATAAAAACTCATAAAATATAGAACTTGACTGATGCACTTTAACAAATTGT
41491442 TTAAACTTAAACCAGATAAGTG
66 TTAAACTTAAACCAGATAAGTG
* *
41491464 TAAAATCATCAATGCATAAAAACTTATAAAATATAGAACTTGACTGATGCATTTTAACAAATTGT
1 TAAAATCATCAATGCATAAAAACTCATAAAATATAGAACTTGACTGATGCACTTTAACAAATTGT
41491529 TTAAACTTAAACCAGATAAGTG
66 TTAAACTTAAACCAGATAAGTG
*
41491551 TAATATCA
1 TAAAATCA
41491559 ATGTTAGTCA
Statistics
Matches: 92, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
87 92 1.00
ACGTcount: A:0.46, C:0.14, G:0.10, T:0.30
Consensus pattern (87 bp):
TAAAATCATCAATGCATAAAAACTCATAAAATATAGAACTTGACTGATGCACTTTAACAAATTGT
TTAAACTTAAACCAGATAAGTG
Found at i:41494008 original size:13 final size:14
Alignment explanation
Indices: 41493992--41494020 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
41493982 TATATATTAT
41493992 TAAAATATTAA-TA
1 TAAAATATTAAGTA
41494005 TAAAATATTAAGTA
1 TAAAATATTAAGTA
41494019 TA
1 TA
41494021 TATTTAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (14 bp):
TAAAATATTAAGTA
Found at i:41494064 original size:19 final size:19
Alignment explanation
Indices: 41494024--41494074 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
41494014 AAGTATATAT
* *
41494024 TTAAATTTAAAA-TTATTT
1 TTAAAATTAAAATTTATTA
**
41494042 TTAATGTTAAAATTTATTA
1 TTAAAATTAAAATTTATTA
41494061 TTAAAATTAAAATT
1 TTAAAATTAAAATT
41494075 GTAATTTTAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
18 10 0.37
19 17 0.63
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (19 bp):
TTAAAATTAAAATTTATTA
Found at i:41494163 original size:13 final size:15
Alignment explanation
Indices: 41494128--41494158 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
41494118 TGTATGTTTA
41494128 ATAATATTGAAAATT
1 ATAATATTGAAAATT
*
41494143 ATAATATTTAAAATT
1 ATAATATTGAAAATT
41494158 A
1 A
41494159 ATATTATATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (15 bp):
ATAATATTGAAAATT
Found at i:41494703 original size:10 final size:10
Alignment explanation
Indices: 41494688--41494712 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
41494678 TACGCCCTTT
41494688 TATATTTATA
1 TATATTTATA
41494698 TATATTTATA
1 TATATTTATA
41494708 TATAT
1 TATAT
41494713 ATTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (10 bp):
TATATTTATA
Found at i:41495742 original size:11 final size:11
Alignment explanation
Indices: 41495728--41495757 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
41495718 TTTTATTTTT
41495728 TAATTTTAAAA
1 TAATTTTAAAA
41495739 TAATTTTAAAA
1 TAATTTTAAAA
41495750 TAATTTTA
1 TAATTTTA
41495758 TTTTTTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (11 bp):
TAATTTTAAAA
Found at i:41497294 original size:43 final size:43
Alignment explanation
Indices: 41497222--41497347 Score: 134
Period size: 43 Copynumber: 2.9 Consensus size: 43
41497212 AGGATTTCAT
41497222 TATGTG-TTATCGTGTAAGACCACGTCTGGGACGTTGGCATCGAC
1 TATGTGATTA-CGTGTAAGACCACGTCTGGGACGTTGGCATCG-C
** * *
41497266 T-TGTGACTTA-GTGTAAGACCTTGTCTGGGATAG-TGGCATCGT
1 TATGTGA-TTACGTGTAAGACCACGTCTGGGA-CGTTGGCATCGC
* *
41497308 TATGTGATTACATGTAAGACCACGTCTAGGACGTTGGCAT
1 TATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
41497348 TGTACGAAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 13
0.75 0.10 0.15
Matches are distributed among these distances:
42 5 0.07
43 57 0.85
44 2 0.03
45 3 0.04
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (43 bp):
TATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGC
Found at i:41500637 original size:16 final size:15
Alignment explanation
Indices: 41500616--41500645 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
41500606 GTGAGTTGGA
41500616 TATATATATGTATAAT
1 TATATATA-GTATAAT
41500632 TATATATAGTATAA
1 TATATATAGTATAA
41500646 ATGTGAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (15 bp):
TATATATAGTATAAT
Found at i:41502642 original size:24 final size:24
Alignment explanation
Indices: 41502614--41502663 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
41502604 ATGAAGCTTG
41502614 AAATTATGTTAAACAACTTTTGCT
1 AAATTATGTTAAACAACTTTTGCT
41502638 AAATTATGTTAAACAACTTTTGCT
1 AAATTATGTTAAACAACTTTTGCT
41502662 AA
1 AA
41502664 GCGATTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (24 bp):
AAATTATGTTAAACAACTTTTGCT
Found at i:41502673 original size:24 final size:24
Alignment explanation
Indices: 41502619--41502673 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
41502609 GCTTGAAATT
**
41502619 ATGTTAAACAACTTTTGCTAAATT
1 ATGTTAAACAACTTTTGCTAAACG
*
41502643 ATGTTAAACAACTTTTGCTAAGCG
1 ATGTTAAACAACTTTTGCTAAACG
*
41502667 ATTTTAA
1 ATGTTAA
41502674 GTGAAAACGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40
Consensus pattern (24 bp):
ATGTTAAACAACTTTTGCTAAACG
Found at i:41503327 original size:50 final size:50
Alignment explanation
Indices: 41503219--41503515 Score: 308
Period size: 50 Copynumber: 5.8 Consensus size: 50
41503209 ATTTGGATAA
* * * *
41503219 AGAGATCCCATGTAAGACCATGTTTGGGACATGACATTGGCATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATG
*
41503275 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
41503325 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * * *
41503375 AGAGGTCCCCCGTAAGACCATATCTGGGACATGGCATGGGCACCGATATA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * * * ** * *
41503425 AGAACTCCCATGTAAGACCATATTTGGGATATGACATTGGCA-ATACAAG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* ** *
41503474 AAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
41503516 TGTTATTATC
Statistics
Matches: 208, Mismatches: 33, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
49 36 0.17
50 130 0.62
53 3 0.01
55 1 0.00
56 38 0.18
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Done.